Query 008579
Match_columns 561
No_of_seqs 215 out of 574
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 1E-73 3.6E-78 587.9 30.7 284 1-309 3-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 5.4E-68 1.9E-72 547.8 26.1 280 6-309 12-291 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 1.5E-65 5.2E-70 520.5 25.0 259 5-286 11-269 (271)
4 1eyh_A Epsin; superhelix of he 99.5 1.3E-13 4.4E-18 127.6 11.1 115 28-150 2-119 (144)
5 1inz_A EPS15-interacting porte 99.5 1.5E-13 5.2E-18 127.7 11.1 117 28-152 20-139 (148)
6 3onk_A Epsin-3, ENT3; helix, p 99.2 3.6E-11 1.2E-15 111.9 11.5 116 26-149 6-125 (150)
7 1xgw_A Epsin 4; ENTH, enthopro 99.2 6.8E-11 2.3E-15 112.7 13.5 114 28-149 31-148 (176)
8 1vdy_A Hypothetical protein (R 98.3 4.1E-06 1.4E-10 77.0 11.3 115 33-151 13-128 (140)
9 1juq_A ADP-ribosylation factor 96.0 0.017 5.7E-07 54.5 7.9 78 30-110 12-89 (171)
10 1elk_A Target of MYB1; superhe 95.7 0.037 1.2E-06 51.3 9.0 79 30-110 15-93 (157)
11 3ldz_A STAM-1, signal transduc 95.5 0.049 1.7E-06 49.6 9.0 77 31-110 5-81 (140)
12 3g2s_A C-terminal fragment of 95.4 0.061 2.1E-06 49.6 9.3 78 30-110 10-87 (149)
13 1x5b_A Signal transducing adap 95.4 0.043 1.5E-06 51.2 8.3 78 30-110 14-91 (163)
14 1mhq_A ADP-ribosylation factor 95.3 0.049 1.7E-06 50.1 8.2 76 32-110 2-77 (148)
15 3rru_A TOM1L1 protein; structu 95.2 0.062 2.1E-06 49.7 8.8 79 30-110 15-93 (152)
16 3zyq_A Hepatocyte growth facto 94.8 0.094 3.2E-06 51.3 9.1 79 29-110 6-84 (226)
17 1dvp_A HRS, hepatocyte growth 94.5 0.11 3.7E-06 50.5 8.7 76 32-110 6-81 (220)
18 3iot_A Maltose-binding protein 81.6 0.29 9.8E-06 51.3 -0.1 15 251-265 185-199 (449)
19 3iot_A Maltose-binding protein 72.8 0.79 2.7E-05 47.9 0.3 12 185-196 129-140 (449)
20 3bej_E Nuclear receptor coacti 54.9 5 0.00017 26.0 1.4 12 94-105 14-25 (26)
21 4b8c_D Glucose-repressible alc 44.9 3.4 0.00012 46.4 -1.0 7 497-503 69-75 (727)
22 2prg_C Nuclear receptor coacti 27.9 22 0.00076 29.7 1.5 12 94-105 67-78 (88)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=1e-73 Score=587.92 Aligned_cols=284 Identities=26% Similarity=0.472 Sum_probs=244.3
Q ss_pred CcchHHHHHHHhhhc-cccceeeeeecCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhh
Q 008579 1 MGTLQTWRKAYGALK-DTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRL 79 (561)
Q Consensus 1 m~~~~~~rka~GalK-D~tsig~Akv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL 79 (561)
|+ .++||+++|++| |+|+ .++++||+|||+|+++|||+||||+||.+|+.++ +++++|+++|.+|
T Consensus 3 ~~-~~~~~~~~~a~k~~~~~----------~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R- 68 (299)
T 1hx8_A 3 MA-GQTINDRLLAARHSLAG----------QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIER- 68 (299)
T ss_dssp ------------------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHH-
T ss_pred Cc-hHHHHHHHHHHhhccch----------hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhh-
Confidence 54 369999999999 9988 4688899999999999999999999999999865 6889999999999
Q ss_pred ccCCChhHHHHHHHHHHHHHhcCCcchHHHHHHHhhcccccccccccCCCC-----------CCCCcccHHHHHHHHHHH
Q 008579 80 AKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSS-----------PIAWDCSAWVRTYALFLE 148 (561)
Q Consensus 80 ~kTrnWiVAlKtLIllHrLLreG~p~f~eell~y~~r~~iL~Ls~F~D~ss-----------~~a~d~safVR~Ya~YLd 148 (561)
.+++||+|+||||||||||||||||.|.+++. ++.++|+|++|+|+++ +.+||||.|||+|++||+
T Consensus 69 ~~~~~w~va~K~LivlH~llreG~~~~~~~l~---~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~ 145 (299)
