Query 008581
Match_columns 561
No_of_seqs 442 out of 1627
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:53:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 5.8E-22 2E-26 151.6 -0.7 57 287-347 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.4 9.9E-14 3.4E-18 116.7 3.7 82 138-220 3-93 (94)
3 2ct7_A Ring finger protein 31; 99.3 8.9E-14 3E-18 114.8 -2.7 78 202-283 4-85 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.1 1.6E-12 5.5E-17 105.6 -4.8 69 199-271 2-76 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.0 1.3E-11 4.5E-16 109.7 -2.9 116 138-305 5-126 (133)
6 3hcs_A TNF receptor-associated 98.5 9.5E-09 3.3E-13 95.6 -0.4 81 137-238 15-97 (170)
7 1rmd_A RAG1; V(D)J recombinati 98.4 1.2E-07 3.9E-12 82.4 2.5 79 140-237 23-102 (116)
8 3l11_A E3 ubiquitin-protein li 98.4 2.1E-07 7.1E-12 80.7 4.1 49 138-193 13-62 (115)
9 2ecy_A TNF receptor-associated 98.4 1.2E-07 4.1E-12 73.6 2.2 50 138-194 13-63 (66)
10 3ztg_A E3 ubiquitin-protein li 98.3 9.3E-08 3.2E-12 79.4 1.4 47 138-191 11-60 (92)
11 2d8t_A Dactylidin, ring finger 98.3 2.7E-07 9.3E-12 72.7 4.0 55 136-198 11-66 (71)
12 1t1h_A Gspef-atpub14, armadill 98.3 1.5E-07 5E-12 75.6 2.3 64 138-208 6-71 (78)
13 3hct_A TNF receptor-associated 98.3 2.8E-07 9.5E-12 80.3 3.7 82 137-238 15-97 (118)
14 1jm7_A BRCA1, breast cancer ty 98.3 3.5E-07 1.2E-11 78.6 3.9 67 140-212 21-90 (112)
15 2ysl_A Tripartite motif-contai 98.3 2.6E-07 8.8E-12 73.1 2.3 53 137-194 17-70 (73)
16 3knv_A TNF receptor-associated 98.2 6.5E-08 2.2E-12 87.1 -1.9 84 137-237 28-118 (141)
17 2yu4_A E3 SUMO-protein ligase 98.2 1.8E-07 6.3E-12 78.1 0.9 54 138-193 5-63 (94)
18 2ct2_A Tripartite motif protei 98.2 3.7E-07 1.3E-11 74.8 2.5 57 138-198 13-73 (88)
19 2egp_A Tripartite motif-contai 98.2 4.5E-07 1.5E-11 72.8 2.8 54 138-195 10-67 (79)
20 1e4u_A Transcriptional repress 98.2 3E-07 1E-11 74.1 1.6 52 138-194 9-63 (78)
21 3lrq_A E3 ubiquitin-protein li 98.2 2.7E-07 9.2E-12 78.0 1.3 64 139-209 21-87 (100)
22 3fl2_A E3 ubiquitin-protein li 98.2 1.9E-07 6.6E-12 82.0 0.4 48 139-193 51-99 (124)
23 2yur_A Retinoblastoma-binding 98.2 7.6E-07 2.6E-11 70.8 3.4 48 138-191 13-62 (74)
24 2y43_A E3 ubiquitin-protein li 98.1 4.9E-07 1.7E-11 76.1 1.6 64 139-210 21-87 (99)
25 2ysj_A Tripartite motif-contai 98.1 9.2E-07 3.2E-11 67.8 2.6 45 137-184 17-62 (63)
26 4ayc_A E3 ubiquitin-protein li 98.1 6.1E-07 2.1E-11 80.4 1.8 45 140-192 53-98 (138)
27 2csy_A Zinc finger protein 183 98.1 8.8E-07 3E-11 71.6 2.4 47 138-192 13-60 (81)
28 2ecj_A Tripartite motif-contai 98.1 1.3E-06 4.5E-11 65.6 3.2 44 138-184 13-57 (58)
29 2c2l_A CHIP, carboxy terminus 98.1 9.5E-07 3.2E-11 88.2 3.0 50 137-194 205-256 (281)
30 1bor_A Transcription factor PM 98.1 1.5E-06 5.2E-11 65.1 2.9 45 138-192 4-48 (56)
31 2djb_A Polycomb group ring fin 98.1 6.7E-07 2.3E-11 70.6 0.9 50 138-195 13-64 (72)
32 1z6u_A NP95-like ring finger p 98.1 6.1E-07 2.1E-11 81.6 0.6 48 140-194 78-126 (150)
33 1jm7_B BARD1, BRCA1-associated 98.1 1.2E-06 4.1E-11 76.1 2.3 45 139-193 21-67 (117)
34 1g25_A CDK-activating kinase a 98.0 3.8E-07 1.3E-11 70.5 -1.0 52 140-197 3-59 (65)
35 2ecw_A Tripartite motif-contai 98.0 1.7E-06 5.7E-11 70.2 2.6 53 138-194 17-72 (85)
36 2ecv_A Tripartite motif-contai 98.0 1.8E-06 6E-11 70.0 2.7 51 138-194 17-72 (85)
37 2kr4_A Ubiquitin conjugation f 98.0 8.3E-07 2.8E-11 72.7 0.7 49 138-194 12-61 (85)
38 2kre_A Ubiquitin conjugation f 98.0 9.6E-07 3.3E-11 74.6 1.0 49 138-194 27-76 (100)
39 3ng2_A RNF4, snurf, ring finge 98.0 3.8E-07 1.3E-11 71.6 -1.9 54 138-197 8-67 (71)
40 3htk_C E3 SUMO-protein ligase 98.0 2.1E-06 7.2E-11 84.0 2.9 52 138-194 179-233 (267)
41 2ect_A Ring finger protein 126 98.0 3.7E-06 1.3E-10 67.3 3.4 52 138-195 13-66 (78)
42 2ckl_A Polycomb group ring fin 98.0 1.3E-06 4.4E-11 74.7 0.4 46 139-192 14-61 (108)
43 2xeu_A Ring finger protein 4; 97.9 5.1E-07 1.7E-11 69.2 -2.0 53 139-197 2-60 (64)
44 2ea6_A Ring finger protein 4; 97.9 1.4E-06 4.7E-11 67.8 0.3 50 137-192 12-67 (69)
45 1wgm_A Ubiquitin conjugation f 97.9 3.4E-06 1.2E-10 70.9 2.7 49 138-194 20-70 (98)
46 2ecm_A Ring finger and CHY zin 97.9 3.4E-06 1.2E-10 62.6 2.3 49 138-192 3-54 (55)
47 2kiz_A E3 ubiquitin-protein li 97.9 5.3E-06 1.8E-10 64.7 2.4 50 138-193 12-63 (69)
48 1iym_A EL5; ring-H2 finger, ub 97.8 7.5E-06 2.6E-10 60.7 2.6 47 139-191 4-53 (55)
49 2l0b_A E3 ubiquitin-protein li 97.8 4.9E-06 1.7E-10 68.9 1.6 50 138-193 38-89 (91)
50 2ecn_A Ring finger protein 141 97.7 4.1E-06 1.4E-10 65.5 0.2 47 138-193 13-60 (70)
51 4ic3_A E3 ubiquitin-protein li 97.7 9.9E-06 3.4E-10 64.3 2.1 42 140-193 24-67 (74)
52 2f42_A STIP1 homology and U-bo 97.7 8E-06 2.7E-10 76.0 1.6 49 138-194 104-154 (179)
53 2ckl_B Ubiquitin ligase protei 97.7 7.9E-06 2.7E-10 75.3 1.2 47 139-192 53-101 (165)
54 1chc_A Equine herpes virus-1 r 97.7 8.4E-06 2.9E-10 63.3 1.2 45 140-192 5-51 (68)
55 1x4j_A Ring finger protein 38; 97.6 1.1E-05 3.6E-10 64.1 0.8 50 138-193 21-72 (75)
56 2ep4_A Ring finger protein 24; 97.6 1.7E-05 5.7E-10 62.7 1.4 49 138-192 13-63 (74)
57 2ecg_A Baculoviral IAP repeat- 97.6 1.9E-05 6.6E-10 62.7 1.4 43 140-193 25-68 (75)
58 1v87_A Deltex protein 2; ring- 97.6 2.1E-05 7.2E-10 67.6 1.8 51 140-192 25-93 (114)
59 2yho_A E3 ubiquitin-protein li 97.4 5.4E-05 1.8E-09 60.9 2.1 42 140-193 18-61 (79)
60 2ea5_A Cell growth regulator w 97.4 0.00013 4.6E-09 56.8 3.9 45 138-193 13-58 (68)
61 2ct7_A Ring finger protein 31; 97.3 6.2E-05 2.1E-09 61.5 1.3 48 293-346 26-74 (86)
62 2ecl_A Ring-box protein 2; RNF 97.2 0.00018 6E-09 58.0 3.3 50 138-193 13-76 (81)
63 2vje_A E3 ubiquitin-protein li 97.2 5.9E-05 2E-09 58.0 0.2 47 138-192 6-56 (64)
64 2y1n_A E3 ubiquitin-protein li 97.2 8.7E-05 3E-09 77.0 1.1 47 140-193 332-379 (389)
65 2vje_B MDM4 protein; proto-onc 97.1 9.2E-05 3.1E-09 56.7 0.4 46 139-192 6-55 (63)
66 3t6p_A Baculoviral IAP repeat- 97.0 0.00025 8.6E-09 72.9 3.2 41 140-192 295-337 (345)
67 4ap4_A E3 ubiquitin ligase RNF 97.0 6.5E-05 2.2E-09 65.9 -1.5 55 137-197 69-129 (133)
68 2jmo_A Parkin; IBR, E3 ligase, 96.7 0.00041 1.4E-08 55.8 1.4 40 292-331 25-70 (80)
69 3dpl_R Ring-box protein 1; ubi 96.7 0.00066 2.3E-08 57.7 2.2 49 138-192 35-100 (106)
70 2d8s_A Cellular modulator of i 96.3 0.002 7E-08 51.7 3.1 52 138-193 13-70 (80)
71 4a0k_B E3 ubiquitin-protein li 95.8 0.0017 5.9E-08 56.0 0.4 48 139-192 47-111 (117)
72 1wd2_A Ariadne-1 protein homol 95.1 0.0077 2.6E-07 45.4 1.9 37 222-262 5-44 (60)
73 1v92_A NSFL1 cofactor P47; 3-h 94.7 0.056 1.9E-06 38.1 5.3 41 78-118 5-45 (46)
74 2bay_A PRE-mRNA splicing facto 94.4 0.0056 1.9E-07 46.3 -0.5 47 140-195 3-52 (61)
75 2dal_A Protein KIAA0794; FAS a 93.2 0.15 5.1E-06 38.5 5.5 42 77-118 14-55 (62)
76 3k1l_B Fancl; UBC, ring, RWD, 92.9 0.13 4.6E-06 52.0 6.1 55 138-194 306-374 (381)
77 2jun_A Midline-1; B-BOX, TRIM, 92.7 0.0099 3.4E-07 49.5 -2.0 69 244-327 17-87 (101)
78 2jun_A Midline-1; B-BOX, TRIM, 91.3 0.051 1.7E-06 45.1 0.8 31 139-170 2-34 (101)
79 2dam_A ETEA protein; KIAA0887, 90.5 0.41 1.4E-05 36.7 5.2 41 78-118 18-59 (67)
80 2dzl_A Protein FAM100B; UBA-li 90.0 0.43 1.5E-05 36.5 4.9 39 80-118 19-57 (66)
81 1wj7_A Hypothetical protein (R 89.7 0.5 1.7E-05 39.3 5.4 41 78-118 39-79 (104)
82 2ct0_A Non-SMC element 1 homol 89.3 0.26 9E-06 38.6 3.3 50 138-192 13-63 (74)
83 3vk6_A E3 ubiquitin-protein li 88.8 0.097 3.3E-06 43.2 0.5 44 142-191 3-47 (101)
84 3e21_A HFAF1, FAS-associated f 86.0 0.86 2.9E-05 32.0 4.0 38 78-115 5-43 (45)
85 3lrq_A E3 ubiquitin-protein li 85.4 0.21 7.3E-06 41.3 0.7 35 293-333 23-57 (100)
86 3vk6_A E3 ubiquitin-protein li 83.6 0.66 2.2E-05 38.3 2.8 47 225-305 3-50 (101)
87 1g25_A CDK-activating kinase a 83.4 0.44 1.5E-05 35.7 1.7 32 248-304 24-55 (65)
88 1z96_A DNA-damage, UBA-domain 83.4 1.9 6.6E-05 28.9 4.8 35 79-114 5-39 (40)
89 2jne_A Hypothetical protein YF 82.4 0.34 1.2E-05 39.5 0.7 50 293-345 33-87 (101)
90 2di0_A Activating signal coint 81.8 3.1 0.0001 32.1 5.8 41 77-117 12-53 (71)
91 2jrp_A Putative cytoplasmic pr 81.4 0.45 1.5E-05 37.8 1.0 50 293-345 3-57 (81)
92 1x4j_A Ring finger protein 38; 80.9 0.83 2.8E-05 35.2 2.5 37 245-307 38-75 (75)
93 2ysl_A Tripartite motif-contai 78.8 0.82 2.8E-05 34.9 1.8 32 293-331 21-52 (73)
94 2ckl_B Ubiquitin ligase protei 78.7 0.57 2E-05 42.3 1.0 34 293-332 55-88 (165)
95 1bor_A Transcription factor PM 78.1 1.2 3.9E-05 32.4 2.3 27 249-304 23-49 (56)
96 2ysj_A Tripartite motif-contai 77.8 0.59 2E-05 34.7 0.7 33 293-332 21-53 (63)
97 1vyx_A ORF K3, K3RING; zinc-bi 77.7 0.61 2.1E-05 34.8 0.7 48 139-192 5-58 (60)
98 2djb_A Polycomb group ring fin 77.3 0.59 2E-05 35.8 0.5 34 293-332 16-49 (72)
99 4ayc_A E3 ubiquitin-protein li 76.6 0.89 3E-05 39.8 1.6 34 293-333 54-87 (138)
100 1pft_A TFIIB, PFTFIIBN; N-term 76.4 1.9 6.6E-05 30.6 3.1 29 292-321 5-34 (50)
101 3l11_A E3 ubiquitin-protein li 75.6 1.3 4.4E-05 37.2 2.3 34 293-333 16-49 (115)
102 1vq8_Z 50S ribosomal protein L 75.1 1 3.6E-05 35.9 1.5 30 292-322 27-56 (83)
103 3ddt_A E3 ubiquitin-protein li 74.6 1.6 5.5E-05 30.6 2.2 26 293-326 7-33 (48)
104 2ecw_A Tripartite motif-contai 74.2 0.95 3.2E-05 35.4 1.0 33 293-332 20-52 (85)
105 2jr6_A UPF0434 protein NMA0874 74.1 1.6 5.6E-05 33.4 2.3 29 292-321 8-36 (68)
106 2did_A Tripartite motif protei 74.0 1.8 6.2E-05 31.0 2.4 27 293-327 9-35 (53)
107 2csv_A Tripartite motif protei 74.0 1.5 5.3E-05 33.6 2.2 32 293-334 19-50 (72)
108 2ckl_A Polycomb group ring fin 73.9 0.88 3E-05 37.9 0.8 35 293-333 16-50 (108)
109 3fl2_A E3 ubiquitin-protein li 73.0 0.95 3.3E-05 38.7 0.8 33 293-332 53-85 (124)
110 1t1h_A Gspef-atpub14, armadill 72.2 1.3 4.4E-05 34.3 1.4 33 293-332 9-41 (78)
111 1e4u_A Transcriptional repress 72.1 0.97 3.3E-05 35.6 0.6 35 293-330 12-46 (78)
112 2yvr_A Transcription intermedi 71.7 2.1 7.1E-05 30.3 2.2 32 293-334 7-39 (50)
113 2y43_A E3 ubiquitin-protein li 71.3 1.1 3.7E-05 36.6 0.7 35 293-333 23-57 (99)
114 2ecy_A TNF receptor-associated 71.0 1.3 4.3E-05 33.2 1.0 32 293-331 16-47 (66)
115 2cs3_A Protein C14ORF4, MY039 70.3 1.6 5.5E-05 34.2 1.4 48 136-184 11-63 (93)
116 2k4x_A 30S ribosomal protein S 70.1 1.1 3.8E-05 32.8 0.5 29 292-321 18-46 (55)
117 2yur_A Retinoblastoma-binding 70.1 1.1 3.7E-05 34.6 0.4 34 293-332 16-49 (74)
118 1ify_A HHR23A, UV excision rep 70.0 8.4 0.00029 27.3 5.1 38 78-116 8-45 (49)
119 2yrg_A Tripartite motif-contai 69.8 2.6 9E-05 31.0 2.5 27 293-327 15-41 (59)
120 2g3q_A Protein YBL047C; endocy 69.1 7.8 0.00027 26.4 4.7 36 80-116 6-41 (43)
121 2d8t_A Dactylidin, ring finger 68.7 1.7 5.8E-05 33.0 1.3 34 293-333 16-49 (71)
122 1jm7_A BRCA1, breast cancer ty 68.7 1.2 4.1E-05 37.0 0.5 34 293-333 22-55 (112)
123 1vg5_A RSGI RUH-014, rhomboid 68.6 5.7 0.0002 30.8 4.3 37 80-117 31-67 (73)
124 2egp_A Tripartite motif-contai 68.2 1.3 4.4E-05 34.3 0.5 33 293-332 13-45 (79)
125 2kiz_A E3 ubiquitin-protein li 68.1 1.4 4.9E-05 33.1 0.7 37 293-333 15-51 (69)
126 4ic3_A E3 ubiquitin-protein li 67.6 1.6 5.3E-05 33.7 0.9 26 249-304 41-67 (74)
127 2ecm_A Ring finger and CHY zin 67.5 1.4 4.8E-05 31.4 0.6 37 293-332 6-42 (55)
128 2ct2_A Tripartite motif protei 67.4 1.2 4E-05 35.3 0.1 38 293-333 16-53 (88)
129 1chc_A Equine herpes virus-1 r 67.2 1.5 5.2E-05 32.8 0.7 33 293-331 6-38 (68)
130 2d8u_A Ubiquitin ligase TRIM63 66.8 2.6 8.9E-05 31.4 2.0 27 293-327 9-36 (64)
131 3ng2_A RNF4, snurf, ring finge 66.7 1.1 3.8E-05 33.9 -0.2 39 293-332 11-50 (71)
132 2ecj_A Tripartite motif-contai 66.1 1.4 4.7E-05 31.8 0.3 32 293-331 16-47 (58)
133 3j20_Y 30S ribosomal protein S 66.0 2.4 8E-05 30.4 1.5 28 292-320 19-46 (50)
134 1fre_A Nuclear factor XNF7; zi 65.7 2.5 8.4E-05 28.6 1.5 27 293-327 4-30 (42)
135 1iym_A EL5; ring-H2 finger, ub 65.2 2.1 7.1E-05 30.5 1.1 38 293-333 6-43 (55)
136 2csy_A Zinc finger protein 183 65.1 1.7 5.9E-05 33.9 0.7 33 293-332 16-48 (81)
137 3bq3_A Defective in cullin ned 65.0 4.6 0.00016 39.6 3.8 43 77-119 14-56 (270)
138 2ecn_A Ring finger protein 141 64.9 1.8 6.1E-05 32.7 0.7 31 293-331 16-46 (70)
139 3ztg_A E3 ubiquitin-protein li 63.0 1.5 5.3E-05 35.0 0.0 33 293-331 14-46 (92)
140 1veg_A NEDD8 ultimate buster-1 62.9 8.6 0.00029 30.6 4.4 37 81-118 32-68 (83)
141 1z6u_A NP95-like ring finger p 62.2 2.1 7.2E-05 38.1 0.8 34 293-333 79-112 (150)
142 2xeu_A Ring finger protein 4; 62.1 1.6 5.3E-05 32.1 -0.1 39 293-332 4-43 (64)
143 2egm_A Tripartite motif-contai 61.9 3.3 0.00011 30.3 1.7 27 293-327 19-45 (57)
144 1jm7_B BARD1, BRCA1-associated 61.6 2.7 9.1E-05 35.5 1.3 33 293-331 23-55 (117)
145 2y1n_A E3 ubiquitin-protein li 60.8 7.8 0.00027 40.0 4.8 32 248-304 348-379 (389)
146 2ea6_A Ring finger protein 4; 60.7 1.7 5.9E-05 32.4 -0.1 39 293-332 16-55 (69)
147 3knv_A TNF receptor-associated 60.3 2.3 7.7E-05 37.5 0.6 33 293-332 32-64 (141)
148 2dak_A Ubiquitin carboxyl-term 59.9 11 0.00039 28.0 4.4 37 80-117 11-47 (63)
149 2ecv_A Tripartite motif-contai 59.3 2.1 7.3E-05 33.3 0.2 33 293-332 20-52 (85)
150 1weo_A Cellulose synthase, cat 59.3 4.9 0.00017 32.2 2.3 47 139-191 15-68 (93)
151 2ep4_A Ring finger protein 24; 58.3 2 6.8E-05 32.8 -0.1 37 293-333 16-52 (74)
152 1wr1_B Ubiquitin-like protein 57.6 21 0.00071 26.3 5.4 44 75-118 14-57 (58)
153 2d8v_A Zinc finger FYVE domain 57.4 4.6 0.00016 30.5 1.7 30 138-170 6-36 (67)
154 2l0b_A E3 ubiquitin-protein li 56.8 1.9 6.6E-05 34.6 -0.4 37 293-333 41-77 (91)
155 3hct_A TNF receptor-associated 56.3 2.9 0.0001 35.3 0.6 34 293-333 19-52 (118)
156 2js4_A UPF0434 protein BB2007; 56.1 6.5 0.00022 30.2 2.5 28 293-321 9-36 (70)
157 2hf1_A Tetraacyldisaccharide-1 55.9 6.1 0.00021 30.2 2.3 28 293-321 9-36 (68)
158 2dja_A Midline-2; tripartite m 55.3 6.1 0.00021 31.0 2.3 27 293-327 19-46 (84)
159 2knz_A Ubiquilin-4; cytoplasm, 54.8 22 0.00076 25.4 5.1 41 76-117 9-50 (53)
160 1rmd_A RAG1; V(D)J recombinati 53.9 3.3 0.00011 34.7 0.6 33 293-332 24-56 (116)
161 1deq_A Fibrinogen (alpha chain 53.5 93 0.0032 31.6 11.0 26 450-475 109-134 (390)
162 2pk7_A Uncharacterized protein 53.4 7.3 0.00025 29.8 2.4 28 293-321 9-36 (69)
163 2c2l_A CHIP, carboxy terminus 53.2 8.2 0.00028 37.2 3.4 15 246-260 222-236 (281)
164 2jy5_A Ubiquilin-1; UBA, alter 53.1 23 0.00078 25.3 4.9 39 79-118 13-52 (52)
165 3h0g_I DNA-directed RNA polyme 53.0 7.5 0.00026 32.7 2.7 30 291-321 3-36 (113)
166 1odh_A MGCM1; transcription fa 52.0 12 0.0004 33.4 3.7 35 263-318 96-130 (174)
167 1wiv_A UBP14, ubiquitin-specif 50.8 23 0.00079 27.3 4.9 37 81-118 32-68 (73)
168 1wji_A Tudor domain containing 50.6 16 0.00055 27.3 3.9 37 80-117 11-47 (63)
169 1v87_A Deltex protein 2; ring- 50.5 3.4 0.00012 34.4 0.1 16 316-331 60-75 (114)
170 2jp7_A MRNA export factor MEX6 49.9 36 0.0012 24.9 5.5 41 76-116 4-44 (57)
171 2jny_A Uncharacterized BCR; st 48.3 9.6 0.00033 29.0 2.3 28 293-321 11-38 (67)
172 3lqh_A Histone-lysine N-methyl 48.0 10 0.00034 34.9 2.8 67 141-210 3-82 (183)
173 3ghg_A Fibrinogen alpha chain; 47.8 96 0.0033 32.8 10.4 16 458-473 114-129 (562)
174 1wfl_A Zinc finger protein 216 47.7 6 0.0002 30.7 1.0 27 293-325 26-52 (74)
