Query 008584
Match_columns 560
No_of_seqs 250 out of 735
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 14:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 3.3E-86 7.2E-91 666.1 20.1 239 202-446 1-258 (258)
2 PHA02790 Kelch-like protein; P 99.8 1.1E-19 2.3E-24 198.7 10.7 110 3-134 21-136 (480)
3 KOG4441 Proteins containing BT 99.8 1.7E-19 3.6E-24 201.3 12.0 120 2-132 34-160 (571)
4 PHA02713 hypothetical protein; 99.8 1.7E-18 3.6E-23 192.8 13.0 112 2-134 23-139 (557)
5 PHA03098 kelch-like protein; P 99.7 6.5E-17 1.4E-21 177.8 13.7 122 3-145 8-135 (534)
6 PF00651 BTB: BTB/POZ domain; 99.6 2.9E-15 6.3E-20 130.1 10.7 97 2-108 8-110 (111)
7 smart00225 BTB Broad-Complex, 99.5 3E-14 6.5E-19 116.6 8.7 86 6-102 1-90 (90)
8 KOG2075 Topoisomerase TOP1-int 99.0 2.4E-09 5.1E-14 115.2 13.5 197 3-271 113-317 (521)
9 KOG4350 Uncharacterized conser 98.9 1.1E-09 2.5E-14 115.4 4.7 100 3-110 43-146 (620)
10 KOG4591 Uncharacterized conser 98.4 1.4E-06 2.9E-11 85.4 8.4 114 2-134 64-182 (280)
11 KOG4682 Uncharacterized conser 98.3 2.6E-06 5.6E-11 90.6 9.2 125 3-146 68-201 (488)
12 KOG0783 Uncharacterized conser 98.0 4.2E-06 9E-11 95.1 5.1 61 1-64 555-631 (1267)
13 KOG0783 Uncharacterized conser 98.0 1.1E-05 2.3E-10 91.9 7.9 124 6-147 712-847 (1267)
14 PF11822 DUF3342: Domain of un 97.8 2.2E-05 4.7E-10 82.1 4.4 91 7-109 1-104 (317)
15 smart00512 Skp1 Found in Skp1 96.9 0.003 6.5E-08 55.7 7.2 78 7-87 4-104 (104)
16 KOG3473 RNA polymerase II tran 96.7 0.0065 1.4E-07 53.6 7.3 77 7-86 19-111 (112)
17 KOG2716 Polymerase delta-inter 95.8 0.055 1.2E-06 54.8 9.6 90 7-108 7-104 (230)
18 PF02214 BTB_2: BTB/POZ domain 95.7 0.015 3.3E-07 49.9 4.7 79 7-89 1-88 (94)
19 PF03931 Skp1_POZ: Skp1 family 93.9 0.29 6.3E-06 39.4 7.3 55 7-64 3-59 (62)
20 KOG2838 Uncharacterized conser 93.6 0.1 2.2E-06 54.0 5.0 74 4-81 130-212 (401)
21 KOG1724 SCF ubiquitin ligase, 91.6 0.98 2.1E-05 43.6 8.6 94 7-110 7-128 (162)
22 KOG2838 Uncharacterized conser 87.2 1.4 3E-05 46.0 6.2 52 16-71 262-329 (401)
23 KOG0511 Ankyrin repeat protein 84.5 1.9 4.1E-05 46.7 5.9 93 7-107 295-393 (516)
24 PF01466 Skp1: Skp1 family, di 71.0 4.9 0.00011 33.7 3.4 34 70-110 11-44 (78)
25 KOG2714 SETA binding protein S 67.6 14 0.0003 41.0 6.7 79 7-89 13-99 (465)
26 PF08581 Tup_N: Tup N-terminal 65.4 9 0.0002 32.8 3.9 25 523-547 39-63 (79)
27 COG5201 SKP1 SCF ubiquitin lig 64.4 26 0.00057 33.0 6.9 93 6-109 3-122 (158)
28 TIGR01834 PHA_synth_III_E poly 59.0 11 0.00024 40.2 4.0 30 522-551 288-317 (320)
29 KOG0511 Ankyrin repeat protein 58.6 3.3 7.1E-05 45.0 0.1 58 5-65 150-210 (516)
30 PF04508 Pox_A_type_inc: Viral 56.5 13 0.00028 24.8 2.5 18 524-541 2-19 (23)
31 PF14363 AAA_assoc: Domain ass 52.4 8.5 0.00018 33.8 1.6 41 399-440 30-70 (98)
32 PF01166 TSC22: TSC-22/dip/bun 49.7 33 0.00071 27.9 4.4 32 514-545 12-43 (59)
33 PF10473 CENP-F_leu_zip: Leuci 43.0 33 0.00072 32.5 4.1 36 513-548 77-112 (140)
34 PF14077 WD40_alt: Alternative 42.5 16 0.00036 28.2 1.6 19 526-544 14-32 (48)
35 KOG3840 Uncharaterized conserv 42.0 50 0.0011 35.3 5.6 80 7-90 98-187 (438)
36 KOG1665 AFH1-interacting prote 41.2 94 0.002 32.0 7.1 85 7-103 11-105 (302)
37 COG2433 Uncharacterized conser 41.2 29 0.00064 40.0 4.0 190 339-547 275-467 (652)
38 PF13764 E3_UbLigase_R4: E3 ub 38.2 20 0.00044 42.8 2.3 75 324-424 252-335 (802)
39 PF07407 Seadorna_VP6: Seadorn 36.1 47 0.001 35.7 4.3 33 508-540 31-63 (420)
40 PF10929 DUF2811: Protein of u 30.1 36 0.00078 27.6 1.8 19 408-426 8-26 (57)
41 PF08172 CASP_C: CASP C termin 29.7 51 0.0011 34.0 3.4 23 526-548 89-111 (248)
42 TIGR02894 DNA_bind_RsfA transc 29.3 83 0.0018 30.6 4.4 32 515-546 103-134 (161)
43 KOG4571 Activating transcripti 28.7 63 0.0014 34.2 3.8 36 516-551 255-290 (294)
44 PF07716 bZIP_2: Basic region 28.3 1E+02 0.0022 24.0 4.1 32 519-550 21-52 (54)
45 COG3510 CmcI Cephalosporin hyd 26.4 34 0.00074 34.5 1.3 35 395-429 182-218 (237)
46 KOG1987 Speckle-type POZ prote 25.5 42 0.00092 34.4 1.9 85 15-109 110-201 (297)
47 PF08776 VASP_tetra: VASP tetr 24.2 1.4E+02 0.0029 22.7 3.8 23 524-546 4-27 (40)
48 PF11123 DNA_Packaging_2: DNA 22.9 50 0.0011 28.3 1.5 16 408-423 31-46 (82)
49 PF10932 DUF2783: Protein of u 20.6 64 0.0014 26.4 1.6 23 407-432 10-32 (60)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=3.3e-86 Score=666.09 Aligned_cols=239 Identities=39% Similarity=0.642 Sum_probs=216.3
Q ss_pred CCchhhhhcccChHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhhccCCCCC---------CCCCCCccchhHHHHHhh
Q 008584 202 KAWWFDDLTILSPVIIEKISKGLGAYGAENNSLILTRFLLHYLKGCVQAQSKG---------GGYGGNGSYSGLADTAVH 272 (560)
Q Consensus 202 ~dWW~eDl~~L~~~~~~rvi~am~~~~~~~~~~~i~~~l~~Ya~~~l~~~~~~---------~~~~~~~~~r~llE~iv~ 272 (560)
+|||||||+.|++|+|+|||.+|++ +++++++|+++|+|||++|+|+.++. .......+||.+||+||.
