Query 008584
Match_columns 560
No_of_seqs 250 out of 735
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3n_A Kelch-like protein 11; 99.8 3.5E-20 1.2E-24 186.1 12.4 219 2-310 30-264 (279)
2 3b84_A Zinc finger and BTB dom 99.8 2.5E-20 8.6E-25 165.0 8.5 96 2-108 22-117 (119)
3 2vpk_A Myoneurin; transcriptio 99.8 5.3E-20 1.8E-24 161.6 10.5 95 2-107 20-116 (116)
4 2vkp_A BTB/POZ domain-containi 99.8 9.4E-20 3.2E-24 157.6 11.1 97 2-109 6-109 (109)
5 1buo_A POZ domain, protein (pr 99.8 1.2E-19 4.1E-24 160.8 11.4 95 2-108 26-120 (121)
6 3htm_A Speckle-type POZ protei 99.8 2.8E-19 9.4E-24 165.9 13.5 123 2-144 32-161 (172)
7 3hve_A Gigaxonin; ubiquitin, c 99.8 2.5E-19 8.5E-24 177.5 13.9 217 2-309 29-256 (256)
8 2yy9_A Zinc finger and BTB dom 99.8 4.6E-20 1.6E-24 167.1 7.4 98 2-110 23-120 (135)
9 2if5_A Zinc finger and BTB dom 99.8 1.9E-19 6.3E-24 158.8 10.7 94 2-106 23-120 (120)
10 3ga1_A Nucleus accumbens-assoc 99.8 7.3E-20 2.5E-24 164.0 7.1 96 2-108 31-127 (129)
11 4eoz_A Speckle-type POZ protei 99.8 9.9E-20 3.4E-24 164.4 7.6 114 2-135 23-140 (145)
12 2z8h_A Transcription regulator 99.8 2.7E-19 9.3E-24 162.2 10.4 100 2-112 34-136 (138)
13 1r29_A B-cell lymphoma 6 prote 99.8 3.8E-19 1.3E-23 158.5 10.9 96 2-108 27-126 (127)
14 2q81_A MIZ-1 protein; BTB/POZ 99.8 1.5E-19 5.1E-24 160.0 7.9 93 2-106 25-117 (119)
15 2ppi_A Gigaxonin; BTB domain, 99.8 5.3E-19 1.8E-23 162.1 9.0 94 2-106 45-144 (144)
16 3m5b_A Zinc finger and BTB dom 99.8 4.3E-19 1.5E-23 158.2 6.8 90 2-107 28-117 (119)
17 3ohu_A Transcription regulator 99.8 2.7E-19 9.1E-24 159.1 5.4 93 2-105 30-125 (125)
18 2ihc_A Transcription regulator 99.8 4.7E-19 1.6E-23 157.9 5.6 94 2-106 27-123 (124)
19 3hqi_A Speckle-type POZ protei 99.7 1.7E-17 5.9E-22 168.6 12.5 124 2-145 172-302 (312)
20 3fkc_A Transcriptional regulat 99.7 3.1E-17 1E-21 145.0 9.9 83 2-89 29-112 (116)
21 2ast_A S-phase kinase-associat 99.3 3.1E-12 1E-16 119.6 9.7 94 7-111 3-128 (159)
22 4ajy_C Transcription elongatio 99.2 7.1E-11 2.4E-15 101.7 9.3 78 7-87 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.1 2.3E-10 7.7E-15 105.1 8.8 93 7-110 4-122 (141)
24 2p1m_A SKP1-like protein 1A; F 98.8 6.4E-10 2.2E-14 104.1 1.3 93 7-110 6-126 (160)
25 3v7d_A Suppressor of kinetocho 98.3 2.3E-06 7.9E-11 80.8 10.2 96 5-110 7-134 (169)
26 2fnj_C Transcription elongatio 98.2 2.3E-06 7.9E-11 73.5 8.0 78 7-87 3-96 (96)
27 1hv2_A Elongin C, ELC1; protei 98.2 4.5E-06 1.5E-10 72.1 8.8 79 6-87 5-99 (99)
28 1vcb_B Protein (elongin C); tu 97.7 8.4E-05 2.9E-09 65.7 7.8 78 7-87 19-112 (112)
29 3drz_A BTB/POZ domain-containi 97.5 0.0007 2.4E-08 59.0 10.2 89 7-107 8-106 (107)
30 3drx_A BTB/POZ domain-containi 94.9 0.045 1.5E-06 53.1 7.0 89 7-107 14-112 (202)
31 3kvt_A Potassium channel prote 92.0 0.21 7.3E-06 44.0 5.6 81 5-90 5-92 (115)
32 1nn7_A Potassium channel KV4.2 90.9 0.21 7.2E-06 43.2 4.4 79 7-90 2-86 (105)
33 1s1g_A Potassium voltage-gated 90.6 0.3 1E-05 43.6 5.3 79 7-90 15-99 (124)
34 1t1d_A Protein (potassium chan 89.9 0.76 2.6E-05 39.4 7.0 79 7-89 3-88 (100)
35 2nz0_B Potassium voltage-gated 88.6 0.34 1.2E-05 44.2 4.1 77 6-90 36-121 (140)
36 3vmx_A Voltage-gated hydrogen 84.9 1 3.5E-05 33.9 4.1 34 518-551 6-39 (48)
37 2yy0_A C-MYC-binding protein; 78.0 2.9 0.0001 32.0 4.6 34 515-548 18-51 (53)
38 1pd7_B MAD1; PAH2, SIN3, eukar 72.7 1.2 4.3E-05 29.2 1.1 17 73-89 3-19 (26)
39 3a2a_A Voltage-gated hydrogen 71.8 5 0.00017 31.0 4.4 33 519-551 14-46 (58)
40 1deb_A APC protein, adenomatou 70.0 5.5 0.00019 30.2 4.2 38 513-550 14-51 (54)
41 3vp9_A General transcriptional 57.8 9.2 0.00031 32.5 3.9 25 523-547 50-74 (92)
42 3b0b_C CENP-X, centromere prot 50.1 15 0.0005 30.5 3.9 42 337-381 7-48 (81)
43 1vjh_A BET V I allergen family 46.7 12 0.00041 32.6 3.0 33 380-423 90-122 (122)
44 2eqx_A Kelch repeat and BTB do 36.6 29 0.00098 29.1 3.8 37 66-109 4-40 (105)
45 1dip_A Delta-sleep-inducing pe 35.7 39 0.0013 27.6 4.1 32 514-545 13-44 (78)
46 3htm_A Speckle-type POZ protei 35.5 43 0.0015 29.6 5.0 46 53-109 119-164 (172)
47 2r9r_B Paddle chimera voltage 28.6 63 0.0021 34.9 5.7 80 7-90 54-140 (514)
48 4dra_E Centromere protein X; D 27.9 37 0.0013 28.3 2.9 41 338-381 12-52 (84)
49 2yy0_A C-MYC-binding protein; 27.3 38 0.0013 25.8 2.6 29 511-539 21-49 (53)
50 1ci6_A Transcription factor AT 24.6 89 0.003 24.3 4.4 33 515-547 29-61 (63)
51 2xv5_A Lamin-A/C; structural p 23.7 85 0.0029 25.4 4.2 29 521-549 3-31 (74)
52 1use_A VAsp, vasodilator-stimu 21.9 97 0.0033 22.9 3.8 13 534-546 19-31 (45)
53 2wt7_B Transcription factor MA 21.6 1E+02 0.0036 25.9 4.5 36 514-549 53-88 (90)
54 1go4_E MAD1 (mitotic arrest de 20.4 86 0.0029 26.9 3.8 22 525-546 14-35 (100)
No 1
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.82 E-value=3.5e-20 Score=186.11 Aligned_cols=219 Identities=14% Similarity=0.181 Sum_probs=156.8
Q ss_pred CCCccEEEEec--CceeEechHHHHhhcCHHHHHhhc----ccCCCeEEec------CCCCCHHHHHHHHHHHhcCCccc
Q 008584 2 SQLCDIQIHVN--GHQTFFLNEQTITKYSERLKKIIK----QESRRVIEIK------GFPGGPTGFELVSRFCYNNGRIK 69 (560)
Q Consensus 2 ~~l~Dv~v~V~--g~~~F~lHK~~Las~S~yfr~lf~----e~~~~~i~L~------d~pgG~e~Felv~~FcYg~g~i~ 69 (560)
..+|||+|.|+ ++..|++||.+|+++|+||++||+ |+....|+|+ +++ +++|+.+++|+|| |++.
T Consensus 30 ~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~--~~~f~~ll~~~Yt-g~~~ 106 (279)
T 3i3n_A 30 GLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPE--PDTVEAVIEYMYT-GRIR 106 (279)
T ss_dssp TTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSC--HHHHHHHHHHHHH-SEEE
T ss_pred CCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCC--HHHHHHHHHhhCc-CCcc
Confidence 36899999997 148999999999999999999998 3445689998 555 8999999999999 9999
Q ss_pred cChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhC---cHHHHHHHHHHH
Q 008584 70 ITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCG---LVDKFICALLAK 146 (560)
Q Consensus 70 it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~---iv~rcidsla~k 146 (560)
++.+||..|+.||++|+|++ |++.|++||.+.+.. .+|..++.+|+.++ +.++|.+-|+..
T Consensus 107 i~~~~v~~ll~~A~~l~i~~-------L~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~ 170 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLLIR-------LKEFCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMIRRN 170 (279)
T ss_dssp EETTTHHHHHHHHHHTTCHH-------HHHHHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHCcHH-------HHHHHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999996 999999999998854 57888888888887 344555555432
Q ss_pred HccCCcccccccCCCCCCCCCCCCCccccccccCCCCCCCCcccCCCCCCCCCCCCCchhhhhcccChHHHHHHHHHHhh
Q 008584 147 IAQHSDLSLIIASPSTPSSSSSPETSYGCRFSCTSTKTTPESIIKPSCSSSPSPSKAWWFDDLTILSPVIIEKISKGLGA 226 (560)
Q Consensus 147 a~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~~~rvi~am~~ 226 (560)
... . +--++...|+.+....++..=.