175 2ecl_A Ring-box protein 2; RNF 47.6 6 0.00021 30.9 1.1 37 294-333 28-64 (81)
176 3qt1_I DNA-directed RNA polyme 47.6 7.1 0.00024 34.0 1.7 30 291-321 23-56 (133)
177 2bwb_A Ubiquitin-like protein 47.6 39 0.0013 23.4 5.2 40 76-116 5-45 (46)
178 2ect_A Ring finger protein 126 46.5 14 0.00047 28.2 3.1 35 293-331 16-50 (78)
179 1oai_A Nuclear RNA export fact 46.4 43 0.0015 24.6 5.6 39 77-115 6-44 (59)
180 2ayu_A Nucleosome assembly pro 46.1 1.1 3.6E-05 46.9 -4.5 8 8-15 359-366 (417)
181 3nw0_A Non-structural maintena 45.5 7.3 0.00025 37.4 1.6 51 139-194 179-230 (238)
182 1wfh_A Zinc finger (AN1-like) 44.4 7.6 0.00026 29.2 1.2 28 292-325 15-42 (64)
183 2dah_A Ubiquilin-3; UBA domain 44.3 27 0.00092 25.2 4.1 39 79-118 10-49 (54)
184 3hcs_A TNF receptor-associated 43.8 5.9 0.0002 35.6 0.6 33 293-332 19-51 (170)
185 2cpw_A CBL-interacting protein 43.8 33 0.0011 25.6 4.7 36 81-117 22-58 (64)
186 2dkl_A Trinucleotide repeat co 43.4 35 0.0012 27.1 5.0 39 79-118 22-60 (85)
187 1deq_A Fibrinogen (alpha chain 43.3 1.6E+02 0.0056 29.8 10.9 34 425-462 158-191 (390)
188 2dai_A Ubadc1, ubiquitin assoc 42.1 38 0.0013 26.8 5.0 36 81-117 32-67 (83)
189 3bvo_A CO-chaperone protein HS 41.2 2.2E+02 0.0075 26.3 15.0 15 503-517 191-205 (207)
190 3m7n_A Putative uncharacterize 41.0 13 0.00045 33.9 2.5 24 293-319 141-164 (179)
191 1vej_A Riken cDNA 4931431F19; 40.9 46 0.0016 25.7 5.2 39 78-117 29-68 (74)
192 4a0k_B E3 ubiquitin-protein li 40.9 5.7 0.0002 33.8 0.0 26 306-333 75-100 (117)
193 1wg2_A Zinc finger (AN1-like) 40.7 8.5 0.00029 29.0 0.9 28 292-325 15-42 (64)
194 3t6p_A Baculoviral IAP repeat- 40.2 19 0.00064 36.5 3.7 26 249-304 312-338 (345)
195 3t7l_A Zinc finger FYVE domain 39.1 24 0.00082 28.3 3.5 36 135-170 15-52 (90)
196 1twf_I B12.6, DNA-directed RNA 39.0 11 0.00037 32.2 1.5 29 292-321 4-36 (122)
197 2xzf_A Formamidopyrimidine-DNA 38.4 12 0.00042 36.5 1.9 26 293-319 243-270 (271)
198 1ee8_A MUTM (FPG) protein; bet 38.4 14 0.00048 36.0 2.4 26 293-319 236-263 (266)
199 2ko5_A Ring finger protein Z; 38.2 11 0.00039 30.5 1.3 46 138-194 26-74 (99)
200 3u6p_A Formamidopyrimidine-DNA 37.5 13 0.00044 36.4 1.9 25 293-318 246-272 (273)
201 1dv0_A DNA repair protein HHR2 37.3 14 0.00048 25.9 1.6 37 80-117 6-42 (47)
202 2jrp_A Putative cytoplasmic pr 37.1 9.6 0.00033 30.1 0.8 29 294-331 33-63 (81)
203 1dl6_A Transcription factor II 36.9 23 0.00077 26.0 2.7 25 293-318 12-37 (58)
204 1k82_A Formamidopyrimidine-DNA 36.6 14 0.00046 36.2 1.9 25 293-318 241-267 (268)
205 1k3x_A Endonuclease VIII; hydr 36.5 14 0.00047 36.0 1.9 25 293-318 235-261 (262)
206 2akl_A PHNA-like protein PA012 35.8 17 0.00059 31.2 2.1 32 288-321 23-54 (138)
207 3ghg_A Fibrinogen alpha chain; 35.4 4.2E+02 0.014 28.1 12.8 28 450-478 131-158 (562)
208 1wff_A Riken cDNA 2810002D23 p 35.0 13 0.00046 29.5 1.3 29 292-325 25-53 (85)
209 2yu4_A E3 SUMO-protein ligase 34.0 12 0.0004 30.2 0.8 33 293-331 8-40 (94)
210 1twf_L ABC10-alpha, DNA-direct 33.8 13 0.00045 28.5 1.0 25 293-319 29-53 (70)
211 4esj_A Type-2 restriction enzy 33.7 26 0.0009 33.3 3.2 36 284-321 27-66 (257)
212 1wfp_A Zinc finger (AN1-like) 33.1 13 0.00044 28.8 0.9 28 292-325 25-52 (74)
213 3dpl_R Ring-box protein 1; ubi 32.4 11 0.00036 31.4 0.3 26 306-333 64-89 (106)
214 2l2d_A OTU domain-containing p 32.2 98 0.0033 23.0 5.4 37 78-114 17-53 (73)
215 1z2q_A LM5-1; membrane protein 31.5 46 0.0016 26.1 4.0 37 134-170 15-53 (84)
216 1x4w_A Hypothetical protein FL 30.7 12 0.00041 28.4 0.3 31 292-325 15-45 (67)
217 2ekk_A UBA domain from E3 ubiq 30.4 75 0.0026 21.8 4.5 36 80-117 11-46 (47)
218 3k9o_A Ubiquitin-conjugating e 30.1 56 0.0019 30.1 4.9 37 79-116 164-200 (201)
219 1x4v_A Hypothetical protein LO 30.1 22 0.00074 26.7 1.6 31 223-260 12-43 (63)
220 2f42_A STIP1 homology and U-bo 30.1 51 0.0017 30.0 4.5 30 221-259 104-133 (179)
221 2dag_A Ubiquitin carboxyl-term 29.9 58 0.002 25.0 4.2 37 80-117 11-48 (74)
222 2yw8_A RUN and FYVE domain-con 29.8 33 0.0011 26.8 2.8 36 135-170 14-51 (82)
223 3e46_A Ubiquitin-conjugating e 29.0 64 0.0022 31.1 5.3 37 79-116 216-252 (253)
224 1wii_A Hypothetical UPF0222 pr 28.8 21 0.00071 28.5 1.4 28 293-321 24-57 (85)
225 1z60_A TFIIH basal transcripti 28.6 17 0.00058 26.9 0.8 35 224-265 16-51 (59)
226 1f5n_A Interferon-induced guan 28.4 3.9E+02 0.014 28.8 12.0 68 449-521 514-581 (592)
227 3u5c_f 40S ribosomal protein S 28.2 23 0.00079 31.3 1.8 33 223-257 118-151 (152)
228 1joc_A EEA1, early endosomal a 28.0 31 0.0011 29.4 2.6 40 286-328 62-102 (125)
229 3htk_C E3 SUMO-protein ligase 27.3 23 0.00077 34.5 1.7 33 293-331 182-214 (267)
230 2v71_A Nuclear distribution pr 27.0 3.6E+02 0.012 24.6 12.0 25 450-475 130-154 (189)
231 3h0g_I DNA-directed RNA polyme 26.0 39 0.0013 28.2 2.7 31 222-254 3-36 (113)
232 1joc_A EEA1, early endosomal a 25.5 35 0.0012 29.1 2.4 35 136-170 65-101 (125)
233 2xzm_9 RPS31E; ribosome, trans 25.3 27 0.00092 32.2 1.7 28 293-322 114-142 (189)
234 1nfn_A Apolipoprotein E3; lipi 24.3 2E+02 0.0067 26.2 7.5 30 487-516 130-159 (191)
235 1vek_A UBP14, ubiquitin-specif 24.1 88 0.003 24.6 4.4 36 81-117 32-68 (84)
236 2cwb_A Chimera of immunoglobul 24.0 86 0.0029 26.0 4.4 41 78-118 66-106 (108)
237 1whc_A RSGI RUH-027, UBA/UBX 3 23.9 68 0.0023 23.8 3.5 36 81-117 12-48 (64)
238 1nfn_A Apolipoprotein E3; lipi 23.8 1.8E+02 0.0063 26.4 7.2 69 452-520 108-178 (191)
239 2kpi_A Uncharacterized protein 23.7 45 0.0015 24.2 2.3 26 293-320 11-37 (56)
240 1ufz_A Hypothetical protein BA 23.5 1.7E+02 0.006 23.0 5.8 48 69-117 26-75 (83)
241 1wfe_A Riken cDNA 2310008M20 p 23.3 36 0.0012 27.1 1.9 35 222-263 24-60 (86)
242 3mjh_B Early endosome antigen 23.0 25 0.00085 22.9 0.7 12 139-150 4-15 (34)
243 1y02_A CARP2, FYVE-ring finger 22.8 35 0.0012 29.0 1.9 35 136-170 15-51 (120)
244 2ysm_A Myeloid/lymphoid or mix 22.1 3E+02 0.01 22.2 7.7 47 138-184 5-53 (111)
245 1k81_A EIF-2-beta, probable tr 22.0 44 0.0015 21.9 1.8 26 294-320 2-30 (36)
246 1x4u_A Zinc finger, FYVE domai 21.8 77 0.0026 24.7 3.6 36 135-170 9-46 (84)
247 3j21_g 50S ribosomal protein L 21.4 26 0.00088 25.1 0.6 24 292-320 14-37 (51)
248 3v2d_5 50S ribosomal protein L 21.2 33 0.0011 25.4 1.2 22 291-318 29-50 (60)
249 1dvp_A HRS, hepatocyte growth 21.0 38 0.0013 31.7 1.9 33 293-328 162-194 (220)
250 3h0g_L DNA-directed RNA polyme 20.9 36 0.0012 25.5 1.3 27 293-321 22-48 (63)
251 2cp8_A NEXT to BRCA1 gene 1 pr 20.8 1.3E+02 0.0044 21.7 4.2 37 79-115 10-46 (54)
252 3u5c_f 40S ribosomal protein S 20.5 37 0.0013 30.0 1.6 30 293-323 119-150 (152)
253 2lbc_A Ubiquitin carboxyl-term 20.2 1.2E+02 0.004 25.6 4.7 36 81-117 81-116 (126)
254 3s84_A Apolipoprotein A-IV; fo 20.2 5.8E+02 0.02 24.4 18.7 30 449-478 153-182 (273)
255 1wfk_A Zinc finger, FYVE domai 20.1 40 0.0014 26.8 1.6 33 293-328 10-42 (88)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.82 E-value=5.8e-22 Score=151.65 Aligned_cols=57 Identities=60% Similarity=1.448 Sum_probs=53.3
Q ss_pred HHHhcCCCCCCCCcceeecCCCCceEeCCC--CcchhhhhhhcCccCCCCCCCCcccCCcchh
Q 008581 287 WILANSKPCPKCKRPIEKNQGCMHMTCSPP--CKFEFCWLCLGAWSDHGERTGGFYACNRYET 347 (561)
Q Consensus 287 wi~~ntK~CP~C~~~IEK~~GCnhm~C~~~--C~~~FCw~C~~~w~~h~~~~g~~y~C~~~~~ 347 (561)
||.+++|+||+|+.+|||++|||||+|+ . |+++|||+|+++|..|+. .+|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~-~~~C~~~FCw~C~~~~~~~~~---~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCR-NQNCKAEFCWVCLGPWEPHGS---AWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCC-SSGGGSCCSSSSCSCSGGGGT---SSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEEC-CCCcCCEEeeCcCCCcccCCC---ccccCCCccc
Confidence 7888999999999999999999999998 7 999999999999999985 6899999963
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=9.9e-14 Score=116.66 Aligned_cols=82 Identities=18% Similarity=0.564 Sum_probs=69.4
Q ss_pred CCccccccccccccCCCeeec-cCCCccccccce------eccCCcccccccCCCCCCCc--chhhHHhhhCChHHHHHH
Q 008581 138 ARELTCGICFDTYSCDKVVSA-ACGHPFCRACWR------VNDGPGCLMLRCPDPSCCAA--VGQDMIDMLASDEDKKKY 208 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~------i~~g~~~~~i~CP~~~C~~~--v~~~~i~~ll~~e~~~ky 208 (561)
...++|+||++.++...++.+ +|||.||.+||+ |.+|. ...++||.++|+.. +++..++++++++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 347899999999876666665 699999999999 44553 24799999999999 999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 008581 209 SRYLLRSYVEDN 220 (561)
Q Consensus 209 ~~~l~~~~v~~~ 220 (561)
.+++++.|++++
T Consensus 82 ~~~~~~~~v~~~ 93 (94)
T 1wim_A 82 KKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHSSCSSC
T ss_pred HHHHHHhhhccC
Confidence 999999888654
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.29 E-value=8.9e-14 Score=114.84 Aligned_cols=78 Identities=21% Similarity=0.556 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceecCCCCCCCeeecccCCCCceeEe-cCCcccccccCccc---CCCCCchhHHHHHHH
Q 008581 202 DEDKKKYSRYLLRSYVEDNRKTKWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEA---HRPVDCGTVAKWILK 277 (561)
Q Consensus 202 ~e~~~ky~~~l~~~~v~~~~~~~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~---H~p~~C~~~~~~~~k 277 (561)
++++++|.+++++.+|..+++++||| +|+.++...+ ....|.| .|++.||+.|+.+| |.|++|.++++|+.+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~--~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYER--EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCC--SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecC--CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 34567888889999999999999999 7999887653 3567999 79999999999999 999999999999998
Q ss_pred hHhhhH
Q 008581 278 NCAESE 283 (561)
Q Consensus 278 ~~~~~~ 283 (561)
+..+++
T Consensus 80 n~~~~~ 85 (86)
T 2ct7_A 80 NSGPSS 85 (86)
T ss_dssp HTCSSC
T ss_pred Cccccc
Confidence 766543
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.09 E-value=1.6e-12 Score=105.62 Aligned_cols=69 Identities=28% Similarity=0.632 Sum_probs=59.9
Q ss_pred hCChHHHHHHHHHHHHHHHhcCCCceecCCCCCCCeeecccCCCCceeEe------cCCcccccccCcccCCCCCchhH
Q 008581 199 LASDEDKKKYSRYLLRSYVEDNRKTKWCPAPGCEHAIDFAAGSGNFDVSC------LCSYNFCWNCTEEAHRPVDCGTV 271 (561)
Q Consensus 199 ll~~e~~~ky~~~l~~~~v~~~~~~~~CP~~~C~~~i~~~~~~~~~~v~C------~C~~~fC~~C~~~~H~p~~C~~~ 271 (561)
+|+++++++|++++++++|+.+. .+|||+|+|+++|...+ ....|.| .|++.||+.|+.+||. .+|...
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 46677889999999999998886 99999999999998753 4566899 6999999999999999 999753
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=1.3e-11 Score=109.70 Aligned_cols=116 Identities=29% Similarity=0.671 Sum_probs=77.6
Q ss_pred CCccccccccccccC-----CCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhHHhhhCChHHHHHHHHH
Q 008581 138 ARELTCGICFDTYSC-----DKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMIDMLASDEDKKKYSRY 211 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~ky~~~ 211 (561)
.+.++|+||++.+.. ..++.++|||.||..||. |... ...||. |+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~--Cr~~~~~~~l~~l~i---------- 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPT--CRKKINHKRYHPIYI---------- 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTT--TCCBCTTTCEEECBC----------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCC--CCCcCcccccccccc----------
Confidence 346899999998731 223889999999999999 5433 248998 999887655433211
Q ss_pred HHHHHHhcCCCceecCCCCCCCeeecccCCCCceeEecCCcccccccCcccCCCCCchhHHHHHHHhHhhhHhHHHHHhc
Q 008581 212 LLRSYVEDNRKTKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILAN 291 (561)
Q Consensus 212 l~~~~v~~~~~~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~~~~~wi~~n 291 (561)
+.....||- |...+..........+...||+.||..|... |+. +
T Consensus 69 --------~~~~~~C~i--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~--------------~ 112 (133)
T 4ap4_A 69 --------GSGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLK--------------N 112 (133)
T ss_dssp --------SSSSCBCTT--TCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHH--------------H
T ss_pred --------CCCCCCCCC--CCCccccccccCcceEeCCCCChhhHHHHHH------------HHH--------------c
Confidence 233456876 7655432211222335569999999999644 321 1
Q ss_pred CCCCCCCCcceeec
Q 008581 292 SKPCPKCKRPIEKN 305 (561)
Q Consensus 292 tK~CP~C~~~IEK~ 305 (561)
.+.||.|+..|.++
T Consensus 113 ~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 113 ANTCPTCRKKINHK 126 (133)
T ss_dssp CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChh
Confidence 27999999999864
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.52 E-value=9.5e-09 Score=95.59 Aligned_cols=81 Identities=26% Similarity=0.556 Sum_probs=56.5
Q ss_pred CCCccccccccccccCCCeeeccCCCccccccce-e-ccCCcccccccCCCCCCCcchhhHHhhhCChHHHHHHHHHHHH
Q 008581 137 NARELTCGICFDTYSCDKVVSAACGHPFCRACWR-V-NDGPGCLMLRCPDPSCCAAVGQDMIDMLASDEDKKKYSRYLLR 214 (561)
Q Consensus 137 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i-~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~ky~~~l~~ 214 (561)
....+.|+||++.+ .+++.++|||.||..||. + ..+ ...||. |+..+....+ .....++
T Consensus 15 ~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~----~~~CP~--Cr~~~~~~~~---~~~~~~~-------- 75 (170)
T 3hcs_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA----GHKCPV--DNEILLENQL---FPDNFAK-------- 75 (170)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH----CSBCTT--TCCBCCGGGC---EECHHHH--------
T ss_pred CCCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC----CCCCCC--CccCcchhhh---hhhHHHH--------
Confidence 45579999999987 788889999999999999 3 322 248998 9988866432 1211111
Q ss_pred HHHhcCCCceecCCCCCCCeeecc
Q 008581 215 SYVEDNRKTKWCPAPGCEHAIDFA 238 (561)
Q Consensus 215 ~~v~~~~~~~~CP~~~C~~~i~~~ 238 (561)
..+. .-.+.||+.+|+..+...
T Consensus 76 ~~i~--~l~v~C~n~GC~~~~~~~ 97 (170)
T 3hcs_A 76 REIL--SLMVKCPNEGCLHKMELR 97 (170)
T ss_dssp HHHH--TSEEECCSTTCCCEEEGG
T ss_pred HHHh--hcccCCCCCCCCceecHh
Confidence 1111 245799999999877654
No 7
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.36 E-value=1.2e-07 Score=82.42 Aligned_cols=79 Identities=23% Similarity=0.472 Sum_probs=55.0
Q ss_pred ccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhHHhhhCChHHHHHHHHHHHHHHHh
Q 008581 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMIDMLASDEDKKKYSRYLLRSYVE 218 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~ky~~~l~~~~v~ 218 (561)
.+.|+||++.+ .+++.++|||.||..|+. |.... ...||. |+..+....+... ...+.+ ++.
T Consensus 23 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~--Cr~~~~~~~~~~~-~~~l~~-----~i~---- 85 (116)
T 1rmd_A 23 SISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM---GSYCPS--CRYPCFPTDLESP-VKSFLN-----ILN---- 85 (116)
T ss_dssp HTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---CSBCTT--TCCBCCGGGCBCC-CHHHHH-----HHH----
T ss_pred CCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC---cCcCCC--CCCCCCHhhcccc-HHHHHH-----HHH----
Confidence 67899999987 788889999999999999 43221 357998 9999876554322 111111 111
Q ss_pred cCCCceecCCCCCCCeeec
Q 008581 219 DNRKTKWCPAPGCEHAIDF 237 (561)
Q Consensus 219 ~~~~~~~CP~~~C~~~i~~ 237 (561)
....+||+.+|+..+..