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~--~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~ 78 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKS--KGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVS 78 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHH
Confidence 4899999999999999999999975 69999999999999999999997321 123456789999999999
Q ss_pred ccccCCCCccchhHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccCcccccccCCCCCCCCCCcccchHHHHHHHHHHH
Q 008584 273 GVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRAGLENMIGGMLDKATLDDLLVSGQGYGNGHDRGVYDVNLVIRLIRIFV 352 (560)
Q Consensus 273 lllp~~k~~~s~~fLf~lLr~a~~l~as~~cr~~LE~rIg~qLd~AtldDLLiP~~~y~~~~~~~~yDvd~V~ril~~Fl 352 (560)
+ +|.+|+++||+|||+|||+|+++++|+.||.+||+|||.|||||||||||||+ +|+ ...+.||||+|+|||++||
T Consensus 79 l-LP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~--~~~t~yDVd~V~riv~~Fl 154 (258)
T PF03000_consen 79 L-LPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPS--GEDTLYDVDLVQRIVEHFL 154 (258)
T ss_pred h-CCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCC--cccchhhHHHHHHHHHHHH
Confidence 7 57899999999999999999999999999999999999999999999999997 222 2235699999999999999
Q ss_pred hcCCC----------CCcccchhhHHHHHHhhhhhhhhccCCCCCChhHHHHHHHhcCCcccccCcchhHHHHHHHhhCC
Q 008584 353 NSNSS----------NSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHP 422 (560)
Q Consensus 353 ~~~~~----------~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~KF~~Lae~lPd~aR~~~DgLYrAIDiYLk~Hp 422 (560)
.+.+. .....+.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp 234 (258)
T PF03000_consen 155 SQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP 234 (258)
T ss_pred hcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence 88321 11234678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHhhhhhcccccccCCCHHHh
Q 008584 423 TLSFKERSELCRCLNYKKLTLEAS 446 (560)
Q Consensus 423 ~lse~Er~~lCr~ldcqKLS~EAc 446 (560)
+||++||++||++|||||||+|||
T Consensus 235 ~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 235 GLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred cCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.80 E-value=1.1e-19 Score=198.71 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=93.8
Q ss_pred CCccEEEEecCceeEechHHHHhhcCHHHHHhhc----ccCCCeEEe--cCCCCCHHHHHHHHHHHhcCCccccChhhHH
Q 008584 3 QLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIK----QESRRVIEI--KGFPGGPTGFELVSRFCYNNGRIKITVSNVS 76 (560)
Q Consensus 3 ~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~----e~~~~~i~L--~d~pgG~e~Felv~~FcYg~g~i~it~~NV~ 76 (560)
++|||+..++ .+|++||.|||++|+|||+||+ |++ .+|.+ .+++ +++|+.+++|+|| |+|.||.+||+
T Consensus 21 ~~~~~~~~~~--~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~--~~~l~~lldy~YT-g~l~it~~nV~ 94 (480)
T PHA02790 21 KFKTIIEAIG--GNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLD--IHSLTSIVIYSYT-GKVYIDSHNVV 94 (480)
T ss_pred hhceEEEEcC--cEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcC--HHHHHHHHHhhee-eeEEEecccHH
Confidence 6899998884 5999999999999999999998 443 34555 3777 7999999999999 99999999999
Q ss_pred HHHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhC
Q 008584 77 ILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCG 134 (560)
Q Consensus 77 ~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~ 134 (560)
.|+.||.+|||++ |++.|++||.+++.++ ||.++..+|+.++
T Consensus 95 ~ll~aA~~Lqi~~-------v~~~C~~fL~~~l~~~---------NCl~i~~~A~~y~ 136 (480)
T PHA02790 95 NLLRASILTSVEF-------IIYTCINFILRDFRKE---------YCVECYMMGIEYG 136 (480)
T ss_pred HHHHHHHHhChHH-------HHHHHHHHHHhhCCcc---------hHHHHHHHHHHhC
Confidence 9999999999997 9999999999999775 5555555555544
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=201.25 Aligned_cols=120 Identities=23% Similarity=0.427 Sum_probs=108.2
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhc----ccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIK----QESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSI 77 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~----e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~ 77 (560)
.++|||++.|++ .+|++||.|||++|+|||+||+ |+++.+|+|++++ +++++++++|+|| |++.|+.+||+.
T Consensus 34 ~~lcDv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt-~~i~i~~~nVq~ 109 (571)
T KOG4441|consen 34 GLLCDVTLLVGD-REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYT-GKLEISEDNVQE 109 (571)
T ss_pred CCCceEEEEECC-eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhc-ceEEechHhHHH
Confidence 369999999985 9999999999999999999999 5667799999988 7999999999999 999999999999
Q ss_pred HHHHHhHhccccccCCcchHHHHHHHHHHhhhccC-hhH--HHHHhhcchhHHHHHHH
Q 008584 78 LHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWS-WSD--IIASLKSCESIFKYAYS 132 (560)
Q Consensus 78 L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~s-w~~--~i~~L~sC~~L~~~Ae~ 132 (560)
|+.||.+|||++ |.+.|++||.+++.++ +.+ .++.+++|.+|.+.|+.
T Consensus 110 ll~aA~~lQi~~-------v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~ 160 (571)
T KOG4441|consen 110 LLEAASLLQIPE-------VVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADE 160 (571)
T ss_pred HHHHHHHhhhHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999997 8999999999999877 332 66788888888777765
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.77 E-value=1.7e-18 Score=192.77 Aligned_cols=112 Identities=17% Similarity=0.346 Sum_probs=97.0
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhc----cc-CCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIK----QE-SRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVS 76 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~----e~-~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~ 76 (560)
..+|||+|.|+++++|++||.+||++|+|||+||+ |. .+.+|+|++++ +++|+.+++|+|| |+ |+++||+
T Consensus 23 ~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt-~~--i~~~nv~ 97 (557)
T PHA02713 23 DILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYN-RH--ISSMNVI 97 (557)
T ss_pred CCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcC-CC--CCHHHHH
Confidence 47999999996347999999999999999999998 23 25689999998 7999999999999 87 7999999
Q ss_pred HHHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhC
Q 008584 77 ILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCG 134 (560)
Q Consensus 77 ~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~ 134 (560)
.|+.||++|||++ |++.|++||.+++.. .||..+...+..++
T Consensus 98 ~ll~aA~~lqi~~-------l~~~C~~~l~~~l~~---------~NCl~i~~~~~~~~ 139 (557)
T PHA02713 98 DVLKCADYLLIDD-------LVTDCESYIKDYTNH---------DTCIYMYHRLYEMS 139 (557)
T ss_pred HHHHHHHHHCHHH-------HHHHHHHHHHhhCCc---------cchHHHHHHHHhcc
Confidence 9999999999997 999999999999965 46666665555544
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.71 E-value=6.5e-17 Score=177.78 Aligned_cols=122 Identities=20% Similarity=0.350 Sum_probs=103.8
Q ss_pred CCccEEEEe--cCceeEechHHHHhhcCHHHHHhhccc-CCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHHH
Q 008584 3 QLCDIQIHV--NGHQTFFLNEQTITKYSERLKKIIKQE-SRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILH 79 (560)
Q Consensus 3 ~l~Dv~v~V--~g~~~F~lHK~~Las~S~yfr~lf~e~-~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~ 79 (560)
++|||+|.| +| ++|++||.+|+++|+||++||+.. .+.+|+|++ + +++|+.+++|+|+ |++.|+.+||..|+
T Consensus 8 ~~~Dv~l~~~~~~-~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~-~--~~~~~~~l~y~Yt-g~~~i~~~~~~~ll 82 (534)
T PHA03098 8 KFCDESIIIVNGG-GIIKVHKIILSSSSEYFKKMFKNNFKENEINLNI-D--YDSFNEVIKYIYT-GKINITSNNVKDIL 82 (534)
T ss_pred CCCCEEEEEEcCC-EEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecC-C--HHHHHHHHHHhcC-CceEEcHHHHHHHH
Confidence 689999998 75 899999999999999999999843 346899988 6 7999999999999 99999999999999
Q ss_pred HHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhCc---HHHHHHHHHH
Q 008584 80 CCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGL---VDKFICALLA 145 (560)
Q Consensus 80 cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~i---v~rcidsla~ 145 (560)
.||++|||++ |+..|++||.+.+.. .+|..++.+|+.++. .+.|.+-|+.