T Consensus 171 f~~---------------------------v--------------------------~~~~~f~~L~~~~l~~lL~~d~- 196 (279)
T 3i3n_A 171 FHK---------------------------V--------------------------IQDEEFYTLPFHLIRDWLSDLE- 196 (279)
T ss_dssp HHH---------------------------H--------------------------TTSSGGGGSCHHHHHHHHTCSS-
T ss_pred HHH---------------------------H--------------------------hcCcChhcCCHHHHHHHhcCcC-
Confidence 210 0 0013445678887777775321
Q ss_pred hcCCCC-hhhHHHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHhhccccCCCCccchhHHHHHHHHHHhcCCCHHHHH
Q 008584 227 YGAENN-SLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGISKDCRA 305 (560)
Q Consensus 227 ~~~~~~-~~~i~~~l~~Ya~~~l~~~~~~~~~~~~~~~r~llE~iv~lllp~~k~~~s~~fLf~lLr~a~~l~as~~cr~ 305 (560)
-.+. ...+-.+++.|++...+ .++..+..+...+ -=..+|..+|..+++..-.+..++.|+.
T Consensus 197 --L~v~sE~~vf~av~~W~~~~~~------------~r~~~~~~ll~~V---Rf~l~~~~~L~~~v~~~~l~~~~~~c~~ 259 (279)
T 3i3n_A 197 --ITVDSEEVLFETVLKWVQRNAE------------ERERYFEELFKLL---RLSQMKPTYLTRHVKPERLVANNEVCVK 259 (279)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTHH------------HHTTTHHHHHTTS---CGGGSCHHHHHHTTTTSHHHHTCHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHcCHH------------HHHHHHHHHHHhc---CCCCCCHHHHHHHhhccchhcCCHHHHH
Confidence 2333 44566666666664321 1223334333321 1145789999998888878888999988
Q ss_pred HHHHH
Q 008584 306 GLENM 310 (560)
Q Consensus 306 ~LE~r 310 (560)
-+..-
T Consensus 260 ~l~ea 264 (279)
T 3i3n_A 260 LVADA 264 (279)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 2
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=164.97 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=87.7
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCC 81 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~cA 81 (560)
..+|||+|.|+| ++|++||.+|+++|+||++||.......|.|++++ +++|+.+++|+|| |++.++.+||..|+.|
T Consensus 22 ~~~~Dv~l~v~~-~~f~aHk~vLaa~S~yF~~~f~~~~~~~i~l~~~~--~~~f~~ll~~iYt-g~~~~~~~~v~~ll~~ 97 (119)
T 3b84_A 22 GQYCDATLDVGG-LVFKAHWSVLACCSHFFQSLYGDGSGGSVVLPAGF--AEIFGLLLDFFYT-GHLALTSGNRDQVLLA 97 (119)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHCHHHHHHHTTTTCCCEEECGGG--HHHHHHHHHHHHH-SCCCCCTTTHHHHHHH
T ss_pred CCCcceEEEECC-EEEEeeHHHHhhcCHHHHHHHCCCCCCeEEeCCCC--HHHHHHHHHHHcC-CCCccCHHHHHHHHHH
Confidence 468999999985 89999999999999999999997666789999998 7999999999999 9999999999999999
Q ss_pred HhHhccccccCCcchHHHHHHHHHHhh
Q 008584 82 SIFLGMTDTVSSTNNLLQQTESFLEGM 108 (560)
Q Consensus 82 Ae~LqMte~~~~~~NL~~~~e~FL~~~ 108 (560)
|++|+|++ |++.|++||.+.
T Consensus 98 A~~~~i~~-------L~~~C~~~l~~~ 117 (119)
T 3b84_A 98 ARELRVPE-------AVELCQSFKPKT 117 (119)
T ss_dssp HHHTTCHH-------HHHHHHHCC---
T ss_pred HHHhCcHH-------HHHHHHHHHHHc
Confidence 99999996 999999999764
No 3
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.81 E-value=5.3e-20 Score=161.56 Aligned_cols=95 Identities=20% Similarity=0.384 Sum_probs=87.5
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEec--CCCCCHHHHHHHHHHHhcCCccccChhhHHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIK--GFPGGPTGFELVSRFCYNNGRIKITVSNVSILH 79 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~--d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~ 79 (560)
..+|||+|.|+| ..|++||.+|+++|+||++||.......|.|+ +++ +++|+.+++|+|| |++.++++||..|+
T Consensus 20 ~~~~Dv~l~v~~-~~~~aHk~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~--~~~f~~ll~~~Yt-~~~~~~~~~v~~ll 95 (116)
T 2vpk_A 20 GFLCDCTIVIGE-FQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVK--ADGFQKLLEFIYT-GTLNLDSWNVKEIH 95 (116)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHCHHHHHHHTTCCCSCEECCTTTCC--HHHHHHHHHHHHH-SCCCCCTTTHHHHH
T ss_pred CCCCcEEEEECC-EEEeccHHHHhhcCHHHHHHHcCCCCCeEEeecCCCC--HHHHHHHHHHHcC-CCcccCHHHHHHHH
Confidence 468999999985 89999999999999999999997666688888 888 7999999999999 99999999999999
Q ss_pred HHHhHhccccccCCcchHHHHHHHHHHh
Q 008584 80 CCSIFLGMTDTVSSTNNLLQQTESFLEG 107 (560)
Q Consensus 80 cAAe~LqMte~~~~~~NL~~~~e~FL~~ 107 (560)
.||++|+|++ |++.|++||.+
T Consensus 96 ~~A~~~~i~~-------L~~~C~~~l~~ 116 (116)
T 2vpk_A 96 QAADYLKVEE-------VVTKCKIKMED 116 (116)
T ss_dssp HHHHHTTCHH-------HHHHHHHHHC-
T ss_pred HHHHHhCCHH-------HHHHHHHHHhC
Confidence 9999999996 99999999963
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.81 E-value=9.4e-20 Score=157.63 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=88.2
Q ss_pred CCCccEEEEecCc---eeEechHHHHhhcCHHHHHhhcc----cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhh
Q 008584 2 SQLCDIQIHVNGH---QTFFLNEQTITKYSERLKKIIKQ----ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSN 74 (560)
Q Consensus 2 ~~l~Dv~v~V~g~---~~F~lHK~~Las~S~yfr~lf~e----~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~N 74 (560)
..+|||+|.|+|+ ..|++||.+|+++|+||++||.. +. ..|.|++++ +++|+.+++|+|| |++.++++|
T Consensus 6 ~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~--~~~f~~~l~~iYt-~~~~~~~~~ 81 (109)
T 2vkp_A 6 ELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVE--PAAFLILLKYMYS-DEIDLEADT 81 (109)
T ss_dssp CTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSC--HHHHHHHHHHHHH-CCCCCCTTT
T ss_pred CCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCC--HHHHHHHHHHHcC-CCccCCHHH
Confidence 4789999999753 79999999999999999999983 33 689999998 7999999999999 999999999
Q ss_pred HHHHHHHHhHhccccccCCcchHHHHHHHHHHhhh
Q 008584 75 VSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMF 109 (560)
Q Consensus 75 V~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v 109 (560)
|..|+.+|++++|++ |.+.|+.||.+.+
T Consensus 82 ~~~ll~~A~~~~~~~-------L~~~c~~~l~~~l 109 (109)
T 2vkp_A 82 VLATLYAAKKYIVPA-------LAKACVNFLETSL 109 (109)
T ss_dssp HHHHHHHHHHTTCHH-------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcHH-------HHHHHHHHHHhhC
Confidence 999999999999996 9999999998753
No 5
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.80 E-value=1.2e-19 Score=160.84 Aligned_cols=95 Identities=18% Similarity=0.350 Sum_probs=88.3
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCC 81 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~cA 81 (560)
..+|||+|.|+| ++|++||.+|+++|+||++||... ...|.|++++ +++|+.+++|+|| |++.++++|+..|+.|
T Consensus 26 ~~~~Dv~l~v~~-~~f~aHk~vLaa~S~yF~~~f~~~-~~~i~l~~~~--~~~f~~ll~~~Yt-g~~~~~~~~~~~ll~~ 100 (121)
T 1buo_A 26 GTLCDVVIMVDS-QEFHAHRTVLACTSKMFEILFHRN-SQHYTLDFLS--PKTFQQILEYAYT-ATLQAKAEDLDDLLYA 100 (121)
T ss_dssp TTTCCEEEEESS-CEEEECHHHHHHHCHHHHHHTTSC-CSEEEECSSC--HHHHHHHHHHHHH-SCCCCCGGGHHHHHHH
T ss_pred CCCCCEEEEECC-EEEehhHHHHhhcCHHHHHHHcCC-CcEEEeCCCC--HHHHHHHHHhhcC-CCcCCCHHHHHHHHHH
Confidence 368999999985 899999999999999999999854 4589999998 7999999999999 9999999999999999
Q ss_pred HhHhccccccCCcchHHHHHHHHHHhh
Q 008584 82 SIFLGMTDTVSSTNNLLQQTESFLEGM 108 (560)
Q Consensus 82 Ae~LqMte~~~~~~NL~~~~e~FL~~~ 108 (560)
|++|+|++ |.+.|++||.+.
T Consensus 101 A~~~~i~~-------L~~~c~~~l~~~ 120 (121)
T 1buo_A 101 AEILEIEY-------LEEQCLKMLETI 120 (121)
T ss_dssp HHHHTCHH-------HHHHHHHHHHHH
T ss_pred HHHHCCHH-------HHHHHHHHHHHh
Confidence 99999996 999999999874
No 6
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=165.90 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=106.4
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhc----ccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIK----QESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSI 77 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~----e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~ 77 (560)
..+|||+|.|+| +.|++||.+|+++|+||++||. |+....|.|++++ +++|+.+++|+|+ |++.++++|+..
