Query 008585
Match_columns 560
No_of_seqs 391 out of 2304
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 14:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1E-33 2.2E-38 325.5 45.8 387 155-543 59-548 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.6E-33 3.5E-38 323.9 43.8 391 152-544 11-507 (2102)
3 KOG0166 Karyopherin (importin) 100.0 1.1E-31 2.5E-36 271.9 36.6 385 156-542 68-474 (514)
4 KOG0166 Karyopherin (importin) 100.0 1.7E-31 3.7E-36 270.6 30.0 359 153-513 108-486 (514)
5 KOG4224 Armadillo repeat prote 100.0 5.4E-32 1.2E-36 256.3 24.4 381 153-538 84-477 (550)
6 COG5064 SRP1 Karyopherin (impo 100.0 8.6E-30 1.9E-34 239.5 28.4 396 150-549 67-495 (526)
7 KOG4224 Armadillo repeat prote 100.0 4.8E-30 1.1E-34 243.1 19.7 367 165-539 58-431 (550)
8 COG5064 SRP1 Karyopherin (impo 100.0 1.9E-29 4.2E-34 237.1 23.4 357 153-512 113-495 (526)
9 PF05804 KAP: Kinesin-associat 99.9 2.7E-23 5.8E-28 222.7 39.8 368 171-546 266-641 (708)
10 PF05804 KAP: Kinesin-associat 99.9 5.4E-22 1.2E-26 212.7 37.6 361 153-523 289-660 (708)
11 KOG4199 Uncharacterized conser 99.8 3.4E-18 7.3E-23 161.5 28.4 310 163-478 116-452 (461)
12 KOG1048 Neural adherens juncti 99.8 1.5E-18 3.3E-23 181.9 26.9 373 154-530 233-701 (717)
13 KOG1048 Neural adherens juncti 99.8 2.6E-18 5.6E-23 180.2 26.0 338 198-538 235-667 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 5.4E-17 1.2E-21 172.6 36.5 367 159-532 43-440 (503)
15 KOG4199 Uncharacterized conser 99.7 2E-14 4.3E-19 136.3 31.9 321 194-520 102-451 (461)
16 KOG2122 Beta-catenin-binding p 99.7 4.7E-16 1E-20 169.3 21.6 318 155-472 236-603 (2195)
17 PF10508 Proteasom_PSMB: Prote 99.7 1.1E-13 2.5E-18 147.2 36.2 337 152-491 75-441 (503)
18 KOG4500 Rho/Rac GTPase guanine 99.7 1.1E-14 2.5E-19 141.9 23.6 371 164-535 97-500 (604)
19 KOG2122 Beta-catenin-binding p 99.7 1.5E-14 3.3E-19 157.8 23.8 352 158-515 201-603 (2195)
20 KOG1222 Kinesin associated pro 99.6 1.6E-13 3.4E-18 135.7 25.0 405 106-526 259-677 (791)
21 PF04826 Arm_2: Armadillo-like 99.6 2.4E-13 5.3E-18 130.2 20.9 192 192-389 8-205 (254)
22 KOG4500 Rho/Rac GTPase guanine 99.6 9.6E-13 2.1E-17 128.7 24.8 302 192-495 83-414 (604)
23 KOG2171 Karyopherin (importin) 99.6 7E-13 1.5E-17 144.4 26.3 453 42-513 91-594 (1075)
24 PRK09687 putative lyase; Provi 99.5 1.4E-12 3E-17 127.8 22.2 253 154-467 23-279 (280)
25 KOG1222 Kinesin associated pro 99.5 6E-12 1.3E-16 124.6 25.9 319 213-541 280-606 (791)
26 PRK09687 putative lyase; Provi 99.5 8.4E-12 1.8E-16 122.4 22.5 253 196-509 23-278 (280)
