Query 008583
Match_columns 560
No_of_seqs 403 out of 1870
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 13:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 4.5E-44 9.7E-49 340.3 21.4 167 76-245 11-185 (186)
2 PRK04143 hypothetical protein; 100.0 1.5E-41 3.3E-46 339.2 21.2 170 81-251 81-262 (264)
3 cd02905 Macro_GDAP2_like Macro 100.0 3.8E-41 8.3E-46 308.3 17.2 138 84-221 2-140 (140)
4 cd02907 Macro_Af1521_BAL_like 100.0 4.4E-40 9.6E-45 313.6 21.7 170 82-251 1-175 (175)
5 cd02908 Macro_Appr_pase_like M 100.0 3.6E-40 7.7E-45 311.2 20.5 164 84-249 1-165 (165)
6 PRK00431 RNase III inhibitor; 100.0 5.9E-38 1.3E-42 299.5 20.7 168 81-250 1-173 (177)
7 cd02906 Macro_1 Macro domain, 100.0 1.8E-36 3.9E-41 280.1 15.8 135 84-218 1-147 (147)
8 COG2110 Predicted phosphatase 100.0 1.5E-35 3.2E-40 279.1 17.3 166 83-251 3-175 (179)
9 cd02903 Macro_BAL_like Macro d 100.0 7.1E-35 1.5E-39 266.7 16.7 133 84-220 2-137 (137)
10 KOG2633 Hismacro and SEC14 dom 100.0 1.1E-34 2.3E-39 274.0 14.9 180 69-257 19-199 (200)
11 cd03330 Macro_2 Macro domain, 100.0 1.2E-30 2.6E-35 237.7 16.5 131 84-217 1-132 (133)
12 cd02900 Macro_Appr_pase Macro 99.9 1.9E-26 4.1E-31 220.0 16.0 139 82-221 28-186 (186)
13 cd02749 Macro Macro domain, a 99.9 1.5E-25 3.3E-30 207.0 15.9 134 84-217 1-146 (147)
14 smart00506 A1pp Appr-1"-p proc 99.9 1.8E-25 4E-30 202.7 15.3 129 84-213 1-133 (133)
15 PRK13341 recombination factor 99.9 1.8E-27 3.9E-32 269.0 -0.8 173 77-253 469-707 (725)
16 PF13716 CRAL_TRIO_2: Divergen 99.9 1.6E-25 3.5E-30 207.4 8.8 143 396-540 2-149 (149)
17 PF01661 Macro: Macro domain; 99.9 1.8E-24 4E-29 191.8 12.1 113 101-213 1-118 (118)
18 KOG4406 CDC42 Rho GTPase-activ 99.9 2E-22 4.2E-27 206.3 14.0 172 389-560 71-247 (467)
19 smart00516 SEC14 Domain in hom 99.8 1.5E-20 3.2E-25 174.8 13.4 127 402-529 14-150 (158)
20 cd00170 SEC14 Sec14p-like lipi 99.8 1.9E-19 4.2E-24 165.4 12.0 135 396-530 9-152 (157)
21 cd02901 Macro_Poa1p_like Macro 99.8 2.5E-19 5.5E-24 164.4 12.7 133 84-219 1-139 (140)
22 PF00650 CRAL_TRIO: CRAL/TRIO 99.8 1E-18 2.2E-23 162.5 8.3 139 391-529 2-153 (159)
23 KOG1470 Phosphatidylinositol t 99.8 7.6E-18 1.6E-22 171.1 15.0 139 389-528 91-235 (324)
24 KOG1471 Phosphatidylinositol t 99.5 2.3E-13 4.9E-18 141.7 10.6 132 398-529 97-250 (317)
25 PHA02595 tk.4 hypothetical pro 99.4 2.1E-12 4.5E-17 120.6 14.7 130 84-216 2-140 (154)
26 PF14519 Macro_2: Macro-like d 98.4 1.4E-06 3E-11 87.4 10.5 140 83-223 42-216 (280)
27 cd03331 Macro_Poa1p_like_SNF2 98.1 0.0001 2.2E-09 68.6 14.5 129 85-215 2-147 (152)
28 KOG1826 Ras GTPase activating 97.8 7.3E-06 1.6E-10 97.1 1.9 183 360-543 1509-1710(2724)
29 TIGR02452 conserved hypothetic 97.1 0.0029 6.3E-08 64.2 9.7 157 82-239 55-255 (266)
30 PF10154 DUF2362: Uncharacteri 96.1 0.039 8.5E-07 60.6 10.9 118 135-253 372-503 (510)
31 COG4295 Uncharacterized protei 95.5 0.096 2.1E-06 50.7 9.5 83 168-251 197-281 (285)
32 KOG1826 Ras GTPase activating 46.6 46 0.001 42.2 6.9 125 360-487 1668-1803(2724)
33 PF01073 3Beta_HSD: 3-beta hyd 35.0 79 0.0017 32.3 5.8 46 150-195 67-114 (280)
34 PF03641 Lysine_decarbox: Poss 34.2 84 0.0018 28.3 5.2 63 461-523 64-133 (133)
35 PF11964 SpoIIAA-like: SpoIIAA 32.4 2.3E+02 0.0049 23.8 7.5 89 422-519 10-103 (109)
36 cd06155 eu_AANH_C_1 A group of 31.9 1.4E+02 0.003 25.3 6.0 49 205-253 23-74 (101)
37 KOG1502 Flavonol reductase/cin 31.4 86 0.0019 33.0 5.4 45 150-194 79-126 (327)
38 PHA00684 hypothetical protein 28.4 1.4E+02 0.0031 26.9 5.4 46 170-215 55-100 (128)
39 PLN02778 3,5-epimerase/4-reduc 26.8 1.1E+02 0.0023 31.4 5.2 46 149-194 57-108 (298)
40 PF01042 Ribonuc_L-PSP: Endori 25.3 3E+02 0.0066 24.0 7.2 51 205-255 40-93 (121)
41 PLN02214 cinnamoyl-CoA reducta 24.1 1.6E+02 0.0034 30.8 6.0 44 150-195 82-125 (342)
42 PLN02725 GDP-4-keto-6-deoxyman 23.5 1.4E+02 0.0031 30.0 5.4 46 149-194 49-98 (306)
43 PRK15181 Vi polysaccharide bio 22.2 1.2E+02 0.0026 31.7 4.6 53 150-203 91-146 (348)
44 cd06150 YjgF_YER057c_UK114_lik 21.9 2.6E+02 0.0056 23.8 5.9 50 205-254 26-78 (105)
45 cd00448 YjgF_YER057c_UK114_fam 21.0 2.2E+02 0.0048 23.7 5.3 49 206-254 30-81 (107)
46 cd08586 PI-PLCc_BcPLC_like Cat 21.0 1.1E+02 0.0023 31.5 3.8 69 210-281 75-147 (279)
47 PRK11401 putative endoribonucl 20.2 2.8E+02 0.006 24.7 5.9 48 206-253 46-96 (129)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=4.5e-44 Score=340.26 Aligned_cols=167 Identities=23% Similarity=0.388 Sum_probs=154.5
Q ss_pred ccccCCCCEEEEEEcCC--ccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeecCCC
Q 008583 76 PVDHEINSKIYLWRGNP--WNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDL 148 (560)
Q Consensus 76 ~~~~~~n~~I~i~~GDI--~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~~~vT~~~~L 148 (560)
....-.|.+|.||+||| |++++|||||+||++|.++|| ++||+++||++|++||+++ ++|++|++++|+||+|
T Consensus 11 ~~~~~~~~~i~i~~gDI~~t~~~vDaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a~~L 90 (186)
T cd02904 11 TKSLFLGQKLSLVQSDISIGSIDVEGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQAHGL 90 (186)
T ss_pred chhhcCCCEEEEEECCccccceeccEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccCCCC
Confidence 34455689999999999 999999999999999998876 5999999999999999865 7899999999999999
Q ss_pred CCCeEEEEcCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcC-CC
Q 008583 149 PARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DK 227 (560)
Q Consensus 149 ~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~-~~ 227 (560)
|||||||||||.|+.+ ..++.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++|+++++ ++
T Consensus 91 p~k~VIHtVgP~~~~~---~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~ 167 (186)
T cd02904 91 PAKFVIHCHSPQWGSD---KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSS 167 (186)
T ss_pred CCCEEEEeCCCCCCCC---chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999654 2468999999999999999999999999999999999999999999999999999874 67
Q ss_pred ccEEEEEecChhHHHHHH
Q 008583 228 ISAVVFCTTTASDTEIYK 245 (560)
Q Consensus 228 i~~V~fv~~~~~~~~~y~ 245 (560)
+++|+||+++++++++|.
T Consensus 168 l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 168 IKQIYFVLFDSESIGIYV 185 (186)
T ss_pred ccEEEEEECCHHHHHHhh
Confidence 999999999999999984
No 2
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=339.18 Aligned_cols=170 Identities=41% Similarity=0.635 Sum_probs=155.6
Q ss_pred CCCEEEEEEcCCccccccEEEEcCCcCCCCC-----C-chHHHHHhhChhHHHHHHHh-----CCCCCCCEEEeecCCCC
Q 008583 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEA-----H-SSPGLHAAAGPGLAEECATL-----GGCRTGMAKVTNAYDLP 149 (560)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVN~aN~~l~~~-----~-~~~aI~~~aG~~L~~e~~~~-----~~~~~G~~~vT~~~~L~ 149 (560)
.|.+|.||+||||++++|||||+||+.|.++ | ++++||++||++|++||+++ ..+++|++++|+||+||
T Consensus 81 ~~~~i~i~~GDIt~l~vDAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~iT~~~nLp 160 (264)
T PRK04143 81 KYDNIFLWQGDITRLKVDAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKITRAYNLP 160 (264)
T ss_pred CCCEEEEEECCcceeecCEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEEecCCCCC
Confidence 4789999999999999999999999999743 3 36899999999999999875 36899999999999999
Q ss_pred CCeEEEEcCCccCC-CCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCc
Q 008583 150 ARRVIHTVGPKYAV-KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKI 228 (560)
Q Consensus 150 ~k~IIH~VgP~~~~-~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~i 228 (560)
|+||||||||.|+. .......+.|++||++||++|.+++++|||||+||||++|||++.||++|++++++|++++++.