T Consensus 86 --~l~v~C~~~gC~~~~~~ 102 (116)
T 1rmd_A 86 --SLMVKCPAQDCNEEVSL 102 (116)
T ss_dssp --HCEEECCSTTCCCEEEH
T ss_pred --HhcCCCCCCCCcchhhH
Confidence 12468999999987764
No 8
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.36 E-value=2.1e-07 Score=80.65 Aligned_cols=49 Identities=31% Similarity=0.792 Sum_probs=40.2
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
...+.|+||++.+ .+++.++|||.||..|+. |.... ...||. |+..+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEKA---SLCCPF--CRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCTT---TSBCTT--TCCBCHH
T ss_pred CCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhHC---cCCCCC--CCcccCc
Confidence 4478999999987 688899999999999999 44332 478998 9998864
No 9
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.2e-07 Score=73.64 Aligned_cols=50 Identities=22% Similarity=0.590 Sum_probs=40.2
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
...+.|+||++.+ .+++.++|||.||..|+. |... ....||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---~~~~CP~--Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLSS---SSPKCTA--CQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHTT---SSCCCTT--TCCCCCTT
T ss_pred CcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHHh---CcCCCCC--CCcCCChh
Confidence 4578999999987 677789999999999999 4432 2568998 99887654
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.35 E-value=9.3e-08 Score=79.36 Aligned_cols=47 Identities=32% Similarity=0.747 Sum_probs=38.6
Q ss_pred CCccccccccccccCCCeeecc-CCCccccccce--eccCCcccccccCCCCCCCcc
Q 008581 138 ARELTCGICFDTYSCDKVVSAA-CGHPFCRACWR--VNDGPGCLMLRCPDPSCCAAV 191 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~--i~~g~~~~~i~CP~~~C~~~v 191 (561)
...+.|+||++.+ .+++.++ |||.||..|+. +.... ...||. |+..+
T Consensus 11 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLESD---EHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHCT---TCCCTT--TCCSS
T ss_pred CcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhcC---CCcCcC--CCCcC
Confidence 4578999999988 6889999 99999999999 33322 478998 98876
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.7e-07 Score=72.70 Aligned_cols=55 Identities=29% Similarity=0.566 Sum_probs=43.7
Q ss_pred CCCCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhHHhh
Q 008581 136 SNARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMIDM 198 (561)
Q Consensus 136 ~~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i~~ 198 (561)
+....+.|+||++.+ .+++.++|||.||..|+. |... ...||. |+..+....+.+
T Consensus 11 ~~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~----~~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 11 PSLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL----GKRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SSSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC----SSBCSS--SCCBCCHHHHSC
T ss_pred cCCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC----CCcCcC--cCchhCHhhccC
Confidence 345578999999987 778889999999999999 5432 268998 999987766543
No 12
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.33 E-value=1.5e-07 Score=75.61 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=46.4
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhH-HhhhCChHHHHHH
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDM-IDMLASDEDKKKY 208 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~-i~~ll~~e~~~ky 208 (561)
...+.|+||++.+ .+++.++|||.||..|+. |-.. ....||. |+..+.... +.+......++.|
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~---~~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA---GHKTCPK--SQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT---TCCBCTT--TCCBCSSCCCEECTTTHHHHHHH
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH---CcCCCCC--CcCCCChhhCccCHHHHHHHHHH
Confidence 4478999999987 789999999999999999 4332 1568998 998886442 3344444445544
No 13
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.31 E-value=2.8e-07 Score=80.34 Aligned_cols=82 Identities=23% Similarity=0.514 Sum_probs=56.9
Q ss_pred CCCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhHHhhhCChHHHHHHHHHHHHH
Q 008581 137 NARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMIDMLASDEDKKKYSRYLLRS 215 (561)
Q Consensus 137 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~ky~~~l~~~ 215 (561)
....+.|+||++.+ .+++.++|||.||..|+. |.... ...||. |+..+....+ .....+ +.
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~--Cr~~~~~~~~---~~~~~l--------~~ 76 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA---GHKCPV--DNEILLENQL---FPDNFA--------KR 76 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH---CSBCTT--TCCBCCGGGC---EECHHH--------HH
T ss_pred CCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC---CCCCCC--CCCCcCHHhc---ccCHHH--------HH
Confidence 34578999999987 678889999999999999 43221 238998 9988866432 221111 11
Q ss_pred HHhcCCCceecCCCCCCCeeecc
Q 008581 216 YVEDNRKTKWCPAPGCEHAIDFA 238 (561)
Q Consensus 216 ~v~~~~~~~~CP~~~C~~~i~~~ 238 (561)
.+. .-.+.||+.+|...+.+.
T Consensus 77 ~i~--~l~v~C~n~gC~~~~~~~ 97 (118)
T 3hct_A 77 EIL--SLMVKCPNEGCLHKMELR 97 (118)
T ss_dssp HHH--TSEEECSSTTCCCEEEGG
T ss_pred HHc--cceeECCCCCCCCEEeeH
Confidence 122 235799999999888764
No 14
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.29 E-value=3.5e-07 Score=78.64 Aligned_cols=67 Identities=22% Similarity=0.492 Sum_probs=48.6
Q ss_pred ccccccccccccCCCeeeccCCCccccccce--eccCCcccccccCCCCCCCcchhhHHh-hhCChHHHHHHHHHH
Q 008581 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWR--VNDGPGCLMLRCPDPSCCAAVGQDMID-MLASDEDKKKYSRYL 212 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~--i~~g~~~~~i~CP~~~C~~~v~~~~i~-~ll~~e~~~ky~~~l 212 (561)
.+.|+||++.+ .+++.++|||.||..|+. +.... ....||. |+..+....+. +.....+++.+.+.+
T Consensus 21 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 21 ILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPL--CKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSSS--SSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhCC--CCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 57899999987 678889999999999999 33322 2578998 99988765443 333445666665544
No 15
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=2.6e-07 Score=73.05 Aligned_cols=53 Identities=34% Similarity=0.872 Sum_probs=41.3
Q ss_pred CCCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhh
Q 008581 137 NARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 137 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
....+.|+||++.+ .+++.++|||.||..|+. |.... .....||. |+..+...
T Consensus 17 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~--Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS-CGFFKCPL--CKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSS-CSCCCCSS--SCCCCCCC
T ss_pred CccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcC-CCCCCCCC--CCCcCCcc
Confidence 34578999999987 678889999999999999 43321 13678998 99887543
No 16
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.25 E-value=6.5e-08 Score=87.14 Aligned_cols=84 Identities=20% Similarity=0.424 Sum_probs=55.1
Q ss_pred CCCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhHH------hhhCChHHHHHHH
Q 008581 137 NARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMI------DMLASDEDKKKYS 209 (561)
Q Consensus 137 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i------~~ll~~e~~~ky~ 209 (561)
....+.|+||++.+ .+++.++|||.||..|+. |... ....||. |+..+..... ..++....+.
T Consensus 28 l~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~---~~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~~~~--- 97 (141)
T 3knv_A 28 LEAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS---GPQNCAA--CVHEGIYEEGISILESSSAFPDNAAR--- 97 (141)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGG---SCEECHH--HHHTTCCCTTTTEECGGGCEECHHHH---
T ss_pred CCcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhc---CCCCCCC--CCCcccccccccccchhhhcccHHHH---
Confidence 34578999999987 788999999999999999 4322 1468998 8775432211 1222222221
Q ss_pred HHHHHHHHhcCCCceecCCCCCCCeeec
Q 008581 210 RYLLRSYVEDNRKTKWCPAPGCEHAIDF 237 (561)
Q Consensus 210 ~~l~~~~v~~~~~~~~CP~~~C~~~i~~ 237 (561)
..+. .-.++||+.+|...+..
T Consensus 98 -----~~i~--~L~v~Cpn~GC~~~~~l 118 (141)
T 3knv_A 98 -----REVE--SLPAVCPSDGCTWKGTL 118 (141)
T ss_dssp -----HHHH--TSEEECCSTTCCCEEEH
T ss_pred -----HHHc--ccccccCCCCCCCEeEH
Confidence 1111 23579999999977764
No 17
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.24 E-value=1.8e-07 Score=78.12 Aligned_cols=54 Identities=20% Similarity=0.435 Sum_probs=42.0
Q ss_pred CCccccccccccccCCCeeecc-CCCccccccce--eccC-CcccccccCCCCCCCc-chh
Q 008581 138 ARELTCGICFDTYSCDKVVSAA-CGHPFCRACWR--VNDG-PGCLMLRCPDPSCCAA-VGQ 193 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~--i~~g-~~~~~i~CP~~~C~~~-v~~ 193 (561)
...+.||||++.+ .+|+.++ |||.||+.||. |..+ .......||..+|... +..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4579999999988 8999996 99999999999 4332 1113678999999876 543
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=3.7e-07 Score=74.80 Aligned_cols=57 Identities=25% Similarity=0.631 Sum_probs=42.7
Q ss_pred CCccccccccccccCCC--eeeccCCCccccccce-e-ccCCcccccccCCCCCCCcchhhHHhh
Q 008581 138 ARELTCGICFDTYSCDK--VVSAACGHPFCRACWR-V-NDGPGCLMLRCPDPSCCAAVGQDMIDM 198 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~-i-~~g~~~~~i~CP~~~C~~~v~~~~i~~ 198 (561)
...+.|+||++.+.... ++.++|||.||..|+. | .... ....||. |+..+....+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~--Cr~~~~~~~i~~ 73 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI--NGVRCPF--CSKITRITSLTQ 73 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS--SCBCCTT--TCCCBCCSSTTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC--CCcCCCC--CCCcccchhHHH
Confidence 45689999999884333 7889999999999999 4 3321 2589998 999876554443
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.22 E-value=4.5e-07 Score=72.77 Aligned_cols=54 Identities=31% Similarity=0.659 Sum_probs=41.1
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCC---cccccccCCCCCCCcchhhH
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGP---GCLMLRCPDPSCCAAVGQDM 195 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~---~~~~i~CP~~~C~~~v~~~~ 195 (561)
...+.|+||++.+ .+++.++|||.||..|+. |.... ......||. |+..+....
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPV--CGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS--SCCCCCSSG
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCC--CCCcCCHhh
Confidence 4578999999987 678889999999999999 32221 113678998 998886543
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.22 E-value=3e-07 Score=74.08 Aligned_cols=52 Identities=25% Similarity=0.708 Sum_probs=38.8
Q ss_pred CCccccccccccccCCCeeecc--CCCccccccce-eccCCcccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVSAA--CGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
...++|+||++.+...++..++ |||.||..||. +... ....||. |+..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD---ENGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS---SCSBCTT--TCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc---CCCCCCC--CCCccCCC
Confidence 4578999999987544555444 99999999999 3222 2578998 99988654
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.21 E-value=2.7e-07 Score=78.00 Aligned_cols=64 Identities=19% Similarity=0.396 Sum_probs=45.5
Q ss_pred CccccccccccccCCCeee-ccCCCccccccce-eccCCcccccccCCCCCCCcchhhHHhh-hCChHHHHHHH
Q 008581 139 RELTCGICFDTYSCDKVVS-AACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMIDM-LASDEDKKKYS 209 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i~~-ll~~e~~~ky~ 209 (561)
..+.|+||++.+ .+++. ++|||.||..|+. |.... ...||. |+..+....+.. ....++.+.+.
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~--Cr~~~~~~~l~~~~~~~~i~~~~~ 87 (100)
T 3lrq_A 21 EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPH--CRAPLQLRELVNCRWAEEVTQQLD 87 (100)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT---CSBCTT--TCCBCCGGGCEECTTHHHHHHHHH
T ss_pred CCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC---cCCCCC--CCCcCCHHHhHhhHHHHHHHHHHH
Confidence 368899999988 67888 9999999999999 43221 268998 999987654433 23334444443
No 22
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.21 E-value=1.9e-07 Score=82.03 Aligned_cols=48 Identities=21% Similarity=0.643 Sum_probs=39.4
Q ss_pred CccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 139 RELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
..+.|+||++.+ .+++.++|||.||..|+. +... ....||. |+..+..
T Consensus 51 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA---QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT---TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH---CcCCCCC--CCccCCC
Confidence 357899999988 689999999999999998 4332 2568998 9988865
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.19 E-value=7.6e-07 Score=70.78 Aligned_cols=48 Identities=31% Similarity=0.645 Sum_probs=38.1
Q ss_pred CCccccccccccccCCCeeecc-CCCccccccce-eccCCcccccccCCCCCCCcc
Q 008581 138 ARELTCGICFDTYSCDKVVSAA-CGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAV 191 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v 191 (561)
...+.|+||++.+ .+++.++ |||.||..|+. |.... ....||. |+..+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~--Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES--DEHTCPT--CHQND 62 (74)
T ss_dssp CGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS--SSSCCSS--SCCSS
T ss_pred CCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc--CCCcCCC--CCCcC
Confidence 4578999999988 6788899 99999999999 43221 1478998 98864
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.15 E-value=4.9e-07 Score=76.06 Aligned_cols=64 Identities=30% Similarity=0.675 Sum_probs=44.8
Q ss_pred CccccccccccccCCCeeec-cCCCccccccce-eccCCcccccccCCCCCCCcchhhHH-hhhCChHHHHHHHH
Q 008581 139 RELTCGICFDTYSCDKVVSA-ACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMI-DMLASDEDKKKYSR 210 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i-~~ll~~e~~~ky~~ 210 (561)
..+.|+||++.+ .+++.+ +|||.||..|+. |... ...||. |+..+....+ .+....++++.|.+
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 21 DLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSY----KTQCPT--CCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTT----CCBCTT--TCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHC----CCCCCC--CCCcCChhhCCcCHHHHHHHHHHHH
Confidence 357899999988 678777 899999999999 4432 358998 9998865332 23333344555543
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=9.2e-07 Score=67.79 Aligned_cols=45 Identities=33% Similarity=0.805 Sum_probs=34.6
Q ss_pred CCCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCC
Q 008581 137 NARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPD 184 (561)
Q Consensus 137 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~ 184 (561)
....+.|+||++.+ .+++.++|||.||..|+. |....+ ....||.
T Consensus 17 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETSC-GFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHHCS-SCCCCSC
T ss_pred CccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHcCC-CCCcCcC
Confidence 34578999999988 678889999999999999 432111 2578986
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.12 E-value=6.1e-07 Score=80.38 Aligned_cols=45 Identities=31% Similarity=0.748 Sum_probs=37.5
Q ss_pred ccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
.++|+||++.+ .+++.++|||.||..|+. |... ...||. |+..+.
T Consensus 53 ~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR----KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT----CSBCTT--TCCBCC
T ss_pred cCCCcccCccc--CCceECCCCCCccHHHHHHHHHc----CCcCCC--CCCcCC
Confidence 46899999988 789999999999999999 5443 357998 988764
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=8.8e-07 Score=71.60 Aligned_cols=47 Identities=28% Similarity=0.583 Sum_probs=38.8
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
...+.|+||++.+ .+++.++|||.||..|+. |... ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA----TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH----CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC----CCcCCC--cCcccc
Confidence 4468999999988 678889999999999999 4332 458998 998875
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.3e-06 Score=65.57 Aligned_cols=44 Identities=30% Similarity=0.709 Sum_probs=34.0
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCC
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPD 184 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~ 184 (561)
...+.|+||++.+ .+++.++|||.||..|+. |..... ....||.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYL--KEPVIIECGHNFCKACITRWWEDLE-RDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBC--SSCCCCSSCCCCCHHHHHHHTTSSC-CSCCCSC
T ss_pred ccCCCCccCCccc--CccEeCCCCCccCHHHHHHHHHhcC-CCCCCCC
Confidence 4578999999988 677889999999999999 432211 2578986
No 29
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.11 E-value=9.5e-07 Score=88.17 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=40.9
Q ss_pred CCCccccccccccccCCCeeeccCCCccccccce--eccCCcccccccCCCCCCCcchhh
Q 008581 137 NARELTCGICFDTYSCDKVVSAACGHPFCRACWR--VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 137 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~--i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
....+.|+||++.+ .+|+.++|||+||+.|+. +..+. ..||. |+..++..
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~~----~~cP~--~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRVG----HFNPV--TRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHTC----SSCTT--TCCCCCGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHCC----CCCcC--CCCCCchh
Confidence 35689999999988 899999999999999999 54432 23998 99988654
No 30
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.08 E-value=1.5e-06 Score=65.11 Aligned_cols=45 Identities=24% Similarity=0.483 Sum_probs=36.8
Q ss_pred CCccccccccccccCCCeeeccCCCccccccceeccCCcccccccCCCCCCCcch
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRVNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
...+.|+||++.+ .+++.++|||.||..|+.- ....||. |+..+.
T Consensus 4 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEA--KCPKLLPCLHTLCSGCLEA------SGMQCPI--CQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSC--BCCSCSTTSCCSBTTTCSS------SSSSCSS--CCSSSS
T ss_pred ccCCCceEeCCcc--CCeEEcCCCCcccHHHHcc------CCCCCCc--CCcEee
Confidence 3468899999988 5788899999999999873 2568998 887764
No 31
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=6.7e-07 Score=70.64 Aligned_cols=50 Identities=28% Similarity=0.549 Sum_probs=39.1
Q ss_pred CCccccccccccccCCCeeec-cCCCccccccce-eccCCcccccccCCCCCCCcchhhH
Q 008581 138 ARELTCGICFDTYSCDKVVSA-ACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDM 195 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~ 195 (561)
...+.|+||++.+ .+++.+ +|||.||..|+. |... ...||. |+..+....
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~--Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYY----SNRCPK--CNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHH----CSSCTT--TCCCCCSSC
T ss_pred CCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHc----CCcCCC--cCcccCccc
Confidence 4578999999987 567776 999999999999 4322 468998 998876543
No 32
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.07 E-value=6.1e-07 Score=81.61 Aligned_cols=48 Identities=25% Similarity=0.674 Sum_probs=39.6
Q ss_pred ccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhh
Q 008581 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
.+.|+||++.+ .+++.++|||.||..|+. +... ....||. |+..+...
T Consensus 78 ~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~---~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA---QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT---TCCBCTT--TCCBCCTT
T ss_pred CCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh---CCCcCCC--CCccCCCC
Confidence 57899999987 788999999999999999 4332 2468998 99988654
No 33
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.06 E-value=1.2e-06 Score=76.12 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=37.6
Q ss_pred CccccccccccccCCCeeec-cCCCccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 139 RELTCGICFDTYSCDKVVSA-ACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
..+.|+||++.+ .+++.+ +|||.||..|+. +.. ..||. |+..+..
T Consensus 21 ~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~--Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG------TGCPV--CYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT------TBCSS--SCCBCSC
T ss_pred hCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc------CCCcC--CCCcCcc
Confidence 368899999988 788888 999999999999 432 67998 9988753
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.05 E-value=3.8e-07 Score=70.49 Aligned_cols=52 Identities=25% Similarity=0.697 Sum_probs=38.3
Q ss_pred ccccccccc-cccCC--CeeeccCCCccccccce-e-ccCCcccccccCCCCCCCcchhhHHh
Q 008581 140 ELTCGICFD-TYSCD--KVVSAACGHPFCRACWR-V-NDGPGCLMLRCPDPSCCAAVGQDMID 197 (561)
Q Consensus 140 ~~~C~IC~e-~~~~~--~~~~l~CgH~fC~~C~~-i-~~g~~~~~i~CP~~~C~~~v~~~~i~ 197 (561)
.+.|+||++ .+... .++.++|||.||..|+. + ..+ ...||. |+..+....+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~CP~--Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG----AGNCPE--CGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT----SSSCTT--TCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC----CCcCCC--CCCccccccce
Confidence 578999999 55322 22568999999999999 4 432 468998 99988765543
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.03 E-value=1.7e-06 Score=70.15 Aligned_cols=53 Identities=34% Similarity=0.654 Sum_probs=40.5
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce--eccCC-cccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR--VNDGP-GCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~--i~~g~-~~~~i~CP~~~C~~~v~~~ 194 (561)
...+.|+||++.+ .+++.++|||.||..|+. +.... ......||. |+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPV--CRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTT--TCCCCCTT
T ss_pred ccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCC--CCCcCCHH
Confidence 4578999999987 677889999999999999 32210 112689998 99888654
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=1.8e-06 Score=70.04 Aligned_cols=51 Identities=31% Similarity=0.735 Sum_probs=40.1
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-e-cc---CCcccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-V-ND---GPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i-~~---g~~~~~i~CP~~~C~~~v~~~ 194 (561)
...+.|+||++.+ .+++.++|||.||..|+. + .. .. ....||. |+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDK--GESSCPV--CRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTT--SCCCCTT--TCCSSCSS
T ss_pred cCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCC--CCCcCCC--CCCccCHH
Confidence 4578999999987 678889999999999999 2 22 11 2689998 99887654
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.03 E-value=8.3e-07 Score=72.67 Aligned_cols=49 Identities=10% Similarity=-0.088 Sum_probs=40.2
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
...+.|+||++.+ .+++.++|||.||+.||. +-.+ ...||. |+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN----SPTDPF--NRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH----CSBCTT--TCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc----CCCCCC--CcCCCChH
Confidence 4579999999988 899999999999999999 3322 357998 88887654
No 38
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.02 E-value=9.6e-07 Score=74.61 Aligned_cols=49 Identities=10% Similarity=-0.085 Sum_probs=40.5
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
...+.|+||++.+ .+|+.++|||.||+.||. +-.+ ...||. |+..+...
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~--~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN----SPTDPF--NRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS----CSBCSS--SCCBCCTT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc----CCCCCC--CCCCCChh
Confidence 4579999999988 899999999999999999 4333 357998 88887653
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.00 E-value=3.8e-07 Score=71.57 Aligned_cols=54 Identities=33% Similarity=0.787 Sum_probs=40.1
Q ss_pred CCccccccccccccC-----CCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhHHh
Q 008581 138 ARELTCGICFDTYSC-----DKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMID 197 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i~ 197 (561)
.....|+||++.+.. ..++.++|||.||..|+. |... ...||. |+..+....+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~--Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPT--CRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTT--TCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCC--CCCccChhhee
Confidence 457889999998732 223788999999999999 5332 248998 99988765443
No 40
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.00 E-value=2.1e-06 Score=83.99 Aligned_cols=52 Identities=27% Similarity=0.510 Sum_probs=42.8
Q ss_pred CCccccccccccccCCCeee-ccCCCccccccce--eccCCcccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVS-AACGHPFCRACWR--VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~--i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
...+.||||++.+ .+||+ ..|||.||+.||. |..+ ....||..||+..+...
T Consensus 179 ~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~---~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGY---TTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTC---SCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhC---CCCCCCcccccCcCchh
Confidence 4468999999988 88987 4999999999999 5543 25789999999987654
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.97 E-value=3.7e-06 Score=67.28 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=39.2
Q ss_pred CCccccccccccccCC-CeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhH
Q 008581 138 ARELTCGICFDTYSCD-KVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDM 195 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~ 195 (561)
.....|+||++.+... .+..++|||.||..|+. |... ...||. |+..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~--Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPV--CRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTT--TCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcC--cCCccCCcc
Confidence 4568999999987543 34567999999999999 5432 258998 998876543
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.95 E-value=1.3e-06 Score=74.73 Aligned_cols=46 Identities=26% Similarity=0.592 Sum_probs=37.4
Q ss_pred CccccccccccccCCCeeec-cCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 139 RELTCGICFDTYSCDKVVSA-ACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
..+.|+||++.+ .+++.+ +|||.||..|+. |... ...||. |+..+.