27 PF04826 Arm_2: Armadillo-like 99.4 1.5E-11 3.3E-16 117.9 20.4 190 155-349 13-205 (254)
28 cd00256 VATPase_H VATPase_H, r 99.4 1.2E-10 2.5E-15 118.8 27.7 317 154-471 53-426 (429)
29 PRK13800 putative oxidoreducta 99.4 1E-10 2.2E-15 133.4 27.7 272 155-509 622-895 (897)
30 KOG0168 Putative ubiquitin fus 99.3 1.7E-09 3.6E-14 114.2 28.0 376 155-537 168-655 (1051)
31 PRK13800 putative oxidoreducta 99.3 8.2E-10 1.8E-14 126.1 28.0 271 194-546 619-891 (897)
32 cd00020 ARM Armadillo/beta-cat 99.3 7.4E-11 1.6E-15 100.7 14.4 117 232-349 2-120 (120)
33 cd00020 ARM Armadillo/beta-cat 99.3 9.7E-11 2.1E-15 100.0 14.3 116 192-307 3-120 (120)
34 KOG1293 Proteins containing ar 99.2 2.3E-09 5E-14 110.8 24.0 358 157-514 12-534 (678)
35 PF01602 Adaptin_N: Adaptin N 99.2 9.1E-09 2E-13 111.7 28.9 322 159-515 9-335 (526)
36 KOG0946 ER-Golgi vesicle-tethe 99.2 1.4E-07 3E-12 99.4 34.5 324 152-479 20-409 (970)
37 PF01602 Adaptin_N: Adaptin N 99.1 3.5E-09 7.7E-14 114.9 20.8 326 152-513 112-444 (526)
38 KOG0946 ER-Golgi vesicle-tethe 99.1 1.3E-07 2.8E-12 99.6 30.6 321 197-521 23-408 (970)
39 cd00256 VATPase_H VATPase_H, r 99.1 3.9E-08 8.5E-13 100.6 25.3 272 156-428 103-424 (429)
40 PF03224 V-ATPase_H_N: V-ATPas 99.1 3E-09 6.4E-14 106.9 16.6 212 158-370 62-291 (312)
41 KOG2759 Vacuolar H+-ATPase V1 99.1 5.8E-08 1.3E-12 95.9 24.2 317 154-471 65-439 (442)
42 KOG4413 26S proteasome regulat 99.1 5.4E-08 1.2E-12 92.7 22.9 335 196-532 82-459 (524)
43 KOG2023 Nuclear transport rece 99.0 3.7E-08 8E-13 101.8 21.8 330 150-496 170-576 (885)
44 PTZ00429 beta-adaptin; Provisi 99.0 6.7E-07 1.5E-11 98.4 32.8 357 154-549 32-393 (746)
45 KOG1293 Proteins containing ar 99.0 3.4E-07 7.4E-12 95.1 28.2 327 153-480 50-543 (678)
46 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.8E-08 4E-13 101.2 17.4 222 197-419 56-304 (312)
47 KOG0168 Putative ubiquitin fus 99.0 3.5E-08 7.6E-13 104.4 19.3 245 291-538 181-439 (1051)
48 KOG3678 SARM protein (with ste 99.0 3.4E-08 7.3E-13 98.1 17.7 259 272-546 174-444 (832)
49 KOG2160 Armadillo/beta-catenin 99.0 9.1E-08 2E-12 93.4 19.9 184 164-349 93-282 (342)
50 KOG3678 SARM protein (with ste 98.9 1.1E-07 2.3E-12 94.7 19.2 265 191-471 175-453 (832)
51 KOG2171 Karyopherin (importin) 98.9 1.2E-06 2.6E-11 96.7 28.9 345 158-512 83-460 (1075)
52 KOG2160 Armadillo/beta-catenin 98.9 1E-07 2.3E-12 93.0 18.3 182 249-430 95-283 (342)
53 KOG1789 Endocytosis protein RM 98.9 5.7E-07 1.2E-11 97.0 24.9 324 170-495 1741-2142(2235)