T Consensus 32 ~~~~Dv~l~v~~-~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt-~~~~~~~~~~~~ 107 (172)
T 3htm_A 32 SRFTDCCLCVAG-QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYT-GKAPNLDKMADD 107 (172)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHH-SCCTTGGGTHHH
T ss_pred CCCcceEEEECC-EEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhC-CCCCCcHHHHHH
Confidence 368999999975 8999999999999999999998 3445689999998 7999999999999 999999999999
Q ss_pred HHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhCc---HHHHHHHHH
Q 008584 78 LHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGL---VDKFICALL 144 (560)
Q Consensus 78 L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~i---v~rcidsla 144 (560)
|+.+|++|+|++ |.+.|+.||.+.+.. .+|..++.+|+.+++ .+.|++-|+
T Consensus 108 ll~~A~~~~~~~-------l~~~c~~~l~~~l~~---------~n~~~~~~~A~~~~~~~L~~~~~~~i~ 161 (172)
T 3htm_A 108 LLAAADKYALER-------LKVMCEDALCSNLSV---------ENAAEILILADLHSADQLKTQAVDFIN 161 (172)
T ss_dssp HHHHHHHTTCHH-------HHHHHHHHHHHTCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHH-------HHHHHHHHHHHhCCH---------HHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999996 999999999998754 577888888888763 334544444
No 7
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.80 E-value=2.5e-19 Score=177.53 Aligned_cols=217 Identities=14% Similarity=0.155 Sum_probs=143.8
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcc------cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQ------ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNV 75 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e------~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV 75 (560)
..+|||+|.|+| +.|++||.+|+++|+||++||+. +....|.|++++ +++|+.+++|+|| |++.++.+||
T Consensus 29 ~~~~Dv~l~v~~-~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt-~~~~i~~~~v 104 (256)
T 3hve_A 29 SRFCDAHLVLDG-EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFS-GQIRLNEDTI 104 (256)
T ss_dssp -CCCCEEEEETT-EEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHH-SCCCCC-CCH
T ss_pred CCCcceEEEECC-EEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccC-CCCcccHhHH
Confidence 368999999985 89999999999999999999973 334589999998 7999999999999 9999999999
Q ss_pred HHHHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhCc---HHHHHHHHHHHHccCCc
Q 008584 76 SILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGL---VDKFICALLAKIAQHSD 152 (560)
Q Consensus 76 ~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~i---v~rcidsla~ka~~~~~ 152 (560)
..++.||++|||++ |++.|+.||.+.+.. .+|..++.+|+.+++ .+.|.+-|+.....
T Consensus 105 ~~ll~~A~~l~i~~-------l~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~--- 165 (256)
T 3hve_A 105 QDVVQAADLLLLTD-------LKTLCCEFLEGCIAA---------ENCIGIRDFALHYCLHHVHYLATEYLETHFRD--- 165 (256)
T ss_dssp HHHHHHHHHHTCHH-------HHHHHHHHHHHTCCS---------STTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHChHH-------HHHHHHHHHHhhCCH---------hhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---
Confidence 99999999999996 999999999998865 478888888888773 44565555443310
Q ss_pred ccccccCCCCCCCCCCCCCccccccccCCCCCCCCcccCCCCCCCCCCCCCchhhhhcccChHHHHHHHHHHhhhcCCCC
Q 008584 153 LSLIIASPSTPSSSSSPETSYGCRFSCTSTKTTPESIIKPSCSSSPSPSKAWWFDDLTILSPVIIEKISKGLGAYGAENN 232 (560)
Q Consensus 153 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~~~rvi~am~~~~~~~~ 232 (560)
. . . -++...|+.+....++..=. -.+.
T Consensus 166 ------------------------v--~--------------------~----~~~f~~L~~~~l~~lL~~d~---L~v~ 192 (256)
T 3hve_A 166 ------------------------V--S--------------------S----TEEFLELSPQKLKEVISLEK---LNVG 192 (256)
T ss_dssp ------------------------H--T--------------------T----CHHHHSSCHHHHHHHHHCC--------
T ss_pred ------------------------H--h--------------------C----CcchhcCCHHHHHHHHccCC---CCCC
Confidence 0 0 0 14566788888888875421 1122
Q ss_pred -hhhHHHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHhhccccCCCCccchhHHHHHHHHHHhcCCC-HHHHHHHHH
Q 008584 233 -SLILTRFLLHYLKGCVQAQSKGGGYGGNGSYSGLADTAVHGVIFIGKCSFSCRKLFWVLRIVSNFGIS-KDCRAGLEN 309 (560)
Q Consensus 233 -~~~i~~~l~~Ya~~~l~~~~~~~~~~~~~~~r~llE~iv~lllp~~k~~~s~~fLf~lLr~a~~l~as-~~cr~~LE~ 309 (560)
... +..-+.+|+..- . ..-...-..|++.| .+ ..+|..+|...+...-.+..+ +.||.-||+
T Consensus 193 ~E~~----v~~av~~W~~~~-~---~~R~~~~~~ll~~V-Rf------~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~ 256 (256)
T 3hve_A 193 NERY----VFEAVIRWIAHD-T---EIRKVHMKDVMSAL-WV------SGLDSSYLREQMLNEPLVREIVKECSNIPLS 256 (256)
T ss_dssp --CT----THHHHTTTCCC------CCSTTTHHHHHHHH-HH------HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred CHHH----HHHHHHHHHHcC-H---HHHHHHHHHHHHhC-CC------CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence 223 334445665420 0 00011224566655 22 235667788777766666666 568877764
No 8
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.80 E-value=4.6e-20 Score=167.10 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=85.8
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCC 81 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~cA 81 (560)
..+|||+|.|+| +.|++||.+|+++|+||++||.......|.|++++ +++|+.+++|+|+ |++.++.+||..|+.|
T Consensus 23 ~~~~Dv~l~v~~-~~f~aHk~vLaa~S~yF~~mf~~~~~~~i~l~~~~--~~~f~~lL~fiYt-g~~~i~~~~v~~ll~~ 98 (135)
T 2yy9_A 23 GQYCDATLDVGG-LVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGF--AEIFGLLLDFFYT-GHLALTSGNRDQVLLA 98 (135)
T ss_dssp TTTCCEEEEETT-EEEEECHHHHHHHCHHHHHTCC----CCEEECGGG--HHHHHHHHHHHHH-SCCCCCTTTHHHHHHH
T ss_pred CCCcceEEEECC-EEEehHHHHHHHhCHHHHHHHcCCCCCeEEeCCCC--HHHHHHHHHHHhC-CCCCCCHHHHHHHHHH
Confidence 368999999985 89999999999999999999996656689999998 7999999999999 9999999999999999
Q ss_pred HhHhccccccCCcchHHHHHHHHHHhhhc
Q 008584 82 SIFLGMTDTVSSTNNLLQQTESFLEGMFY 110 (560)
Q Consensus 82 Ae~LqMte~~~~~~NL~~~~e~FL~~~v~ 110 (560)
|++|+|++ |++.|++||.+.+.
T Consensus 99 A~~l~i~~-------L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 99 AKELRVPE-------AVELCQSFQPQTSV 120 (135)
T ss_dssp HHHTTCHH-------HHHHHHHCCC----
T ss_pred HHHhCcHH-------HHHHHHHHHHHhcc
Confidence 99999996 99999999988764
No 9
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.80 E-value=1.9e-19 Score=158.78 Aligned_cols=94 Identities=20% Similarity=0.400 Sum_probs=86.4
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcc----cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQ----ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSI 77 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e----~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~ 77 (560)
..+|||+|.|+| .+|++||.+|+++|+||++||.. +....|.|++++ +++|+.+++|+|| |++.++.+|+..
T Consensus 23 ~~~~Dv~l~v~~-~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~ll~~~Yt-~~~~~~~~~~~~ 98 (120)
T 2if5_A 23 GLLCDVVILVEG-REFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVS--AEALTALMDFAYT-ATLTVSTANVGD 98 (120)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSC--HHHHHHHHHHHHH-SCCCCCGGGHHH
T ss_pred CCCCCeEEEECC-EEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCC--HHHHHHHHHHHcC-CCCccCHHHHHH
Confidence 468999999985 89999999999999999999983 445689999998 7999999999999 999999999999
Q ss_pred HHHHHhHhccccccCCcchHHHHHHHHHH
Q 008584 78 LHCCSIFLGMTDTVSSTNNLLQQTESFLE 106 (560)
Q Consensus 78 L~cAAe~LqMte~~~~~~NL~~~~e~FL~ 106 (560)
|+.||++|+|++ |++.|++||+
T Consensus 99 ll~~A~~~~i~~-------L~~~C~~~L~ 120 (120)
T 2if5_A 99 ILSAARLLEIPA-------VSHVCADLLD 120 (120)
T ss_dssp HHHHHHHTTCHH-------HHHHHHHHHC
T ss_pred HHHHHHHhCCHH-------HHHHHHHHhC
Confidence 999999999996 9999999984
No 10
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.79 E-value=7.3e-20 Score=163.98 Aligned_cols=96 Identities=21% Similarity=0.541 Sum_probs=82.1
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEec-CCCCCHHHHHHHHHHHhcCCccccChhhHHHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIK-GFPGGPTGFELVSRFCYNNGRIKITVSNVSILHC 80 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~-d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~c 80 (560)
..+|||+|.|+| +.|++||.+|+++|+||++||.......|.|+ +++ +++|+.+++|+|+ |++.++.+||..|+.
T Consensus 31 ~~~~Dv~l~v~~-~~~~~Hk~vLaa~S~~F~~~f~~~~~~~i~l~~~~~--~~~f~~ll~~iYt-g~~~i~~~~~~~ll~ 106 (129)
T 3ga1_A 31 GLYCDVSVVVKG-HAFKAHRAVLAASSSYFRDLFNNSRSAVVELPAAVQ--PQSFQQILSFCYT-GRLSMNVGDQDLLMY 106 (129)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHBHHHHHHHHHCCCSEEECCTTCC--HHHHHHHHHHHHH-SEEECCTTTHHHHHH
T ss_pred CCCcceEEEECC-EEEEehHHHHHHcCHHHHHHHcCCCCCEEEECCCCC--HHHHHHHHHHHhC-CccccCHHHHHHHHH
Confidence 368999999985 89999999999999999999997666799996 898 7999999999999 999999999999999
Q ss_pred HHhHhccccccCCcchHHHHHHHHHHhh
Q 008584 81 CSIFLGMTDTVSSTNNLLQQTESFLEGM 108 (560)
Q Consensus 81 AAe~LqMte~~~~~~NL~~~~e~FL~~~ 108 (560)
||++|||++ |++.|++||.+.