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~--Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET----SKYCPI--CDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS----CSBCTT--TCCBSC
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh----CCcCcC--CCcccc
Confidence 468899999988 678887 999999999999 4332 268998 988764
No 43
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.94 E-value=5.1e-07 Score=69.21 Aligned_cols=53 Identities=34% Similarity=0.785 Sum_probs=39.5
Q ss_pred CccccccccccccC-----CCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhHHh
Q 008581 139 RELTCGICFDTYSC-----DKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMID 197 (561)
Q Consensus 139 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i~ 197 (561)
+.+.|+||++.+.. ..++.++|||.||..|+. |... ...||. |+..+....+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~--Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPT--CRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTT--TCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCC--CCccCCcccee
Confidence 35789999998732 233778999999999999 4332 358998 99988765543
No 44
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=1.4e-06 Score=67.83 Aligned_cols=50 Identities=36% Similarity=0.846 Sum_probs=37.2
Q ss_pred CCCccccccccccccC-----CCeeeccCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 137 NARELTCGICFDTYSC-----DKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 137 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
....+.|+||++.+.. ..++.++|||.||..|+. |... ...||. |+..|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPT--CRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTT--TCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCC--CCCccC
Confidence 3457899999998732 123778999999999999 4332 357998 988764
No 45
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.93 E-value=3.4e-06 Score=70.93 Aligned_cols=49 Identities=12% Similarity=-0.118 Sum_probs=40.4
Q ss_pred CCccccccccccccCCCeeeccCC-Cccccccce-eccCCcccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACG-HPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
...+.|+||++.+ .+||.++|| |.||+.||. +-.. ...||. |+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~----~~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS----DQTDPF--NRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT----SCBCTT--TCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh----CCCCCC--CCCCCChh
Confidence 4589999999988 899999999 999999999 4332 247998 88888654
No 46
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.93 E-value=3.4e-06 Score=62.57 Aligned_cols=49 Identities=24% Similarity=0.596 Sum_probs=36.9
Q ss_pred CCccccccccccccC--CCeeeccCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 138 ARELTCGICFDTYSC--DKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
.....|+||++.+.. ..++.++|||.||..|+. |... ...||. |+..++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCC--CCCcCC
Confidence 346789999998743 346788999999999999 4332 267998 887653
No 47
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.86 E-value=5.3e-06 Score=64.69 Aligned_cols=50 Identities=24% Similarity=0.474 Sum_probs=37.6
Q ss_pred CCccccccccccccC-CCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 138 ARELTCGICFDTYSC-DKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
.....|+||++.+.. ..++.++|||.||..|+. |... ...||. |+..|..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPI--CRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTT--TCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcC--cCccccC
Confidence 446789999998743 456779999999999999 4332 235998 9887643
No 48
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.82 E-value=7.5e-06 Score=60.69 Aligned_cols=47 Identities=23% Similarity=0.541 Sum_probs=35.6
Q ss_pred CccccccccccccCC-Ceeecc-CCCccccccce-eccCCcccccccCCCCCCCcc
Q 008581 139 RELTCGICFDTYSCD-KVVSAA-CGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAV 191 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v 191 (561)
....|+||++.+... .++.++ |||.||..|+. |... ...||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~--Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPL--CRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSS--SCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcC--CCCEe
Confidence 357899999987543 356676 99999999999 5433 357998 88765
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.81 E-value=4.9e-06 Score=68.87 Aligned_cols=50 Identities=24% Similarity=0.528 Sum_probs=38.3
Q ss_pred CCccccccccccccCCC-eeeccCCCccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 138 ARELTCGICFDTYSCDK-VVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
.....|+||++.+.... ++.++|||.||..|+. |... ...||. |+..+++
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcC--cCccCCC
Confidence 34678999999875433 5678999999999999 5443 347998 9887754
No 50
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=4.1e-06 Score=65.49 Aligned_cols=47 Identities=30% Similarity=0.702 Sum_probs=36.8
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
.....|+||++.+. + +.++|||.||..|+. |... ...||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~----~~~CP~--Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR----HRNCPI--CRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC----CSSCHH--HHHCTTC
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC----cCcCCC--cCCcccC
Confidence 44688999999874 4 789999999999999 5442 567987 8776643
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.73 E-value=9.9e-06 Score=64.30 Aligned_cols=42 Identities=36% Similarity=0.808 Sum_probs=35.9
Q ss_pred ccccccccccccCCCeeeccCCCc-cccccce-eccCCcccccccCCCCCCCcchh
Q 008581 140 ELTCGICFDTYSCDKVVSAACGHP-FCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
...|+||++.+ .+++.++|||. ||..|+. + ..||. |+..+..
T Consensus 24 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~--------~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV--------DKCPM--CYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC--------SBCTT--TCCBCSE
T ss_pred CCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC--------ccCCC--cCcCccC
Confidence 57899999987 78889999999 9999988 5 57998 9887753
No 52
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.72 E-value=8e-06 Score=76.04 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=40.4
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce--eccCCcccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR--VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~--i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
...+.||||++.+ .+||.++|||.||+.|+. +..+. . .||. |+..+...
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~~---~-tcP~--t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRVG---H-FDPV--TRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHTC---S-BCTT--TCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhCC---C-CCCC--CcCCCChh
Confidence 4589999999987 899999999999999999 54432 2 6998 88888654
No 53
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.69 E-value=7.9e-06 Score=75.29 Aligned_cols=47 Identities=30% Similarity=0.697 Sum_probs=37.2
Q ss_pred CccccccccccccCCCeeec-cCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 139 RELTCGICFDTYSCDKVVSA-ACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
..+.|+||++.+ .+++.+ +|||.||..|+. |.... ...||. |+..+.
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRSG---NKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHTT---CCBCTT--TCCBCC
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHhC---cCCCCC--CCCcCC
Confidence 357999999988 567776 999999999999 43321 467998 998874
No 54
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.69 E-value=8.4e-06 Score=63.26 Aligned_cols=45 Identities=27% Similarity=0.602 Sum_probs=35.5
Q ss_pred ccccccccccccCCC-eeeccCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 140 ELTCGICFDTYSCDK-VVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
...|+||++.+ .+ ++.++|||.||..|+. |... ...||. |+..+.
T Consensus 5 ~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~--Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQ----NPTCPL--CKVPVE 51 (68)
T ss_dssp CCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHH----SCSTTT--TCCCCC
T ss_pred CCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhC----cCcCcC--CChhhH
Confidence 56899999987 44 4789999999999999 4332 357998 988775
No 55
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=1.1e-05 Score=64.13 Aligned_cols=50 Identities=22% Similarity=0.533 Sum_probs=37.5
Q ss_pred CCccccccccccccCCC-eeeccCCCccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 138 ARELTCGICFDTYSCDK-VVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
.....|+||++.+.... ++.++|+|.||..|+. |... ...||. |+..+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPI--CRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTT--TCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcC--cCCcCCC
Confidence 34678999999875433 4678999999999999 5332 247998 9887754
No 56
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=1.7e-05 Score=62.70 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=36.5
Q ss_pred CCccccccccccccCC-CeeeccCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 138 ARELTCGICFDTYSCD-KVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
.....|+||++.+... .+..++|+|.||..|+. |... ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCC--cCcccc
Confidence 4467899999987543 34556999999999999 4332 237998 988764
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=1.9e-05 Score=62.75 Aligned_cols=43 Identities=33% Similarity=0.767 Sum_probs=35.5
Q ss_pred ccccccccccccCCCeeeccCCCc-cccccceeccCCcccccccCCCCCCCcchh
Q 008581 140 ELTCGICFDTYSCDKVVSAACGHP-FCRACWRVNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
...|+||++.+ .+++.++|||. ||..|+. ....||. |+..+..
T Consensus 25 ~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~-------~~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAE-------AVDKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCBCCSSSCCCCBCHHHHH-------HCSBCTT--TCCBCCC
T ss_pred CCCCCcCCCCC--CCEEEecCCCHHHHHHHhh-------CCCCCcc--CCceecC
Confidence 56899999986 77888999999 9999985 1357998 9887743
No 58
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.55 E-value=2.1e-05 Score=67.64 Aligned_cols=51 Identities=27% Similarity=0.561 Sum_probs=35.8
Q ss_pred ccccccccccccCC----------------CeeeccCCCccccccce-ec-cCCcccccccCCCCCCCcch
Q 008581 140 ELTCGICFDTYSCD----------------KVVSAACGHPFCRACWR-VN-DGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 140 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~-i~-~g~~~~~i~CP~~~C~~~v~ 192 (561)
...|+||++.+... ....++|+|.||..|+. |. .+.......||. |+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCC--CCCccC
Confidence 46899999987331 12267899999999999 43 221113578998 988764
No 59
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.38 E-value=5.4e-05 Score=60.86 Aligned_cols=42 Identities=26% Similarity=0.720 Sum_probs=35.3
Q ss_pred ccccccccccccCCCeeeccCCCc-cccccce-eccCCcccccccCCCCCCCcchh
Q 008581 140 ELTCGICFDTYSCDKVVSAACGHP-FCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
...|+||++.. .+++.++|||. ||..|+. + ..||. |+..+..
T Consensus 18 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~--------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL--------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC--------SBCTT--TCCBCCE
T ss_pred CCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc--------CcCCC--CCchhhC
Confidence 46799999976 78899999999 9999987 4 28998 9987754
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=56.75 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=36.6
Q ss_pred CCccccccccccccCCCeeeccCCCc-cccccceeccCCcccccccCCCCCCCcchh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHP-FCRACWRVNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
.....|.||++.. .+++.+||||. ||..|... ...||. |+..|..
T Consensus 13 ~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~-------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY-------FQQCPM--CRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH-------CSSCTT--TCCCCCC
T ss_pred CCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc-------CCCCCC--CCcchhc
Confidence 4467899999976 67889999999 99999871 357998 9887643
No 61
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.28 E-value=6.2e-05 Score=61.54 Aligned_cols=48 Identities=23% Similarity=0.654 Sum_probs=39.3
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCc-cCCCCCCCCcccCCcch
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAW-SDHGERTGGFYACNRYE 346 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w-~~h~~~~g~~y~C~~~~ 346 (561)
+-||.|..++....+...++|. .|++.||+.|..+| ..|.. ..|..|+
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~-~C~~~FC~~C~~~w~~~H~~-----~sC~~~~ 74 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCP-QCHQTFCVRCKRQWEEQHRG-----RSCEDFQ 74 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECT-TTCCEECSSSCSBCCTTTTT-----SCHHHHH
T ss_pred eECcCCCchheecCCCCceEeC-CCCCccccccCCchhhcCCC-----CChHHHH
Confidence 5699999999888888889997 89999999999999 44543 3576654
No 62
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.00018 Score=58.02 Aligned_cols=50 Identities=30% Similarity=0.419 Sum_probs=33.9
Q ss_pred CCccccccccccccC------------CCeeec-cCCCccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 138 ARELTCGICFDTYSC------------DKVVSA-ACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
....+|+||++.+.. ..++.+ +|||.|+..|+. |-... -.||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~--CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPL--CQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTT--TCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCCC--cCCCcch
Confidence 345567777776632 224455 599999999999 54332 37998 9887654
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.19 E-value=5.9e-05 Score=57.99 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=35.8
Q ss_pred CCccccccccccccCCCeeec--cCCCc-cccccce-eccCCcccccccCCCCCCCcch
Q 008581 138 ARELTCGICFDTYSCDKVVSA--ACGHP-FCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
.....|.||++.. .+++.+ +|||. ||..|+. +... ...||. |+..+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPi--CR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKR----NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHT----TCCCTT--TCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHc----CCcCCC--cCcchh
Confidence 3467899999976 566655 99999 8999999 4432 347998 988774
No 64
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.16 E-value=8.7e-05 Score=77.01 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=38.0
Q ss_pred ccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
...|+||++.+ .+++.++|||.||..|+. |... ....||. |+..+..
T Consensus 332 ~~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES---EGQGCPF--CRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH---TCSBCTT--TCCBCCE
T ss_pred CCCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc---CCCCCCC--CCCccCC
Confidence 36899999987 778999999999999999 5432 1458998 9987754
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.09 E-value=9.2e-05 Score=56.72 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=34.7
Q ss_pred CccccccccccccCCCeeec--cCCCc-cccccce-eccCCcccccccCCCCCCCcch
Q 008581 139 RELTCGICFDTYSCDKVVSA--ACGHP-FCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
....|.||++.. .+++.+ ||||. ||..|.. +... ...||. |+..+.
T Consensus 6 ~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPi--CR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKA----GASCPI--CKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHT----TCBCTT--TCCBCC
T ss_pred cCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHh----CCcCCC--cCchhh
Confidence 356899999976 455555 99998 9999999 4332 257998 998774
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.04 E-value=0.00025 Score=72.92 Aligned_cols=41 Identities=37% Similarity=0.844 Sum_probs=35.8
Q ss_pred ccccccccccccCCCeeeccCCCc-cccccce-eccCCcccccccCCCCCCCcch
Q 008581 140 ELTCGICFDTYSCDKVVSAACGHP-FCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
...|+||++.+ .+++.++|||. ||..|+. + ..||. |+..+.
T Consensus 295 ~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~--------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL--------RKCPI--CRGIIK 337 (345)
T ss_dssp TCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC--------SBCTT--TCCBCC
T ss_pred CCCCCccCCcC--CceEEcCCCChhHhHHHHhcC--------CcCCC--CCCCcc
Confidence 57899999987 78999999999 9999998 4 57998 988774
No 67
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.98 E-value=6.5e-05 Score=65.93 Aligned_cols=55 Identities=33% Similarity=0.775 Sum_probs=41.3
Q ss_pred CCCccccccccccccC-----CCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhhHHh
Q 008581 137 NARELTCGICFDTYSC-----DKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQDMID 197 (561)
Q Consensus 137 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~~i~ 197 (561)
+.....|+||++.+.. ..++.++|||.||..|+. |... ...||. |+..+....+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~--Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPT--CRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTT--TCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCC--CCCcCChhcce
Confidence 4567889999998732 223778999999999999 5432 358998 99998776553
No 68
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.73 E-value=0.00041 Score=55.80 Aligned_cols=40 Identities=28% Similarity=0.707 Sum_probs=35.0
Q ss_pred CCCCCC--CCcceeecCCCCceEeCC----CCcchhhhhhhcCccC
Q 008581 292 SKPCPK--CKRPIEKNQGCMHMTCSP----PCKFEFCWLCLGAWSD 331 (561)
Q Consensus 292 tK~CP~--C~~~IEK~~GCnhm~C~~----~C~~~FCw~C~~~w~~ 331 (561)
.+-||. |+.+|....++..++|.. .|++.||+.|+.+|+.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 378997 999999888999999941 4999999999999976
No 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.65 E-value=0.00066 Score=57.66 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=35.9
Q ss_pred CCccccccccccccCC----------------CeeeccCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 138 ARELTCGICFDTYSCD----------------KVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
....+|+||++.+... .++.++|+|.|+..|+. |... ...||. |+..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPL--DNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSS--SCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcC--CCCcce
Confidence 3456799999887432 13557899999999999 5433 357998 988753
No 70
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.32 E-value=0.002 Score=51.66 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=38.9
Q ss_pred CCccccccccccccCCCeeeccCC-----Cccccccce-eccCCcccccccCCCCCCCcchh
Q 008581 138 ARELTCGICFDTYSCDKVVSAACG-----HPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQ 193 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~ 193 (561)
.....|.||++.+...+...+||. |.|...|+. |-... ....||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~Cpl--Cr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS--DTRCCEL--CKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSS--SCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCC--CCCeeec
Confidence 345789999998866666678996 999999999 43321 1468999 9887743
No 71
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.83 E-value=0.0017 Score=56.03 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=0.9
Q ss_pred CccccccccccccCC----------------CeeeccCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 139 RELTCGICFDTYSCD----------------KVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
..-+|+||++.+... .++.++|+|.|+..|+. |... ...||. |+..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPL--DNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCC--CCCeee
Confidence 346899999987431 11235899999999999 5433 357998 987653
No 72
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.15 E-value=0.0077 Score=45.44 Aligned_cols=37 Identities=35% Similarity=0.830 Sum_probs=30.9
Q ss_pred CceecCCCCCCCeeecccCCCCceeEe-c--CCcccccccCccc
Q 008581 222 KTKWCPAPGCEHAIDFAAGSGNFDVSC-L--CSYNFCWNCTEEA 262 (561)
Q Consensus 222 ~~~~CP~~~C~~~i~~~~~~~~~~v~C-~--C~~~fC~~C~~~~ 262 (561)
+.+.||. |...|... .+...++| . |++.||+.|+.+|
T Consensus 5 ~~k~CP~--C~~~Iek~--~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECPK--CHVTIEKD--GGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCTT--TCCCCSSC--CSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECcC--CCCeeEeC--CCCCcEEECCCCcCCEEeeCcCCCc
Confidence 4578986 99999875 46778999 5 9999999999876
No 73
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.66 E-value=0.056 Score=38.08 Aligned_cols=41 Identities=15% Similarity=0.359 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 78 QEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 78 ~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
+.+.|.+...+.++++..|+.+|...+||.+..+..||.++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679999999999999999999999999999999998764
No 74
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.42 E-value=0.0056 Score=46.34 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=35.6
Q ss_pred ccccccccccccCCCeeec-cCCCccccccce--eccCCcccccccCCCCCCCcchhhH
Q 008581 140 ELTCGICFDTYSCDKVVSA-ACGHPFCRACWR--VNDGPGCLMLRCPDPSCCAAVGQDM 195 (561)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~--i~~g~~~~~i~CP~~~C~~~v~~~~ 195 (561)
.+.|+||++.. .+++.+ ++||.|++.|+. +..+ -.||. .+..+....
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~-----~~cP~--t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDT-----GNDPI--TNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHH-----SBCTT--TCCBCCGGG
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhC-----CCCcC--CcCCCChhh
Confidence 47899999987 788888 899999999999 4332 13998 666665443
No 75
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.25 E-value=0.15 Score=38.55 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 77 QQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 77 ~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
.+.+.|.+...+.+.++..|+.+|...+||.+..+..||.++
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 456679999999999999999999999999999999999765
No 76
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=92.88 E-value=0.13 Score=51.99 Aligned_cols=55 Identities=27% Similarity=0.469 Sum_probs=36.6
Q ss_pred CCccccccccccccC-CCee-----eccCCCccccccce-ecc----CC---cccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSC-DKVV-----SAACGHPFCRACWR-VND----GP---GCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~C~~-i~~----g~---~~~~i~CP~~~C~~~v~~~ 194 (561)
.....|+||++.+.. ..+. ...|+|.|...|+. |-. +. +...=.||. |+..|+-.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCcc
Confidence 356789999987654 2221 34799999999998 321 11 112347998 99988644
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.69 E-value=0.0099 Score=49.54 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=44.8
Q ss_pred ceeEe-cCCcccccccCcccCCCCCchhHHHHHHHhHhhhHhHHHHHhcCCCCCCC-CcceeecCCCCceEeCCCCcchh
Q 008581 244 FDVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKC-KRPIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 244 ~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~~~~~wi~~ntK~CP~C-~~~IEK~~GCnhm~C~~~C~~~F 321 (561)
....| .|++.||..|...+|....-...+..+.... +. ......|+.+ +.+++ ++|. .|+..+
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~-~~------~~~~~~C~~H~~e~l~-------~fC~-~~~~~i 81 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIP-DS------HIRGLMCLEHEDEKVN-------MYCV-TDDQLI 81 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCC-SC------CSSCCCCSSCSSSCCC-------EEET-TTTEEE
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeecccc-cc------CccCCcCcCcCCCcce-------EECC-CCCCcc
Confidence 34579 9999999999987776322111111111100 00 0012579999 58888 9999 899999
Q ss_pred hhhhhc
Q 008581 322 CWLCLG 327 (561)
Q Consensus 322 Cw~C~~ 327 (561)
|+.|..
T Consensus 82 C~~C~~ 87 (101)
T 2jun_A 82 CALCKL 87 (101)
T ss_dssp CHHHHH
T ss_pred chhcCC
Confidence 999974
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.28 E-value=0.051 Score=45.09 Aligned_cols=31 Identities=19% Similarity=0.689 Sum_probs=24.2
Q ss_pred CccccccccccccCCCeee--ccCCCccccccce
Q 008581 139 RELTCGICFDTYSCDKVVS--AACGHPFCRACWR 170 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~--l~CgH~fC~~C~~ 170 (561)
+.+.|+||.+.+. .+++. +.|+|.||..|+.
T Consensus 2 ee~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~ 34 (101)
T 2jun_A 2 EKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLK 34 (101)
T ss_dssp CCCBCTTCCSSSC-CBCCEEETTTTEEECHHHHH
T ss_pred CCCCCcCCCCCCC-CCceEECCcCChHHhHHHCH
Confidence 3578999997632 34444 8999999999998
No 79
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.51 E-value=0.41 Score=36.72 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 78 QEDDITKVSTVLS-ISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 78 ~~~~i~~v~~vl~-i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
+.+.|.+...|.+ .++..|+.+|...+||.+..+..||.+.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4567999999999 8899999999999999999999999764
No 80
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.02 E-value=0.43 Score=36.49 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 80 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
+.|.+...+.+.++..|+..|...+||.+..+..||.++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 468889999999999999999999999999999998764
No 81
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=89.66 E-value=0.5 Score=39.28 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 78 QEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 78 ~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
+++.|..|.++.+++++.|+..|...+|++...++.++.+.
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 47899999999999999999999999999999999887653
No 82
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.32 E-value=0.26 Score=38.58 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=35.3
Q ss_pred CCccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcch
Q 008581 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
.....|.||.+.+... ..-..|+|.|-..|+. |-... ..-.||. |+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSN--AEPRCPH--CNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTC--SSCCCTT--TCSCCC
T ss_pred CCCCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhc--CCCCCCC--CcCcCC
Confidence 3457899999987533 2233899999999999 54332 1367998 887664
No 83
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=88.81 E-value=0.097 Score=43.23 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=27.9
Q ss_pred ccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcc
Q 008581 142 TCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAV 191 (561)
Q Consensus 142 ~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v 191 (561)
.|++|--.+. .-...+||.|.||.+|.. +.... .-.||. |+..|
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~--C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKKG---DKMCPG--CSDPV 47 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHTT---CCBCTT--TCCBC
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhcc---CCCCcC--cCCee
Confidence 4777754331 223468999999999998 33221 345776 76665
No 84
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=86.00 E-value=0.86 Score=31.99 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHcCCChhhhhHhhh
Q 008581 78 QEDDITKVSTVLSISR-VDASILLRHYNWSVSKVHDAWF 115 (561)
Q Consensus 78 ~~~~i~~v~~vl~i~~-~~a~~LL~~~~W~~~~l~e~~~ 115 (561)
..+.|....+++|+++ +.|+..|-..+||.+..+..|+
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 4567889999999995 9999999999999988777664
No 85
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=85.38 E-value=0.21 Score=41.26 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=29.0
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
-.||-|...+. +.++|. .|||.||+.|...|-...