T 1hx8_A 69 SQNANWVVVYKSLITTHHLMAYGNERFMQYLA---SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLN 145 (299)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH---HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH---hCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHH
Confidence 58999999999999999999999999988763 2567999999999865 457899999999999999
Q ss_pred HHHHHhhhccccccccCCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHhcCccCCCccccchHHHHHHHHHHHH
Q 008579 149 ERLECFRILKYDIEAERLPRPVQGEDKGYSRTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKES 228 (561)
Q Consensus 149 eRL~~~r~~~~d~~~~r~~k~~~~~~~~~~~~~~l~~e~LL~~L~~LQ~Ll~rlL~crp~g~a~~N~lvl~AL~lLVkDS 228 (561)
+|+.+|+..++|++... .+.+ ..++++|+++.||++++.||+||+++++|++.+.+.+|+|+++||++||+||
T Consensus 146 ~r~~~f~~~~~d~~~~~-----~~~~--~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds 218 (299)
T 1hx8_A 146 EKSLSYRAMAFDFCKVK-----RGKE--EGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDL 218 (299)
T ss_dssp HHHHHHHHHSSCGGGC------------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccccc-----cCcc--ccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHH
Confidence 99988999999886321 1222 3468889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccccccccCCCCCCCCchhHHHHHHHHH
Q 008579 229 FKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIR 308 (561)
Q Consensus 229 ~~LY~~inegiinLLd~fFeM~~~da~kaLeiykRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~sfL~~LEEylr 308 (561)
++||+++|+||+||||+||+|++.||++||+||+||.+|+++|++||++||++++.+ ++||+|+++|++||++|||||+
T Consensus 219 ~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~ 297 (299)
T 1hx8_A 219 IRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLA 297 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999977 8999999999999999999999
Q ss_pred h
Q 008579 309 E 309 (561)
Q Consensus 309 d 309 (561)
+
T Consensus 298 ~ 298 (299)
T 1hx8_A 298 T 298 (299)
T ss_dssp T
T ss_pred h
Confidence 6
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=5.4e-68 Score=547.78 Aligned_cols=280 Identities=25% Similarity=0.459 Sum_probs=235.7
Q ss_pred HHHHHHhhhccccceeeeeecCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCCh
Q 008579 6 TWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNW 85 (561)
Q Consensus 6 ~~rka~GalKD~tsig~Akv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnW 85 (561)
+++.=+.|.|- .|.| +++++||+|||+|+++|||+||||+||.+|+.++ .++.+|+++|.+|++ ++||
T Consensus 12 ~~~~~~~~~~~-------~~~~--s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~--~~~~~i~~~L~~Rl~-~~~w 79 (310)
T 3zym_A 12 SLTDRITAAQH-------SVTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSSW 79 (310)
T ss_dssp CHHHHHHHHHH-------CCHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHTT-SSCH
T ss_pred cHHHHHHHHHh-------cccc--cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCC--CcHHHHHHHHHhhcC-CCch
Confidence 45544444444 2444 8999999999999999999999999999999865 678999999999997 8999
Q ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHhhcccccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhccccccccC
Q 008579 86 TVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAER 165 (561)
Q Consensus 86 iVAlKtLIllHrLLreG~p~f~eell~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLdeRL~~~r~~~~d~~~~r 165 (561)
+|+||+|||||||||+|||.|.+++ .+++++|+|++|+|++++.+|||+.|||+|++||++|+.+|+.+++|++..+
