BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008585
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 8/198 (4%)
Query: 196 SNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVES-GSTVG 253
+++ LV+LLT+T +++ + +A S +V G + L++L+ S S V
Sbjct: 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVR 312
KE A S E +AIV GGV L+++ + DS Q AA L NI++ P E
Sbjct: 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR---SLLA 369
+ + + G V V++KLL KE AA L N+ + + +++V GG+ LL
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKE-AARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 370 YLDGPLPQESAVGALRNL 387
D + +E+A AL N+
Sbjct: 181 STDSEVQKEAA-RALANI 197
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 12/236 (5%)
Query: 242 LIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
L++L+ S + +++A L + S A +AIV GGV L+++ + DS Q AA
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 301 TLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359
L NI++ P E + + + G V V++KLL KE AA L N+ + + +++V
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE-AARALANIASGPDEAIKAIV 125
Query: 360 SEGGIR---SLLAYLDGPLPQESAVGALRNLVGSVSQEV--LISLGFFPRLVHVLKXXXX 414
GG+ LL D + +E+A AL N+ + + ++ G LV +L
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAA-RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 415 XXXXXXXXXXCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468
+ + ++ +K +V +AG +L KLL + + V++ A +A+ ++
Sbjct: 185 EVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 45/258 (17%)
Query: 280 VRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKE 338
V L+++ + DS +Q AA L I++ P + + + G V V++KLL KE
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 339 YAAECLQNLTASNENLRRSVVSEGGIR---SLLAYLDGPLPQESAVGALRNLVGSVSQEV 395
AA L N+ + + +++V GG+ LL D + +E+A
Sbjct: 64 -AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA-------------RA 109
Query: 396 LISLGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPN 455
L ++ P E K + +AG +L+KLL + +
Sbjct: 110 LANIASGPD---------------------------EAIKAIVDAGGVEVLVKLLTSTDS 142
Query: 456 SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515
V++ AA+A++++ + P + D V LV+LL + K+ A A S
Sbjct: 143 EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT 202
Query: 516 KCKKLMISYGAIGYLKKL 533
K ++ G + L+KL
Sbjct: 203 SAIKAIVDAGGVEVLQKL 220
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 186 EKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE--NWLVSEGVLPPLI 243
++ + A++ + LV+LLT+T ++++ + ++A SG E +V G + L+
Sbjct: 118 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SGPDEAIKAIVDAGGVEVLV 176
Query: 244 RLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL 302
+L+ S S V KE A S +AIV GGV L ++ + DS Q A L
Sbjct: 177 KLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236
Query: 303 KNI 305
+NI
Sbjct: 237 ENI 239
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 38/325 (11%)
Query: 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI--VGHGGVRP-LIEICQTGDSVS- 294
LP +I V S + +AT ++L +S E + I V GV P ++ D
Sbjct: 38 LPAMIGGVYSDDNNLQLEATTQFRKL-LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGS-----KEYAAECLQNLT 348
Q AA L NI S E +++ + G V + +KLL GS +E A L N+
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------GSSSDDVREQAVWALGNVA 150
Query: 349 ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS-----------QEVLI 397
+ R V++ G + LLA L+ + + + LRN ++S ++
Sbjct: 151 GDSPKCRDLVLANGALLPLLAQLN----EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 206
Query: 398 SLGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSV 457
+L RL+H T+ +++ ++ EAG P L++LL SV
Sbjct: 207 ALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHPSPSV 264
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A + + ++VT + D +++P L+ LL + + + KK A +++++ K
Sbjct: 265 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 324
Query: 518 K-KLMISYGAIGYLKKL---SEMDI 538
+ + +I+ G IG L L +E DI
Sbjct: 325 QIQAVINAGIIGPLVNLLQTAEFDI 349
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 9/197 (4%)
Query: 345 QNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQ--ESAVGALRNLVGSVSQEV--LISLG 400
Q L+ NE ++ +V+ G + +L+ L P Q + A+ AL N+ ++++ +I G
Sbjct: 38 QILSDGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 401 FFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSVRE 459
P LV +L + + E + V +AG P L++LL + + +
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 460 VAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK 519
A A+S++ + + D ++P LVQLL SP + A+ L++++ +K
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 215
Query: 520 LMISYGAIGYLKKLSEM 536
+ G L+KL ++
Sbjct: 216 QAVKEA--GALEKLEQL 230
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 182 MKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-NWLVSEGVLP 240
+ + + + AV+ + ALVQLL++ + +I ++ + + ++A G+ + ++ G LP
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99
Query: 241 PLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299
L++L+ S + ++A +L + S E +A++ G + L+++ + + A
Sbjct: 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159
Query: 300 CTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT--ASNENLRR 356
L NI S E Q + + G + +++LL +++ E L L+ AS N ++
Sbjct: 160 WALSNIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQK 215
Query: 357 SVVSEGG 363
V E G
Sbjct: 216 QAVKEAG 222
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 368 LAYLDGPLPQESAVGALRNLVGSVSQ----EVLISLGFFPRLVHVLKXXXXXXXXXXXXX 423
+ + P Q SA R L+ EV+ + G R V LK
Sbjct: 28 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 87
Query: 424 XCRVCTSAE--MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481
S ++V +AG P+ I+LL ++ V+E A A+ ++ CR+ D
Sbjct: 88 VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147
Query: 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASL----SPSKKCKKLMISYGAIGYLKKLSEMD 537
+P L+QL + T + AV L++L SP + K+ + +L +S+ D
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207
Query: 538 I 538
+
Sbjct: 208 V 208
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 38/325 (11%)
