BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008584
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SRP|A Chain A, Structural Analysis Of Serratia Protease
Length = 471
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 419 ESHPT---LSFKERSELCRCLNYKKLT---LEASKYLAKNPKIPPNVAIQALMSQHSKLP 472
E +PT +++ E + ++Y T + + A P + AIQ L +
Sbjct: 194 EGNPTYRDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQHLYGANLSTR 253
Query: 473 TKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTERFSGENENVRLNL 525
T D S+T R +T NSQ V++ AG +DT FSG N R+NL
Sbjct: 254 TGDTVYGFNSNTGRDFLSTTSNSQKVIFAAWDAGG-NDTFDFSGYTANQRINL 305
>pdb|1SMP|A Chain A, Crystal Structure Of A Complex Between Serratia Marcescens
Metallo-Protease And An Inhibitor From Erwinia
Chrysanthemi
Length = 471
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 419 ESHPT---LSFKERSELCRCLNYKKLT---LEASKYLAKNPKIPPNVAIQALMSQHSKLP 472
E +PT +++ E + ++Y T + + A P + AIQ L +
Sbjct: 194 EGNPTYNDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQHLYGANLSTR 253
Query: 473 TKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTERFSGENENVRLNL 525
T D S+T R +T NSQ V++ AG +DT FSG N R+NL
Sbjct: 254 TGDTVYGFNSNTGRDFLSTTSNSQKVIFAAWDAGG-NDTFDFSGYTANQRINL 305
>pdb|1SAT|A Chain A, Crystal Structure Of The 50 Kda Metallo Protease From S.
Marcescens
Length = 471
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 419 ESHPT---LSFKERSELCRCLNYKKLT---LEASKYLAKNPKIPPNVAIQALMSQHSKLP 472
E PT +++ E + ++Y T + + A P + AIQ L +
Sbjct: 194 EGDPTYADVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQHLYGANLSTR 253
Query: 473 TKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTERFSGENENVRLNL 525
T D S+T R +T NSQ V++ AG +DT FSG N R+NL
Sbjct: 254 TGDTVYGFNSNTGRDFLSTTSNSQKVIFAAWDAGG-NDTFDFSGYTANQRINL 305
>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor
Length = 471
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 419 ESHPT---LSFKERSELCRCLNYKKLT---LEASKYLAKNPKIPPNVAIQALMSQHSKLP 472
E PT +++ E + ++Y T + + A P + AIQ L +
Sbjct: 194 EGDPTYNDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQHLYGANLSTR 253
Query: 473 TKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTERFSGENENVRLNL 525
T D S+T R +T NSQ V++ AG +DT FSG N R+NL
Sbjct: 254 TGDTVYGFNSNTGRDFLSTTSNSQKVIFAAWDAGG-NDTFDFSGYTANQRINL 305
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 432 LCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPS 491
+C + + + + P I AIQ L + T D S+T R +
Sbjct: 208 ICSYWGENETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTA 267
Query: 492 TKNSQVVLYNGAGAGVIDDTERFSGENENVRLNL 525
T +S+ ++++ AG D T FSG + N R+NL
Sbjct: 268 TDSSKALIFSVWDAGGTD-TFDFSGYSNNQRINL 300
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 419 ESHPTLS---FKERSELCRCLNY---KKLTLEASKYLAKNPKIPPNVAIQALMSQHSKLP 472
E P+ + + E S L+Y + + + + P I AIQ L +
Sbjct: 189 EGDPSYNDAVYAEDSYQFSILSYWGENETGADYNGHYGGAPMIDDIAAIQRLYGANMTTR 248
Query: 473 TKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTERFSGENENVRLNL 525
T D S+T R +T +S+ ++++ AG D T FSG + N R+NL
Sbjct: 249 TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTD-TFDFSGYSNNQRINL 300
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 453 PKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTE 512
P I AIQ L + T D S+T R +T +S+ ++++ AG D T
Sbjct: 229 PMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTD-TF 287
Query: 513 RFSGENENVRLNL 525
FSG + N R+NL
Sbjct: 288 DFSGYSNNQRINL 300
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 453 PKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTE 512
P I AIQ L + T D S+T R +T +S+ ++++ AG D T
Sbjct: 229 PMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTD-TF 287
Query: 513 RFSGENENVRLNL 525
FSG + N R+NL
Sbjct: 288 DFSGYSNNQRINL 300
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 453 PKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTE 512
P I AIQ L + T D S+T R +T +S+ ++++ AG D T
Sbjct: 229 PMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTD-TF 287
Query: 513 RFSGENENVRLNL 525
FSG + N R+NL
Sbjct: 288 DFSGYSNNQRINL 300
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 453 PKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTE 512
P I AIQ L + T D S+T R +T +S+ ++++ AG D T
Sbjct: 246 PMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTD-TF 304
Query: 513 RFSGENENVRLNL 525
FSG + N R+NL
Sbjct: 305 DFSGYSNNQRINL 317
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 453 PKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTE 512
P I AIQ L + T D S+T R +T +S+ ++++ AG D T
Sbjct: 246 PMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTD-TF 304
Query: 513 RFSGENENVRLNL 525
FSG + N R+NL
Sbjct: 305 DFSGYSNNQRINL 317
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 453 PKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNSQVVLYNGAGAGVIDDTE 512
P I AIQ L + T D S+T R +T +S+ ++++ AG D T
Sbjct: 246 PMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTD-TF 304
Query: 513 RFSGENENVRLNL 525
FSG + N R+NL
Sbjct: 305 DFSGYSNNQRINL 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,703,745
Number of Sequences: 62578
Number of extensions: 559312
Number of successful extensions: 1076
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 19
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)