T Consensus 80 ~vv~KaLivlH~llreG~~~~l~~~---~~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~~~ 156 (310)
T 3zym_A 80 VVVFKSLITTHHLMVYGNERFIQYL---ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVK 156 (310)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHH---HHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTSC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH---HhCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 9999999999999999999987654 2356799999999998777899999999999999999999999999887422
Q ss_pred CCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHhcCccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008579 166 LPRPVQGEDKGYSRTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDK 245 (561)
Q Consensus 166 ~~k~~~~~~~~~~~~~~l~~e~LL~~L~~LQ~Ll~rlL~crp~g~a~~N~lvl~AL~lLVkDS~~LY~~inegiinLLd~ 245 (561)
++ ...++++|+++.||++++.||+||+++++|+|.+.+.+|.|+++||++||+|||+||+++|+|||||||+
T Consensus 157 --~~------~~~~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ 228 (310)
T 3zym_A 157 --RG------ADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEK 228 (310)
T ss_dssp --CS------TTSHHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CC------CCCccccCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1236788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccccccccCCCCCCCCchhHHHHHHHHHh
Q 008579 246 FFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIRE 309 (561)
Q Consensus 246 fFeM~~~da~kaLeiykRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~sfL~~LEEylrd 309 (561)
||||++.||++||+||+||.+|+++|++||++||++|+++. +||+|+++|++++..++.-|.|
T Consensus 229 ffem~~~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~~-~iP~L~~~p~d~l~~lq~~i~e 291 (310)
T 3zym_A 229 YFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG-DISGSGSGHMDRVRNLQSEVEG 291 (310)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCCcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887 9999999999999999988876
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=1.5e-65 Score=520.53 Aligned_cols=259 Identities=27% Similarity=0.505 Sum_probs=232.6
Q ss_pred HHHHHHHhhhccccceeeeeecCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCC
Q 008579 5 QTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRN 84 (561)
Q Consensus 5 ~~~rka~GalKD~tsig~Akv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrn 84 (561)
++++.=+.+.|- .|.+ +++++||+|||+|+++|||+||||+||.+|+.++ .++.+|+++|.+|++ ++|
T Consensus 11 ~~~~~~~~~~~~-------~~~~--s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~--~~~~~~~~~L~~Rl~-~~~ 78 (271)
T 3zyl_A 11 QSLTDRITAAQH-------SVTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSS 78 (271)
T ss_dssp -CHHHHHHHHHH-------HHHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTT--SCHHHHHHHHHHHTT-SSC
T ss_pred ccHHHHHHHHHh-------cccc--hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCC--CcHHHHHHHHHHHhC-CCc
Confidence 345554544444 2344 8999999999999999999999999999999865 678999999999997 899
Q ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHhhcccccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhcccccccc
Q 008579 85 WTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAE 164 (561)
Q Consensus 85 WiVAlKtLIllHrLLreG~p~f~eell~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLdeRL~~~r~~~~d~~~~ 164 (561)
|+|+||+|||||||||+|||.|.+++ .+++++|+|++|+|++++.+|||++|||+|++||++|+.+|+..++|++..
