BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008583
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Query: 74 RFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENL-DEAHSSXXXXXXXXXXXXEECATL 132
R+ D ++N KI L R + LEVD +VN+ N +L +EC TL
Sbjct: 53 RYKKDKQLNEKISLLRSDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTL 112
Query: 133 GGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSI 192
C+TG AK+T Y LPA+ VIHTVGP + + L CY S L+LL+E+ L+S+
Sbjct: 113 QSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSV 172
Query: 193 AMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYF 252
A CI T YP E AA + + T+R +LE+ KDK+ ++ C D +IY+ LP YF
Sbjct: 173 AFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRLPHYF 232
Query: 253 P 253
P
Sbjct: 233 P 233
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 7/173 (4%)
Query: 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SXXXXXXXXXXXXEECATL----GGC 135
+ ++I++ +G+ L VD +VN+ N +L + C + G C
Sbjct: 1 MKTRIHVVQGDITKLAVDVIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQGDC 60
Query: 136 RTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 195
TG A +T A DLPA+ V+HTVGP + + L Y + L L+ N S+A
Sbjct: 61 PTGHAVITLAGDLPAKAVVHTVGPVWRGGEQN-EDQLLQDAYLNSLRLVAANSYTSVAFP 119
Query: 196 CIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLL 248
I T YPR AA +A++TV F+ + V F + +Y+RLL
Sbjct: 120 AISTGVYGYPRAAAAEIAVKTVSEFITRHALP-EQVYFVCYDEENAHLYERLL 171
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 83 SKIYLWRGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAK 141
++I + +G+ + D +VN+ N L A + EEC +G R G A
Sbjct: 2 ARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAA 61
Query: 142 VTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEA 201
VT A +LP R VIH + A+ + +S LE +E GLK++A + T
Sbjct: 62 VTGAGNLPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGV 117
Query: 202 KNYPREPAAHVAIRTVRR 219
P E A V + +++
Sbjct: 118 GGLPVEAVARVXLEEIKK 135
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 6/139 (4%)
Query: 94 NLEVDTVVNSTNENLDEAHS--SXXXXXXXXXXXXEECATLG-GCRTGMAKV--TNAYDL 148
N + D VVNS +L + S EE T+G G M V T++++L
Sbjct: 50 NAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSSWNL 109
Query: 149 PARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREP 208
R V+H V P++ T++ + R C+E+ LKSIA I T +P+
Sbjct: 110 DCRYVLHVVAPEWR-NGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNI 168
Query: 209 AAHVAIRTVRRFLEKQKDK 227
A + I V +F K + K
Sbjct: 169 FAELIISEVFKFSSKNQLK 187
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 89 RGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAKVTNAYD 147
+G+ + D +VN+ N L A + EEC +G R G A VT A +
Sbjct: 8 QGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGN 67
Query: 148 LPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 207
LP R VIH + A+ + +S LE +E GLK++A + P E
Sbjct: 68 LPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAE 123
Query: 208 PAAHVAIRTVRR 219
V + +++
Sbjct: 124 AVLRVMLEEIKK 135
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 89 RGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAKVTNAYD 147
+G+ + D +VN+ N L A + EEC +G R G A VT A +
Sbjct: 8 QGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGN 67
Query: 148 LPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 207
LP R VIH + A+ + +S LE +E GLK++A + P E
Sbjct: 68 LPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAE 123
Query: 208 PAAHVAIRTVRR 219
V + +++
Sbjct: 124 AVLRVMLEEIKK 135
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 89 RGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAKVTNAYD 147
+G+ + D +VN+ N L A + EEC +G R G A VT A +
Sbjct: 8 QGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGN 67
Query: 148 LPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 207
LP R VIH + A+ + +S LE +E GLK++A + P E
Sbjct: 68 LPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAE 123
Query: 208 PAAHVAIRTVRR 219
V + +++
Sbjct: 124 AVLRVMLEEIKK 135