T Consensus 161 ~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~- 239 (264)
T PRK04143 161 AKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSK- 239 (264)
T ss_pred CCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-
Confidence 99999999999987 3444567899999999999999999999999999999999999999999999999999998765
Q ss_pred cEEEEEecChhHHHHHHHHhhhc
Q 008583 229 SAVVFCTTTASDTEIYKRLLPLY 251 (560)
Q Consensus 229 ~~V~fv~~~~~~~~~y~~~l~~y 251 (560)
.+|+|++++++++++|+++|..+
T Consensus 240 ~~Vif~vf~~~d~~iy~~~l~~~ 262 (264)
T PRK04143 240 LKVVFNVFTDEDLELYQKALNKE 262 (264)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHh
Confidence 78999999999999999998643
No 3
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=3.8e-41 Score=308.29 Aligned_cols=138 Identities=61% Similarity=0.948 Sum_probs=133.4
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeecCCCCCCeEEEEcCCccC
Q 008583 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (560)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (560)
+|.||+|||+++++|||||++|++|.+++| +++|+++||++|++||+++++|++|++++|+||+||||||||+|||+|+
T Consensus 2 ki~l~~GdIt~~~vDaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~~~~~G~~~~T~~~~L~~k~VIH~vgP~~~ 81 (140)
T cd02905 2 RIVLWEGDICNLNVDAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLGGCRTGEAKLTKGYNLPARFIIHTVGPKYN 81 (140)
T ss_pred eEEEEeCccCcccCCEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCcEEEecCCCCCccEEEEecCCccC
Confidence 689999999999999999999999987765 6999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHH
Q 008583 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (560)
Q Consensus 163 ~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl 221 (560)
.++.++++++|++||++||++|.+++++|||||+||||++|||++++|++|+++|++||
T Consensus 82 ~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 82 VKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 98888888999999999999999999999999999999999999999999999999995
No 4
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=4.4e-40 Score=313.57 Aligned_cols=170 Identities=26% Similarity=0.426 Sum_probs=160.5
Q ss_pred CCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeecCCCCCCeEEEE
Q 008583 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHT 156 (560)
Q Consensus 82 n~~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH~ 156 (560)
|.+|+||+|||+++++|||||++|+++.+++| +++|+++||++|++||+++ ++|++|++++|++|+|+||||||+
T Consensus 1 ~~~i~i~~GdI~~~~~DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~~~~L~~k~IiH~ 80 (175)
T cd02907 1 GVTLSVIKGDITRFPVDAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTSAGKLPCKYVIHA 80 (175)
T ss_pred CcEEEEEECCcceeecCEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCCCEEEEe
Confidence 57899999999999999999999999998776 6899999999999999764 899999999999999999999999
Q ss_pred cCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEec
Q 008583 157 VGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTT 236 (560)
Q Consensus 157 VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~i~~V~fv~~ 236 (560)
|+|.|+.+......+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++++++.+++|+||++
T Consensus 81 v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~I~~v~~ 160 (175)
T cd02907 81 VGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKEIYLVDY 160 (175)
T ss_pred CCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEEC
Confidence 99999988766678999999999999999999999999999999999999999999999999999998778999999999
Q ss_pred ChhHHHHHHHHhhhc
Q 008583 237 TASDTEIYKRLLPLY 251 (560)
Q Consensus 237 ~~~~~~~y~~~l~~y 251 (560)
+++++++|++.|..|
T Consensus 161 ~~~~~~~~~~al~~~ 175 (175)
T cd02907 161 DEQTVEAFEKALEVF 175 (175)
T ss_pred CHHHHHHHHHHHhhC
Confidence 999999999988754
No 5
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=3.6e-40 Score=311.24 Aligned_cols=164 Identities=45% Similarity=0.721 Sum_probs=154.8
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeecCCCCCCeEEEEcCCccC
Q 008583 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (560)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (560)
+|+||+|||+++++|||||++|++|.++|| +++|+++||++|++||++++++++|++++|++|+|+|+||||+|||.|+
T Consensus 1 ~i~i~~GdI~~~~~daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~~~~~G~~v~T~~~~l~~~~IiH~v~P~~~ 80 (165)
T cd02908 1 KIEIIQGDITKLEVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRGCPTGEAVITSGYNLPAKYVIHTVGPVWR 80 (165)
T ss_pred CeEEEecccceeecCEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCCEEEeeCCCCCCCEEEEEcCCccc
Confidence 589999999999999999999999998876 5999999999999999999999999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhHHH
Q 008583 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242 (560)
Q Consensus 163 ~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~ 242 (560)
.+ .....+.|++||++||+.|.+++++|||||+||||++|||++.+|++|++++++|+++ .+.+++|+||++++++++
T Consensus 81 ~~-~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~-~~~l~~V~~v~~~~~~~~ 158 (165)
T cd02908 81 GG-QHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEE-HDAIERVIFVCFSEEDYE 158 (165)
T ss_pred CC-CCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEeCCHHHHH
Confidence 76 3455789999999999999999999999999999999999999999999999999988 557999999999999999
Q ss_pred HHHHHhh
Q 008583 243 IYKRLLP 249 (560)
Q Consensus 243 ~y~~~l~ 249 (560)
+|+++|.
T Consensus 159 ~f~~~l~ 165 (165)
T cd02908 159 IYEKALS 165 (165)
T ss_pred HHHHHhC
Confidence 9998863
No 6
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=5.9e-38 Score=299.52 Aligned_cols=168 Identities=39% Similarity=0.593 Sum_probs=156.9
Q ss_pred CCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeecCCCCCCeEEE
Q 008583 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIH 155 (560)
Q Consensus 81 ~n~~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH 155 (560)
++.+|+|++|||+++++|||||++|+++.++|| +++|++++|++|++||+++ +++++|++++|++|+|+|+||||
T Consensus 1 ~~~~i~i~~Gdi~~~~~daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~~~~l~~~~IiH 80 (177)
T PRK00431 1 MGMRIEVVQGDITELEVDAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLPAKYVIH 80 (177)
T ss_pred CCcEEEEEeCCcccccCCEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCCCCCEEEE
Confidence 367999999999999999999999999998776 5999999999999999987 89999999999999999999999
Q ss_pred EcCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEe
Q 008583 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 235 (560)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~i~~V~fv~ 235 (560)
+|||.|+.+... ..+.|++||++||+.|.+++++|||||+||||++|||++.+|++|++++++|+++. ..+++|+||+
T Consensus 81 ~v~P~~~~~~~~-~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~-~~l~~I~~v~ 158 (177)
T PRK00431 81 TVGPVWRGGEDN-EAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRH-KSPEEVYFVC 158 (177)
T ss_pred ecCCeecCCCCc-HHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcC-CCcCEEEEEE
Confidence 999999876554 57899999999999999999999999999999999999999999999999998655 5799999999
Q ss_pred cChhHHHHHHHHhhh
Q 008583 236 TTASDTEIYKRLLPL 250 (560)
Q Consensus 236 ~~~~~~~~y~~~l~~ 250 (560)
++++++++|+++|..
T Consensus 159 ~~~~~~~~f~~~l~~ 173 (177)
T PRK00431 159 YDEEAYRLYERLLTQ 173 (177)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998863
No 7
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=1.8e-36 Score=280.08 Aligned_cols=135 Identities=44% Similarity=0.722 Sum_probs=124.3
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCC-----Cc-hHHHHHhhChhHHHHHHHh----C-CCCCCCEEEeecCCCCCCe
Q 008583 84 KIYLWRGNPWNLEVDTVVNSTNENLDEA-----HS-SPGLHAAAGPGLAEECATL----G-GCRTGMAKVTNAYDLPARR 152 (560)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVN~aN~~l~~~-----~~-~~aI~~~aG~~L~~e~~~~----~-~~~~G~~~vT~~~~L~~k~ 152 (560)
+|+||+|||+++++|||||++|++|.++ || +++|+++||++|++||+++ + .+++|++++|++|+|+|+|
T Consensus 1 ~i~v~~GdIt~~~~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~~~~L~~k~ 80 (147)
T cd02906 1 SIYLWKGDITTLKVDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITPGYNLPAKY 80 (147)
T ss_pred CeEEEECCcCCccCCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCE
Confidence 5889999999999999999999999743 44 5899999999999999875 3 6899999999999999999
Q ss_pred EEEEcCCccCCCCc-hhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHH
Q 008583 153 VIHTVGPKYAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 218 (560)
Q Consensus 153 IIH~VgP~~~~~~~-~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~ 218 (560)
|||||||+|..++. ....+.|++||++||+.|.+++++|||||+||||++|||++++|++|+++||
T Consensus 81 VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 81 VIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred EEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 99999999988764 3457899999999999999999999999999999999999999999999985
No 8
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=279.14 Aligned_cols=166 Identities=35% Similarity=0.544 Sum_probs=153.0
Q ss_pred CEEEEEEcCCccccccEEEEcCCcCCCCCCch-HHHHHhhChhHHHHHHHhC------CCCCCCEEEeecCCCCCCeEEE
Q 008583 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLG------GCRTGMAKVTNAYDLPARRVIH 155 (560)
Q Consensus 83 ~~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~~-~aI~~~aG~~L~~e~~~~~------~~~~G~~~vT~~~~L~~k~IIH 155 (560)
..|.+++|||+++.+|||||+||+.|.+|||+ .||++++|++|++||+++. ++++|++++|++|+|+++||||
T Consensus 3 ~~i~~v~GDIt~~~~daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~~ViH 82 (179)
T COG2110 3 TNIRVVQGDITKLEADAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAKYVIH 82 (179)
T ss_pred ceEEEEecccceeehhheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCCEEEe
Confidence 57999999999999999999999999998875 8999999999999998753 3677999999999999999999
Q ss_pred EcCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEe
Q 008583 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 235 (560)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~i~~V~fv~ 235 (560)
+|||.|..+.+ ...+.|..||+++|++|+++|++|||||+||||++|||++++|.++++++++|+.. ..+..|+|++
T Consensus 83 ~vgp~~~~g~~-~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~--~~~~~v~~v~ 159 (179)
T COG2110 83 TVGPSWRGGSK-DEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPE--ASIETVIFVV 159 (179)
T ss_pred cCCCcccCCCh-hHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhccc--ccccEEEEEe
Confidence 99999988844 34589999999999999999999999999999999999999999999999999976 4688999999
Q ss_pred cChhHHHHHHHHhhhc
Q 008583 236 TTASDTEIYKRLLPLY 251 (560)
Q Consensus 236 ~~~~~~~~y~~~l~~y 251 (560)
+++++...|+.++...
