Query 008580
Match_columns 561
No_of_seqs 413 out of 1618
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 13:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1472 Histone acetyltransfer 100.0 1E-67 2.2E-72 584.0 9.0 348 194-555 355-709 (720)
2 cd05497 Bromo_Brdt_I_like Brom 99.9 7.3E-27 1.6E-31 207.5 12.3 103 449-552 3-107 (107)
3 cd05495 Bromo_cbp_like Bromodo 99.9 2.2E-26 4.7E-31 204.8 12.8 104 450-554 2-108 (108)
4 cd05496 Bromo_WDR9_II Bromodom 99.9 2E-26 4.4E-31 208.5 11.8 106 449-555 3-109 (119)
5 cd05505 Bromo_WSTF_like Bromod 99.9 1.8E-26 3.8E-31 201.8 10.9 95 454-549 3-97 (97)
6 cd05507 Bromo_brd8_like Bromod 99.9 7.9E-26 1.7E-30 199.7 12.3 102 450-552 2-103 (104)
7 cd05508 Bromo_RACK7 Bromodomai 99.9 1.1E-25 2.5E-30 197.6 11.5 97 450-548 2-98 (99)
8 cd05510 Bromo_SPT7_like Bromod 99.9 1.8E-25 3.9E-30 200.4 12.3 105 448-553 4-110 (112)
9 cd05504 Bromo_Acf1_like Bromod 99.9 2.7E-25 5.9E-30 199.8 12.3 104 448-552 9-112 (115)
10 cd05502 Bromo_tif1_like Bromod 99.9 3.8E-25 8.2E-30 196.6 13.0 104 451-555 4-109 (109)
11 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.1E-25 4.6E-30 194.5 10.8 95 454-549 3-97 (97)
12 cd05509 Bromo_gcn5_like Bromod 99.9 3.1E-25 6.8E-30 194.0 11.8 100 452-552 2-101 (101)
13 cd05528 Bromo_AAA Bromodomain; 99.9 1.6E-24 3.5E-29 194.1 12.3 104 451-555 3-110 (112)
14 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.1E-24 2.5E-29 193.4 10.7 100 452-552 2-107 (107)
15 cd05506 Bromo_plant1 Bromodoma 99.9 2.2E-24 4.8E-29 187.9 10.9 96 453-549 2-99 (99)
16 cd05512 Bromo_brd1_like Bromod 99.9 2.6E-24 5.6E-29 188.5 11.0 92 452-544 2-93 (98)
17 cd05501 Bromo_SP100C_like Brom 99.9 5.3E-24 1.1E-28 188.1 12.5 96 455-554 6-101 (102)
18 cd05499 Bromo_BDF1_2_II Bromod 99.9 3.3E-24 7.1E-29 188.2 11.1 95 454-549 3-102 (102)
19 cd05513 Bromo_brd7_like Bromod 99.9 3.9E-24 8.4E-29 187.6 11.0 93 452-545 2-94 (98)
20 cd05500 Bromo_BDF1_2_I Bromodo 99.9 5.7E-24 1.2E-28 187.2 11.9 99 450-549 3-103 (103)
21 cd05511 Bromo_TFIID Bromodomai 99.9 4.8E-24 1E-28 190.9 11.4 102 453-555 2-103 (112)
22 cd05498 Bromo_Brdt_II_like Bro 99.9 5.5E-24 1.2E-28 186.5 11.1 96 453-549 2-102 (102)
23 KOG1474 Transcription initiati 99.9 5.2E-24 1.1E-28 238.8 12.2 109 447-556 218-328 (640)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 1.4E-23 3.1E-28 184.7 10.2 97 452-549 1-103 (103)
25 cd05515 Bromo_polybromo_V Brom 99.9 2.5E-23 5.5E-28 184.1 10.2 96 454-550 3-104 (105)
26 smart00297 BROMO bromo domain. 99.9 6.9E-23 1.5E-27 178.7 12.2 103 448-551 4-106 (107)
27 COG5076 Transcription factor i 99.9 5.1E-24 1.1E-28 224.9 5.7 223 204-556 19-252 (371)
28 cd05524 Bromo_polybromo_I Brom 99.9 7.1E-23 1.5E-27 183.7 11.4 103 453-556 4-112 (113)
29 cd05529 Bromo_WDR9_I_like Brom 99.9 1.7E-22 3.8E-27 184.8 13.2 101 450-551 23-127 (128)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 1.1E-22 2.3E-27 180.7 10.9 96 452-548 3-104 (106)
31 cd05520 Bromo_polybromo_III Br 99.9 8.6E-23 1.9E-27 180.4 10.1 82 466-548 21-102 (103)
32 cd05517 Bromo_polybromo_II Bro 99.9 8.5E-23 1.8E-27 180.4 9.6 94 453-547 2-101 (103)
33 cd05518 Bromo_polybromo_IV Bro 99.9 2E-22 4.2E-27 178.2 11.0 98 450-548 3-102 (103)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.1E-21 4.6E-26 171.7 10.5 93 455-548 5-103 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 3.9E-21 8.4E-26 170.9 11.0 96 452-550 2-103 (106)
36 cd04369 Bromodomain Bromodomai 99.8 5.7E-21 1.2E-25 161.1 9.9 95 454-549 3-99 (99)
37 PF00439 Bromodomain: Bromodom 99.8 9.5E-21 2.1E-25 158.5 9.1 84 456-540 1-84 (84)
38 cd05492 Bromo_ZMYND11 Bromodom 99.8 7.7E-20 1.7E-24 163.5 11.2 99 454-553 3-107 (109)
39 cd05526 Bromo_polybromo_VI Bro 99.7 2.7E-17 5.9E-22 147.2 10.3 100 451-553 3-108 (110)
40 KOG1245 Chromatin remodeling c 99.7 1.7E-17 3.6E-22 198.1 7.9 98 456-555 1306-1403(1404)
41 PRK07757 acetyltransferase; Pr 99.4 3E-12 6.5E-17 116.6 14.8 107 255-377 42-150 (152)
42 PF13508 Acetyltransf_7: Acety 99.3 4.4E-12 9.5E-17 104.4 7.9 77 253-335 2-78 (79)
43 PF13673 Acetyltransf_10: Acet 99.2 1.1E-10 2.4E-15 100.8 13.0 88 240-334 30-117 (117)
44 PRK10146 aminoalkylphosphonic 99.2 7.2E-11 1.6E-15 105.8 11.3 91 245-336 38-135 (144)
45 PF00583 Acetyltransf_1: Acety 99.2 5.9E-11 1.3E-15 96.7 9.0 75 260-335 2-83 (83)
46 PTZ00330 acetyltransferase; Pr 99.2 4E-10 8.6E-15 101.3 13.9 123 208-336 6-138 (147)
47 COG1246 ArgA N-acetylglutamate 99.2 7.7E-11 1.7E-15 111.1 8.8 101 243-349 33-135 (153)
48 cd05494 Bromodomain_1 Bromodom 99.2 1.8E-11 3.9E-16 110.5 3.6 76 454-529 6-89 (114)
49 PRK03624 putative acetyltransf 99.1 6.7E-10 1.5E-14 97.5 12.6 121 209-337 3-128 (140)
50 TIGR03827 GNAT_ablB putative b 99.1 8.1E-10 1.7E-14 111.7 14.5 131 208-343 115-249 (266)
51 PRK10140 putative acetyltransf 99.1 6.8E-10 1.5E-14 101.0 12.1 136 207-344 2-146 (162)
52 TIGR01575 rimI ribosomal-prote 99.1 9.8E-10 2.1E-14 95.6 12.6 94 241-337 18-114 (131)
53 PRK12308 bifunctional arginino 99.1 3.6E-10 7.8E-15 127.2 12.4 99 255-367 504-602 (614)
54 TIGR01890 N-Ac-Glu-synth amino 99.1 5.4E-10 1.2E-14 120.6 11.4 101 242-348 314-416 (429)
55 PRK07922 N-acetylglutamate syn 99.1 1.2E-09 2.7E-14 103.5 11.9 79 254-336 45-124 (169)
56 PF13527 Acetyltransf_9: Acety 99.1 1.8E-09 3.8E-14 95.2 11.9 80 253-335 40-125 (127)
57 COG0456 RimI Acetyltransferase 99.1 1.3E-09 2.8E-14 100.8 11.1 95 241-336 42-151 (177)
58 KOG0955 PHD finger protein BR1 99.0 3.4E-10 7.5E-15 132.2 7.9 102 451-553 565-666 (1051)
59 PRK10314 putative acyltransfer 99.0 1.3E-09 2.8E-14 101.9 8.8 83 254-336 48-131 (153)
60 cd05491 Bromo_TBP7_like Bromod 99.0 4E-10 8.6E-15 102.2 4.7 42 490-532 63-104 (119)
61 KOG0008 Transcription initiati 99.0 3.2E-10 6.8E-15 132.6 5.1 97 454-551 1385-1481(1563)
62 PLN02706 glucosamine 6-phospha 99.0 4.1E-09 8.8E-14 95.8 11.1 81 255-336 54-141 (150)
63 PLN02825 amino-acid N-acetyltr 99.0 2.2E-09 4.8E-14 118.7 11.1 104 237-346 394-499 (515)
64 PRK13688 hypothetical protein; 99.0 3.8E-09 8.2E-14 99.9 11.0 105 226-336 14-130 (156)
65 PRK09491 rimI ribosomal-protei 99.0 4.1E-09 8.9E-14 95.6 10.2 102 254-360 40-144 (146)
66 TIGR02382 wecD_rffC TDP-D-fuco 98.9 2.4E-09 5.2E-14 102.6 8.8 80 255-336 99-182 (191)
67 PHA00673 acetyltransferase dom 98.9 9.4E-09 2E-13 97.5 12.4 93 243-336 44-143 (154)
68 PF13420 Acetyltransf_4: Acety 98.9 1.7E-08 3.7E-13 91.7 13.0 99 243-343 39-143 (155)
69 PRK10514 putative acetyltransf 98.9 2E-08 4.3E-13 90.5 12.6 75 256-339 51-126 (145)
70 PRK05279 N-acetylglutamate syn 98.9 7.2E-09 1.6E-13 112.2 10.9 91 255-347 335-427 (441)
71 cd02169 Citrate_lyase_ligase C 98.9 4.6E-09 9.9E-14 109.0 8.7 70 260-336 12-81 (297)
72 PRK09831 putative acyltransfer 98.8 9.4E-09 2E-13 94.0 8.4 76 254-341 53-128 (147)
73 TIGR00124 cit_ly_ligase [citra 98.8 1.9E-08 4E-13 106.0 11.3 76 254-336 31-106 (332)
74 KOG1827 Chromatin remodeling c 98.8 7.6E-09 1.6E-13 115.4 8.3 100 449-549 54-155 (629)
75 PRK10975 TDP-fucosamine acetyl 98.8 2.5E-08 5.5E-13 95.5 10.4 80 255-336 102-185 (194)
76 PF13523 Acetyltransf_8: Acety 98.8 6.5E-08 1.4E-12 88.3 11.4 126 211-336 1-138 (152)
77 TIGR02406 ectoine_EctA L-2,4-d 98.8 3.5E-08 7.6E-13 92.1 9.8 81 255-336 40-125 (157)
78 KOG1472 Histone acetyltransfer 98.8 7.6E-09 1.6E-13 117.0 6.0 87 447-541 289-375 (720)
79 TIGR03585 PseH pseudaminic aci 98.8 1E-07 2.3E-12 86.5 12.3 94 242-337 39-136 (156)
80 PRK10151 ribosomal-protein-L7/ 98.7 1.7E-07 3.8E-12 87.9 13.9 136 207-343 9-159 (179)
81 PRK15130 spermidine N1-acetylt 98.7 7.8E-08 1.7E-12 90.8 11.5 94 245-339 48-145 (186)
82 KOG0008 Transcription initiati 98.7 1.7E-08 3.7E-13 118.5 7.0 97 452-549 1262-1358(1563)
83 PHA01807 hypothetical protein 98.7 1.6E-07 3.5E-12 88.8 12.2 106 226-332 17-136 (153)
84 KOG0386 Chromatin remodeling c 98.7 2.3E-08 4.9E-13 115.2 6.8 99 455-554 1028-1132(1157)
85 TIGR01686 FkbH FkbH-like domai 98.7 2.1E-07 4.7E-12 96.8 13.2 122 209-336 187-318 (320)
86 PRK10562 putative acetyltransf 98.7 8.3E-08 1.8E-12 87.3 8.4 77 252-336 46-122 (145)
87 TIGR03448 mycothiol_MshD mycot 98.6 3E-07 6.5E-12 92.8 12.5 92 240-336 30-125 (292)
88 PRK10809 ribosomal-protein-S5- 98.6 1E-06 2.2E-11 84.0 13.4 83 253-336 74-163 (194)
89 TIGR03103 trio_acet_GNAT GNAT- 98.6 4.9E-07 1.1E-11 101.0 12.7 94 242-336 111-214 (547)
90 KOG3139 N-acetyltransferase [G 98.5 1E-06 2.2E-11 83.9 12.5 112 225-337 26-144 (165)
91 COG1247 Sortase and related ac 98.5 8.9E-07 1.9E-11 85.3 11.1 107 254-364 52-166 (169)
92 TIGR03448 mycothiol_MshD mycot 98.5 4.3E-07 9.3E-12 91.7 9.0 80 256-336 200-285 (292)
93 PRK01346 hypothetical protein; 98.5 1E-06 2.2E-11 94.0 12.2 81 253-336 46-133 (411)
94 KOG3396 Glucosamine-phosphate 98.5 1.8E-06 4E-11 80.3 11.7 119 208-336 6-141 (150)
95 KOG1474 Transcription initiati 98.4 5.9E-08 1.3E-12 110.2 1.1 95 462-557 3-99 (640)
96 KOG3138 Predicted N-acetyltran 98.4 6.9E-07 1.5E-11 87.3 7.1 89 247-336 49-149 (187)
97 COG5076 Transcription factor i 98.3 1.2E-07 2.5E-12 101.0 0.6 211 323-552 147-363 (371)
98 COG3153 Predicted acetyltransf 98.3 4.8E-06 1E-10 80.5 11.3 102 253-365 45-153 (171)
99 PF08445 FR47: FR47-like prote 98.3 3.2E-06 7E-11 72.2 7.9 56 280-336 22-79 (86)
100 PF13302 Acetyltransf_3: Acety 98.2 7.6E-06 1.6E-10 72.6 10.1 124 209-335 2-142 (142)
101 KOG2488 Acetyltransferase (GNA 98.2 4.7E-06 1E-10 81.4 9.3 85 257-342 95-185 (202)
102 cd04301 NAT_SF N-Acyltransfera 98.2 8.5E-06 1.8E-10 60.4 8.5 62 257-319 2-64 (65)
103 KOG3216 Diamine acetyltransfer 98.2 3.8E-05 8.3E-10 72.9 14.1 129 207-336 2-143 (163)
104 PF14542 Acetyltransf_CG: GCN5 98.2 1.1E-05 2.5E-10 68.1 9.0 71 257-332 2-72 (78)
105 TIGR01211 ELP3 histone acetylt 98.1 8.1E-06 1.8E-10 90.9 9.0 81 255-336 412-513 (522)
106 PF13718 GNAT_acetyltr_2: GNAT 98.0 2.6E-05 5.6E-10 77.0 10.0 112 242-361 15-194 (196)
107 KOG1828 IRF-2-binding protein 98.0 1.4E-06 3.1E-11 92.2 -0.2 95 456-551 24-118 (418)
108 KOG1828 IRF-2-binding protein 98.0 6.4E-06 1.4E-10 87.5 4.3 88 454-543 211-298 (418)
109 KOG3397 Acetyltransferases [Ge 97.9 3.6E-05 7.9E-10 74.5 7.3 110 225-336 24-138 (225)
110 COG1670 RimL Acetyltransferase 97.7 0.00027 5.8E-09 64.7 10.2 79 263-342 77-161 (187)
111 PF12746 GNAT_acetyltran: GNAT 97.5 0.00059 1.3E-08 70.3 11.0 86 242-336 159-244 (265)
112 KOG3234 Acetyltransferase, (GN 97.5 0.00022 4.7E-09 68.2 6.8 74 262-336 50-128 (173)
113 COG3393 Predicted acetyltransf 97.5 0.00065 1.4E-08 69.7 9.9 83 252-336 175-259 (268)
114 COG3053 CitC Citrate lyase syn 97.4 0.00057 1.2E-08 71.1 9.1 79 256-341 38-117 (352)
115 COG2153 ElaA Predicted acyltra 97.3 0.00049 1.1E-08 65.1 6.7 78 257-336 52-133 (155)
116 COG0454 WecD Histone acetyltra 97.3 0.00028 6.1E-09 55.1 3.6 44 285-334 87-130 (156)
117 COG1444 Predicted P-loop ATPas 97.2 0.0015 3.3E-08 75.5 10.4 128 207-336 423-588 (758)
118 PF12568 DUF3749: Acetyltransf 97.2 0.0052 1.1E-07 57.1 11.2 103 224-336 13-122 (128)
119 PF13480 Acetyltransf_6: Acety 97.2 0.021 4.5E-07 50.4 14.9 113 200-317 11-131 (142)
120 KOG3235 Subunit of the major N 97.1 0.0017 3.7E-08 62.4 7.4 100 236-335 19-131 (193)
121 COG3981 Predicted acetyltransf 97.0 0.0014 3E-08 63.6 6.0 103 220-334 43-154 (174)
122 COG4552 Eis Predicted acetyltr 96.0 0.023 4.9E-07 60.8 8.1 109 223-336 10-124 (389)
123 KOG4135 Predicted phosphogluco 95.9 0.019 4.2E-07 54.8 6.4 104 203-336 58-167 (185)
124 COG2388 Predicted acetyltransf 95.9 0.026 5.7E-07 50.3 6.8 66 253-320 14-79 (99)
125 PRK13834 putative autoinducer 95.6 0.22 4.7E-06 49.6 12.8 143 210-362 2-181 (207)
126 cd05493 Bromo_ALL-1 Bromodomai 95.1 0.039 8.5E-07 51.6 5.4 64 491-555 59-122 (131)
127 TIGR03694 exosort_acyl putativ 95.0 0.29 6.2E-06 49.8 12.0 121 230-361 27-212 (241)
128 KOG4144 Arylalkylamine N-acety 94.4 0.024 5.2E-07 54.5 2.3 57 280-336 102-158 (190)
129 PF00765 Autoind_synth: Autoin 94.4 0.37 8E-06 47.1 10.6 123 230-362 18-171 (182)
130 PF06852 DUF1248: Protein of u 93.8 1.4 2.9E-05 43.5 13.2 119 211-336 4-134 (181)
131 COG1243 ELP3 Histone acetyltra 93.5 0.07 1.5E-06 58.9 3.9 47 289-336 460-506 (515)
132 PF01233 NMT: Myristoyl-CoA:pr 92.0 0.56 1.2E-05 45.4 7.4 77 241-318 61-148 (162)
133 cd04264 DUF619-NAGS DUF619 dom 91.2 1 2.2E-05 40.2 7.8 32 277-308 32-63 (99)
134 cd04265 DUF619-NAGS-U DUF619 d 90.3 1.3 2.7E-05 39.6 7.4 31 278-308 33-63 (99)
135 COG5628 Predicted acetyltransf 90.2 1.4 2.9E-05 41.2 7.7 82 252-339 35-123 (143)
136 TIGR03019 pepcterm_femAB FemAB 89.6 6.6 0.00014 41.0 13.5 110 200-317 144-256 (330)
137 PF08444 Gly_acyl_tr_C: Aralky 89.4 0.62 1.4E-05 41.0 4.7 68 262-335 7-76 (89)
138 KOG2535 RNA polymerase II elon 89.0 0.36 7.8E-06 51.8 3.5 48 289-336 497-544 (554)
139 COG3882 FkbH Predicted enzyme 87.5 2.6 5.5E-05 47.4 8.9 125 208-335 411-546 (574)
140 PF13880 Acetyltransf_13: ESCO 86.7 0.81 1.7E-05 38.6 3.6 29 280-308 6-34 (70)
141 TIGR03827 GNAT_ablB putative b 86.1 2.2 4.8E-05 43.4 7.2 65 294-365 20-84 (266)
142 KOG0644 Uncharacterized conser 84.2 0.6 1.3E-05 54.8 2.2 61 488-549 1050-1110(1113)
143 KOG2036 Predicted P-loop ATPas 80.4 1.1 2.5E-05 52.0 2.6 30 280-309 615-644 (1011)
144 COG3916 LasI N-acyl-L-homoseri 78.1 28 0.00061 35.2 11.2 122 230-363 25-180 (209)
145 PF05301 Mec-17: Touch recepto 76.4 12 0.00026 34.7 7.5 45 263-307 18-74 (120)
146 COG3375 Uncharacterized conser 71.5 26 0.00057 36.1 9.1 118 223-353 15-142 (266)
147 KOG0732 AAA+-type ATPase conta 68.1 2.8 6.1E-05 50.9 1.8 64 467-531 531-601 (1080)
148 PF09026 CENP-B_dimeris: Centr 67.6 1.7 3.8E-05 38.8 0.0 11 109-119 40-50 (101)
149 COG3818 Predicted acetyltransf 66.4 21 0.00045 34.1 6.7 59 277-336 82-145 (167)
150 KOG4264 Nucleo-cytoplasmic pro 60.9 8.4 0.00018 43.6 3.6 20 235-254 220-239 (694)
151 KOG2779 N-myristoyl transferas 60.6 15 0.00033 40.0 5.3 60 254-314 136-201 (421)
152 PF01853 MOZ_SAS: MOZ/SAS fami 59.8 34 0.00073 34.2 7.3 61 249-310 46-111 (188)
153 PF13444 Acetyltransf_5: Acety 59.7 15 0.00033 32.0 4.5 55 245-301 21-100 (101)
154 PF09026 CENP-B_dimeris: Centr 57.5 3.7 8.1E-05 36.7 0.2 12 84-95 9-20 (101)
155 PLN03238 probable histone acet 54.8 35 0.00076 36.2 6.8 60 250-310 122-186 (290)
156 PLN03239 histone acetyltransfe 50.6 33 0.0007 37.3 5.9 61 249-310 179-244 (351)
157 PTZ00064 histone acetyltransfe 49.7 29 0.00062 39.4 5.5 60 250-310 351-415 (552)
158 KOG1827 Chromatin remodeling c 47.3 3.3 7.1E-05 47.8 -2.2 75 470-545 214-288 (629)
159 PF04768 DUF619: Protein of un 45.8 1.5E+02 0.0032 29.0 9.2 83 241-329 51-134 (170)
160 PF14372 DUF4413: Domain of un 45.7 80 0.0017 27.9 6.7 49 504-552 3-51 (101)
161 PLN00104 MYST -like histone ac 45.3 24 0.00052 39.5 4.1 61 249-310 272-337 (450)
162 KOG0943 Predicted ubiquitin-pr 45.2 19 0.00042 44.6 3.5 15 225-239 1969-1983(3015)
163 PF15387 DUF4611: Domain of un 39.4 21 0.00046 31.9 2.0 21 94-114 64-84 (96)
164 KOG2747 Histone acetyltransfer 37.3 30 0.00065 38.1 3.2 28 282-309 263-290 (396)
165 cd03173 DUF619-like DUF619 dom 35.7 1.8E+02 0.0039 26.1 7.4 32 277-308 31-62 (98)
166 KOG1832 HIV-1 Vpr-binding prot 33.9 21 0.00045 43.1 1.4 12 86-97 1404-1415(1516)
167 PF04377 ATE_C: Arginine-tRNA- 33.0 4.1E+02 0.009 24.8 9.7 72 244-318 27-100 (128)
168 KOG0772 Uncharacterized conser 31.6 36 0.00077 38.8 2.7 32 328-369 441-472 (641)
169 KOG3130 Uncharacterized conser 31.2 25 0.00055 38.8 1.5 11 231-241 352-362 (514)
170 PRK04531 acetylglutamate kinas 30.2 2.8E+02 0.006 30.7 9.2 68 230-309 272-340 (398)
171 KOG0644 Uncharacterized conser 29.3 36 0.00079 40.8 2.4 65 473-539 87-181 (1113)
172 TIGR03391 FeS_syn_CsdE cystein 28.1 28 0.00061 32.9 1.0 95 220-341 26-123 (138)
173 PF02388 FemAB: FemAB family; 27.2 1.6E+02 0.0036 32.2 6.9 88 254-354 35-146 (406)
174 PRK14852 hypothetical protein; 26.6 3E+02 0.0065 34.1 9.3 92 252-353 73-186 (989)
175 COG5665 NOT5 CCR4-NOT transcri 26.4 1.3E+02 0.0029 33.3 5.8 34 10-43 196-229 (548)
176 KOG2696 Histone acetyltransfer 24.3 83 0.0018 34.6 3.8 36 282-317 220-255 (403)
177 PRK02983 lysS lysyl-tRNA synth 22.5 1.1E+03 0.023 29.8 13.1 129 186-317 348-481 (1094)
178 cd04266 DUF619-NAGS-FABP DUF61 22.4 4.3E+02 0.0093 24.2 7.5 31 277-307 37-68 (108)
179 PRK11611 enhanced serine sensi 21.6 2E+02 0.0043 30.0 5.8 116 183-303 94-226 (246)
180 PF10446 DUF2457: Protein of u 20.8 51 0.0011 36.9 1.4 9 486-494 383-391 (458)
181 TIGR02606 antidote_CC2985 puta 20.1 1.5E+02 0.0031 24.7 3.7 28 495-523 12-39 (69)
182 PF02388 FemAB: FemAB family; 20.0 6.2E+02 0.013 27.8 9.6 69 263-334 302-378 (406)
No 1
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1e-67 Score=584.04 Aligned_cols=348 Identities=47% Similarity=0.826 Sum_probs=324.6
Q ss_pred chhhHHHHHHHHcCceEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEECCe-EEEE
Q 008580 194 SAREELLKREEEAGNLKFVCLSNDGI----DEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNV-VVGG 268 (561)
Q Consensus 194 ~~r~~~~~~ee~~g~i~f~vv~nd~~----~~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~~g~-VIGG 268 (561)
..|++.+..||..|.|.|+||.|+.+ ...++||++++|+|++|||+||++||.|||||..|++++++++++ ||||
T Consensus 355 ~~n~~~~n~ee~~~~~~~~vv~~~~s~~~~~~~~~~li~~~~~f~~qL~empkEyi~rlv~d~~h~~~~~~~d~~g~vgg 434 (720)
T KOG1472|consen 355 WRNCEKYNSEESHGLIEFAVIMNSKSLALIKEIPIELIGLRNEFSKQLPEMPKEYISRLVFDTSHHVMARIKDNEGVVGG 434 (720)
T ss_pred HhcchhhccccchhhhhhhhhhccCcHhHhccchhhhccchhHHHhhcccchHHHHHhhccccccccceeeccccccccc
Confidence 45899999999999999999999988 788999999999999999999999999999999999999999876 9999
Q ss_pred EEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCccccccccceeeee
Q 008580 269 ITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGY 348 (561)
Q Consensus 269 I~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk~i~l~~~~w~G~ 348 (561)
||+|+|+.++|.||+||||+.+.|++|||++||+|+++|.+....+.+++||||+.|++||+||||+++|.+++.+|.||
T Consensus 435 i~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~~aigyfkkqgfs~ei~~~~~~~~g~ 514 (720)
T KOG1472|consen 435 ICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADEGAIGYFKKQGFSKEIKFEKSPYVGY 514 (720)
T ss_pred cccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhhcccccccCccchhhcccccCcCccc
Confidence 99999999999999999999999999999999999999999843499999999999999999999999999999999999
Q ss_pred eecCCCceeEeeeeCCCCCccchhHHHH-HHHHHHHHHHH-HhhccccccCCCcccccccCCCccccCCCCCCcccccCC
Q 008580 349 IKDYDGGILMECKIDPKLPYTDLSTMIR-RQRQAIDEKIR-ELSNCHIVYPGIDFQKKEAGVPKKIIKVEDIPGLREAGW 426 (561)
Q Consensus 349 IKdYegatLM~C~l~p~i~Y~~~~~~i~-~Qk~~i~~~i~-~~s~~~iVypGL~~~k~e~g~p~k~i~~~~IPGl~EaGw 426 (561)
||+|+|||||.|.++|+|+|+++..++. .|+..+.++|. .+..+++|||||++++. + .+.+.+..|||++|+||
T Consensus 515 ikdye~~tl~~c~l~~~i~~t~~~~~~~~~~~a~l~~~i~~~~~~~~kv~~gl~~~~~--~--~~~~~~~~iPg~~E~~~ 590 (720)
T KOG1472|consen 515 IKDYEGGTLMPCELLPEIPYTELSAIVEHPQKAKLGREIEPEIDEYFKVYPGLECFKD--G--VPQIPPRKIPGFRESGW 590 (720)
T ss_pred cccccCccccchhhccCcchhhhhhhhhhhHHHHHHHhhccccccccccccccccccc--c--ccccCcccCCCchhhcc
Confidence 9999999999999999999999999999 99999999998 67889999999999875 3 36789999999999999
Q ss_pred CCCCCCCccccccccCCCCcccHHHHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCC
Q 008580 427 TPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQY 506 (561)
Q Consensus 427 tp~~~~~sr~r~~~~s~d~~~~~~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~Y 506 (561)
.|.....++. -.....+...+..+|..|.+|..+|||.+||+..++||||++|++||||.||+.+|..+.
T Consensus 591 ~~~~~~~r~~---------~~~~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~- 660 (720)
T KOG1472|consen 591 KPEKESYRQE---------YKKPGKLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQ- 660 (720)
T ss_pred CcchHHHHhh---------hcccchhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccc-
Confidence 9987654421 012346778899999999999999999999999999999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 008580 507 YVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSGLHS 555 (561)
Q Consensus 507 Y~S~~eF~aDvrLIF~Ncr~YN~pdS~~yk~A~~Lek~Fe~~lkeil~~ 555 (561)
|.....|++|+.+||.||+.||+.++.+|++|..|+.+|..++++.+..
T Consensus 661 y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~~i~~ 709 (720)
T KOG1472|consen 661 YTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNELILR 709 (720)
T ss_pred hhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhhhhhh
Confidence 8999999999999999999999999999999999999999998877543
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.3e-27 Score=207.55 Aligned_cols=103 Identities=38% Similarity=0.631 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcCCCCCC--CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008580 449 QKHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (561)
Q Consensus 449 ~~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~--evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~ 526 (561)
..+++.+++.||+.|++|+.+|||++||++. ++||||++|++||||+||++||+++. |.++++|.+||+|||.||+.