T Consensus 83 ~~A~~l~~~~-------l~~~C~~~l~~~l~~---------~nc~~~~~~a~~~~~~~L~~~~~~~i~~ 135 (534)
T PHA03098 83 SIANYLIIDF-------LINLCINYIIKIIDD---------NNCIDIYRFSFFYGCKKLYSAAYNYIRN 135 (534)
T ss_pred HHHHHhCcHH-------HHHHHHHHHHHhCCH---------hHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 9999999997 999999999998853 577777777777663 3344444443
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.62 E-value=2.9e-15 Score=130.13 Aligned_cols=97 Identities=23% Similarity=0.413 Sum_probs=84.5
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccC--CC---eEEecCCCCCHHHHHHHHHHHhcCCccccC-hhhH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQES--RR---VIEIKGFPGGPTGFELVSRFCYNNGRIKIT-VSNV 75 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~--~~---~i~L~d~pgG~e~Felv~~FcYg~g~i~it-~~NV 75 (560)
..+||++|.|+++.+|++||.+|+++|+||++||.... .. +|.+.+++ +++|+.+++|+|+ +++.++ .+|+
T Consensus 8 ~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~-~~~~~~~~~~~ 84 (111)
T PF00651_consen 8 NEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYT-GEIEINSDENV 84 (111)
T ss_dssp TTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHH-SEEEEE-TTTH
T ss_pred CCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccC-CcccCCHHHHH
Confidence 46899999997238999999999999999999999662 22 57789998 7999999999999 999998 9999
Q ss_pred HHHHHHHhHhccccccCCcchHHHHHHHHHHhh
Q 008584 76 SILHCCSIFLGMTDTVSSTNNLLQQTESFLEGM 108 (560)
Q Consensus 76 ~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~ 108 (560)
..++..|++|+|++ |...|++||.+.
T Consensus 85 ~~ll~lA~~~~~~~-------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 85 EELLELADKLQIPE-------LKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHTTBHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHH-------HHHHHHHHHHhC
Confidence 99999999999996 999999999874
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.53 E-value=3e-14 Score=116.61 Aligned_cols=86 Identities=21% Similarity=0.408 Sum_probs=77.1
Q ss_pred cEEEEecCceeEechHHHHhhcCHHHHHhhccc----CCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHHHHH
Q 008584 6 DIQIHVNGHQTFFLNEQTITKYSERLKKIIKQE----SRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCC 81 (560)
Q Consensus 6 Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~----~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~cA 81 (560)
||++.|+| .+|++||.+|+++|+||++||... ....+.+.+.+ +++|+.+++|+|+ +++.+++.|+..++.+
T Consensus 1 dv~i~v~~-~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~-~~~~~~~~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVVGG-KKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYT-GKLDLPEENVEELLEL 76 (90)
T ss_pred CeEEEECC-EEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecC-ceeecCHHHHHHHHHH
Confidence 78999975 899999999999999999999854 34578888877 7999999999999 9999999999999999
Q ss_pred HhHhccccccCCcchHHHHHH
Q 008584 82 SIFLGMTDTVSSTNNLLQQTE 102 (560)
Q Consensus 82 Ae~LqMte~~~~~~NL~~~~e 102 (560)
|++++|++ |+..|+
T Consensus 77 a~~~~~~~-------l~~~c~ 90 (90)
T smart00225 77 ADYLQIPG-------LVELCE 90 (90)
T ss_pred HHHHCcHH-------HHhhhC
Confidence 99999996 776663
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.03 E-value=2.4e-09 Score=115.22 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=142.3
Q ss_pred CCccEEEEecC----ceeEechHHHHhhcCHHHHHhhcc----cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhh
Q 008584 3 QLCDIQIHVNG----HQTFFLNEQTITKYSERLKKIIKQ----ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSN 74 (560)
Q Consensus 3 ~l~Dv~v~V~g----~~~F~lHK~~Las~S~yfr~lf~e----~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~N 74 (560)
.++|+.+.|++ -+.||+||++|+..|.-|.+||.. ....+|+++|+. |.+|...++|+|+ ..+.+.++|
T Consensus 113 ~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYs-dev~~~~dt 189 (521)
T KOG2075|consen 113 LLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYS-DEVKLAADT 189 (521)
T ss_pred ccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhc-chhhhhHHH
Confidence 56899998863 267999999999999999999983 324489999998 7999999999999 899999999
Q ss_pred HHHHHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhCcHHHHHHHHHHHHccCCccc
Q 008584 75 VSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDLS 154 (560)
Q Consensus 75 V~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~iv~rcidsla~ka~~~~~~~ 154 (560)
|..++-||.-.-.+. |...|.+||+..+. -.+.+..|.+|..++ ++-.++++|++.|.-.+- +.
T Consensus 190 vi~tl~~AkKY~Vpa-------Ler~CVkflr~~l~--~~naf~~L~q~A~lf---~ep~Li~~c~e~id~~~~-~a--- 253 (521)
T KOG2075|consen 190 VITTLYAAKKYLVPA-------LERQCVKFLRKNLM--ADNAFLELFQRAKLF---DEPSLISICLEVIDKSFE-DA--- 253 (521)
T ss_pred HHHHHHHHHHhhhHH-------HHHHHHHHHHHhcC--ChHHHHHHHHHHHhh---cCHHHHHHHHHHhhhHHH-hh---
Confidence 999999997666653 99999999999886 467788888886655 444589999998874331 10
Q ss_pred ccccCCCCCCCCCCCCCccccccccCCCCCCCCcccCCCCCCCCCCCCCchhhhhcccChHHHHHHHHHHhhhcCCCChh
Q 008584 155 LIIASPSTPSSSSSPETSYGCRFSCTSTKTTPESIIKPSCSSSPSPSKAWWFDDLTILSPVIIEKISKGLGAYGAENNSL 234 (560)
Q Consensus 155 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~~~rvi~am~~~~~~~~~~ 234 (560)
-..-||-|.-.+ +++|..|++.= ..+.+.-
T Consensus 254 ----------------------------------------------l~~EGf~did~~-~dt~~evl~r~---~l~~~e~ 283 (521)
T KOG2075|consen 254 ----------------------------------------------LTPEGFCDIDST-RDTYEEVLRRD---TLEAREF 283 (521)
T ss_pred ----------------------------------------------hCccceeehhhH-HHHHHHHHhhc---ccchhHH
Confidence 011256666555 78888777533 2556666
Q ss_pred hHHHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHh
Q 008584 235 ILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAV 271 (560)
Q Consensus 235 ~i~~~l~~Ya~~~l~~~~~~~~~~~~~~~r~llE~iv 271 (560)
.+.+++..|+.---+ +++.....+..|.++-...
T Consensus 284 ~lfeA~lkw~~~e~~---rs~~~~~~~~~~~vl~~~l 317 (521)
T KOG2075|consen 284 RLFEAALKWAEAECQ---RSGGPVNGQNKRKVLGRAL 317 (521)
T ss_pred HHHHHHHhhccCcch---hhcCCCCccchhhhhhhee
Confidence 677777777763322 1221122334556655443
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.89 E-value=1.1e-09 Score=115.41 Aligned_cols=100 Identities=15% Similarity=0.310 Sum_probs=71.5
Q ss_pred CCccEEEEecCceeEechHHHHhhcCHHHHHhhc----ccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHH
Q 008584 3 QLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIK----QESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSIL 78 (560)
Q Consensus 3 ~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~----e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L 78 (560)
..+||++.|++ +.|++||.+||++|.|||+|+- |+.+..|.|++-. +++|..+++|+|+ |++.++...--.|
T Consensus 43 ~y~DVtfvve~-~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~--~eAF~~lLrYiYt-g~~~l~~~~ed~l 118 (620)
T KOG4350|consen 43 DYSDVTFVVED-TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETN--SEAFRALLRYIYT-GKIDLAGVEEDIL 118 (620)
T ss_pred cccceEEEEec-cccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccccc--HHHHHHHHHHHhh-cceecccchHHHH
Confidence 57899999984 8999999999999999999985 6667788887754 7999999999999 9998754322222
Q ss_pred HHHHhHhccccccCCcchHHHHHHHHHHhhhc
Q 008584 79 HCCSIFLGMTDTVSSTNNLLQQTESFLEGMFY 110 (560)
Q Consensus 79 ~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~ 110 (560)
+ +||.|-..|+ --.|-....+||.+.+.