T Consensus 160 ~~~e~~~~~~~~~~~~ 175 (179)
T COG2110 160 YGEETARVYEELLSTH 175 (179)
T ss_pred cCchhHHHHHHHHhhh
Confidence 9999999999988654
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=7.1e-35 Score=266.75 Aligned_cols=133 Identities=27% Similarity=0.340 Sum_probs=124.9
Q ss_pred EEEEEEcCCccccccEEEEcCCcC-CCCCCc-hHHHHHhhChhHHHHHHHhCCCCC-CCEEEeecCCCCCCeEEEEcCCc
Q 008583 84 KIYLWRGNPWNLEVDTVVNSTNEN-LDEAHS-SPGLHAAAGPGLAEECATLGGCRT-GMAKVTNAYDLPARRVIHTVGPK 160 (560)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVN~aN~~-l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~-G~~~vT~~~~L~~k~IIH~VgP~ 160 (560)
+|+|++|||+++++|||||++|++ +.++|| +++|+++||+++++||++++.++. |++++|++|+|+||||||+|+|.
T Consensus 2 ~i~i~~GdI~~~~~DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~~~p~ 81 (137)
T cd02903 2 TLQVAKGDIEDETTDVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLPCKYVYHVVLPN 81 (137)
T ss_pred EEEEEeCccCCccCCEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecCCCCCCCEEEEecCCC
Confidence 689999999999999999999999 666555 689999999999999999988885 99999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHH
Q 008583 161 YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRF 220 (560)
Q Consensus 161 ~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~f 220 (560)
|..+ ..+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|
T Consensus 82 ~~~~----~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 82 WSNG----ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCCc----hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 9765 4678999999999999999999999999999999999999999999999986
No 10
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-34 Score=273.98 Aligned_cols=180 Identities=44% Similarity=0.665 Sum_probs=162.6
Q ss_pred CCCCCCcccccCCCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeecCC
Q 008583 69 NGMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYD 147 (560)
Q Consensus 69 ~~~~~~f~~~~~~n~~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~~~vT~~~~ 147 (560)
...-++|+++...|.+|.+|+||++.+++|||| |..|++ ..+||++|||++..||.++..|++|.+++|+|++
T Consensus 19 ~~~l~~f~~~~~~~~~i~lwr~d~~~l~v~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~ 92 (200)
T KOG2633|consen 19 ITSLEVFKIDKPDNGGISLWRGDGKTLEVDAVV------LLGGKGVDEAIHRAAGPELPLECAYLHGCRTGAAKSTGGYG 92 (200)
T ss_pred ccccchhhccCccccCeeEeecccccccceeee------eccCcchhHHHHHhcCCcchHHHHhhcCCCCCeeEecCCCC
Confidence 345689999999999999999999999999998 555554 5999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCC
Q 008583 148 LPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDK 227 (560)
Q Consensus 148 L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~ 227 (560)
||||+|||+|||+|...+.+++. .|+.||++||.+|.+++++|||||+|++|.+|||.+.||++.++++++|++++.+.
T Consensus 93 Lpak~vIHtvgP~~~~d~~~~~~-~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~~~d~ 171 (200)
T KOG2633|consen 93 LPAKRVIHTVGPRWKEDKLQECY-FLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVKNKDS 171 (200)
T ss_pred CceeEEEEecCchhhccchHHHH-HHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhhCCCc
Confidence 99999999999999998887766 89999999999999999999999999999999999999999999999999998754
Q ss_pred ccEEEEEecChhHHHHHHHHhhhcCCCChh
Q 008583 228 ISAVVFCTTTASDTEIYKRLLPLYFPRDKH 257 (560)
Q Consensus 228 i~~V~fv~~~~~~~~~y~~~l~~yfpr~~~ 257 (560)
. +++|.+.+.+.+.|..+++.|||++..
T Consensus 172 ~--l~~~~f~~~d~e~~~~~l~~~~~~~~~ 199 (200)
T KOG2633|consen 172 S--LKTVPFLDYDSESYGAYLPEYAPSDAK 199 (200)
T ss_pred e--EEEEEEeccCCchHHHHHhhhcccccc
Confidence 3 444445556778899999999998754
No 11
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.97 E-value=1.2e-30 Score=237.72 Aligned_cols=131 Identities=25% Similarity=0.371 Sum_probs=122.4
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeecCCCCCCeEEEEcCCccC
Q 008583 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (560)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (560)
.|++|+|||+++++|||||++|+.+.+++| +++|++++|+++++||.+.+.+++|++++|++++|+||||||+++|.+.
T Consensus 1 ~i~i~~GdI~~~~~DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~~~~~G~~~~t~~~~l~~k~Iih~~~~~~~ 80 (133)
T cd03330 1 ELEVVQGDITKVDADAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKAPIPVGEAVITGAGDLPARYVIHAATMEEP 80 (133)
T ss_pred CEEEEEcccccccCCEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCCeEEEEeCCCCCCCEEEEeCCCCCC
Confidence 378999999999999999999999998876 5999999999999999999999999999999999999999999999865
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHH
Q 008583 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTV 217 (560)
Q Consensus 163 ~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v 217 (560)
.. ...+.|++||++||+.|.+++++|||||+||||++|||++++|++|.++|
T Consensus 81 ~~---~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 81 GR---SSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred CC---CHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 42 34578999999999999999999999999999999999999999999886
No 12
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.94 E-value=1.9e-26 Score=219.99 Aligned_cols=139 Identities=15% Similarity=0.053 Sum_probs=118.2
Q ss_pred CCEEEEEEcCCccccccEEEEcCCcCCCCCCch-HHHHHhhC-hhHHHHHHH------hCCCCCCCEEEeecCCCC----
Q 008583 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAG-PGLAEECAT------LGGCRTGMAKVTNAYDLP---- 149 (560)
Q Consensus 82 n~~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~~-~aI~~~aG-~~L~~e~~~------~~~~~~G~~~vT~~~~L~---- 149 (560)
...|..+.+|++..++||||||||+.+.+|||. .||++++| ++|+++|++ .+.|++|++++|.+++|+
T Consensus 28 ~~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~~~~l~~~~~ 107 (186)
T cd02900 28 LETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVPLGRALLEKT 107 (186)
T ss_pred ceecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEecCCCCccccc
Confidence 344455555555556899999999999988875 89999999 689999865 279999999999999999
Q ss_pred ------CCeEEEEcCCccCCCCchhHHHHHHHHHHHHHHHHHHc--CCeeeeecccccCCCCCChHHHHHHHHHHHHHHH
Q 008583 150 ------ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIEN--GLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (560)
Q Consensus 150 ------~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~--~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl 221 (560)
++|||||+++++..... ...+.|++||+++|+.|.++ +++|||||+||||.+|||++++|++|+.+++.|+
T Consensus 108 ~~~~~~~~~iIHaPtm~~P~~~~-~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~ 186 (186)
T cd02900 108 IYCRWGIPYLIHAPTMRVPSPVI-TGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN 186 (186)
T ss_pred cccccCCCEEEEcCcccCCCCCC-CcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999998866642221 23478999999999999987 8999999999999999999999999999999884
No 13
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.93 E-value=1.5e-25 Score=206.98 Aligned_cols=134 Identities=34% Similarity=0.480 Sum_probs=124.2
Q ss_pred EEEEEEcCCcc-ccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCC---CCCCCEEEeecCCCC-CCeEEEEc
Q 008583 84 KIYLWRGNPWN-LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGG---CRTGMAKVTNAYDLP-ARRVIHTV 157 (560)
Q Consensus 84 ~I~i~~GDI~~-~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~~~---~~~G~~~vT~~~~L~-~k~IIH~V 157 (560)
+|++++|||++ .++|+|||++|+.+.+++| +.+|++++|+++++||++... +++|++++|++++++ ++||||++
T Consensus 1 ~i~~~~GDi~~~~~~d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~~~~~~~~~vih~~ 80 (147)
T cd02749 1 KIKVVSGDITKPLGSDAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLDGAKYLIHIV 80 (147)
T ss_pred CEEEEECCCCCCCCCCEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcCCCCCcCCEEEEeC
Confidence 47899999999 9999999999999887775 689999999999999988643 589999999999999 99999999
Q ss_pred CCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCC------ChHHHHHHHHHHH
Q 008583 158 GPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNY------PREPAAHVAIRTV 217 (560)
Q Consensus 158 gP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~------p~~~~A~i~l~~v 217 (560)
+|+|..++..++.+.|++||++||+.|.+++++|||||.||||.+|+ |++.++++|++++
T Consensus 81 ~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 81 GPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 99999876556678999999999999999999999999999999999 9999999999886
No 14
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.93 E-value=1.8e-25 Score=202.73 Aligned_cols=129 Identities=32% Similarity=0.473 Sum_probs=117.1
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhH-HHHHHHhC--CCCCCCEEEeecCCCCCCeEEEEcCC
Q 008583 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGL-AEECATLG--GCRTGMAKVTNAYDLPARRVIHTVGP 159 (560)
Q Consensus 84 ~I~i~~GDI~~~~vDaIVN~aN~~l~~~~~-~~aI~~~aG~~L-~~e~~~~~--~~~~G~~~vT~~~~L~~k~IIH~VgP 159 (560)
.|++++|||+.+++|||||++|.++.+++| +++|++++|+++ ++++++.. .+++|++++|+++++++++|||+++|
T Consensus 1 ~i~~~~Gdi~~~~~d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~Iih~~~p 80 (133)
T smart00506 1 ILKVVKGDITKPRADAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEGGNLPAKYVIHAVGP 80 (133)
T ss_pred CeEEEeCCCCcccCCEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecCCCCCCCEEEEeCCC
Confidence 378999999999999999999999998776 589999999996 66666543 79999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHH
Q 008583 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 213 (560)
Q Consensus 160 ~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~ 213 (560)
+|..++ ....+.|++||++||+.|.+++++||+||+||||++|+|++++++++
T Consensus 81 ~~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 81 RASGHS-NEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred CCCCCC-ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 998764 35678999999999999999999999999999999999999999864
No 15
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.93 E-value=1.8e-27 Score=269.00 Aligned_cols=173 Identities=22% Similarity=0.159 Sum_probs=157.3
Q ss_pred cccCCCCEEEEEE----cCCccccccEEEEcCCcCCCCCCch-HHHHHhhChhH---HHHHHH-----------------
Q 008583 77 VDHEINSKIYLWR----GNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGL---AEECAT----------------- 131 (560)
Q Consensus 77 ~~~~~n~~I~i~~----GDI~~~~vDaIVN~aN~~l~~~~~~-~aI~~~aG~~L---~~e~~~----------------- 131 (560)
.....+.++.+++ ||||.+++|||||+||.+|.+|+|+ ++|+++||+++ ++||++
T Consensus 469 ~~~~~~~~~~~~~~~~~~dit~~~~d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~ 548 (725)
T PRK13341 469 QLGQEGERLAILRDRLWSDITWQRHDRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLL 548 (725)
T ss_pred HHhhcccHHHHHHHHHhccccccccceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCcccc
Confidence 3444568899999 9999999999999999999988875 99999999999 888865
Q ss_pred -------------------hCCCCCCCEEEe------------ecCCCCCCeEEEEcCCccCCCCchhHHHHHHHHHHHH
Q 008583 132 -------------------LGGCRTGMAKVT------------NAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSC 180 (560)
Q Consensus 132 -------------------~~~~~~G~~~vT------------~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~ 180 (560)
+|+|++|++++| +||+|+|+||||+|||.|..+.. .+.|.+||+++
T Consensus 549 ~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~---~~~l~~~~~~~ 625 (725)
T PRK13341 549 DGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE---DELLYKALYSA 625 (725)
T ss_pred ccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc---cchhHHHHHHH
Confidence 589999999999 99999999999999999987654 36899999999
Q ss_pred HHHHHHcCCe----------eeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChhHHHHHHHHhhh
Q 008583 181 LELLIENGLK----------SIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPL 250 (560)
Q Consensus 181 L~~a~e~~~~----------SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~~ 250 (560)
|++|++++++ |||||+|+||++|||.+.++++++++|++|+..+++ ..+++|+.+++.++..|++.+..
T Consensus 626 L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 704 (725)
T PRK13341 626 LLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPD-YRQALATNLEEERICNLDEELTR 704 (725)
T ss_pred HHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCc-HHHHHhccCCHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999988764 66788999999999999999887
Q ss_pred cCC
Q 008583 251 YFP 253 (560)
Q Consensus 251 yfp 253 (560)
+|-
T Consensus 705 ~~~ 707 (725)
T PRK13341 705 ILG 707 (725)
T ss_pred Hhh
Confidence 774
No 16
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.92 E-value=1.6e-25 Score=207.39 Aligned_cols=143 Identities=38% Similarity=0.668 Sum_probs=113.1
Q ss_pred CceEEcccCCCCCeEEEEEcccccCCCCCHHHHHHHHHHHh-hhhcCCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHhhH
Q 008583 396 KIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEF-EPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRK 474 (560)
Q Consensus 396 g~~y~~G~D~~GrpViv~~~~~~d~~~~d~e~ll~~~i~~l-e~~~~~~yviV~D~tg~s~~~~~~l~~lkk~~~~l~~~ 474 (560)
.++|.+|+|++||||+++.++++ +...|++.+++|++.++ +.+..++|++|+|+++++..+.++++|+++++++++..
T Consensus 2 ~~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~~ 80 (149)
T PF13716_consen 2 IFFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLSEEVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPRK 80 (149)
T ss_dssp SE-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH-TTTTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-HH
T ss_pred eEEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCccccCCchHHHHHHHHHHHHH
Confidence 46789999999999999999999 76779999999999999 78788999999999999999999999999999999999
Q ss_pred hhccccEEEEEcCChhHHHHH-HHhhhcccccc-cceEEEECCHhHHhccCCCCCC--CCChhHHHHHHh
Q 008583 475 HQRNLHAIYVLHPTFHLKATI-FTLQLLVDNVV-WKKVVYVDRLLQLFRYVPREQL--TIPDFVFQHDLE 540 (560)
Q Consensus 475 ~p~rLk~iyivnp~~~~k~~~-~~~~~fls~K~-~~KI~~~~sleeL~~~I~~eqL--~iP~~v~~~d~~ 540 (560)
+++||+++|||||++++|.++ .+.+++.+.|+ ++||++++++++|.++||++|| .|| .|++||+|
T Consensus 81 ~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~i~~~qL~~~lp-~~~~~d~~ 149 (149)
T PF13716_consen 81 YKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKHIDPSQLPESLP-GVLQYDHE 149 (149)
T ss_dssp HHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGTSGGGG-------HHH-----
T ss_pred HhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhhCCHHHhcccCC-CEEecCcC
Confidence 999999999999999999999 66688889999 9999999999999999999999 999 99999975
No 17
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.91 E-value=1.8e-24 Score=191.82 Aligned_cols=113 Identities=35% Similarity=0.532 Sum_probs=106.7
Q ss_pred EEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeecCCCCCCeEEEEcCCccCCCCchhHHHHHHH
Q 008583 101 VNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSH 175 (560)
Q Consensus 101 VN~aN~~l~~~~~-~~aI~~~aG~~L~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~ 175 (560)
||++|..+.+++| +++|++++|++++++|+++ +++++|++++|++++|++++|||+|+|.|.........+.|++
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~ 80 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALES 80 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeecCCCccccceEEEecceeccccccccHHHHHH
Confidence 8999999999876 5899999999999999876 6799999999999999999999999999987766777899999
Q ss_pred HHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHH
Q 008583 176 CYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 213 (560)
Q Consensus 176 ~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~ 213 (560)
||++||+.|.+++++||+||+||||++|+|++++|++|
T Consensus 81 ~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 81 AYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999986
No 18
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.88 E-value=2e-22 Score=206.28 Aligned_cols=172 Identities=27% Similarity=0.461 Sum_probs=157.2
Q ss_pred hHHHHhc--CceEE-cc-cCCCCCeEEEEEcccccCC-CCCHHHHHHHHHHHhhhhcCCCEEEEEEcCCCCCCCCCCHHH
Q 008583 389 LSEIAEM--KIVYR-GG-VDSEGRPVMVVVGAHFLLR-CLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGW 463 (560)
Q Consensus 389 l~~i~~~--g~~y~-~G-~D~~GrpViv~~~~~~d~~-~~d~e~ll~~~i~~le~~~~~~yviV~D~tg~s~~~~~~l~~ 463 (560)
+.+++++ +++-. ++ +|++||+|+++.+.++++. ++|-.+++.|+.+++|.++.++|++||+|.|..+.+.+.++|
T Consensus 71 fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~DYt~vYfh~gl~s~nkp~l~~ 150 (467)
T KOG4406|consen 71 FYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVENDYTLVYFHHGLPSDNKPYLQL 150 (467)
T ss_pred HHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhccceeeehhcCCcccccchHHH
Confidence 4555554 55543 33 6999999999999999874 677777999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhhccccEEEEEcCChhHHHHHHHhhhcccccccceEEEECCHhHHhccCCCCCCCCChhHHHHHHhhcC
Q 008583 464 MRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 543 (560)
Q Consensus 464 lkk~~~~l~~~~p~rLk~iyivnp~~~~k~~~~~~~~fls~K~~~KI~~~~sleeL~~~I~~eqL~iP~~v~~~d~~l~~ 543 (560)
+.+.|.-+++++.+|+|++|+|||+|+.+++|++++||++.|+.+||+|+++++||.++|.-++|.||..|++||..++.
T Consensus 151 l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~lseL~~~l~l~rL~lP~~v~~~D~~~~s 230 (467)
T KOG4406|consen 151 LFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNSLSELFEALKLNRLKLPPEVLKHDDKLLS 230 (467)
T ss_pred HHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeehHHHHHHhhhhhhhcCChhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCC
Q 008583 544 GKGLIVDPRTKYVYQRP 560 (560)
Q Consensus 544 ~~~~~~~~~~~~~~~~~ 560 (560)
.+-.++.|+++..+.|+
T Consensus 231 ~~~~~a~~p~~~~~pr~ 247 (467)
T KOG4406|consen 231 KAKTPAPPPEKMTPPRP 247 (467)
T ss_pred cccCCCCCcccCCCCCC
Confidence 98888888887777764
No 19
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.84 E-value=1.5e-20 Score=174.78 Aligned_cols=127 Identities=24% Similarity=0.518 Sum_probs=119.1
Q ss_pred ccCCCCCeEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCC--------CEEEEEEcCCCCCCCCCCHHHHHHHHHHHhh
Q 008583 402 GVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQK--------PYSIVYFHSAASLQLQPDLGWMRRLQQVLGR 473 (560)
Q Consensus 402 G~D~~GrpViv~~~~~~d~~~~d~e~ll~~~i~~le~~~~~--------~yviV~D~tg~s~~~~~~l~~lkk~~~~l~~ 473 (560)
|.|++||||+++++++++++..+.++++++++.++|..... .+++|+|++++++.+ ++++++|+++..++.