T Consensus 3 ~~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~-Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05497 3 TNQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNY-YWSASECIQDFNTMFTNCYI 81 (107)
T ss_pred cHHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999999987 69999999999999999999999976 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhh
Q 008580 527 YNSPDTIYYKCATRLESHFQSKVQSG 552 (561)
Q Consensus 527 YN~pdS~~yk~A~~Lek~Fe~~lkei 552 (561)
||+++|.++.+|..|+++|+++++++
T Consensus 82 yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 82 YNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999864
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.2e-26 Score=204.75 Aligned_cols=104 Identities=32% Similarity=0.630 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhccC-CCCCCCcCCCCCC--CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008580 450 KHLTAFMRSLLKSMHDH-VDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (561)
Q Consensus 450 ~~L~~~~~~lL~~L~~h-~~A~pF~~PVd~~--evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~ 526 (561)
++|++.|..+++.|.++ +.+|||++||++. ++||||++|++||||+||++||+++. |.++.+|.+|++|||.||+.
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~-Y~s~~ef~~D~~li~~Na~~ 80 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQ-YQDPWQYVDDVWLMFDNAWL 80 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 46889999999999999 9999999999987 79999999999999999999999987 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 008580 527 YNSPDTIYYKCATRLESHFQSKVQSGLH 554 (561)
Q Consensus 527 YN~pdS~~yk~A~~Lek~Fe~~lkeil~ 554 (561)
||+++|.++++|.+|+++|+++++.+++
T Consensus 81 yN~~~s~i~~~a~~l~~~F~~~~~~~~~ 108 (108)
T cd05495 81 YNRKTSRVYKYCTKLAEVFEQEIDPVMQ 108 (108)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988764
No 4
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2e-26 Score=208.55 Aligned_cols=106 Identities=28% Similarity=0.504 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhC
Q 008580 449 QKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYN 528 (561)
Q Consensus 449 ~~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN 528 (561)
...|+..|..||+.|++|+.+|||++||++..+||||++|++||||+||++||+++. |.++++|..||+|||.||+.||
T Consensus 3 ~~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~-Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGN-YDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHC
Confidence 357899999999999999999999999999999999999999999999999999976 8999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhcCC
Q 008580 529 SP-DTIYYKCATRLESHFQSKVQSGLHS 555 (561)
Q Consensus 529 ~p-dS~~yk~A~~Lek~Fe~~lkeil~~ 555 (561)
++ +|.+|.+|..|+++|++++++++..
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 8999999999999999999988764
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.8e-26 Score=201.84 Aligned_cols=95 Identities=28% Similarity=0.557 Sum_probs=91.5
Q ss_pred HHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 008580 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTI 533 (561)
Q Consensus 454 ~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~ 533 (561)
+.|..||+.|++++.+|||+.||++.++||||++|++||||+||++||+++. |.++++|.+||+|||.||+.||+++|.
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGS-YSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 5689999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008580 534 YYKCATRLESHFQSKV 549 (561)
Q Consensus 534 ~yk~A~~Lek~Fe~~l 549 (561)
++.+|.+|+++|.+++
T Consensus 82 i~~~a~~le~~f~~~~ 97 (97)
T cd05505 82 VLSCMRKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998763
No 6
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.9e-26 Score=199.72 Aligned_cols=102 Identities=28% Similarity=0.387 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCC
Q 008580 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNS 529 (561)
Q Consensus 450 ~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~ 529 (561)
..|+..|..+++.|.+|+.++||++||++..+|+||++|++||||+||++||+++. |.++++|.+||+|||.||+.||+
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGT-IRSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCC
Confidence 35889999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 008580 530 PDTIYYKCATRLESHFQSKVQSG 552 (561)
Q Consensus 530 pdS~~yk~A~~Lek~Fe~~lkei 552 (561)
++|.++.+|..|++.|.++++..
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999998764
No 7
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.1e-25 Score=197.56 Aligned_cols=97 Identities=31% Similarity=0.506 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCC
Q 008580 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNS 529 (561)
Q Consensus 450 ~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~ 529 (561)
++|..+|+.+++.|+ |+.+|||++||++.++||||++|++||||+||++||+++. |.++++|.+|++|||.||+.||+
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~Dv~LI~~Na~~YN~ 79 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKA-YGSTDAFLADAKWILHNAIIYNG 79 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCC
Confidence 468899999999999 9999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 008580 530 PDTIYYKCATRLESHFQSK 548 (561)
Q Consensus 530 pdS~~yk~A~~Lek~Fe~~ 548 (561)
++|.++.+|..|.+.|+..
T Consensus 80 ~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 80 GDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 8
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.8e-25 Score=200.35 Aligned_cols=105 Identities=29% Similarity=0.441 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHHHhccC-CCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008580 448 NQKHLTAFMRSLLKSMHDH-VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (561)
Q Consensus 448 ~~~~L~~~~~~lL~~L~~h-~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~ 526 (561)
.+.+|...|..||+.|+++ +.+|||++||++.++||||++|++||||+||++||+++. |.++++|.+|++|||.||+.
T Consensus 4 ~~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~-Y~s~~ef~~D~~Li~~N~~~ 82 (112)
T cd05510 4 GQEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQ-YKSKAEFVDDLNLIWKNCLL 82 (112)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999 899999999999999999999999999999999999987 89999999999999999999
Q ss_pred hCCCCC-HHHHHHHHHHHHHHHHHHhhc
Q 008580 527 YNSPDT-IYYKCATRLESHFQSKVQSGL 553 (561)
Q Consensus 527 YN~pdS-~~yk~A~~Lek~Fe~~lkeil 553 (561)
||++++ .++++|..|+++|++.+..+.
T Consensus 83 yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 83 YNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 999866 688999999999999998774
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.7e-25 Score=199.85 Aligned_cols=104 Identities=36% Similarity=0.641 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008580 448 NQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (561)
Q Consensus 448 ~~~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~Y 527 (561)
..+.....|..||+.|.+++.+|||.+||++..+||||++|++||||+||++||+.+. |.++++|.+||+|||.||+.|
T Consensus 9 ~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~-Y~s~~~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 9 HGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGE-YKLAEEFLSDIQLVFSNCFLY 87 (115)
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 008580 528 NSPDTIYYKCATRLESHFQSKVQSG 552 (561)
Q Consensus 528 N~pdS~~yk~A~~Lek~Fe~~lkei 552 (561)
|+++|.++++|..|+++|+++++++
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 10
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.8e-25 Score=196.56 Aligned_cols=104 Identities=36% Similarity=0.544 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHhhhC
Q 008580 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESE--QYYVTFEMFVADVKRMFANARTYN 528 (561)
Q Consensus 451 ~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g--~YY~S~~eF~aDvrLIF~Ncr~YN 528 (561)
..++.|..||..|.+|+.+|||++||++ .+|+||++|++||||+||++||+.+ .+|.++++|.+||+|||.||+.||
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4567899999999999999999999999 8999999999999999999999984 348999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 008580 529 SPDTIYYKCATRLESHFQSKVQSGLHS 555 (561)
Q Consensus 529 ~pdS~~yk~A~~Lek~Fe~~lkeil~~ 555 (561)
+++|.++++|..|++.|+++++++++.
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999874
No 11
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.1e-25 Score=194.48 Aligned_cols=95 Identities=39% Similarity=0.716 Sum_probs=92.0
Q ss_pred HHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 008580 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTI 533 (561)
Q Consensus 454 ~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~ 533 (561)
..|+.||+.|.+++.++||+.||++..+|+||++|++||||+||++||+++. |.++++|.+||+|||.||+.||+++|.
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQ-YKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4699999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008580 534 YYKCATRLESHFQSKV 549 (561)
Q Consensus 534 ~yk~A~~Lek~Fe~~l 549 (561)
++++|..|+++|+++|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.1e-25 Score=194.00 Aligned_cols=100 Identities=51% Similarity=0.936 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008580 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (561)
Q Consensus 452 L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pd 531 (561)
++..|..+++.|.+|+.++||++||++..+|+||++|++||||+||++||+++. |.++++|..||+|||.||+.||+++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~-Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGY-YVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 567899999999999999999999999999999999999999999999999986 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 008580 532 TIYYKCATRLESHFQSKVQSG 552 (561)
Q Consensus 532 S~~yk~A~~Lek~Fe~~lkei 552 (561)
|.++++|..|++.|+++++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999864
No 13
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=1.6e-24 Score=194.11 Aligned_cols=104 Identities=34% Similarity=0.615 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 008580 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSP 530 (561)
Q Consensus 451 ~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~p 530 (561)
+|+..|+.+++.|++|+.+|||.+||++.++||||++|++||||+||++||+++. |.++++|.+||+|||.||+.||++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~-Y~s~~ef~~Dv~li~~Na~~yN~~ 81 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQ-YLTAKDFLKDIDLIVTNALEYNPD 81 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCC-cCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred C----CHHHHHHHHHHHHHHHHHHhhcCC
Q 008580 531 D----TIYYKCATRLESHFQSKVQSGLHS 555 (561)
Q Consensus 531 d----S~~yk~A~~Lek~Fe~~lkeil~~ 555 (561)
+ +.++.+|..|++.|.+++.++++.
T Consensus 82 ~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 82 RDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5 699999999999999999988764
No 14
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.1e-24 Score=193.37 Aligned_cols=100 Identities=28% Similarity=0.481 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhccCCC------CCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008580 452 LTAFMRSLLKSMHDHVD------AWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (561)
Q Consensus 452 L~~~~~~lL~~L~~h~~------A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr 525 (561)
|++.|+.||+.|.++.. +|||.+||+...+||||++|++||||+||++||+++. |.++++|..||+|||.||+
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHK-YRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHH
Confidence 56778888888887755 8999999999999999999999999999999999987 8999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 008580 526 TYNSPDTIYYKCATRLESHFQSKVQSG 552 (561)
Q Consensus 526 ~YN~pdS~~yk~A~~Lek~Fe~~lkei 552 (561)
.||+++|.+|.+|..|+++|+++++++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998764
No 15
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.2e-24 Score=187.87 Aligned_cols=96 Identities=39% Similarity=0.632 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhccCCCCCCCcCCCCCC--CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 008580 453 TAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSP 530 (561)
Q Consensus 453 ~~~~~~lL~~L~~h~~A~pF~~PVd~~--evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~p 530 (561)
.+.|..||+.|++++.+|+|..||++. .+|+||++|++||||+||++||+++. |.++++|..|++|||.||+.||++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~-Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGE-YSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCCC
Confidence 467999999999999999999999976 79999999999999999999999987 899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 008580 531 DTIYYKCATRLESHFQSKV 549 (561)
Q Consensus 531 dS~~yk~A~~Lek~Fe~~l 549 (561)
+|.++++|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999875
No 16
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.6e-24 Score=188.47 Aligned_cols=92 Identities=42% Similarity=0.720 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008580 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (561)
Q Consensus 452 L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pd 531 (561)
|...|+.+|+.|++++.+|+|.+||++.++||||++|++||||+||++||+++. |.++++|..||+|||.||+.||+++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQR-YRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 567899999999999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 008580 532 TIYYKCATRLESH 544 (561)
Q Consensus 532 S~~yk~A~~Lek~ 544 (561)
|.+|++|.+|++.
T Consensus 81 s~~~~~A~~l~~~ 93 (98)
T cd05512 81 TIFYRAAVRLRDQ 93 (98)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999875
No 17
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.3e-24 Score=188.06 Aligned_cols=96 Identities=24% Similarity=0.318 Sum_probs=90.8
Q ss_pred HHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 008580 455 FMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIY 534 (561)
Q Consensus 455 ~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~ 534 (561)
.|+.||..|.+++.+++|..+ +..+||||++|++||||+||++||.++. |.++++|.+||+|||.||+.||+++ .+
T Consensus 6 ~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~-Y~s~~ef~~D~~Lif~N~~~yN~~~-~~ 81 (102)
T cd05501 6 KCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERV-YHTVEGFVRDMRLIFHNHKLFYKDD-DF 81 (102)
T ss_pred HHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHcCCC-HH
Confidence 499999999999999999763 4599999999999999999999999988 8999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 008580 535 YKCATRLESHFQSKVQSGLH 554 (561)
Q Consensus 535 yk~A~~Lek~Fe~~lkeil~ 554 (561)
+++|..|++.|++++++++.
T Consensus 82 ~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 82 GQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998874
No 18
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.3e-24 Score=188.21 Aligned_cols=95 Identities=38% Similarity=0.691 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcc---CCCCCCCcCCCCCC--CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhC
Q 008580 454 AFMRSLLKSMHD---HVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYN 528 (561)
Q Consensus 454 ~~~~~lL~~L~~---h~~A~pF~~PVd~~--evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN 528 (561)
+.|..||+.|.+ ++.+|||++||++. .+||||++|++||||++|++||+++. |.++++|.+||+|||.||+.||
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~-Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQ-YQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHC
Confidence 468888888887 46799999999998 99999999999999999999999987 8999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 008580 529 SPDTIYYKCATRLESHFQSKV 549 (561)
Q Consensus 529 ~pdS~~yk~A~~Lek~Fe~~l 549 (561)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.9e-24 Score=187.55 Aligned_cols=93 Identities=37% Similarity=0.554 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008580 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (561)
Q Consensus 452 L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pd 531 (561)
|+.+|..||+.|++++.+++|+.||+...+||||++|++||||+||++||+++. |.++++|.+|++|||.||+.||+++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~-Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNND-YQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 677899999999999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 008580 532 TIYYKCATRLESHF 545 (561)
Q Consensus 532 S~~yk~A~~Lek~F 545 (561)
|.+|++|.+|...-
T Consensus 81 s~~~~~A~~L~~~~ 94 (98)
T cd05513 81 TIYYKAAKKLLHSG 94 (98)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999997653
No 20
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.7e-24 Score=187.25 Aligned_cols=99 Identities=36% Similarity=0.625 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcCCCCCC--CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008580 450 KHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (561)
Q Consensus 450 ~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~--evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~Y 527 (561)
+.+++.|..+|+.|++++.++||+.||++. .+|+||++|++||||+||++||+++. |.++++|..||+|||.||+.|
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~-Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNV-YTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999976 79999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 008580 528 NSPDTIYYKCATRLESHFQSKV 549 (561)
Q Consensus 528 N~pdS~~yk~A~~Lek~Fe~~l 549 (561)
|+++|.++.+|..|++.|++.+
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999853
No 21
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.8e-24 Score=190.89 Aligned_cols=102 Identities=31% Similarity=0.657 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 008580 453 TAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDT 532 (561)
Q Consensus 453 ~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS 532 (561)
...++.|++.|++++.++||..||++..+|+||++|++||||+||++||+++. |.++++|.+|++|||.||+.||+++|
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~-Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHK-YQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999999999999999999999999999986 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 008580 533 IYYKCATRLESHFQSKVQSGLHS 555 (561)
Q Consensus 533 ~~yk~A~~Lek~Fe~~lkeil~~ 555 (561)
.++++|..|++.|+++++++...
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEK 103 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999987543
No 22
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.5e-24 Score=186.47 Aligned_cols=96 Identities=38% Similarity=0.696 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhccC---CCCCCCcCCCCCC--CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008580 453 TAFMRSLLKSMHDH---VDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (561)
Q Consensus 453 ~~~~~~lL~~L~~h---~~A~pF~~PVd~~--evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~Y 527 (561)
.+.|..||+.|.++ +.++||++||++. ++|+||++|++||||++|++||+++. |.++++|..||+|||.||+.|
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~-Y~s~~ef~~D~~li~~Na~~y 80 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNRE-YADAQEFAADVRLMFSNCYKY 80 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999 8999999999986 69999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 008580 528 NSPDTIYYKCATRLESHFQSKV 549 (561)
Q Consensus 528 N~pdS~~yk~A~~Lek~Fe~~l 549 (561)
|+++|.++.+|..|++.|+++|
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999875
No 23
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.90 E-value=5.2e-24 Score=238.84 Aligned_cols=109 Identities=39% Similarity=0.592 Sum_probs=101.7
Q ss_pred ccHHHHHHHHHHHHHHhccCCCCCCCcCCCCCC--CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 008580 447 SNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANA 524 (561)
Q Consensus 447 ~~~~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~--evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Nc 524 (561)
.....+...|..||+.|+.|+.+|||+.|||+. .+||||+||++||||+||++||.++. |.++.+|.+||+|||.||
T Consensus 218 ~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~-Y~~~~eF~~DVRL~F~Nc 296 (640)
T KOG1474|consen 218 KLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGE-YKSAEEFAADVRLTFDNC 296 (640)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccc-cCCHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999999987 79999999999999999999999976 899999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 008580 525 RTYNSPDTIYYKCATRLESHFQSKVQSGLHSS 556 (561)
Q Consensus 525 r~YN~pdS~~yk~A~~Lek~Fe~~lkeil~~~ 556 (561)
++||++++++|.||..|++.|+.+|..+....
T Consensus 297 m~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~ 328 (640)
T KOG1474|consen 297 MTYNPEGSDVYAMAKKLQEVFEERWASMPLEI 328 (640)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999876654
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.4e-23 Score=184.74 Aligned_cols=97 Identities=36% Similarity=0.560 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhc------cCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008580 452 LTAFMRSLLKSMH------DHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (561)
Q Consensus 452 L~~~~~~lL~~L~------~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr 525 (561)
|++.|+.|++.|. .++.+++|.+||+...+|+||++|++||||++|++||+.+. |.++.+|..||+|||.||+
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~-Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRA-YKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHH
Confidence 3566777777777 45668999999999999999999999999999999999987 8999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 008580 526 TYNSPDTIYYKCATRLESHFQSKV 549 (561)
Q Consensus 526 ~YN~pdS~~yk~A~~Lek~Fe~~l 549 (561)
.||+++|.++.+|..|++.|++++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998763
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.5e-23 Score=184.08 Aligned_cols=96 Identities=28% Similarity=0.511 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcc------CCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008580 454 AFMRSLLKSMHD------HVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (561)
Q Consensus 454 ~~~~~lL~~L~~------h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~Y 527 (561)
+.|+.|++.|.+ ++.+++|.+||+..++||||++|++||||+||++||+++. |.++++|..||+|||.||+.|
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~-Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQ-YQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 455666665554 4678999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 008580 528 NSPDTIYYKCATRLESHFQSKVQ 550 (561)
Q Consensus 528 N~pdS~~yk~A~~Lek~Fe~~lk 550 (561)
|+++|.+|++|..|++.|.++.+
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 26
>smart00297 BROMO bromo domain.
Probab=99.89 E-value=6.9e-23 Score=178.71 Aligned_cols=103 Identities=47% Similarity=0.872 Sum_probs=99.2
Q ss_pred cHHHHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008580 448 NQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (561)
Q Consensus 448 ~~~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~Y 527 (561)
.++.+..+|..|++.+.+++.+++|.+||++..+|+||++|++||||++|++||+++. |.++++|.+||++||.||+.|
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~-Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 4 LQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGK-YSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 008580 528 NSPDTIYYKCATRLESHFQSKVQS 551 (561)
Q Consensus 528 N~pdS~~yk~A~~Lek~Fe~~lke 551 (561)
|++++.++++|..|++.|++.+++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999876
No 27
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.89 E-value=5.1e-24 Score=224.91 Aligned_cols=223 Identities=35% Similarity=0.494 Sum_probs=177.9
Q ss_pred HHcCceEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEE-CCeEEEEEEEeeec-CCc--
Q 008580 204 EEAGNLKFVCLSNDGID-EHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIR-GNVVVGGITYRPYV-SQK-- 278 (561)
Q Consensus 204 e~~g~i~f~vv~nd~~~-~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~-~g~VIGGI~~R~f~-~~~-- 278 (561)
+..+...++.+.|+... .....+.+++++|+.|+..|+.+++.+.+++..+....... ....++++|++++. ...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 98 (371)
T COG5076 19 EEFGNELLRLVDNDSSPFPNAPEEEGSKNLFQKQLKRMPKEYITSIVDDREPGSMANVNDDLENVGGITYSPFEKNRPES 98 (371)
T ss_pred hhhhhhhhhccccCCCcccchhhhccccccchhhhcccchhhhhhhhcccccccccccCcchhcccCcccCCcccccccc
Confidence 77888899999999888 88999999999999999999999999999977665333333 46899999999876 334
Q ss_pred --eEEEEEEEeccCCcccChHHHHHHHHHH--HHHhhcCceEEEEccCCcchhhhhhcCCccccccccceeeeeeecCCC
Q 008580 279 --FGEIAFCAITADEQVKGYGTRLMNHLKQ--HARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDG 354 (561)
Q Consensus 279 --f~EI~f~AV~~~~QgKGyGt~Lmn~Lke--~ak~~~gi~~~lt~AD~~AigFYkKqGFsk~i~l~~~~w~G~IKdYeg 354 (561)
+.++++++.....+.+|+|+.++.+.+. .......+....
T Consensus 99 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~------------------------------------ 142 (371)
T COG5076 99 LRFDEIVFLAIESVTPESGLGSLLMAHLKTSVKKRKTPKIEDEL------------------------------------ 142 (371)
T ss_pred ccccceeccccccccccccccccccccchHHHHhhcCCcccchh------------------------------------
Confidence 8999999999999999999999988766 000000000000
Q ss_pred ceeEeeeeCCCCCccchhHHHHHHHHHHHHHHHHhhccccccCCCcccccccCCCccccCCCCCCcccccCCCCCCCCCc
Q 008580 355 GILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGVPKKIIKVEDIPGLREAGWTPDQWGHS 434 (561)
Q Consensus 355 atLM~C~l~p~i~Y~~~~~~i~~Qk~~i~~~i~~~s~~~iVypGL~~~k~e~g~p~k~i~~~~IPGl~EaGwtp~~~~~s 434 (561)
T Consensus 143 -------------------------------------------------------------------------------- 142 (371)
T COG5076 143 -------------------------------------------------------------------------------- 142 (371)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCcccHHHHHHHHHHHHHH--hccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHH
Q 008580 435 RFRTLTAATDGASNQKHLTAFMRSLLKS--MHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEM 512 (561)
Q Consensus 435 r~r~~~~s~d~~~~~~~L~~~~~~lL~~--L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~e 512 (561)
..+....++..+... -.....+++|+.+|++.++|+||.||+.||||.+|++||+.+. |.++++
T Consensus 143 -------------~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~-Y~s~ee 208 (371)
T COG5076 143 -------------LYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGR-YKSFEE 208 (371)
T ss_pred -------------HHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhh-hhhHHH
Confidence 011111111111111 1234667899999999999999999999999999999999988 899999
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 008580 513 FVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSGLHSS 556 (561)
Q Consensus 513 F~aDvrLIF~Ncr~YN~pdS~~yk~A~~Lek~Fe~~lkeil~~~ 556 (561)
|+.|++|||.||+.||++++.+|.+|..|++.|.+.++++....
T Consensus 209 f~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~ 252 (371)
T COG5076 209 FVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEM 252 (371)
T ss_pred HHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999876654
No 28
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=7.1e-23 Score=183.67 Aligned_cols=103 Identities=25% Similarity=0.435 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhccC------CCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008580 453 TAFMRSLLKSMHDH------VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (561)
Q Consensus 453 ~~~~~~lL~~L~~h------~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~ 526 (561)
.+.|..|++.|+++ +.+.+|.++|+...+||||++|++||||+||++||+++. |.++++|.+||+|||.||+.
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~-Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEE-YDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 45688888888864 445789999999999999999999999999999999987 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 008580 527 YNSPDTIYYKCATRLESHFQSKVQSGLHSS 556 (561)
Q Consensus 527 YN~pdS~~yk~A~~Lek~Fe~~lkeil~~~ 556 (561)
||+++|.++++|..|+++|++.++++++..
T Consensus 83 yN~~~s~~~~~A~~L~~~f~~~~~~~~~~~ 112 (113)
T cd05524 83 YYKPDSPEHKDACKLWELFLSARNEVLSGG 112 (113)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999988754
No 29
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.7e-22 Score=184.83 Aligned_cols=101 Identities=32% Similarity=0.418 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhc---cCCCCCCCcCCCCCC-CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008580 450 KHLTAFMRSLLKSMH---DHVDAWPFKEPVDAR-DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (561)
Q Consensus 450 ~~L~~~~~~lL~~L~---~h~~A~pF~~PVd~~-evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr 525 (561)
..++..|..+++.|. +++.++||..||++. .+|+||++|++||||+||++||+++. |.++++|..||+|||.||+
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~-Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRY-YRSLEALRHDVRLILSNAE 101 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHH
Confidence 445566667777777 899999999999999 99999999999999999999999975 8999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 008580 526 TYNSPDTIYYKCATRLESHFQSKVQS 551 (561)
Q Consensus 526 ~YN~pdS~~yk~A~~Lek~Fe~~lke 551 (561)
.||+++|.++++|.+|++.|.+.+..
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998764
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.1e-22 Score=180.74 Aligned_cols=96 Identities=28% Similarity=0.456 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcc------CCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008580 452 LTAFMRSLLKSMHD------HVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (561)
Q Consensus 452 L~~~~~~lL~~L~~------h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr 525 (561)
|...|+.||+.|.. +..+|||.++|++..+||||++|++||||+||++||+++. |.++++|..||.|||.||+
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~-Y~s~~ef~~D~~l~f~Na~ 81 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGY-YKTPEAFDSDMLKVFRNAE 81 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHH
Confidence 44556666665554 3567999999999999999999999999999999999987 8999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHH
Q 008580 526 TYNSPDTIYYKCATRLESHFQSK 548 (561)
Q Consensus 526 ~YN~pdS~~yk~A~~Lek~Fe~~ 548 (561)
.||+++|.++++|..|+++|++.
T Consensus 82 ~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 82 KYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999874
No 31
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=8.6e-23 Score=180.38 Aligned_cols=82 Identities=37% Similarity=0.638 Sum_probs=78.7
Q ss_pred CCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 008580 466 HVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHF 545 (561)
Q Consensus 466 h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~yk~A~~Lek~F 545 (561)
++.++||.+||+...+||||++|++||||+||++||+++. |.++++|..||+|||.||+.||+++|.++.+|..|+++|
T Consensus 21 ~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~-Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f 99 (103)
T cd05520 21 QLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGE-YETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLM 99 (103)
T ss_pred CCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHH
Q 008580 546 QSK 548 (561)
Q Consensus 546 e~~ 548 (561)
+++
T Consensus 100 ~~~ 102 (103)
T cd05520 100 QAK 102 (103)
T ss_pred HHh
Confidence 874
No 32
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=8.5e-23 Score=180.42 Aligned_cols=94 Identities=30% Similarity=0.527 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhccC------CCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008580 453 TAFMRSLLKSMHDH------VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (561)
Q Consensus 453 ~~~~~~lL~~L~~h------~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~ 526 (561)
+++|..|++.|.++ +.+++|.++|++.++||||++|++||||+||++||+++. |.++.+|..||+|||.||+.
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~-Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGY-YKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 34566666666654 557999999999999999999999999999999999876 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 008580 527 YNSPDTIYYKCATRLESHFQS 547 (561)
Q Consensus 527 YN~pdS~~yk~A~~Lek~Fe~ 547 (561)
||+++|.++++|..|++.|+.
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999985
No 33
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=2e-22 Score=178.19 Aligned_cols=98 Identities=34% Similarity=0.513 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHH--hccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008580 450 KHLTAFMRSLLKS--MHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (561)
Q Consensus 450 ~~L~~~~~~lL~~--L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~Y 527 (561)
++++.++..|++. ...+..+.+|..+|++..+||||++|++||||+||++||+++. |.++++|..||+|||.||+.|
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~-Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDK-YATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555543 2356778999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 008580 528 NSPDTIYYKCATRLESHFQSK 548 (561)
Q Consensus 528 N~pdS~~yk~A~~Lek~Fe~~ 548 (561)
|+++|.++.+|..|+++|+++
T Consensus 82 N~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999864
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.1e-21 Score=171.66 Aligned_cols=93 Identities=30% Similarity=0.552 Sum_probs=83.9
Q ss_pred HHHHHHHHhcc------CCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhC
Q 008580 455 FMRSLLKSMHD------HVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYN 528 (561)
Q Consensus 455 ~~~~lL~~L~~------h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN 528 (561)
.+..|++.|.+ ++.++||.++|+...+||||++|++||||++|++||+.+. |.++++|..||+|||.||+.||
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~-Y~s~~~f~~D~~li~~Na~~yn 83 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRK-YKSFDQFLNDLNLMFENAKLYN 83 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHHC
Confidence 34455554443 5788999999999999999999999999999999999987 8999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 008580 529 SPDTIYYKCATRLESHFQSK 548 (561)
Q Consensus 529 ~pdS~~yk~A~~Lek~Fe~~ 548 (561)
+++|.+|.+|..|++.|++.
T Consensus 84 ~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 84 ENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=3.9e-21 Score=170.85 Aligned_cols=96 Identities=31% Similarity=0.460 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhccC------CCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 008580 452 LTAFMRSLLKSMHDH------VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANAR 525 (561)
Q Consensus 452 L~~~~~~lL~~L~~h------~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr 525 (561)
|.+.|+.+++.|.+. +.+.+|..+++...+||||++|++||||+||++||++ |.++++|..|++|||.||+
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~---Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH---YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc---CCCHHHHHHHHHHHHHHHH
Confidence 455677777766654 4457999999999999999999999999999999996 7999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 008580 526 TYNSPDTIYYKCATRLESHFQSKVQ 550 (561)
Q Consensus 526 ~YN~pdS~~yk~A~~Lek~Fe~~lk 550 (561)
.||+++|.+|++|..|+++|.+++.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998875
No 36
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.84 E-value=5.7e-21 Score=161.12 Aligned_cols=95 Identities=44% Similarity=0.771 Sum_probs=90.1
Q ss_pred HHHHHHHHHhccC--CCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008580 454 AFMRSLLKSMHDH--VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (561)
Q Consensus 454 ~~~~~lL~~L~~h--~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pd 531 (561)
..|..+++.|..+ +.+++|..||++..+|+||++|++||||++|++||+++. |.++++|.+||++||.||+.||+++
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~-Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGE-YKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5688899999998 999999999999999999999999999999999999986 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 008580 532 TIYYKCATRLESHFQSKV 549 (561)
Q Consensus 532 S~~yk~A~~Lek~Fe~~l 549 (561)
+.++++|..|+..|++.+
T Consensus 82 ~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 82 SPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998753
No 37
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.83 E-value=9.5e-21 Score=158.47 Aligned_cols=84 Identities=48% Similarity=0.860 Sum_probs=79.3
Q ss_pred HHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHH
Q 008580 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYY 535 (561)
Q Consensus 456 ~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~y 535 (561)
|+.+|+.|.+|+.+++|..||+...+|+|+++|+.||||++|++||+++. |.++++|..||++||.||+.||+++|.+|
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~-Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~ 79 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGK-YKSIEEFEADVRLIFQNARRYNPPDSPIY 79 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTS-SSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccc-hhhHHHHHHHHHHHHHHHHHHCCCcCHHH
Confidence 78899999999999999999999999999999999999999999999987 89999999999999999999999999999
Q ss_pred HHHHH
Q 008580 536 KCATR 540 (561)
Q Consensus 536 k~A~~ 540 (561)
++|.+
T Consensus 80 ~~A~~ 84 (84)
T PF00439_consen 80 KAAEK 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99974
No 38
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=7.7e-20 Score=163.45 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcc-CCCCCCCcCCCCCC-----CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhh
Q 008580 454 AFMRSLLKSMHD-HVDAWPFKEPVDAR-----DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTY 527 (561)
Q Consensus 454 ~~~~~lL~~L~~-h~~A~pF~~PVd~~-----evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~Y 527 (561)
.++..++..+++ -+-++||..||..+ .+|+||++|++||||+||++||+++. |+++++|.+||+|||+||+.|
T Consensus 3 ~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~-Y~s~~ef~~Dv~LI~~N~~~y 81 (109)
T cd05492 3 CLLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEK-YTSLEEFKADALLLLHNTAIF 81 (109)
T ss_pred hhHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 356677788887 57789999999632 59999999999999999999999988 899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhc
Q 008580 528 NSPDTIYYKCATRLESHFQSKVQSGL 553 (561)
Q Consensus 528 N~pdS~~yk~A~~Lek~Fe~~lkeil 553 (561)
|+++|.++.+|..|-+.....+.++-
T Consensus 82 Ng~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 82 HGADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998888763
No 39
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.72 E-value=2.7e-17 Score=147.23 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhccCC------CCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 008580 451 HLTAFMRSLLKSMHDHV------DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANA 524 (561)
Q Consensus 451 ~L~~~~~~lL~~L~~h~------~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Nc 524 (561)
.++..+..|+..+++|. .+.||.+.++ ..|+||.+|+.||||.+|++||+++. |.++++|..||.+||+||
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~-Y~~ld~~~~D~~lmf~NA 79 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGR-YRRLDKFQEDMFEVLERA 79 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCC-cCcHHHHHHHHHHHHHHH
Confidence 45677888888888774 4688999887 45788899999999999999999988 899999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 008580 525 RTYNSPDTIYYKCATRLESHFQSKVQSGL 553 (561)
Q Consensus 525 r~YN~pdS~~yk~A~~Lek~Fe~~lkeil 553 (561)
+.||.++|.+|.+|..|+++|.+...++.