T Consensus 23 ~~C~IC~~~~~-----~p~~~~-~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCP-HCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp TBCTTTCSBCS-----SEEECT-TTCCEEEHHHHHHHHHHT
T ss_pred CCCccCCcccc-----CccccC-CCCChhhHHHHHHHHHHC
Confidence 58999998886 357778 799999999999986544
No 86
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=83.58 E-value=0.66 Score=38.28 Aligned_cols=47 Identities=26% Similarity=0.668 Sum_probs=32.5
Q ss_pred ecCCCCCCCeeecccCCCCceeEe-cCCcccccccCcccCCCCCchhHHHHHHHhHhhhHhHHHHHhcCCCCCCCCccee
Q 008581 225 WCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIE 303 (561)
Q Consensus 225 ~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~~~~~wi~~ntK~CP~C~~~IE 303 (561)
.||. |+..|.. ..+- .|++.||..|... |.....+.||.|+.+|.
T Consensus 3 fC~~--C~~Pi~i-------ygRmIPCkHvFCydCa~~-------------------------~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDK--CGLPIKV-------YGRMIPCKHVFCYDCAIL-------------------------HEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTT--TCSBCSE-------EEEEETTCCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCS
T ss_pred ecCc--cCCCeEE-------EeeeccccccHHHHHHHH-------------------------HHhccCCCCcCcCCeee
Confidence 5775 7766532 2356 8999999998632 22223389999999999
Q ss_pred ec
Q 008581 304 KN 305 (561)
Q Consensus 304 K~ 305 (561)
+.
T Consensus 49 rV 50 (101)
T 3vk6_A 49 RI 50 (101)
T ss_dssp EE
T ss_pred ee
Confidence 64
No 87
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.43 E-value=0.44 Score=35.69 Aligned_cols=32 Identities=25% Similarity=0.804 Sum_probs=22.9
Q ss_pred ecCCcccccccCcccCCCCCchhHHHHHHHhHhhhHhHHHHHhcCCCCCCCCcceee
Q 008581 248 CLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEK 304 (561)
Q Consensus 248 C~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~~~~~wi~~ntK~CP~C~~~IEK 304 (561)
=.|||.||..|... |.. .+...||.|+.++.+
T Consensus 24 ~~CgH~fC~~Ci~~------------~~~-------------~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 24 NVCGHTLCESCVDL------------LFV-------------RGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCCEEHHHHHH------------HHH-------------TTSSSCTTTCCCCSS
T ss_pred CCCCCHhHHHHHHH------------HHH-------------cCCCcCCCCCCcccc
Confidence 37999999998732 211 123689999999875
No 88
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=83.39 E-value=1.9 Score=28.87 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhh
Q 008581 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAW 114 (561)
Q Consensus 79 ~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~ 114 (561)
.+.|.++.+. |.+++.|+..|+..+||++..++.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578888887 9999999999999999998877643
No 89
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=82.43 E-value=0.34 Score=39.50 Aligned_cols=50 Identities=22% Similarity=0.506 Sum_probs=36.9
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcch-----hhhhhhcCccCCCCCCCCcccCCcc
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFE-----FCWLCLGAWSDHGERTGGFYACNRY 345 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~-----FCw~C~~~w~~h~~~~g~~y~C~~~ 345 (561)
..||.|+.+++.++| +.+|. .|+.. ||.-|..+.........--|.|+.-
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~-~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~c 87 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCR-SCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHG 87 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEET-TTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTT
T ss_pred ccCccCCCcceecCC--EEECc-cccchhhccccCcchhhHHHHHHHhcCcchhhccC
Confidence 799999999999988 77898 89865 6999988765443321135667654
No 90
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=81.82 E-value=3.1 Score=32.11 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 77 QQEDDITKVSTVL-SISRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 77 ~~~~~i~~v~~vl-~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
.+...|.+|.++| .+..+.+..+|.+|+-|++.++...+++
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5668899999998 6799999999999999999999987765
No 91
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.43 E-value=0.45 Score=37.78 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=33.5
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcc-----hhhhhhhcCccCCCCCCCCcccCCcc
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKF-----EFCWLCLGAWSDHGERTGGFYACNRY 345 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~-----~FCw~C~~~w~~h~~~~g~~y~C~~~ 345 (561)
..||.|+.+|+.++| +..|. .|+. -||-.|+.+......-..--|.||.-
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~-~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C 57 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCE-TCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNG 57 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECT-TTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTT
T ss_pred CCCCCCCCccccCCC--ceECc-cccccCCCcccCcchhhHHHHHHhcCCcCeeeccC
Confidence 579999999998877 55687 7874 37888887764432211134667654
No 92
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.89 E-value=0.83 Score=35.22 Aligned_cols=37 Identities=24% Similarity=0.723 Sum_probs=26.2
Q ss_pred eeEe-cCCcccccccCcccCCCCCchhHHHHHHHhHhhhHhHHHHHhcCCCCCCCCcceeecCC
Q 008581 245 DVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQG 307 (561)
Q Consensus 245 ~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~~~~~wi~~ntK~CP~C~~~IEK~~G 307 (561)
.+.. .|+|.||..|... |+.. + ..||.|+..+....|
T Consensus 38 ~~~~l~C~H~fh~~Ci~~------------w~~~-------------~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 38 LLRVLPCNHEFHAKCVDK------------WLKA-------------N-RTCPICRADSGPSSG 75 (75)
T ss_dssp EEEEETTTEEEETTHHHH------------HHHH-------------C-SSCTTTCCCCCCCCC
T ss_pred eEEEECCCCHhHHHHHHH------------HHHc-------------C-CcCcCcCCcCCCCCC
Confidence 3445 8999999998633 3321 1 589999999886655
No 93
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.80 E-value=0.82 Score=34.86 Aligned_cols=32 Identities=25% Similarity=0.674 Sum_probs=25.4
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
..||-|...+. +.++- .|||.||+.|+..|..
T Consensus 21 ~~C~IC~~~~~-----~~~~~--~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEEC--TTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEc--CCCChhhHHHHHHHHH
Confidence 58999988776 23444 4999999999999976
No 94
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=78.69 E-value=0.57 Score=42.30 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=27.8
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+. +.++.. .|||.||+.|...|-..
T Consensus 55 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTK-ECLHRFCADCIITALRS 88 (165)
T ss_dssp HBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHHT
T ss_pred CCCcccChHhh-----CcCEeC-CCCChhHHHHHHHHHHh
Confidence 48999988876 357775 59999999999998764
No 95
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.11 E-value=1.2 Score=32.45 Aligned_cols=27 Identities=30% Similarity=0.769 Sum_probs=21.6
Q ss_pred cCCcccccccCcccCCCCCchhHHHHHHHhHhhhHhHHHHHhcCCCCCCCCcceee
Q 008581 249 LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEK 304 (561)
Q Consensus 249 ~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~~~~~wi~~ntK~CP~C~~~IEK 304 (561)
.|||.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 79999999998551 2789999988763
No 96
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.82 E-value=0.59 Score=34.68 Aligned_cols=33 Identities=27% Similarity=0.697 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+.. .++- .|||.||+.|+..|...
T Consensus 21 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTI--DCGHNFCLKCITQIGET 53 (63)
T ss_dssp CBCTTTCSBCSS-----CEEC--TTSSEECHHHHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEe--CCCCcchHHHHHHHHHc
Confidence 589999887762 3444 49999999999998753
No 97
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=77.66 E-value=0.61 Score=34.81 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=32.0
Q ss_pred CccccccccccccCCCeeeccCC--C---ccccccce-eccCCcccccccCCCCCCCcch
Q 008581 139 RELTCGICFDTYSCDKVVSAACG--H---PFCRACWR-VNDGPGCLMLRCPDPSCCAAVG 192 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~ 192 (561)
....|.||++.. .+...+||. | .|-..|+. |-... ....||. |+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~--~~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTIS--RNTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHH--TCSBCTT--TCCBCC
T ss_pred CCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhC--CCCccCC--CCCeee
Confidence 456799999874 333457754 4 78889998 43211 1478998 887653
No 98
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.29 E-value=0.59 Score=35.81 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=26.0
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+.. .++-. .|+|.||+.|...|-..
T Consensus 16 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTIT-ECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GSCTTTSSCCSS-----CEECS-SSCCEECHHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEEC-CCCCHHHHHHHHHHHHc
Confidence 589999887763 35554 59999999999888643
No 99
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=76.62 E-value=0.89 Score=39.78 Aligned_cols=34 Identities=24% Similarity=0.650 Sum_probs=26.3
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
-.||-|...+. +.++.. |||.||+.|...|-...
T Consensus 54 ~~C~iC~~~~~-----~~~~~~--CgH~fc~~Ci~~~~~~~ 87 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTLN--CAHSFCSYCINEWMKRK 87 (138)
T ss_dssp SBCTTTCSBCS-----SEEEET--TSCEEEHHHHHHHTTTC
T ss_pred CCCcccCcccC-----CceECC--CCCCccHHHHHHHHHcC
Confidence 47999988775 235544 99999999999987654
No 100
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=76.39 E-value=1.9 Score=30.62 Aligned_cols=29 Identities=21% Similarity=0.636 Sum_probs=22.5
Q ss_pred CCCCCCCCc-ceeecCCCCceEeCCCCcchh
Q 008581 292 SKPCPKCKR-PIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 292 tK~CP~C~~-~IEK~~GCnhm~C~~~C~~~F 321 (561)
...||.|+. .|.-+..=..+.|. .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~-~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA-KCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES-SSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc-ccCCcc
Confidence 468999998 88777666778998 776644
No 101
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=75.59 E-value=1.3 Score=37.25 Aligned_cols=34 Identities=21% Similarity=0.556 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
-.||-|...+.. .++- .|||.||..|+..|..++
T Consensus 16 ~~C~iC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~~ 49 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTL--PCNHTLCKPCFQSTVEKA 49 (115)
T ss_dssp HBCTTTCSBCSS-----CEEC--TTSCEECHHHHCCCCCTT
T ss_pred CCCccCCcccCc-----eeEc--CCCCHHhHHHHHHHHhHC
Confidence 479999877652 2333 499999999999998653
No 102
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=75.14 E-value=1 Score=35.94 Aligned_cols=30 Identities=30% Similarity=0.727 Sum_probs=25.9
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcchhh
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFC 322 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~FC 322 (561)
.-.||.|+....+..+-..+.|. .|++.|-
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~-~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCS-YCDYKFT 56 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEET-TTCCEEE
T ss_pred cCcCCCCCCcceeccCCCeEECC-CCCCEec
Confidence 36999999999999888899999 8988663
No 103
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=74.57 E-value=1.6 Score=30.60 Aligned_cols=26 Identities=23% Similarity=0.696 Sum_probs=23.9
Q ss_pred CCCCCCC-cceeecCCCCceEeCCCCcchhhhhhh
Q 008581 293 KPCPKCK-RPIEKNQGCMHMTCSPPCKFEFCWLCL 326 (561)
Q Consensus 293 K~CP~C~-~~IEK~~GCnhm~C~~~C~~~FCw~C~ 326 (561)
..|+.++ .++. ++|. .|+...||.|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~ 33 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCK 33 (48)
T ss_dssp CBCSSSTTSBCC-------EEET-TTTEEECHHHH
T ss_pred CcCCCCCCcccc-------EEcC-CCCeeEccccc
Confidence 5799999 8888 9999 89999999996
No 104
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.20 E-value=0.95 Score=35.41 Aligned_cols=33 Identities=21% Similarity=0.677 Sum_probs=25.1
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+.. .+.. .|+|.||+.|+..|-..
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSA--DCNHSFCRACITLNYES 52 (85)
T ss_dssp TSCTTTCSCCSS-----CEEC--TTSCCBCHHHHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeC--CCCCHHHHHHHHHHHHh
Confidence 589999887653 2444 49999999999987644
No 105
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=74.07 E-value=1.6 Score=33.43 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcchh
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~F 321 (561)
.-.||.|+.+++-..+...+.|. .|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSR-QAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEET-TTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 35899999999988888889998 676544
No 106
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=74.04 E-value=1.8 Score=31.03 Aligned_cols=27 Identities=19% Similarity=0.556 Sum_probs=25.0
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhc
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 327 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 327 (561)
..||.++.+++ ++|. .|+...|+.|..
T Consensus 9 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 35 (53)
T 2did_A 9 SLCPQHHEALS-------LFCY-EDQEAVCLICAI 35 (53)
T ss_dssp CBCTTTCCBCC-------EEES-SSCSEECHHHHT
T ss_pred CcChhhCCeee-------EEeC-CCCeEEeccccC
Confidence 68999999998 9999 899999999975
No 107
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=73.97 E-value=1.5 Score=33.63 Aligned_cols=32 Identities=25% Similarity=0.728 Sum_probs=27.7
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGE 334 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~~ 334 (561)
..||.++.+++ ++|. .|+...|+.|.. ..|.+
T Consensus 19 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~--~~H~~ 50 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQ-TDQTCICYLCMF--QEHKN 50 (72)
T ss_dssp CBCTTTCCBCC-------EEES-SSCCEECHHHHH--TTTSS
T ss_pred CcCcccCCceE-------EEeC-CCCeEEccccCC--CCCCC
Confidence 68999999988 9999 899999999985 55653
No 108
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=73.92 E-value=0.88 Score=37.86 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=27.8
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
-.||-|...+. +.++.. .|||.||+.|...|-..+
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTII-ECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp TBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHTSC
T ss_pred CCCccCChHHh-----CcCEeC-CCCChhhHHHHHHHHHhC
Confidence 68999988775 356764 599999999999886543
No 109
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=72.98 E-value=0.95 Score=38.68 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=25.2
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+. +.++- .|||.||..|+..|-..
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~ 85 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFRA 85 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHHT
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHhH
Confidence 57999988776 23444 49999999999888653
No 110
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=72.25 E-value=1.3 Score=34.28 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+.. .++-. |||.||..|...|-..
T Consensus 9 ~~C~IC~~~~~~-----Pv~~~--CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMKD-----PVIVS--TGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCSS-----EEEET--TTEEEEHHHHHHHHTT
T ss_pred CCCCCccccccC-----CEEcC--CCCeecHHHHHHHHHH
Confidence 579999887752 35544 9999999999998765
No 111
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=72.10 E-value=0.97 Score=35.58 Aligned_cols=35 Identities=26% Similarity=0.823 Sum_probs=23.7
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCcc
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWS 330 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~ 330 (561)
..||-|-.++.. ..-..+.|. |||.||..|+..+.
T Consensus 12 ~~CpICle~~~~-~d~~~~p~~--CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEI-DDINFFPCT--CGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCT-TTTTCCSST--TSCCCCHHHHHHHT
T ss_pred CcCCccCccCcc-ccccccccC--CCCCcCHHHHHHHH
Confidence 579999987742 111223354 99999999987654
No 112
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=71.66 E-value=2.1 Score=30.26 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=27.3
Q ss_pred CCCCCC-CcceeecCCCCceEeCCCCcchhhhhhhcCccCCCC
Q 008581 293 KPCPKC-KRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHGE 334 (561)
Q Consensus 293 K~CP~C-~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~~ 334 (561)
..||.+ +.++. ++|. .|+..+|+.|.. ..|.+
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~~~~~iC~~C~~--~~H~~ 39 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCE-SCDTLTCRDCQL--NAHKD 39 (50)
T ss_dssp CBCSSSTTCBCC-------EEET-TTTEEECHHHHH--TTTTT
T ss_pred CcCcCCCCCCEE-------EEeC-CCCEEEecccCC--CcCCC
Confidence 579999 88888 9999 899999999986 35653
No 113
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=71.27 E-value=1.1 Score=36.61 Aligned_cols=35 Identities=20% Similarity=0.509 Sum_probs=27.4
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
-.||-|...+.. .++.. .|||.||..|...|-..+
T Consensus 23 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~~ 57 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIP-QCSHNYCSLCIRKFLSYK 57 (99)
T ss_dssp TBCTTTCSBCSS-----EEECT-TTCCEEEHHHHHHHHTTC
T ss_pred CCcccCChhhCC-----cCEEC-CCCCHhhHHHHHHHHHCC
Confidence 689999887763 45664 599999999999887643
No 114
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.03 E-value=1.3 Score=33.21 Aligned_cols=32 Identities=25% Similarity=0.581 Sum_probs=24.9
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
..||-|...+.. .+. . .|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQ-T-ECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEESS-----CCC-C-SSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhcC-----eeE-C-CCCCHHHHHHHHHHHH
Confidence 579999887752 233 3 5999999999999975
No 115
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=70.30 E-value=1.6 Score=34.21 Aligned_cols=48 Identities=29% Similarity=0.645 Sum_probs=33.5
Q ss_pred CCCCccccccccccccCCCeeecc--CCCccccccce--ecc-CCcccccccCC
Q 008581 136 SNARELTCGICFDTYSCDKVVSAA--CGHPFCRACWR--VND-GPGCLMLRCPD 184 (561)
Q Consensus 136 ~~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~--i~~-g~~~~~i~CP~ 184 (561)
++...+.|.+|-+.+..+-++..| =.|.||..|-+ |.. +. ...+-||.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~-~~EvyCPS 63 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGA-TGEVYCPS 63 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHS-SSCCCCTT
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCC-CCcEECCC
Confidence 345678999999988555555544 46999999999 532 22 23677775
No 116
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=70.11 E-value=1.1 Score=32.82 Aligned_cols=29 Identities=17% Similarity=0.545 Sum_probs=20.3
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcchh
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~F 321 (561)
.+.||+|+..+--...-+..+|. +|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~-kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCG-RCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECT-TTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECC-CCCCEE
Confidence 48999999744322334688998 898763
No 117
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=70.10 E-value=1.1 Score=34.56 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=25.7
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+. +.++-. .|+|.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALLE 49 (74)
T ss_dssp GSCSSSCCCCT-----TCEECS-SSCCEECTTHHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcC-CCCCHHHHHHHHHHHHh
Confidence 58999988776 234432 49999999999988754
No 118
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.96 E-value=8.4 Score=27.25 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhc
Q 008581 78 QEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (561)
Q Consensus 78 ~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (561)
..+.|.++.+. |.+++.|+..|+..+||++...+-.+.
T Consensus 8 ~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34567777665 889999999999999999998877654
No 119
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.77 E-value=2.6 Score=31.05 Aligned_cols=27 Identities=22% Similarity=0.642 Sum_probs=24.9
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhc
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 327 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 327 (561)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 15 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 41 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQ-EDGKVICWLCER 41 (59)
T ss_dssp SBCTTTCCBCC-------EEET-TTCSEECHHHHT
T ss_pred ccChhhCceee-------eecC-CCCcEEecccCC
Confidence 57999999988 9999 899999999985
No 120
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=69.12 E-value=7.8 Score=26.40 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhc
Q 008581 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (561)
Q Consensus 80 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (561)
+.|.++.+ .|.+++.|...|+..+||++...+-.+.
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45777776 5999999999999999999988776554
No 121
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.71 E-value=1.7 Score=33.03 Aligned_cols=34 Identities=32% Similarity=0.739 Sum_probs=25.5
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
..||-|...+.. .++- .|+|.||+.|...|...+
T Consensus 16 ~~C~IC~~~~~~-----~~~~--~CgH~fC~~Ci~~~~~~~ 49 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSL--PCKHVFCYLCVKGASWLG 49 (71)
T ss_dssp CBCSSSSSBCSS-----EEEE--TTTEEEEHHHHHHCTTCS
T ss_pred CCCccCCcccCC-----CEEc--cCCCHHHHHHHHHHHHCC
Confidence 579999877642 2444 399999999999886543
No 122
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=68.68 E-value=1.2 Score=37.03 Aligned_cols=34 Identities=24% Similarity=0.651 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
-.||-|...+.. .++ . .|||.||+.|...|-...
T Consensus 22 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~~ 55 (112)
T 1jm7_A 22 LECPICLELIKE-----PVS-T-KCDHIFCKFCMLKLLNQK 55 (112)
T ss_dssp TSCSSSCCCCSS-----CCB-C-TTSCCCCSHHHHHHHHSS
T ss_pred CCCcccChhhcC-----eEE-C-CCCCHHHHHHHHHHHHhC
Confidence 589999887752 233 3 499999999999887654
No 123
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=68.59 E-value=5.7 Score=30.80 Aligned_cols=37 Identities=11% Similarity=0.246 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 80 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
+.|.++.+ ++.+++.|+..|+..+||++..++..+.+
T Consensus 31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34666666 48999999999999999999998877654
No 124
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=68.21 E-value=1.3 Score=34.28 Aligned_cols=33 Identities=18% Similarity=0.614 Sum_probs=25.5
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+.. .++. .|||.||+.|...|-..
T Consensus 13 ~~C~IC~~~~~~-----p~~l--~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSL--DCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCC--SSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeEC--CCCCHHHHHHHHHHHHh
Confidence 579999877652 3443 49999999999998765
No 125
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=68.07 E-value=1.4 Score=33.13 Aligned_cols=37 Identities=22% Similarity=0.514 Sum_probs=26.3
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
..||-|...+... -. +... .|+|.||+.|+..|...+
T Consensus 15 ~~C~IC~~~~~~~--~~-~~~~-~C~H~fc~~Ci~~~~~~~ 51 (69)
T 2kiz_A 15 EKCTICLSILEEG--ED-VRRL-PCMHLFHQVCVDQWLITN 51 (69)
T ss_dssp CSBTTTTBCCCSS--SC-EEEC-TTSCEEEHHHHHHHHHHC
T ss_pred CCCeeCCccccCC--Cc-EEEe-CCCCHHHHHHHHHHHHcC
Confidence 6899998776422 12 3444 599999999999986543
No 126
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=67.60 E-value=1.6 Score=33.75 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=21.9
Q ss_pred cCCcc-cccccCcccCCCCCchhHHHHHHHhHhhhHhHHHHHhcCCCCCCCCcceee
Q 008581 249 LCSYN-FCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEK 304 (561)
Q Consensus 249 ~C~~~-fC~~C~~~~H~p~~C~~~~~~~~k~~~~~~~~~wi~~ntK~CP~C~~~IEK 304 (561)
.|||. ||..|...| +.||-|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 89999 999996543 689999998874
No 127
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=67.53 E-value=1.4 Score=31.38 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
..||-|...+...+ ..+... .|+|.||+.|+..|...