T Consensus 79 w~v~~KaLivlH~llreG~~~~l~~~---~~~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~~ 155 (271)
T 3zyl_A 79 WVVVFKSLITTHHLMVYGNERFIQYL---ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKV 155 (271)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHH---HHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHH---HhCCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 99999999999999999999887654 235679999999999877889999999999999999999999999998743
Q ss_pred CCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHhcCccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008579 165 RLPRPVQGEDKGYSRTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVD 244 (561)
Q Consensus 165 r~~k~~~~~~~~~~~~~~l~~e~LL~~L~~LQ~Ll~rlL~crp~g~a~~N~lvl~AL~lLVkDS~~LY~~inegiinLLd 244 (561)
+ + . ...++++|+++.||++++.||+||+++++|+|.+.+.+|.|+++||++||+|||+||+++|+|||||||
T Consensus 156 k--~----~--~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe 227 (271)
T 3zyl_A 156 K--R----G--ADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLE 227 (271)
T ss_dssp C--C----S--TTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--C----C--CCCccccCCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 1 123678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccc
Q 008579 245 KFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARN 286 (561)
Q Consensus 245 ~fFeM~~~da~kaLeiykRf~kQ~e~L~~Fy~~ck~l~~~r~ 286 (561)
+||||++.||++||+||+||.+|+++|++||++||++|++|+
T Consensus 228 ~ffem~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 228 KYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269 (271)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 999999999999999999999999999999999999999876
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.48 E-value=1.3e-13 Score=127.62 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=97.3
Q ss_pred CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHHhcCCcch
Q 008579 28 DYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAK-TRNWTVALKTLIVIHRTLREGDPTF 106 (561)
Q Consensus 28 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~k-TrnWiVAlKtLIllHrLLreG~p~f 106 (561)
+|++.++.|..|||++.++|+.+++.+|..+|+.. .++..++..|.+||.. .++|.+++|+|+|||.||+.|++.|
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 57899999999999999999999999999999874 5788899999999963 3699999999999999999999998
Q ss_pred HHHHHHHhhccccccccccc--CCCCCCCCcccHHHHHHHHHHHHH
Q 008579 107 REELLNFQLRGRILQLSNFK--DDSSPIAWDCSAWVRTYALFLEER 150 (561)
Q Consensus 107 ~eell~y~~r~~iL~Ls~F~--D~ss~~a~d~safVR~Ya~YLdeR 150 (561)
..++... ...|..|.+|. |. .+.|.+..||.+|++|.+-
T Consensus 79 v~~~~~~--~~~i~~L~~F~y~d~---~g~D~G~~VR~kak~l~~L 119 (144)
T 1eyh_A 79 SQQCKEN--MYAVQTLKDFQYVDR---DGKDQGVNVREKAKQLVAL 119 (144)
T ss_dssp HHHHHHT--HHHHHGGGGCCCBCT---TSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHh--hHHHhhhccceeeCC---CccchHHHHHHHHHHHHHH
Confidence 7665432 23477888874 42 3578999999999999543
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.47 E-value=1.5e-13 Score=127.66 Aligned_cols=117 Identities=18% Similarity=0.263 Sum_probs=99.0
Q ss_pred CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHHhcCCcch
Q 008579 28 DYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAK-TRNWTVALKTLIVIHRTLREGDPTF 106 (561)
Q Consensus 28 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~k-TrnWiVAlKtLIllHrLLreG~p~f 106 (561)
++++.++.|..|||++.++|+.+++.+|..+|+.. .++..++..|.+||.. .++|.+++|+|+|||.||+.|++.|
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v 96 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 96 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS---HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH
Confidence 47999999999999999999999999999999985 5788899999999973 3799999999999999999999988
Q ss_pred HHHHHHHhhccccccccccc--CCCCCCCCcccHHHHHHHHHHHHHHH
Q 008579 107 REELLNFQLRGRILQLSNFK--DDSSPIAWDCSAWVRTYALFLEERLE 152 (561)
Q Consensus 107 ~eell~y~~r~~iL~Ls~F~--D~ss~~a~d~safVR~Ya~YLdeRL~ 152 (561)
..++... ...|..|.+|. |. .+.|.+..||.+|++|.+-|.