T Consensus 80 r~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 80 RRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998877654
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.70 E-value=1.7e-17 Score=198.10 Aligned_cols=98 Identities=35% Similarity=0.656 Sum_probs=94.5
Q ss_pred HHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHH
Q 008580 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYY 535 (561)
Q Consensus 456 ~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~y 535 (561)
|..||..|..|..||||++||++..+||||+||++||||+||+.|+..+. |.+.++|..||+|||.||..||.+ |.++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~-Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~ 1383 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGI-YPSPEEFATDIELVFDNCETYNED-SEIG 1383 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHhccc-hhhh
Confidence 89999999999999999999999999999999999999999999999987 899999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 008580 536 KCATRLESHFQSKVQSGLHS 555 (561)
Q Consensus 536 k~A~~Lek~Fe~~lkeil~~ 555 (561)
+....|.++|.++|...++.
T Consensus 1384 ~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1384 RAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred hhcchHHHHHHHHHHhhcCC
Confidence 99999999999998887753
No 41
>PRK07757 acetyltransferase; Provisional
Probab=99.43 E-value=3e-12 Score=116.62 Aligned_cols=107 Identities=23% Similarity=0.371 Sum_probs=89.2
Q ss_pred cEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCC
Q 008580 255 KSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGF 334 (561)
Q Consensus 255 ~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGF 334 (561)
..+++..+|++||.+.+.... ..+++|..++|.+++||+|+|+.||.++++++++ .++..++... .+..||+|+||
T Consensus 42 ~~~i~~~~~~lvG~~~l~~~~-~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~-~g~~~i~~~~--~~~~~Y~k~GF 117 (152)
T PRK07757 42 DFYVAEEEGEIVGCCALHILW-EDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARE-LGVKRVFALT--YQPEFFEKLGF 117 (152)
T ss_pred cEEEEEECCEEEEEEEEEecc-CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHh-CCCCeEEEEe--CcHHHHHHCCC
Confidence 346667789999999876543 3567898999999999999999999999999997 7888775543 35789999999
Q ss_pred cc--ccccccceeeeeeecCCCceeEeeeeCCCCCccchhHHHHH
Q 008580 335 TK--EIYLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRR 377 (561)
Q Consensus 335 sk--~i~l~~~~w~G~IKdYegatLM~C~l~p~i~Y~~~~~~i~~ 377 (561)
.. ...+++.+|.+ |.+||+.+-++...||..
T Consensus 118 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 150 (152)
T PRK07757 118 REVDKEALPQKVWAD------------CIKCPKFPNCDEIAMIKE 150 (152)
T ss_pred EEcccccCChhHHhc------------CccCCCCCCcchhhhhhh
Confidence 44 66779999994 999999999999999853
No 42
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.32 E-value=4.4e-12 Score=104.41 Aligned_cols=77 Identities=23% Similarity=0.468 Sum_probs=63.6
Q ss_pred CCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhc
Q 008580 253 SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (561)
Q Consensus 253 ~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKq 332 (561)
++..+++..++++||.+++... .+++.|..++|.+++||||||+.||+++++.++. . .+.++++..++.||+|+
T Consensus 2 ~~~~~~~~~~~~ivG~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~-~---~i~l~~~~~~~~fY~~~ 75 (79)
T PF13508_consen 2 KERFFVAEDDGEIVGFIRLWPN--EDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS-K---KIFLFTNPAAIKFYEKL 75 (79)
T ss_dssp TEEEEEEEETTEEEEEEEEEET--TTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC-S---EEEEEEEHHHHHHHHHT
T ss_pred ccEEEEEEECCEEEEEEEEEEc--CCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC-C---cEEEEEcHHHHHHHHHC
Confidence 3456788889999998888554 5689999999999999999999999999999864 3 34455577899999999
Q ss_pred CCc
Q 008580 333 GFT 335 (561)
Q Consensus 333 GFs 335 (561)
||+
T Consensus 76 GF~ 78 (79)
T PF13508_consen 76 GFE 78 (79)
T ss_dssp TEE
T ss_pred cCC
Confidence 995
No 43
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.25 E-value=1.1e-10 Score=100.77 Aligned_cols=88 Identities=23% Similarity=0.366 Sum_probs=74.1
Q ss_pred CcHHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE
Q 008580 240 MPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT 319 (561)
Q Consensus 240 MpkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt 319 (561)
+..+++.+.+-+..+..+++..+|+|||.+.++ . -.+|..+.|.|++||+|+|+.||+++++.+++ ++..+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~---~--~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~--~~~~l~~ 102 (117)
T PF13673_consen 30 YSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE---P--DGEISHLYVLPEYRGRGIGRALLDAAEKEAKD--GIRRLTV 102 (117)
T ss_dssp SSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE---T--CEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT--TCEEEEE
T ss_pred cCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc---C--CCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc--CCcEEEE
Confidence 557888888877778899999999999999875 2 24588899999999999999999999999964 8888888
Q ss_pred ccCCcchhhhhhcCC
Q 008580 320 YADNNAVGYFIKQGF 334 (561)
Q Consensus 320 ~AD~~AigFYkKqGF 334 (561)
.++..|..||+|+||
T Consensus 103 ~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 103 EANERARRFYRKLGF 117 (117)
T ss_dssp EC-HHHHHHHHHTT-
T ss_pred EeCHHHHHHHHhCCC
Confidence 888889999999999
No 44
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.23 E-value=7.2e-11 Score=105.78 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=68.7
Q ss_pred HHhhhhcCCCcEEEEEECCeEEEEEEEeeec----CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEE--
Q 008580 245 IVRLVMDRSHKSVMVIRGNVVVGGITYRPYV----SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFL-- 318 (561)
Q Consensus 245 I~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~----~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~l-- 318 (561)
+.+.+-++...-+++..+|++||.+.+...+ ...+++|..++|.+++||+|||+.||++++++|++ .++..+.
T Consensus 38 ~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~-~~~~~i~l~ 116 (144)
T PRK10146 38 FNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQ-AGAEMTELS 116 (144)
T ss_pred HHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHH-cCCcEEEEe
Confidence 3344444555556677789999999876532 12246888899999999999999999999999998 7776543
Q ss_pred Ecc-CCcchhhhhhcCCcc
Q 008580 319 TYA-DNNAVGYFIKQGFTK 336 (561)
Q Consensus 319 t~A-D~~AigFYkKqGFsk 336 (561)
+.. +..|+.||+|+||..
T Consensus 117 ~~~~n~~a~~fY~~~Gf~~ 135 (144)
T PRK10146 117 TNVKRHDAHRFYLREGYEQ 135 (144)
T ss_pred cCCCchHHHHHHHHcCCch
Confidence 333 346999999999965
No 45
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.22 E-value=5.9e-11 Score=96.68 Aligned_cols=75 Identities=24% Similarity=0.377 Sum_probs=64.3
Q ss_pred EECCeEEEEEEEeeecCC----ceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccCCc-chhhhhhc
Q 008580 260 IRGNVVVGGITYRPYVSQ----KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNN-AVGYFIKQ 332 (561)
Q Consensus 260 ~~~g~VIGGI~~R~f~~~----~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD~~-AigFYkKq 332 (561)
..+|+|||.+.+++.... ..++|..++|.++||++|+|+.||+++++.+++ .++..+.+ ..+|. +..||+|+
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARK-RGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHH-TTESEEEEEEETTGHHHHHHHHHT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHh-cCccEEEEEEeCCCHHHHHHHHHc
Confidence 468999999999987654 789999999999999999999999999999998 78777644 33344 78999999
Q ss_pred CCc
Q 008580 333 GFT 335 (561)
Q Consensus 333 GFs 335 (561)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 994
No 46
>PTZ00330 acetyltransferase; Provisional
Probab=99.19 E-value=4e-10 Score=101.32 Aligned_cols=123 Identities=16% Similarity=0.254 Sum_probs=84.1
Q ss_pred ceEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHhhhhc----C-CCcEEEEEECCeEEEEEEEeeec-----CC
Q 008580 208 NLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMD----R-SHKSVMVIRGNVVVGGITYRPYV-----SQ 277 (561)
Q Consensus 208 ~i~f~vv~nd~~~~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D----~-~h~slvl~~~g~VIGGI~~R~f~-----~~ 277 (561)
.|.++.++-++.++...++.. +.. -|.+..+.+.+..-. . .+..++...+|++||.+.+...+ ..
T Consensus 6 ~~~ir~~~~~D~~~i~~l~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 80 (147)
T PTZ00330 6 SLELRDLEEGDLGSVLELLSH---LTS--APALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGK 80 (147)
T ss_pred eEEEEEcccccHHHHHHHHHH---hcC--CCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCC
Confidence 477777776666655544332 222 233455555443221 1 12233334568999998754321 11
Q ss_pred ceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCcc
Q 008580 278 KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 278 ~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk 336 (561)
.+++|.-+.|.+++||+|||+.||+++.+++++ .++..++...+..|+.||+|+||+.
T Consensus 81 ~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~-~~~~~l~l~~n~~a~~~y~k~GF~~ 138 (147)
T PTZ00330 81 CVGHIEDVVVDPSYRGQGLGRALISDLCEIARS-SGCYKVILDCTEDMVAFYKKLGFRA 138 (147)
T ss_pred ceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEecChHHHHHHHHCCCEE
Confidence 246888899999999999999999999999998 7887777777778999999999964
No 47
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.17 E-value=7.7e-11 Score=111.15 Aligned_cols=101 Identities=25% Similarity=0.480 Sum_probs=82.2
Q ss_pred HHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccC
Q 008580 243 EYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYAD 322 (561)
Q Consensus 243 eYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD 322 (561)
+.|...+-| =.++.++|+|||.+...++...+.+||..+||+|++|++|+|.+||++++..|++ .|+..++..+.
T Consensus 33 ~~le~~i~d----F~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~-~gi~~lf~LTt 107 (153)
T COG1246 33 EQLEEEIDD----FTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARE-LGIKELFVLTT 107 (153)
T ss_pred HHHHHHHhh----heeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHH-cCCceeeeeec
Confidence 445555432 2455668999997766666778999999999999999999999999999999998 89998766543
Q ss_pred CcchhhhhhcCCcc--ccccccceeeeee
Q 008580 323 NNAVGYFIKQGFTK--EIYLEKDRWQGYI 349 (561)
Q Consensus 323 ~~AigFYkKqGFsk--~i~l~~~~w~G~I 349 (561)
++.+||.++||+. ...||..+|..|.
T Consensus 108 -~~~~~F~~~GF~~vd~~~LP~~~~~~~~ 135 (153)
T COG1246 108 -RSPEFFAERGFTRVDKDELPEEVWSSYN 135 (153)
T ss_pred -ccHHHHHHcCCeECccccCCHHHHHHHH
Confidence 8999999999944 3459999999654
No 48
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.16 E-value=1.8e-11 Score=110.45 Aligned_cols=76 Identities=28% Similarity=0.385 Sum_probs=59.8
Q ss_pred HHHHHHHHHhccCCCCCCCcCCCCC--CCCCchhhhcCCCCCHHHHHHHHhcC------CCCCCHHHHHHHHHHHHHHHh
Q 008580 454 AFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESE------QYYVTFEMFVADVKRMFANAR 525 (561)
Q Consensus 454 ~~~~~lL~~L~~h~~A~pF~~PVd~--~evPDYydIIk~PMDL~TIkkKL~~g------~YY~S~~eF~aDvrLIF~Ncr 525 (561)
..|..+|..+..++.+|||..||++ ..+||||++||+||||+||+++|... .+|..-..+..++..+..||.
T Consensus 6 ~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (114)
T cd05494 6 ERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRS 85 (114)
T ss_pred HHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccC
Confidence 3456666777778899999999999 78999999999999999999999984 234545556666666666666
Q ss_pred hhCC
Q 008580 526 TYNS 529 (561)
Q Consensus 526 ~YN~ 529 (561)
.+|.
T Consensus 86 ~~~~ 89 (114)
T cd05494 86 PSNI 89 (114)
T ss_pred cccc
Confidence 6655
No 49
>PRK03624 putative acetyltransferase; Provisional
Probab=99.14 E-value=6.7e-10 Score=97.49 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=82.3
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHhhhCCCC--cHHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEE
Q 008580 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNM--PKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCA 286 (561)
Q Consensus 209 i~f~vv~nd~~~~~~~~L~~lkniF~~qLP~M--pkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~A 286 (561)
|.|+.++.++.++...+.... ...+.. +...+...+.......+++..+|++||.+++... .....|..++
T Consensus 3 ~~ir~~~~~d~~~i~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~--~~~~~i~~i~ 75 (140)
T PRK03624 3 MEIRVFRQADFEAVIALWERC-----DLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYD--GHRGWAYYLA 75 (140)
T ss_pred eEEEEcccccHHHHHHHHHhc-----CCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeecc--CCCceEEEEE
Confidence 677777777666555444333 111111 2233444444445566777778999998876533 3335677789
Q ss_pred eccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccCC-cchhhhhhcCCccc
Q 008580 287 ITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADN-NAVGYFIKQGFTKE 337 (561)
Q Consensus 287 V~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD~-~AigFYkKqGFsk~ 337 (561)
|.++|||+|||+.||.++.+++++ .++..+.+ ..+| .+..||+|+||...
T Consensus 76 v~p~~rg~Gig~~ll~~~~~~~~~-~~~~~~~~~~~~~N~~~~~~y~k~GF~~~ 128 (140)
T PRK03624 76 VHPDFRGRGIGRALVARLEKKLIA-RGCPKINLQVREDNDAVLGFYEALGYEEQ 128 (140)
T ss_pred ECHHHhCCCHHHHHHHHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHcCCccc
Confidence 999999999999999999999997 67775433 3444 48999999999763
No 50
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.13 E-value=8.1e-10 Score=111.73 Aligned_cols=131 Identities=14% Similarity=0.179 Sum_probs=94.6
Q ss_pred ceEEEEEeCCChhhHHHHHHHHHHHHhh-hCCCCcHHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEE
Q 008580 208 NLKFVCLSNDGIDEHMVWLIGLKNIFAR-QLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCA 286 (561)
Q Consensus 208 ~i~f~vv~nd~~~~~~~~L~~lkniF~~-qLP~MpkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~A 286 (561)
.+.++.++-++.++...+. +.+|.. ..|....+|+.+.+ +.....+++..+|++||.+++.+......+||..|+
T Consensus 115 ~~~IR~a~~~D~~~l~~L~---~~v~~~~~~~~~~~~~l~~~~-~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~ 190 (266)
T TIGR03827 115 GFTLRIATEDDADAMAALY---RKVFPTYPFPIHDPAYLLETM-KSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDFA 190 (266)
T ss_pred ceEEEECCHHHHHHHHHHH---HHHhccCCCCccCHHHHHHHh-cCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEE
Confidence 3667766555444444333 345643 23444568888765 345555677778999999887655555679999999
Q ss_pred eccCCcccChHHHHHHHHHHHHHhhcCceEEEEccC---CcchhhhhhcCCccccccccc
Q 008580 287 ITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYAD---NNAVGYFIKQGFTKEIYLEKD 343 (561)
Q Consensus 287 V~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD---~~AigFYkKqGFsk~i~l~~~ 343 (561)
|.|+|||+|||+.||.++++.+++ .++..+++.+. ..|..+|+|+||....++...
T Consensus 191 V~P~yRG~GiG~~Ll~~l~~~a~~-~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~ 249 (266)
T TIGR03827 191 TLPEYRGKGLAKILLAAMEKEMKE-KGIRTAYTIARASSYGMNITFARLGYAYGGTLVNN 249 (266)
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHH-CCCcEEEeehhhcchhHHHHHHHcCCccccEEeec
Confidence 999999999999999999999997 88887766443 336789999999875555533
No 51
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.12 E-value=6.8e-10 Score=100.97 Aligned_cols=136 Identities=14% Similarity=0.162 Sum_probs=87.1
Q ss_pred CceEEEEEeCCChhhHHHHHHHHHHHHhh--hCCCCcHHHHHhhhhc-CCCcEEEEEECCeEEEEEEEeeecC---CceE
Q 008580 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFAR--QLPNMPKEYIVRLVMD-RSHKSVMVIRGNVVVGGITYRPYVS---QKFG 280 (561)
Q Consensus 207 g~i~f~vv~nd~~~~~~~~L~~lkniF~~--qLP~MpkeYI~Rlv~D-~~h~slvl~~~g~VIGGI~~R~f~~---~~f~ 280 (561)
+.|.++-++-++......|+... .+|.. ..|....+.+.+.+-+ .....+++..+|++||.+++..... ...+
T Consensus 2 ~~i~lr~~~~~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~ 80 (162)
T PRK10140 2 SEIVIRHAETRDYEAIRQIHAQP-EVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVA 80 (162)
T ss_pred CccEEEecchhhHHHHHHHHhCc-ccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEE
Confidence 45778877666655555555432 22222 2333344444444333 3445667777899999998765421 2234
Q ss_pred EEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE--EEccCC-cchhhhhhcCCccccccccce
Q 008580 281 EIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF--LTYADN-NAVGYFIKQGFTKEIYLEKDR 344 (561)
Q Consensus 281 EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~--lt~AD~-~AigFYkKqGFsk~i~l~~~~ 344 (561)
|+- ++|.+++||||||+.||+++.+++++..++..+ .+..+| .|+.||+|+||+..-.++...
T Consensus 81 ~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~ 146 (162)
T PRK10140 81 DFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYA 146 (162)
T ss_pred EEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccce
Confidence 443 789999999999999999999999863355443 344544 579999999998755555443
No 52
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.12 E-value=9.8e-10 Score=95.61 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=69.5
Q ss_pred cHHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE-
Q 008580 241 PKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT- 319 (561)
Q Consensus 241 pkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt- 319 (561)
..+.+...+.+....-+++..+|++||.+.++.. ....+|..++|.+++||+|+|+.||+++++++++ .++..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~-~~~~~i~~~ 94 (131)
T TIGR01575 18 TEAQFAEELANYHLCYLLARIGGKVVGYAGVQIV--LDEAHILNIAVKPEYQGQGIGRALLRELIDEAKG-RGVNEIFLE 94 (131)
T ss_pred CHHHHHHHhcCCCceEEEEecCCeEEEEEEEEec--CCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCeEEEE
Confidence 3455555444333334445557999999987654 3346788899999999999999999999999997 66666554
Q ss_pred --ccCCcchhhhhhcCCccc
Q 008580 320 --YADNNAVGYFIKQGFTKE 337 (561)
Q Consensus 320 --~AD~~AigFYkKqGFsk~ 337 (561)
..+..++.||+|+||+..
T Consensus 95 ~~~~n~~~~~~y~~~Gf~~~ 114 (131)
T TIGR01575 95 VRVSNIAAQALYKKLGFNEI 114 (131)
T ss_pred EecccHHHHHHHHHcCCCcc
Confidence 334558999999999753
No 53
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.11 E-value=3.6e-10 Score=127.23 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=81.4
Q ss_pred cEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCC
Q 008580 255 KSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGF 334 (561)
Q Consensus 255 ~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGF 334 (561)
..+++..+|+|||++++..+ +.+.++|..++|.|+|||||||+.||+++++.+++ .++..+.+.. .+..||+|+||
T Consensus 504 ~~~Va~~~g~IVG~~~l~~~-~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~-~g~~~i~l~~--~a~~FYek~GF 579 (614)
T PRK12308 504 SFAVAEHHGEVTGCASLYIY-DSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQ-MAIKKVFVLT--RVPEFFMKQGF 579 (614)
T ss_pred cEEEEEECCEEEEEEEEEEc-CCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEee--CcHHHHHHCCC
Confidence 44667778999999887654 33568999999999999999999999999999998 7888776543 46899999999
Q ss_pred ccccccccceeeeeeecCCCceeEeeeeCCCCC
Q 008580 335 TKEIYLEKDRWQGYIKDYDGGILMECKIDPKLP 367 (561)
Q Consensus 335 sk~i~l~~~~w~G~IKdYegatLM~C~l~p~i~ 367 (561)
.. .| ..+++..++|.|.+||+--
T Consensus 580 ~~---------~~-~~~~~~~~~~~~~~~~~~~ 602 (614)
T PRK12308 580 SP---------TS-KSLLPEKVLKDCDQCPRQH 602 (614)
T ss_pred EE---------CC-cccCChHHHHhhccCCCcc
Confidence 65 34 3367899999999999853
No 54
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.08 E-value=5.4e-10 Score=120.58 Aligned_cols=101 Identities=25% Similarity=0.483 Sum_probs=79.8
Q ss_pred HHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEcc
Q 008580 242 KEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYA 321 (561)
Q Consensus 242 keYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~A 321 (561)
.+++.+.+ ...+++..+|++||++.+.++.....+||..++|.++|||+|+|++||+++++++++ .++..+++.+
T Consensus 314 ~~~l~~~~----~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~-~G~~~l~v~~ 388 (429)
T TIGR01890 314 REYLEREI----SEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQ-MGISRLFVLT 388 (429)
T ss_pred HHHHHhhc----CcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEee
Confidence 45554432 234556678999999988887666779999999999999999999999999999998 7887765544
Q ss_pred CCcchhhhhhcCCccc--cccccceeeee
Q 008580 322 DNNAVGYFIKQGFTKE--IYLEKDRWQGY 348 (561)
Q Consensus 322 D~~AigFYkKqGFsk~--i~l~~~~w~G~ 348 (561)
. .+..||+|+||... ..+|..+|..|
T Consensus 389 ~-~a~~fY~k~GF~~~g~~~l~~~~~~~~ 416 (429)
T TIGR01890 389 T-RTGHWFRERGFQTASVDELPEARRKLY 416 (429)
T ss_pred c-chHHHHHHCCCEECChhhCCHHHHHHh
Confidence 3 47899999999654 56788777755
No 55
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.07 E-value=1.2e-09 Score=103.46 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=65.4
Q ss_pred CcEEEEE-ECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhc
Q 008580 254 HKSVMVI-RGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (561)
Q Consensus 254 h~slvl~-~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKq 332 (561)
...+++. .+|++||.+++.... ..+++|..++|.+++||+|+|+.||+++++++++ .++..+.+.. .++.||+|+
T Consensus 45 ~~~~va~~~~~~iiG~~~~~~~~-~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~-~g~~~l~~~~--~~~~fY~k~ 120 (169)
T PRK07922 45 QEFWVAEHLDGEVVGCGALHVMW-EDLAEIRTVAVDPAARGRGVGHAIVERLLDVARE-LGLSRVFVLT--FEVEFFARH 120 (169)
T ss_pred CcEEEEEecCCcEEEEEEEeecC-CCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHH-cCCCEEEEEe--ccHHHHHHC
Confidence 3456776 778999988776543 4578999999999999999999999999999998 8888876543 358999999
Q ss_pred CCcc
Q 008580 333 GFTK 336 (561)
Q Consensus 333 GFsk 336 (561)
||..
T Consensus 121 GF~~ 124 (169)
T PRK07922 121 GFVE 124 (169)
T ss_pred CCEE
Confidence 9954
No 56
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.06 E-value=1.8e-09 Score=95.18 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=64.2
Q ss_pred CCcEEEEEECCeEEEEEEEeee----cC--CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcch
Q 008580 253 SHKSVMVIRGNVVVGGITYRPY----VS--QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAV 326 (561)
Q Consensus 253 ~h~slvl~~~g~VIGGI~~R~f----~~--~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~Ai 326 (561)
.+..+++.++|+|||.+++.++ .. -..+.|.-+||.+++||+|+|++||.++.+++++ .++..++.++ ...
T Consensus 40 ~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~-~g~~~~~l~~--~~~ 116 (127)
T PF13527_consen 40 PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARE-RGVPFIFLFP--SSP 116 (127)
T ss_dssp TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHH-TT-SEEEEE---SSH
T ss_pred cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHh-CCCCEEEEec--CCh
Confidence 3467888889999999976443 11 1357888899999999999999999999999998 7888888887 458
Q ss_pred hhhhhcCCc
Q 008580 327 GYFIKQGFT 335 (561)
Q Consensus 327 gFYkKqGFs 335 (561)
.||+|.||.
T Consensus 117 ~~Y~~~G~~ 125 (127)
T PF13527_consen 117 PFYRRFGFE 125 (127)
T ss_dssp HHHHHTTEE
T ss_pred hhhhcCCCE
Confidence 999999995
No 57
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.05 E-value=1.3e-09 Score=100.77 Aligned_cols=95 Identities=22% Similarity=0.321 Sum_probs=71.3
Q ss_pred cHHHHHhhhhcCCCcEEEEEE---CC----eEEEEEEEeeecCC----ceEEEEEEEeccCCcccChHHHHHHHHHHHHH
Q 008580 241 PKEYIVRLVMDRSHKSVMVIR---GN----VVVGGITYRPYVSQ----KFGEIAFCAITADEQVKGYGTRLMNHLKQHAR 309 (561)
Q Consensus 241 pkeYI~Rlv~D~~h~slvl~~---~g----~VIGGI~~R~f~~~----~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak 309 (561)
+..++...+-+.....++... ++ +++|.+..+..... ..++|..+||+|+|||+|||++||+++.+.++
T Consensus 42 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~ 121 (177)
T COG0456 42 SREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLR 121 (177)
T ss_pred hHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHH
Confidence 557777766666666666655 33 59999988754332 26899999999999999999999999999998
Q ss_pred hhcCc-e--EEEEccCC-cchhhhhhcCCcc
Q 008580 310 DVDGL-T--HFLTYADN-NAVGYFIKQGFTK 336 (561)
Q Consensus 310 ~~~gi-~--~~lt~AD~-~AigFYkKqGFsk 336 (561)
+ .+. . .+.+..+| .|++||+|.||..
T Consensus 122 ~-~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~ 151 (177)
T COG0456 122 E-RGLADKIVLEVRESNEAAIGLYRKLGFEV 151 (177)
T ss_pred h-cCCCceEEEEEecCChHHHHHHHHcCCEE
Confidence 7 553 2 33444444 4899999999965
No 58
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.03 E-value=3.4e-10 Score=132.17 Aligned_cols=102 Identities=33% Similarity=0.577 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 008580 451 HLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSP 530 (561)
Q Consensus 451 ~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~p 530 (561)
.+..+++.++..++..+....|..||++.++|||+++|++||||.||+.+++++. |.++++|.+|+.+|..||+.||.-
T Consensus 565 p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~-y~tle~ieed~~l~~~nc~~yn~~ 643 (1051)
T KOG0955|consen 565 PFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGA-YSTLEPIEEDVNLIVSNCMEYNAK 643 (1051)
T ss_pred hHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccc-hhhhhHHHHhHhHhHhHHHHhhcc
Confidence 3456677888888888999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhc
Q 008580 531 DTIYYKCATRLESHFQSKVQSGL 553 (561)
Q Consensus 531 dS~~yk~A~~Lek~Fe~~lkeil 553 (561)
++.+|+.|..|++.....+...-
T Consensus 644 dtv~~r~av~~~e~~~~~~~~ar 666 (1051)
T KOG0955|consen 644 DTVYYRAAVRLRELIKKDFRNAR 666 (1051)
T ss_pred CeehHhhhHHHHhhhhhHHHhcc
Confidence 99999999999998887766543
No 59
>PRK10314 putative acyltransferase; Provisional
Probab=98.99 E-value=1.3e-09 Score=101.93 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=66.8
Q ss_pred CcEEEEEECCeEEEEEEEeeecC-CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhc
Q 008580 254 HKSVMVIRGNVVVGGITYRPYVS-QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (561)
Q Consensus 254 h~slvl~~~g~VIGGI~~R~f~~-~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKq 332 (561)
...+++..+|++||.+.++.... ...++|--++|.+++||+|+|+.||+++.+++++..+...+.+.+...|.+||+|.
T Consensus 48 ~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~ 127 (153)
T PRK10314 48 NRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSF 127 (153)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHHC
Confidence 44566677899999766654322 23578999999999999999999999999999874466677778888899999999
Q ss_pred CCcc
Q 008580 333 GFTK 336 (561)
Q Consensus 333 GFsk 336 (561)
||..
T Consensus 128 GF~~ 131 (153)
T PRK10314 128 GFIP 131 (153)
T ss_pred CCEE
Confidence 9964
No 60
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.98 E-value=4e-10 Score=102.23 Aligned_cols=42 Identities=33% Similarity=0.540 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 008580 490 DPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDT 532 (561)
Q Consensus 490 ~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS 532 (561)
.||||+||++||.++ ||.++++|++|++|||.||+.||+++.