Query: 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI--VGHGGVRP-LIEICQTGDSVS- 294
LP +I V S + +AT ++L +S E + I V GV P ++ D
Sbjct: 76 LPAMIGGVYSDDNNLQLEATTQFRKL-LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 134
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGS-----KEYAAECLQNLT 348
Q AA L NI S E +++ + G V + +KLL GS +E A L N+
Sbjct: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------GSSSDDVREQAVWALGNVA 188
Query: 349 ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS-----------QEVLI 397
+ R V++ G + LLA L+ + + + LRN ++S ++
Sbjct: 189 GDSPKCRDLVLANGALLPLLAQLN----EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 244
Query: 398 SLGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSV 457
+L RL+H T+ +++ ++ EAG P L++LL SV
Sbjct: 245 ALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHPSPSV 302
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A + + ++VT + D +++P L+ LL + + + KK A +++++ K
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 518 K-KLMISYGAIGYLKKL---SEMDI 538
+ + +I+ G IG L L +E DI
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDI 387
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 368 LAYLDGPLPQESAVGALRNLVGSVSQ----EVLISLGFFPRLVHVLKXXXXXXXXXXXXX 423
+ + P Q SA R L+ EV+ + G R V LK
Sbjct: 25 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 84
Query: 424 XCRVCTSAE--MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481
S ++V +AG P+ I+LL ++ V+E A A+ ++ CR+ D
Sbjct: 85 VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 144
Query: 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASL----SPSKKCKKLMISYGAIGYLKKLSEMD 537
+P L+QL + T + AV L++L SP + K+ + +L +S+ D
Sbjct: 145 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 204
Query: 538 I 538
+
Sbjct: 205 V 205
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
+ AL + + S + + + +C L E +V EG + L+R+ G+ GK A
Sbjct: 500 LCALAKTESHNSQELIARVLNAVCGLKE---LRGKVVQEGGVKALLRMALEGTEKGKRHA 556
Query: 258 TISLQRLSMSAEMARAIVGHGG---VRPLIEICQTG-DSVSQAAAACTLKNISAVPE-VR 312
T +L R+ ++ + G +RPL+ + Q ++ + L N++++ E VR
Sbjct: 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616
Query: 313 Q-MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355
Q ++ E+G+ + L++ + L AA+CL NL S + ++
Sbjct: 617 QRIIKEQGVSKIEYYLMEDHLYLTRA--AAQCLCNLVMSEDVIK 658
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 102/257 (39%), Gaps = 15/257 (5%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL E A L N+
Sbjct: 69 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSV 127
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQ---------EVLISLGFFPR 404
R V+ G + LLA L P A G LRNL ++S + P
Sbjct: 128 FRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPT 187
Query: 405 LVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQ 463
LV +L + E +V + G P L+KLL A + A +
Sbjct: 188 LVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALR 247
Query: 464 AISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCK-KLMI 522
AI ++VT +V D ++ LL +P+ +K A +++++ ++ + + ++
Sbjct: 248 AIGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVV 306
Query: 523 SYGAIGYL-KKLSEMDI 538
++G + +L LS+ D
Sbjct: 307 NHGLVPFLVSVLSKADF 323
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL E A L N+
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSA 176
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 234
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 235 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 290
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 349
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 350 QIQQVVNHGLVPFL 363
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL E A L N+
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSA 162
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 163 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 220
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 221 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 276
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 277 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 335
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 336 QIQQVVNHGLVPFL 349
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL E A L N+
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSA 176
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 234
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 235 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 290
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 349
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 350 QIQQVVNHGLVPFL 363
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL E A L N+
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSA 160
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 161 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 218
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 219 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 274
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 275 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 333
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 334 QIQQVVNHGLVPFL 347
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL E A L N+
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSA 176
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 234
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 235 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 290
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 349
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 350 QIQQVVNHGLVPFL 363
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 182 MKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-NWLVSEGVLP 240
+ + + + AV+ + ALVQLL++ + +I ++ + + ++A G+ + ++ G LP
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99
Query: 241 PLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299
L++L+ S + ++A +L + S E +A++ G + L+++ + + A
Sbjct: 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159