T Consensus 97 v~~~r~~--~~~I~~L~~F~y~d~---~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 97 SQQCKEN--MYAVQTLKDFQYVDR---DGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHT--HHHHHHHHHCCCCCS---SCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHh--HHHHHhhcceeeeCC---CCcCchHHHHHHHHHHHHHhC
Confidence 7665432 22467777763 42 357889999999999988654
No 6
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.24 E-value=3.6e-11 Score=111.93 Aligned_cols=116 Identities=21% Similarity=0.281 Sum_probs=94.0
Q ss_pred cCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccC--CChhHHHHHHHHHHHHHhcCC
Q 008579 26 NSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKT--RNWTVALKTLIVIHRTLREGD 103 (561)
Q Consensus 26 ~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kT--rnWiVAlKtLIllHrLLreG~ 103 (561)
.-+|++.++.|..|||.+.++|..+++.+|..+|+.. .++..++..|.+||... ++|.+++|||+||+.||+.|+
T Consensus 6 v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGs 82 (150)
T 3onk_A 6 DPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNF---REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGS 82 (150)
T ss_dssp --CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSC
T ss_pred hcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCC
Confidence 3368999999999999999999999999999999974 46788999999999742 589999999999999999999
Q ss_pred cchHHHHHHHhhccccccccccc--CCCCCCCCcccHHHHHHHHHHHH
Q 008579 104 PTFREELLNFQLRGRILQLSNFK--DDSSPIAWDCSAWVRTYALFLEE 149 (561)
Q Consensus 104 p~f~eell~y~~r~~iL~Ls~F~--D~ss~~a~d~safVR~Ya~YLde 149 (561)
+.|..++... ...|-.|.+|. |. .+.|.+.-||..|+.|.+
T Consensus 83 e~vv~~~r~~--~~~i~~L~~F~~~d~---~G~D~G~~VR~kak~l~~ 125 (150)
T 3onk_A 83 ERFIDDTRNS--INLIRILETFHYIDS---QGRDQGINVRTRVKALIE 125 (150)
T ss_dssp HHHHHHHHTT--HHHHHGGGGCCCBCT---TSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHhhhcccccCC---CCCchHHHHHHHHHHHHH
Confidence 9887765322 11244466764 42 257889999999999943
No 7
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.24 E-value=6.8e-11 Score=112.67 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=94.5
Q ss_pred CCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhh-c-cCCChhHHHHHHHHHHHHHhcCCcc
Q 008579 28 DYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRL-A-KTRNWTVALKTLIVIHRTLREGDPT 105 (561)
Q Consensus 28 ~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL-~-kTrnWiVAlKtLIllHrLLreG~p~ 105 (561)
++++.++.|..|||.+..+|..+++.+|..+|+.. .++..++..|.+|| . +.++|.+++|+|+||+.||+.|++.
T Consensus 31 ~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~---~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~ 107 (176)
T 1xgw_A 31 NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY---EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSER 107 (176)
T ss_dssp CCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT---TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999986 46889999999996 4 3589999999999999999999988
Q ss_pred hHHHHHHHhhccccccccccc--CCCCCCCCcccHHHHHHHHHHHH
Q 008579 106 FREELLNFQLRGRILQLSNFK--DDSSPIAWDCSAWVRTYALFLEE 149 (561)
Q Consensus 106 f~eell~y~~r~~iL~Ls~F~--D~ss~~a~d~safVR~Ya~YLde 149 (561)
|.+++.... ..|-.|.+|. |. .+.|.+..||..|+.|.+
T Consensus 108 vv~~~r~~i--~~I~~L~~F~y~D~---~G~D~G~~VR~kAk~i~~ 148 (176)
T 1xgw_A 108 VVTSAREHI--YDLRSLENYHFVDE---HGKDQGINIRQKVKELVE 148 (176)
T ss_dssp HHHHHHHTH--HHHHGGGGCCCBCT---TSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhH--HHHHhhccCeeECC---CCCChHHHHHHHHHHHHH
Confidence 876652211 1244567774 33 357889999999999943
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.30 E-value=4.1e-06 Score=77.03 Aligned_cols=115 Identities=18% Similarity=0.099 Sum_probs=92.0
Q ss_pred HHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHHH
Q 008579 33 DVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLN 112 (561)
Q Consensus 33 ~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eell~ 112 (561)
.+.|.+||+.++.||--==..+|...|+.+.. ..+..++..|.+||.+ ++|.|.+|+|-+|-.|++.|++.|..++.+
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~-~~~~eim~~L~kRL~~-k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHV-SIVKEFSEFILKRLDN-KSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhcC-CCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 46799999999999888888999999987531 1246889999999965 789999999999999999999999887644
Q ss_pred HhhcccccccccccCCCCC-CCCcccHHHHHHHHHHHHHH
Q 008579 113 FQLRGRILQLSNFKDDSSP-IAWDCSAWVRTYALFLEERL 151 (561)
Q Consensus 113 y~~r~~iL~Ls~F~D~ss~-~a~d~safVR~Ya~YLdeRL 151 (561)
.. ..|-.+.+|+.-..+ .+.+.+..||.-|+=|.+-|
T Consensus 91 ~~--~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 91 NS--VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TT--HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred hH--HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 32 236777888754332 36788999999998887654
No 9
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.96 E-value=0.017 Score=54.47 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=66.9
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 008579 30 ADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREE 109 (561)
Q Consensus 30 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~ee 109 (561)
..++..|.|||+....-|+--.+-+|........ .....++.+|.+||. .+|..|++-+|.|+.-|+..+...|..+
T Consensus 12 s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 12 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 5689999999999988899998888888876543 356789999999995 6899999999999999999988888765