T Consensus 63 y~MDL~tIe~RL~ng-~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNG-YYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 589999999999986 599999999999999999999998754
No 61
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.98 E-value=3.2e-10 Score=132.57 Aligned_cols=97 Identities=31% Similarity=0.634 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 008580 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTI 533 (561)
Q Consensus 454 ~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~ 533 (561)
.++..++.++++-+.+|||++||+++.+|+||.+|++||||.+|.+++.... |.+..+|.+|+++|+.||..||+.++.
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~-y~s~~e~l~dv~~i~~n~~~~ng~e~~ 1463 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHK-YDSRSEFLDDVNLIYVNSVEYNGAESA 1463 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccc-cccHHHHhhhhHhhcccceeecCcccc
Confidence 5566777788888999999999999999999999999999999999999888 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008580 534 YYKCATRLESHFQSKVQS 551 (561)
Q Consensus 534 ~yk~A~~Lek~Fe~~lke 551 (561)
|..-|+++-.+....+.+
T Consensus 1464 y~~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1464 YTKKARKIGEVGLANLLE 1481 (1563)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 998888877666555544
No 62
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.98 E-value=4.1e-09 Score=95.84 Aligned_cols=81 Identities=16% Similarity=0.310 Sum_probs=60.1
Q ss_pred cEEEEEE--CCeEEEEEEEeee---c--CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchh
Q 008580 255 KSVMVIR--GNVVVGGITYRPY---V--SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVG 327 (561)
Q Consensus 255 ~slvl~~--~g~VIGGI~~R~f---~--~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~Aig 327 (561)
..+++.. +|+|||.+.+... . ...++.|..++|.++|||||||+.||++++++|++ .|+..++.........
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~-~g~~~i~l~~~~~N~~ 132 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARS-AGCYKVILDCSEENKA 132 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeccccHH
Confidence 3444444 5899998765321 1 12456677799999999999999999999999997 7888765544333357
Q ss_pred hhhhcCCcc
Q 008580 328 YFIKQGFTK 336 (561)
Q Consensus 328 FYkKqGFsk 336 (561)
||+|+||..
T Consensus 133 ~y~k~GF~~ 141 (150)
T PLN02706 133 FYEKCGYVR 141 (150)
T ss_pred HHHHCcCEE
Confidence 999999964
No 63
>PLN02825 amino-acid N-acetyltransferase
Probab=98.98 E-value=2.2e-09 Score=118.65 Aligned_cols=104 Identities=22% Similarity=0.431 Sum_probs=80.8
Q ss_pred CCCCcHHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceE
Q 008580 237 LPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTH 316 (561)
Q Consensus 237 LP~MpkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~ 316 (561)
+.....+.+.+.+ ..-+++..+|+|||++.+.+|.....+||..+||.++|||+|+|++||+++++.|++ .|+..
T Consensus 394 lv~rs~e~le~ei----~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~-~G~~~ 468 (515)
T PLN02825 394 LVRRTDEELLRAL----DSFVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAAS-LGLEK 468 (515)
T ss_pred CcCCCHHHHHhcC----CcEEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCE
Confidence 3444556665543 235667788999998887788777789999999999999999999999999999998 78887
Q ss_pred EEEccCCcchhhhhhcCCcc--ccccccceee
Q 008580 317 FLTYADNNAVGYFIKQGFTK--EIYLEKDRWQ 346 (561)
Q Consensus 317 ~lt~AD~~AigFYkKqGFsk--~i~l~~~~w~ 346 (561)
++... ..|..||+|+||.. ...||..+..
T Consensus 469 L~Llt-t~a~~fY~k~GF~~~~~~~lp~~~~~ 499 (515)
T PLN02825 469 LFLLT-TRTADWFVRRGFSECSIESLPEARRK 499 (515)
T ss_pred EEEEe-CcHHHHHHHCCCEEeChhhCCHHHHh
Confidence 75544 56899999999943 4456665433
No 64
>PRK13688 hypothetical protein; Provisional
Probab=98.97 E-value=3.8e-09 Score=99.92 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=72.8
Q ss_pred HHHHHHHHhhhCCCCcH-HHHHhhhhcC--CCcEEEEEECCeEEEEEEEeee---------cCCceEEEEEEEeccCCcc
Q 008580 226 LIGLKNIFARQLPNMPK-EYIVRLVMDR--SHKSVMVIRGNVVVGGITYRPY---------VSQKFGEIAFCAITADEQV 293 (561)
Q Consensus 226 L~~lkniF~~qLP~Mpk-eYI~Rlv~D~--~h~slvl~~~g~VIGGI~~R~f---------~~~~f~EI~f~AV~~~~Qg 293 (561)
|-++|.+...+.=.++. .-|...+|.. ....+++..++++||++.+... .....++|..++|.+++||
T Consensus 14 ~~~~~~~~~~~~~dl~~l~~l~~~~f~~~~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rg 93 (156)
T PRK13688 14 LEEFKKFREFGNQELSMLEELQANIIENDSESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQN 93 (156)
T ss_pred HHHHHHHHHhcHHHHHHHHhhhhhEeecCCCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcC
Confidence 55566555554444444 4455555553 4555777788999998754321 1246689999999999999
Q ss_pred cChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCcc
Q 008580 294 KGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 294 KGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk 336 (561)
||||++||+++++. ++. +.+.+.+.|..||+|+||..
T Consensus 94 kGiG~~Ll~~a~~~-----~~~-~~~~~~~~a~~FY~k~GF~~ 130 (156)
T PRK13688 94 RGYGEMLVDFAKSF-----QLP-IKTIARNKSKDFWLKLGFTP 130 (156)
T ss_pred CCHHHHHHHHHHHh-----CCe-EEEEeccchHHHHHhCCCEE
Confidence 99999999865443 333 34456778999999999965
No 65
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.95 E-value=4.1e-09 Score=95.58 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=73.0
Q ss_pred CcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--cc-CCcchhhhh
Q 008580 254 HKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YA-DNNAVGYFI 330 (561)
Q Consensus 254 h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~A-D~~AigFYk 330 (561)
...+++..+|++||.+++..+. +.+++..++|.+++||+|||+.||.++.+.+++ .++..+.. .. +..|+.||+
T Consensus 40 ~~~~~~~~~~~~vG~~~~~~~~--~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~-~~~~~~~~~~~~~N~~a~~~y~ 116 (146)
T PRK09491 40 YLNLKLTVNGQMAAFAITQVVL--DEATLFNIAVDPDYQRQGLGRALLEHLIDELEK-RGVATLWLEVRASNAAAIALYE 116 (146)
T ss_pred ceEEEEEECCeEEEEEEEEeec--CceEEEEEEECHHHccCCHHHHHHHHHHHHHHH-CCCcEEEEEEccCCHHHHHHHH
Confidence 3345566789999999887653 346777899999999999999999999999987 77766544 23 345899999
Q ss_pred hcCCccccccccceeeeeeecCCCceeEee
Q 008580 331 KQGFTKEIYLEKDRWQGYIKDYDGGILMEC 360 (561)
Q Consensus 331 KqGFsk~i~l~~~~w~G~IKdYegatLM~C 360 (561)
|.||.....+.+..|.+ - .|.+..+|+-
T Consensus 117 k~Gf~~~~~~~~~~~~~-~-~~~d~~~~~~ 144 (146)
T PRK09491 117 SLGFNEVTIRRNYYPTA-D-GREDAIIMAL 144 (146)
T ss_pred HcCCEEeeeeeccccCC-C-CceeEEEEec
Confidence 99997644443222111 1 2666777763
No 66
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.95 E-value=2.4e-09 Score=102.62 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=64.1
Q ss_pred cEEEE-EECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccCCc-chhhhh
Q 008580 255 KSVMV-IRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNN-AVGYFI 330 (561)
Q Consensus 255 ~slvl-~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD~~-AigFYk 330 (561)
..+++ ..+|++||.|++..+.. ..++|.+++|.+++||||||+.||.++++++++ .|+..+.+ ..+|. |..||+
T Consensus 99 ~~~i~~~~~g~iiG~i~l~~~~~-~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~-~g~~~I~l~v~~~N~~A~~~Y~ 176 (191)
T TIGR02382 99 QCLILRDASGDPRGYVTLRELND-TDARIGLLAVFPGAQSRGIGAELMQTALNWCYA-RGLTRLRVATQMGNTAALRLYI 176 (191)
T ss_pred eEEEEEccCCeEEEEEEEEecCC-CceEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCHHHHHHHH
Confidence 34444 34689999998876543 347899999999999999999999999999997 78776554 45554 899999
Q ss_pred hcCCcc
Q 008580 331 KQGFTK 336 (561)
Q Consensus 331 KqGFsk 336 (561)
|+||..
T Consensus 177 klGF~~ 182 (191)
T TIGR02382 177 RSGANI 182 (191)
T ss_pred HcCCcc
Confidence 999964
No 67
>PHA00673 acetyltransferase domain containing protein
Probab=98.94 E-value=9.4e-09 Score=97.53 Aligned_cols=93 Identities=19% Similarity=0.190 Sum_probs=77.5
Q ss_pred HHHHhhhhcCCCcEEEEEECCeEEEEEEEeeec-----CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE
Q 008580 243 EYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYV-----SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (561)
Q Consensus 243 eYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~-----~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~ 317 (561)
..+.++.-|++..-++...+|+|||.+.+..-+ ....+.|.++.|++++||+|+|+.||++.++++|+ .|+..+
T Consensus 44 ~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~-~Gc~~l 122 (154)
T PHA00673 44 HAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARD-LGATGL 122 (154)
T ss_pred HHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHH-CCCCEE
Confidence 446788889999999998899999987644422 34667999999999999999999999999999998 788876
Q ss_pred EE--ccCCcchhhhhhcCCcc
Q 008580 318 LT--YADNNAVGYFIKQGFTK 336 (561)
Q Consensus 318 lt--~AD~~AigFYkKqGFsk 336 (561)
.. ....+.+.||.+||+..
T Consensus 123 yis~~p~~~tv~fy~~~g~~~ 143 (154)
T PHA00673 123 YVSGPTEGRLVQLLPAAGYRE 143 (154)
T ss_pred EEecCCCccchHHHHhCCchh
Confidence 55 44567899999999954
No 68
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.92 E-value=1.7e-08 Score=91.67 Aligned_cols=99 Identities=20% Similarity=0.425 Sum_probs=72.7
Q ss_pred HHHHhhhhcCCCcEEEEEE-CCeEEEEEEEeee-cCCceEEEEEEEeccCCcccChHHHHHHHHHHHH-HhhcCceEEE-
Q 008580 243 EYIVRLVMDRSHKSVMVIR-GNVVVGGITYRPY-VSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHA-RDVDGLTHFL- 318 (561)
Q Consensus 243 eYI~Rlv~D~~h~slvl~~-~g~VIGGI~~R~f-~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~a-k~~~gi~~~l- 318 (561)
.+|..++.+.+...+++.. +|++||.+.++.+ +....+++. +.|.+++|++|+|+.|++++.++| ++ .++..+.
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~-~~~~~i~~ 116 (155)
T PF13420_consen 39 RWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKE-LGIHKIYL 116 (155)
T ss_dssp HHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HH-TT-CEEEE
T ss_pred HHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhc-cCeEEEEE
Confidence 4455554455677777777 8999999988764 445667776 455599999999999999999999 76 8888764
Q ss_pred -EccCCc-chhhhhhcCCccccccccc
Q 008580 319 -TYADNN-AVGYFIKQGFTKEIYLEKD 343 (561)
Q Consensus 319 -t~AD~~-AigFYkKqGFsk~i~l~~~ 343 (561)
+.+.|. |+.||+|.||+....++..
T Consensus 117 ~v~~~N~~~i~~~~~~GF~~~g~~~~~ 143 (155)
T PF13420_consen 117 EVFSSNEKAINFYKKLGFEEEGELKDH 143 (155)
T ss_dssp EEETT-HHHHHHHHHTTEEEEEEEEEE
T ss_pred EEecCCHHHHHHHHhCCCEEEEEEecE
Confidence 345444 8999999999774444433
No 69
>PRK10514 putative acetyltransferase; Provisional
Probab=98.90 E-value=2e-08 Score=90.49 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=55.0
Q ss_pred EEEEE-ECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCC
Q 008580 256 SVMVI-RGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGF 334 (561)
Q Consensus 256 slvl~-~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGF 334 (561)
.++++ .+|++||.+++.. .+|.-++|.+++||||||+.||+++.+.+++ +...+...+..|+.||+|+||
T Consensus 51 ~~~~~~~~~~~iG~~~~~~------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~---i~~~v~~~N~~a~~~yek~Gf 121 (145)
T PRK10514 51 LWVAVDERDQPVGFMLLSG------GHMEALFVDPDVRGCGVGRMLVEHALSLHPE---LTTDVNEQNEQAVGFYKKMGF 121 (145)
T ss_pred eEEEEecCCcEEEEEEEec------CcEeEEEECHHhccCCHHHHHHHHHHHhccc---cEEEeecCCHHHHHHHHHCCC
Confidence 44544 4789999888643 2455689999999999999999999987643 333333334469999999999
Q ss_pred ccccc
Q 008580 335 TKEIY 339 (561)
Q Consensus 335 sk~i~ 339 (561)
.....
T Consensus 122 ~~~~~ 126 (145)
T PRK10514 122 KVTGR 126 (145)
T ss_pred EEecc
Confidence 76333
No 70
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.89 E-value=7.2e-09 Score=112.15 Aligned_cols=91 Identities=26% Similarity=0.480 Sum_probs=73.4
Q ss_pred cEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCC
Q 008580 255 KSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGF 334 (561)
Q Consensus 255 ~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGF 334 (561)
..+++..+|++||.+++..+.....++|..++|.++|||+|+|++||.++++++++ .++..+.+.. ..|+.||+|+||
T Consensus 335 ~~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~-~g~~~l~l~~-~~a~~fY~k~GF 412 (441)
T PRK05279 335 KFTVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQ-LGLKRLFVLT-TRTAHWFLERGF 412 (441)
T ss_pred cEEEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEec-chHHHHHHHCcC
Confidence 34667778999999887776655678999999999999999999999999999998 7887765443 468999999999
Q ss_pred ccc--cccccceeee
Q 008580 335 TKE--IYLEKDRWQG 347 (561)
Q Consensus 335 sk~--i~l~~~~w~G 347 (561)
+.. ..+|..+|..
T Consensus 413 ~~~g~~~~~~~~~~~ 427 (441)
T PRK05279 413 VPVDVDDLPEAKRQL 427 (441)
T ss_pred EECChhhCcHHHHHh
Confidence 543 3566666553
No 71
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.88 E-value=4.6e-09 Score=109.04 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=60.7
Q ss_pred EECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCcc
Q 008580 260 IRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 260 ~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk 336 (561)
..+|+|||.+ +.+. .+|..+||.++|||+|+|+.||+++++++++ .|+.++..+++..+.+||+|+||+.
T Consensus 12 ~~~~~iVG~~--~l~~----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~-~g~~~i~L~t~~~~~~fYek~GF~~ 81 (297)
T cd02169 12 DDAGELIATG--SIAG----NVLKCVAVCPKYQGEGLALKIVSELINKAYE-EGIFHLFLFTKPKNAKFFRGLGFKE 81 (297)
T ss_pred EECCEEEEEE--Eecc----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEEEcccHHHHHHHCCCEE
Confidence 4569999954 4432 3688999999999999999999999999998 8999998888888999999999964
No 72
>PRK09831 putative acyltransferase; Provisional
Probab=98.84 E-value=9.4e-09 Score=93.98 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=59.2
Q ss_pred CcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcC
Q 008580 254 HKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQG 333 (561)
Q Consensus 254 h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqG 333 (561)
...+++..+|++||.+++.. ..|..++|.+++||+|||+.||.++++.++. .. +.+...|++||+|+|
T Consensus 53 ~~~~v~~~~~~iiG~~~~~~------~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~----l~--v~~~~~a~~~Y~k~G 120 (147)
T PRK09831 53 SQVRVAVINAQPVGFITCIE------HYIDMLFVDPEYTRRGVASALLKPLIKSESE----LT--VDASITAKPFFERYG 120 (147)
T ss_pred CceEEEEECCEEEEEEEehh------ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh----eE--eecchhhHHHHHHCC
Confidence 44667777899999887632 3456688999999999999999999998874 12 244577999999999
Q ss_pred Cccccccc
Q 008580 334 FTKEIYLE 341 (561)
Q Consensus 334 Fsk~i~l~ 341 (561)
|......+
T Consensus 121 f~~~g~~~ 128 (147)
T PRK09831 121 FQTVKQQR 128 (147)
T ss_pred CEEeeccc
Confidence 97655543
No 73
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.83 E-value=1.9e-08 Score=106.01 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=64.8
Q ss_pred CcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcC
Q 008580 254 HKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQG 333 (561)
Q Consensus 254 h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqG 333 (561)
...+++..+|+|||.. ... .+ .|..+||++++||+|+|++||.+|++++++ .|+.++++++...+..||+|+|
T Consensus 31 d~~vv~~~~~~lVg~g--~l~--g~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~-~G~~~l~l~Tk~~~~~fy~klG 103 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCG--GIA--GN--VIKCVAIDESLRGEGLALQLMTELENLAYE-LGRFHLFIFTKPEYAALFEYCG 103 (332)
T ss_pred CEEEEEEECCEEEEEE--EEe--cC--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEEECchHHHHHHHcC
Confidence 4566677789999944 333 22 477899999999999999999999999998 8999999999888889999999
Q ss_pred Ccc
Q 008580 334 FTK 336 (561)
Q Consensus 334 Fsk 336 (561)
|..
T Consensus 104 F~~ 106 (332)
T TIGR00124 104 FKT 106 (332)
T ss_pred CEE
Confidence 965
No 74
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.82 E-value=7.6e-09 Score=115.43 Aligned_cols=100 Identities=29% Similarity=0.483 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHhccC--CCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008580 449 QKHLTAFMRSLLKSMHDH--VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (561)
Q Consensus 449 ~~~L~~~~~~lL~~L~~h--~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~ 526 (561)
...++.+|..+++.+-.. .....|.+.++..+.|+||.+|..||+|..|++|+..+. |.+.+.|..|+.||++||+.
T Consensus 54 ~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~-y~~~~~f~~D~~lm~ena~~ 132 (629)
T KOG1827|consen 54 IPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGR-YKRLSFFQLDFLLMTENARL 132 (629)
T ss_pred HHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHH
Confidence 444555555555544432 456789999999999999999999999999999999998 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHH
Q 008580 527 YNSPDTIYYKCATRLESHFQSKV 549 (561)
Q Consensus 527 YN~pdS~~yk~A~~Lek~Fe~~l 549 (561)
||.+++.+|++|..|+..|....
T Consensus 133 ~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 133 YNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred hcCcchhhhhhhhhhhcchhhhh
Confidence 99999999999999999998755
No 75
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.81 E-value=2.5e-08 Score=95.52 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=63.9
Q ss_pred cEEEEEE-CCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccCC-cchhhhh
Q 008580 255 KSVMVIR-GNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADN-NAVGYFI 330 (561)
Q Consensus 255 ~slvl~~-~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD~-~AigFYk 330 (561)
..+++.+ +|++||.+++..+. ...++|.+++|.+++||+|||+.||+++++++++ .++..+.. ..+| .|+.||+
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~-~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~-~g~~~i~l~v~~~N~~a~~~ye 179 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELN-DTDARIGLLAVFPGAQGRGIGARLMQAALNWCQA-RGLTRLRVATQMGNLAALRLYI 179 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecC-CCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeCCCcHHHHHHHH
Confidence 4455543 57999999877643 3347899999999999999999999999999997 78876643 4455 4799999
Q ss_pred hcCCcc
Q 008580 331 KQGFTK 336 (561)
Q Consensus 331 KqGFsk 336 (561)
|+||..
T Consensus 180 k~Gf~~ 185 (194)
T PRK10975 180 RSGANI 185 (194)
T ss_pred HCCCeE
Confidence 999975
No 76
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.77 E-value=6.5e-08 Score=88.31 Aligned_cols=126 Identities=15% Similarity=0.120 Sum_probs=83.9
Q ss_pred EEEEe-CCChhhHHHHHHHHHHHHhhhCCC-C-cHHHHHhhh-hcCCCcEEEEEECCeEEEEEEEeee-----cCCceEE
Q 008580 211 FVCLS-NDGIDEHMVWLIGLKNIFARQLPN-M-PKEYIVRLV-MDRSHKSVMVIRGNVVVGGITYRPY-----VSQKFGE 281 (561)
Q Consensus 211 f~vv~-nd~~~~~~~~L~~lkniF~~qLP~-M-pkeYI~Rlv-~D~~h~slvl~~~g~VIGGI~~R~f-----~~~~f~E 281 (561)
|+.++ .++.+..+.|+..-.-..-..... . ..+++.+.+ -++.+..+++..+|+++|++++... .......
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 45566 666677777886653332222211 1 124555554 3678888899999999999976320 1355678
Q ss_pred EEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccCCc-chhhhhhcCCcc
Q 008580 282 IAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNN-AVGYFIKQGFTK 336 (561)
Q Consensus 282 I~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD~~-AigFYkKqGFsk 336 (561)
|..++|.+++||+|+|+.+|..+.+++.+..++..+++ ..+|. |+.+|+|.||.+
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~ 138 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRK 138 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EE
T ss_pred EeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEE
Confidence 88899999999999999999999999997336777655 44444 799999999955
No 77
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.77 E-value=3.5e-08 Score=92.15 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=61.6
Q ss_pred cEEEEE-ECCeEEEEEEEeeec-CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEE--EccCC-cchhhh
Q 008580 255 KSVMVI-RGNVVVGGITYRPYV-SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFL--TYADN-NAVGYF 329 (561)
Q Consensus 255 ~slvl~-~~g~VIGGI~~R~f~-~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~l--t~AD~-~AigFY 329 (561)
..+++. .+|++||.+++...+ ....++|..++|.+++||+|||+.||.++++++++ .++..+. +..+| .|+.||
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~-~~~~~i~~~v~~~N~~a~~ly 118 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVAC-ERVRHLETTITPDNQASRALF 118 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHh-CCCCEEEEEEcCCCHHHHHHH
Confidence 344444 357999988764433 23457888899999999999999999999999987 5666544 34455 479999
Q ss_pred hhcCCcc
Q 008580 330 IKQGFTK 336 (561)
Q Consensus 330 kKqGFsk 336 (561)
+|+||..
T Consensus 119 ~k~G~~~ 125 (157)
T TIGR02406 119 KALARRR 125 (157)
T ss_pred HHhCccc
Confidence 9999965
No 78
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.76 E-value=7.6e-09 Score=117.00 Aligned_cols=87 Identities=33% Similarity=0.481 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 008580 447 SNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANART 526 (561)
Q Consensus 447 ~~~~~L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~ 526 (561)
..+..+...+. .+..+|+|.+||+++++|+||.||+.||||.++.+|+..+. |.+.++|+.|+.+||.||+.
T Consensus 289 ~~~~~~~~~~~-------~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~-y~~~~~fv~d~~~~~~n~~~ 360 (720)
T KOG1472|consen 289 IGQEELYEAAE-------RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGP-YCSKEEFVNDLMLIWRNCEK 360 (720)
T ss_pred ccCHHHHHHhc-------ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhcccc-ccchhHHHHHHHHHHhcchh
Confidence 34555555555 48899999999999999999999999999999999999987 89999999999999999999
Q ss_pred hCCCCCHHHHHHHHH
Q 008580 527 YNSPDTIYYKCATRL 541 (561)
Q Consensus 527 YN~pdS~~yk~A~~L 541 (561)
||...+.....-..+
T Consensus 361 ~n~ee~~~~~~~~vv 375 (720)
T KOG1472|consen 361 YNSEESHGLIEFAVI 375 (720)
T ss_pred hccccchhhhhhhhh
Confidence 999887655443333
No 79
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.76 E-value=1e-07 Score=86.45 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=70.8
Q ss_pred HHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecC-CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE-
Q 008580 242 KEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVS-QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT- 319 (561)
Q Consensus 242 keYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~-~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt- 319 (561)
..|+..+.-++.+..+++..+|++||.+++..+.. ...+++-+. +.+.+| ||||+.+|..+.+++.+..++..+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~ 116 (156)
T TIGR03585 39 LHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLE 116 (156)
T ss_pred HHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEE
Confidence 36667766666666777888899999998765432 345677644 899999 99999999999999986457766543
Q ss_pred -ccCCc-chhhhhhcCCccc
Q 008580 320 -YADNN-AVGYFIKQGFTKE 337 (561)
Q Consensus 320 -~AD~~-AigFYkKqGFsk~ 337 (561)
..+|. |+.||+|+||...
T Consensus 117 v~~~N~~s~~~y~k~Gf~~~ 136 (156)
T TIGR03585 117 VLEFNNKALKLYEKFGFERE 136 (156)
T ss_pred EeccCHHHHHHHHHcCCeEe
Confidence 34444 7999999999763
No 80
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=98.75 E-value=1.7e-07 Score=87.90 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=89.5
Q ss_pred CceEEEEEeCCChhhHHHHHHHHHHHHhhhC--C-CCc-----HHHHHhhhh--cCCC-cEEEEEECCeEEEEEEEeeec
Q 008580 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQL--P-NMP-----KEYIVRLVM--DRSH-KSVMVIRGNVVVGGITYRPYV 275 (561)
Q Consensus 207 g~i~f~vv~nd~~~~~~~~L~~lkniF~~qL--P-~Mp-----keYI~Rlv~--D~~h-~slvl~~~g~VIGGI~~R~f~ 275 (561)
..|.++-++-++......|+..-...+..-+ | .++ +++|.+... +... ..+++..+|++||.+++..+.
T Consensus 9 ~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~ 88 (179)
T PRK10151 9 ESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIE 88 (179)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeec
Confidence 4567777776666666666543222222211 1 111 467765432 2221 246776789999999876643
Q ss_pred -CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE--EEccCCc-chhhhhhcCCccccccccc
Q 008580 276 -SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF--LTYADNN-AVGYFIKQGFTKEIYLEKD 343 (561)
Q Consensus 276 -~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~--lt~AD~~-AigFYkKqGFsk~i~l~~~ 343 (561)
..+.+||-+ +|.+++||||||+.++..+.+++.+..++..+ .++++|. +..+|+|+||+....+.+.
T Consensus 89 ~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~ 159 (179)
T PRK10151 89 PLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQA 159 (179)
T ss_pred cCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccc
Confidence 335588876 69999999999999999999999864556654 3456666 6889999999875555433
No 81
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.75 E-value=7.8e-08 Score=90.81 Aligned_cols=94 Identities=20% Similarity=0.166 Sum_probs=69.6
Q ss_pred HHhhhhcCCCcEEEEEECCeEEEEEEEeeec-CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--cc
Q 008580 245 IVRLVMDRSHKSVMVIRGNVVVGGITYRPYV-SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YA 321 (561)
Q Consensus 245 I~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~-~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~A 321 (561)
+.+.+.+.....+++..+|++||.+.+.... ....+++. ++|.+++||+|||+.++..+.+++.+..++..+.. ..
T Consensus 48 ~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~ 126 (186)
T PRK15130 48 YDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDK 126 (186)
T ss_pred HHHhhhcccCcEEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEcc
Confidence 3344444555677888889999999775543 23456664 79999999999999999999999986457766544 33
Q ss_pred CC-cchhhhhhcCCccccc
Q 008580 322 DN-NAVGYFIKQGFTKEIY 339 (561)
Q Consensus 322 D~-~AigFYkKqGFsk~i~ 339 (561)
+| .|+.||+|.||+....
T Consensus 127 ~N~~s~~~yek~GF~~~~~ 145 (186)
T PRK15130 127 ENEKAIHIYRKLGFEVEGE 145 (186)
T ss_pred CCHHHHHHHHHCCCEEEEE
Confidence 45 5899999999976433
No 82
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.71 E-value=1.7e-08 Score=118.51 Aligned_cols=97 Identities=28% Similarity=0.538 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 008580 452 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPD 531 (561)
Q Consensus 452 L~~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pd 531 (561)
+.-++..+.+.+...+..-||..||+..+++|||.||+.||||.++++.+.... |.+-++|+.|+.||++|..+||++.
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~-y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRL-YESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHH-HHHHHHHHHHhHHHhhchhhhcCch
Confidence 556788889999999999999999999999999999999999999999999866 8999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 008580 532 TIYYKCATRLESHFQSKV 549 (561)
Q Consensus 532 S~~yk~A~~Lek~Fe~~l 549 (561)
+.+...+..+-...-..|
T Consensus 1341 ~~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999988877655444333
No 83
>PHA01807 hypothetical protein
Probab=98.70 E-value=1.6e-07 Score=88.83 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=72.5
Q ss_pred HHHHHHHHhhhCCCC-----cHHHH---HhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEE---EEeccCCccc
Q 008580 226 LIGLKNIFARQLPNM-----PKEYI---VRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAF---CAITADEQVK 294 (561)
Q Consensus 226 L~~lkniF~~qLP~M-----pkeYI---~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f---~AV~~~~QgK 294 (561)
+..|...+-+++|.. ..+.+ .+.+.+..+..+++..+|++||.+++.........++.. +.|.+++||+
T Consensus 17 ~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~ 96 (153)
T PHA01807 17 LQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNA 96 (153)
T ss_pred HHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCC
Confidence 444445556677875 12322 233344556667777889999999887654443455544 5899999999
Q ss_pred ChHHHHHHHHHHHHHhhcCceEEEE--ccC-Ccchhhhhhc
Q 008580 295 GYGTRLMNHLKQHARDVDGLTHFLT--YAD-NNAVGYFIKQ 332 (561)
Q Consensus 295 GyGt~Lmn~Lke~ak~~~gi~~~lt--~AD-~~AigFYkKq 332 (561)
|+|++||.++++++++ .|+..++. ..+ ..|+.||++-
T Consensus 97 GiG~~Ll~~~~~~Ar~-~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 97 GVAREFLRELIRLAGE-GNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred CHHHHHHHHHHHHHHH-CCCCEEEEEecCCcHHHHHHHHhc
Confidence 9999999999999998 67765433 223 3379999874
No 84
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.68 E-value=2.3e-08 Score=115.24 Aligned_cols=99 Identities=29% Similarity=0.408 Sum_probs=88.9
Q ss_pred HHHHHHHHhccC------CCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhC
Q 008580 455 FMRSLLKSMHDH------VDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYN 528 (561)
Q Consensus 455 ~~~~lL~~L~~h------~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN 528 (561)
.|..|+....++ ..+..|...++..++||||.+|++||++..|++++.... |.+..+...|+.++|.|++.||
T Consensus 1028 ~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1028 QALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHK-YNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccc-cchHHHHHHHHHhhcchhhhhc
Confidence 466666555533 556889999999999999999999999999999999987 8999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcC
Q 008580 529 SPDTIYYKCATRLESHFQSKVQSGLH 554 (561)
Q Consensus 529 ~pdS~~yk~A~~Lek~Fe~~lkeil~ 554 (561)
..+|.+|..|..|+++|....+++..