T Consensus 119 l---d~LslAh~Yg-f~~Le~aiSeYl~~iL~ 146 (620)
T KOG4350|consen 119 L---DYLSLAHRYG-FIQLETAISEYLKEILK 146 (620)
T ss_pred H---HHHHHHHhcC-cHHHHHHHHHHHHHHHc
Confidence 1 3333333332 22355555555555443
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.35 E-value=1.4e-06 Score=85.40 Aligned_cols=114 Identities=13% Similarity=0.198 Sum_probs=89.6
Q ss_pred CCCccEEEEecC--ceeEechHHHHhhcCHHHHHhhccc-CCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhH--H
Q 008584 2 SQLCDIQIHVNG--HQTFFLNEQTITKYSERLKKIIKQE-SRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNV--S 76 (560)
Q Consensus 2 ~~l~Dv~v~V~g--~~~F~lHK~~Las~S~yfr~lf~e~-~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV--~ 76 (560)
++++||++.++| +..+++||+|||++|++.+=--... +.....+.|.. +++|..+++++|| .+|++..+.+ -
T Consensus 64 ~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~dekse~~~~dDad--~Ea~~t~iRWIYT-DEidfk~dD~~L~ 140 (280)
T KOG4591|consen 64 EQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDEKSEELDLDDAD--FEAFHTAIRWIYT-DEIDFKEDDEFLL 140 (280)
T ss_pred ccccceeEEecCCccccCchhhhhhhhhcchhhhccCCCcchhhhcccccC--HHHHHHhheeeec-cccccccchHHHH
Confidence 578999999964 3679999999999999775311111 12245567776 7999999999999 8998877655 4
Q ss_pred HHHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhC
Q 008584 77 ILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCG 134 (560)
Q Consensus 77 ~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~ 134 (560)
.|...|.-+|+.- |.++|+.=|...+ ...+|-.++..||+++
T Consensus 141 el~e~An~FqLe~-------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n 182 (280)
T KOG4591|consen 141 ELCELANRFQLEL-------LKERCEKGLGALL---------HVDNCIKFYEFAEELN 182 (280)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhh
Confidence 6677889999885 8899998887766 4579999999999987
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.28 E-value=2.6e-06 Score=90.57 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=102.0
Q ss_pred CCccEEEEecCceeEechHHHHhhcCHHHHHhhc----ccCCCeEE--ecCCCCCHHHHHHHHHHHhcCCccccChhhHH
Q 008584 3 QLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIK----QESRRVIE--IKGFPGGPTGFELVSRFCYNNGRIKITVSNVS 76 (560)
Q Consensus 3 ~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~----e~~~~~i~--L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~ 76 (560)
+-+||+|..-| .+.++||.-| ..|+||..||. |++...|. |.|=--...+|..+..=.|. .+|+|.++-|.
T Consensus 68 enSDv~l~alg-~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~-dEveI~l~dv~ 144 (488)
T KOG4682|consen 68 ENSDVILEALG-FEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYR-DEVEIKLSDVV 144 (488)
T ss_pred CCcceehhhcc-ceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhh-hheeccHHHHH
Confidence 45899999976 8999999877 88999999998 45555444 44433347999999999999 99999999999
Q ss_pred HHHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhCcHH---HHHHHHHHH
Q 008584 77 ILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVD---KFICALLAK 146 (560)
Q Consensus 77 ~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~iv~---rcidsla~k 146 (560)
.++.||.+||++. |+++|.+-+.+.+.+ ++-...+..+..+|+++ +|.+-+-..
T Consensus 145 gvlAaA~~lqldg-------l~qrC~evMie~lsp---------kta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 145 GVLAAACLLQLDG-------LIQRCGEVMIETLSP---------KTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred HHHHHHHHHHHhh-------HHHHHHHHHHHhcCh---------hhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999999995 999999999998865 45556777888887765 677666544
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.04 E-value=4.2e-06 Score=95.06 Aligned_cols=61 Identities=21% Similarity=0.434 Sum_probs=51.5
Q ss_pred CCCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCC----------------CeEEecCCCCCHHHHHHHHHHHhc
Q 008584 1 MSQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESR----------------RVIEIKGFPGGPTGFELVSRFCYN 64 (560)
Q Consensus 1 m~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~----------------~~i~L~d~pgG~e~Felv~~FcYg 64 (560)
|.-..||+++|++ .-||+||++|+++|++||++|-.... .+|.+.++| |.+||+++.|+|+
T Consensus 555 ~ds~hDVtf~vg~-~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYt 631 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGT-SMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYT 631 (1267)
T ss_pred ccccceEEEEecC-eecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhc
Confidence 3456799999975 89999999999999999999973211 156678999 6999999999999
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.03 E-value=1.1e-05 Score=91.90 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=95.8
Q ss_pred cEEEEecCceeEechHHHHhhcCHHHHHhhc----ccCCCeEEecCCCCCHHHHHHHHHHHhcCCcccc-----ChhhHH
Q 008584 6 DIQIHVNGHQTFFLNEQTITKYSERLKKIIK----QESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKI-----TVSNVS 76 (560)
Q Consensus 6 Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~----e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~i-----t~~NV~ 76 (560)
|+.|...+|+.|.+||.+|++|+.||..||. |++ .|.....|-.+|.++.+++|.|+..+.++ ..+=+.
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~s--S~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~ 789 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESS--SITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMF 789 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhc--cceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhH
Confidence 4444443348899999999999999999998 444 46667778778999999999996455543 223356
Q ss_pred HHHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhC---cHHHHHHHHHHHH
Q 008584 77 ILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCG---LVDKFICALLAKI 147 (560)
Q Consensus 77 ~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~---iv~rcidsla~ka 147 (560)
.++..|+.|-+++ |.+.||.-|.+-+ .|++|..|+.+|-.++ +-.||+|=|.-.+
T Consensus 790 ~il~iaDqlli~~-------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 790 EILSIADQLLILE-------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 7777888888887 8899999888877 5789999998887663 5669999877654
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.77 E-value=2.2e-05 Score=82.12 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=74.6
Q ss_pred EEEEecCc-----eeEechHHHHhhcCHHHHHhhcc-----cCCCeEEe--c-CCCCCHHHHHHHHHHHhcCCccccChh
Q 008584 7 IQIHVNGH-----QTFFLNEQTITKYSERLKKIIKQ-----ESRRVIEI--K-GFPGGPTGFELVSRFCYNNGRIKITVS 73 (560)
Q Consensus 7 v~v~V~g~-----~~F~lHK~~Las~S~yfr~lf~e-----~~~~~i~L--~-d~pgG~e~Felv~~FcYg~g~i~it~~ 73 (560)
|+|+|-++ +.|.+.+.+|.+.=+||+..+.. .+...|.| | |+ .+|+-+++|+++ ....||++
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~-~~p~l~~~ 75 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKG-EPPSLTPS 75 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhc-CCCcCCcC
Confidence 45666322 46999999999999999999942 22234544 3 55 599999999999 89999999
Q ss_pred hHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhh
Q 008584 74 NVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMF 109 (560)
Q Consensus 74 NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v 109 (560)
||++++-.|+||||++ |++.|-.|+..++
T Consensus 76 NvvsIliSS~FL~M~~-------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 76 NVVSILISSEFLQMES-------LVEECLQYCHDHM 104 (317)