Q ss_pred H
Q 008579 110 L 110 (561)
Q Consensus 110 l 110 (561)
+
T Consensus 89 v 89 (171)
T 1juq_A 89 V 89 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=95.72 E-value=0.037 Score=51.34 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=67.1
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 008579 30 ADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREE 109 (561)
Q Consensus 30 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~ee 109 (561)
..++..|.|||+....-|+--.+-+|........ .....++.+|.+||...+|..|++-+|.|+.-|+..+.+.|..+
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e 92 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL 92 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3799999999999988888888888877765542 45678999999999655899999999999999999999888766
Q ss_pred H
Q 008579 110 L 110 (561)
Q Consensus 110 l 110 (561)
+
T Consensus 93 v 93 (157)
T 1elk_A 93 V 93 (157)
T ss_dssp H
T ss_pred H
Confidence 5
No 11
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.54 E-value=0.049 Score=49.56 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=66.2
Q ss_pred hHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 008579 31 DLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREEL 110 (561)
Q Consensus 31 dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eel 110 (561)
.++..|.|||+....-++--.+-+|....... + .....++.+|.+||. .+|..|++-+|.|+.-++..+.+.|..++
T Consensus 5 p~d~~iekAT~~~l~~~dw~~ileicD~I~~~-~-~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 5 PFDQDVEKATSEMNTAEDWGLILDICDKVGQS-R-TGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp TTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTS-T-THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCC-C-cCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 46789999999998889999998888887654 3 456789999999995 58999999999999999999998887654
No 12
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.42 E-value=0.061 Score=49.62 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=68.2
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 008579 30 ADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREE 109 (561)
Q Consensus 30 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~ee 109 (561)
..++..|.|||+....-|+--.+-+|-....... .....++.+|.+||. .+|..|++-+|.|+.-++..+.+.|..+
T Consensus 10 ~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~--~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 10 ETLEARINRATNPLNKELDWASINGFCEQLNEDF--EGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp CCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6799999999999988899999988888876653 456789999999995 6899999999999999999999988766
Q ss_pred H
Q 008579 110 L 110 (561)
Q Consensus 110 l 110 (561)
+
T Consensus 87 i 87 (149)
T 3g2s_A 87 V 87 (149)
T ss_dssp H
T ss_pred H
Confidence 5
No 13
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.38 E-value=0.043 Score=51.21 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=65.9
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 008579 30 ADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREE 109 (561)
Q Consensus 30 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~ee 109 (561)
..++..|.|||+....-|+--.+-+|........ .....++.+|.+||. .+|..|++-+|.|+.-|+..+...|..+
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~--~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTP--NGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4578999999999888889888888887776542 456789999999995 5899999999999999999988888755
Q ss_pred H
Q 008579 110 L 110 (561)
Q Consensus 110 l 110 (561)
+
T Consensus 91 v 91 (163)
T 1x5b_A 91 V 91 (163)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.30 E-value=0.049 Score=50.13 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 008579 32 LDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREEL 110 (561)
Q Consensus 32 L~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eel 110 (561)
++..|.|||+....-|+--.+-+|........ .....++.+|.+||. .+|..|++-+|.|+.-++..+.+.|..++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~--~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDP--NGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 67899999999888888888888888776542 356789999999995 68999999999999999999988887665
No 15
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.25 E-value=0.062 Score=49.72 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=67.8
Q ss_pred chHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 008579 30 ADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREE 109 (561)
Q Consensus 30 ~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~ee 109 (561)
..++..|.|||+....-|+--.+-+|-....... .....++.+|.+||...+|..|++-+|.|+.-|+..+...|..+
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7899999999999988888888888877765542 35678999999999755689999999999999999999999877
Q ss_pred H
Q 008579 110 L 110 (561)
Q Consensus 110 l 110 (561)
+
T Consensus 93 i 93 (152)
T 3rru_A 93 I 93 (152)
T ss_dssp H
T ss_pred H
Confidence 6
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=94.78 E-value=0.094 Score=51.32 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=66.9
Q ss_pred CchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHH
Q 008579 29 YADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFRE 108 (561)
Q Consensus 29 ~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~e 108 (561)
.+.++..|.|||+....-|+--.+-+|-....... .....++.+|.+||. .+|..|++-+|.|+.-++..+...|..