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Query: 89 RGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAKVTNAYD 147
+G+ + D +VN+ N L A + EEC +G R G A VT A +
Sbjct: 8 QGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGN 67
Query: 148 LPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 207
LP R VIH + A+ + +S LE +E GLK++A + P E
Sbjct: 68 LPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAE 123
Query: 208 PAAHVAIRTVRR 219
V +++
Sbjct: 124 AVFRVXFEEIKK 135
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 83 SKIYLWRGNPWNLEVDTVVNSTNENLD-EAHSSXXXXXXXXXXXXEECATLGGCRTGMAK 141
++I +G+ + D +VN+ N L A + EEC +G R G A
Sbjct: 2 ARIRAVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAA 61
Query: 142 VTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEA 201
VT A +LP R VIH + A+ + +S LE +E GLK++A +
Sbjct: 62 VTGAGNLPVRYVIHAA----VLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWV 117
Query: 202 KNYPREPAAHVAIRTVRR 219
P E V +++
Sbjct: 118 GGLPAEAVLRVXDEEIKK 135
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 11/161 (6%)
Query: 91 NPWNLEVDTVVNSTNENLDEAHSSXXXXXXXXXXXXEECATL------GGCRTGMAKVTN 144
N EV+ ++N TN ++D E A L G A V+
Sbjct: 48 NLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE-AVLELRKKNGPLEVAGAAVSA 106
Query: 145 AYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNY 204
+ LPA+ VIH P + E L ++CL L + LKSIA I + +
Sbjct: 107 GHGLPAKFVIHCNSPVWGADK---CEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGF 163
Query: 205 PREPAAHVAIRTVRR-FLEKQKDKISAVVFCTTTASDTEIY 244
P++ AA + ++ + F+ I V F + IY
Sbjct: 164 PKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIY 204
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 140 AKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYT 199
A V+ + LPA+ VIH P + E L ++CL L + LKSIA I +
Sbjct: 81 AAVSAGHGLPAKFVIHCNSPVWG---SDKCEELLEKTVKNCLALADDRKLKSIAFPSIGS 137
Query: 200 EAKNYPREPAAHVAIRTVRR-FLEKQKDKISAVVFCTTTASDTEIY 244
+P++ AA + ++ + F+ I V F + IY
Sbjct: 138 GRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIY 183
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 140 AKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYT 199
A V+ + LPA+ VIH P + E L ++CL L + LKSIA I +
Sbjct: 99 AAVSAGHGLPAKFVIHCNSPVWGAD---KCEELLEKTVKNCLALADDKKLKSIAFPSIGS 155
Query: 200 EAKNYPREPAAHVAIRTVRR-FLEKQKDKISAVVFCTTTASDTEIY 244
+P++ AA + ++ + F+ I V F + IY
Sbjct: 156 GRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIY 201
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 5/147 (3%)
Query: 85 IYLWRGNPWNLEVDTVVNSTNENLDE-AHSSXXXXXXXXXXXXEECATL----GGCRTGM 139
+ + +G+ L VD VVN++NE+L + +C + G G
Sbjct: 39 LIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGN 98
Query: 140 AKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYT 199
A ++ A LP VIH VGP+++ L + L L + +SIA+ I +
Sbjct: 99 ATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISS 158
Query: 200 EAKNYPREPAAHVAIRTVRRFLEKQKD 226
+P + ++ + +KD
Sbjct: 159 GVFGFPLGRCVETIVSAIKENFQFKKD 185
>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|B Chain B, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|C Chain C, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|D Chain D, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
Length = 193
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 140 AKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYT 199
A V+ + L A+ VIH P++ E L ++CL + LKS+A +
Sbjct: 84 AAVSQSSGLAAKFVIHCHIPQWG---SDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPS 140
Query: 200 EAKNYPREPAAHVAIRTV 217
+P++ AA V ++ +
Sbjct: 141 GRNCFPKQTAAQVTLKAI 158
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 137 TGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGC 196
TG A++T ++VIH VGP + A L + Y + +L+ E+ +KS+A+
Sbjct: 394 TGTARMTVCL---GKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPL 450
Query: 197 IYT 199
+ T
Sbjct: 451 LST 453
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 134 GCRTGMAKVTNAYDLPARRVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKS 191