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhc
Confidence 99999999999999999998887764
No 85
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.67 E-value=2.1e-07 Score=96.76 Aligned_cols=122 Identities=17% Similarity=0.221 Sum_probs=85.4
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHhhhhcCCCcEEEEE-E----CCeEEEEEEEeeecCCceEEEE
Q 008580 209 LKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVI-R----GNVVVGGITYRPYVSQKFGEIA 283 (561)
Q Consensus 209 i~f~vv~nd~~~~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D~~h~slvl~-~----~g~VIGGI~~R~f~~~~f~EI~ 283 (561)
++++..+-++.+... -|..--|.|...-.....+.|.+.+-+. ..+++. . ++.+||.+.++.- ...++|.
T Consensus 187 ~~Ir~a~~~Dl~ri~-~L~~~tnqfn~~~~~~s~~~i~~~l~~~--~~~~~~~~d~~gd~givG~~~~~~~--~~~~~I~ 261 (320)
T TIGR01686 187 LNISKNDEQNVQRVE-ELLGRTNQFNATYTRLNQEDVAQHMQKE--EIVTVSMSDRFGDSGIIGIFVFEKK--EGNLFID 261 (320)
T ss_pred EEEEECChhhhHHHH-HHHHhHHhhhccCccCCHHHHHHHhcCC--CEEEEEEEecCCCCceEEEEEEEec--CCcEEEE
Confidence 455554444444333 3344455565444566778888877554 334332 2 4679999987653 5568999
Q ss_pred EEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE-c---cCC-cchhhhhhcCCcc
Q 008580 284 FCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT-Y---ADN-NAVGYFIKQGFTK 336 (561)
Q Consensus 284 f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt-~---AD~-~AigFYkKqGFsk 336 (561)
.++|++.+||+|+|+.||+++.+.+++ .|+..+.. + .+| .|..||+|+||+.
T Consensus 262 ~l~vs~r~~grGig~~Ll~~l~~~a~~-~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~ 318 (320)
T TIGR01686 262 DLCMSCRALGRGVETRMLRWLFEQALD-LGNHNARLYYRRTERNMPFLSFYEQIGFED 318 (320)
T ss_pred EEEEcHhHhcCcHHHHHHHHHHHHHHH-cCCCeEEEEEeeCCCchHHHHHHHHcCCcc
Confidence 999999999999999999999999998 78775433 2 234 5999999999963
No 86
>PRK10562 putative acetyltransferase; Provisional
Probab=98.66 E-value=8.3e-08 Score=87.27 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhh
Q 008580 252 RSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIK 331 (561)
Q Consensus 252 ~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkK 331 (561)
.....+++..+|++||.+++... .+|..++|.+++||+|||+.||+++++.+.. +...+...+..|+.||+|
T Consensus 46 ~~~~~~v~~~~~~~iG~~~~~~~-----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~---~~~~v~~~N~~s~~~y~k 117 (145)
T PRK10562 46 PAAQTWVWEEDGKLLGFVSVLEG-----RFVGALFVAPKAVRRGIGKALMQHVQQRYPH---LSLEVYQKNQRAVNFYHA 117 (145)
T ss_pred CcccEEEEEECCEEEEEEEEeec-----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCe---EEEEEEcCChHHHHHHHH
Confidence 34456777788999999886432 3566789999999999999999999886532 332333334468999999
Q ss_pred cCCcc
Q 008580 332 QGFTK 336 (561)
Q Consensus 332 qGFsk 336 (561)
+||+.
T Consensus 118 ~Gf~~ 122 (145)
T PRK10562 118 QGFRI 122 (145)
T ss_pred CCCEE
Confidence 99965
No 87
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.63 E-value=3e-07 Score=92.82 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=67.3
Q ss_pred CcHHHHHhhhhcC---CCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceE
Q 008580 240 MPKEYIVRLVMDR---SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTH 316 (561)
Q Consensus 240 MpkeYI~Rlv~D~---~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~ 316 (561)
.+.+++..+ .+. ....+++..+|++||.+.+...... ..+|..++|.|++||+|+|+.||.++++.++. . ..
T Consensus 30 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~~--~-~~ 104 (292)
T TIGR03448 30 VSEQVLRGL-REPGAGHTRHLVAVDSDPIVGYANLVPARGT-DPAMAELVVHPAHRRRGIGRALIRALLAKGGG--R-LR 104 (292)
T ss_pred CCHHHHhhc-cccCCCCceEEEEEECCEEEEEEEEEcCCCC-cceEEEEEECHhhcCCCHHHHHHHHHHHhccC--c-eE
Confidence 455655433 332 2245666778999999987665332 36889999999999999999999999998763 2 34
Q ss_pred EEEccCC-cchhhhhhcCCcc
Q 008580 317 FLTYADN-NAVGYFIKQGFTK 336 (561)
Q Consensus 317 ~lt~AD~-~AigFYkKqGFsk 336 (561)
+.+..+| .|+.||+|+||..
T Consensus 105 ~~~~~~n~~a~~fy~~~Gf~~ 125 (292)
T TIGR03448 105 VWAHGDLPAARALASRLGLVP 125 (292)
T ss_pred EEEcCCCHHHHHHHHHCCCEE
Confidence 5555554 5899999999964
No 88
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=98.57 E-value=1e-06 Score=83.95 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=61.8
Q ss_pred CCcEEEEEE--CCeEEEEEEEeeecC--CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE--EEccCCc-c
Q 008580 253 SHKSVMVIR--GNVVVGGITYRPYVS--QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF--LTYADNN-A 325 (561)
Q Consensus 253 ~h~slvl~~--~g~VIGGI~~R~f~~--~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~--lt~AD~~-A 325 (561)
....+++.. +|++||.|.+..+.. ...+||- ++|.+.+||||||+.++..+.+++.+..++..+ .+..+|. |
T Consensus 74 ~~~~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S 152 (194)
T PRK10809 74 SAFYFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRS 152 (194)
T ss_pred cEEEEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHH
Confidence 334556543 579999998776532 2335554 689999999999999999999999874577764 3455554 7
Q ss_pred hhhhhhcCCcc
Q 008580 326 VGYFIKQGFTK 336 (561)
Q Consensus 326 igFYkKqGFsk 336 (561)
..+|+|+||..
T Consensus 153 ~~l~ek~Gf~~ 163 (194)
T PRK10809 153 GDLLARLGFEK 163 (194)
T ss_pred HHHHHHCCCcE
Confidence 99999999964
No 89
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.56 E-value=4.9e-07 Score=100.98 Aligned_cols=94 Identities=16% Similarity=0.289 Sum_probs=69.6
Q ss_pred HHHHHhhhhcCCCcEEEEEE--CCeEEEEEEEee----ecC-CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCc
Q 008580 242 KEYIVRLVMDRSHKSVMVIR--GNVVVGGITYRP----YVS-QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGL 314 (561)
Q Consensus 242 keYI~Rlv~D~~h~slvl~~--~g~VIGGI~~R~----f~~-~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi 314 (561)
.+++.+...+.....+++.. +|+|||.+++.. +.. ....+|..++|.++|||+|||+.||+++.+++++ .|+
T Consensus 111 ~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~-~G~ 189 (547)
T TIGR03103 111 VDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQS-RGC 189 (547)
T ss_pred HHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCC
Confidence 45555554455555666664 589999986532 211 2246888899999999999999999999999998 777
Q ss_pred eEEE--EccCC-cchhhhhhcCCcc
Q 008580 315 THFL--TYADN-NAVGYFIKQGFTK 336 (561)
Q Consensus 315 ~~~l--t~AD~-~AigFYkKqGFsk 336 (561)
..+. +..+| .|+.||+|.||..
T Consensus 190 ~~i~L~V~~~N~~Ai~fY~klGf~~ 214 (547)
T TIGR03103 190 AYMDLSVMHDNEQAIALYEKLGFRR 214 (547)
T ss_pred CEEEEEEcCCCHHHHHHHHHCCCEE
Confidence 6543 45555 4899999999965
No 90
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.54 E-value=1e-06 Score=83.95 Aligned_cols=112 Identities=17% Similarity=0.292 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhhCCCCcHHHHHhhhhcC-CCcEEEEEECCe-EEEEEEEeeecCC--ceEEEEEEEeccCCcccChHHHH
Q 008580 225 WLIGLKNIFARQLPNMPKEYIVRLVMDR-SHKSVMVIRGNV-VVGGITYRPYVSQ--KFGEIAFCAITADEQVKGYGTRL 300 (561)
Q Consensus 225 ~L~~lkniF~~qLP~MpkeYI~Rlv~D~-~h~slvl~~~g~-VIGGI~~R~f~~~--~f~EI~f~AV~~~~QgKGyGt~L 300 (561)
.|.....+-.+.|++==+.|-.|-.--. ...+++..+++. -||.|.+..-... .-++|.-+||.+++||+|||+.|
T Consensus 26 ~l~~im~Li~k~lsepyS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aL 105 (165)
T KOG3139|consen 26 YLADIMRLIDKDLSEPYSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKAL 105 (165)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHH
Confidence 3444555666777765456655532222 345566655544 5999976663333 35899999999999999999999
Q ss_pred HHHHHHHHHhhcCceEEEEcc---CCcchhhhhhcCCccc
Q 008580 301 MNHLKQHARDVDGLTHFLTYA---DNNAVGYFIKQGFTKE 337 (561)
Q Consensus 301 mn~Lke~ak~~~gi~~~lt~A---D~~AigFYkKqGFsk~ 337 (561)
+....+.++. .|+..++..+ +..|..+|++.||...
T Consensus 106 vr~aId~m~~-~g~~eVvLeTe~~n~~A~~LY~sLGF~r~ 144 (165)
T KOG3139|consen 106 VRKAIDAMRS-RGYSEVVLETEVTNLSALRLYESLGFKRD 144 (165)
T ss_pred HHHHHHHHHH-CCCcEEEEeccccchHHHHHHHhcCceEe
Confidence 9999999998 8888877644 3459999999999663
No 91
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=8.9e-07 Score=85.35 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=78.5
Q ss_pred CcEEEEEEC-CeEEEEEEEeeecCC---ceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccCCc-ch
Q 008580 254 HKSVMVIRG-NVVVGGITYRPYVSQ---KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNN-AV 326 (561)
Q Consensus 254 h~slvl~~~-g~VIGGI~~R~f~~~---~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD~~-Ai 326 (561)
+.-+|+..+ |+|+|+.++..|... ...--..+-|.++.||||+|++||..|.++++. .|+..++- ..+|. ++
T Consensus 52 ~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~-~g~~~lva~I~~~n~aSi 130 (169)
T COG1247 52 YPVVVAEEEDGKVLGYASAGPFRERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARA-LGVRELVAGIESDNLASI 130 (169)
T ss_pred ceEEEEEcCCCeEEEEEEeeeccCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHh-CCeEEEEEEEcCCCcHhH
Confidence 355566555 899999987776533 223334488999999999999999999999998 88876544 44555 59
Q ss_pred hhhhhcCCccccccccceeeeeeec-CCCceeEeeeeCC
Q 008580 327 GYFIKQGFTKEIYLEKDRWQGYIKD-YDGGILMECKIDP 364 (561)
Q Consensus 327 gFYkKqGFsk~i~l~~~~w~G~IKd-YegatLM~C~l~p 364 (561)
+|++|.||.+..++++. |+.-+ +=+.+||++.|..
T Consensus 131 ~lh~~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 131 ALHEKLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred HHHHHCCCEEecccccc---ccccceEEeeeeeehhhcc
Confidence 99999999998888876 22111 2366788877653
No 92
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.48 E-value=4.3e-07 Score=91.69 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=59.8
Q ss_pred EEEEEE--CCeEEEEEEEeeecC-CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccCC-cchhhh
Q 008580 256 SVMVIR--GNVVVGGITYRPYVS-QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADN-NAVGYF 329 (561)
Q Consensus 256 slvl~~--~g~VIGGI~~R~f~~-~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD~-~AigFY 329 (561)
.+++.. +|++||.+.+..... ....+|..++|.++|||||||+.||.++.+++++ .++..+.+ ..+| .|+.||
T Consensus 200 ~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~-~g~~~v~l~v~~~N~~a~~~y 278 (292)
T TIGR03448 200 LFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAA-RGLPAVMLYVEADNEAAVRTY 278 (292)
T ss_pred eEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEEEeCCCHHHHHHH
Confidence 455555 589999875554332 2345666689999999999999999999999997 67665443 3344 489999
Q ss_pred hhcCCcc
Q 008580 330 IKQGFTK 336 (561)
Q Consensus 330 kKqGFsk 336 (561)
+|.||+.
T Consensus 279 ~k~GF~~ 285 (292)
T TIGR03448 279 EKLGFTV 285 (292)
T ss_pred HHcCCEE
Confidence 9999964
No 93
>PRK01346 hypothetical protein; Provisional
Probab=98.48 E-value=1e-06 Score=93.96 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=65.1
Q ss_pred CCcEEEEEECCeEEEEEEEeeec-----C--CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcc
Q 008580 253 SHKSVMVIRGNVVVGGITYRPYV-----S--QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNA 325 (561)
Q Consensus 253 ~h~slvl~~~g~VIGGI~~R~f~-----~--~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~A 325 (561)
.+..+++..+|++||.+...++. . .....|..++|.|+|||+|+|+.||.++.+.+++ .|+..++.+...
T Consensus 46 ~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~-~g~~~~~L~~~~-- 122 (411)
T PRK01346 46 PDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRE-RGEPVAALTASE-- 122 (411)
T ss_pred cCCeEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHH-CCCcEEEEECCc--
Confidence 34567788889999998765432 1 1458899999999999999999999999999998 787766666544
Q ss_pred hhhhhhcCCcc
Q 008580 326 VGYFIKQGFTK 336 (561)
Q Consensus 326 igFYkKqGFsk 336 (561)
..||+|.||..
T Consensus 123 ~~~Y~r~Gf~~ 133 (411)
T PRK01346 123 GGIYGRFGYGP 133 (411)
T ss_pred hhhHhhCCCee
Confidence 47999999954
No 94
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.46 E-value=1.8e-06 Score=80.33 Aligned_cols=119 Identities=22% Similarity=0.344 Sum_probs=79.8
Q ss_pred ceEEEEEeCCChhh-HHHHHHHH-------HHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEEC--CeEEEEEEEeeecCC
Q 008580 208 NLKFVCLSNDGIDE-HMVWLIGL-------KNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRG--NVVVGGITYRPYVSQ 277 (561)
Q Consensus 208 ~i~f~vv~nd~~~~-~~~~L~~l-------kniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~~--g~VIGGI~~R~f~~~ 277 (561)
...++-+.+|+-.+ .+.+|-.| +..|.++.-.|-+ +-..+.-+|+.+. ++|||..+. +-+.
T Consensus 6 ~~~lR~L~~~D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~-------~~~~Y~i~Vied~~s~~vigtatL--~IE~ 76 (150)
T KOG3396|consen 6 GFKLRPLEEDDYGKGFIELLKQLTSVGVVTREQFEKRFEAMKK-------SGDWYYIVVIEDKESEKVIGTATL--FIER 76 (150)
T ss_pred ceEEeecccccccchHHHHHHHHhhccccCHHHHHHHHHHHHh-------cCCcEEEEEEEeCCcCeEEEEEEE--EEeh
Confidence 36777788886554 44455444 3334443222211 1122344444442 799996553 3223
Q ss_pred ce-------EEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCcc
Q 008580 278 KF-------GEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 278 ~f-------~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk 336 (561)
.| .-|.-++|++++||||+|+.|+..|.+.++. .|++.+..-.+..-++||+||||+.
T Consensus 77 KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~-lgcYKi~LdC~~~nv~FYeKcG~s~ 141 (150)
T KOG3396|consen 77 KFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKS-LGCYKIILDCDPKNVKFYEKCGYSN 141 (150)
T ss_pred hhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHh-cCcEEEEEecchhhhhHHHHcCccc
Confidence 32 3566688999999999999999999999998 7888877777777899999999976
No 95
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.43 E-value=5.9e-08 Score=110.16 Aligned_cols=95 Identities=40% Similarity=0.652 Sum_probs=86.2
Q ss_pred HhccCCCCCCCcCCCCCC--CCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q 008580 462 SMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCAT 539 (561)
Q Consensus 462 ~L~~h~~A~pF~~PVd~~--evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~yk~A~ 539 (561)
....|.++|+|..||+.. ..|+||.+|++|||++||+.++++ .||.+..+-.+|+..+|.||..||.+...++.+++
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~-n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVEN-NYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhcc-CccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 345789999999999965 689999999999999999999998 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCc
Q 008580 540 RLESHFQSKVQSGLHSST 557 (561)
Q Consensus 540 ~Lek~Fe~~lkeil~~~~ 557 (561)
.++..|.+.+..++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (640)
T KOG1474|consen 82 SLEKLFPKKLRSMPSDEE 99 (640)
T ss_pred cchhhccccccccccccc
Confidence 999999888777665543
No 96
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=98.38 E-value=6.9e-07 Score=87.34 Aligned_cols=89 Identities=15% Similarity=0.325 Sum_probs=65.1
Q ss_pred hhhhcCCCcEEEEEECCeEEEEEEEee--ecCC-------ceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhc---Cc
Q 008580 247 RLVMDRSHKSVMVIRGNVVVGGITYRP--YVSQ-------KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVD---GL 314 (561)
Q Consensus 247 Rlv~D~~h~slvl~~~g~VIGGI~~R~--f~~~-------~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~---gi 314 (561)
..+.+.....+++.. +..|||++++. +..+ .+++|.++.|-+.||.+|||+.||+++++++.+.+ ++
T Consensus 49 ~~~~~~~~~~~A~~~-~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v 127 (187)
T KOG3138|consen 49 DVLSNGDLTQLAYYN-EIAVGAVACKLIKFVQNAKRLFGNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRV 127 (187)
T ss_pred HHHhcCCHHHhhhhc-cccccceeeeehhhhhhhhhhhccceeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceE
Confidence 333334445555544 44666666555 2221 15899999999999999999999999999998732 24
Q ss_pred eEEEEccCCcchhhhhhcCCcc
Q 008580 315 THFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 315 ~~~lt~AD~~AigFYkKqGFsk 336 (561)
...+...++.|+.||+|.||+.
T Consensus 128 ~lHv~~~n~~ai~~Y~~~gF~~ 149 (187)
T KOG3138|consen 128 YLHVQAVNESAIEFYEKRGFEI 149 (187)
T ss_pred EEEEEeCCCcHHHHHHhcCceE
Confidence 5566688899999999999965
No 97
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.33 E-value=1.2e-07 Score=101.01 Aligned_cols=211 Identities=28% Similarity=0.358 Sum_probs=151.5
Q ss_pred CcchhhhhhcCCccccccccceeeeeeecCCCceeEeeeeCCCCCccchhHHHHHHHHHHHHHHHH----h-hccccccC
Q 008580 323 NNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRE----L-SNCHIVYP 397 (561)
Q Consensus 323 ~~AigFYkKqGFsk~i~l~~~~w~G~IKdYegatLM~C~l~p~i~Y~~~~~~i~~Qk~~i~~~i~~----~-s~~~iVyp 397 (561)
++++..+.++++......-...|.+.+..+++.+.++|.-.| |+|..+..-|+.++-...+.+.. + ++|.. |-
T Consensus 147 ~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~P-m~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~-yN 224 (371)
T COG5076 147 NKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSP-MDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKL-YN 224 (371)
T ss_pred HHHHHHHHHHhhcccccccccccccCCccccCCChheeecch-hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-cc
Confidence 356777788888888888888999999999999999999999 99999988888776554444432 2 34433 22
Q ss_pred CCcccccccCCCccccCCCCCCcccccC-CCCCCCCCccccccccCCCCcccHHHHHHHHHHHHHHhccCCCCCCCcCCC
Q 008580 398 GIDFQKKEAGVPKKIIKVEDIPGLREAG-WTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLLKSMHDHVDAWPFKEPV 476 (561)
Q Consensus 398 GL~~~k~e~g~p~k~i~~~~IPGl~EaG-wtp~~~~~sr~r~~~~s~d~~~~~~~L~~~~~~lL~~L~~h~~A~pF~~PV 476 (561)
+-+.+-- ...+....++..... |.+........... ..+.. .-..++.....+..+|+|..++
T Consensus 225 ~~~s~v~------~~a~~l~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~-------~~~~~i~~~~~~~~~~~~~~~~ 288 (371)
T COG5076 225 GPDSSVY------VDAKELEKYFLKLIEEIPEEMLELSIKPGR---EEREE-------RESVLITNSQAHVGAWPFLRPV 288 (371)
T ss_pred CCCcchh------hhhHHHHHHHHHHHHhccccchhhccCccc---ccccc-------chhhcccccccccccccccccC
Confidence 2222100 111122223333333 43333322211100 00000 2233445557788899999999
Q ss_pred CCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 008580 477 DARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSG 552 (561)
Q Consensus 477 d~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~yk~A~~Lek~Fe~~lkei 552 (561)
+....|+|+++|..+|++++++.++..+ ||...+.|..|..++|+||..||+....+++.+..+..++...+...
T Consensus 289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 289 SDEEVPDYYKDIRDPMDLSTKELKLRNN-YYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred Ccccccchhhhhhcccccccchhhhhcc-cCCCccccccccchhhhcccccchhhhhhhhhccchhhhHhhhhhhh
Confidence 9999999999999999999999998876 58999999999999999999999999999999999999998877654
No 98
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=98.32 E-value=4.8e-06 Score=80.51 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=76.7
Q ss_pred CCcEEEEEECCeEEEEEEEeeecCC----ceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhh
Q 008580 253 SHKSVMVIRGNVVVGGITYRPYVSQ----KFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGY 328 (561)
Q Consensus 253 ~h~slvl~~~g~VIGGI~~R~f~~~----~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigF 328 (561)
...++|...+|+|||-|-+..+.-. +..-+.-+||.+++||||+|+.||.+.++.++. .|...+++..| ..|
T Consensus 45 ~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~-~G~~~v~vlGd---p~Y 120 (171)
T COG3153 45 LTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRL-AGASAVVVLGD---PTY 120 (171)
T ss_pred cceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHH-CCCCEEEEecC---ccc
Confidence 4677888888999999977765422 456677799999999999999999999999998 89888888744 569
Q ss_pred hhhcCCccccccccceeeeeeec---CCCceeEeeeeCCC
Q 008580 329 FIKQGFTKEIYLEKDRWQGYIKD---YDGGILMECKIDPK 365 (561)
Q Consensus 329 YkKqGFsk~i~l~~~~w~G~IKd---YegatLM~C~l~p~ 365 (561)
|.+.||+..- ...|.- ++.-.+|.+.|...
T Consensus 121 Y~rfGF~~~~-------~~~l~~p~~~~~~~fl~~~L~~~ 153 (171)
T COG3153 121 YSRFGFEPAA-------GAKLYAPGPVPDERFLALELGDG 153 (171)
T ss_pred ccccCcEEcc-------ccccccCCCCCCceEEEEEccCC
Confidence 9999995411 111222 45666777766653
No 99
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.27 E-value=3.2e-06 Score=72.24 Aligned_cols=56 Identities=27% Similarity=0.427 Sum_probs=44.1
Q ss_pred EEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceE-EEEccCC-cchhhhhhcCCcc
Q 008580 280 GEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTH-FLTYADN-NAVGYFIKQGFTK 336 (561)
Q Consensus 280 ~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~-~lt~AD~-~AigFYkKqGFsk 336 (561)
++|..+.|.|++||||||+.|+..|.+.+.+ .+..- +.+..+| .|+.||+|-||+.
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~-~g~~~~l~v~~~N~~s~~ly~klGf~~ 79 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLE-RGKTPFLYVDADNEASIRLYEKLGFRE 79 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHH-TTSEEEEEEETT-HHHHHHHHHCT-EE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHh-CCCcEEEEEECCCHHHHHHHHHcCCEE
Confidence 7899999999999999999999999999887 55543 4444555 4899999999965
No 100
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=98.25 E-value=7.6e-06 Score=72.62 Aligned_cols=124 Identities=24% Similarity=0.272 Sum_probs=77.9
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHhh---hCCCCc----HHHHHhhhhc--CC--CcEEEEEEC--CeEEEEEEEee-e
Q 008580 209 LKFVCLSNDGIDEHMVWLIGLKNIFAR---QLPNMP----KEYIVRLVMD--RS--HKSVMVIRG--NVVVGGITYRP-Y 274 (561)
Q Consensus 209 i~f~vv~nd~~~~~~~~L~~lkniF~~---qLP~Mp----keYI~Rlv~D--~~--h~slvl~~~--g~VIGGI~~R~-f 274 (561)
|.++-++-++.+..+.|+ .-..+... ..+.++ .+|+.+ ..+ .. ...+++... +++||.|.+.. .
T Consensus 2 l~lr~~~~~D~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~ 79 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWR-SDPEIRRYLPWGPPWPTLEEAEEWIQS-RQDSWENHGYYYFAIEDKDDGEIIGFIGLYNID 79 (142)
T ss_dssp EEEEE-HGGGHHHHHHHH-TTTTHCTTSSTTTSSSSHHHHHHHHHH-HHHCHHEETEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred EEEEcCCHHHHHHHHHHh-cCHHHHHhcCCCCCCCCHHHHHHHHHH-hhhhhhcccceEEEEEeccCCceEEEeeeeecc
Confidence 556666655555555555 22333333 112123 245553 112 11 344555543 47999998844 3
Q ss_pred cCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccCCc-chhhhhhcCCc
Q 008580 275 VSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNN-AVGYFIKQGFT 335 (561)
Q Consensus 275 ~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD~~-AigFYkKqGFs 335 (561)
.....+||. ++|.+++||+|||+.++..+.+++.+..++..+.. .++|. +..+++|.||+
T Consensus 80 ~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 80 KNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred cCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 467889988 56888899999999999999999954477776544 55555 68899999994
No 101
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.24 E-value=4.7e-06 Score=81.44 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=61.8
Q ss_pred EEEEECC-eEEEEEEEeeecCCc--eEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCce-EEEE--ccCCcchhhhh
Q 008580 257 VMVIRGN-VVVGGITYRPYVSQK--FGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLT-HFLT--YADNNAVGYFI 330 (561)
Q Consensus 257 lvl~~~g-~VIGGI~~R~f~~~~--f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~-~~lt--~AD~~AigFYk 330 (561)
+++..++ ++||++.||.-.+.+ .+.+-.+-|.+.|||||||+.||.+|...+..+ ... .+|| -.+..|++||+
T Consensus 95 i~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~-~~~kVmLTVf~~N~~al~Fy~ 173 (202)
T KOG2488|consen 95 ICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSR-HMRKVMLTVFSENIRALGFYH 173 (202)
T ss_pred EEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHH-HhhhheeeeecccchhHHHHH
Confidence 3344443 899999999876666 444444679999999999999999999888762 333 3344 33455999999
Q ss_pred hcCCcccccccc
Q 008580 331 KQGFTKEIYLEK 342 (561)
Q Consensus 331 KqGFsk~i~l~~ 342 (561)
+.||.....=|.
T Consensus 174 ~~gf~~~~~sp~ 185 (202)
T KOG2488|consen 174 RLGFVVDEESPC 185 (202)
T ss_pred HcCcccCCCCCc
Confidence 999976555443
No 102
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.23 E-value=8.5e-06 Score=60.41 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=51.0
Q ss_pred EEEEECCeEEEEEEEeeec-CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE
Q 008580 257 VMVIRGNVVVGGITYRPYV-SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT 319 (561)
Q Consensus 257 lvl~~~g~VIGGI~~R~f~-~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt 319 (561)
+++..++++||.+.+.... ....++|..++|.+++|++|+|++||.++.+++++ .++..+..
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~-~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARE-RGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHH-cCCcEEEe
Confidence 4555678999999876643 24668999999999999999999999999999997 77776643
No 103
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=98.20 E-value=3.8e-05 Score=72.93 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=87.7
Q ss_pred CceEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCcHHHHHh-hhhcC--CCcEEEEEE--CCeEEEEEEEee-e---cC
Q 008580 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQL-PNMPKEYIVR-LVMDR--SHKSVMVIR--GNVVVGGITYRP-Y---VS 276 (561)
Q Consensus 207 g~i~f~vv~nd~~~~~~~~L~~lkniF~~qL-P~MpkeYI~R-lv~D~--~h~slvl~~--~g~VIGGI~~R~-f---~~ 276 (561)
+.|+++.++-++.+.-+.++-++..--...- +..-.+-+.+ +-.|+ .|...+.++ ++.|+|.+.|-. | ..
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~ 81 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLG 81 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecccccccc
Confidence 5688888998888887777777654333332 2222344444 32343 444444444 468888886544 2 23
Q ss_pred CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceE--EEE-ccCCcchhhhhhcCCcc
Q 008580 277 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTH--FLT-YADNNAVGYFIKQGFTK 336 (561)
Q Consensus 277 ~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~--~lt-~AD~~AigFYkKqGFsk 336 (561)
..-+.|.=+-|.+.|||||+|+.|+..+-+.|.+ .|+.. +++ --+..|+.||+|.|++.
T Consensus 82 k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~-~G~~rv~w~vldwN~rAi~lY~k~gaq~ 143 (163)
T KOG3216|consen 82 KQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADK-LGTPRVEWVVLDWNHRAILLYEKVGAQD 143 (163)
T ss_pred cceEEEEeeEecchhcccChHHHHHHHHHHHHHH-cCCCcEEEEEeccchhHHHHHHHhCccc
Confidence 2447777799999999999999999999999987 55553 333 33456999999999965
No 104
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.17 E-value=1.1e-05 Score=68.08 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=59.3
Q ss_pred EEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhc
Q 008580 257 VMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (561)
Q Consensus 257 lvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKq 332 (561)
|.+..+|+.+|.|.|+. ..+-..|...-|.+++||+|+|+.||+.+.+++++ .+.+.+-++ -++..||+|+
T Consensus 2 F~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~-~~~kv~p~C--~y~~~~~~~h 72 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARE-NGLKVVPTC--SYVAKYFRRH 72 (78)
T ss_dssp EEEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHH-TT-EEEETS--HHHHHHHHH-
T ss_pred EEEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCEEEEEC--HHHHHHHHhC
Confidence 55667789999999987 57778899999999999999999999999999998 888877666 6788888876
No 105
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.11 E-value=8.1e-06 Score=90.94 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=62.9
Q ss_pred cEEEEEE---CCeEEEEEEEeeecCC-------ceEEEEEEE-----------eccCCcccChHHHHHHHHHHHHHhhcC
Q 008580 255 KSVMVIR---GNVVVGGITYRPYVSQ-------KFGEIAFCA-----------ITADEQVKGYGTRLMNHLKQHARDVDG 313 (561)
Q Consensus 255 ~slvl~~---~g~VIGGI~~R~f~~~-------~f~EI~f~A-----------V~~~~QgKGyGt~Lmn~Lke~ak~~~g 313 (561)
.+|.-+. ++.+||.+.+|.-... +.+-|..+. +.++||++|||++||+++++.+++ .|
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~-~G 490 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAE-EG 490 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHH-CC
Confidence 5566555 4689999988864321 123333344 358999999999999999999998 79
Q ss_pred ceEEEEccCCcchhhhhhcCCcc
Q 008580 314 LTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 314 i~~~lt~AD~~AigFYkKqGFsk 336 (561)
+..+.+.++..|..||+|+||..