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~--~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGD--TQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 36899999999999988899888888888776542 345788999999996 689999999999999999998888765
Q ss_pred HH
Q 008579 109 EL 110 (561)
Q Consensus 109 el 110 (561)
++
T Consensus 83 ei 84 (226)
T 3zyq_A 83 EV 84 (226)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.50 E-value=0.11 Score=50.47 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 008579 32 LDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREEL 110 (561)
Q Consensus 32 L~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p~f~eel 110 (561)
++..|.|||+....-|+-..+-+|........ .....++.+|.+||. .+|..|++-+|.|+--++..+.+.|..++
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~--~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKD--VTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCC--cCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 88999999999988899988888888876543 356789999999995 58999999999999999999887776554
No 18
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=81.57 E-value=0.29 Score=51.30 Aligned_cols=15 Identities=13% Similarity=-0.079 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHH
Q 008579 251 RHEAIKALEIYKRAG 265 (561)
Q Consensus 251 ~~da~kaLeiykRf~ 265 (561)
..+.+++|+.+++..
T Consensus 185 ~~~~~~al~~~~~l~ 199 (449)
T 3iot_A 185 NAGAKAGLTFLVDLI 199 (449)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 455566665555543
No 19
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=72.81 E-value=0.79 Score=47.90 Aligned_cols=12 Identities=25% Similarity=0.105 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 008579 185 SEELLEQLPALQ 196 (561)
Q Consensus 185 ~e~LL~~L~~LQ 196 (561)
.++|++....|.
T Consensus 129 wdel~~~a~~l~ 140 (449)
T 3iot_A 129 WEEIPALDKELK 140 (449)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555554443
No 20
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=54.91 E-value=5 Score=25.98 Aligned_cols=12 Identities=50% Similarity=1.126 Sum_probs=10.2
Q ss_pred HHHHHHhcCCcc
Q 008579 94 VIHRTLREGDPT 105 (561)
Q Consensus 94 llHrLLreG~p~ 105 (561)
++||||++|.|.
T Consensus 14 ILHrLLQ~~sP~ 25 (26)
T 3bej_E 14 ILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHcCCCC
Confidence 589999999873
No 21
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=44.94 E-value=3.4 Score=46.45 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 008579 497 QMAAMAQ 503 (561)
Q Consensus 497 qm~~m~~ 503 (561)
|=-.|.|
T Consensus 69 ~~~~~~~ 75 (727)
T 4b8c_D 69 RQNAMKK 75 (727)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334443
No 22
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=27.89 E-value=22 Score=29.67 Aligned_cols=12 Identities=50% Similarity=1.126 Sum_probs=10.4
Q ss_pred HHHHHHhcCCcc
Q 008579 94 VIHRTLREGDPT 105 (561)
Q Consensus 94 llHrLLreG~p~ 105 (561)
++||||++|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 589999999875
Done!