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~-~CgH~fc~~Ci~~~~~~ 42 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVL-PCGHLLHRTCYEEMLKE 42 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEEC-TTSCEEETTHHHHHHHH
T ss_pred CcCcccChhhcCCC--cCeEec-CCCCcccHHHHHHHHHc
Confidence 67999988774211 234555 59999999999888643
No 128
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.44 E-value=1.2 Score=35.30 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=26.5
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
-.||-|...+.... -..+.- .|||.||+.|...|-...
T Consensus 16 ~~C~IC~~~~~~~~-~~~~~~--~CgH~fC~~Ci~~~~~~~ 53 (88)
T 2ct2_A 16 LECPICMESFTEEQ-LRPKLL--HCGHTICRQCLEKLLASS 53 (88)
T ss_dssp CBCTTTCCBCCTTS-SCEEEC--SSSCEEEHHHHHHHHHHC
T ss_pred CCCccCCccccccC-CCeEEC--CCCChhhHHHHHHHHHcC
Confidence 57999988776431 112333 499999999999986543
No 129
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=67.18 E-value=1.5 Score=32.82 Aligned_cols=33 Identities=27% Similarity=0.858 Sum_probs=23.2
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
..||-|...+.. ...-. +|||.||+.|...|..
T Consensus 6 ~~C~IC~~~~~~-----~~~~~-~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 6 ERCPICLEDPSN-----YSMAL-PCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCSSCCSCCCS-----CEEET-TTTEEESTTHHHHHHH
T ss_pred CCCeeCCccccC-----CcEec-CCCCeeHHHHHHHHHh
Confidence 689999887652 12444 5888888888877754
No 130
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=66.79 E-value=2.6 Score=31.36 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=24.6
Q ss_pred CCCCCC-CcceeecCCCCceEeCCCCcchhhhhhhc
Q 008581 293 KPCPKC-KRPIEKNQGCMHMTCSPPCKFEFCWLCLG 327 (561)
Q Consensus 293 K~CP~C-~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 327 (561)
..||.+ +.+++ ++|. .|+...|+.|..
T Consensus 9 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 36 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCKV 36 (64)
T ss_dssp CCCSSCTTCCCC-------SEES-SSCCCCCSHHHH
T ss_pred CcCcCcCCCccc-------eEcC-cCCceeCccccC
Confidence 589999 88898 9999 899999999974
No 131
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=66.74 E-value=1.1 Score=33.86 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=27.1
Q ss_pred CCCCCCCcceeec-CCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKN-QGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~-~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
..||-|...+... .+=..+.-. .|||.||+.|...|-..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 50 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc
Confidence 6799998877642 111223444 59999999999988643
No 132
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.05 E-value=1.4 Score=31.78 Aligned_cols=32 Identities=22% Similarity=0.739 Sum_probs=24.7
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
-.||-|...+.. .+. . .|+|.||+.|+..|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKE-----PVI-I-ECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSS-----CCC-C-SSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCc-----cEe-C-CCCCccCHHHHHHHHH
Confidence 589999887763 233 3 4999999999999854
No 133
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.03 E-value=2.4 Score=30.43 Aligned_cols=28 Identities=21% Similarity=0.583 Sum_probs=18.2
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcch
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFE 320 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~ 320 (561)
.+.||+|+..+.-...=+.+.|. .|++.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~-kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACG-KCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECS-SSCCE
T ss_pred cccCCCCCCceEEecCCCeEECC-CCCCE
Confidence 37899998744322222668888 78864
No 134
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=65.74 E-value=2.5 Score=28.62 Aligned_cols=27 Identities=15% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhc
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 327 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 327 (561)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 4 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 30 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCK-DDGTLSCVICRD 30 (42)
T ss_dssp CCCCSSCSSCC-------CCCC-SSSSSSCCTTSS
T ss_pred ccchhhCCeee-------EEeC-CCCeEEeccCCC
Confidence 67999999888 9999 899999999975
No 135
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=65.15 E-value=2.1 Score=30.51 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=27.2
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
..||-|...+.... ..+... .|+|.||..|+..|....
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~-~C~H~f~~~Ci~~w~~~~ 43 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLP-RCGHGFHAECVDMWLGSH 43 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECS-SSCCEECTTHHHHTTTTC
T ss_pred CcCccCCccccCCC--ceEECC-CCCCcccHHHHHHHHHcC
Confidence 67999988776433 233443 499999999999997543
No 136
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.12 E-value=1.7 Score=33.91 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=25.3
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+.. .++ . .|+|.||+.|...|...
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVV-T-KCRHYFCESCALEHFRA 48 (81)
T ss_dssp SBCSSSCSBCCS-----EEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCcCCCchhcC-----eeE-c-cCCCHhHHHHHHHHHHC
Confidence 579999887753 344 4 59999999999988654
No 137
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=64.99 E-value=4.6 Score=39.61 Aligned_cols=43 Identities=9% Similarity=0.298 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcChH
Q 008581 77 QQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADED 119 (561)
Q Consensus 77 ~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~~ 119 (561)
.+.+.|.+-..+.+.++..|+..|..++||.+..++.||.+|.
T Consensus 14 ~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 3566799999999999999999999999999999999997754
No 138
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.88 E-value=1.8 Score=32.66 Aligned_cols=31 Identities=32% Similarity=0.877 Sum_probs=24.3
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
..||-|...+.. +.- +|+|.||+.|...|..
T Consensus 16 ~~C~IC~~~~~~------~~~--~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 16 EECCICMDGRAD------LIL--PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCSSSCCSCCS------EEE--TTTEEECHHHHHHSSC
T ss_pred CCCeeCCcCccC------ccc--CCCCcccHHHHHHHHH
Confidence 689999887653 333 4999999999998865
No 139
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=63.05 E-value=1.5 Score=35.05 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=24.6
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
-.||-|...+. +.++-. .|||.||..|+..|-.
T Consensus 14 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECS-----SCEECT-TTCCEECHHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECC-CCCCHHHHHHHHHHHH
Confidence 57999987765 234443 4999999999988853
No 140
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=62.87 E-value=8.6 Score=30.57 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 81 DITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 81 ~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
.|.++.++ |.++..|+..|+..+||+++.++-.|.++
T Consensus 32 ~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 32 SINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 45556553 89999999999999999999988777643
No 141
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=62.24 E-value=2.1 Score=38.08 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
-.||-|...+. +.++ . .|||.||+.|+..|-.++
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~~ 112 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKAQ 112 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHhC
Confidence 58999988765 2345 3 599999999999887653
No 142
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=62.08 E-value=1.6 Score=32.12 Aligned_cols=39 Identities=21% Similarity=0.438 Sum_probs=25.7
Q ss_pred CCCCCCCcceeecC-CCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQ-GCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~-GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+.... +-..+.-. .|||.||..|...|-..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc
Confidence 46888887765421 11223344 59999999999988654
No 143
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.92 E-value=3.3 Score=30.27 Aligned_cols=27 Identities=22% Similarity=0.597 Sum_probs=24.9
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhc
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 327 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 327 (561)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 45 (57)
T 2egm_A 19 GICPKHQEALK-------LFCE-VDEEAICVVCRE 45 (57)
T ss_dssp SBCTTTCCBCC-------EEET-TTTEEECHHHHH
T ss_pred CcChhhCceee-------EEcC-CCCcEEecccCC
Confidence 57999999998 9999 899999999975
No 144
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.61 E-value=2.7 Score=35.47 Aligned_cols=33 Identities=18% Similarity=0.560 Sum_probs=24.4
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
-.||-|...+.. .++-. .|||.||+.|...|..
T Consensus 23 ~~C~IC~~~~~~-----pv~~~-~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILRE-----PVCLG-GCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCSS-----CBCCC-SSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhhC-----ccEeC-CCCCHHHHHHHHHHhc
Confidence 689999887752 34442 3999999999888854
No 145
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=60.82 E-value=7.8 Score=39.96 Aligned_cols=32 Identities=25% Similarity=0.681 Sum_probs=23.4
Q ss_pred ecCCcccccccCcccCCCCCchhHHHHHHHhHhhhHhHHHHHhcCCCCCCCCcceee
Q 008581 248 CLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEK 304 (561)
Q Consensus 248 C~C~~~fC~~C~~~~H~p~~C~~~~~~~~k~~~~~~~~~wi~~ntK~CP~C~~~IEK 304 (561)
-.|||.||..|... |+. .....||.|+.+|..
T Consensus 348 lpCGH~FC~~Ci~~------------wl~-------------~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 348 EPCGHLMCTSCLTS------------WQE-------------SEGQGCPFCRCEIKG 379 (389)
T ss_dssp ETTCCEECHHHHHH------------HHH-------------HTCSBCTTTCCBCCE
T ss_pred eCCCChhhHHHHHH------------HHh-------------cCCCCCCCCCCccCC
Confidence 38999999998633 322 123789999998874
No 146
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.68 E-value=1.7 Score=32.43 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCC-CCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQG-CMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~G-Cnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
..||-|...+..... -..+.-. .|+|.||..|...|-..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 55 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 55 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc
Confidence 579999877664311 1222334 59999999999988643
No 147
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=60.27 E-value=2.3 Score=37.45 Aligned_cols=33 Identities=18% Similarity=0.623 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+. +.++. .|||.||..|...|-..
T Consensus 32 ~~C~IC~~~~~-----~pv~~--~CgH~FC~~Ci~~~~~~ 64 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQA--QCGHRYCSFCLASILSS 64 (141)
T ss_dssp GBCTTTCSBCS-----SEEEC--TTSCEEEHHHHHHHGGG
T ss_pred cCCCCCChhhc-----CcEEC--CCCCccCHHHHHHHHhc
Confidence 58999988775 23565 49999999999988653
No 148
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.90 E-value=11 Score=28.01 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 80 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
+.|.++.+ +|.++..|+..|+..+||++..++-.+.+
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 11 DCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34666666 59999999999999999999988776654
No 149
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.27 E-value=2.1 Score=33.29 Aligned_cols=33 Identities=27% Similarity=0.680 Sum_probs=24.0
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+.. .++- .|+|.||..|+..|-..
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSL--DCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCTTTCSCCSS-----CBCC--SSSCCBCTTHHHHHHHH
T ss_pred CCCCCCCcccCC-----ceeC--CCCCHHHHHHHHHHHHH
Confidence 589999887753 2333 49999999999887543
No 150
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=59.26 E-value=4.9 Score=32.21 Aligned_cols=47 Identities=30% Similarity=0.789 Sum_probs=33.6
Q ss_pred CccccccccccccCC---Cee-e-ccCCCccccccce--eccCCcccccccCCCCCCCcc
Q 008581 139 RELTCGICFDTYSCD---KVV-S-AACGHPFCRACWR--VNDGPGCLMLRCPDPSCCAAV 191 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~---~~~-~-l~CgH~fC~~C~~--i~~g~~~~~i~CP~~~C~~~v 191 (561)
....|.||-+....+ +++ . -.|+-..|+.|+. +.+| .-.||+ |+..+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG----~q~Cpq--CktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG----TQNCPQ--CKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS----CSSCTT--TCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc----Cccccc--cCCcc
Confidence 457899999985332 233 2 2488899999999 6665 457998 87765
No 151
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.25 E-value=2 Score=32.81 Aligned_cols=37 Identities=27% Similarity=0.651 Sum_probs=25.6
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
..||-|...+..... .+.. .|+|.||+.|+..|-...
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~--~C~H~f~~~Ci~~~~~~~ 52 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGIC--PCKHAFHRKCLIKWLEVR 52 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEE--TTTEEEEHHHHHHHHHHC
T ss_pred CCCcCCCcccCCCCc--EEEc--CCCCEecHHHHHHHHHcC
Confidence 579999887653321 2233 399999999999886543
No 152
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=57.58 E-value=21 Score=26.26 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 75 KCQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 75 ~~~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
.....+.|.++.+.=......++..|+..+||+++.++..+.++
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 34556778888876334577889999999999999998877653
No 153
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=57.41 E-value=4.6 Score=30.50 Aligned_cols=30 Identities=30% Similarity=0.758 Sum_probs=23.8
Q ss_pred CCccccccccccccCCCeeeccC-CCccccccce
Q 008581 138 ARELTCGICFDTYSCDKVVSAAC-GHPFCRACWR 170 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~ 170 (561)
....-|.||.++- .+.-+.| |-.||..||+
T Consensus 6 ee~pWC~ICneDA---tlrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 6 SGLPWCCICNEDA---TLRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CCCSSCTTTCSCC---CEEETTTTSEEECSSHHH
T ss_pred cCCCeeEEeCCCC---eEEecCCCCceehHHHHH
Confidence 3456799999862 4566789 7899999999
No 154
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=56.82 E-value=1.9 Score=34.62 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=25.7
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
..||-|...+.... .+.-. .|+|.||+.|...|-...
T Consensus 41 ~~C~IC~~~~~~~~---~~~~l-~C~H~Fh~~Ci~~wl~~~ 77 (91)
T 2l0b_A 41 MCCPICCSEYVKGD---VATEL-PCHHYFHKPCVSIWLQKS 77 (91)
T ss_dssp SEETTTTEECCTTC---EEEEE-TTTEEEEHHHHHHHHTTT
T ss_pred CCCcccChhhcCCC---cEEec-CCCChHHHHHHHHHHHcC
Confidence 57999987665322 12333 499999999999997543
No 155
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=56.27 E-value=2.9 Score=35.27 Aligned_cols=34 Identities=24% Similarity=0.629 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
-.||-|...+.. .++. .|||.||+.|...|-..+
T Consensus 19 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~~ 52 (118)
T 3hct_A 19 YECPICLMALRE-----AVQT--PCGHRFCKACIIKSIRDA 52 (118)
T ss_dssp GBCTTTCSBCSS-----EEEC--TTSCEEEHHHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEEC--CcCChhhHHHHHHHHhhC
Confidence 589999987762 2554 499999999999886543
No 156
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=56.08 E-value=6.5 Score=30.20 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=21.5
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchh
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~F 321 (561)
-.||.|+.+++-+.+=..+.|. .|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCN-ADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcC-CCCcee
Confidence 5899999999877665678887 676544
No 157
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=55.85 E-value=6.1 Score=30.18 Aligned_cols=28 Identities=25% Similarity=0.612 Sum_probs=20.8
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchh
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~F 321 (561)
-.||.|+.+++-..+=..+.|. .|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICK-GDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5899999999876655668887 565444
No 158
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=55.28 E-value=6.1 Score=31.05 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=24.5
Q ss_pred CCCCCC-CcceeecCCCCceEeCCCCcchhhhhhhc
Q 008581 293 KPCPKC-KRPIEKNQGCMHMTCSPPCKFEFCWLCLG 327 (561)
Q Consensus 293 K~CP~C-~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 327 (561)
..||.+ +.+++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 46 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCV-SDDQLICALCKL 46 (84)
T ss_dssp CCCSSCSSSCCC-------EEET-TTTEEECHHHHH
T ss_pred CcCcCcCCcccc-------EEcC-CCCceEcccCcC
Confidence 589999 68898 9999 899999999975
No 159
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=54.78 E-value=22 Score=25.43 Aligned_cols=41 Identities=5% Similarity=0.111 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 76 CQQEDDITKVSTVLSI-SRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 76 ~~~~~~i~~v~~vl~i-~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
....+.|.++.++ |. +...+...|+..+||++..++..+.+
T Consensus 9 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 9 VRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3456678888776 56 99999999999999999998876654
No 160
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=53.89 E-value=3.3 Score=34.69 Aligned_cols=33 Identities=21% Similarity=0.606 Sum_probs=26.2
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|...+.. .++ . .|||.||+.|...|-..
T Consensus 24 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVE-T-SCKHLFCRICILRCLKV 56 (116)
T ss_dssp TBCTTTCSBCSS-----EEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEE-c-CCCCcccHHHHHHHHhH
Confidence 689999988752 355 3 59999999999988755
No 161
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=53.47 E-value=93 Score=31.59 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008581 450 QFFEYLQGEAESGLERLHQCAEKELL 475 (561)
Q Consensus 450 ~~fe~~Q~~~e~~~e~L~~~le~~~~ 475 (561)
..|-..-.+||.+++.|.+.|...|.
T Consensus 109 n~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 109 NTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444445555555555555544443
No 162
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=53.39 E-value=7.3 Score=29.84 Aligned_cols=28 Identities=18% Similarity=0.519 Sum_probs=20.9
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchh
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~F 321 (561)
-.||.|+.+++-..+=+.+.|. .|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISK-GAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEET-TTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 6899999999866555668887 665544
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=53.23 E-value=8.2 Score=37.23 Aligned_cols=15 Identities=7% Similarity=-0.073 Sum_probs=11.6
Q ss_pred eEecCCcccccccCc
Q 008581 246 VSCLCSYNFCWNCTE 260 (561)
Q Consensus 246 v~C~C~~~fC~~C~~ 260 (561)
|+-.||++||..|..
T Consensus 222 v~~~~gh~f~~~~i~ 236 (281)
T 2c2l_A 222 CITPSGITYDRKDIE 236 (281)
T ss_dssp EECSSCCEEETTHHH
T ss_pred eECCCCCEECHHHHH
Confidence 444799999999863
No 164
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=53.07 E-value=23 Score=25.30 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 79 EDDITKVSTVLSI-SRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 79 ~~~i~~v~~vl~i-~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
...|.++.++ |. +...+...|+..+||++..++..+.+|
T Consensus 13 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 13 QQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 4567777765 66 999999999999999999988776653
No 165
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.04 E-value=7.5 Score=32.75 Aligned_cols=30 Identities=17% Similarity=0.556 Sum_probs=23.5
Q ss_pred cCCCCCCCCcceeec----CCCCceEeCCCCcchh
Q 008581 291 NSKPCPKCKRPIEKN----QGCMHMTCSPPCKFEF 321 (561)
Q Consensus 291 ntK~CP~C~~~IEK~----~GCnhm~C~~~C~~~F 321 (561)
..+-||.|+.++.-. .|.+.+.|+ +|++.+
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~-~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACR-NCDYSE 36 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECS-SSCCEE
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECC-CCCCeE
Confidence 347899999887543 368899999 899866
No 166
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=51.98 E-value=12 Score=33.36 Aligned_cols=35 Identities=26% Similarity=0.635 Sum_probs=24.6
Q ss_pred CCCCCchhHHHHHHHhHhhhHhHHHHHhcCCCCCCCCcceeecCCCCceEeCCCCc
Q 008581 263 HRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCK 318 (561)
Q Consensus 263 H~p~~C~~~~~~~~k~~~~~~~~~wi~~ntK~CP~C~~~IEK~~GCnhm~C~~~C~ 318 (561)
-+|+.|+...+- ..+ |.||+|.-+++ ++-|+..||
T Consensus 96 lRPAicdkAR~K----------Qq~-----k~CpnC~g~L~------~~~Crgh~G 130 (174)
T 1odh_A 96 LRPAICDKARQK----------QQR-----KSCPNCNGPLK------LIPCRGHGG 130 (174)
T ss_dssp ECCCSSHHHHHH----------HHH-----SBCSSSCCBEE------EECCCTBTT
T ss_pred echHHHHHHHHH----------hhc-----CCCCCCCccee------eEeccCcCC
Confidence 468899876531 112 99999999998 488884454
No 167
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=50.80 E-value=23 Score=27.26 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 81 DITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 81 ~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
.|.++.+ .|.++..|+..|+..+||++..++-.+.++
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 32 SVDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 3555544 489999999999999999999888766654
No 168
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.60 E-value=16 Score=27.31 Aligned_cols=37 Identities=5% Similarity=0.150 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 80 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
+.|.++.+ ++.+...|+..|+..+||++..++-.+.+
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 44666665 58999999999999999999888766543
No 169
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=50.54 E-value=3.4 Score=34.44 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.3
Q ss_pred CCcchhhhhhhcCccC
Q 008581 316 PCKFEFCWLCLGAWSD 331 (561)
Q Consensus 316 ~C~~~FCw~C~~~w~~ 331 (561)
.|+|.||..|+..|-.
T Consensus 60 ~C~H~Fh~~Ci~~wl~ 75 (114)
T 1v87_A 60 KCSHAFHLLCLLAMYC 75 (114)
T ss_dssp SSCCEECHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHH
Confidence 5889999999988863
No 170
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=49.85 E-value=36 Score=24.90 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhc
Q 008581 76 CQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (561)
Q Consensus 76 ~~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (561)
..+.+.|..++...++...-+...|...+||-++.+..|..
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35778899999999999999999999999999999887743
No 171
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=48.33 E-value=9.6 Score=29.00 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=21.2
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchh
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~F 321 (561)
-.||.|+.+++-...=+.+.|. .|+..|
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~-~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNE-RLNLAY 38 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcC-CCCccc
Confidence 5899999999876555668887 676544
No 172
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=47.97 E-value=10 Score=34.90 Aligned_cols=67 Identities=16% Similarity=0.382 Sum_probs=41.0
Q ss_pred cccccccccccCCC----eee-ccCCCccccccceeccC--------CcccccccCCCCCCCcchhhHHhhhCChHHHHH
Q 008581 141 LTCGICFDTYSCDK----VVS-AACGHPFCRACWRVNDG--------PGCLMLRCPDPSCCAAVGQDMIDMLASDEDKKK 207 (561)
Q Consensus 141 ~~C~IC~e~~~~~~----~~~-l~CgH~fC~~C~~i~~g--------~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~k 207 (561)
..||||-..+..++ ++. -.|..-|-..|..|.+. +....+.||. |...-++. ++..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCHH-HHHHHHHHHHHH
Confidence 46999998886654 444 34888888888885431 1112689998 87765543 444444444444
Q ss_pred HHH
Q 008581 208 YSR 210 (561)
Q Consensus 208 y~~ 210 (561)
+.+
T Consensus 80 l~~ 82 (183)
T 3lqh_A 80 LKQ 82 (183)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 173
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.81 E-value=96 Score=32.83 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=6.9
Q ss_pred HHHHhHHHHHHHHHHH
Q 008581 458 EAESGLERLHQCAEKE 473 (561)
Q Consensus 458 ~~e~~~e~L~~~le~~ 473 (561)
+|++.++.|.+.|...