T ss_pred cEEEeEehhhhhccHH-------HHHHHHHHHHHhH
Confidence 9999999999999997 9999999986654
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.92 E-value=0.003 Score=55.69 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=60.8
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhcccCC-----CeEEecCCCCCHHHHHHHHHHHhcCCc----------c---
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQESR-----RVIEIKGFPGGPTGFELVSRFCYNNGR----------I--- 68 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~-----~~i~L~d~pgG~e~Felv~~FcYg~g~----------i--- 68 (560)
|++.-.+|..|.+.+.+. ..|+-++.|+.+... ..|.|++++ +.+++.+++||+-... +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 566655568999999865 799999999985322 368899999 4999999999984110 1
Q ss_pred -----ccChhhHHHHHHHHhHhcc
Q 008584 69 -----KITVSNVSILHCCSIFLGM 87 (560)
Q Consensus 69 -----~it~~NV~~L~cAAe~LqM 87 (560)
.+..+++..|+.||+||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1677789999999999986
No 16
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.68 E-value=0.0065 Score=53.61 Aligned_cols=77 Identities=13% Similarity=0.289 Sum_probs=61.7
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhc------ccCCCeEEecCCCCCHHHHHHHHHHH-----hcCC-----cccc
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIK------QESRRVIEIKGFPGGPTGFELVSRFC-----YNNG-----RIKI 70 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~------e~~~~~i~L~d~pgG~e~Felv~~Fc-----Yg~g-----~i~i 70 (560)
|.+.-++|++|-+-| -.|--||-+|+|+. +...++|.+.+|| +..+|.+..|. |+|. +++|
T Consensus 19 VkLvS~Ddhefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEee-hhhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 344445568999855 47889999999998 3445689999999 79999998876 6643 3578
Q ss_pred ChhhHHHHHHHHhHhc
Q 008584 71 TVSNVSILHCCSIFLG 86 (560)
Q Consensus 71 t~~NV~~L~cAAe~Lq 86 (560)
-|+=+..|+.||+||+
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 9999999999999997
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.055 Score=54.84 Aligned_cols=90 Identities=19% Similarity=0.368 Sum_probs=72.4
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhccc-----CC-CeEEecCCCCCHHHHHHHHHHHhcCCcccc--ChhhHHHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQE-----SR-RVIEIKGFPGGPTGFELVSRFCYNNGRIKI--TVSNVSIL 78 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~-----~~-~~i~L~d~pgG~e~Felv~~FcYg~g~i~i--t~~NV~~L 78 (560)
|.+.||| ..|...|.-|....|+|+.|+... .. ..|-| |=+ |.=|+++++|.=. |.+.+ +.-++..|
T Consensus 7 vkLnvGG-~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRS--pKHF~~ILNfmRd-Gdv~LPe~~kel~El 81 (230)
T KOG2716|consen 7 VKLNVGG-TIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRS--PKHFDTILNFMRD-GDVDLPESEKELKEL 81 (230)
T ss_pred EEEecCC-eEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCC--hhHHHHHHHhhhc-ccccCccchHHHHHH
Confidence 5678976 899999999999999999999832 11 13433 333 5999999999997 66665 56688899
Q ss_pred HHHHhHhccccccCCcchHHHHHHHHHHhh
Q 008584 79 HCCSIFLGMTDTVSSTNNLLQQTESFLEGM 108 (560)
Q Consensus 79 ~cAAe~LqMte~~~~~~NL~~~~e~FL~~~ 108 (560)
+.=|+|..+++ |++.|+.=+...
T Consensus 82 ~~EA~fYlL~~-------Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 82 LREAEFYLLDG-------LVELCQSAIARL 104 (230)
T ss_pred HHHHHHhhHHH-------HHHHHHHHhhhc
Confidence 99999999996 999999877655
No 18
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.74 E-value=0.015 Score=49.86 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=58.1
Q ss_pred EEEEecCceeEechHHHHh-hcCHHHHHhhccc-------CCCeEEecCCCCCHHHHHHHHHHHhcCCccccC-hhhHHH
Q 008584 7 IQIHVNGHQTFFLNEQTIT-KYSERLKKIIKQE-------SRRVIEIKGFPGGPTGFELVSRFCYNNGRIKIT-VSNVSI 77 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~La-s~S~yfr~lf~e~-------~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it-~~NV~~ 77 (560)
|++.|+| +.|.+-+..|. ....+|.+|+... ....+-| |=+ |+.|+.|++|.-+++++... ...+..
T Consensus 1 V~lNVGG-~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRd--p~~F~~IL~ylr~~~~l~~~~~~~~~~ 76 (94)
T PF02214_consen 1 VRLNVGG-TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRD--PELFEYILNYLRTGGKLPIPDEICLEE 76 (94)
T ss_dssp EEEEETT-EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS---HHHHHHHHHHHHHTSSB---TTS-HHH
T ss_pred CEEEECC-EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccC--hhhhhHHHHHHhhcCccCCCCchhHHH
Confidence 6899976 99999999998 5567999999843 2235554 333 79999999999983455543 568899
Q ss_pred HHHHHhHhcccc
Q 008584 78 LHCCSIFLGMTD 89 (560)
Q Consensus 78 L~cAAe~LqMte 89 (560)
+...|+|.++.+
T Consensus 77 l~~Ea~fy~l~~ 88 (94)
T PF02214_consen 77 LLEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHHT-HH
T ss_pred HHHHHHHcCCCc
Confidence 999999999986
No 19
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.93 E-value=0.29 Score=39.36 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=43.4
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhcccCCC--eEEecCCCCCHHHHHHHHHHHhc
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRR--VIEIKGFPGGPTGFELVSRFCYN 64 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~--~i~L~d~pgG~e~Felv~~FcYg 64 (560)
|++.-.+|+.|.+.+.+ +..|+.++.|+...... .|.|++++ +.+++.+++||+-
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~~~Ipl~~v~--~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDEDEPIPLPNVS--SRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCGTEEEETTS---HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhcccccccccCccC--HHHHHHHHHHHHh
Confidence 56666566999998875 57999999999853332 69999999 5999999999973
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.57 E-value=0.1 Score=54.02 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=54.4
Q ss_pred CccEEEEecCceeEechHHHHhhcCHHHHHhhcccC--CC----eEEecCCCCCHHHHHHHHHHHhcCCccc---cChhh
Q 008584 4 LCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQES--RR----VIEIKGFPGGPTGFELVSRFCYNNGRIK---ITVSN 74 (560)
Q Consensus 4 l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~--~~----~i~L~d~pgG~e~Felv~~FcYg~g~i~---it~~N 74 (560)
..||-|... ++.|++||..|+++|++|+-+..... +. .|+.-+|. -++||..+++.|+ |+.- +.-.|
T Consensus 130 c~dldiiFk-eTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~t-gEfgmEd~~fqn 205 (401)
T KOG2838|consen 130 CGDLDIIFK-ETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLIT-GEFGMEDLGFQN 205 (401)
T ss_pred eccceeeee-eccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHh-cccchhhcCCch
Confidence 357778776 58999999999999999999887322 21 56666777 5899999999999 7653 33345
Q ss_pred HHHHHHH
Q 008584 75 VSILHCC 81 (560)
Q Consensus 75 V~~L~cA 81 (560)
+..|-.-
T Consensus 206 ~diL~QL 212 (401)
T KOG2838|consen 206 SDILEQL 212 (401)
T ss_pred HHHHHHH
Confidence 5554433
No 21
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.98 Score=43.63 Aligned_cols=94 Identities=15% Similarity=0.269 Sum_probs=71.6
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhcccC--CC--eEEecCCCCCHHHHHHHHHHHhcCCc---------------
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQES--RR--VIEIKGFPGGPTGFELVSRFCYNNGR--------------- 67 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~--~~--~i~L~d~pgG~e~Felv~~FcYg~g~--------------- 67 (560)
+.+.-.+|+.|.+-.. .+..|.-++.++.+.. .. .|-|+.+. +.+|.+++.|||-+..