G TG+ +DLP +VIHT P Y + + E ++HC L+ G +
Sbjct: 161 GSLTGLELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEEQFVAHCVAELEALIEREGADT 220
Query: 192 IA 193
IA
Sbjct: 221 IA 222
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 152 RVIHTVGPK-YAVKYH--TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREP 208
R++ T G A+ H TAA A H +CL L++ S A G + EA+NY
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD----SAAPGTLDLEARNYDGLT 118
Query: 209 AAHVAIR-----TVRRFLEKQKDKISAV 231
A HVA+ TV+ LE+ D I AV
Sbjct: 119 ALHVAVNTECQETVQLLLERGAD-IDAV 145
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 150 ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYT 199
A+ +IH VGP + + L+ Y S +++ +N KS+A+ + T
Sbjct: 64 AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLST 113
>pdb|3P7Z|A Chain A, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
pdb|3P7Z|B Chain B, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
Length = 276
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 395 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV--YFHSA 452
+ I Y+ G G PV V F ++ + + +V+ +P KPY IV H+
Sbjct: 29 LSIFYQAGTSKAGNPVFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTG 88
Query: 453 ASLQLQPDL 461
S + + D
Sbjct: 89 PSNRFKTDF 97
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 134 GCRTGMAKVTNAYDLPARRVIHTVGPKYAVKY-HTAAENALS-HCYRSCLELLIENGLKS 191
G TG+ NA+DLP V+HT P Y + + +E S HC E ++ G ++
Sbjct: 162 GSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEEXILAEGPET 221
Query: 192 IA 193
IA
Sbjct: 222 IA 223
>pdb|3PEG|B Chain B, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
pdb|3PEG|A Chain A, Crystal Structure Of Neurofibromins Sec14-Ph Module
Containing A Patient Derived Duplication (Td)
Length = 290
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 395 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV 447
+ I Y+ G G P+ V F ++ + + +V+ +P KPY IV
Sbjct: 29 LSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIV 81
>pdb|2E2X|A Chain A, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
pdb|2E2X|B Chain B, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
Length = 277
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 395 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV--YFHSA 452
+ I Y+ G G P+ V F ++ + + +V+ +P KPY IV H+
Sbjct: 30 LSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTG 89
Query: 453 ASLQLQPDL 461
S + + D
Sbjct: 90 PSNRFKTDF 98
>pdb|2D4Q|A Chain A, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
pdb|2D4Q|B Chain B, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
Length = 257
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 395 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV--YFHSA 452
+ I Y+ G G P+ V F ++ + + +V+ +P KPY IV H+
Sbjct: 10 LSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTG 69
Query: 453 ASLQLQPDL 461
S + + D
Sbjct: 70 PSNRFKTDF 78
>pdb|3PG7|A Chain A, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
pdb|3PG7|B Chain B, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
Length = 256
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 395 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIV--YFHSA 452
+ I Y+ G G P+ V F ++ + + +V+ +P KPY IV H+
Sbjct: 10 LSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTG 69
Query: 453 ASLQLQPDL 461
S + + D
Sbjct: 70 PSNRFKTDF 78
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 368 LSAAEEYSLHSRYLAKANSLNLSEIAE 394
L AAEEYS++ +LAK N+ N + +A+
Sbjct: 183 LRAAEEYSMNLGFLAKGNASNDASLAD 209
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 368 LSAAEEYSLHSRYLAKANSLNLSEIAE 394
L AAEEYS++ +LAK N+ N + +A+
Sbjct: 183 LRAAEEYSMNLGFLAKGNASNDASLAD 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,017,007
Number of Sequences: 62578
Number of extensions: 548170
Number of successful extensions: 1161
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 29
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)