T Consensus 107 ~A~~~~i~~-------l~~~C~~~L~~~ 127 (129)
T 3ga1_A 107 TAGFLQIQE-------IMEKGTEFFLKV 127 (129)
T ss_dssp HHHHTTBTT-------SSCC--------
T ss_pred HHHHhCCHH-------HHHHHHHHHHHh
Confidence 999999997 788999999875
No 11
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.79 E-value=9.9e-20 Score=164.39 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=85.0
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcc----cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQ----ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSI 77 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e----~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~ 77 (560)
..+|||+|.|+| +.|++||.+|+++|+||++||.. +....|.|++++ +++|+.+++|+|| |++.++.+|+..
T Consensus 23 ~~~~Dv~l~v~~-~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~~~~~l~~~Y~-~~~~~~~~~~~~ 98 (145)
T 4eoz_A 23 SRFTDCCLCVAG-QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYT-GKAPNLDKMADD 98 (145)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSC--HHHHHHHHHHHHH-SCCTTGGGTHHH
T ss_pred CCCcceEEEECC-EEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCC--HHHHHHHHHhhcc-CccCCcHHHHHH
Confidence 368999999985 89999999999999999999984 334589999998 7999999999999 999999999999
Q ss_pred HHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhCc
Q 008584 78 LHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGL 135 (560)
Q Consensus 78 L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~i 135 (560)
++.+|++++|++ |.+.|+.||.+.+.. .+|..++.+|+.+++
T Consensus 99 ll~~A~~~~~~~-------l~~~c~~~l~~~l~~---------~n~~~~l~~A~~~~~ 140 (145)
T 4eoz_A 99 LLAAADKYALER-------LKVMCEDALCSNLSV---------ENAAEILILADLHSA 140 (145)
T ss_dssp HHHHHHHTTCHH-------HHHHHHCC-------------------------------
T ss_pred HHHHHHHhCHHH-------HHHHHHHHHHHhCCH---------HHHHHHHHHHHHhCH
Confidence 999999999996 999999999988743 578888888887764
No 12
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.79 E-value=2.7e-19 Score=162.24 Aligned_cols=100 Identities=23% Similarity=0.410 Sum_probs=89.9
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccC--CCeEEec-CCCCCHHHHHHHHHHHhcCCccccChhhHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQES--RRVIEIK-GFPGGPTGFELVSRFCYNNGRIKITVSNVSIL 78 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~--~~~i~L~-d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L 78 (560)
..+|||+|.|+| ..|++||.+|+++|+||++||.... ...|.|. +++ +++|+.+++|+|| |++.++.+||..|
T Consensus 34 ~~~~Dv~l~v~~-~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~--~~~~~~lL~~~Yt-g~~~i~~~~v~~l 109 (138)
T 2z8h_A 34 DVLCDVTVLVEG-QRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVT--VKGFEPLIQFAYT-AKLILSKDNVDEV 109 (138)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSC--HHHHHHHHHHHHH-SCCCCCTTTHHHH
T ss_pred CCCcCeEEEECC-EEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCC--HHHHHHHHHHhcC-CCcccCHHHHHHH
Confidence 368999999985 8999999999999999999998533 2478884 888 7999999999999 9999999999999
Q ss_pred HHHHhHhccccccCCcchHHHHHHHHHHhhhccC
Q 008584 79 HCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWS 112 (560)
Q Consensus 79 ~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~s 112 (560)
+.||++|+|++ |++.|+.||.+.+..+
T Consensus 110 l~~A~~~~i~~-------L~~~C~~~l~~~l~~s 136 (138)
T 2z8h_A 110 CRCVEFLSVHN-------IEESCFQFLKFKFLDS 136 (138)
T ss_dssp HHHHHHHTCGG-------GHHHHHHHTTCCCSCC
T ss_pred HHHHHHhCCHH-------HHHHHHHHHHHhcccc
Confidence 99999999997 9999999999887643
No 13
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.79 E-value=3.8e-19 Score=158.48 Aligned_cols=96 Identities=20% Similarity=0.423 Sum_probs=88.0
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhccc---CCCeEEe-cCCCCCHHHHHHHHHHHhcCCccccChhhHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQE---SRRVIEI-KGFPGGPTGFELVSRFCYNNGRIKITVSNVSI 77 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~---~~~~i~L-~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~ 77 (560)
..+|||+|.|+| ++|++||.+|+++|+||++||... ....|.| ++++ +++|+.+++|+|+ |++.++++||..
T Consensus 27 ~~~~Dv~l~v~~-~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~--~~~f~~ll~~~Yt-g~~~~~~~~~~~ 102 (127)
T 1r29_A 27 DILTDVVIVVSR-EQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYT-SRLNLREGNIMA 102 (127)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHH-SCCCCCTTTHHH
T ss_pred CCCCCEEEEECC-EEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCC--HHHHHHHHHHHcC-CCcCcCHHHHHH
Confidence 468999999985 899999999999999999999842 3458999 8998 7999999999999 999999999999
Q ss_pred HHHHHhHhccccccCCcchHHHHHHHHHHhh
Q 008584 78 LHCCSIFLGMTDTVSSTNNLLQQTESFLEGM 108 (560)
Q Consensus 78 L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~ 108 (560)
|+.||++|+|++ |++.|+.||.+.
T Consensus 103 ll~~A~~~~i~~-------L~~~c~~~l~~~ 126 (127)
T 1r29_A 103 VMATAMYLQMEH-------VVDTCRKFIKAS 126 (127)
T ss_dssp HHHHHHHTTCHH-------HHHHHHHHHHTC
T ss_pred HHHHHHHhCCHH-------HHHHHHHHHHhc
Confidence 999999999996 999999999763
No 14
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.78 E-value=1.5e-19 Score=159.99 Aligned_cols=93 Identities=22% Similarity=0.409 Sum_probs=85.4
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCC 81 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~cA 81 (560)
..+|||+|.|+| ..|++||.+|+++|+||++||+.. ...|.|++++ +++|+.+++|+|| |++.++++||..|+.|
T Consensus 25 ~~~~Dv~l~v~~-~~~~aHk~vLaa~S~yF~~~f~~~-~~~i~l~~~~--~~~f~~ll~~~Yt-g~~~i~~~~~~~ll~~ 99 (119)
T 2q81_A 25 GLLCDCTFVVDG-VHFKAHKAVLAACSEYFKMLFVDQ-KDVVHLDISN--AAGLGQVLEFMYT-AKLSLSPENVDDVLAV 99 (119)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHCHHHHHHHHHC-CSGGGGGGCC--HHHHHHHHHHHHH-SCCCCCTTTHHHHHHH
T ss_pred CCCcceEEEECC-EEEehhHHHHHHcCHHHHHHHcCC-CCEEEeCCCC--HHHHHHHHHHHcC-CCCccCHHHHHHHHHH
Confidence 368999999985 899999999999999999999863 3467788887 7999999999999 9999999999999999
Q ss_pred HhHhccccccCCcchHHHHHHHHHH
Q 008584 82 SIFLGMTDTVSSTNNLLQQTESFLE 106 (560)
Q Consensus 82 Ae~LqMte~~~~~~NL~~~~e~FL~ 106 (560)
|++|+|++ |++.|++||.
T Consensus 100 A~~l~i~~-------L~~~C~~~l~ 117 (119)
T 2q81_A 100 ATFLQMQD-------IITACHALKS 117 (119)
T ss_dssp HHHTTCHH-------HHHHHHHHHT
T ss_pred HHHhCCHH-------HHHHHHHHHh
Confidence 99999996 9999999985
No 15
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.77 E-value=5.3e-19 Score=162.12 Aligned_cols=94 Identities=19% Similarity=0.352 Sum_probs=85.1
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcc------cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQ------ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNV 75 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e------~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV 75 (560)
..+|||+|.|+| ..|++||.+|+++|+||++||.. +....|.|++++ +++|+.+++|+|+ |++.++.+||
T Consensus 45 ~~~~Dv~l~v~~-~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYt-g~~~i~~~~v 120 (144)
T 2ppi_A 45 SRFCDAHLVLDG-EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFS-GQIRLNEDTI 120 (144)
T ss_dssp -CCCCEEEEETT-EEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTT-SCCCCCTTTH
T ss_pred CCCcceEEEECC-EEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhC-CCCCCCHHHH
Confidence 368999999985 89999999999999999999973 344589999998 7999999999999 9999999999
Q ss_pred HHHHHHHhHhccccccCCcchHHHHHHHHHH
Q 008584 76 SILHCCSIFLGMTDTVSSTNNLLQQTESFLE 106 (560)
Q Consensus 76 ~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~ 106 (560)
..|+.||++|+|++ |++.|++||.