T Consensus 491 ~~~i~v~s~~~A~~FY~klGf~~ 513 (522)
T TIGR01211 491 SEKILVISGIGVREYYRKLGYEL 513 (522)
T ss_pred CCEEEEeeCchHHHHHHHCCCEE
Confidence 99888888888999999999964
No 106
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.04 E-value=2.6e-05 Score=76.99 Aligned_cols=112 Identities=20% Similarity=0.316 Sum_probs=68.3
Q ss_pred HHHHHhhhhcCCCcEEEEEECC--eEEEEEEEee------------------------------------ecCCceEEEE
Q 008580 242 KEYIVRLVMDRSHKSVMVIRGN--VVVGGITYRP------------------------------------YVSQKFGEIA 283 (561)
Q Consensus 242 keYI~Rlv~D~~h~slvl~~~g--~VIGGI~~R~------------------------------------f~~~~f~EI~ 283 (561)
.+-+.+|.=+++|.-+++...+ +|+|.+-.-. |.....+=|+
T Consensus 15 PnDL~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIv 94 (196)
T PF13718_consen 15 PNDLQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIV 94 (196)
T ss_dssp HHHHHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEE
T ss_pred HHHHHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEE
Confidence 3456666666799999999888 9999773210 1122227789
Q ss_pred EEEeccCCcccChHHHHHHHHHHHHH-------------------------hhcCceEEEE-ccCCc-chhhhhhcCCcc
Q 008580 284 FCAITADEQVKGYGTRLMNHLKQHAR-------------------------DVDGLTHFLT-YADNN-AVGYFIKQGFTK 336 (561)
Q Consensus 284 f~AV~~~~QgKGyGt~Lmn~Lke~ak-------------------------~~~gi~~~lt-~AD~~-AigFYkKqGFsk 336 (561)
-+||.|++|++|||++|++.++++++ . .++-++=+ |.-.. =..||+|+||.-
T Consensus 95 RIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~vDylGtSFG~t~~Ll~FW~k~gf~p 173 (196)
T PF13718_consen 95 RIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRP-PGVDYLGTSFGATPELLKFWQKNGFVP 173 (196)
T ss_dssp EEEE-CCC-SSSHHHHHHHHHHHT------------------------------S-SEEEEEEE--HHHHHHHHCTT-EE
T ss_pred EEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc-cCCCEEEeccCCCHHHHHHHHHCCcEE
Confidence 99999999999999999999999993 3 56666544 22222 367999999954
Q ss_pred ccccccceeeeeeecC---CCceeEeee
Q 008580 337 EIYLEKDRWQGYIKDY---DGGILMECK 361 (561)
Q Consensus 337 ~i~l~~~~w~G~IKdY---egatLM~C~ 361 (561)
++.|..+|- |-+.+|-..
T Consensus 174 -------v~l~~~~n~~SGe~S~imlr~ 194 (196)
T PF13718_consen 174 -------VYLGQTRNEASGEHSAIMLRP 194 (196)
T ss_dssp -------EEE-SS--TTT---EEEEEEE
T ss_pred -------EEEecCcccccCceeeeEEee
Confidence 777777766 445555443
No 107
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.97 E-value=1.4e-06 Score=92.25 Aligned_cols=95 Identities=25% Similarity=0.314 Sum_probs=79.8
Q ss_pred HHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHH
Q 008580 456 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYY 535 (561)
Q Consensus 456 ~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~y 535 (561)
.+.++..+-+...-..|.-||...-.|+|.++|+.|||+.||+.|++.+. |.+..+|..|.++|..|+..||..++.++
T Consensus 24 ~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~-yl~L~~m~~d~kl~~~na~~yn~~~Tv~~ 102 (418)
T KOG1828|consen 24 AEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTR-YLVLSQMEFDRKLPDGNATLYNLHPTVPI 102 (418)
T ss_pred HHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCcc-ceechhhhhhhcccccchhhhhcCCcccc
Confidence 34445555555455567778888889999999999999999999999865 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 008580 536 KCATRLESHFQSKVQS 551 (561)
Q Consensus 536 k~A~~Lek~Fe~~lke 551 (561)
..|.+|..+-....++
T Consensus 103 ~aaKrL~~v~~~~~qe 118 (418)
T KOG1828|consen 103 VAAKRLCPVRLGMTQE 118 (418)
T ss_pred ccccccchhhcchhhH
Confidence 9999998776655553
No 108
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.96 E-value=6.4e-06 Score=87.45 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccCCCCCCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 008580 454 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTI 533 (561)
Q Consensus 454 ~~~~~lL~~L~~h~~A~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~ 533 (561)
..+.....++........|..|+....+|.|--+|++|+|..|++.|..++. |.| -+|..|..||+.|+++||.+++.
T Consensus 211 ~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~and-y~S-~~f~~D~kl~~l~amT~gehsk~ 288 (418)
T KOG1828|consen 211 QLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSAND-YES-LSFTQDRKLIALKAVTNGEHSKS 288 (418)
T ss_pred HHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhh-hhh-hhhhcccchhhHHHHhcCCcchH
Confidence 3444455667777778889999999999999999999999999999999875 899 78999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008580 534 YYKCATRLES 543 (561)
Q Consensus 534 ~yk~A~~Lek 543 (561)
||..|+++..
T Consensus 289 yyelank~lh 298 (418)
T KOG1828|consen 289 YYELANKQLH 298 (418)
T ss_pred HHHHHHhhhh
Confidence 9999998765
No 109
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.86 E-value=3.6e-05 Score=74.52 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhCCCCcHHHH--HhhhhcCCCcEEEEEECC--eEEEEEEEeeecCCceEEE-EEEEeccCCcccChHHH
Q 008580 225 WLIGLKNIFARQLPNMPKEYI--VRLVMDRSHKSVMVIRGN--VVVGGITYRPYVSQKFGEI-AFCAITADEQVKGYGTR 299 (561)
Q Consensus 225 ~L~~lkniF~~qLP~MpkeYI--~Rlv~D~~h~slvl~~~g--~VIGGI~~R~f~~~~f~EI-~f~AV~~~~QgKGyGt~ 299 (561)
+|.+.-.+.--|-|+-..... -..--|.--.++++..++ +|||-.-.-..+++.-+-. ..+.|+..+||+|+|+.
T Consensus 24 Llk~~~~LIN~eWPRS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~ 103 (225)
T KOG3397|consen 24 LLKESMTLINSEWPRSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKF 103 (225)
T ss_pred HHHHHHHHHhccCCccchhhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHH
Confidence 444445555567776544332 333445666788887764 8999665444454433322 23779999999999999
Q ss_pred HHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCcc
Q 008580 300 LMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 300 Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk 336 (561)
||+.++.++|. .++..+...++++ .+||+.-||++
T Consensus 104 lMk~~E~~~R~-~gf~~~yLsT~DQ-~~FYe~lGYe~ 138 (225)
T KOG3397|consen 104 LMKSTEKWMRE-KGFNEAYLSTDDQ-CRFYESLGYEK 138 (225)
T ss_pred HHHHHHHHHHH-hhhhheeeecccc-hhhhhhhcccc
Confidence 99999999998 7777665555444 79999999965
No 110
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00027 Score=64.69 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=61.5
Q ss_pred CeEEEEEEEeeec---CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE--EEccCCc-chhhhhhcCCcc
Q 008580 263 NVVVGGITYRPYV---SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF--LTYADNN-AVGYFIKQGFTK 336 (561)
Q Consensus 263 g~VIGGI~~R~f~---~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~--lt~AD~~-AigFYkKqGFsk 336 (561)
+++||.|.+..+. ..+.+||-+ .+.+.++|+|||+..+..+.+++-+..++..+ .+.++|. +...++|.||..
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~ig~-~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEIGY-WLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEEEE-EEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 3899999887765 356677765 55999999999999999999999875666654 3456666 588999999987
Q ss_pred cccccc
Q 008580 337 EIYLEK 342 (561)
Q Consensus 337 ~i~l~~ 342 (561)
+..+..
T Consensus 156 eg~~~~ 161 (187)
T COG1670 156 EGELRQ 161 (187)
T ss_pred hhhhhh
Confidence 555444
No 111
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=97.55 E-value=0.00059 Score=70.34 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=65.0
Q ss_pred HHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEcc
Q 008580 242 KEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYA 321 (561)
Q Consensus 242 keYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~A 321 (561)
.+|+.+. .+++++++|+||+++..... ..+.+||. ++..++|||||+++.+...+.++|.+ .++.=.+...
T Consensus 159 e~Fl~~G------~Gf~i~~~~~iVs~~~s~~~-~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~-~~l~P~WDc~ 229 (265)
T PF12746_consen 159 EDFLKNG------FGFCILHDGEIVSGCSSYFV-YENGIEID-IETHPEYRGKGLATAVAAAFILECLE-NGLYPSWDCH 229 (265)
T ss_dssp HHHHHH--------EEEEEETTEEEEEEEEEEE-ETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHH-TT-EEE-EES
T ss_pred HHHHhcC------cEEEEEECCEEEEEEEEEEE-ECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHH-CCCCcCeeCC
Confidence 4555555 78999999999998754432 25568886 68899999999999999999999998 8888777776
Q ss_pred CCcchhhhhhcCCcc
Q 008580 322 DNNAVGYFIKQGFTK 336 (561)
Q Consensus 322 D~~AigFYkKqGFsk 336 (561)
+..++..=+|.||+-
T Consensus 230 N~~S~~lA~kLGf~~ 244 (265)
T PF12746_consen 230 NLASIALAEKLGFHF 244 (265)
T ss_dssp SHHHHHHHHHCT--E
T ss_pred CHHHHHHHHHcCCcc
Confidence 666799999999964
No 112
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=97.51 E-value=0.00022 Score=68.21 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=56.5
Q ss_pred CCeEEEEEEEeeec--CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCce---EEEEccCCcchhhhhhcCCcc
Q 008580 262 GNVVVGGITYRPYV--SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLT---HFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 262 ~g~VIGGI~~R~f~--~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~---~~lt~AD~~AigFYkKqGFsk 336 (561)
.|++.|.|.++.-- .+-.+.+.-++|+|+||+.|+|+.||+.|++.... .+.. .++...+.-||+||||.||++
T Consensus 50 ~~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~-~~a~fvDLfVr~sN~iAI~mYkkLGY~~ 128 (173)
T KOG3234|consen 50 TGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDV-DNAYFVDLFVRVSNQIAIDMYKKLGYSV 128 (173)
T ss_pred CCceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHh-hhhheeeeeeeccchhHHHHHHhcCceE
Confidence 37899999886632 12236677799999999999999999999999876 3333 244455555999999999975
No 113
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.46 E-value=0.00065 Score=69.69 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=64.6
Q ss_pred CCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceE-EEEccCCc-chhhh
Q 008580 252 RSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTH-FLTYADNN-AVGYF 329 (561)
Q Consensus 252 ~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~-~lt~AD~~-AigFY 329 (561)
....++.+..+|+||.-.--.. .....++|.-+++.|+||||||++.|+..|.+-.-+ .|... ++.++||. |..-|
T Consensus 175 g~~~~~f~~~d~~iVa~A~t~a-~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~-eGk~~~L~~~~~N~~A~~iY 252 (268)
T COG3393 175 GRSRTYFLEGDGKIVAKAETAA-ENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLA-EGKIPCLFVNSDNPVARRIY 252 (268)
T ss_pred hceeEEEEccCCcEEEeeeccc-cCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHh-CCCeeEEEEecCCHHHHHHH
Confidence 3556666667789999664333 234568999999999999999999999999888877 55554 55567777 68899
Q ss_pred hhcCCcc
Q 008580 330 IKQGFTK 336 (561)
Q Consensus 330 kKqGFsk 336 (561)
+|-||..
T Consensus 253 ~riGF~~ 259 (268)
T COG3393 253 QRIGFRE 259 (268)
T ss_pred HHhCCee
Confidence 9999975
No 114
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.44 E-value=0.00057 Score=71.06 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=65.0
Q ss_pred EEEEEEC-CeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCC
Q 008580 256 SVMVIRG-NVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGF 334 (561)
Q Consensus 256 slvl~~~-g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGF 334 (561)
.+++..+ ++||+ |+-.+ .+ -|..+||++.+||-|+.-+|+.+|.+++.+ .|..|++.|+...-..||+-+||
T Consensus 38 ~v~~~~~~~~iia--cGsia--Gn--vikcvAvs~s~qGeGl~lkl~TeLin~ay~-~g~~hLFiyTKp~~~~lFk~~GF 110 (352)
T COG3053 38 FVAIYRDNEEIIA--CGSIA--GN--VIKCVAVSESLQGEGLALKLVTELINLAYE-RGRTHLFIYTKPEYAALFKQCGF 110 (352)
T ss_pred EEEEEcCCCcEEE--ecccc--cc--eeEEEEechhcccccHHHHHHHHHHHHHHH-cCCceEEEEechhHHHHHHhCCc
Confidence 3444444 88988 66555 32 577799999999999999999999999998 89999999999999999999999
Q ss_pred ccccccc
Q 008580 335 TKEIYLE 341 (561)
Q Consensus 335 sk~i~l~ 341 (561)
..-..++
T Consensus 111 ~~i~~~~ 117 (352)
T COG3053 111 SEIASAE 117 (352)
T ss_pred eEeeccC
Confidence 6544443
No 115
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=97.33 E-value=0.00049 Score=65.05 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=62.3
Q ss_pred EEEEE-CCeEEEEEEEeeecC-CceEE--EEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhc
Q 008580 257 VMVIR-GNVVVGGITYRPYVS-QKFGE--IAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (561)
Q Consensus 257 lvl~~-~g~VIGGI~~R~f~~-~~f~E--I~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKq 332 (561)
+.+.. +|++|+ |.|+.+. ..+.+ |--++|+++.||+|+|.+||....+.+.+.-.-+.+...|..+...||...
T Consensus 52 l~~~~~~g~LvA--yaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~~ 129 (155)
T COG2153 52 LLGWTPDGELVA--YARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYASF 129 (155)
T ss_pred EEEEcCCCeEEE--EEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHHh
Confidence 55555 899999 8888663 45556 666999999999999999999999999873223456677888889999999
Q ss_pred CCcc
Q 008580 333 GFTK 336 (561)
Q Consensus 333 GFsk 336 (561)
||.+
T Consensus 130 GFv~ 133 (155)
T COG2153 130 GFVR 133 (155)
T ss_pred CcEE
Confidence 9965
No 116
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.26 E-value=0.00028 Score=55.15 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=38.7
Q ss_pred EEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCC
Q 008580 285 CAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGF 334 (561)
Q Consensus 285 ~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGF 334 (561)
++|.+++||+|+|+.||+++.++++. .++. ....++.+|.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~-~g~~-----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARK-RGIS-----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHH-cCce-----ehHHHHHHHHhcCC
Confidence 89999999999999999999999997 5654 44567889999998
No 117
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.22 E-value=0.0015 Score=75.53 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=80.2
Q ss_pred CceEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEECC-eEEEEEEE--------------
Q 008580 207 GNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGN-VVVGGITY-------------- 271 (561)
Q Consensus 207 g~i~f~vv~nd~~~~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~~g-~VIGGI~~-------------- 271 (561)
|.++|.-+.....-..-..|..+=-|+..-=-+=..+=+.+|.=.++|+-+++..++ ++|+.+-.
T Consensus 423 ~~~~~~~~~~~~~~~~ee~Lr~~~gllV~AHYRnsP~DL~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~ 502 (758)
T COG1444 423 GSLEILEVDQRDLLFDEELLRQVYGLLVSAHYRNSPNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIW 502 (758)
T ss_pred cceeeeeccHHhhhhCHHHHHHHHhHHhhhhccCCHHHHHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHH
Confidence 889998888665443334444443344333322334445555544677777777776 55543310
Q ss_pred ----ee-----------------ecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE-cc-CCcchhh
Q 008580 272 ----RP-----------------YVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT-YA-DNNAVGY 328 (561)
Q Consensus 272 ----R~-----------------f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt-~A-D~~AigF 328 (561)
|+ |....=.=|+-+||+|++|++|||++||+++.+++++ ++-.+-+ |. +..=..|
T Consensus 503 ~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~~--~~DwlgvsFG~t~~L~rF 580 (758)
T COG1444 503 LGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIAVHPELQRMGIGSRLLALLIEEARK--GLDWLGVSFGYTEELLRF 580 (758)
T ss_pred hcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHhc--CCCEEeeccCCCHHHHHH
Confidence 11 1111115689999999999999999999999999973 4545434 32 2334779
Q ss_pred hhhcCCcc
Q 008580 329 FIKQGFTK 336 (561)
Q Consensus 329 YkKqGFsk 336 (561)
|.||||.-
T Consensus 581 W~rnGF~p 588 (758)
T COG1444 581 WLRNGFVP 588 (758)
T ss_pred HHHcCeEE
Confidence 99999953
No 118
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.15 E-value=0.0052 Score=57.06 Aligned_cols=103 Identities=15% Similarity=0.271 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHH
Q 008580 224 VWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNH 303 (561)
Q Consensus 224 ~~L~~lkniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~ 303 (561)
.-++.|..|+ |.-+.+++...+ +..+.-++...+++++|++-...- ...+++..++|.+--|++|+|..|++.
T Consensus 13 Qd~iDL~KIw----p~~~~~~l~~~l-~~~~~l~aArFNdRlLgAv~v~~~--~~~~~L~~l~VRevTRrRGVG~yLlee 85 (128)
T PF12568_consen 13 QDRIDLAKIW----PQQDPEQLEQWL-DEGHRLFAARFNDRLLGAVKVTIS--GQQAELSDLCVREVTRRRGVGLYLLEE 85 (128)
T ss_dssp HHHHHHHHH-----TTS-----------SSEEEEEEEETTEEEEEEEEEEE--TTEEEEEEEEE-TT-SSSSHHHHHHHH
T ss_pred HHHHHHHHhC----CCCCHHHHHHHh-ccCCeEEEEEechheeeeEEEEEc--CcceEEeeEEEeeccccccHHHHHHHH
Confidence 3456677777 777777775543 778888888999999998877654 667999999999999999999999988
Q ss_pred HHHHHHhhcCceEEEEccCC-cc------hhhhhhcCCcc
Q 008580 304 LKQHARDVDGLTHFLTYADN-NA------VGYFIKQGFTK 336 (561)
Q Consensus 304 Lke~ak~~~gi~~~lt~AD~-~A------igFYkKqGFsk 336 (561)
+...+ ..+.++..-.+. .+ -+|-..|||+.
T Consensus 86 ~~rq~---p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~ 122 (128)
T PF12568_consen 86 VLRQL---PDIKHWWLADEGVEPQDRAVMAAFMQACGFSA 122 (128)
T ss_dssp HHHHS----S--EEEE--TT-S--THHHHHHHHHHHT-EE
T ss_pred HHHHC---CCCcEEEEecCCCcccchHHHHHHHHHcCccc
Confidence 88776 456665443332 22 26999999954
No 119
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.15 E-value=0.021 Score=50.45 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=80.8
Q ss_pred HHHHHHcCceEEEEEeCCChhhHHHHHHHHHHHHhhh---C-CCCcHHHHHhhhhcC----CCcEEEEEECCeEEEEEEE
Q 008580 200 LKREEEAGNLKFVCLSNDGIDEHMVWLIGLKNIFARQ---L-PNMPKEYIVRLVMDR----SHKSVMVIRGNVVVGGITY 271 (561)
Q Consensus 200 ~~~ee~~g~i~f~vv~nd~~~~~~~~L~~lkniF~~q---L-P~MpkeYI~Rlv~D~----~h~slvl~~~g~VIGGI~~ 271 (561)
-+.-++.|.++|++++ ...+.-.++..+.+...++ . |..+.+|..+++-.. ...-+++..+|++||+...
T Consensus 11 ~r~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~ 88 (142)
T PF13480_consen 11 IRRAEKLGGVRFEVAT--DPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALG 88 (142)
T ss_pred HHHHHhcCCEEEEEeC--CHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEE
Confidence 3445567899999865 2233334445555666776 2 345668888776653 4444555668999998865
Q ss_pred eeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE
Q 008580 272 RPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (561)
Q Consensus 272 R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~ 317 (561)
-.. .+-+...+.++++++...|.|..|+-++.+.+.+ .|+..+
T Consensus 89 ~~~--~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~-~g~~~~ 131 (142)
T PF13480_consen 89 FRH--GGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIE-RGLRYF 131 (142)
T ss_pred EEE--CCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHH-CCCCEE
Confidence 433 6668888899999999999999999999999998 787655
No 120
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=97.07 E-value=0.0017 Score=62.42 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=73.4
Q ss_pred hCCCCcHHHHHhhhhc----CCCcEEEEE-ECCeEEEEEEEeeec----CCceEEEEEEEeccCCcccChHHHHHHHHHH
Q 008580 236 QLPNMPKEYIVRLVMD----RSHKSVMVI-RGNVVVGGITYRPYV----SQKFGEIAFCAITADEQVKGYGTRLMNHLKQ 306 (561)
Q Consensus 236 qLP~MpkeYI~Rlv~D----~~h~slvl~-~~g~VIGGI~~R~f~----~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke 306 (561)
-|-+.|.+|..+--+- -...++|.. .+|+|||++-..++. ......|..+||.-.||+.|+|++||+....
T Consensus 19 Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~r 98 (193)
T KOG3235|consen 19 NLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASR 98 (193)
T ss_pred ccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHH
Confidence 3555677776554322 245677777 458999999988876 3345799999999999999999999999766
Q ss_pred HHHhhcCce---EEEEccCCcchhhhh-hcCCc
Q 008580 307 HARDVDGLT---HFLTYADNNAVGYFI-KQGFT 335 (561)
Q Consensus 307 ~ak~~~gi~---~~lt~AD~~AigFYk-KqGFs 335 (561)
...+..+.. ..+.-.+-.|+++|+ --||.
T Consensus 99 Am~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~ 131 (193)
T KOG3235|consen 99 AMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFV 131 (193)
T ss_pred HHHHhhcceEEEEeeecccHHHHHhhhhccceE
Confidence 655544444 345566666899999 88995
No 121
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=96.98 E-value=0.0014 Score=63.56 Aligned_cols=103 Identities=25% Similarity=0.349 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHhhhCCCC--cHHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCceEE----EEEEEeccCCcc
Q 008580 220 DEHMVWLIGLKNIFARQLPNM--PKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKFGE----IAFCAITADEQV 293 (561)
Q Consensus 220 ~~~~~~L~~lkniF~~qLP~M--pkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f~E----I~f~AV~~~~Qg 293 (561)
..+.-||..+. ++.|.. |..++... .-+++..+|++||.|.+|...+..+.+ |= ..|.|.+||
T Consensus 43 ~~fed~L~~~~----~~~~~~~~~~g~V~~~------~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~ 111 (174)
T COG3981 43 EDFEDWLEDLT----RQEPGNNLPEGWVPAS------TYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERR 111 (174)
T ss_pred ccHHHHHHHHh----ccCCCcCCCCCceece------eEEEEecCCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhc
Confidence 45566776643 344433 44555554 225555579999999988755443322 33 589999999
Q ss_pred cChHHHHHHHHHHHHHhhcCceEEEEccC--Ccc-hhhhhhcCC
Q 008580 294 KGYGTRLMNHLKQHARDVDGLTHFLTYAD--NNA-VGYFIKQGF 334 (561)
Q Consensus 294 KGyGt~Lmn~Lke~ak~~~gi~~~lt~AD--~~A-igFYkKqGF 334 (561)
||||+.++....++||. .|+..+++.+| |.| ..--+++|=
T Consensus 112 KGYA~emLkl~L~~ar~-lgi~~Vlvtcd~dN~ASrkvI~~NGG 154 (174)
T COG3981 112 KGYAKEMLKLALEKARE-LGIKKVLVTCDKDNIASRKVIEANGG 154 (174)
T ss_pred cCHHHHHHHHHHHHHHH-cCCCeEEEEeCCCCchhhHHHHhcCC
Confidence 99999999999999998 99998877665 444 446677774
No 122
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=95.99 E-value=0.023 Score=60.77 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEECCeEEEEEEEee---ecCC---ceEEEEEEEeccCCcccCh
Q 008580 223 MVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRP---YVSQ---KFGEIAFCAITADEQVKGY 296 (561)
Q Consensus 223 ~~~L~~lkniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~---f~~~---~f~EI~f~AV~~~~QgKGy 296 (561)
...|.-+-+.|.+-|-.=.+.+..+++-.++. +|+..+.++.++...-+ |+.. .-+.|+++|+.|+|||+|+
T Consensus 10 kE~i~~~s~~~~k~~~~~~~~~f~kil~~~n~--~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~ 87 (389)
T COG4552 10 KEFIGLESYAFWKPLVPTDGAVFVKILAEPNS--YVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGA 87 (389)
T ss_pred HHHHhHHHHHhcCccccchhhhhhhhccCCcc--eEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcH
Confidence 34455566777777654445666666555554 56777788888886443 3322 2367999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCcc
Q 008580 297 GTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 297 Gt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk 336 (561)
-+.||.|.....++ +|+.-.+.+ -...+||+|.||..
T Consensus 88 ~~~Ll~~sLre~~~-kG~p~s~L~--P~s~~iYrKfGye~ 124 (389)
T COG4552 88 LRALLAHSLREIAR-KGYPVSALH--PFSGGIYRKFGYEY 124 (389)
T ss_pred HHHHHHHHHHHHHH-cCCeeEEec--cCchhhHhhccccc
Confidence 99999999888887 787765555 34578999999954
No 123
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=95.89 E-value=0.019 Score=54.82 Aligned_cols=104 Identities=22% Similarity=0.362 Sum_probs=69.6
Q ss_pred HHHcCceEEEEEeCC--Ch-hhHHHHHHHHHHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeecCCce
Q 008580 203 EEEAGNLKFVCLSND--GI-DEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYVSQKF 279 (561)
Q Consensus 203 ee~~g~i~f~vv~nd--~~-~~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~~~~f 279 (561)
.|+...+.|.|+.|. .. .......+|=-|+|=.++|.-. + . .+.-++|
T Consensus 58 ~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt~~~~~~-----------n-~-----s~~~~~g------------ 108 (185)
T KOG4135|consen 58 REDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLTTSPDTE-----------N-P-----SDDVITG------------ 108 (185)
T ss_pred ccCCcceEEEEEechhcccCchhHhhhccceeeEEecCCCcC-----------C-c-----ccceeee------------
Confidence 456778888888443 22 2355566777777777776422 0 0 1112223
Q ss_pred EEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEc--cC-CcchhhhhhcCCcc
Q 008580 280 GEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTY--AD-NNAVGYFIKQGFTK 336 (561)
Q Consensus 280 ~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~--AD-~~AigFYkKqGFsk 336 (561)
|+..+.-.|.-||||||+..|..+..|+....++..+..- .| ...+.||+|.+|+.
T Consensus 109 -E~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q 167 (185)
T KOG4135|consen 109 -EVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQ 167 (185)
T ss_pred -eEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhhee
Confidence 4444668899999999999999999999875555544432 23 44689999999976
No 124
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.86 E-value=0.026 Score=50.29 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=50.0
Q ss_pred CCcEEEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEc
Q 008580 253 SHKSVMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTY 320 (561)
Q Consensus 253 ~h~slvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~ 320 (561)
....+++..+|+++|.++|..-. .+-+-|.---|++.+||||+|..|+.+..+++|+ .+.+.+=++
T Consensus 14 ~~~~y~~~~~G~~~~e~~y~~~~-~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~-~g~kiiP~C 79 (99)
T COG2388 14 ENGRYVLTDEGEVIGEATYYDRG-ENLIIIDHTYVPDELRGQGIAQKLVEKALEEARE-AGLKIIPLC 79 (99)
T ss_pred CceEEEEecCCcEEEEEEEecCC-CCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHH-cCCeEcccc
Confidence 44556677789999998875432 2335555578999999999999999999999998 676655333
No 125
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=95.58 E-value=0.22 Score=49.60 Aligned_cols=143 Identities=14% Similarity=0.170 Sum_probs=92.8
Q ss_pred EEEEEeCCChhhHHHHHHHH----HHHHhhhCC-CCcH-HHHHhhhhcCCCcEEEE-E-ECCeEEEEEEEeeec------
Q 008580 210 KFVCLSNDGIDEHMVWLIGL----KNIFARQLP-NMPK-EYIVRLVMDRSHKSVMV-I-RGNVVVGGITYRPYV------ 275 (561)
Q Consensus 210 ~f~vv~nd~~~~~~~~L~~l----kniF~~qLP-~Mpk-eYI~Rlv~D~~h~slvl-~-~~g~VIGGI~~R~f~------ 275 (561)
++++|+.+.....-.+|.++ +.+|..+|- ..|. +=+.+=-||..+-.+++ . .+|+|||+ +|+.+
T Consensus 2 ~~~~v~~~~~~~~~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~--~RLlptt~p~m 79 (207)
T PRK13834 2 RILAISPDQYEREASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGC--ARLLPAIGPTM 79 (207)
T ss_pred eEEEEeCchhhcCHHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEE--EecccCCCcch
Confidence 56777666543333333333 578887662 1221 11233447765444443 3 35899994 44322
Q ss_pred ----------------CCceEEEEEEEeccCCc-ccC------hHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhc
Q 008580 276 ----------------SQKFGEIAFCAITADEQ-VKG------YGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQ 332 (561)
Q Consensus 276 ----------------~~~f~EI~f~AV~~~~Q-gKG------yGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKq 332 (561)
....+|+--+||++.++ .+| +...|+..+.+++.. .|+.++++-.+-.-...|++.