T Consensus 7 ikL~SsDG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~ 83 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEET 83 (162)
T ss_pred EEEEccCCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccC
Confidence 3444434589999777 4588999999998532 22 68888888 5999999999996210
Q ss_pred ---------cccChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhhc
Q 008584 68 ---------IKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFY 110 (560)
Q Consensus 68 ---------i~it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~ 110 (560)
+.+...++..|.-||.||+|.. |++.||......+-
T Consensus 84 ~i~~WD~~Flk~d~~tLfdli~AAnyLdi~g-------Ll~~~ck~va~mik 128 (162)
T KOG1724|consen 84 DIPEWDAEFLKVDQGTLFDLILAANYLDIKG-------LLDLTCKTVANMIK 128 (162)
T ss_pred CccHHHHHHHhcCHHHHHHHHHHhhhcccHH-------HHHHHHHHHHHHHc
Confidence 1234568999999999999995 99999999988774
No 22
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.18 E-value=1.4 Score=45.96 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=38.0
Q ss_pred eEechHHHHhhcCHHHHHhhc----cc---C------CCeEEecC--CCCCHHHHHH-HHHHHhcCCccccC
Q 008584 16 TFFLNEQTITKYSERLKKIIK----QE---S------RRVIEIKG--FPGGPTGFEL-VSRFCYNNGRIKIT 71 (560)
Q Consensus 16 ~F~lHK~~Las~S~yfr~lf~----e~---~------~~~i~L~d--~pgG~e~Fel-v~~FcYg~g~i~it 71 (560)
++.+||.+.+++|++||.++- +. . ..+|.+.. || .+|.- .+.|.|| .+++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYT-D~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYT-DRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhhee-cccchh
Confidence 478999999999999999975 21 1 12677754 55 67764 5789999 787663
No 23
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=84.46 E-value=1.9 Score=46.74 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=63.7
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhc----ccC-CCeEEecCCC-CCHHHHHHHHHHHhcCCccccChhhHHHHHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIK----QES-RRVIEIKGFP-GGPTGFELVSRFCYNNGRIKITVSNVSILHC 80 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~----e~~-~~~i~L~d~p-gG~e~Felv~~FcYg~g~i~it~~NV~~L~c 80 (560)
|.+-+. ..+++|..++ +|+.||+.||+ |+. .+++.--.+| =.....|.+++|.|+ .+-+|-+.-...++-
T Consensus 295 iql~~~--~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~-d~tdi~~~~A~dvll 370 (516)
T KOG0511|consen 295 IQLPEE--DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYC-DQTDIIFDVASDVLL 370 (516)
T ss_pred cccccc--ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhc-ccccchHHHHhhHHH
Confidence 344443 4799999988 67889999998 322 2222212233 114788999999999 899999999999999
Q ss_pred HHhHhccccccCCcchHHHHHHHHHHh
Q 008584 81 CSIFLGMTDTVSSTNNLLQQTESFLEG 107 (560)
Q Consensus 81 AAe~LqMte~~~~~~NL~~~~e~FL~~ 107 (560)
-|+.|-+.++.. |...+-.-+.+
T Consensus 371 ~ad~lal~~dr~----Lkt~as~~itq 393 (516)
T KOG0511|consen 371 FADKLALADDRL----LKTAASAEITQ 393 (516)
T ss_pred HhhHhhhhhhhh----hhhhhhHHHHH
Confidence 999998875332 44444444444
No 24
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=71.05 E-value=4.9 Score=33.75 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=28.4
Q ss_pred cChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhhc
Q 008584 70 ITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFY 110 (560)
Q Consensus 70 it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~ 110 (560)
++...+..|..||.||+|.. |++.|+.++...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~-------L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKG-------LLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HH-------HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHcchH-------HHHHHHHHHHHHhc
Confidence 47789999999999999995 99999999988763
No 25
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=67.64 E-value=14 Score=40.95 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=59.1
Q ss_pred EEEEecCceeEechHHHHhhcC--HHHHHhhcc-----cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYS--ERLKKIIKQ-----ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILH 79 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S--~yfr~lf~e-----~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~ 79 (560)
|-+.|+| +.|.--+.-|+... .+|.+|+++ ..+.-..+-| -.|+.|..+++|.-| |++++..--...|+
T Consensus 13 V~lNVGG-riF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID--RDPdlFaviLn~LRT-g~L~~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGG-RIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID--RDPDLFAVILNLLRT-GDLDASGVFPERLL 88 (465)
T ss_pred EEEecCc-eEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec--CCchHHHHHHHHHhc-CCCCCccCchhhhh
Confidence 5678975 89999999988766 799999972 2222222323 236999999999999 99999665455555
Q ss_pred H-HHhHhcccc
Q 008584 80 C-CSIFLGMTD 89 (560)
Q Consensus 80 c-AAe~LqMte 89 (560)
- =|.|.+++.
T Consensus 89 hdEA~fYGl~~ 99 (465)
T KOG2714|consen 89 HDEAMFYGLTP 99 (465)
T ss_pred hhhhhhcCcHH
Confidence 5 899999996
No 26
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=65.39 E-value=9 Score=32.82 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHh
Q 008584 523 LNLQTMQRRVRELEEVCREMKGHMH 547 (560)
Q Consensus 523 ~~l~~m~~rv~eLEkec~~mk~~~~ 547 (560)
.||+.||..|.+||..+..||+..+
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999997554
No 27
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=64.44 E-value=26 Score=32.98 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=64.0
Q ss_pred cEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEE--ecCCCCCHHHHHHHHHHHhcCCccc--------------
Q 008584 6 DIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIE--IKGFPGGPTGFELVSRFCYNNGRIK-------------- 69 (560)
Q Consensus 6 Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~--L~d~pgG~e~Felv~~FcYg~g~i~-------------- 69 (560)
-|.+.-.+|+.|.+.+. .|-+|-.++.|+.......+. +..+- +..|..+.+||-- -+=.
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~p~p~pnVr--Ssvl~kv~ew~eh-h~~s~sede~d~~~rks~ 78 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCDSTACNYPIPAPNVR--SSVLMKVQEWMEH-HTSSLSEDENDLEIRKSK 78 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhccccccCCCCcccchh--HHHHHHHHHHHHh-ccccCCCccChHhhhccC
Confidence 35555434589999877 689999999998865544333 34444 6899999999953 1111
Q ss_pred -----------cChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhh
Q 008584 70 -----------ITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMF 109 (560)
Q Consensus 70 -----------it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v 109 (560)
+...-...+.-||.||++.. |++.||+-..+.+
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikp-------LLd~gCKivaemi 122 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKP-------LLDLGCKIVAEMI 122 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchH-------HHHHHHHHHHHHH
Confidence 12234556677889999886 8888888887766
No 28
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=59.00 E-value=11 Score=40.24 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHhhhcc
Q 008584 522 RLNLQTMQRRVRELEEVCREMKGHMHKLVR 551 (560)
Q Consensus 522 r~~l~~m~~rv~eLEkec~~mk~~~~k~~~ 551 (560)
|.||+.+..|+.||||+...++++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999998876
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=58.63 E-value=3.3 Score=45.03 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=41.6
Q ss_pred ccEEEEecCceeEechHHHHhhcCHHHHHhhc-cc-CCCeE-EecCCCCCHHHHHHHHHHHhcC
Q 008584 5 CDIQIHVNGHQTFFLNEQTITKYSERLKKIIK-QE-SRRVI-EIKGFPGGPTGFELVSRFCYNN 65 (560)
Q Consensus 5 ~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~-e~-~~~~i-~L~d~pgG~e~Felv~~FcYg~ 65 (560)
.|++..+..|..|-+||+.|+++|.||..-+. .- .+.+| ...-+| .+|+-.++|.|-|
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~---~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVIL---SAFSPFLKQLYLN 210 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhH---hhhhHHHHHHHHh
Confidence 37777665568899999999999988754333 32 23345 334454 8999999999983
No 30
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=56.51 E-value=13 Score=24.81 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=15.4
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 008584 524 NLQTMQRRVRELEEVCRE 541 (560)
Q Consensus 524 ~l~~m~~rv~eLEkec~~ 541 (560)
||++.|.|+++||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 689999999999987653
No 31
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=52.37 E-value=8.5 Score=33.80 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=30.9
Q ss_pred cCCcccccCcchhHHHHHHHhhCCCCCHHhhhhhcccccccC
Q 008584 399 LPDSARECFDGVYRAVDIYLESHPTLSFKERSELCRCLNYKK 440 (560)
Q Consensus 399 lPd~aR~~~DgLYrAIDiYLk~Hp~lse~Er~~lCr~ldcqK 440 (560)
+|++.......+|+|+..||.+....+. .|-++++.-|-+.