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~-~~~~~lk~~~~~~~~ 92 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN-PDLSVLRKILKILQD 92 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc-ccHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999977643 599999999999865 899999999999999
Q ss_pred HhhccccEEEEEcCChhHHHHHHHhhhcccccccceEEEECC--HhHHhccCCCCCCC
Q 008583 474 KHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPREQLT 529 (560)
Q Consensus 474 ~~p~rLk~iyivnp~~~~k~~~~~~~~fls~K~~~KI~~~~s--leeL~~~I~~eqL~ 529 (560)
.||+||+.+||||||++++++|+++++|+++++++||+++++ .++|.++||+++|+
T Consensus 93 ~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 93 HYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred HhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999999999999999999999999999999999999999987 89999999998643
No 20
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.81 E-value=1.9e-19 Score=165.37 Aligned_cols=135 Identities=27% Similarity=0.520 Sum_probs=121.0
Q ss_pred CceEEcccCCCCCeEEEEEcccccC-CCCCHHHHHHHHHHHhhhhcC------CCEEEEEEcCCCCCCCC-CCHHHHHHH
Q 008583 396 KIVYRGGVDSEGRPVMVVVGAHFLL-RCLDLERFVLYVVKEFEPLIQ------KPYSIVYFHSAASLQLQ-PDLGWMRRL 467 (560)
Q Consensus 396 g~~y~~G~D~~GrpViv~~~~~~d~-~~~d~e~ll~~~i~~le~~~~------~~yviV~D~tg~s~~~~-~~l~~lkk~ 467 (560)
++.|.+|.|++||||++++.++.+. ...+.+++++++++.+|..+. ..+++|+|++|+++.+. ++.+++|++
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~ 88 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI 88 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence 5666777899999999999996554 355669999999999987765 36999999999998754 488999999
Q ss_pred HHHHhhHhhccccEEEEEcCChhHHHHHHHhhhcccccccceEEEECC-HhHHhccCCCCCCCC
Q 008583 468 QQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR-LLQLFRYVPREQLTI 530 (560)
Q Consensus 468 ~~~l~~~~p~rLk~iyivnp~~~~k~~~~~~~~fls~K~~~KI~~~~s-leeL~~~I~~eqL~i 530 (560)
+.+++..||+||+.+||||||++++.+|+++++|+++++++||+++++ .++|.++||+++|+.
T Consensus 89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp~ 152 (157)
T cd00170 89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPE 152 (157)
T ss_pred HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCcH
Confidence 999999999999999999999999999999999999999999999998 999999999998764
No 21
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.81 E-value=2.5e-19 Score=164.45 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=110.9
Q ss_pred EEEEEEcCCccc-cccEEEEcCCcCCCCCCc-hHHHHHh---hChhHHHHHHHhCCCCCCCE-EEeecCCCCCCeEEEEc
Q 008583 84 KIYLWRGNPWNL-EVDTVVNSTNENLDEAHS-SPGLHAA---AGPGLAEECATLGGCRTGMA-KVTNAYDLPARRVIHTV 157 (560)
Q Consensus 84 ~I~i~~GDI~~~-~vDaIVN~aN~~l~~~~~-~~aI~~~---aG~~L~~e~~~~~~~~~G~~-~vT~~~~L~~k~IIH~V 157 (560)
.|.+++|||++. ++|+|||++|..+.+|+| +.+|.++ +..++++.|++.+ +..|++ +++.++++++++|+|++
T Consensus 1 ~i~~v~GDi~~~~~~d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~I~~~~ 79 (140)
T cd02901 1 MITYVKGDLLHAPEAAALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKKE-LLLGGVAVLERGSSLVSRYIYNLP 79 (140)
T ss_pred CeEEEcCccccCCCCCEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhcC-CCCCcEEEEecCCCCCceEEEEee
Confidence 378999999999 999999999999998876 5788886 3335666676654 445555 55667888999999999
Q ss_pred CCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHH
Q 008583 158 GPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 219 (560)
Q Consensus 158 gP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~ 219 (560)
+|.+.... ...+.|++|++++++.|.+++++|||||.||||.+|+|.+++++++.+.+.+
T Consensus 80 t~~~~~~~--~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 80 TKVHYGPK--SRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred ccCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 99876533 3457999999999999999999999999999999999999999998887653
No 22
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.76 E-value=1e-18 Score=162.52 Aligned_cols=139 Identities=20% Similarity=0.328 Sum_probs=113.4
Q ss_pred HHHhcCceEEcccCCCCCeEEEEEcccccCCCCCHHHHHHHHHHHhhhhcC--------CCEEEEEEcCCCCCCCCC--C
Q 008583 391 EIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQ--------KPYSIVYFHSAASLQLQP--D 460 (560)
Q Consensus 391 ~i~~~g~~y~~G~D~~GrpViv~~~~~~d~~~~d~e~ll~~~i~~le~~~~--------~~yviV~D~tg~s~~~~~--~ 460 (560)
++.+.+++|..|+|++||||++++.+++++..+..++++++++..+|..+. ..+++|+|++|+++.+.. .
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~ 81 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWP 81 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHH
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccch
Confidence 567889999999999999999999999999988999999999999987651 349999999999976322 2
Q ss_pred HHHHHHHHHHHhhHhhccccEEEEEcCChhHHHHHHHhhhcccccccceEEEECCH---hHHhccCCCCCCC
Q 008583 461 LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRL---LQLFRYVPREQLT 529 (560)
Q Consensus 461 l~~lkk~~~~l~~~~p~rLk~iyivnp~~~~k~~~~~~~~fls~K~~~KI~~~~sl---eeL~~~I~~eqL~ 529 (560)
.+.+|++.++++..||++++.+||+|+|++++.+|+++++|+++++++||+++.+. ++|.++||+++||
T Consensus 82 ~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP 153 (159)
T PF00650_consen 82 ISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLP 153 (159)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSB
T ss_pred hhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCc
Confidence 89999999999999999999999999999999999999999999999999999543 5799999998764
No 23
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=99.76 E-value=7.6e-18 Score=171.08 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=128.5
Q ss_pred hHHHHhcCceEEcccCCCCCeEEEEEcccccCCCCCHHHHHHHHHHHhhhhc------CCCEEEEEEcCCCCCCCCCCHH
Q 008583 389 LSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLI------QKPYSIVYFHSAASLQLQPDLG 462 (560)
Q Consensus 389 l~~i~~~g~~y~~G~D~~GrpViv~~~~~~d~~~~d~e~ll~~~i~~le~~~------~~~yviV~D~tg~s~~~~~~l~ 462 (560)
+..-.+.|..|..|.|++||||+|++++...++..+.+.+.+++..+||..+ .+.+++++|++|+++.| +++.
T Consensus 91 v~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN-~d~~ 169 (324)
T KOG1470|consen 91 VAAELETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSN-PDIK 169 (324)
T ss_pred HHHHhhcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccC-CCcH
Confidence 3344568999999999999999999999998999999999999999998664 35699999999999985 6899
Q ss_pred HHHHHHHHHhhHhhccccEEEEEcCChhHHHHHHHhhhcccccccceEEEECCHhHHhccCCCCCC
Q 008583 463 WMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPREQL 528 (560)
Q Consensus 463 ~lkk~~~~l~~~~p~rLk~iyivnp~~~~k~~~~~~~~fls~K~~~KI~~~~sleeL~~~I~~eqL 528 (560)
++|-++.+++++||+||..++|+|+||+|..+|++++||++++++.||+|+.+..+|.++|++++|
T Consensus 170 ~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~~~l~~~~d~~~l 235 (324)
T KOG1470|consen 170 FLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPKDDLSEYFDESQL 235 (324)
T ss_pred HHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecChhHHHhhCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999984
No 24
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.46 E-value=2.3e-13 Score=141.65 Aligned_cols=132 Identities=22% Similarity=0.302 Sum_probs=109.0
Q ss_pred eEEcccCCCCCeEEEEEcccccCCC----CCHHHHHHHHHHHhhh--------hc------CCCEEEEEEcCCCCCC--C
Q 008583 398 VYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFEP--------LI------QKPYSIVYFHSAASLQ--L 457 (560)
Q Consensus 398 ~y~~G~D~~GrpViv~~~~~~d~~~----~d~e~ll~~~i~~le~--------~~------~~~yviV~D~tg~s~~--~ 457 (560)
....|+|++|+||++-..+..+.+. ....+.+++.+.-++. .. ...++.|+|+.|+++. .