T Consensus 80 l~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~-~Gi~~~~~v~~~~~~r~l~r~ 158 (207)
T PRK13834 80 LAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMA-NGYTEIVTATDLRFERILARA 158 (207)
T ss_pred hhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHHHc
Confidence 23568999999998753 222 446799999999998 999999887777666789999
Q ss_pred CCccccccccceeeeeeecCCCceeEeeee
Q 008580 333 GFTKEIYLEKDRWQGYIKDYDGGILMECKI 362 (561)
Q Consensus 333 GFsk~i~l~~~~w~G~IKdYegatLM~C~l 362 (561)
||.- ...|.-+.++|...+-|.+
T Consensus 159 G~~~-------~~lG~~~~~g~~~~~a~~i 181 (207)
T PRK13834 159 GWPM-------QRLGEPKAIGNTMAVAGIL 181 (207)
T ss_pred CCCe-------EECCCCEEECCeEEEEEEE
Confidence 9964 4466666777877777776
No 126
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.11 E-value=0.039 Score=51.55 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 008580 491 PMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSGLHS 555 (561)
Q Consensus 491 PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~yk~A~~Lek~Fe~~lkeil~~ 555 (561)
|-||.-+++||+.|. |+++.+|..||-.|+.-++.=.+...+.-+.-..+..+|.+.+...+.-
T Consensus 59 p~dL~~V~kkl~~G~-Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~W 122 (131)
T cd05493 59 PLDLEAVGKKLEAGF-YTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPW 122 (131)
T ss_pred cccHHHHHHHHhccc-eehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccc
Confidence 889999999999985 8999999999999999887766555566665566778888888877764
No 127
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=95.04 E-value=0.29 Score=49.77 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=82.5
Q ss_pred HHHHhhhCCCC-cH---HHHHhhhhcCCCcEEEEEE--CCeEEEEEEEeeecC---------------------------
Q 008580 230 KNIFARQLPNM-PK---EYIVRLVMDRSHKSVMVIR--GNVVVGGITYRPYVS--------------------------- 276 (561)
Q Consensus 230 kniF~~qLP~M-pk---eYI~Rlv~D~~h~slvl~~--~g~VIGGI~~R~f~~--------------------------- 276 (561)
+.||-.++-=- |. +-..+--||....-+++.. +|+|||++ |+.+.
T Consensus 27 ~~VFv~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~--RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~ 104 (241)
T TIGR03694 27 YQVYCEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCV--RLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPR 104 (241)
T ss_pred HHHHHHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEE--EEeccccccccccccHHHHhccccchhhcCcc
Confidence 67887766211 11 3344455777555555554 48999954 44321
Q ss_pred ----CceEEEEEEEeccCCccc--------Ch--------------------HHHHHHHHHHHHHhhcCceEEEEccCCc
Q 008580 277 ----QKFGEIAFCAITADEQVK--------GY--------------------GTRLMNHLKQHARDVDGLTHFLTYADNN 324 (561)
Q Consensus 277 ----~~f~EI~f~AV~~~~QgK--------Gy--------------------Gt~Lmn~Lke~ak~~~gi~~~lt~AD~~ 324 (561)
...+|+--+||.+++|+. |+ ...|+..+.+++.+ .|+.++++-..-.
T Consensus 105 ~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~-~Gi~~~~~v~~~~ 183 (241)
T TIGR03694 105 RLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSA-NGITHWYAIMEPR 183 (241)
T ss_pred ccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHH-CCCcEEEEEeCHH
Confidence 246889889999999874 33 35689999999998 9999999888777
Q ss_pred chhhhhhcCCccccccccceeeeeeecCCCceeEeee
Q 008580 325 AVGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECK 361 (561)
Q Consensus 325 AigFYkKqGFsk~i~l~~~~w~G~IKdYegatLM~C~ 361 (561)
-...+++.|+.- ...|--.+|.|.. +=|.
T Consensus 184 l~r~l~r~G~~~-------~~lG~~~~~~G~r-~p~~ 212 (241)
T TIGR03694 184 LARLLSRFGIQF-------RQVGPPVDYHGLR-APYY 212 (241)
T ss_pred HHHHHHHhCCce-------EEcCCCeeECcEe-ccee
Confidence 777999999954 3456666676643 4444
No 128
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=94.44 E-value=0.024 Score=54.53 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=42.8
Q ss_pred EEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCcc
Q 008580 280 GEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 280 ~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk 336 (561)
+-|..+||.++||.+|+|+.|+..-.++.-+..-+...+.-+-..-+.||+..||..
T Consensus 102 i~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr~gFk~ 158 (190)
T KOG4144|consen 102 IHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYERFGFKA 158 (190)
T ss_pred eeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHhcCcee
Confidence 778889999999999999999877555544312223455556677799999999953
No 129
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=94.44 E-value=0.37 Score=47.14 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=78.8
Q ss_pred HHHHhhhCCCCcH--HHHHhhhhcCCCcEEE-EEECCeEEEEEEEeeecC----------------------CceEEEEE
Q 008580 230 KNIFARQLPNMPK--EYIVRLVMDRSHKSVM-VIRGNVVVGGITYRPYVS----------------------QKFGEIAF 284 (561)
Q Consensus 230 kniF~~qLP~Mpk--eYI~Rlv~D~~h~slv-l~~~g~VIGGI~~R~f~~----------------------~~f~EI~f 284 (561)
+.+|..+|-=-.. +=.+.=-||...-.++ ...+|+|+|++ |+.+. ....|+--
T Consensus 18 ~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~--RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SR 95 (182)
T PF00765_consen 18 HRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCA--RLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSR 95 (182)
T ss_dssp HHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEE--EEEETTS--HHHHCTGGGHTTS---SSTTEEEEEE
T ss_pred HHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEe--eeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeE
Confidence 5677766521111 1122233666544444 45679999955 44322 34599999
Q ss_pred EEeccCCcc------cChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCccccccccceeeeeeecCCCceeE
Q 008580 285 CAITADEQV------KGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILM 358 (561)
Q Consensus 285 ~AV~~~~Qg------KGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk~i~l~~~~w~G~IKdYegatLM 358 (561)
|||+++... .-+...|+..+.++|.+ .|+.++++-.+-.-..+|++.||.- ...|.-..++|..++
T Consensus 96 f~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~-~gi~~~v~V~~~~~~r~l~r~G~~~-------~~lG~~~~~~~~~~~ 167 (182)
T PF00765_consen 96 FCVDPDRRRSRAGSRSPVTMELLLGMVEFALS-NGIRHIVGVVDPAMERILRRAGWPV-------RRLGPPRSIGGERVV 167 (182)
T ss_dssp EEE-HCCCHHCHSCC-THHHHHHHHHHHHHHC-TT-SEEEEEEEHHHHHHHHHCT-EE-------EESSEEEEETTEEEE
T ss_pred EEEcccccccccccccHHHHHHHHHHHHHHHH-CCCCEEEEEEChHHHHHHHHcCCce-------EECCCCeeeCCeEEE
Confidence 999988432 23567899999999998 9999999988877788999999954 345555556676777
Q ss_pred eeee
Q 008580 359 ECKI 362 (561)
Q Consensus 359 ~C~l 362 (561)
-|.+
T Consensus 168 a~~i 171 (182)
T PF00765_consen 168 ALLI 171 (182)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 130
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=93.85 E-value=1.4 Score=43.52 Aligned_cols=119 Identities=12% Similarity=0.164 Sum_probs=69.5
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhCCCCcH-HH-HHhhhhcC-CCcEEEEEEC-CeEEEEEEEeeec------CCceE
Q 008580 211 FVCLSNDGIDEHMVWLIGLKNIFARQLPNMPK-EY-IVRLVMDR-SHKSVMVIRG-NVVVGGITYRPYV------SQKFG 280 (561)
Q Consensus 211 f~vv~nd~~~~~~~~L~~lkniF~~qLP~Mpk-eY-I~Rlv~D~-~h~slvl~~~-g~VIGGI~~R~f~------~~~f~ 280 (561)
|.+|.|-.... +.++..+...+=...-+ +| +-+--|+. -+..+++.++ .+||++...-.|. +..+.
T Consensus 4 vdvv~NP~~e~----~d~fmk~~g~~r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~ 79 (181)
T PF06852_consen 4 VDVVINPPQEY----FDQFMKLHGNERWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQ 79 (181)
T ss_pred eEEEeCCCHHH----HHHHHHHhcCCcccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeE
Confidence 66788876542 22222222333222222 22 23444565 5556666665 6799988654443 23488
Q ss_pred EEEEEEeccCCcccChHHHHHHHH-HHHHHhhcCceEEEEccCCcchhhhhh-cCCcc
Q 008580 281 EIAFCAITADEQVKGYGTRLMNHL-KQHARDVDGLTHFLTYADNNAVGYFIK-QGFTK 336 (561)
Q Consensus 281 EI~f~AV~~~~QgKGyGt~Lmn~L-ke~ak~~~gi~~~lt~AD~~AigFYkK-qGFsk 336 (561)
-|-|.++.|+|||+|+++ |+..+ ++..+. .+- ..+.+....+..||+| +||.+
T Consensus 80 ~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~-N~~~~~~~~~~~~w~k~~G~~~ 134 (181)
T PF06852_consen 80 FIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDD-NSVAQGNVKMSNFWHKMFGFDD 134 (181)
T ss_pred EEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCC-ceeeecCHHHHHHHHHHhCCCC
Confidence 899999999999999996 55544 455443 232 3444555566677666 68765
No 131
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=93.49 E-value=0.07 Score=58.88 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=42.8
Q ss_pred cCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCcc
Q 008580 289 ADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 289 ~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk 336 (561)
-.+|-+|||+.||.+.+..|++ .+...+++-..--+..||+|.||..
T Consensus 460 ~~~QH~G~G~~L~~~AE~ia~e-e~~~ki~viSgiG~ReYy~k~GY~~ 506 (515)
T COG1243 460 DEWQHRGYGRELLEEAERIARE-EGAKKILVISGIGVREYYRKLGYEL 506 (515)
T ss_pred chhhcccHHHHHHHHHHHHHHh-hccccEEEEecccHHHHHHHhCccc
Confidence 5789999999999999999998 6788888888888999999999965
No 132
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=91.97 E-value=0.56 Score=45.39 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=52.2
Q ss_pred cHHHHHhhhhcCCC---cEEEE--EECCeEEEEEEEee-----ec-CCceEEEEEEEeccCCcccChHHHHHHHHHHHHH
Q 008580 241 PKEYIVRLVMDRSH---KSVMV--IRGNVVVGGITYRP-----YV-SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHAR 309 (561)
Q Consensus 241 pkeYI~Rlv~D~~h---~slvl--~~~g~VIGGI~~R~-----f~-~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak 309 (561)
.+++|...+--+.+ ..+.+ ...+++||+|+.-+ +. ...-+||.|+||....|.|++.--|++++...+.
T Consensus 61 S~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn 140 (162)
T PF01233_consen 61 SKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVN 140 (162)
T ss_dssp -HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhh
Confidence 45666655554422 22333 33689999997544 21 2356999999999999999999999999999988
Q ss_pred hhcCceEEE
Q 008580 310 DVDGLTHFL 318 (561)
Q Consensus 310 ~~~gi~~~l 318 (561)
. .||..-+
T Consensus 141 ~-~gI~qAv 148 (162)
T PF01233_consen 141 L-QGIWQAV 148 (162)
T ss_dssp T-TT--EEE
T ss_pred h-cCceeee
Confidence 6 7876543
No 133
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=91.24 E-value=1 Score=40.16 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=28.7
Q ss_pred CceEEEEEEEeccCCcccChHHHHHHHHHHHH
Q 008580 277 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHA 308 (561)
Q Consensus 277 ~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~a 308 (561)
.....+.-|||.+..|+.|+|..|++.|++..
T Consensus 32 ~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 32 NGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 47789999999999999999999999988764
No 134
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=90.26 E-value=1.3 Score=39.61 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=28.2
Q ss_pred ceEEEEEEEeccCCcccChHHHHHHHHHHHH
Q 008580 278 KFGEIAFCAITADEQVKGYGTRLMNHLKQHA 308 (561)
Q Consensus 278 ~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~a 308 (561)
+...+.-|||.+..||.|+|..|++.|++..
T Consensus 33 ~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 33 GVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred CceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 6788889999999999999999999998764
No 135
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=90.15 E-value=1.4 Score=41.18 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=54.7
Q ss_pred CCCcEEEEEECCeEEEEEEEe--eec----CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEcc-CCc
Q 008580 252 RSHKSVMVIRGNVVVGGITYR--PYV----SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYA-DNN 324 (561)
Q Consensus 252 ~~h~slvl~~~g~VIGGI~~R--~f~----~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~A-D~~ 324 (561)
+.-..+.+.-+|.+||.|..- ++. +++-.| +-+-..||++|+|++..+.+-..++ ++..+.+.- +..
T Consensus 35 ~~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~e---fFIi~k~~~~GvGR~aaK~If~~~~---g~w~Va~i~EN~P 108 (143)
T COG5628 35 PVREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAE---FFIVRKHRRRGVGRAAAKAIFGSAW---GVWQVATVRENTP 108 (143)
T ss_pred cccceeEEEECCceeeeeeeecccCCCCcccccchh---eEeeehhhccchhHHHHHHHHHHhh---ceEEEEEeccCCh
Confidence 344556667788999998532 221 122233 4466799999999998888877654 566665544 566
Q ss_pred chhhhhhcCCccccc
Q 008580 325 AVGYFIKQGFTKEIY 339 (561)
Q Consensus 325 AigFYkKqGFsk~i~ 339 (561)
|+.||||--.+..+.
T Consensus 109 A~~fwK~~~~t~~i~ 123 (143)
T COG5628 109 ARAFWKRVAETYPVV 123 (143)
T ss_pred hHHHHHhhhcccccc
Confidence 999999977755333
No 136
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=89.60 E-value=6.6 Score=41.05 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=70.1
Q ss_pred HHHHHHcCceEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCcHHHHHhhhhc--CCCcEEEEE-ECCeEEEEEEEeeecC
Q 008580 200 LKREEEAGNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMD--RSHKSVMVI-RGNVVVGGITYRPYVS 276 (561)
Q Consensus 200 ~~~ee~~g~i~f~vv~nd~~~~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D--~~h~slvl~-~~g~VIGGI~~R~f~~ 276 (561)
.++-++.| ++++. ..+ .+.+..++. ++.=....|-.|++|+.+++-. .+..-+++. .+|++||++.+-.+
T Consensus 144 IRka~k~G-v~v~~-~~~-l~~F~~l~~--~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~-- 216 (330)
T TIGR03019 144 VRKGIKAG-LTVTV-DGD-LDRFYDVYA--ENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSFYF-- 216 (330)
T ss_pred HHHHHHCC-eEEEE-CCc-HHHHHHHHH--HHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEEEe--
Confidence 44556677 55553 222 333333222 2223456687889999887532 222223344 57899998765444
Q ss_pred CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE
Q 008580 277 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (561)
Q Consensus 277 ~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~ 317 (561)
.+.+...+.+..++++..+-+..|+-++.++|++ .|+..+
T Consensus 217 ~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~-~G~~~f 256 (330)
T TIGR03019 217 RDEVLPYYAGGLREARDVAANDLMYWELMRRACE-RGLRVF 256 (330)
T ss_pred CCEEEEEeccChHHHHhhChHHHHHHHHHHHHHH-CCCcEE
Confidence 4445544667788899999999999999999998 787765
No 137
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=89.41 E-value=0.62 Score=40.96 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=52.5
Q ss_pred CCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccCCcchhhhhhcCCc
Q 008580 262 GNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YADNNAVGYFIKQGFT 335 (561)
Q Consensus 262 ~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD~~AigFYkKqGFs 335 (561)
+|..|-=+.. .++.|+.--..-|+|||||+.+.++.++.+++.+ .|+--..- ..+.......++.||.
T Consensus 7 eG~PVSW~lm-----dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~-~g~P~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 7 EGNPVSWSLM-----DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHK-LGFPFYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred CCCEeEEEEe-----cccccccccccCHhHhcCCHHHHHHHHHHHHHHH-CCCCeEeehHhccHHHHHHHHHCCCe
Confidence 4666663332 4458999999999999999999999999999998 77764433 3334468899999994
No 138
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=89.02 E-value=0.36 Score=51.83 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=40.3
Q ss_pred cCCcccChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCcc
Q 008580 289 ADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTK 336 (561)
Q Consensus 289 ~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk 336 (561)
..||-+|||+.||.+.+..||+.++-..+-+-..--...||+|.||+-
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~L 544 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYEL 544 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeee
Confidence 469999999999999999999877776666666666778999999954
No 139
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.47 E-value=2.6 Score=47.39 Aligned_cols=125 Identities=16% Similarity=0.200 Sum_probs=93.1
Q ss_pred ceEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEE-----CCeEEEEEEEeeecCCceEE
Q 008580 208 NLKFVCLSNDGI-DEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIR-----GNVVVGGITYRPYVSQKFGE 281 (561)
Q Consensus 208 ~i~f~vv~nd~~-~~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~-----~g~VIGGI~~R~f~~~~f~E 281 (561)
+|+..+=.+|.. ......|++=-|-|--.--+.-.+-+.++.-|++...+.+-- ++.+||.+.+.- ..+..+
T Consensus 411 em~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~k--k~~~w~ 488 (574)
T COG3882 411 EMRLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEK--KESEWF 488 (574)
T ss_pred eEEEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEe--cCCeEE
Confidence 456666667753 355666777777777666667788888988888887777632 357999776553 356788
Q ss_pred EEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEEcc-----CCcchhhhhhcCCc
Q 008580 282 IAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYA-----DNNAVGYFIKQGFT 335 (561)
Q Consensus 282 I~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt~A-----D~~AigFYkKqGFs 335 (561)
|..+..+-.--|+++-++||+.+++.|+. .|+..+-+|- +..-..||+.+||.
T Consensus 489 IDt~lmSCRVlgRkvE~~l~~~~~e~A~~-~gi~tir~~Y~pt~kN~pv~~FyE~mgf~ 546 (574)
T COG3882 489 IDTFLMSCRVLGRKVEQRLMNSLEEQALS-EGINTIRGYYIPTEKNAPVSDFYERMGFK 546 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcceeeeEecccccCCcHHHHHHHhccc
Confidence 88888888888999999999999999998 7887765532 22346699999996
No 140
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=86.70 E-value=0.81 Score=38.58 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.3
Q ss_pred EEEEEEEeccCCcccChHHHHHHHHHHHH
Q 008580 280 GEIAFCAITADEQVKGYGTRLMNHLKQHA 308 (561)
Q Consensus 280 ~EI~f~AV~~~~QgKGyGt~Lmn~Lke~a 308 (561)
.-|.-+||.+.+|+|||+++||+.+.+..
T Consensus 6 ~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 6 CGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 45777999999999999999999987764
No 141
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=86.13 E-value=2.2 Score=43.42 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=52.1
Q ss_pred cChHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCccccccccceeeeeeecCCCceeEeeeeCCC
Q 008580 294 KGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPK 365 (561)
Q Consensus 294 KGyGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk~i~l~~~~w~G~IKdYegatLM~C~l~p~ 365 (561)
.|-...|+..|.+.|++ +|+..++.+....+...|.++||..+..+| ||-.. ++|.+|...+.+.
T Consensus 20 ~~~~~~~~~~~~~~a~~-~~~~ki~~~~~~~~~~~~~~~g~~~e~~i~-----~~f~g-~~~~~~~~~~~~~ 84 (266)
T TIGR03827 20 GNDVEALIPDLDALAKK-EGYTKIIAKVPGSDKPLFEERGYLEEAKIP-----GYFNG-HDAYFMSKYLDED 84 (266)
T ss_pred CccHHHHHHHHHHHHHH-cCCcEEEEEccHHHHHHHHHCCCeEEEecc-----cccCC-CceEEEEEcCchH
Confidence 34578899999999998 999999999999999999999998744444 22222 7888998877764
No 142
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=84.16 E-value=0.6 Score=54.80 Aligned_cols=61 Identities=25% Similarity=0.372 Sum_probs=51.3
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 008580 488 IKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKV 549 (561)
Q Consensus 488 Ik~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~yk~A~~Lek~Fe~~l 549 (561)
-.-|..|..|..||++ .||++.+.|..|+..|..|+.+|.+.+-.+...+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn-~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLEN-NYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHh-hhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 3457889999999998 589999999999999999999999988777666677777766544
No 143
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=80.40 E-value=1.1 Score=51.96 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=28.1
Q ss_pred EEEEEEEeccCCcccChHHHHHHHHHHHHH
Q 008580 280 GEIAFCAITADEQVKGYGTRLMNHLKQHAR 309 (561)
Q Consensus 280 ~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak 309 (561)
+-|+-+||.|+||++|||++-++-|.+|.-
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 679999999999999999999999999875
No 144
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.05 E-value=28 Score=35.23 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=82.6
Q ss_pred HHHHhhhC----CCCcHHHHHhhhhcCCCcEEEEE--ECCeEEEEEEEeeecCC----------------------ceEE
Q 008580 230 KNIFARQL----PNMPKEYIVRLVMDRSHKSVMVI--RGNVVVGGITYRPYVSQ----------------------KFGE 281 (561)
Q Consensus 230 kniF~~qL----P~MpkeYI~Rlv~D~~h~slvl~--~~g~VIGGI~~R~f~~~----------------------~f~E 281 (561)
+.||..+| +--+. .+.-=||..+..+++. .+|+|+| |.|+.+.. ++.|
T Consensus 25 ~~vF~erL~W~v~~~~g--~E~DqyD~~~t~Yll~~~~~g~I~G--~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwE 100 (209)
T COG3916 25 YQVFKERLGWDVVCIDG--FEIDQYDNLDTVYLLALTSDGRIVG--CVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWE 100 (209)
T ss_pred HHHHHHhcCCceeccCC--ccccccCCCCceEEEEEcCCCcEEE--EEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEE
Confidence 56777776 22222 3344467655555544 5699999 55544322 4578
Q ss_pred EEEEEeccCCcccC------hHHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCccccccccceeeeeeecCCCc
Q 008580 282 IAFCAITADEQVKG------YGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGG 355 (561)
Q Consensus 282 I~f~AV~~~~QgKG------yGt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk~i~l~~~~w~G~IKdYega 355 (561)
.--|||+..-..++ .+..||.-+.+++++ .|+++++|-.+-.=...++..||.- ...|.-..+.+.
T Consensus 101 sSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~-~G~~~IvtVt~~~meril~r~Gw~~-------~riG~~~~ig~~ 172 (209)
T COG3916 101 SSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALA-RGITGIVTVTDTGMERILRRAGWPL-------TRIGPPLTIGNE 172 (209)
T ss_pred EeeeeeccccchhhcCCccHHHHHHHHHHHHHHHH-cCCceEEEEEchHHHHHHHHcCCCe-------EEcCCceeeCCe
Confidence 87789997323332 356789999999998 9999999999999999999999954 335655556666
Q ss_pred eeEeeeeC
Q 008580 356 ILMECKID 363 (561)
Q Consensus 356 tLM~C~l~ 363 (561)
...-|.|.
T Consensus 173 ~~VA~~l~ 180 (209)
T COG3916 173 RAVALLLD 180 (209)
T ss_pred eEEEEEee
Confidence 66666653
No 145
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=76.40 E-value=12 Score=34.73 Aligned_cols=45 Identities=27% Similarity=0.483 Sum_probs=30.8
Q ss_pred CeEEEEEE---Eeeec---CCceEEE------EEEEeccCCcccChHHHHHHHHHHH
Q 008580 263 NVVVGGIT---YRPYV---SQKFGEI------AFCAITADEQVKGYGTRLMNHLKQH 307 (561)
Q Consensus 263 g~VIGGI~---~R~f~---~~~f~EI------~f~AV~~~~QgKGyGt~Lmn~Lke~ 307 (561)
|.|||.+- =++|. .....|| .=+-|.+..|++|+|++|.+++.+.
T Consensus 18 g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~ 74 (120)
T PF05301_consen 18 GAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQE 74 (120)
T ss_pred ceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHH
Confidence 56888872 12232 2333443 3357999999999999999988765
No 146
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=71.47 E-value=26 Score=36.12 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhhC-CCCcHHHHHhhhhcCCCcEEEE--EE-CCeEEEEEEEee-ecCCc-eEEEEEEEeccCCcccCh
Q 008580 223 MVWLIGLKNIFARQL-PNMPKEYIVRLVMDRSHKSVMV--IR-GNVVVGGITYRP-YVSQK-FGEIAFCAITADEQVKGY 296 (561)
Q Consensus 223 ~~~L~~lkniF~~qL-P~MpkeYI~Rlv~D~~h~slvl--~~-~g~VIGGI~~R~-f~~~~-f~EI~f~AV~~~~QgKGy 296 (561)
...+...+....-+- -..|++.|.-+.+ |-++|+ .. +|++||.....+ +..+. +..-.+++|.+++++.|+
T Consensus 15 ~~~~dV~~~aWg~~d~~~~~~d~i~al~~---~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~e~~k~sgl 91 (266)
T COG3375 15 DEAEDVQASAWGSEDRDGAPADTIRALRY---HGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVREEVKGSGL 91 (266)
T ss_pred HHHHHHHHHHhCccccccchHHHHHHHHh---cCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhccccccccch
Confidence 334444444444333 3347788876644 344443 44 469999887665 43444 566777999999999999
Q ss_pred HHHHHHHHHHHHHhhcCceEE-EEccCCcchh---hhhhcCCccccccccceeeeeeecCC
Q 008580 297 GTRLMNHLKQHARDVDGLTHF-LTYADNNAVG---YFIKQGFTKEIYLEKDRWQGYIKDYD 353 (561)
Q Consensus 297 Gt~Lmn~Lke~ak~~~gi~~~-lt~AD~~Aig---FYkKqGFsk~i~l~~~~w~G~IKdYe 353 (561)
|-.|-..=.+.++. .|+..+ .||.--+|+. =+-|.|= ...-|||||=
T Consensus 92 g~aLK~~Qre~a~~-~G~tli~WTfDPl~alNA~fNi~KLGa---------~artYi~nfY 142 (266)
T COG3375 92 GVALKMKQRERALS-MGYTLIAWTFDPLNALNARFNISKLGA---------IARTYIKNFY 142 (266)
T ss_pred hhhhHHHHHHHHHh-cCeeeEEEecccchhhhhhcchhhhce---------eEEEeecccc
Confidence 99987777788887 788765 5665555655 2345554 2357888884
No 147
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=68.06 E-value=2.8 Score=50.95 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=55.3
Q ss_pred CCCCCCcCCCCCCC-----CCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHH--HHHHHHHHHhhhCCCC
Q 008580 467 VDAWPFKEPVDARD-----VPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVA--DVKRMFANARTYNSPD 531 (561)
Q Consensus 467 ~~A~pF~~PVd~~e-----vPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~a--DvrLIF~Ncr~YN~pd 531 (561)
..+-.|..|++... +++|-.+|+.+||+...-.++.... |.++.+|.. ++.|||.|+..||+..
T Consensus 531 R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~-~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 531 RSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHL-KLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHh-HHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 33566888887542 5689999999999999999999987 679999999 9999999999999976
No 148
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=67.59 E-value=1.7 Score=38.76 Aligned_cols=11 Identities=18% Similarity=0.284 Sum_probs=2.8
Q ss_pred Ccccchhhhhh
Q 008580 109 DSSMRTFTAAR 119 (561)
Q Consensus 109 ~~~~~~~~~~~ 119 (561)
+-..-+|+.++
T Consensus 40 e~p~p~fgea~ 50 (101)
T PF09026_consen 40 EVPVPEFGEAM 50 (101)
T ss_dssp ------HHHHH
T ss_pred cccchhHHHHH
Confidence 34566666554
No 149
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=66.37 E-value=21 Score=34.08 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=49.3
Q ss_pred CceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE--ccC--Ccc-hhhhhhcCCcc
Q 008580 277 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT--YAD--NNA-VGYFIKQGFTK 336 (561)
Q Consensus 277 ~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt--~AD--~~A-igFYkKqGFsk 336 (561)
..|+.|.-+.|...-||.|.|+.|...|-+|++. .|..++.| +.| +.| -.|--..||..
T Consensus 82 e~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~-agy~~~tCEVn~DppnpasdaFHaalGF~e 145 (167)
T COG3818 82 ENFFYVDRVVVASRARGRGVARALYADLFSYAEL-AGYPYLTCEVNLDPPNPASDAFHAALGFHE 145 (167)
T ss_pred CceEEEEEEEEEecccccchHHHHHHHHHHHHHh-cCCceEEEEecCCCCChHHHHHhhhcCceE
Confidence 5789999999999999999999999999999997 78877766 444 333 44888999964
No 150
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=60.90 E-value=8.4 Score=43.60 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=14.5
Q ss_pred hhCCCCcHHHHHhhhhcCCC
Q 008580 235 RQLPNMPKEYIVRLVMDRSH 254 (561)
Q Consensus 235 ~qLP~MpkeYI~Rlv~D~~h 254 (561)
.|-||--++-|..-=||..+
T Consensus 220 eQaPKSr~eLv~~YGyDIRn 239 (694)
T KOG4264|consen 220 EQAPKSRKELVTKYGYDIRN 239 (694)
T ss_pred hcCchHHHHHHHHhCccccC
Confidence 35677777888887787665
No 151
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=60.60 E-value=15 Score=39.96 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=45.0
Q ss_pred CcEEEEEECCeEEEEEEEeeec------CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCc
Q 008580 254 HKSVMVIRGNVVVGGITYRPYV------SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGL 314 (561)
Q Consensus 254 h~slvl~~~g~VIGGI~~R~f~------~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi 314 (561)
|.++=+...++.||+|+..+.. .-.-+||.|+||+...|+|++.=-|+.++-..+.- .||
T Consensus 136 HiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl-~gI 201 (421)
T KOG2779|consen 136 HIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNL-EGI 201 (421)
T ss_pred EEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhh-hhh
Confidence 4554455568999999865521 12569999999999999999999998887666553 444
No 152
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=59.83 E-value=34 Score=34.18 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=35.2
Q ss_pred hhcCCCcEEEEE---EC-C-eEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHh
Q 008580 249 VMDRSHKSVMVI---RG-N-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (561)
Q Consensus 249 v~D~~h~slvl~---~~-g-~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~ 310 (561)
-||-....|-++ .+ | .++|+-.-.-. ...---+.=+.|-|.||+||||+.|+..-=+.++.
T Consensus 46 yydv~~F~FYVl~e~d~~g~h~vGyFSKEk~-s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~ 111 (188)
T PF01853_consen 46 YYDVDPFLFYVLTEKDDDGFHIVGYFSKEKE-SWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRR 111 (188)
T ss_dssp TT-STTEEEEEEEEEETTEEEEEEEEEEESS--TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHH
T ss_pred EeecCceEEEEEEEecCccceeEEEEEEEec-ccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhc
Confidence 345544444433 23 3 47775543222 12112333367899999999999999987777775
No 153
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=59.75 E-value=15 Score=32.00 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=39.0
Q ss_pred HHhhhhcCCCcEEEEEECCe-EEEEEEEeeec------------------------CCceEEEEEEEeccCCcccChHHH
Q 008580 245 IVRLVMDRSHKSVMVIRGNV-VVGGITYRPYV------------------------SQKFGEIAFCAITADEQVKGYGTR 299 (561)
Q Consensus 245 I~Rlv~D~~h~slvl~~~g~-VIGGI~~R~f~------------------------~~~f~EI~f~AV~~~~QgKGyGt~ 299 (561)
+..=-||.....+++..++. +||.+ |+.. ....+||--+||.++||+...-..