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~ 70 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKN 70 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCc
Confidence 3444446678999999999999987665 7777777766655
No 32
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=49.70 E-value=33 Score=27.91 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=28.2
Q ss_pred ccchhHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 008584 514 FSGENENVRLNLQTMQRRVRELEEVCREMKGH 545 (560)
Q Consensus 514 ~~ren~~Lr~~l~~m~~rv~eLEkec~~mk~~ 545 (560)
++.|-+.||..+.....|+.+||.|+.-.|+-
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678999999999999999999999999875
No 33
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=43.02 E-value=33 Score=32.49 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=28.4
Q ss_pred cccchhHHHHHHHHHHHhHHHHHHHHHHHHHhHHhh
Q 008584 513 RFSGENENVRLNLQTMQRRVRELEEVCREMKGHMHK 548 (560)
Q Consensus 513 ~~~ren~~Lr~~l~~m~~rv~eLEkec~~mk~~~~k 548 (560)
+++.|++.|-.+++.|+.||.|||.-+++....|+.
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 457788888888888999999998888887766554
No 34
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=42.51 E-value=16 Score=28.24 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=16.0
Q ss_pred HHHHhHHHHHHHHHHHHHh
Q 008584 526 QTMQRRVRELEEVCREMKG 544 (560)
Q Consensus 526 ~~m~~rv~eLEkec~~mk~ 544 (560)
+..+.||.|||.|....|+
T Consensus 14 e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred chheeeHHHHHHHHHHHHH
Confidence 4678999999999988774
No 35
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=42.05 E-value=50 Score=35.28 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=56.5
Q ss_pred EEEEecCceeEechHHHHhhcCH-HHHHhhcc-------cCCCeEEe-cCCCCCHHHHHHHHHHHhcCCccccCh-hhHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSE-RLKKIIKQ-------ESRRVIEI-KGFPGGPTGFELVSRFCYNNGRIKITV-SNVS 76 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~-yfr~lf~e-------~~~~~i~L-~d~pgG~e~Felv~~FcYg~g~i~it~-~NV~ 76 (560)
++..|++ ..|..-+++|.+.-. -+-.||.. +...+.+. .|+. ...|..+++|--+ |.|.--+ -.|-
T Consensus 98 ~t~lvd~-~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYks-G~iRCP~~vSvp 173 (438)
T KOG3840|consen 98 VCLLVDQ-TRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQS-GTMRCPSSVSVS 173 (438)
T ss_pred eEEEeee-EEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhc-CceeCCCCCchH
Confidence 5667764 789888888866543 23445541 12235555 4664 7999999999888 8886544 3789
Q ss_pred HHHHHHhHhccccc
Q 008584 77 ILHCCSIFLGMTDT 90 (560)
Q Consensus 77 ~L~cAAe~LqMte~ 90 (560)
.|+.|-+||-++=+
T Consensus 174 ELrEACDYLlipF~ 187 (438)
T KOG3840|consen 174 ELREACDYLLVPFN 187 (438)
T ss_pred HHHhhcceEEeecc
Confidence 99999999998744
No 36
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=41.19 E-value=94 Score=32.03 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=63.0
Q ss_pred EEEEecCceeEechHHHHhhcCH--HHHHhhcccC-------CCeEEecCCCCCHHHHHHHHHHHhcCCccc-cChhhHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSE--RLKKIIKQES-------RRVIEIKGFPGGPTGFELVSRFCYNNGRIK-ITVSNVS 76 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~--yfr~lf~e~~-------~~~i~L~d~pgG~e~Felv~~FcYg~g~i~-it~~NV~ 76 (560)
|.+.++| +.|.--..-|.-+=| .+-+||.... +.-+-| |=. |.-||-++.|.-. |.|. .+.-|+.
T Consensus 11 vrlnigG-k~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRs--p~yFepIlNyLr~-Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 11 VRLNIGG-KKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRS--PKYFEPILNYLRD-GQIPSLSDIDCL 85 (302)
T ss_pred heeecCC-eEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccC--chhhHHHHHHHhc-CceeecCCccHH
Confidence 5678875 889888877776643 6888998321 223433 333 5899999999998 8875 5556999
Q ss_pred HHHHHHhHhccccccCCcchHHHHHHH
Q 008584 77 ILHCCSIFLGMTDTVSSTNNLLQQTES 103 (560)
Q Consensus 77 ~L~cAAe~LqMte~~~~~~NL~~~~e~ 103 (560)
.++.+|.|+|+-. |++..|.
T Consensus 86 gvLeeArff~i~s-------L~~hle~ 105 (302)
T KOG1665|consen 86 GVLEEARFFQILS-------LKDHLED 105 (302)
T ss_pred HHHHHhhHHhhHh-------HHhHHhh
Confidence 9999999999985 7776665
No 37
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.15 E-value=29 Score=39.96 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=101.2
Q ss_pred cchHHHHHHHHHHHhcCCCCCc-ccchhhHHHHHHhhhhhhhhccCCCCCChhHHHHHHHhcCCcccccC--cchhHHHH
Q 008584 339 YDVNLVIRLIRIFVNSNSSNSD-LVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSARECF--DGVYRAVD 415 (560)
Q Consensus 339 yDvd~V~ril~~Fl~~~~~~~~-~~~~~~l~~VakLvD~YLaEiA~D~nL~~~KF~~Lae~lPd~aR~~~--DgLYrAID 415 (560)
.|.+-|.+++...=...--..+ .+.+....|+|.-++.-|. -||..|+++.=+.+-...+-+....| |.|=-|+.
T Consensus 275 ~~~~eVve~I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~k 352 (652)
T COG2433 275 IDRSEVVEFISELGKPVVVATDVTPAPETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYK 352 (652)
T ss_pred CCHHHHHHHHHHcCCceEEEccCCCChHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Confidence 6776666665443110000001 1345678888888887764 79999999998888888888888877 88999999
Q ss_pred HHHhhCCCCCHHhhhhhcccccccCCCHHHhHHHHhCCCCCchhHHHHHHHhhcCCCCccccccccccccccCCCCCCcc
Q 008584 416 IYLESHPTLSFKERSELCRCLNYKKLTLEASKYLAKNPKIPPNVAIQALMSQHSKLPTKDEFSYHQSDTKRKIDPSTKNS 495 (560)
Q Consensus 416 iYLk~Hp~lse~Er~~lCr~ldcqKLS~EAc~HAaQNerlPlr~vVQvLf~eQl~lr~~~~~~~~~~~~~~~~~~~~~~~ 495 (560)
.|+.--|.|..-||+-==-.+.-+-. .+-.+- =.-.|+.-++-...-+ -+=|. ..+.. .....