T Consensus 97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~ 176 (317)
T KOG1471|consen 97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL 176 (317)
T ss_pred ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence 3455899999999999999997653 3444444444433322 11 2349999999999988 3
Q ss_pred CCCHHHHHHHHHHHhhHhhccccEEEEEcCChhHHHHHHHhhhcccccccceEE-EE-CCHhHHhccCCCCCCC
Q 008583 458 QPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVV-YV-DRLLQLFRYVPREQLT 529 (560)
Q Consensus 458 ~~~l~~lkk~~~~l~~~~p~rLk~iyivnp~~~~k~~~~~~~~fls~K~~~KI~-~~-~sleeL~~~I~~eqL~ 529 (560)
.+.++.++++..+++++||++++++||||+|++|.++|++++|||++++++||+ ++ ++.++|+++||++.||
T Consensus 177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP 250 (317)
T KOG1471|consen 177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLP 250 (317)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCc
Confidence 578999999999999999999999999999999999999999999999999999 43 6899999999998764
No 25
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.44 E-value=2.1e-12 Score=120.58 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=106.9
Q ss_pred EEEEEEcCCccc---cccEEEEcCCcCCCCCCch-HHHHHhhChhHHHHHHHh---CCCCCCCEEE-eecCCCCCCeEEE
Q 008583 84 KIYLWRGNPWNL---EVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL---GGCRTGMAKV-TNAYDLPARRVIH 155 (560)
Q Consensus 84 ~I~i~~GDI~~~---~vDaIVN~aN~~l~~~~~~-~aI~~~aG~~L~~e~~~~---~~~~~G~~~v-T~~~~L~~k~IIH 155 (560)
.|.+++|||++. ..++|||++|....+|+|. .+|.++. |++.++.++. +..+.|++.+ |.+++.+.++|+|
T Consensus 2 ~i~~v~GDl~~~~~~~~~~i~h~~N~~g~mG~GIA~~~k~~~-P~~~~~y~~~~~~~~~~lG~~~~~~~~~~~~~~~I~n 80 (154)
T PHA02595 2 IVDYIKGDIVALFLQGKGNIAHGCNCFHTMGSGIAGQLAKAF-PQILEADKLTTEGDVEKLGTFSVWEKYVGGHKAYCFN 80 (154)
T ss_pred eEEEECCcccccccCCCceEEEeeCCCCcCChHHHHHHHHHc-ChHHHHHHHHhcCCccccceEEEEEeeccCCCEEEEE
Confidence 478899999877 5669999999999998875 6776666 6787777654 4677899966 6677788899999
Q ss_pred EcCCccCCCCchhHHHHHHHHHHHHHHHHHHcCC-eeeeecccccCCCCCChHHHHHHHHHH
Q 008583 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGL-KSIAMGCIYTEAKNYPREPAAHVAIRT 216 (560)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~-~SIafP~i~tG~~g~p~~~~A~i~l~~ 216 (560)
..+- |+.+.. ...+.|++|+++..+.+.++++ .|||||.||||.+|.|.+.+..++.+.
T Consensus 81 l~tq-~~~~~~-~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~ 140 (154)
T PHA02595 81 LYTQ-FDPGPN-LEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA 140 (154)
T ss_pred Eecc-CCCCCC-CcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh
Confidence 9875 766543 2356799999999999999998 999999999999999999998888764
No 26
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.42 E-value=1.4e-06 Score=87.38 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=84.8
Q ss_pred CEEEEEEcCCccc-------------cccEEEEcCCcCCCCCCch-HHHHHhhChh-HHHHHHH-h--CCCCCCCEEEee
Q 008583 83 SKIYLWRGNPWNL-------------EVDTVVNSTNENLDEAHSS-PGLHAAAGPG-LAEECAT-L--GGCRTGMAKVTN 144 (560)
Q Consensus 83 ~~I~i~~GDI~~~-------------~vDaIVN~aN~~l~~~~~~-~aI~~~aG~~-L~~e~~~-~--~~~~~G~~~vT~ 144 (560)
..+.++.|++..+ ..||||.|+|+.--+|||- .+|.++-|.+ +..-+++ + +..++|.+-+..
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l~~~y~pvGs~tvId 121 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQLGERYHPVGSCTVID 121 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHTTTS---TT--EEEE
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHHhccccCCCeeEEEE
Confidence 3488888887754 3789999999988888875 6888876654 4443443 2 235778877766
Q ss_pred c----------CCCCCCeEEEEcC---Cc---cCCCCc-hhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChH
Q 008583 145 A----------YDLPARRVIHTVG---PK---YAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 207 (560)
Q Consensus 145 ~----------~~L~~k~IIH~Vg---P~---~~~~~~-~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~ 207 (560)
- .+-.++||||+-. |. |..... ...-+.+-++++|+|..+. ..+.+|.+|.||||.+|.|++
T Consensus 122 L~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~ 200 (280)
T PF14519_consen 122 LPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPE 200 (280)
T ss_dssp GGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HH
T ss_pred CchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHH
Confidence 4 2345789999854 22 222110 1123567788999887664 569999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008583 208 PAAHVAIRTVRRFLEK 223 (560)
Q Consensus 208 ~~A~i~l~~v~~fl~~ 223 (560)
.+|+.|+-+++-|...
T Consensus 201 ~sAk~M~fAl~l~~l~ 216 (280)
T PF14519_consen 201 ISAKQMAFALRLYNLQ 216 (280)
T ss_dssp HHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999999854
No 27
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=98.09 E-value=0.0001 Score=68.64 Aligned_cols=129 Identities=10% Similarity=0.020 Sum_probs=94.1
Q ss_pred EEEEEcCCcccccc-----EEEEcCCcCCCCC-Cc-hHHHHHhhChhHHHH---HHHhCCCCCCCEEEeecCC----CC-
Q 008583 85 IYLWRGNPWNLEVD-----TVVNSTNENLDEA-HS-SPGLHAAAGPGLAEE---CATLGGCRTGMAKVTNAYD----LP- 149 (560)
Q Consensus 85 I~i~~GDI~~~~vD-----aIVN~aN~~l~~~-~~-~~aI~~~aG~~L~~e---~~~~~~~~~G~~~vT~~~~----L~- 149 (560)
|+.++||++....+ .||+..|..-..| || +.+|.++. |+..+. |.+.+.+..|++.+..... ..
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~~~dl~LG~~~li~v~~~~~~~~~ 80 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGKMKDLHLGDLHLFPIDDKNSRLKG 80 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHhcCCCccccEEEEEeccccCCCCC
Confidence 78899999998655 9999999998877 45 57776654 544443 4445667789999886522 11
Q ss_pred CCeEEEEcCCccCCC--CchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHH
Q 008583 150 ARRVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIR 215 (560)
Q Consensus 150 ~k~IIH~VgP~~~~~--~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~ 215 (560)
-.+|...++..+..+ ...-....|++|+..+-..|.+ +-.||.||-||+|.+|.+.+..-+++-+
T Consensus 81 ~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k 147 (152)
T cd03331 81 PDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRK 147 (152)
T ss_pred CeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 357888888876554 2234467888888888877765 4588999999999999999876555433
No 28
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=97.81 E-value=7.3e-06 Score=97.07 Aligned_cols=183 Identities=11% Similarity=0.046 Sum_probs=154.3
Q ss_pred cCCCCCCCCChhHHhH--------------HHHHHHHHh---cCCChHHHHhcCceEEcccCCCCCeEEEEEcccccCCC
Q 008583 360 FGDLGGPPLSAAEEYS--------------LHSRYLAKA---NSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRC 422 (560)
Q Consensus 360 l~~lg~p~~~~~~e~~--------------~~~~~lr~a---~~~dl~~i~~~g~~y~~G~D~~GrpViv~~~~~~d~~~ 422 (560)
++..|.|++....... ..++.+++. .++.+..+++.-.+|+.| .+.|.|+++++.+++-.+.
T Consensus 1509 ~a~rglpEH~~iad~s~v~s~~~~i~L~S~d~E~ii~~~~lheKe~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~~ 1587 (2724)
T KOG1826|consen 1509 LAYRGLPEHAPIADGSFVFSRFKEIALVSPDSENIIREHHLHEKEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLKE 1587 (2724)
T ss_pred HHhhCCCCCCccCCCCcceehcccccccCccHHHHHHHHHHhhhhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHhh
Confidence 4677888765443211 235566643 466688888888999999 9999999999999998888
Q ss_pred CCHHHHHHHHHHHhhhhcCCCEEEEEEcCCCCCCCCCCHHHHHH-HHHHHhhHhhccccEEEEEcCChhHHHHHHHhhhc
Q 008583 423 LDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRR-LQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLL 501 (560)
Q Consensus 423 ~d~e~ll~~~i~~le~~~~~~yviV~D~tg~s~~~~~~l~~lkk-~~~~l~~~~p~rLk~iyivnp~~~~k~~~~~~~~f 501 (560)
.+-+.++++...++.+..+-++.++.|.|....++++-.+++++ ++...+....+|..+++.+|++.|.|....+....