T Consensus 121 ~~ll~~A~~l~i~~-------L~~~C~~~L~ 144 (144)
T 2ppi_A 121 QDVVQAADLLLLTD-------LKTLCCEFLE 144 (144)
T ss_dssp HHHHHHHHHTTCHH-------HHHHHHTTC-
T ss_pred HHHHHHHHHhCcHH-------HHHHHHHHhC
Confidence 99999999999996 9999999974
No 16
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.76 E-value=4.3e-19 Score=158.18 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=81.7
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHHHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCC 81 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L~cA 81 (560)
..+|||+|.|+| +.|++||.+|+++|+||++ ....|+|++++ +++|+.+++|+|| |++.|+.+||..|+.|
T Consensus 28 ~~~~Dv~l~v~~-~~f~aHk~vLaa~S~yF~~-----~~~~i~l~~v~--~~~f~~ll~fiYt-g~~~i~~~~v~~ll~a 98 (119)
T 3m5b_A 28 PALCDTLITVGS-QEFPAHSLVLAGVSQQLGR-----RGQWALGEGIS--PSTFAQLLNFVYG-ESVELQPGELRPLQEA 98 (119)
T ss_dssp TTTCCEEEEETT-EEEEECHHHHHTTCGGGCC-----CEEEECCSSCC--HHHHHHHHHHHTT-CCEEECGGGHHHHHHH
T ss_pred CCCcceEEEECC-EEEeeEHHHHHHcCHHHhc-----CCCEEEeCCCC--HHHHHHHHHHHcC-CCcCcCHHHHHHHHHH
Confidence 368999999975 8999999999999999985 34578899998 7999999999999 9999999999999999
Q ss_pred HhHhccccccCCcchHHHHHHHHHHh
Q 008584 82 SIFLGMTDTVSSTNNLLQQTESFLEG 107 (560)
Q Consensus 82 Ae~LqMte~~~~~~NL~~~~e~FL~~ 107 (560)
|++|||++ |++.|++++.+
T Consensus 99 A~~l~i~~-------l~~~C~~~~~~ 117 (119)
T 3m5b_A 99 ARALGVQS-------LEEACWRARGD 117 (119)
T ss_dssp HHHTTCHH-------HHHHHHHHC--
T ss_pred HHHhCCHH-------HHHHHHHHHhh
Confidence 99999996 99999999875
No 17
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.76 E-value=2.7e-19 Score=159.09 Aligned_cols=93 Identities=23% Similarity=0.426 Sum_probs=83.2
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccC--CCeEEecC-CCCCHHHHHHHHHHHhcCCccccChhhHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQES--RRVIEIKG-FPGGPTGFELVSRFCYNNGRIKITVSNVSIL 78 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~--~~~i~L~d-~pgG~e~Felv~~FcYg~g~i~it~~NV~~L 78 (560)
..+|||+|.|+| +.|++||.+|+++|+||++||.... ...|.+++ ++ +++|+.+++|+|| |++.++.+||..|
T Consensus 30 ~~~~Dv~l~v~~-~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~--~~~f~~~l~~iYt-g~~~~~~~~v~~l 105 (125)
T 3ohu_A 30 DILCDVTLIVER-KEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVT--ARGFGPLLQFAYT-AKLLLSRENIREV 105 (125)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCC--HHHHHHHHHHHTT-SEEEECTTTHHHH
T ss_pred CCccceEEEECC-EEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCC--HHHHHHHHHhHcC-CceEECHHHHHHH
Confidence 368999999985 8999999999999999999998533 44788887 88 7999999999999 9999999999999
Q ss_pred HHHHhHhccccccCCcchHHHHHHHHH
Q 008584 79 HCCSIFLGMTDTVSSTNNLLQQTESFL 105 (560)
Q Consensus 79 ~cAAe~LqMte~~~~~~NL~~~~e~FL 105 (560)
+.||++|+|++ |++.|++||
T Consensus 106 l~~A~~l~i~~-------L~~~C~~~L 125 (125)
T 3ohu_A 106 IRCAEFLRMHN-------LEDSCFSFL 125 (125)
T ss_dssp HHHHHHHTBSS-------CTTSSCCCC
T ss_pred HHHHHHhCCHH-------HHHHHHHhC
Confidence 99999999997 667777764
No 18
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.75 E-value=4.7e-19 Score=157.86 Aligned_cols=94 Identities=24% Similarity=0.452 Sum_probs=83.5
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccC--CCeEEe-cCCCCCHHHHHHHHHHHhcCCccccChhhHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQES--RRVIEI-KGFPGGPTGFELVSRFCYNNGRIKITVSNVSIL 78 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~--~~~i~L-~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~L 78 (560)
..+|||+|.|+| +.|++||.+|+++|+||++||+... ...|.+ .+++ +++|+.+++|+|| |++.++++||..|
T Consensus 27 ~~~~Dv~l~v~~-~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~--~~~f~~lL~~iYt-g~~~i~~~~v~~l 102 (124)
T 2ihc_A 27 DVLCDVTIFVEG-QRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVT--VKGFEPLIQFAYT-AKLILSKENVDEV 102 (124)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSC--HHHHHHHHHHHHH-SEEEEETTTHHHH
T ss_pred CCCcCEEEEECC-EEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcC--HHHHHHHHHHhcC-CCcccCHHHHHHH
Confidence 368999999985 8999999999999999999998532 247888 5887 7999999999999 9999999999999
Q ss_pred HHHHhHhccccccCCcchHHHHHHHHHH
Q 008584 79 HCCSIFLGMTDTVSSTNNLLQQTESFLE 106 (560)
Q Consensus 79 ~cAAe~LqMte~~~~~~NL~~~~e~FL~ 106 (560)
+.||++|+|++ |++.|++||.
T Consensus 103 l~~A~~~~~~~-------L~~~C~~~l~ 123 (124)
T 2ihc_A 103 CKCVEFLSVHN-------IEESCFQFLK 123 (124)
T ss_dssp HHHHHHHTBSS-------CCGGGGGTC-
T ss_pred HHHHHHHCCHH-------HHHHHHHHHh
Confidence 99999999997 7789998874
No 19
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.72 E-value=1.7e-17 Score=168.64 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=107.6
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhc----ccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChhhHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIK----QESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSI 77 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~----e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~NV~~ 77 (560)
..+|||+|.|+| ++|++||.+|+++|+||++||. |+...+|.|++++ +++|+.+++|+|| +++.++..|+..
T Consensus 172 ~~~~Dv~l~v~~-~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~L~~iYt-~~~~~~~~~~~~ 247 (312)
T 3hqi_A 172 SRFTDCCLCVAG-QEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYT-GKAPNLDKMADD 247 (312)
T ss_dssp TCSCCEEEEETT-EEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSC--HHHHHHHHHHHHH-SCCTTHHHHHHH
T ss_pred CCCCceEEEECC-EEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCC--HHHHHHHHHhhcC-CCCCChHHHHHH
Confidence 468999999975 8999999999999999999997 4455689999998 7999999999999 999999999999
Q ss_pred HHHHHhHhccccccCCcchHHHHHHHHHHhhhccChhHHHHHhhcchhHHHHHHHhC---cHHHHHHHHHH
Q 008584 78 LHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCG---LVDKFICALLA 145 (560)
Q Consensus 78 L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~~~---iv~rcidsla~ 145 (560)
|+.||++++|+. |+..|+.||.+.+.. .+|..++.+|+.++ +...|++-|+.
T Consensus 248 ll~~A~~~~~~~-------l~~~c~~~l~~~~~~---------~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 302 (312)
T 3hqi_A 248 LLAAADKYALER-------LKVMCEDALCSNLSV---------ENAAEILILADLHSADQLKTQAVDFINY 302 (312)
T ss_dssp HHHHHHHTTCHH-------HHHHHHHHHHTTCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHH-------HHHHHHHHHHccCCH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999996 999999999988743 57777888888774 55577776664
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.70 E-value=3.1e-17 Score=144.98 Aligned_cols=83 Identities=16% Similarity=0.320 Sum_probs=77.2
Q ss_pred CCCccEEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEecCCCCCHHHHHHHHHHHhcCCcc-ccChhhHHHHHH
Q 008584 2 SQLCDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRI-KITVSNVSILHC 80 (560)
Q Consensus 2 ~~l~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i-~it~~NV~~L~c 80 (560)
..+|||+|.|+| +.|++||.+|+++|+||++||... ...|.|++++ +++|+.+++|+|| |++ .++++||..|+.
T Consensus 29 ~~~~Dv~l~v~~-~~f~aHk~vLaa~S~~F~~~f~~~-~~~i~l~~~~--~~~f~~~l~~~Yt-g~~~~~~~~~~~~ll~ 103 (116)
T 3fkc_A 29 GLFCDVTVIVED-RKFRAHKNILSASSTYFHQLFSVA-GQVVELSFIR--AEIFAEILNYIYS-SKIVRVRSDLLDELIK 103 (116)
T ss_dssp TTTCCEEEEETT-EEEEECHHHHHHHCHHHHHHTTSC-CSEEEECSSC--HHHHHHHHHHHTT-SCCCSCCHHHHHHHHH
T ss_pred CCceeEEEEECC-EEEehhHHHHHHcCHHHHHHHcCC-CCEEEeCCCC--HHHHHHHHHhhcC-CCcCCCCHHHHHHHHH
Confidence 368999999975 899999999999999999999865 4589999998 7999999999999 999 799999999999
Q ss_pred HHhHhcccc
Q 008584 81 CSIFLGMTD 89 (560)
Q Consensus 81 AAe~LqMte 89 (560)
||++|||+.
T Consensus 104 ~A~~l~i~~ 112 (116)
T 3fkc_A 104 SGQLLGVKF 112 (116)
T ss_dssp HHHHHTCHH
T ss_pred HHHHhCccc
Confidence 999999985
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.33 E-value=3.1e-12 Score=119.56 Aligned_cols=94 Identities=15% Similarity=0.254 Sum_probs=81.8
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhcc-c-C----CCeEEecCCCCCHHHHHHHHHHHhcCCc-------------
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQ-E-S----RRVIEIKGFPGGPTGFELVSRFCYNNGR------------- 67 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e-~-~----~~~i~L~d~pgG~e~Felv~~FcYg~g~------------- 67 (560)
|+|...+|..|.+|+.+ |+.|+||+.||.. . . ...|.|++++ +.+++.+++|||. .+
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~--~~iL~kViey~~~-h~~~~~~~~~~~~~~ 78 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVN--AAILKKVIQWCTH-HKDDPPPPEDDENKE 78 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSC--HHHHHHHHHHHHH-TTTCCC---------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCcc--HHHHHHHHHHHHH-cCcCCCCcccccccc
Confidence 67765445899999999 9999999999985 2 1 2479999999 6999999999999 77
Q ss_pred -------------cccChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhhcc
Q 008584 68 -------------IKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYW 111 (560)
Q Consensus 68 -------------i~it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~~ 111 (560)
+.|+..|+..|+.||+||+|.. |++.|+.|+...+..
T Consensus 79 ~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~-------Lld~~c~~va~~i~g 128 (159)
T 2ast_A 79 KRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKG-------LLDVTCKTVANMIKG 128 (159)
T ss_dssp --CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHH-------HHHHHHHHHHHHHSS
T ss_pred cchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHcC
Confidence 8899999999999999999996 999999999998854
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.17 E-value=7.1e-11 Score=101.68 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=65.6
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhccc------CCCeEEecCCCCCHHHHHHHHHHHh-----c--CCccc---c
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQE------SRRVIEIKGFPGGPTGFELVSRFCY-----N--NGRIK---I 70 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~------~~~~i~L~d~pgG~e~Felv~~FcY-----g--~g~i~---i 70 (560)
|++.-.+|.+|.+||.+ |+.|+||+.||+.. ....|.|++++ +.+++.+++||| + ++.|. |
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 56665456899999999 99999999999842 24589999999 699999999999 4 16777 9
Q ss_pred ChhhHHHHHHHHhHhcc
Q 008584 71 TVSNVSILHCCSIFLGM 87 (560)
Q Consensus 71 t~~NV~~L~cAAe~LqM 87 (560)
+++|+..|+.||+||+.