T Consensus 114 ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 174
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=47.66 E-value=6 Score=30.66 Aligned_cols=27 Identities=26% Similarity=0.701 Sum_probs=21.3
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhh
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLC 325 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C 325 (561)
.+|..|++.+...+ +.|+ |+..||-.=
T Consensus 26 nRC~~CrKkvgL~g----f~Cr--Cg~~FCs~H 52 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCR--CGNLFCGLH 52 (74)
T ss_dssp TBCSSSCCBCGGGC----EECT--TSCEECSSS
T ss_pred CcChhhCCcccccC----eecC--CCCEechhc
Confidence 58999999877542 7898 999999653
No 175
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.61 E-value=6 Score=30.91 Aligned_cols=37 Identities=19% Similarity=0.662 Sum_probs=22.1
Q ss_pred CCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 294 PCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 294 ~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
.||-|..... .+.+..+.- .|+|.|+..|+..|-..+
T Consensus 28 ~C~iC~~~~~-~~~~~~~~~--~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 28 ACLRCQAENK-QEDCVVVWG--ECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp CCTTHHHHTC-TTTCCEEEE--TTSCEEEHHHHHHHTTTC
T ss_pred cCcccccccC-CCceEEEeC--CCCCccChHHHHHHHHhC
Confidence 4444443322 233333443 399999999999997554
No 176
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=47.57 E-value=7.1 Score=33.99 Aligned_cols=30 Identities=13% Similarity=0.466 Sum_probs=23.0
Q ss_pred cCCCCCCCCcceee-c---CCCCceEeCCCCcchh
Q 008581 291 NSKPCPKCKRPIEK-N---QGCMHMTCSPPCKFEF 321 (561)
Q Consensus 291 ntK~CP~C~~~IEK-~---~GCnhm~C~~~C~~~F 321 (561)
..+-||.|+.++-- . .+.+.+.|+ +|++.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~Cr-tCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCS-SSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECC-CCCCcE
Confidence 35899999987642 2 368899999 898865
No 177
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=47.57 E-value=39 Score=23.41 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhhHhhhc
Q 008581 76 CQQEDDITKVSTVLSI-SRVDASILLRHYNWSVSKVHDAWFA 116 (561)
Q Consensus 76 ~~~~~~i~~v~~vl~i-~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (561)
......|.++.+. |. +...+...|+..+||+++.++..+.
T Consensus 5 ~~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 5 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4556778888776 65 5677799999999999999887654
No 178
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.49 E-value=14 Score=28.21 Aligned_cols=35 Identities=26% Similarity=0.636 Sum_probs=20.8
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
..||-|...+.... .+.-. .|+|.||+.|+..|-.
T Consensus 16 ~~C~IC~~~~~~~~---~~~~~-~C~H~fc~~Ci~~~~~ 50 (78)
T 2ect_A 16 LECPVCKEDYALGE---SVRQL-PCNHLFHDSCIVPWLE 50 (78)
T ss_dssp CCCTTTTSCCCTTS---CEEEC-TTSCEEETTTTHHHHT
T ss_pred CCCeeCCccccCCC---CEEEe-CCCCeecHHHHHHHHH
Confidence 68999977664221 11222 3777777777776654
No 179
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=46.42 E-value=43 Score=24.63 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhh
Q 008581 77 QQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWF 115 (561)
Q Consensus 77 ~~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~ 115 (561)
.+.+.|..++...++...-+...|...+||-++.+..|.
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567889999999999999999999999999999988763
No 180
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=46.11 E-value=1.1 Score=46.87 Aligned_cols=8 Identities=25% Similarity=1.028 Sum_probs=4.1
Q ss_pred cCCCCCCC
Q 008581 8 FYSGEAMD 15 (561)
Q Consensus 8 ~~~~~~~~ 15 (561)
||-|..++
T Consensus 359 yftGea~~ 366 (417)
T 2ayu_A 359 WFTGAALE 366 (417)
T ss_dssp HHHSHHHH
T ss_pred Hhcccccc
Confidence 56664433
No 181
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=45.48 E-value=7.3 Score=37.39 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=34.8
Q ss_pred CccccccccccccCCCeeeccCCCccccccce-eccCCcccccccCCCCCCCcchhh
Q 008581 139 RELTCGICFDTYSCDKVVSAACGHPFCRACWR-VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
....|.||.+..... .....|+|.|-..|+. +.... ....||. |+..++..
T Consensus 179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSN--AEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTC--SSCBCTT--TCCBCCSC
T ss_pred CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhC--CCCCCCC--CCCCCCCC
Confidence 367899999987432 2222399999999999 43222 2578997 98876543
No 182
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=44.45 E-value=7.6 Score=29.21 Aligned_cols=28 Identities=21% Similarity=0.679 Sum_probs=21.6
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcchhhhhh
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLC 325 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C 325 (561)
+.+|..|++.+... -+.|+ |+..||-.-
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT----GFMCR--CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT----CEECS--SSCEECTTT
T ss_pred CCcChhhCCccCcc----CEEee--cCCEecccc
Confidence 37899999887643 27897 999999654
No 183
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.27 E-value=27 Score=25.20 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 79 EDDITKVSTVLSI-SRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 79 ~~~i~~v~~vl~i-~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
.+.|.++.++ +. ....++..|+..+||+++.++..+..+
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4467777766 66 455569999999999999998877543
No 184
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=43.79 E-value=5.9 Score=35.56 Aligned_cols=33 Identities=21% Similarity=0.570 Sum_probs=26.3
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccCC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 332 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~h 332 (561)
-.||-|..++.. .+++. |||.||..|...|...
T Consensus 19 ~~C~IC~~~~~~-----pv~~~--CgH~fC~~Ci~~~~~~ 51 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTP--CGHRFCKACIIKSIRD 51 (170)
T ss_dssp GBCTTTCSBCSS-----EEECT--TSCEEEHHHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEECC--CCCHHHHHHHHHHHHh
Confidence 589999988763 36664 9999999999988643
No 185
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.77 E-value=33 Score=25.63 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-ChhhhhHhhhcC
Q 008581 81 DITKVSTVLSISRVDASILLRHYNW-SVSKVHDAWFAD 117 (561)
Q Consensus 81 ~i~~v~~vl~i~~~~a~~LL~~~~W-~~~~l~e~~~~~ 117 (561)
.|.++.+ ++.++..|+..|+..+| |++..++-.+.+
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 4666666 59999999999999999 999888776654
No 186
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.45 E-value=35 Score=27.14 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 79 ~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
.+.|.++.+ ++.++..|+..|+..+||++..++-.+.++
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 556777776 599999999999999999999988777654
No 187
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.28 E-value=1.6e+02 Score=29.78 Aligned_cols=34 Identities=12% Similarity=-0.138 Sum_probs=17.1
Q ss_pred HHHHHHhhcccceecccCccchhhhhHHHHHHHHHHHh
Q 008581 425 VECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESG 462 (561)
Q Consensus 425 ~~~r~~L~~sy~~~yy~~~~~~~~~~~fe~~Q~~~e~~ 462 (561)
.-||+--+-+++.++-..-+ .+.-+.+|++|+..
T Consensus 158 d~c~~~C~~sC~~~l~~~vD----~e~ye~qqKQL~qv 191 (390)
T 1deq_A 158 DIKIRSCKGSCSRALEHKVD----LEDYKNQQKQLEQV 191 (390)
T ss_pred HHHhcccccccchhhhhhcc----HHHHHHHHHHHHhh
Confidence 55666666666555432111 34455666664433
No 188
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.08 E-value=38 Score=26.78 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 81 DITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 81 ~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
.|.++.+ +|.+...|+..|+..+||++...+-.+.+
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4566665 59999999999999999999988776654
No 189
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=41.15 E-value=2.2e+02 Score=26.28 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhccc
Q 008581 503 NYFENLVRALENGLA 517 (561)
Q Consensus 503 ~~~~~~~~~~e~~l~ 517 (561)
.|+.+|...|++-++
T Consensus 191 ~y~~kl~~~i~~~~~ 205 (207)
T 3bvo_A 191 RYFSNIEEKIKLKKI 205 (207)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 677788887776554
No 190
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=41.02 E-value=13 Score=33.86 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=20.4
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcc
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKF 319 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~ 319 (561)
-.||+|+.++.+.+ ++|.|. .|+.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp-~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCP-ECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECS-SSCC
T ss_pred ecccccCCceEECC--CEEECC-CCCC
Confidence 48999999998876 999998 7864
No 191
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.95 E-value=46 Score=25.73 Aligned_cols=39 Identities=5% Similarity=0.105 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 78 QEDDITKVSTVLSI-SRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 78 ~~~~i~~v~~vl~i-~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
..+.|.++.++ |. +...++..|+..+||+++.++..|..
T Consensus 29 ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 29 YQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 34567777776 55 67888999999999999999887654
No 192
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=40.87 E-value=5.7 Score=33.75 Aligned_cols=26 Identities=19% Similarity=0.611 Sum_probs=0.0
Q ss_pred CCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 306 QGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 306 ~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
+.|.-+.-. |+|.|+..|...|-...
T Consensus 75 ~~~~v~~~~--C~H~FH~~CI~~Wl~~~ 100 (117)
T 4a0k_B 75 EECTVAWGV--CNHAFHFHCISRWLKTR 100 (117)
T ss_dssp ----------------------------
T ss_pred cccccccCC--cCceEcHHHHHHHHHcC
Confidence 345555554 99999999999996543
No 193
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.69 E-value=8.5 Score=28.96 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=21.0
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcchhhhhh
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLC 325 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C 325 (561)
+.+|..|++.+... -+.|+ |+..||-.-
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKCK--CGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS----CEECT--TSCEECSSS
T ss_pred CCcChhhCCccccc----CeEee--cCCEecccC
Confidence 36899999876632 26897 999999653
No 194
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=40.20 E-value=19 Score=36.54 Aligned_cols=26 Identities=27% Similarity=0.751 Sum_probs=22.0
Q ss_pred cCCcc-cccccCcccCCCCCchhHHHHHHHhHhhhHhHHHHHhcCCCCCCCCcceee
Q 008581 249 LCSYN-FCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEK 304 (561)
Q Consensus 249 ~C~~~-fC~~C~~~~H~p~~C~~~~~~~~k~~~~~~~~~wi~~ntK~CP~C~~~IEK 304 (561)
.|||. ||..|...+ +.||-|+.+|.+
T Consensus 312 pCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred CCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 89999 999997532 589999999875
No 195
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=39.09 E-value=24 Score=28.26 Aligned_cols=36 Identities=22% Similarity=0.606 Sum_probs=25.6
Q ss_pred cCCCCccccccccccccCC--CeeeccCCCccccccce
Q 008581 135 FSNARELTCGICFDTYSCD--KVVSAACGHPFCRACWR 170 (561)
Q Consensus 135 ~~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~~ 170 (561)
.++.....|.+|...|... .-.--.||+.||..|..
T Consensus 15 ~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 15 VPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp CCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred cccccCCcCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 4445567899999877432 22335699999999998
No 196
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=38.98 E-value=11 Score=32.22 Aligned_cols=29 Identities=14% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCCCCCCCcceeec----CCCCceEeCCCCcchh
Q 008581 292 SKPCPKCKRPIEKN----QGCMHMTCSPPCKFEF 321 (561)
Q Consensus 292 tK~CP~C~~~IEK~----~GCnhm~C~~~C~~~F 321 (561)
.+-||.|+.++.-. .+.+.+.|+ .|++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~-~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECS-SSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECC-cCCCee
Confidence 37899999776632 668889999 898865
No 197
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=38.39 E-value=12 Score=36.54 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=20.4
Q ss_pred CCCCCCCcceeec--CCCCceEeCCCCcc
Q 008581 293 KPCPKCKRPIEKN--QGCMHMTCSPPCKF 319 (561)
Q Consensus 293 K~CP~C~~~IEK~--~GCnhm~C~~~C~~ 319 (561)
++||.|+.+|++. +|=.-.+|. .|+.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP-VCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCCC
Confidence 7999999999974 666667776 6763
No 198
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=38.36 E-value=14 Score=35.98 Aligned_cols=26 Identities=38% Similarity=0.939 Sum_probs=20.0
Q ss_pred CCCCCCCcceeec--CCCCceEeCCCCcc
Q 008581 293 KPCPKCKRPIEKN--QGCMHMTCSPPCKF 319 (561)
Q Consensus 293 K~CP~C~~~IEK~--~GCnhm~C~~~C~~ 319 (561)
++||.|+.+|++. +|=.--+|. .|+.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCP-TCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECT-TTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCCC
Confidence 7999999999974 666666776 6753
No 199
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=38.19 E-value=11 Score=30.50 Aligned_cols=46 Identities=22% Similarity=0.532 Sum_probs=32.3
Q ss_pred CCccccccccccccCCCeeeccC-CCccccccce--eccCCcccccccCCCCCCCcchhh
Q 008581 138 ARELTCGICFDTYSCDKVVSAAC-GHPFCRACWR--VNDGPGCLMLRCPDPSCCAAVGQD 194 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~--i~~g~~~~~i~CP~~~C~~~v~~~ 194 (561)
-+.+.|-.|+-.. +.. +.| .|+.|..|+. +.. .=+||. |+..++..
T Consensus 26 ~G~~nCKsCWf~~--k~L--V~C~dHYLCl~CLtlmL~~-----SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFEN--KGL--VECNNHYLCLNCLTLLLSV-----SNRCPI--CKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCC--SSE--EECSSCEEEHHHHHHTCSS-----SSEETT--TTEECCCC
T ss_pred cCcccChhhcccc--CCe--eeecchhhHHHHHHHHHhh-----ccCCcc--cCCcCCcc
Confidence 3468899999653 323 344 6999999999 332 347988 98887654
No 200
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=37.54 E-value=13 Score=36.44 Aligned_cols=25 Identities=40% Similarity=0.927 Sum_probs=19.8
Q ss_pred CCCCCCCcceee--cCCCCceEeCCCCc
Q 008581 293 KPCPKCKRPIEK--NQGCMHMTCSPPCK 318 (561)
Q Consensus 293 K~CP~C~~~IEK--~~GCnhm~C~~~C~ 318 (561)
++||.|+.+|+| .+|=.--+|. .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCP-RCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECC-CCC
Confidence 699999999997 3666666776 675
No 201
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=37.27 E-value=14 Score=25.85 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 80 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
+.|.++.+ +|.++..|...|...+||.+...+-.|++
T Consensus 6 eaI~rL~~-mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 6 EAIERLKA-LGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp HHHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34555543 48999999999999999999888776654
No 202
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=37.15 E-value=9.6 Score=30.10 Aligned_cols=29 Identities=31% Similarity=0.698 Sum_probs=22.3
Q ss_pred CCCCCCcceeecCCCCceEeCCCCc--chhhhhhhcCccC
Q 008581 294 PCPKCKRPIEKNQGCMHMTCSPPCK--FEFCWLCLGAWSD 331 (561)
Q Consensus 294 ~CP~C~~~IEK~~GCnhm~C~~~C~--~~FCw~C~~~w~~ 331 (561)
.||.|+.++|+ |. .|| -.||-.|.+..++
T Consensus 33 fCPeCgq~Le~--------lk-ACGA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LK-ACGAVDYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCCCE--------EE-ETTEEEECCTTTTCCCCT
T ss_pred cCcchhhHHHH--------HH-hcCCcCeeeccCCCEeec
Confidence 79999999995 65 576 5688888776553
No 203
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=36.91 E-value=23 Score=25.99 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=16.2
Q ss_pred CCCCCCCc-ceeecCCCCceEeCCCCc
Q 008581 293 KPCPKCKR-PIEKNQGCMHMTCSPPCK 318 (561)
Q Consensus 293 K~CP~C~~-~IEK~~GCnhm~C~~~C~ 318 (561)
..||.|+. .|.....=.-+.|. .||
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~-~CG 37 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICP-ECG 37 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECT-TTC
T ss_pred ccCcCCCCCceeEeCCCCeEEeC-CCC
Confidence 58999976 56554444457776 564
No 204
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=36.64 E-value=14 Score=36.16 Aligned_cols=25 Identities=28% Similarity=0.761 Sum_probs=19.7
Q ss_pred CCCCCCCcceeec--CCCCceEeCCCCc
Q 008581 293 KPCPKCKRPIEKN--QGCMHMTCSPPCK 318 (561)
Q Consensus 293 K~CP~C~~~IEK~--~GCnhm~C~~~C~ 318 (561)
++||.|+.+|++. +|=.--+|. .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCR-QCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999974 666666776 675
No 205
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=36.45 E-value=14 Score=35.98 Aligned_cols=25 Identities=32% Similarity=0.759 Sum_probs=19.9
Q ss_pred CCCCCCCcceeec--CCCCceEeCCCCc
Q 008581 293 KPCPKCKRPIEKN--QGCMHMTCSPPCK 318 (561)
Q Consensus 293 K~CP~C~~~IEK~--~GCnhm~C~~~C~ 318 (561)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCP-GCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECC-CCC
Confidence 6999999999974 666667776 675
No 206
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=35.76 E-value=17 Score=31.20 Aligned_cols=32 Identities=25% Similarity=0.877 Sum_probs=21.3
Q ss_pred HHhcCCCCCCCCcceeecCCCCceEeCCCCcchh
Q 008581 288 ILANSKPCPKCKRPIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 288 i~~ntK~CP~C~~~IEK~~GCnhm~C~~~C~~~F 321 (561)
+..+.-+||+|+...-=..|=+ ..|. .|+++|
T Consensus 23 ~M~~lP~CP~C~seytYeDg~l-~vCP-eC~hEW 54 (138)
T 2akl_A 23 MVSTLPPCPQCNSEYTYEDGAL-LVCP-ECAHEW 54 (138)
T ss_dssp CCCCSCCCTTTCCCCCEECSSS-EEET-TTTEEE
T ss_pred ccccCCCCCCCCCcceEecCCe-EECC-cccccc
Confidence 3344579999997665545543 6786 677765
No 207
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.39 E-value=4.2e+02 Score=28.07 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008581 450 QFFEYLQGEAESGLERLHQCAEKELLQFL 478 (561)
Q Consensus 450 ~~fe~~Q~~~e~~~e~L~~~le~~~~~~~ 478 (561)
..+.-||..|+.++.++. .||.+|..-+
T Consensus 131 snIrvLQsnLedq~~kIQ-RLEvDIdiqi 158 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMK-RLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 444555555555555543 4666665433
No 208
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.00 E-value=13 Score=29.55 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=21.4
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcchhhhhh
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLC 325 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C 325 (561)
+.+|..|++.+-.. +-+.|+ |+..||-.-
T Consensus 25 ~~rC~~C~kkvgl~---~~f~Cr--Cg~~FC~~H 53 (85)
T 1wff_A 25 MKHCFLCGKKTGLA---TSFECR--CGNNFCASH 53 (85)
T ss_dssp CCBCSSSCCBCSSS---SCEECT--TCCEECTTT
T ss_pred CccchhhCCeeccc---CCeEcC--CCCEecccC
Confidence 36899999866532 237897 999999653
No 209
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.98 E-value=12 Score=30.16 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
-.||-|..++. +.++-. .|||.||-.|...|-.
T Consensus 8 ~~CPI~~~~~~-----dPV~~~-~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNK-VCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CBCTTTCSBCS-----SEEEES-SSCCEEEHHHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcC-CCCCeecHHHHHHHHH
Confidence 47999998776 456664 4999999999988754
No 210
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.85 E-value=13 Score=28.48 Aligned_cols=25 Identities=16% Similarity=0.535 Sum_probs=17.0
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcc
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKF 319 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~ 319 (561)
-.|+.|+..++...+ ..+.|+ .||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp-~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCK-DCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCS-SSCC
T ss_pred EECCCCCCcceeCCC-CCccCC-CCCc
Confidence 479999988775433 446776 6765
No 211
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=33.71 E-value=26 Score=33.30 Aligned_cols=36 Identities=31% Similarity=0.855 Sum_probs=0.0
Q ss_pred hHHHHHhcCCCCCCCCc-ceee---cCCCCceEeCCCCcchh
Q 008581 284 NMNWILANSKPCPKCKR-PIEK---NQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 284 ~~~wi~~ntK~CP~C~~-~IEK---~~GCnhm~C~~~C~~~F 321 (561)
+..|+..|. .||+|+. +|.+ |.-=.-.+|. .|+-+|
T Consensus 27 TE~Wv~~n~-yCPnCG~~~l~~f~nN~PVaDF~C~-~C~Eey 66 (257)
T 4esj_A 27 TEDWVYRQS-YCPNCGNNPLNHFENNRPVADFYCN-HCSEEF 66 (257)
T ss_dssp HHHHHHHHC-CCTTTCCSSCEEC----CCCEEECT-TTCCEE
T ss_pred hHHHHHHCC-cCCCCCChhhhhccCCCcccccccC-Ccchhh
No 212
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.08 E-value=13 Score=28.78 Aligned_cols=28 Identities=21% Similarity=0.668 Sum_probs=21.3
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcchhhhhh
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLC 325 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C 325 (561)
+.+|..|++.+... -+.|+ |+..||-.=
T Consensus 25 ~~RC~~C~kkvgL~----~f~Cr--Cg~~FCs~H 52 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT----GFKCR--CGSTFCGTH 52 (74)
T ss_dssp CCBCSSSCCBCTTT----CEECT--TSCEECTTT
T ss_pred CccchhhcCccccc----ceEec--cCCEecccc
Confidence 36899998877643 37897 999999653
No 213
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=32.37 E-value=11 Score=31.39 Aligned_cols=26 Identities=19% Similarity=0.611 Sum_probs=18.0
Q ss_pred CCCCceEeCCCCcchhhhhhhcCccCCC
Q 008581 306 QGCMHMTCSPPCKFEFCWLCLGAWSDHG 333 (561)
Q Consensus 306 ~GCnhm~C~~~C~~~FCw~C~~~w~~h~ 333 (561)
++|.-+.-. |+|.|+..|...|-..+
T Consensus 64 ~~~~~~~~~--C~H~FH~~Ci~~Wl~~~ 89 (106)
T 3dpl_R 64 EECTVAWGV--CNHAFHFHCISRWLKTR 89 (106)
T ss_dssp -CCCEEEET--TSCEEEHHHHHHHHTTC
T ss_pred ccceEeecc--cCcEECHHHHHHHHHcC
Confidence 344444444 99999999999996543
No 214
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=32.22 E-value=98 Score=23.03 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhh
Q 008581 78 QEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAW 114 (561)
Q Consensus 78 ~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~ 114 (561)
|...++....-++..|+-|+-||---+|+....+..|
T Consensus 17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~ 53 (73)
T 2l2d_A 17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY 53 (73)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhH
Confidence 4556777778899999999999999999999998877
No 215
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=31.52 E-value=46 Score=26.13 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=26.5
Q ss_pred ccCCCCccccccccccccCCC--eeeccCCCccccccce
Q 008581 134 EFSNARELTCGICFDTYSCDK--VVSAACGHPFCRACWR 170 (561)
Q Consensus 134 ~~~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~ 170 (561)
..++.....|.+|...|.... -.--.||+.||..|..