T Consensus 1588 ~s~~il~~l~~L~~kp~~hf~~evreD~T~~~~d~sfltsf~~~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~l~dri 1667 (2724)
T KOG1826|consen 1588 CSDDILIFLVELCLKPKVHFPGEVREDPTPIEFDYSFLTSFLYLKWFKVRPHVANENKHAVGDINCNSFLKETTKLHDRI 1667 (2724)
T ss_pred cCcHHHHHHHHHHcCccccCcceeeecCCcCCccHHHHHHHHhhhheeechhhhhhcccccccccchHHHHHHHHHHHHH
Confidence 88889999999999999999999999999998877776777765 88889999999999999999999999999998777
Q ss_pred ccc-cccceEEEECCHhHHhccCCCCCCCCChhHHHHHHhhcC
Q 008583 502 VDN-VVWKKVVYVDRLLQLFRYVPREQLTIPDFVFQHDLEVNG 543 (560)
Q Consensus 502 ls~-K~~~KI~~~~sleeL~~~I~~eqL~iP~~v~~~d~~l~~ 543 (560)
+.. |--++..|.+..-.|.++|+.++..+|-.+.-.++++.-
T Consensus 1668 L~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~~edlkv 1710 (2724)
T KOG1826|consen 1668 LGQLGQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHAFEDLKV 1710 (2724)
T ss_pred HhhcCCCceeehhcCCHHHHHHHhhhhhhhhHHHHHHHhhccc
Confidence 776 777888899999999999999999999999888877653
No 29
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=97.08 E-value=0.0029 Score=64.15 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=99.2
Q ss_pred CCEEEEEEcCCccc----------cccEEEEcCCcCCCCCC---ch----HHHHHhhC--hhHH--HHHH---Hh--CCC
Q 008583 82 NSKIYLWRGNPWNL----------EVDTVVNSTNENLDEAH---SS----PGLHAAAG--PGLA--EECA---TL--GGC 135 (560)
Q Consensus 82 n~~I~i~~GDI~~~----------~vDaIVN~aN~~l~~~~---~~----~aI~~~aG--~~L~--~e~~---~~--~~~ 135 (560)
..+|.|+.+|.... .-=+|.|.||..--.|| |+ .+|.+..+ +.|. .+.- .. .++
T Consensus 55 ~t~i~V~~~dtl~aA~~L~~~~~~~~v~vLNfASa~~PGGG~l~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~r~~~~pl 134 (266)
T TIGR02452 55 RTELKVVNESTLHAAVRLKESYFAGKVALLNFASAKNPGGGFLNGAQAQEESLCRASALYPCLIKFNEYYEFHRHQRSPL 134 (266)
T ss_pred CceEEEEcCCHHHHHHHHHhhccCCCeEEEeccCcCCCCCCcccCccchHHHHHHhccHHHHHhcchhHhhhhcccCCCC
Confidence 46799999995322 12389999988665444 22 24555443 2221 1111 00 122
Q ss_pred C------CCCEEEee--cCC-CCCC---eEEEEcCCccCC------CCchhHHHHHHHHHHHHHHHHHHcCCeeeeeccc
Q 008583 136 R------TGMAKVTN--AYD-LPAR---RVIHTVGPKYAV------KYHTAAENALSHCYRSCLELLIENGLKSIAMGCI 197 (560)
Q Consensus 136 ~------~G~~~vT~--~~~-L~~k---~IIH~VgP~~~~------~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i 197 (560)
. +.+|.+-+ .|+ |.-. -||=+..|.+.. ....+..+.|.+-++.+|..|..+|.+++.+.+.
T Consensus 135 ~~~~~IYSP~V~vFR~d~g~~l~~p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~ 214 (266)
T TIGR02452 135 YSDRAIYSPNVPVFRNDDGDLLNEPFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAW 214 (266)
T ss_pred CCCceEECCCcEEEECCCCCcccCCceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 2 23333322 123 2221 256666676641 1123446789999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecChh
Q 008583 198 YTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTAS 239 (560)
Q Consensus 198 ~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~i~~V~fv~~~~~ 239 (560)
|||.|+-|+.++|+...+.+.. -......++.|+|.+++..
T Consensus 215 GCG~f~N~p~~VA~~f~evL~~-~~ef~g~F~~VvFAI~d~~ 255 (266)
T TIGR02452 215 GCGVFGNDPAEVAKIFHDLLSP-GGIFKGRIKEVVFAILDRH 255 (266)
T ss_pred cccccCCCHHHHHHHHHHHhcc-CccccCceeEEEEEEeCCC
Confidence 9999999999999998888761 0112357999999999743
No 30
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=96.11 E-value=0.039 Score=60.60 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=85.6
Q ss_pred CCCCCEEEeecCCCC-CCeEEEEcCCc-cCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCCh-----H
Q 008583 135 CRTGMAKVTNAYDLP-ARRVIHTVGPK-YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPR-----E 207 (560)
Q Consensus 135 ~~~G~~~vT~~~~L~-~k~IIH~VgP~-~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~-----~ 207 (560)
+.+|+++||+=-||. +..|+|-|.-. ...+. -.+..-+-..+||+|+.|..+++.+|.+|.+-+....-.. -
T Consensus 372 l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~-~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~ 450 (510)
T PF10154_consen 372 LKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSN-INSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCL 450 (510)
T ss_pred CCCCceEEecccCcccceEEEEEEecCccccCC-CCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHH
Confidence 589999999999999 46688988432 11111 1233456789999999999999999999999887543222 2
Q ss_pred HHHHHHHHHHHHHHHHcC----CCccEEEEEecCh---hHHHHHHHHhhhcCC
Q 008583 208 PAAHVAIRTVRRFLEKQK----DKISAVVFCTTTA---SDTEIYKRLLPLYFP 253 (560)
Q Consensus 208 ~~A~i~l~~v~~fl~~~~----~~i~~V~fv~~~~---~~~~~y~~~l~~yfp 253 (560)
.=|+..++.|+-|+-... .....|.|++-.. +.+..+...++..|.
T Consensus 451 ~Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr 503 (510)
T PF10154_consen 451 KRAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFR 503 (510)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhc
Confidence 347888999999998754 2447899988654 445556677777775
No 31
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=0.096 Score=50.72 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCh--hHHHHHH
Q 008583 168 AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTA--SDTEIYK 245 (560)
Q Consensus 168 ~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~~v~~fl~~~~~~i~~V~fv~~~~--~~~~~y~ 245 (560)
+..+.|..-++.+|.+|..++.+.+++-+-|||+|+-.+..+|+++.+.+..=.++.. .++.|+|.++|. ....+|+
T Consensus 197 ~i~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g-~fkhv~FavlD~n~~~~~iFr 275 (285)
T COG4295 197 EIREALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLG-DFKHVVFAVLDRNMTIVNIFR 275 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhc-ccceEEEEEecCCchHHHHHH
Confidence 3467899999999999999999999999999999999999999999988876655543 688899999974 4567888
Q ss_pred HHhhhc
Q 008583 246 RLLPLY 251 (560)
Q Consensus 246 ~~l~~y 251 (560)
+.+..+
T Consensus 276 ~ele~f 281 (285)
T COG4295 276 KELEYF 281 (285)
T ss_pred HHHHhh
Confidence 877543
No 32
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=46.64 E-value=46 Score=42.24 Aligned_cols=125 Identities=11% Similarity=0.132 Sum_probs=77.9
Q ss_pred cCCCCCCCCC-----------hhHHhHHHHHHHHHhcCCChHHHHhcCceEEcccCCCCCeEEEEEcccccCCCCCHHHH
Q 008583 360 FGDLGGPPLS-----------AAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERF 428 (560)
Q Consensus 360 l~~lg~p~~~-----------~~~e~~~~~~~lr~a~~~dl~~i~~~g~~y~~G~D~~GrpViv~~~~~~d~~~~d~e~l 428 (560)
|++||+|... ..+.+...-++|.++..+|++.-.+......-.....|-+++.+..-+..-..+.++-+
T Consensus 1668 L~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~~edlkvsnalk~s~~etkvsi~ig~~alt~Tnae~tkvl~~Sv 1747 (2724)
T KOG1826|consen 1668 LGQLGQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHAFEDLKVSNALKPSVHETKVSIGIGIIALTMTNAEDTKVLIDSV 1747 (2724)
T ss_pred HhhcCCCceeehhcCCHHHHHHHhhhhhhhhHHHHHHHhhccccccccchhhhhhhhcccCceEEEEeccccccchhhhH
Confidence 6999999331 11223333457788888887763333444433445678778888777776667777766
Q ss_pred HHHHHHHhhhhcCCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHhhHhhccccEEEEEcC
Q 008583 429 VLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHP 487 (560)
Q Consensus 429 l~~~i~~le~~~~~~yviV~D~tg~s~~~~~~l~~lkk~~~~l~~~~p~rLk~iyivnp 487 (560)
++-.++..- .-+-++++|++.|+..-..--.++.-++..+|+-.+.++...|-.|-
T Consensus 1748 ~~kdl~~~a---eik~~cliD~tqFtl~ian~~~~ls~~h~~c~~i~qs~~h~~~~~~v 1803 (2724)
T KOG1826|consen 1748 AYKDLQIYA---EIKHCCLIDCTQFTLGIANMRKFLSLVHGLCPEIAQSNCHGCYYFNV 1803 (2724)
T ss_pred HHHHHHHHh---hcceEEEEEcCeeeeccccccchhHHHHhhhHHHhhhheeeeeeEec
Confidence 655554432 34567888999998762222233444677778777888877776554
No 33
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=34.98 E-value=79 Score=32.27 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=27.9
Q ss_pred CCeEEEEcCCccCCC--CchhHHHHHHHHHHHHHHHHHHcCCeeeeec
Q 008583 150 ARRVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (560)
Q Consensus 150 ~k~IIH~VgP~~~~~--~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP 195 (560)
|+.|||++.|.-..+ ......+.=-...+++|+.|.+.+++.+.+.