T Consensus 21 ~e~D~fD~~~~h~lv~~~~~~~VGt~--Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~ 98 (101)
T PF13444_consen 21 RERDEFDEHSVHLLVRDKNTEVVGTV--RLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLL 98 (101)
T ss_pred ccccCCCCCccEEEEEECCCCEEEEE--EeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHH
Confidence 45556788777788877766 99954 3311 125588888999999998877666
Q ss_pred HH
Q 008580 300 LM 301 (561)
Q Consensus 300 Lm 301 (561)
|+
T Consensus 99 L~ 100 (101)
T PF13444_consen 99 LW 100 (101)
T ss_pred Hh
Confidence 54
No 154
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=57.53 E-value=3.7 Score=36.73 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=0.0
Q ss_pred CCCCCCCCcCcc
Q 008580 84 GADSDADDSEDA 95 (561)
Q Consensus 84 ~~~~~~~~~~~~ 95 (561)
+.||++|++||.
T Consensus 9 ~~dse~dsdEde 20 (101)
T PF09026_consen 9 EEDSESDSDEDE 20 (101)
T ss_dssp ------------
T ss_pred Ccccccccccch
Confidence 445555544333
No 155
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=54.77 E-value=35 Score=36.17 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=35.9
Q ss_pred hcCCCcEEEEEE----CC-eEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHh
Q 008580 250 MDRSHKSVMVIR----GN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (561)
Q Consensus 250 ~D~~h~slvl~~----~g-~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~ 310 (561)
||-...-|.++- +| .+||+-.-.-. ....--+.=+.|-|-||+||||+.|++.-=+..|.
T Consensus 122 yDV~~FlFYVl~e~d~~g~h~vGYFSKEK~-s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~ 186 (290)
T PLN03238 122 YDVDPFLFYVMTEVDDHGSHIVGYFSKEKV-SAEDYNLACILTLPPYQRKGYGKFLISFAYELSKR 186 (290)
T ss_pred ccccceEEEEEEEecCCCcEEEEEeceecc-ccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhc
Confidence 455444444432 24 57775442221 11111233356889999999999999987777764
No 156
>PLN03239 histone acetyltransferase; Provisional
Probab=50.58 E-value=33 Score=37.31 Aligned_cols=61 Identities=21% Similarity=0.162 Sum_probs=36.3
Q ss_pred hhcCCCcEEEEEE----CC-eEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHh
Q 008580 249 VMDRSHKSVMVIR----GN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (561)
Q Consensus 249 v~D~~h~slvl~~----~g-~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~ 310 (561)
-||-...-|.++- .| .+||+-.-.-. +..---+.=+.|-|-||+||||+.|++.-=+..|.
T Consensus 179 yyDV~~FlFYVl~e~D~~g~h~vGYFSKEK~-s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~ 244 (351)
T PLN03239 179 YFDVDPFLFYVLCEVDERGFHPVGYYSKEKY-SDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKK 244 (351)
T ss_pred eccccceEEEEEEEecCCceEEEEEeeeccc-CCCCCceEEEEecChhhhcchhhhhHhhhhHhhhh
Confidence 3555555555442 24 57775442221 11111233356889999999999999987777664
No 157
>PTZ00064 histone acetyltransferase; Provisional
Probab=49.73 E-value=29 Score=39.43 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=35.4
Q ss_pred hcCCCcEEEEEE----CC-eEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHh
Q 008580 250 MDRSHKSVMVIR----GN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (561)
Q Consensus 250 ~D~~h~slvl~~----~g-~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~ 310 (561)
||-..+-|.++- .| .+||+-.=.-. ...-.-+.-+-|-|-||+||||+.|+..--+..|.
T Consensus 351 yDVdpFlFYVLtE~D~~G~HiVGYFSKEK~-S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrr 415 (552)
T PTZ00064 351 YDVEPFLFYIVTEVDEEGCHIVGYFSKEKV-SLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLK 415 (552)
T ss_pred ccccceEEEEEEEecCCCcEEEEEeccccc-CcccCceEEEEecchhhhcchhhhhhhhhhhhhhh
Confidence 444444444432 24 67775442221 11111233356889999999999999987777664
No 158
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=47.32 E-value=3.3 Score=47.78 Aligned_cols=75 Identities=8% Similarity=0.030 Sum_probs=65.8
Q ss_pred CCCcCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 008580 470 WPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHF 545 (561)
Q Consensus 470 ~pF~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~yk~A~~Lek~F 545 (561)
..|..-++.+.+|+||.+++-||-+....+++..++ |.....|..|+.++|.|+..||.+..-++.++..|.+..
T Consensus 214 er~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~E-vfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 214 ERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQE-VFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred cccccCcccccccceeEeeCCccCccccccchhccc-ceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 456677788899999999999999999999999999 456667999999999999999999999999888876543
No 159
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=45.76 E-value=1.5e+02 Score=28.99 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=50.2
Q ss_pred cHHHHHhhhhcCCCcEEEEEECCeEEEEEEEe-eecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEEE
Q 008580 241 PKEYIVRLVMDRSHKSVMVIRGNVVVGGITYR-PYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLT 319 (561)
Q Consensus 241 pkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R-~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt 319 (561)
...|+.|+ ..+-..+.+..+-+.++.++.. +-....+..+.-|||.+.-||.|++-.+-+.|++... -...-+
T Consensus 51 v~~yl~~l--~~~~~~iy~d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~p----~L~Wrs 124 (170)
T PF04768_consen 51 VDHYLDRL--NNRLFKIYVDEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDFP----KLFWRS 124 (170)
T ss_dssp HTTHHHHH--HTS-SEEEEETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-S----SEEEEE
T ss_pred HHHHHHHh--hccceEEEEeCCceEEEEEEecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhcc----ceEEEe
Confidence 45898887 2233333333333455544432 2345568999999999999999999999999876643 233344
Q ss_pred ccCCcchhhh
Q 008580 320 YADNNAVGYF 329 (561)
Q Consensus 320 ~AD~~AigFY 329 (561)
-.++.-..||
T Consensus 125 r~~n~~~~Wy 134 (170)
T PF04768_consen 125 REDNPNNKWY 134 (170)
T ss_dssp ETT-TTHHHH
T ss_pred cCCCCcccEE
Confidence 5556555543
No 160
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=45.71 E-value=80 Score=27.87 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 008580 504 EQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSG 552 (561)
Q Consensus 504 g~YY~S~~eF~aDvrLIF~Ncr~YN~pdS~~yk~A~~Lek~Fe~~lkei 552 (561)
+..|.|...|...+-.|-.....++..+..+..+|..+.+.|++.|++.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3458999999999999988888888878899999999999999998753
No 161
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=45.28 E-value=24 Score=39.48 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=36.0
Q ss_pred hhcCCCcEEEEEE----CC-eEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHh
Q 008580 249 VMDRSHKSVMVIR----GN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (561)
Q Consensus 249 v~D~~h~slvl~~----~g-~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~ 310 (561)
-||-..+-|.++- +| .+||+-.-.-....+ .-+.-+-|-|-||+||||+.|+..--+..+.
T Consensus 272 yydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~-~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~ 337 (450)
T PLN00104 272 YYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEED-YNLACILTLPPYQRKGYGKFLIAFSYELSKR 337 (450)
T ss_pred eccccceEEEEEEEecCCCcEEEEEecccccCcCC-CceEEEEecchhhhcchhheehhheehhhhc
Confidence 3555455554442 24 677755422211111 1233355889999999999999886666654
No 162
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=19 Score=44.60 Aligned_cols=15 Identities=47% Similarity=0.671 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhCCC
Q 008580 225 WLIGLKNIFARQLPN 239 (561)
Q Consensus 225 ~L~~lkniF~~qLP~ 239 (561)
-|-+..|+--+|.|.
T Consensus 1969 a~Agann~qiRqip~ 1983 (3015)
T KOG0943|consen 1969 ALAGANNIQIRQIPD 1983 (3015)
T ss_pred hhcccCceeeeecCC
Confidence 344445555555543
No 163
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=39.42 E-value=21 Score=31.86 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=11.8
Q ss_pred ccccCCcccccccCCCcccch
Q 008580 94 DAVVDDDEDEFENDNDSSMRT 114 (561)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ 114 (561)
+++.+|||||.|+++...-||
T Consensus 64 E~ldg~deddaede~n~~n~t 84 (96)
T PF15387_consen 64 EALDGDDEDDAEDENNIDNRT 84 (96)
T ss_pred hhccCccccccccccCccccc
Confidence 444555555555555555666
No 164
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=37.31 E-value=30 Score=38.13 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=21.3
Q ss_pred EEEEEeccCCcccChHHHHHHHHHHHHH
Q 008580 282 IAFCAITADEQVKGYGTRLMNHLKQHAR 309 (561)
Q Consensus 282 I~f~AV~~~~QgKGyGt~Lmn~Lke~ak 309 (561)
+.=+-|-|-||+||||+.|+..==+.-|
T Consensus 263 laCILtLPpyQRkGYGklLIdFSYeLSr 290 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDFSYELSR 290 (396)
T ss_pred eeeeeecChhhhcccchhhhhhhhhhhc
Confidence 3345689999999999999987544443
No 165
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=35.71 E-value=1.8e+02 Score=26.08 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=28.0
Q ss_pred CceEEEEEEEeccCCcccChHHHHHHHHHHHH
Q 008580 277 QKFGEIAFCAITADEQVKGYGTRLMNHLKQHA 308 (561)
Q Consensus 277 ~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~a 308 (561)
..+..+.-|||+..-++.|++-.+-+.|++..
T Consensus 31 ~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~ 62 (98)
T cd03173 31 NSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDF 62 (98)
T ss_pred CCCEEEEEEEEcccccccCHHHHHHHHHHhhC
Confidence 46788888999999999999999999888663
No 166
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=33.89 E-value=21 Score=43.13 Aligned_cols=12 Identities=42% Similarity=0.687 Sum_probs=5.6
Q ss_pred CCCCCCcCcccc
Q 008580 86 DSDADDSEDAVV 97 (561)
Q Consensus 86 ~~~~~~~~~~~~ 97 (561)
+.|+|++||...
T Consensus 1404 ~dd~DeeeD~e~ 1415 (1516)
T KOG1832|consen 1404 DDDSDEEEDDET 1415 (1516)
T ss_pred ccccCccccchh
Confidence 445554444433
No 167
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=32.96 E-value=4.1e+02 Score=24.80 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=50.8
Q ss_pred HHHhhhhcCCCcE--EEEEECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEEE
Q 008580 244 YIVRLVMDRSHKS--VMVIRGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFL 318 (561)
Q Consensus 244 YI~Rlv~D~~h~s--lvl~~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~l 318 (561)
.-.+.+.+.-..+ +.+..+|+.||..+.-..++. +--+++--+|++....+|+..+-...++||+ .++.++.
T Consensus 27 ~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~g--lSaVY~fyDPd~~~~SlG~~~iL~eI~~a~~-~~l~y~Y 100 (128)
T PF04377_consen 27 QYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDG--LSAVYTFYDPDYSKRSLGTYSILREIELARE-LGLPYYY 100 (128)
T ss_pred HHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccch--hhheeeeeCCCccccCcHHHHHHHHHHHHHH-cCCCEEe
Confidence 3345555542233 334467999998776665443 4455666799999999999999888999998 7877653
No 168
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=31.60 E-value=36 Score=38.83 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=22.5
Q ss_pred hhhhcCCccccccccceeeeeeecCCCceeEeeeeCCCCCcc
Q 008580 328 YFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDPKLPYT 369 (561)
Q Consensus 328 FYkKqGFsk~i~l~~~~w~G~IKdYegatLM~C~l~p~i~Y~ 369 (561)
||...-|.. + |--+|.+|....|..||+++..
T Consensus 441 f~d~~t~d~-------v---~ki~i~~aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 441 FFDRMTLDT-------V---YKIDISTASVVRCLWHPKLNQI 472 (641)
T ss_pred EEeccceee-------E---EEecCCCceEEEEeecchhhhe
Confidence 777666643 1 2226779999999999998743
No 169
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.17 E-value=25 Score=38.79 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=8.8
Q ss_pred HHHhhhCCCCc
Q 008580 231 NIFARQLPNMP 241 (561)
Q Consensus 231 niF~~qLP~Mp 241 (561)
.-|..|||..-
T Consensus 352 hsfAq~lp~i~ 362 (514)
T KOG3130|consen 352 HSFAQELPTIR 362 (514)
T ss_pred ccccccCCccC
Confidence 66889999874
No 170
>PRK04531 acetylglutamate kinase; Provisional
Probab=30.22 E-value=2.8e+02 Score=30.67 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=44.1
Q ss_pred HHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEECC-eEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHH
Q 008580 230 KNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGN-VVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHA 308 (561)
Q Consensus 230 kniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~~g-~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~a 308 (561)
..-|.++|= .+|+.|. ..--+++.++ +.++.++ +...+..+.-|||...-|+.|++--+.+.+++.+
T Consensus 272 ~~sf~r~~~---~~y~~~~-----~~~~~y~~~~y~~~Aiv~----~~~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~ 339 (398)
T PRK04531 272 ESSFGRTLK---PDYFDTT-----QLLRAYVSENYRAAAILT----ETGGGPYLDKFAVLDDARGEGLGRAVWNVMREET 339 (398)
T ss_pred hhhcccchH---HHHhccC-----CceEEEEeCCCcEEEEEe----cCCCceEeEEEEEccchhhcChHHHHHHHHHhhC
Confidence 445666653 5788752 1222232332 4444333 2355678888999999999999999999988775
Q ss_pred H
Q 008580 309 R 309 (561)
Q Consensus 309 k 309 (561)
.
T Consensus 340 ~ 340 (398)
T PRK04531 340 P 340 (398)
T ss_pred C
Confidence 3
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=29.28 E-value=36 Score=40.83 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=49.7
Q ss_pred cCCCCCCCCCchhhhcCCCCCHHHHHHHHhcCCCC--------------C----------CHHH------HHHHHHHHHH
Q 008580 473 KEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYY--------------V----------TFEM------FVADVKRMFA 522 (561)
Q Consensus 473 ~~PVd~~evPDYydIIk~PMDL~TIkkKL~~g~YY--------------~----------S~~e------F~aDvrLIF~ 522 (561)
.-+++....|-|-.+...|.+|+|++.+|.+.. | . ++.+ ...-+.+|-.
T Consensus 87 v~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~-k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 87 VPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRA-KDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred ccCcCCCCCcceeeeecccchhcchhHHHHhhh-hhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 346777788889999999999999999998643 3 1 2223 5667888999
Q ss_pred HHhhhCCCCCHHHHHHH
Q 008580 523 NARTYNSPDTIYYKCAT 539 (561)
Q Consensus 523 Ncr~YN~pdS~~yk~A~ 539 (561)
||+.+|.|+| +++-++
T Consensus 166 at~~~akPgt-mvqkmk 181 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMK 181 (1113)
T ss_pred ceeeecCcHH-HHHHHH
Confidence 9999999999 444433
No 172
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.07 E-value=28 Score=32.90 Aligned_cols=95 Identities=19% Similarity=0.344 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHhhhCCCCcHHHHHhhhhcCCCcEEEEEECCeEEEEEEEeeec--C-CceEEEEEEEeccCCcccCh
Q 008580 220 DEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRGNVVVGGITYRPYV--S-QKFGEIAFCAITADEQVKGY 296 (561)
Q Consensus 220 ~~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D~~h~slvl~~~g~VIGGI~~R~f~--~-~~f~EI~f~AV~~~~QgKGy 296 (561)
.+-..+|+. +.++||.||.++-. .+++ |.||..++|. . .+-.=+.|.|-+...=+||+
T Consensus 26 e~ry~~lI~----lgk~Lp~lpe~~r~--------------~~~~-V~GCqS~VWl~~~~~~dg~~~f~~dSDa~IvkGl 86 (138)
T TIGR03391 26 EDRYRQLIL----LAKQLPALPEALKT--------------QATE-LTGCENRVWLGHQVLPDGTLHFYGDSEGRIVRGL 86 (138)
T ss_pred HHHHHHHHH----HHhhCCCCChHHcC--------------hhhc-cCCcccceeeeeeecCCCEEEEEecCccHHHHHH
Confidence 455555655 47999999999822 2344 4445444433 1 12223455666666778999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEccCCcchhhhhhcCCccccccc
Q 008580 297 GTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLE 341 (561)
Q Consensus 297 Gt~Lmn~Lke~ak~~~gi~~~lt~AD~~AigFYkKqGFsk~i~l~ 341 (561)
...|+.-+-...-+ .| + ......||++.|+...++-.
T Consensus 87 ~alL~~~~~g~tp~--eI---~---~~d~~~~~~~lGL~~~LSps 123 (138)
T TIGR03391 87 LAVLLTAVEGKTPE--QL---L---AQDPLALFDELGLRAQLSAS 123 (138)
T ss_pred HHHHHHHHcCCCHH--HH---H---HCCHHHHHHHcCchhccCcc
Confidence 99888776443222 11 1 12344789999997755433
No 173
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.23 E-value=1.6e+02 Score=32.18 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=46.5
Q ss_pred CcEEEEEEC-CeEEEEE-EEee-ec-CCceEEEEEEEecc--CCcccChHHHHHHHHHHHHHhhcCceEEEE-----cc-
Q 008580 254 HKSVMVIRG-NVVVGGI-TYRP-YV-SQKFGEIAFCAITA--DEQVKGYGTRLMNHLKQHARDVDGLTHFLT-----YA- 321 (561)
Q Consensus 254 h~slvl~~~-g~VIGGI-~~R~-f~-~~~f~EI~f~AV~~--~~QgKGyGt~Lmn~Lke~ak~~~gi~~~lt-----~A- 321 (561)
...+.+..+ ++|+|++ .++. .. ...+++|.. -| ++...-+=..++..|++++|+ +++..+-. +.
T Consensus 35 ~~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yipr---GPv~d~~d~ell~~f~~~Lk~~akk-~~a~~lridP~~~~~~ 110 (406)
T PF02388_consen 35 VERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIPR---GPVMDYSDEELLEFFLEELKKYAKK-KRALFLRIDPNVIYQE 110 (406)
T ss_dssp EEEEEEE-TTS-EEEEEEEEEEECTTTCEEEEETT-----EC-TT-HHHHHHHHHHHHHHHCT-TTEEEEEE--S-EEEC
T ss_pred EEEEEEEeCCCeEEEEEEEEEeccCCceeEEEECC---CCCCCCCCHHHHHHHHHHHHHHHHH-CCEEEEEEeCchhhhh
Confidence 344555555 5666654 2222 22 222344433 33 777777888899999999997 45443211 11
Q ss_pred ------------CCcchhhhhhcCCccccccccceeeeeeecCCC
Q 008580 322 ------------DNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDG 354 (561)
Q Consensus 322 ------------D~~AigFYkKqGFsk~i~l~~~~w~G~IKdYeg 354 (561)
+...+..|++.|| .|.|+-++|++
T Consensus 111 ~~~~g~~~~~~~~~~~~~~l~~~G~---------~~~g~~~~~~~ 146 (406)
T PF02388_consen 111 RDEDGEPIEGEENDELIENLKALGF---------RHQGFTKGYDD 146 (406)
T ss_dssp E-TTS-EEEE-S-THHHHHHHHTT----------CCTS-SSSTTS
T ss_pred cccccccccCcchHHHHHHHHhcCc---------eecCcccCCCc
Confidence 2234678999999 44666666654
No 174
>PRK14852 hypothetical protein; Provisional
Probab=26.64 E-value=3e+02 Score=34.14 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=62.6
Q ss_pred CCCcEEEEEECCeEEEEEEEeee------------c---------CCceEEEEEEEeccCCcccChHHHHHHHHHHHHHh
Q 008580 252 RSHKSVMVIRGNVVVGGITYRPY------------V---------SQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARD 310 (561)
Q Consensus 252 ~~h~slvl~~~g~VIGGI~~R~f------------~---------~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~ 310 (561)
++..+|+....++|||..+..+- . ...++|+.-+||++..+.+=+=-.|++.+-+|+..
T Consensus 73 p~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~ 152 (989)
T PRK14852 73 PATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMM 152 (989)
T ss_pred CcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHH
Confidence 34455666556788887753321 1 12569999999987776655555677777788875
Q ss_pred hcCceEEEEccCCcchhhhh-hcCCccccccccceeeeeeecCC
Q 008580 311 VDGLTHFLTYADNNAVGYFI-KQGFTKEIYLEKDRWQGYIKDYD 353 (561)
Q Consensus 311 ~~gi~~~lt~AD~~AigFYk-KqGFsk~i~l~~~~w~G~IKdYe 353 (561)
.++.+++..-+-.=.+||+ -.||+. .|-.+.|+
T Consensus 153 -~~~dd~~i~VnPkH~~FY~r~l~f~~---------ig~~r~~p 186 (989)
T PRK14852 153 -SEVDDILVTVNPKHVKFYTDIFLFKP---------FGEVRHYD 186 (989)
T ss_pred -cCCCeEEEEECcchHHHHHHHhCCcc---------ccccccCC
Confidence 7888877665555688999 689965 46666665
No 175
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=26.41 E-value=1.3e+02 Score=33.26 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.2
Q ss_pred ccCCCCCCCCCCCCCCCccccccchhHHHhHHHH
Q 008580 10 LTAPNRSRSSQTPSPSHSASASATSSIHKRKLAA 43 (561)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (561)
|+.-..++||-+|+|+.+.+.+.-+++.-.+.++
T Consensus 196 ~~~e~~~sss~~~~p~~~~~~ss~~~~~~~~~~e 229 (548)
T COG5665 196 MGCEIQPSSSNNEAPKEGNNQTSLSSIRSSKKQE 229 (548)
T ss_pred hccccCCccCCCCCCcccCccccHHHHHhHHHhh
Confidence 3444457788889999998888888888877765
No 176
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=24.33 E-value=83 Score=34.61 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=26.7
Q ss_pred EEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE
Q 008580 282 IAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (561)
Q Consensus 282 I~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~ 317 (561)
|.-+-|-|.||++|+|+.||+.+.........+..+
T Consensus 220 iSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v~Di 255 (403)
T KOG2696|consen 220 ISQMLILPPFQGKGLGSQLYEAIARDYLEEPTVLDI 255 (403)
T ss_pred hheeEEeccccCCchHHHHHHHHHHhhccCCceeEE
Confidence 455778999999999999999998444332455444
No 177
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=22.46 E-value=1.1e+03 Score=29.85 Aligned_cols=129 Identities=13% Similarity=0.104 Sum_probs=73.2
Q ss_pred cccccCCcchhhHHHHHHHHcCceEEEEEeCCC-hhhHHHHHHHHHHHHhhhCCCCcHH-HHHhhhhcCCCcEEEE-E--
Q 008580 186 NIQASGAYSAREELLKREEEAGNLKFVCLSNDG-IDEHMVWLIGLKNIFARQLPNMPKE-YIVRLVMDRSHKSVMV-I-- 260 (561)
Q Consensus 186 ~~~~~~~~~~r~~~~~~ee~~g~i~f~vv~nd~-~~~~~~~L~~lkniF~~qLP~Mpke-YI~Rlv~D~~h~slvl-~-- 260 (561)
.+...|.-..-=..+...-++.-++|+++.-.. ..+.+.-|..+-+-....=++|--. ++-|.--+....+.++ .
T Consensus 348 ~Fsl~Gk~~~~lR~a~nra~r~G~t~~i~~~~~~~~~~~~~L~~isd~Wl~~~~EkGFSm~LGr~~~~~~~~~~i~~a~d 427 (1094)
T PRK02983 348 DFTLSGPDMRPVRQAVTRVRRAGYTVRIRRHRDLPAEEMAQVIARADAWRDTETERGFSMALGRLGDPADGDCLLVEAHD 427 (1094)
T ss_pred cCCccCchhHHHHHHHHHHHhCCCEEEEeeCCCCCHHHHHHHHHHHHHHhcCCCCCceeeecCcccchhcCceEEEEEEC
Confidence 344445444333445555556678999886644 3334444444333333332222110 1111111111222222 2
Q ss_pred ECCeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE
Q 008580 261 RGNVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF 317 (561)
Q Consensus 261 ~~g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~ 317 (561)
.+|+|+|.+.+.++...+ +-+.+|=-.++ --.|+=-.|+-++.+++++ .|+..+
T Consensus 428 ~~G~i~af~s~~p~~~~g-~slDLMRr~pd-apnGvmE~L~~~l~~~~k~-~G~~~~ 481 (1094)
T PRK02983 428 ADGQVVALLSFVPWGRRG-LSLDLMRRSPD-APNGVIELMVAELALEAES-LGITRI 481 (1094)
T ss_pred CCCeEEEEEEEeeeCCCC-EEEEecccCCC-CCCCHHHHHHHHHHHHHHH-cCCCEE
Confidence 268999999999975443 56666665555 3789999999999999998 888765
No 178
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=22.40 E-value=4.3e+02 Score=24.18 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=27.0
Q ss_pred CceEEEEEEEeccCCcc-cChHHHHHHHHHHH
Q 008580 277 QKFGEIAFCAITADEQV-KGYGTRLMNHLKQH 307 (561)
Q Consensus 277 ~~f~EI~f~AV~~~~Qg-KGyGt~Lmn~Lke~ 307 (561)
..+..+.-|||...-|| .|++-.+-+.|++.
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~ 68 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLDG 68 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHHc
Confidence 46688888999999997 89999999988864
No 179
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=21.55 E-value=2e+02 Score=29.96 Aligned_cols=116 Identities=12% Similarity=0.235 Sum_probs=67.0
Q ss_pred ccccccccCCcchhhHHHHH-HHHcCceEEEEEeCCC-------hhhHHHHHHHHHHHHhhhCCCCcHHHHHhhhhcC-C
Q 008580 183 FTENIQASGAYSAREELLKR-EEEAGNLKFVCLSNDG-------IDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDR-S 253 (561)
Q Consensus 183 ~~~~~~~~~~~~~r~~~~~~-ee~~g~i~f~vv~nd~-------~~~~~~~L~~lkniF~~qLP~MpkeYI~Rlv~D~-~ 253 (561)
+.++-..++.+.+++-.... ++-.+..+..+|.... ...-..++..|+.+|++.-+ .-+.||....-.. .
T Consensus 94 LNp~s~~gk~f~p~EI~~LL~~~~~~~~~~~~i~~g~~v~lg~p~~~P~~lv~~L~~lf~~~k~-V~rAyL~~~~~~~d~ 172 (246)
T PRK11611 94 LNPKLPTGKEFMPREISLLLGEEGNPLSSQEVLEGGESLLLSEVAEPPAQMIDSLTTLFKTIKP-VKRAFLASIKENADA 172 (246)
T ss_pred EcCCCCCCcccCHHHHHHHHhccCCCcceeEEeCCCCEEEecCCccchHHHHHHHHHHHhhcch-HHHHHHHHHhccCCC
Confidence 44444445555666644433 3346666667776542 23446678899998887644 6789998655432 1
Q ss_pred CcEEEE--EECC---eEEEE---EEEeeecCCceEEEEEEEeccCCcccChHHHHHHH
Q 008580 254 HKSVMV--IRGN---VVVGG---ITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNH 303 (561)
Q Consensus 254 h~slvl--~~~g---~VIGG---I~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~ 303 (561)
...++| .-+| .+|.. +... +...+ -.|.||.|.++ .+|+|..+++|
T Consensus 173 ~p~LLI~le~~~d~e~ii~~ag~~a~~-~l~~d-~~IDi~~v~~~--e~gis~~~~~h 226 (246)
T PRK11611 173 QPNLLIGIEADGDIEEIIQAAGSVATD-TLPGD-EPIDICQVKEG--EKGISHFITEH 226 (246)
T ss_pred CCceEEEEecCCCHHHHHHHHhHHHHH-hCCCC-CceeEEEecCC--CccHHHHHHhc
Confidence 122332 2233 34443 3322 22233 47888999986 45688888777
No 180
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=20.76 E-value=51 Score=36.89 Aligned_cols=9 Identities=11% Similarity=0.379 Sum_probs=5.9
Q ss_pred hhcCCCCCH
Q 008580 486 EIIKDPMDL 494 (561)
Q Consensus 486 dIIk~PMDL 494 (561)
-.|+.|||+
T Consensus 383 ~H~RgaIDI 391 (458)
T PF10446_consen 383 THTRGAIDI 391 (458)
T ss_pred Ccccccccc
Confidence 467777773
No 181
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=20.13 E-value=1.5e+02 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 008580 495 RTMSKRVESEQYYVTFEMFVADVKRMFAN 523 (561)
Q Consensus 495 ~TIkkKL~~g~YY~S~~eF~aDvrLIF~N 523 (561)
.-|+.++++|. |.|..++++|..+++.=
T Consensus 12 ~~i~~~V~sG~-Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGR-YGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHHH
Confidence 45889999987 89999999999887764
No 182
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.04 E-value=6.2e+02 Score=27.76 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=46.6
Q ss_pred CeEEEEEEEeeecCCceEEEEEEEeccCCcccChHHHHHHHHHHHHHhhcCceEE--EEccCCcc-----hhhhh-hcCC
Q 008580 263 NVVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHF--LTYADNNA-----VGYFI-KQGF 334 (561)
Q Consensus 263 g~VIGGI~~R~f~~~~f~EI~f~AV~~~~QgKGyGt~Lmn~Lke~ak~~~gi~~~--lt~AD~~A-----igFYk-KqGF 334 (561)
+.+|+|..+-.+ .+.+...|-+-..+++.-+=-..|.-++.++|++ .|+... .-...... .|.|+ |.||
T Consensus 302 ~~~la~~l~~~~--g~~~~yly~gs~~~~~~~~~~~~l~~~~i~~a~~-~G~~~ydf~Gi~~~~~~~~~~~Gl~~FK~~F 378 (406)
T PF02388_consen 302 EIPLAGALFIYY--GDEAYYLYGGSDEEYRKFYAPYLLQWEAIKYAKE-KGIKRYDFGGISGDFDGSDPDYGLYKFKKGF 378 (406)
T ss_dssp EEEEEEEEEEEE--TTEEEEEEEEE-CGCGGCTHHHHHHHHHHHHHHH-TT-SEEEEEE-SSSSTTTHTTHHHHHHHHCC
T ss_pred cceEEEEEEEEE--CCEEEEEECccchhhHhcCcchHHHHHHHHHHHH-CCCCEEEeeCCCCCCCCCcccchHHHHhhcC
Confidence 458888777666 6778888889999999888666677788999998 788753 22222212 36665 7788
Done!