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 99999999999999973
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.08 E-value=2.3e-10 Score=105.08 Aligned_cols=93 Identities=15% Similarity=0.259 Sum_probs=82.5
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhcccCCCeEEecCCCCCHHHHHHHHHHHhcCCc-------------------
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGR------------------- 67 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~------------------- 67 (560)
|++...+|+.|.+|+.+ |..|+||+.||.......|.|++++ +.+++.+++|||. .+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~~~Ipl~~V~--~~iL~kVieyc~~-h~~~~~~~~~~~~~~~~~~~i 79 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDPVPLPNVN--AAILKKVIQWCTH-HKDDPPPPEDDENKEKRTDDI 79 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTCCSSEECTTCC--HHHHHHHHHHHHH-HTTCC----------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCCCceecCCcC--HHHHHHHHHHHHH-hccCCCccccccccccchhhh
Confidence 77777556899999998 8999999999985335589999999 5999999999998 44
Q ss_pred -------cccChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhhc
Q 008584 68 -------IKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFY 110 (560)
Q Consensus 68 -------i~it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~ 110 (560)
+.++..++..|+.||+||+|.. |++.||.|+...+-
T Consensus 80 ~~wD~~F~~vd~~~l~eLi~AAnyL~I~~-------Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 80 PVWDQEFLKVDQGTLFELILAANYLDIKG-------LLDVTCKTVANMIK 122 (141)
T ss_dssp -HHHHHHTCSCHHHHHHHHHHHHHHTCHH-------HHHHHHHHHHHHHT
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHc
Confidence 7899999999999999999995 99999999998874
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.82 E-value=6.4e-10 Score=104.14 Aligned_cols=93 Identities=15% Similarity=0.251 Sum_probs=51.8
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhccc-CCCeEEecCCCCCHHHHHHHHHHHhcCCc------------------
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQE-SRRVIEIKGFPGGPTGFELVSRFCYNNGR------------------ 67 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~-~~~~i~L~d~pgG~e~Felv~~FcYg~g~------------------ 67 (560)
|++...+|..|.+|+.+ |..|+||+.||... ....|.|++++ +.+++.+++|||. .+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~~~~Ipl~~V~--~~iL~kVieyc~~-h~~~~~~~~~~~~~~~~~~~ 81 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCVDNGVPLPNVT--SKILAKVIEYCKR-HVEAAASKAEAVEGAATSDD 81 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC------------CCTTSC--HHHHHHHHHC------------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCCCCceeCCcCc--HHHHHHHHHHHHH-cccCCCcccccccccccccc
Confidence 66665335899999998 89999999999853 33478899999 5999999999999 44
Q ss_pred ---------cccChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhhc
Q 008584 68 ---------IKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFY 110 (560)
Q Consensus 68 ---------i~it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~ 110 (560)
+.++..++..|+.||+||+|.. |++.||.|+...+-
T Consensus 82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~-------Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 82 DLKAWDADFMKIDQATLFELILAANYLNIKN-------LLDLTCQTVADMIK 126 (160)
T ss_dssp -------------------CHHHHHHTTCHH-------HHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHc
Confidence 5789999999999999999995 99999999998874
No 25
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.31 E-value=2.3e-06 Score=80.79 Aligned_cols=96 Identities=11% Similarity=0.185 Sum_probs=79.3
Q ss_pred ccEEEEecCceeEechHHHHhhcCHHHHHhhcccC------C--CeEEecCCCCCHHHHHHHHHHHhcCCc---------
Q 008584 5 CDIQIHVNGHQTFFLNEQTITKYSERLKKIIKQES------R--RVIEIKGFPGGPTGFELVSRFCYNNGR--------- 67 (560)
Q Consensus 5 ~Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~------~--~~i~L~d~pgG~e~Felv~~FcYg~g~--------- 67 (560)
.-|+|.-.+|..|.+++.+ |..|++++.|+.... . ..|.|++++ +.+++.|+.|||-+..
T Consensus 7 ~~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~ 83 (169)
T 3v7d_A 7 SNVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDD 83 (169)
T ss_dssp CEEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC----
T ss_pred CeEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCcccccc
Confidence 4577777666999999997 889999999997422 2 579999999 5999999999987321
Q ss_pred ---------------cccChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhhc
Q 008584 68 ---------------IKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFY 110 (560)
Q Consensus 68 ---------------i~it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v~ 110 (560)
+.+....+..|..||+||+|.. |++.||.++...+-
T Consensus 84 ~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~-------Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 84 DSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKP-------LLDAGCKVVAEMIR 134 (169)
T ss_dssp ----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHT
T ss_pred cccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHHc
Confidence 4578899999999999999995 99999999987663
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.25 E-value=2.3e-06 Score=73.52 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=63.7
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhcccC------CCeEEecCCCCCHHHHHHHHHHHhcCC----------cccc
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQES------RRVIEIKGFPGGPTGFELVSRFCYNNG----------RIKI 70 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~------~~~i~L~d~pgG~e~Felv~~FcYg~g----------~i~i 70 (560)
|++.-.+|..|.+|+.+ |..|++|+.|+.... ...|.|++++ +.+++.+++|||-+. ...+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 56666445899999996 899999999997421 2489999999 599999999999621 1368
Q ss_pred ChhhHHHHHHHHhHhcc
Q 008584 71 TVSNVSILHCCSIFLGM 87 (560)
Q Consensus 71 t~~NV~~L~cAAe~LqM 87 (560)
....+..|..||+||++
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 89999999999999985
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.20 E-value=4.5e-06 Score=72.13 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=65.5
Q ss_pred cEEEEecCceeEechHHHHhhcCHHHHHhhcc---cCCCeEEecCCCCCHHHHHHHHHHHhcCC-------------ccc
Q 008584 6 DIQIHVNGHQTFFLNEQTITKYSERLKKIIKQ---ESRRVIEIKGFPGGPTGFELVSRFCYNNG-------------RIK 69 (560)
Q Consensus 6 Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e---~~~~~i~L~d~pgG~e~Felv~~FcYg~g-------------~i~ 69 (560)
-|++.-.+|..|.+|+.+ |..|++++.|+.. .....|.|++++ +.+++.+++|||-+. ...
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~ 81 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFE 81 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCcc
Confidence 367777456999999996 8999999999974 223589999999 599999999999721 136
Q ss_pred cChhhHHHHHHHHhHhcc
Q 008584 70 ITVSNVSILHCCSIFLGM 87 (560)
Q Consensus 70 it~~NV~~L~cAAe~LqM 87 (560)
+....+..|..||+||++
T Consensus 82 vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 82 IPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 888999999999999985
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.70 E-value=8.4e-05 Score=65.67 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=63.0
Q ss_pred EEEEecCceeEechHHHHhhcCHHHHHhhcccC------CCeEEecCCCCCHHHHHHHHHHHhcCCc----------ccc
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERLKKIIKQES------RRVIEIKGFPGGPTGFELVSRFCYNNGR----------IKI 70 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yfr~lf~e~~------~~~i~L~d~pgG~e~Felv~~FcYg~g~----------i~i 70 (560)
|++.-.+|..|.+++. .|..|+.++.|+.... ...|.|++++ +.+++.+++|||-+.. ..+
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~i~~w~v 95 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 95 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHSSCSSCCCCCCC
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCC--HHHHHHHHHHHHHhhhccCCcCCCCCccc
Confidence 5666444589999999 5799999999997422 2479999999 5999999999986211 368
Q ss_pred ChhhHHHHHHHHhHhcc
Q 008584 71 TVSNVSILHCCSIFLGM 87 (560)
Q Consensus 71 t~~NV~~L~cAAe~LqM 87 (560)
....+..|+.||+||++
T Consensus 96 d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 96 APEIALELLMAANFLDC 112 (112)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 89999999999999985
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.45 E-value=0.0007 Score=58.97 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=70.1
Q ss_pred EEEEecCceeEechHHHHhhcC-HHHHHhhccc--------CCCeEEecCCCCCHHHHHHHHHHHhcCCccccChh-hHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYS-ERLKKIIKQE--------SRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVS-NVS 76 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S-~yfr~lf~e~--------~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~-NV~ 76 (560)
|+|.|+| +.|...+..|.... .+|.+||... ....+-+ |-+ |+.|+.+++|..+ |++.+..+ .+.
T Consensus 8 v~LNVGG-~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRd--p~~F~~IL~~lr~-g~l~~p~~~~~~ 82 (107)
T 3drz_A 8 VRLNVGG-TYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRD--PTYFGPVLNYLRH-GKLVINKDLAEE 82 (107)
T ss_dssp EEEEETT-EEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSC--HHHHHHHHHHHHH-SCCCCCTTSCHH
T ss_pred EEEEECC-EEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCC--hHHHHHHHHHhCC-CeeCCCCCCCHH
Confidence 6789975 99999999999886 5789998732 1224544 444 7999999999999 99887543 567
Q ss_pred HHHHHHhHhccccccCCcchHHHHHHHHHHh
Q 008584 77 ILHCCSIFLGMTDTVSSTNNLLQQTESFLEG 107 (560)
Q Consensus 77 ~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~ 107 (560)
.++..|+|.++++ |++.|++-+.+
T Consensus 83 ~l~~Ea~fy~l~~-------L~~~l~~~i~~ 106 (107)
T 3drz_A 83 GVLEEAEFYNITS-------LIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHTCHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHH-------HHHHHHHHHhc
Confidence 8999999999997 88888776543
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=94.91 E-value=0.045 Score=53.06 Aligned_cols=89 Identities=18% Similarity=0.269 Sum_probs=68.9
Q ss_pred EEEEecCceeEechHHHHhhcC-HHHHHhhcccC--------CCeEEecCCCCCHHHHHHHHHHHhcCCccccChh-hHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYS-ERLKKIIKQES--------RRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVS-NVS 76 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S-~yfr~lf~e~~--------~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~-NV~ 76 (560)
|+|.|+| ..|...+..|.... .+|.+||.... ...+-| |-+ |..|+.|++|.-+ |++.+..+ .+.