Query: 300 CTLKNI-SAVPEVRQMLAEEGIVSVMIKL 327
L NI S E +Q + E G + + +L
Sbjct: 160 WALSNIASGGNEQKQAVKEAGALEKLEQL 188
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 394 EVLISLGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEA 452
+ +I G P LV +L + + E + V +AG P L++LL +
Sbjct: 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 107
Query: 453 KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL- 511
+ + A A+S++ + + D ++P LVQLL SP + A+ L+++
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIA 166
Query: 512 SPSKKCKKLMISYGAIGYLKKL 533
S + K+ + GA+ L++L
Sbjct: 167 SGGNEQKQAVKEAGALEKLEQL 188
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL S E A L N+
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS-EQAVWALGNIAGDGSA 125
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 183
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 184 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 239
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 240 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 298
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 299 QIQQVVNHGLVPFL 312
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL S E A L N+
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS-EQAVWALGNIAGDGSA 125
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 183
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 184 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 239
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 240 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 298
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 299 QIQQVVNHGLVPFL 312
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL E A L N+
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSA 126
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 184
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 185 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 240
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 241 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 299
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 300 QIQQVVNHGLVPFL 313
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL E A L N+
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSA 132
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 190
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 191 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 246
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 247 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 305
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 306 QIQQVVNHGLVPFL 319
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL S E A L N+
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS-EQAVWALGNIAGDGSA 126
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 184
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 185 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 240
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 241 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 299
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 300 QIQQVVNHGLVPFL 313
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL S E A L N+
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS-EQAVWALGNIAGDGSA 121
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 179
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 180 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 235
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 236 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 294
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 295 QIQQVVNHGLVPFL 308
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL S E A L N+
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS-EQAVWALGNIAGDGSA 126
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 184
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 185 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 240
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 241 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 299
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 300 QIQQVVNHGLVPFL 313
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL E A L N+
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSA 152
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 153 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 210
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 211 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 266
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 267 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 325
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 326 QIQQVVNHGLVPFL 339
>pdb|2FV2|A Chain A, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
pdb|2FV2|B Chain B, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
pdb|2FV2|C Chain C, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
pdb|2FV2|D Chain D, Crystal Structure Analysis Of Human Rcd-1 Conserved Region
Length = 268
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 212 IREKTVTVICSLAESGSCE--NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE 269
+R ++ VI +L ++ E N+L++ ++P +R++ESGS + K AT LQ++
Sbjct: 118 LRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI----- 172
Query: 270 MARAIVGHGGVRPLIEICQTGDSVSQAA 297
++ G L ICQT + S A
Sbjct: 173 ----LLDDTG---LAYICQTYERFSHVA 193
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 187 KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-NWLVSEGVLPPLIRL 245
+ + AV+ + ALVQLL++ + +I ++ + + ++A G+ + ++ G LP L++L
Sbjct: 45 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104
Query: 246 VESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKN 304
+ S + ++A +L + S E +A++ G + L+++ + + A L N
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 305 I-SAVPEVRQMLAEEGIVSVMIKL 327
I S E +Q + E G + + +L
Sbjct: 165 IASGGNEQKQAVKEAGALEKLEQL 188
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 8/175 (4%)