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 789999998753322 2222222333667777777777777666553
No 34
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=34.16 E-value=84 Score=28.31 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhh-Hhhcccc-EEEEEcCChhHHHHHHHh-----hhcccccccceEEEECCHhHHhccC
Q 008583 461 LGWMRRLQQVLGR-KHQRNLH-AIYVLHPTFHLKATIFTL-----QLLVDNVVWKKVVYVDRLLQLFRYV 523 (560)
Q Consensus 461 l~~lkk~~~~l~~-~~p~rLk-~iyivnp~~~~k~~~~~~-----~~fls~K~~~KI~~~~sleeL~~~I 523 (560)
...|-.++..+.- .+...-| -+.++|.+-+.+-.+.++ ..|+++.....++++++.+++.++|
T Consensus 64 ~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 64 IGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 3445556666553 3333445 799999875556666655 5688888888999999999997764
No 35
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=32.37 E-value=2.3e+02 Score=23.80 Aligned_cols=89 Identities=13% Similarity=0.007 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHhhhhc--CCCEEEEEEcC-CCCCCCCCCHHHHHHHHHHHhhHhhccccEEEEEcCChhHHHHHHHh
Q 008583 422 CLDLERFVLYVVKEFEPLI--QKPYSIVYFHS-AASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTL 498 (560)
Q Consensus 422 ~~d~e~ll~~~i~~le~~~--~~~yviV~D~t-g~s~~~~~~l~~lkk~~~~l~~~~p~rLk~iyivnp~~~~k~~~~~~ 498 (560)
.++.+++-. +...++... .+++.+++|++ ++.. +++.-+.....+. ..+..+++++=+|-.+.|.+.+.+++
T Consensus 10 ~~t~ed~~~-~~~~~~~~~~~~~~~~ll~d~~~~~~~---~~~~a~~~~~~~~-~~~~~~~~r~AvV~~~~~~~~~~~~~ 84 (109)
T PF11964_consen 10 KLTEEDYKE-LLPALEELIADHGKIRLLVDLRRDFEG---WSPEARWEDAKFG-LKHLKHFRRIAVVGDSEWIRMIANFF 84 (109)
T ss_dssp EE-HHHHHH-HHHHHHHHHTTSSSEEEEEEEC-CEEE---EHHHHHHHHHHHH-CCCCGGEEEEEEE-SSCCCHHHHHHH
T ss_pred eeCHHHHHH-HHHHHHHHHhcCCceEEEEEecCccCC---CCHHHHHHHHHhc-hhhhcccCEEEEEECcHHHHHHHHHH
Confidence 356666555 444454444 45699999988 7632 2333333333332 34778889999999999999999999
Q ss_pred hhcccccccceEEEE--CCHhHH
Q 008583 499 QLLVDNVVWKKVVYV--DRLLQL 519 (560)
Q Consensus 499 ~~fls~K~~~KI~~~--~sleeL 519 (560)
..| ...-+.+. ++.++-
T Consensus 85 ~~~----~~~~~~~F~~~~~~~A 103 (109)
T PF11964_consen 85 AAF----PPIEVRYFPPDEEEEA 103 (109)
T ss_dssp HHH-----SSEEEEE--SSHHHH
T ss_pred Hhc----CCCceEEECCCCHHHH
Confidence 886 33445565 665543
No 36
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=31.89 E-value=1.4e+02 Score=25.35 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhHHHHHHHHhhhcCC
Q 008583 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (560)
Q Consensus 205 p~~~~A~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (560)
..++=++.+++.|+.-|+..+. ++-++.+.+.+.+++..+.+....||+
T Consensus 23 d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 23 TVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 3556677788899999988774 444555556678889999999999998
No 37
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=31.43 E-value=86 Score=33.02 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=24.8
Q ss_pred CCeEEEEcCCccCCCCc--hhHHHHHHHHHHHHHHHHHHcC-Ceeeee
Q 008583 150 ARRVIHTVGPKYAVKYH--TAAENALSHCYRSCLELLIENG-LKSIAM 194 (560)
Q Consensus 150 ~k~IIH~VgP~~~~~~~--~~~~~~L~~~~~~~L~~a~e~~-~~SIaf 194 (560)
|+.|+|++.|..-.... .+....=-+...|+|+.|.+.+ ++.|.+
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~ 126 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY 126 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence 99999999996544331 1111222244455565555544 555544
No 38
>PHA00684 hypothetical protein
Probab=28.41 E-value=1.4e+02 Score=26.87 Aligned_cols=46 Identities=2% Similarity=-0.128 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeeeecccccCCCCCChHHHHHHHHH
Q 008583 170 ENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIR 215 (560)
Q Consensus 170 ~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g~p~~~~A~i~l~ 215 (560)
.+.++..+..-+..|.++--.+.-+..||||+.||..++.|....+
T Consensus 55 l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~ 100 (128)
T PHA00684 55 LPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRD 100 (128)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhc
Confidence 4679999999999999998889999999999999999987776553
No 39
>PLN02778 3,5-epimerase/4-reductase
Probab=26.81 E-value=1.1e+02 Score=31.41 Aligned_cols=46 Identities=13% Similarity=0.009 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCccCC------CCchhHHHHHHHHHHHHHHHHHHcCCeeeee
Q 008583 149 PARRVIHTVGPKYAV------KYHTAAENALSHCYRSCLELLIENGLKSIAM 194 (560)
Q Consensus 149 ~~k~IIH~VgP~~~~------~~~~~~~~~L~~~~~~~L~~a~e~~~~SIaf 194 (560)
.+++|||++++.... .........--....++|+.|.+.|++-|.+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 479999999875321 1111122222345668889999999876554
No 40
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=25.31 E-value=3e+02 Score=23.96 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhHHHHHHHHhhhcCCCC
Q 008583 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPRD 255 (560)
Q Consensus 205 p~~~~A~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr~ 255 (560)
..++=++.+++.+++-|+.... .+-++.+.+.+..++..+.+....||+..
T Consensus 40 ~~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~~yl~d~~~~~~~~~v~~~~f~~~ 93 (121)
T PF01042_consen 40 DIEEQTRQALDNIERILAAAGASLDDVVKVTVYLTDMSDFPAVNEVWKEFFPDH 93 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTS-GGGEEEEEEEESSGGGHHHHHHHHHHHSTSS
T ss_pred CHHHHHHHHHHhhhhhhhcCCCcceeEeeeeehhhhhhhhHHHHHHHHHHhccc
Confidence 4445555566666666666552 45556666677888999999999999976
No 41
>PLN02214 cinnamoyl-CoA reductase
Probab=24.09 E-value=1.6e+02 Score=30.78 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=28.8
Q ss_pred CCeEEEEcCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCeeeeec
Q 008583 150 ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (560)
Q Consensus 150 ~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP 195 (560)
+++|||+++|.... .....+.--....++|+.|.+.+++.|.+.
T Consensus 82 ~d~Vih~A~~~~~~--~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 82 CDGVFHTASPVTDD--PEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred CCEEEEecCCCCCC--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 78999999986422 111112223456788888888888877764
No 42
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=23.46 E-value=1.4e+02 Score=29.95 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCcc----CCCCchhHHHHHHHHHHHHHHHHHHcCCeeeee
Q 008583 149 PARRVIHTVGPKY----AVKYHTAAENALSHCYRSCLELLIENGLKSIAM 194 (560)
Q Consensus 149 ~~k~IIH~VgP~~----~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIaf 194 (560)
.+++|||++++.- .........+.-.....++|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 4589999998631 112222222223346778889999888887777
No 43
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=22.23 E-value=1.2e+02 Score=31.72 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=32.5
Q ss_pred CCeEEEEcCCccCC---CCchhHHHHHHHHHHHHHHHHHHcCCeeeeecccccCCCC
Q 008583 150 ARRVIHTVGPKYAV---KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKN 203 (560)
Q Consensus 150 ~k~IIH~VgP~~~~---~~~~~~~~~L~~~~~~~L~~a~e~~~~SIafP~i~tG~~g 203 (560)
+++|||.++..... .......+.=-.+..++|+.|.+.+++.+.++. +++.+|
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S-S~~vyg 146 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA-SSSTYG 146 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee-chHhhC
Confidence 67999999753211 111112222335677899999999998888854 233444
No 44
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.92 E-value=2.6e+02 Score=23.80 Aligned_cols=50 Identities=8% Similarity=0.155 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhHHHHHHHHhhhcCCC
Q 008583 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (560)
Q Consensus 205 p~~~~A~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (560)
...+=++.+++.++.-|+..+. ++-++.+.+.+..++..+.+....||+.
T Consensus 26 ~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~~~f~~ 78 (105)
T cd06150 26 DITGQTRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAWVPP 78 (105)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHcCC
Confidence 3556667788888888888764 3445555556678888888888888873
No 45
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.05 E-value=2.2e+02 Score=23.68 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhHHHHHHHHhhhcCCC
Q 008583 206 REPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (560)
Q Consensus 206 ~~~~A~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (560)
..+-++.+++.+.+.|+.... .+-++.+.+.+.+++..+.+....||+.
T Consensus 30 ~~~Q~~~~~~ni~~~L~~~g~~~~~iv~~~~yv~~~~~~~~~~~~~~~~~~~ 81 (107)
T cd00448 30 IEAQTRQALENLEAVLEAAGGSLDDVVKVTVYLTDMADFAAVNEVYDEFFGE 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecHHHHHHHHHHHHHHhCC
Confidence 334444445555555554432 3445555556678888888888889984
No 46
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=20.98 E-value=1.1e+02 Score=31.52 Aligned_cols=69 Identities=13% Similarity=0.274 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHcCCCccEEEEEecCh--h--HHHHHHHHhhhcCCCChhHHHHHhhcCCccccCCCCCccccc
Q 008583 210 AHVAIRTVRRFLEKQKDKISAVVFCTTTA--S--DTEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDE 281 (560)
Q Consensus 210 A~i~l~~v~~fl~~~~~~i~~V~fv~~~~--~--~~~~y~~~l~~yfpr~~~e~~~~~~~lp~~~g~~~Ge~~~~e 281 (560)
-.-+|+.|.+||+++++.+ |++.+..+ . ..+.|.+++..+.-....-.-.....+| .+|+.-|.+|+=.
T Consensus 75 ~~dvL~~i~~FL~~nP~E~--Vil~l~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~P-tLge~RGKIVLl~ 147 (279)
T cd08586 75 FGDVLNECYSFLDANPSET--IIMSLKQEGSGDGNTDSFAEIFKEYLDNYPSYFYYTESKIP-TLGEVRGKIVLLR 147 (279)
T ss_pred HHHHHHHHHHHHHhCCCcE--EEEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCCC-chHHhcccEEEEE
Confidence 4567889999999998533 32222222 1 1456666665443222111001112223 6787788888544
No 47
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=20.20 E-value=2.8e+02 Score=24.70 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCC---CccEEEEEecChhHHHHHHHHhhhcCC
Q 008583 206 REPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (560)
Q Consensus 206 ~~~~A~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (560)
.++-++.+++.++..|+.... .+-++.+.+.+..++..+.+....||+
T Consensus 46 ~~~Q~~~~~~ni~~~L~aaG~~~~~Vvk~~vyl~d~~~~~~~~~v~~~~f~ 96 (129)
T PRK11401 46 VQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFD 96 (129)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHhC
Confidence 344555566666666666542 344555555667888888888888887
Done!