T Consensus 14 V~LNVGG-~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRD--P~~F~~ILnyLRt-G~L~lP~~~~~~ 88 (202)
T 3drx_A 14 VRLNVGG-TYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRD--PTYFGPVLNYLRH-GKLVINKDLAEE 88 (202)
T ss_dssp EEEEETT-EEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSC--STTHHHHHHHHHH-SCCCCCTTSCHH
T ss_pred EEEEECC-EEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCC--hHHHHHHHHHhcC-CccCCCCCCCHH
Confidence 6789975 99999999998775 48899986321 124444 333 5899999999999 99987443 557
Q ss_pred HHHHHHhHhccccccCCcchHHHHHHHHHHh
Q 008584 77 ILHCCSIFLGMTDTVSSTNNLLQQTESFLEG 107 (560)
Q Consensus 77 ~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~ 107 (560)
.++.-|+|+++++ |++.|+.-+.+
T Consensus 89 ~l~eEA~FygL~~-------Lv~~l~~~i~e 112 (202)
T 3drx_A 89 GVLEEAEFYNITS-------LIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHHTTCHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHCCcHH-------HHHHHHHHHHH
Confidence 8999999999996 88888887754
No 31
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=91.99 E-value=0.21 Score=43.99 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=61.5
Q ss_pred ccEEEEecCceeEechHHHHhhcCH-HHHHhhccc-----CCCeEEecCCCCCHHHHHHHHHHHhcCCccccChh-hHHH
Q 008584 5 CDIQIHVNGHQTFFLNEQTITKYSE-RLKKIIKQE-----SRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVS-NVSI 77 (560)
Q Consensus 5 ~Dv~v~V~g~~~F~lHK~~Las~S~-yfr~lf~e~-----~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~-NV~~ 77 (560)
-=|+|.|+| +.|...+..|....+ .|.+|++.. ....+-|. =+ |..|..|++|.-+ |++.+.++ .+..
T Consensus 5 ~~V~LNVGG-~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD-Rd--p~~F~~ILnylR~-G~l~~p~~~~~~~ 79 (115)
T 3kvt_A 5 NRVIINVGG-IRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD-RH--PGVFAQIINYYRS-GKLHYPTDVCGPL 79 (115)
T ss_dssp CEEEEEETT-EEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC-SC--TTTHHHHHHHHHH-SCBCCCSSSCHHH
T ss_pred CEEEEEECC-EEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe-cC--hHHHHHHHHHhcC-CCCCCCCcccHHH
Confidence 347889975 999999999987743 466676532 22355543 33 5899999999999 99977553 6789
Q ss_pred HHHHHhHhccccc
Q 008584 78 LHCCSIFLGMTDT 90 (560)
Q Consensus 78 L~cAAe~LqMte~ 90 (560)
++.-|+|.++++.
T Consensus 80 ~~~Ea~fy~i~~~ 92 (115)
T 3kvt_A 80 FEEELEFWGLDSN 92 (115)
T ss_dssp HHHHHHHHTCCGG
T ss_pred HHHHHHHhCCChH
Confidence 9999999999974
No 32
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=90.90 E-value=0.21 Score=43.22 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=56.3
Q ss_pred EEEEecCceeEechHHHHhhcCH-HHHHhh----cccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChh-hHHHHHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSE-RLKKII----KQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVS-NVSILHC 80 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~-yfr~lf----~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~-NV~~L~c 80 (560)
|+|.|+| +.|...+..|....+ .|.++- .......+-+. =+ |+.|+.|++|.-+ |++.+.++ .+..++.
T Consensus 2 V~LNVGG-~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~~FiD-Rd--p~~F~~ILnflR~-g~l~~p~~~~~~~l~~ 76 (105)
T 1nn7_A 2 IVLNVSG-TRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFD-RD--PDIFRHILNFYRT-GKLHYPRHECISAYDE 76 (105)
T ss_dssp EEEEETT-EEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEEC-SC--TTTHHHHHHHHHH-SCBCCCTTSCHHHHHH
T ss_pred EEEEECC-EEEEEeHHHHhcCCCccccccCCcccccCCCCcEEEe-CC--cHHHHHHHHHHhc-CCCCCCCCcCHHHHHH
Confidence 7899976 999999999976543 122210 01112355543 33 5899999999999 99876543 5899999
Q ss_pred HHhHhccccc
Q 008584 81 CSIFLGMTDT 90 (560)
Q Consensus 81 AAe~LqMte~ 90 (560)
-|+|.++++.
T Consensus 77 Ea~fy~i~~l 86 (105)
T 1nn7_A 77 ELAFFGLIPE 86 (105)
T ss_dssp HHHHHTCCSC
T ss_pred HHHHcCCCHH
Confidence 9999999974
No 33
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=90.60 E-value=0.3 Score=43.57 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=55.8
Q ss_pred EEEEecCceeEechHHHHhhcCHHH-HH----hhcccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChh-hHHHHHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSERL-KK----IIKQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVS-NVSILHC 80 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~yf-r~----lf~e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~-NV~~L~c 80 (560)
|+|.|+| ..|..-+..|...-+-+ .+ .+.......+-| |= .|+.|+.|++|.-+ |++.+.++ .+..++.
T Consensus 15 V~LNVGG-~~F~t~~~TL~~~p~S~L~~~~~~~~~~~~~g~~Fi-DR--dp~~F~~ILnflR~-G~l~~p~~~~~~~l~~ 89 (124)
T 1s1g_A 15 IVLNVSG-RRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFF-DR--DPEVFRCVLNFYRT-GKLHYPRYECISAYDD 89 (124)
T ss_dssp EEEEETT-EEEEEEHHHHTTSTTSSTTSSGGGGTBCSSSCSEEE-CS--CHHHHHHHHHHHHH-SCBCCCTTSCHHHHHH
T ss_pred EEEEeCC-EEEEEeHHHHhcCCCceecccCCcccccCCCCcEEE-cC--ChHHHHHHHHHHhc-CCCCCCCCcCHHHHHH
Confidence 6789975 99999999887653321 11 011112234544 33 37999999999999 99886543 5899999
Q ss_pred HHhHhccccc
Q 008584 81 CSIFLGMTDT 90 (560)
Q Consensus 81 AAe~LqMte~ 90 (560)
-|+|.++++.
T Consensus 90 Ea~fy~i~~l 99 (124)
T 1s1g_A 90 ELAFYGILPE 99 (124)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHcCCChH
Confidence 9999999973
No 34
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=89.89 E-value=0.76 Score=39.44 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=56.7
Q ss_pred EEEEecCceeEechHHHHhhcCH-HHHHhhcc-----cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChh-hHHHHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSE-RLKKIIKQ-----ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVS-NVSILH 79 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~-yfr~lf~e-----~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~-NV~~L~ 79 (560)
|+|.|+| +.|...+..|...-+ .|.+|+.. ....++-+. =. |+.|+.|++|.-++|++.+.++ .+..++
T Consensus 3 v~LNVGG-~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD-Rd--p~~F~~ILnflR~~G~l~~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSG-LRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD-RN--RPSFDAILYFYQSGGRLRRPVNVPLDVFS 78 (100)
T ss_dssp EEEEETT-EEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC-SC--STTHHHHHHHHHTTSCCCCCTTSCHHHHH
T ss_pred EEEEECC-EEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc-CC--hHHHHHHHHHHhcCCcccCCCCCCHHHHH
Confidence 6889976 999999999976532 34445542 223456553 23 5899999999985368765433 578899
Q ss_pred HHHhHhcccc
Q 008584 80 CCSIFLGMTD 89 (560)
Q Consensus 80 cAAe~LqMte 89 (560)
.-|+|.++++
T Consensus 79 ~Ea~fy~i~~ 88 (100)
T 1t1d_A 79 EEIKFYELGE 88 (100)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHcCCCH
Confidence 9999999986
No 35
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=88.62 E-value=0.34 Score=44.19 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=56.5
Q ss_pred cEEEEecCceeEechHHHHhhcCHHHHHhhcc--------cCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChh-hHH
Q 008584 6 DIQIHVNGHQTFFLNEQTITKYSERLKKIIKQ--------ESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVS-NVS 76 (560)
Q Consensus 6 Dv~v~V~g~~~F~lHK~~Las~S~yfr~lf~e--------~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~-NV~ 76 (560)
=|+|.|+| +.|...+..|...-+- |+.. .....+-| |= .|+.|+.|++|.-+ |++.+..+ .+.
T Consensus 36 ~V~LNVGG-~~F~T~~~TL~~~P~S---~L~~~~~~~~~~~~~g~yFi-DR--dp~~F~~ILnflR~-G~l~~p~~~~~~ 107 (140)
T 2nz0_B 36 LIVLNVSG-RRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFF-DR--DPEVFRCVLNFYRT-GKLHYPRYECIS 107 (140)
T ss_dssp EEEEEETT-EEEEEEHHHHHTCTTS---TTTSGGGGGSEETTTTEEEE-CS--CHHHHHHHHHHHHH-SSBCCCTTSCHH
T ss_pred EEEEEECC-EEEEeeHHHHhcCCCe---eecccCCcccccCCCCeEEE-eC--CcHHHHHHHHHHhc-CCcCCCCCcCHH
Confidence 36789975 9999999999765432 2221 12235544 33 37999999999999 99886543 589
Q ss_pred HHHHHHhHhccccc
Q 008584 77 ILHCCSIFLGMTDT 90 (560)
Q Consensus 77 ~L~cAAe~LqMte~ 90 (560)
.++.-|+|.++++.
T Consensus 108 ~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 108 AYDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHHTCCGG
T ss_pred HHHHHHHHcCCChH
Confidence 99999999999973
No 36
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=84.85 E-value=1 Score=33.92 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhcc
Q 008584 518 NENVRLNLQTMQRRVRELEEVCREMKGHMHKLVR 551 (560)
Q Consensus 518 n~~Lr~~l~~m~~rv~eLEkec~~mk~~~~k~~~ 551 (560)
...||.--+..=+||.+||.-|..+.|||+++.+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 4567777788899999999999999999998865
No 37
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.02 E-value=2.9 Score=31.98 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHHHHhHHhh
Q 008584 515 SGENENVRLNLQTMQRRVRELEEVCREMKGHMHK 548 (560)
Q Consensus 515 ~ren~~Lr~~l~~m~~rv~eLEkec~~mk~~~~k 548 (560)
.-|.+.||.|++.+|.|+.+|.+++...+..+++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999987764
No 38
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=72.73 E-value=1.2 Score=29.18 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.6
Q ss_pred hhHHHHHHHHhHhcccc
Q 008584 73 SNVSILHCCSIFLGMTD 89 (560)
Q Consensus 73 ~NV~~L~cAAe~LqMte 89 (560)
.||+.|+.||+||+=-|
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 49999999999998543
No 39
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=71.79 E-value=5 Score=30.97 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhcc
Q 008584 519 ENVRLNLQTMQRRVRELEEVCREMKGHMHKLVR 551 (560)
Q Consensus 519 ~~Lr~~l~~m~~rv~eLEkec~~mk~~~~k~~~ 551 (560)
..||.-=...-.+|.+||-.|..|-|||+++.|
T Consensus 14 ~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 14 LRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433445668999999999999999999875
No 40
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=69.97 E-value=5.5 Score=30.23 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=33.5
Q ss_pred cccchhHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhc
Q 008584 513 RFSGENENVRLNLQTMQRRVRELEEVCREMKGHMHKLV 550 (560)
Q Consensus 513 ~~~ren~~Lr~~l~~m~~rv~eLEkec~~mk~~~~k~~ 550 (560)
.+..||-.||.|++.=...++.||.|-+.||..+..+.