Query: 367 LLAYLDGPLPQE--SAVGALRNLVGSVSQEV--LISLGFFPRLVHVLKXXXXXXXXXXXX 422
++ L+ P QE SA+ L + ++++ +I G P LV +L
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 423 XXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481
+ + E + V +AG P L++LL + + + A A+S++ + + D
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEM 536
++P LVQLL SP + A+ L++++ +K + G L+KL ++
Sbjct: 137 AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEA--GALEKLEQL 188
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL S E A L N+
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS-EQAVWALGNIAGDGSA 121
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 179
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 180 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 235
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 236 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 294
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 295 QIQQVVNHGLVPFL 308
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 26/254 (10%)
Query: 295 QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353
Q +A L NI S E + + + G + I LL S E A L N+ +
Sbjct: 137 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS-EQAVWALGNIAGAGSA 195
Query: 354 LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS---------------QEVLIS 398
R V+ G I LLA L P A G LRNL ++S +++L
Sbjct: 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-- 253
Query: 399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSA-EMKKLVGEAGCTPLLIKLLEAKPNSV 457
P LV +L + E ++V + G P L+KLL A +
Sbjct: 254 ----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 309
Query: 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKC 517
A +AI ++VT + D ++ LL +P+ +K A +++++ ++
Sbjct: 310 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQD 368
Query: 518 K-KLMISYGAIGYL 530
+ + ++++G + +L
Sbjct: 369 QIQQVVNHGLVPFL 382
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 33/188 (17%)
Query: 168 LEAKHKALDSLVEAMKEDEKNVLA-------------------VMGRSNIAALVQLLTAT 208
L+A + L +LV + ++ VLA V+ + + LV+LL AT
Sbjct: 246 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305
Query: 209 SPRIREKTVTVICSLAESGSCENW--LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM 266
I + I ++ +G+ E ++ G L L+ + T +++AT ++ ++
Sbjct: 306 ELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 364
Query: 267 S-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMI 325
+ + +V HG V L+ + D +Q AAA + N ++ G V ++
Sbjct: 365 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS----------GGTVEQIV 414
Query: 326 KLLDCGIL 333
L+ CGI+
Sbjct: 415 YLVHCGII 422
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 172 HKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE- 230
AL L + + + AV+ + ALVQLL++ + +I ++ + + ++A G+ +
Sbjct: 30 QSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89
Query: 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQT 289
++ G LP L++L+ S + ++A +L + S E +A++ G + L+++ +
Sbjct: 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149
Query: 290 GDSVSQAAAACTLKNI-SAVPEVRQMLAEEG 319
+ A L NI S E +Q + E G
Sbjct: 150 PNEQILQEALWALSNIASGGNEQKQAVKEAG 180
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 182 MKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPP 241
+ D N + + + I VQLL ++ I+ V+C LA+ + + +EG P
Sbjct: 447 LARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAP 506
Query: 242 LIRLVESGSTVGKEKATISLQRLS 265
L+ L+ S + A L R+S
Sbjct: 507 LMELLHSRNEGTATYAAAVLFRIS 530
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 12/175 (6%)
Query: 201 LVQLLTATSPRIREKTVTVICSLAESGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATI 259
L +LL P + K ++ L++ + L+ S ++ ++R +++ S + + T
Sbjct: 24 LTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTT 83
Query: 260 S-LQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE- 317
S L LS E AI GG+ L+ + + A TL N+ E +M
Sbjct: 84 SILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRL 143
Query: 318 -EGIVSVMIKLLDCGILLGSKEYAA---ECLQNLTASNENLRRSVVSEGGIRSLL 368
+G+ M+ LL+ + ++ A +CLQ L N+ + +++ GG ++L+
Sbjct: 144 ADGL-QKMVPLLNKN----NPKFLAITTDCLQLLAYGNQESKLIILANGGPQALV 193
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 141 VAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAA 200
V STD E + TRE L ++ + H + + L L+ A K+D K + V A
Sbjct: 89 VVVDSTDRERIS--VTREELYKM-LAHEDLRKAGL--LIFANKQDVKECMTV------AE 137
Query: 201 LVQLLTATSPRIREKTVTVICSLAESGSCE--NWLVS 235
+ Q L TS + + + C+L G C+ W++S
Sbjct: 138 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 174
>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|B Chain B, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|C Chain C, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|D Chain D, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
Length = 267
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 260 SLQRLSMSAEMARA----IVGHGGVRPLIEICQTGDSVSQAAAACTLK 303
+++RL +AE A +V + G+ PL I +TGD+V A LK
Sbjct: 91 AVRRLFATAEEAFGGVDVLVNNAGIXPLTTIAETGDAVFDRVIAVNLK 138
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 141 VAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAA 200
V STD E + TRE L ++ + H + + L L+ A K+D K + V A
Sbjct: 95 VVVDSTDRERIS--VTREELYKM-LAHEDLRKAGL--LIFANKQDVKECMTV------AE 143
Query: 201 LVQLLTATSPRIREKTVTVICSLAESGSCE--NWLVS 235
+ Q L TS + + + C+L G C+ W++S
Sbjct: 144 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 180
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 141 VAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAA 200
V STD E + TRE L ++ + H + + L L+ A K+D K + V A
Sbjct: 94 VVVDSTDRERIS--VTREELYKM-LAHEDLRKAGL--LIFANKQDVKECMTV------AE 142
Query: 201 LVQLLTATSPRIREKTVTVICSLAESGSCE--NWLVS 235
+ Q L TS + + + C+L G C+ W++S
Sbjct: 143 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,742,767
Number of Sequences: 62578
Number of extensions: 491722
Number of successful extensions: 1767
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1544
Number of HSP's gapped (non-prelim): 187
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)