T Consensus 15 W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp CCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred cccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 345566778999998874321 2234699999999988
No 216
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.72 E-value=12 Score=28.43 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=20.1
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcchhhhhh
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLC 325 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C 325 (561)
..+|..|++.+...+ =.-+.|+ |+..||-.=
T Consensus 15 ~~rC~~C~kk~gL~~-~egf~Cr--Cg~~FC~~H 45 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQ-QELGSCR--CGYVFCMLH 45 (67)
T ss_dssp TTBCSSSCCBCCHHH-HHHHCCS--SSCCCCTTT
T ss_pred CCcchhhCCeecccc-cCceEec--CCCEehhcc
Confidence 368999998877210 0003687 999999653
No 217
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.41 E-value=75 Score=21.79 Aligned_cols=36 Identities=8% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 80 ~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
+.|.++.+ .|.++..|...|+..+ |++...+-.+.+
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 11 QQLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 34666665 5899999999999887 888777665554
No 218
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=30.10 E-value=56 Score=30.14 Aligned_cols=37 Identities=14% Similarity=0.359 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhc
Q 008581 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (561)
Q Consensus 79 ~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (561)
.+.|.++.+ .|.+++.|+..|...+||.+...+..+.
T Consensus 164 eekV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCA-MGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 455555544 4999999999999999999999887654
No 219
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.07 E-value=22 Score=26.68 Aligned_cols=31 Identities=32% Similarity=0.789 Sum_probs=23.3
Q ss_pred ceecCCCCCCCeeecccCCCCceeEe-cCCcccccccCc
Q 008581 223 TKWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTE 260 (561)
Q Consensus 223 ~~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 260 (561)
...|+.++|... ....+.| .|+..||..++.
T Consensus 12 ~~~Cs~~~Ck~~-------~ll~f~C~~C~~~FC~~HR~ 43 (63)
T 1x4v_A 12 TNKCERAGCRQR-------EMMKLTCERCSRNFCIKHRH 43 (63)
T ss_dssp CCCCCSTTCCCC-------CSSCCBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCCCC-------CccceECCCCCcccCcccCC
Confidence 357988889854 1235689 699999999774
No 220
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=30.06 E-value=51 Score=29.99 Aligned_cols=30 Identities=0% Similarity=-0.250 Sum_probs=18.7
Q ss_pred CCceecCCCCCCCeeecccCCCCceeEecCCcccccccC
Q 008581 221 RKTKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCT 259 (561)
Q Consensus 221 ~~~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 259 (561)
+....||- |..++. ..|.-.||+.||..|.
T Consensus 104 p~~f~CPI--~~elm~-------DPV~~~~Ghtfer~~I 133 (179)
T 2f42_A 104 PDYLCGKI--SFELMR-------EPCITPSGITYDRKDI 133 (179)
T ss_dssp CGGGBCTT--TCSBCS-------SEEECTTSCEEEHHHH
T ss_pred cHhhcccC--ccccCC-------CCeECCCCCEECHHHH
Confidence 34467876 554432 1233389999999875
No 221
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.92 E-value=58 Score=25.03 Aligned_cols=37 Identities=3% Similarity=-0.077 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CChhhhhHhhhcC
Q 008581 80 DDITKVSTVLSISRVDASILLRHYN-WSVSKVHDAWFAD 117 (561)
Q Consensus 80 ~~i~~v~~vl~i~~~~a~~LL~~~~-W~~~~l~e~~~~~ 117 (561)
+.|.++.+ +|.++..|+..|+..+ ||++..++-.+.+
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 11 SVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 34666666 5999999999999887 6899888776654
No 222
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=29.83 E-value=33 Score=26.82 Aligned_cols=36 Identities=25% Similarity=0.675 Sum_probs=24.8
Q ss_pred cCCCCccccccccccccCCC--eeeccCCCccccccce
Q 008581 135 FSNARELTCGICFDTYSCDK--VVSAACGHPFCRACWR 170 (561)
Q Consensus 135 ~~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~ 170 (561)
.++.....|.+|...|.... -.--.||..||..|..
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred ccCccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 34455667999998774321 1234699999999988
No 223
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=29.04 E-value=64 Score=31.06 Aligned_cols=37 Identities=14% Similarity=0.323 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhc
Q 008581 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (561)
Q Consensus 79 ~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (561)
.+.|.++.+ .|.+...|+..|...+|+.+..++..+.
T Consensus 216 ~~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 445555544 4999999999999999999999987664
No 224
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=28.76 E-value=21 Score=28.49 Aligned_cols=28 Identities=25% Similarity=0.712 Sum_probs=19.8
Q ss_pred CCCCCCCcc------eeecCCCCceEeCCCCcchh
Q 008581 293 KPCPKCKRP------IEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 293 K~CP~C~~~------IEK~~GCnhm~C~~~C~~~F 321 (561)
-.||.|+.. |.|..|=-++.|+ .|+..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~-~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCT-VCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEES-SSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcc-cCCCeE
Confidence 579988765 3345667778898 787665
No 225
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.56 E-value=17 Score=26.87 Aligned_cols=35 Identities=23% Similarity=0.737 Sum_probs=24.0
Q ss_pred eecCCCCCCCeeecccCCCCceeEe-cCCcccccccCcccCCC
Q 008581 224 KWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEAHRP 265 (561)
Q Consensus 224 ~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p 265 (561)
..|-+ |...+. ......| .|+..||..|-.-.|..
T Consensus 16 ~~C~~--C~~~~~-----~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 16 RFCYG--CQGELK-----DQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEETT--TTEECT-----TSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred Ccccc--cCcccC-----CCccEECCccCcCcccchhHHHHhh
Confidence 35754 776552 1113579 99999999998777754
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.41 E-value=3.9e+02 Score=28.80 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 008581 449 RQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDS 521 (561)
Q Consensus 449 ~~~fe~~Q~~~e~~~e~L~~~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~ 521 (561)
.+.++.+++..+..+..|.+.+|++...++.... ..+..++..-..+++.-|++=.+.+.+.+.++.-
T Consensus 514 ~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 514 EQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE-----RTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888899888888877664221 1233445555555666667777777777666653
No 227
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=28.18 E-value=23 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=22.1
Q ss_pred ceecCCCCCCCeeecccCCCCceeEe-cCCcccccc
Q 008581 223 TKWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWN 257 (561)
Q Consensus 223 ~~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 257 (561)
.+.||++.|+.-+... .......| .|+..+++.
T Consensus 118 ~~~c~~~~cg~g~fma--~h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLA--NHKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEE--ECSSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEec--ccCCCcccCCCceEEEec
Confidence 4789999998643222 11235689 999998874
No 228
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.97 E-value=31 Score=29.39 Aligned_cols=40 Identities=20% Similarity=0.541 Sum_probs=27.8
Q ss_pred HHHHh-cCCCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcC
Q 008581 286 NWILA-NSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 328 (561)
Q Consensus 286 ~wi~~-ntK~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 328 (561)
.|+.. ....|+.|+...-- .--.-.|+ .||.-||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR-~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSV--TVRRHHCR-QCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCS--SSCCEECT-TTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCcccc--ccccccCC-CCCeEEChHHhCC
Confidence 46543 35789999987541 12235799 8999999999753
No 229
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.32 E-value=23 Score=34.46 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=26.2
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcCccC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 331 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~w~~ 331 (561)
-.||-|..++. +.++.. .|||.||-.|...|-.
T Consensus 182 l~CPIcl~~f~-----DPVts~-~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISR-KCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp SBCTTTSSBCS-----SEEEES-SSCCEEEHHHHHHHST
T ss_pred eECcCccCccc-----CCeeeC-CCCCcccHHHHHHHHH
Confidence 58999998885 557775 6999999999887643
No 230
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.01 E-value=3.6e+02 Score=24.55 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008581 450 QFFEYLQGEAESGLERLHQCAEKELL 475 (561)
Q Consensus 450 ~~fe~~Q~~~e~~~e~L~~~le~~~~ 475 (561)
.-+++.+..+...+|+.. +||.++.
T Consensus 130 ~SleD~e~kln~aiEr~a-lLE~El~ 154 (189)
T 2v71_A 130 MSLEDFEQRLNQAIERNA-FLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 334555555555555543 4455444
No 231
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.95 E-value=39 Score=28.25 Aligned_cols=31 Identities=16% Similarity=0.522 Sum_probs=21.9
Q ss_pred CceecCCCCCCCeeecccCC--CCceeEe-cCCccc
Q 008581 222 KTKWCPAPGCEHAIDFAAGS--GNFDVSC-LCSYNF 254 (561)
Q Consensus 222 ~~~~CP~~~C~~~i~~~~~~--~~~~v~C-~C~~~f 254 (561)
.+.+||. |+..+...... +...+.| .|++.+
T Consensus 3 ~m~FCp~--Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCIE--CNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCSS--SCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCcC--CCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 3578997 99998776432 3456788 888765
No 232
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.54 E-value=35 Score=29.12 Aligned_cols=35 Identities=23% Similarity=0.571 Sum_probs=24.7
Q ss_pred CCCCccccccccccccCC--CeeeccCCCccccccce
Q 008581 136 SNARELTCGICFDTYSCD--KVVSAACGHPFCRACWR 170 (561)
Q Consensus 136 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~~ 170 (561)
++.....|.+|...|... .-.--.||+.||..|..
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 444556899999877432 12234699999999988
No 233
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=25.30 E-value=27 Score=32.17 Aligned_cols=28 Identities=32% Similarity=0.656 Sum_probs=18.6
Q ss_pred CCCCCCCcce-eecCCCCceEeCCCCcchhh
Q 008581 293 KPCPKCKRPI-EKNQGCMHMTCSPPCKFEFC 322 (561)
Q Consensus 293 K~CP~C~~~I-EK~~GCnhm~C~~~C~~~FC 322 (561)
+.||+|+..+ -....+.| +|. .|++-|+
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~-~CG-kC~~t~~ 142 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRH-YCG-KCHLTLK 142 (189)
T ss_dssp EECSTTCSSCEEEECSSCE-EET-TTCCCBC
T ss_pred ccCCccCCCccccCccCCC-ccC-CceeEEE
Confidence 7999999654 33555555 777 6766553
No 234
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=24.31 E-value=2e+02 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008581 487 FNDFRTKLAGLTSVTKNYFENLVRALENGL 516 (561)
Q Consensus 487 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l 516 (561)
+.++|.+|.-.+.-++.....-+..|..-|
T Consensus 130 ~Eelr~~L~Py~eelr~kl~~~~eeLr~~l 159 (191)
T 1nfn_A 130 TEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 335555555444444444444444444444
No 235
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.13 E-value=88 Score=24.62 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHc-CCChhhhhHhhhcC
Q 008581 81 DITKVSTVLSISRVDASILLRHY-NWSVSKVHDAWFAD 117 (561)
Q Consensus 81 ~i~~v~~vl~i~~~~a~~LL~~~-~W~~~~l~e~~~~~ 117 (561)
.|.++.+ +|.++..|+..|+.. +||++..++-.|.+
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 32 IVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4556655 599999999888877 59999888766653
No 236
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=23.96 E-value=86 Score=26.04 Aligned_cols=41 Identities=7% Similarity=-0.018 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcCh
Q 008581 78 QEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (561)
Q Consensus 78 ~~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (561)
..+.|.++.++=......++..|+..+||+++.++..+..+
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 35567777664444678999999999999999999877654
No 237
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.89 E-value=68 Score=23.82 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHc-CCChhhhhHhhhcC
Q 008581 81 DITKVSTVLSISRVDASILLRHY-NWSVSKVHDAWFAD 117 (561)
Q Consensus 81 ~i~~v~~vl~i~~~~a~~LL~~~-~W~~~~l~e~~~~~ 117 (561)
.|.++.+ +|.++..|+..|+.. +||++..++-.+.+
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 12 ALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 4556655 689999999999988 79999888766543
No 238
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=23.79 E-value=1.8e+02 Score=26.44 Aligned_cols=69 Identities=10% Similarity=0.062 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcccchh-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 008581 452 FEYLQGEAESGLERLHQCAEKELLQFLNDESQS-KE-FNDFRTKLAGLTSVTKNYFENLVRALENGLADVD 520 (561)
Q Consensus 452 fe~~Q~~~e~~~e~L~~~le~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~ 520 (561)
+|.+...++-.++.|...++..++++.....|. ++ -..+..++..|...+.-|.+.+-..+..++.++.
T Consensus 108 lEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eelk~~l~~~veel~ 178 (191)
T 1nfn_A 108 MEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIR 178 (191)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333333332 11 1233334445555555555555555555555443
No 239
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.69 E-value=45 Score=24.22 Aligned_cols=26 Identities=27% Similarity=0.894 Sum_probs=18.7
Q ss_pred CCCCCCCcceeecCCCCceEeCC-CCcch
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSP-PCKFE 320 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~-~C~~~ 320 (561)
-.||.|+.+++-.. +.+.|.+ .|+..
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~ 37 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLA 37 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcE
Confidence 58999999988766 6677851 36543
No 240
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=23.51 E-value=1.7e+02 Score=22.95 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=37.2
Q ss_pred ecHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 69 LREADIKCQQEDDITKVSTVLS--ISRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 69 lt~~~i~~~~~~~i~~v~~vl~--i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
|+..+ ..+...-+.+|.+|+| ||.....-....+++|+++.++.++..
T Consensus 26 Ls~~d-~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 26 LSEID-QARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp CCHHH-HHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 55533 3456778899999998 678888778889999999999887643
No 241
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.30 E-value=36 Score=27.09 Aligned_cols=35 Identities=31% Similarity=0.670 Sum_probs=25.7
Q ss_pred CceecCCCCCCCeeecccCCCCceeEe-cCCcccccccCc-ccC
Q 008581 222 KTKWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTE-EAH 263 (561)
Q Consensus 222 ~~~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~-~~H 263 (561)
....|+.++|.... ...+.| .|+..||..++. +.|
T Consensus 24 ~~~~C~~~~Ck~~~-------~l~f~C~~C~~~FC~~HR~~e~H 60 (86)
T 1wfe_A 24 KSYSCSFKGCTDVE-------LVAVICPYCEKNFCLRHRHQSDH 60 (86)
T ss_dssp CCEECCSTTCCCEE-------SSCEECTTTCCEECGGGCSTGGG
T ss_pred CCCCCCCcCCCCCC-------ccceECCCCCcccccccCCccCC
Confidence 34679999998652 235789 799999999774 345
No 242
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.03 E-value=25 Score=22.95 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=9.5
Q ss_pred Cccccccccccc
Q 008581 139 RELTCGICFDTY 150 (561)
Q Consensus 139 ~~~~C~IC~e~~ 150 (561)
..|.||||+..+
T Consensus 4 EGFiCP~C~~~l 15 (34)
T 3mjh_B 4 EGFICPQCMKSL 15 (34)
T ss_dssp EEEECTTTCCEE
T ss_pred cccCCcHHHHHc
Confidence 458999998766
No 243
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=22.76 E-value=35 Score=28.95 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=22.2
Q ss_pred CCCCccccccccccccCC--CeeeccCCCccccccce
Q 008581 136 SNARELTCGICFDTYSCD--KVVSAACGHPFCRACWR 170 (561)
Q Consensus 136 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~~ 170 (561)
|......|..|-..|... .-.--.||..||..|..
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~ 51 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSS 51 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEE
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhC
Confidence 445567899998877321 12234699999999988
No 244
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.07 E-value=3e+02 Score=22.24 Aligned_cols=47 Identities=17% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCccccccccccccCCCeee-ccCCCccccccceeccCC-cccccccCC
Q 008581 138 ARELTCGICFDTYSCDKVVS-AACGHPFCRACWRVNDGP-GCLMLRCPD 184 (561)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~i~~g~-~~~~i~CP~ 184 (561)
.....|.||.+.-...+++. ..|+..|...|+.+...+ ......||.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~ 53 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPE 53 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTT
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCc
Confidence 34667999987643233333 568889999998822111 113566776
No 245
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=22.04 E-value=44 Score=21.93 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=17.9
Q ss_pred CCCCCCcc---eeecCCCCceEeCCCCcch
Q 008581 294 PCPKCKRP---IEKNQGCMHMTCSPPCKFE 320 (561)
Q Consensus 294 ~CP~C~~~---IEK~~GCnhm~C~~~C~~~ 320 (561)
.||.|+.| +.+..+=-.+.|. .||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~-aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCM-ACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEE-TTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhh-cCCCc
Confidence 58889876 4455566668887 78753
No 246
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.76 E-value=77 Score=24.73 Aligned_cols=36 Identities=28% Similarity=0.622 Sum_probs=25.4
Q ss_pred cCCCCccccccccccccCCC--eeeccCCCccccccce
Q 008581 135 FSNARELTCGICFDTYSCDK--VVSAACGHPFCRACWR 170 (561)
Q Consensus 135 ~~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~ 170 (561)
.++.....|.+|...|.... -.--.||..||..|..
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 44555678999998773221 1234699999999987
No 247
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.39 E-value=26 Score=25.10 Aligned_cols=24 Identities=17% Similarity=0.494 Sum_probs=14.6
Q ss_pred CCCCCCCCcceeecCCCCceEeCCCCcch
Q 008581 292 SKPCPKCKRPIEKNQGCMHMTCSPPCKFE 320 (561)
Q Consensus 292 tK~CP~C~~~IEK~~GCnhm~C~~~C~~~ 320 (561)
.+.||+|+..+- =.--.|+ .||+.
T Consensus 14 k~iCpkC~a~~~----~gaw~Cr-KCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNP----WGAKKCR-KCGYK 37 (51)
T ss_dssp EEECTTTCCEEC----TTCSSCS-SSSSC
T ss_pred CccCCCCCCcCC----CCceecC-CCCCc
Confidence 378999988722 2224566 56654
No 248
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.18 E-value=33 Score=25.38 Aligned_cols=22 Identities=36% Similarity=0.886 Sum_probs=14.2
Q ss_pred cCCCCCCCCcceeecCCCCceEeCCCCc
Q 008581 291 NSKPCPKCKRPIEKNQGCMHMTCSPPCK 318 (561)
Q Consensus 291 ntK~CP~C~~~IEK~~GCnhm~C~~~C~ 318 (561)
+.-.||+|+.+.. .|..|. .||
T Consensus 29 ~l~~c~~cGe~~~-----~H~vc~-~CG 50 (60)
T 3v2d_5 29 TLVPCPECKAMKP-----PHTVCP-ECG 50 (60)
T ss_dssp CCEECTTTCCEEC-----TTSCCT-TTC
T ss_pred ceeECCCCCCeec-----ceEEcC-CCC
Confidence 3468888888776 455555 455
No 249
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.00 E-value=38 Score=31.69 Aligned_cols=33 Identities=21% Similarity=0.585 Sum_probs=24.3
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 328 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 328 (561)
..|+.|+...- -.--.-.|+ .||.-||..|...
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr-~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCR-NCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECT-TTCCEECSTTSCE
T ss_pred CccCCCCCccC--CcccccccC-CcCCEEChHHhCC
Confidence 68999987653 112235799 8999999999753
No 250
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.89 E-value=36 Score=25.48 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=16.6
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchh
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 321 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~F 321 (561)
-.|..|+..++-..+ .-+.|+ .||+.+
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~-~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCR-ECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCS-SSCCCC
T ss_pred EECCCCCCeeecCCC-CceECC-CCCcEE
Confidence 467777777765433 446776 666543
No 251
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.83 E-value=1.3e+02 Score=21.69 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhh
Q 008581 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWF 115 (561)
Q Consensus 79 ~~~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~ 115 (561)
...+.++.+.=......-..+|+..+||+++.++...
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll 46 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELL 46 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3457777888888999999999999999999988754
No 252
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=20.53 E-value=37 Score=29.98 Aligned_cols=30 Identities=13% Similarity=0.371 Sum_probs=21.0
Q ss_pred CCCCC--CCcceeecCCCCceEeCCCCcchhhh
Q 008581 293 KPCPK--CKRPIEKNQGCMHMTCSPPCKFEFCW 323 (561)
Q Consensus 293 K~CP~--C~~~IEK~~GCnhm~C~~~C~~~FCw 323 (561)
+.||+ |+.-+.-..-=+-.+|. +|++-+++
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cg-kc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCG-KCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEES-SSSSCCEE
T ss_pred CcCCCccCCCceEecccCCCcccC-CCceEEEe
Confidence 79999 99866533222456898 89887764
No 253
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=20.23 E-value=1.2e+02 Score=25.60 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhhHhhhcC
Q 008581 81 DITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (561)
Q Consensus 81 ~i~~v~~vl~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (561)
.|.++.+ +|.++..|...|+..+||++...+-.+.+
T Consensus 81 ~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 81 IVAIITS-MGFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp HHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566665 59999999999999999999888766554
No 254
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=20.19 E-value=5.8e+02 Score=24.45 Aligned_cols=30 Identities=13% Similarity=0.044 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008581 449 RQFFEYLQGEAESGLERLHQCAEKELLQFL 478 (561)
Q Consensus 449 ~~~fe~~Q~~~e~~~e~L~~~le~~~~~~~ 478 (561)
...++.+...++..++.|...|+..+.+|.
T Consensus 153 ~~~~e~L~~ql~~~a~~L~~~l~~~~eeLr 182 (273)
T 3s84_A 153 NHQLEGLTFQMKKNAEELKARISASAEELR 182 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666666666655554443
No 255
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=20.09 E-value=40 Score=26.82 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=23.4
Q ss_pred CCCCCCCcceeecCCCCceEeCCCCcchhhhhhhcC
Q 008581 293 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 328 (561)
Q Consensus 293 K~CP~C~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 328 (561)
..|+.|+...--. --.-.|+ .||.-||..|...
T Consensus 10 ~~C~~C~~~F~~~--~RrHHCR-~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLF--KKEYGCK-NCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSS--SCEEECS-SSCCEEETTTSCE
T ss_pred CCCcCcCCcccCc--cccccCC-CCCCEEChhHcCC
Confidence 6788888765311 1225798 8999999999753
Done!