T Consensus 353 AY~~yk~kl~~vEr~~~~~g~~~d~~--rika~V--IrG~~l~eal~~~~e~-~~p~e--~~~~~----------~~e~~ 415 (652)
T COG2433 353 AYLAYKPKLEKVERKLPELGIWKDVE--RIKALV--IRGYPLAEALSKVKEE-ERPRE--KEGTE----------EEERR 415 (652)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHH--HHHHHe--ecCCcHHHHHHHHHhh-hcccc--ccccc----------ccccc
Confidence 99987777776666421111100000 000000 0011221111111100 00000 00000 00000
Q ss_pred cccccCCCCCCccCccccccchhHHHHHHHHHHHhHHHHHHHHHHHHHhHHh
Q 008584 496 QVVLYNGAGAGVIDDTERFSGENENVRLNLQTMQRRVRELEEVCREMKGHMH 547 (560)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~ren~~Lr~~l~~m~~rv~eLEkec~~mk~~~~ 547 (560)
.+..+...-.......+++..||++|+.+++.|+.-+++||.+|..|+.+++
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000112357889999999999999999999999999987766
No 38
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=38.15 E-value=20 Score=42.77 Aligned_cols=75 Identities=28% Similarity=0.468 Sum_probs=53.8
Q ss_pred cccCCCCCCCCCCcccchHHHHHHHHHHHhcCCCCCcccchhhHHHHHHhhhhhhhhccCCCCCChhHHHHHHHhcCCcc
Q 008584 324 LVSGQGYGNGHDRGVYDVNLVIRLIRIFVNSNSSNSDLVGSQKLKKFGRLIDKYLGEISPDQKLTVPKFLGVAESLPDSA 403 (560)
Q Consensus 324 LiP~~~y~~~~~~~~yDvd~V~ril~~Fl~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~KF~~Lae~lPd~a 403 (560)
+||...|| +.+.+.-+++||-..- + +|.|=.+..+|..+.+..|..+++.+|.++
T Consensus 252 iLP~Lt~G--------~~e~m~~Lv~~F~p~l----------------~-f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~ 306 (802)
T PF13764_consen 252 ILPFLTYG--------NEEKMDALVEHFKPYL----------------D-FDKFDEEHSPDEQFKLECFCEIAEGIPNNS 306 (802)
T ss_pred HhhHHhcC--------CHHHHHHHHHHHHHhc----------------C-hhhcccccCchHHHHHHHHHHHHhcCCCCC
Confidence 36766555 6778888999984221 1 566666777888899999999999999886
Q ss_pred --c-----ccCcchhH-HHHHHHhh-CCCC
Q 008584 404 --R-----ECFDGVYR-AVDIYLES-HPTL 424 (560)
Q Consensus 404 --R-----~~~DgLYr-AIDiYLk~-Hp~l 424 (560)
. ..+=|++. |++ ||+. +|..
T Consensus 307 ~G~~LK~~Il~~GIv~~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 307 NGNRLKDKILESGIVQDAID-YLLKHFPSL 335 (802)
T ss_pred chHHHHHHHHHhhHHHHHHH-HHHHhCccc
Confidence 2 24556776 888 6655 4765
No 39
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=36.06 E-value=47 Score=35.66 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=26.0
Q ss_pred cCccccccchhHHHHHHHHHHHhHHHHHHHHHH
Q 008584 508 IDDTERFSGENENVRLNLQTMQRRVRELEEVCR 540 (560)
Q Consensus 508 ~~~~~~~~ren~~Lr~~l~~m~~rv~eLEkec~ 540 (560)
++....++.||..||.|.+..+.+|..||.|..
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 343445788999999999999999999986655
No 40
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=30.11 E-value=36 Score=27.58 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=16.0
Q ss_pred cchhHHHHHHHhhCCCCCH
Q 008584 408 DGVYRAVDIYLESHPTLSF 426 (560)
Q Consensus 408 DgLYrAIDiYLk~Hp~lse 426 (560)
--||.|+.-||+.||+-.+
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3589999999999997654
No 41
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.67 E-value=51 Score=33.99 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=12.4
Q ss_pred HHHHhHHHHHHHHHHHHHhHHhh
Q 008584 526 QTMQRRVRELEEVCREMKGHMHK 548 (560)
Q Consensus 526 ~~m~~rv~eLEkec~~mk~~~~k 548 (560)
||.|.|+.|||+|....++++.+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~ 111 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISS 111 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555555444433
No 42
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.25 E-value=83 Score=30.58 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=20.4
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 008584 515 SGENENVRLNLQTMQRRVRELEEVCREMKGHM 546 (560)
Q Consensus 515 ~ren~~Lr~~l~~m~~rv~eLEkec~~mk~~~ 546 (560)
..||+.|+.++...+.++.+||++-...+++.
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777776666666654443
No 43
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.66 E-value=63 Score=34.18 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhcc
Q 008584 516 GENENVRLNLQTMQRRVRELEEVCREMKGHMHKLVR 551 (560)
Q Consensus 516 ren~~Lr~~l~~m~~rv~eLEkec~~mk~~~~k~~~ 551 (560)
.|-+.|-..=++.|.++.+||||...||+-|..+.+
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444566778999999999999998876654
No 44
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=28.29 E-value=1e+02 Score=23.99 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhc
Q 008584 519 ENVRLNLQTMQRRVRELEEVCREMKGHMHKLV 550 (560)
Q Consensus 519 ~~Lr~~l~~m~~rv~eLEkec~~mk~~~~k~~ 550 (560)
+.-|..++.|..+|.+|+.+...+++++..|.
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456688888999999999999988887664
No 45
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=26.41 E-value=34 Score=34.47 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=26.5
Q ss_pred HHHhcC--CcccccCcchhHHHHHHHhhCCCCCHHhh
Q 008584 395 VAESLP--DSARECFDGVYRAVDIYLESHPTLSFKER 429 (560)
Q Consensus 395 Lae~lP--d~aR~~~DgLYrAIDiYLk~Hp~lse~Er 429 (560)
+.+-+| +..+..-+|=|+||..|||.||.==|.++
T Consensus 182 ~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~ 218 (237)
T COG3510 182 NVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDT 218 (237)
T ss_pred cccCCCCcccchhcCCChHHHHHHHHHhCCcccccch
Confidence 345566 56666799999999999999996555444
No 46
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.52 E-value=42 Score=34.37 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=58.3
Q ss_pred eeEechHHHHhhcCHHHHHhhcc----cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHH---HHHHHHhHhcc
Q 008584 15 QTFFLNEQTITKYSERLKKIIKQ----ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVS---ILHCCSIFLGM 87 (560)
Q Consensus 15 ~~F~lHK~~Las~S~yfr~lf~e----~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~---~L~cAAe~LqM 87 (560)
..+..|+.+++++|+-|+.|+.. .....+.+.+.. ++.|+.+..|.|. ..-.-+..++- ++.++|.-.+-
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~-~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVL-PSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEe-ccchHHHHHhhcCChhhhhcccccc
Confidence 35999999999999999998872 112234555554 5888888999998 43333334443 56666655554
Q ss_pred ccccCCcchHHHHHHHHHHhhh
Q 008584 88 TDTVSSTNNLLQQTESFLEGMF 109 (560)
Q Consensus 88 te~~~~~~NL~~~~e~FL~~~v 109 (560)
. .|...|...|.+.+
T Consensus 187 ~-------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R-------HLKLACMPVLLSLI 201 (297)
T ss_pred H-------HHHHHHHHHHHHHH
Confidence 4 48888888887765
No 47
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=24.16 E-value=1.4e+02 Score=22.68 Aligned_cols=23 Identities=13% Similarity=0.445 Sum_probs=10.6
Q ss_pred HHHHHHhHH-HHHHHHHHHHHhHH
Q 008584 524 NLQTMQRRV-RELEEVCREMKGHM 546 (560)
Q Consensus 524 ~l~~m~~rv-~eLEkec~~mk~~~ 546 (560)
+|++|+.-+ .|.-||...||++|
T Consensus 4 dle~~KqEIL~EvrkEl~K~K~EI 27 (40)
T PF08776_consen 4 DLERLKQEILEEVRKELQKVKEEI 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 24445555555443
No 48
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.86 E-value=50 Score=28.31 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.3
Q ss_pred cchhHHHHHHHhhCCC
Q 008584 408 DGVYRAVDIYLESHPT 423 (560)
Q Consensus 408 DgLYrAIDiYLk~Hp~ 423 (560)
=.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999974
No 49
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=20.60 E-value=64 Score=26.40 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=18.6
Q ss_pred CcchhHHHHHHHhhCCCCCHHhhhhh
Q 008584 407 FDGVYRAVDIYLESHPTLSFKERSEL 432 (560)
Q Consensus 407 ~DgLYrAIDiYLk~Hp~lse~Er~~l 432 (560)
.|+.|.+ -+.+|.+||++|-..+
T Consensus 10 pD~fY~~---Li~aH~gLs~e~S~~l 32 (60)
T PF10932_consen 10 PDDFYEA---LIEAHRGLSDEQSAAL 32 (60)
T ss_pred hhHHHHH---HHHHHhCCCHHHHHHH
Confidence 3899998 5889999999985543
Done!