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 36789999999999999999999999999998776653
No 41
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=57.82 E-value=9.2 Score=32.54 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHh
Q 008584 523 LNLQTMQRRVRELEEVCREMKGHMH 547 (560)
Q Consensus 523 ~~l~~m~~rv~eLEkec~~mk~~~~ 547 (560)
.||+.||..|.|||..+..||+..+
T Consensus 50 ~Emq~Ir~tvyeLE~~h~kmKq~YE 74 (92)
T 3vp9_A 50 AEMQQIRNTVYERELTHRKMKDAYE 74 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999997443
No 42
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=50.11 E-value=15 Score=30.48 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHHHHhcCCCCCcccchhhHHHHHHhhhhhhhhc
Q 008584 337 GVYDVNLVIRLIRIFVNSNSSNSDLVGSQKLKKFGRLIDKYLGEI 381 (560)
Q Consensus 337 ~~yDvd~V~ril~~Fl~~~~~~~~~~~~~~l~~VakLvD~YLaEi 381 (560)
..++.+++.||+..+..... ...+...+..+|+++|-|..|.
T Consensus 7 ~~~~~~lI~ril~~~f~~~k---trI~~dAl~l~aeyl~iFV~EA 48 (81)
T 3b0b_C 7 GGFRKETVERLLRLHFRDGR---TRVNGDALLLMAELLKVFVREA 48 (81)
T ss_dssp CCCCHHHHHHHHHHHCCSTT---CEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCc---ccccHHHHHHHHHHHHHHHHHH
Confidence 45999999999999876542 2346678999999999999884
No 43
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=46.68 E-value=12 Score=32.64 Aligned_cols=33 Identities=6% Similarity=-0.008 Sum_probs=25.7
Q ss_pred hccCCCCCChhHHHHHHHhcCCcccccCcchhHHHHHHHhhCCC
Q 008584 380 EISPDQKLTVPKFLGVAESLPDSARECFDGVYRAVDIYLESHPT 423 (560)
Q Consensus 380 EiA~D~nL~~~KF~~Lae~lPd~aR~~~DgLYrAIDiYLk~Hp~ 423 (560)
|...|.+.+|.++.+.+ .++++|||-||-+||.
T Consensus 90 e~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 90 EKVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp EESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred EECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 55677888888886654 7889999999999983
No 44
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.65 E-value=29 Score=29.13 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=32.4
Q ss_pred CccccChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhh
Q 008584 66 GRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMF 109 (560)
Q Consensus 66 g~i~it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v 109 (560)
+.=.|+++|...++..|+.++.++ |.++|..|+.++.
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~-------L~~~a~~fi~~nF 40 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPE-------LYTAAKHCAKTHL 40 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHH-------HHHHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHH
Confidence 344689999999999999998886 9999999998765
No 45
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=35.69 E-value=39 Score=27.57 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=28.4
Q ss_pred ccchhHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 008584 514 FSGENENVRLNLQTMQRRVRELEEVCREMKGH 545 (560)
Q Consensus 514 ~~ren~~Lr~~l~~m~~rv~eLEkec~~mk~~ 545 (560)
++.|-+.||..+...-.|+.+||.|+.-.|+-
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677999999999999999999999999864
No 46
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=35.50 E-value=43 Score=29.60 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCccccChhhHHHHHHHHhHhccccccCCcchHHHHHHHHHHhhh
Q 008584 53 TGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMF 109 (560)
Q Consensus 53 e~Felv~~FcYg~g~i~it~~NV~~L~cAAe~LqMte~~~~~~NL~~~~e~FL~~~v 109 (560)
+..+.+.+|.-. .++++|+..++..|+..+.++ |.+.|..|+.++.
T Consensus 119 ~l~~~c~~~l~~----~l~~~n~~~~~~~A~~~~~~~-------L~~~~~~~i~~~~ 164 (172)
T 3htm_A 119 RLKVMCEDALCS----NLSVENAAEILILADLHSADQ-------LKTQAVDFINYHA 164 (172)
T ss_dssp HHHHHHHHHHHH----TCCTTTHHHHHHHHHHTTCHH-------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCcHH-------HHHHHHHHHHHHH
Confidence 444555555555 589999999999999999886 9999999998865
No 47
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=28.61 E-value=63 Score=34.91 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=54.9
Q ss_pred EEEEecCceeEechHHHHhhcCHH-HHHhhc-----ccCCCeEEecCCCCCHHHHHHHHHHHhcCCccccChh-hHHHHH
Q 008584 7 IQIHVNGHQTFFLNEQTITKYSER-LKKIIK-----QESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVS-NVSILH 79 (560)
Q Consensus 7 v~v~V~g~~~F~lHK~~Las~S~y-fr~lf~-----e~~~~~i~L~d~pgG~e~Felv~~FcYg~g~i~it~~-NV~~L~ 79 (560)
|+|.|+| ..|...+..|...-+- +-+++. .....++-+ | -.|+.|+.+++|..++|++.+..+ .+..+.
T Consensus 54 v~lNVgG-~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-D--R~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~ 129 (514)
T 2r9r_B 54 VVINISG-LRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-D--RNRPSFDAILYYYQSGGRLRRPVNVPLDIFS 129 (514)
T ss_dssp EEEEETT-EEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-C--SCHHHHHHHHHHHHHTSCCCCCTTSCHHHHH
T ss_pred EEEEeCC-EEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-c--CChHHHHHHHHHHhcCCccccCCcccHHHHH
Confidence 5779975 9999999988654321 111222 122345554 2 337999999999997578765433 567889
Q ss_pred HHHhHhccccc
Q 008584 80 CCSIFLGMTDT 90 (560)
Q Consensus 80 cAAe~LqMte~ 90 (560)
.-|+|.++.+.
T Consensus 130 ~E~~f~~i~~~ 140 (514)
T 2r9r_B 130 EEIRFYELGEE 140 (514)
T ss_dssp HHHHHTTCCHH
T ss_pred HHHHhcCCCHH
Confidence 99999999873
No 48
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=27.90 E-value=37 Score=28.31 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=33.0
Q ss_pred ccchHHHHHHHHHHHhcCCCCCcccchhhHHHHHHhhhhhhhhc
Q 008584 338 VYDVNLVIRLIRIFVNSNSSNSDLVGSQKLKKFGRLIDKYLGEI 381 (560)
Q Consensus 338 ~yDvd~V~ril~~Fl~~~~~~~~~~~~~~l~~VakLvD~YLaEi 381 (560)
.+..++|.||+..++..+. -..+...+..+++++|-|..|.
T Consensus 12 ~i~~~li~ril~~~F~~~k---TkIs~dAl~l~aeyl~iFV~EA 52 (84)
T 4dra_E 12 GFRKELVSRLLHLHFKDDK---TKVSGDALQLMVELLKVFVVEA 52 (84)
T ss_dssp CCCHHHHHHHHHTTCSSTT---CEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHHHHHHHH
Confidence 4999999999998876542 2345678999999999999874
No 49
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.31 E-value=38 Score=25.76 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=25.3
Q ss_pred cccccchhHHHHHHHHHHHhHHHHHHHHH
Q 008584 511 TERFSGENENVRLNLQTMQRRVRELEEVC 539 (560)
Q Consensus 511 ~~~~~ren~~Lr~~l~~m~~rv~eLEkec 539 (560)
.+.+.+||++||..++.++.++.||.+..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999988653
No 50
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.64 E-value=89 Score=24.27 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHHhHHHHHHHHHHHHHhHHh
Q 008584 515 SGENENVRLNLQTMQRRVRELEEVCREMKGHMH 547 (560)
Q Consensus 515 ~ren~~Lr~~l~~m~~rv~eLEkec~~mk~~~~ 547 (560)
..+.++|+.+-+.++.++..|++|...+|+-|.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666677777777777777776554
No 51
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=23.71 E-value=85 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHhhh
Q 008584 521 VRLNLQTMQRRVRELEEVCREMKGHMHKL 549 (560)
Q Consensus 521 Lr~~l~~m~~rv~eLEkec~~mk~~~~k~ 549 (560)
|..|.+..+..+.+||.+...+|++|+..
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~q 31 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQ 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888887777777654
No 52
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.90 E-value=97 Score=22.95 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhHH
Q 008584 534 ELEEVCREMKGHM 546 (560)
Q Consensus 534 eLEkec~~mk~~~ 546 (560)
|+-+|...||+||
T Consensus 19 E~RkElqK~K~EI 31 (45)
T 1use_A 19 EVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5556666666654
No 53
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.61 E-value=1e+02 Score=25.92 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=28.5
Q ss_pred ccchhHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhh
Q 008584 514 FSGENENVRLNLQTMQRRVRELEEVCREMKGHMHKL 549 (560)
Q Consensus 514 ~~ren~~Lr~~l~~m~~rv~eLEkec~~mk~~~~k~ 549 (560)
+..++..|..+++.++....++.+|...||+..+.+
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455777888888888888888888888888877765
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.37 E-value=86 Score=26.94 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=10.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhHH
Q 008584 525 LQTMQRRVRELEEVCREMKGHM 546 (560)
Q Consensus 525 l~~m~~rv~eLEkec~~mk~~~ 546 (560)
++..+.++.+||+|+..+++++
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444444
Done!