54 PTZ00429 beta-adaptin; Provisi 98.9 1.4E-05 3.1E-10 88.0 35.9 290 153-469 139-432 (746)
55 KOG2023 Nuclear transport rece 98.9 6.7E-08 1.5E-12 99.9 15.8 344 106-469 85-504 (885)
56 PF05536 Neurochondrin: Neuroc 98.8 3.9E-06 8.5E-11 89.9 27.5 370 155-532 6-458 (543)
57 KOG2759 Vacuolar H+-ATPase V1 98.7 4.6E-06 9.9E-11 82.8 23.0 270 155-428 115-437 (442)
58 KOG4413 26S proteasome regulat 98.7 1.5E-05 3.3E-10 76.4 23.7 334 156-490 84-459 (524)
59 KOG2973 Uncharacterized conser 98.7 1E-05 2.2E-10 77.1 22.4 292 156-473 5-318 (353)
60 KOG1241 Karyopherin (importin) 98.6 5.1E-06 1.1E-10 87.7 19.9 307 200-512 368-710 (859)
61 KOG2973 Uncharacterized conser 98.6 2.6E-05 5.6E-10 74.4 22.1 288 239-549 5-310 (353)
62 KOG1242 Protein containing ada 98.4 7.5E-05 1.6E-09 77.9 23.7 317 155-494 135-464 (569)
63 TIGR02270 conserved hypothetic 98.4 0.00013 2.8E-09 75.3 24.6 243 156-474 56-300 (410)
64 PF14664 RICTOR_N: Rapamycin-i 98.4 0.00016 3.4E-09 73.9 24.0 290 175-469 4-363 (371)
65 KOG1241 Karyopherin (importin) 98.3 0.00015 3.3E-09 76.9 23.0 333 164-508 227-621 (859)
66 TIGR02270 conserved hypothetic 98.3 0.00015 3.2E-09 75.0 22.6 210 156-430 88-297 (410)
67 KOG0212 Uncharacterized conser 98.3 1.9E-05 4.2E-10 80.8 15.0 331 194-540 82-427 (675)
68 KOG1059 Vesicle coat complex A 98.3 8.6E-05 1.9E-09 78.2 19.6 221 238-480 145-374 (877)
69 KOG1789 Endocytosis protein RM 98.3 0.00059 1.3E-08 74.6 25.9 322 211-537 1740-2142(2235)
70 KOG1060 Vesicle coat complex A 98.2 0.001 2.2E-08 71.0 27.1 293 152-473 69-461 (968)
71 KOG4646 Uncharacterized conser 98.2 1.4E-05 3.1E-10 66.8 10.6 130 198-327 18-149 (173)
72 KOG1062 Vesicle coat complex A 98.1 0.0033 7.1E-08 67.6 28.3 349 149-525 137-561 (866)
73 KOG4646 Uncharacterized conser 98.1 1.3E-05 2.8E-10 67.1 8.2 130 239-369 18-148 (173)
74 COG5215 KAP95 Karyopherin (imp 98.1 0.0011 2.4E-08 68.3 23.2 355 164-532 231-646 (858)
75 KOG1060 Vesicle coat complex A 98.1 0.005 1.1E-07 66.0 28.5 280 156-469 37-349 (968)
76 KOG1061 Vesicle coat complex A 98.1 0.00022 4.8E-09 76.2 18.6 332 152-512 119-452 (734)
77 KOG1062 Vesicle coat complex A 98.1 0.0025 5.5E-08 68.4 26.1 322 158-511 74-449 (866)
78 KOG0212 Uncharacterized conser 98.1 0.001 2.2E-08 68.6 22.2 310 152-469 82-443 (675)
79 COG5240 SEC21 Vesicle coat com 98.0 0.0014 3E-08 67.6 22.4 287 161-479 271-563 (898)
80 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0027 5.8E-08 64.9 24.8 228 238-470 26-269 (371)
81 COG5369 Uncharacterized conser 98.0 2.4E-05 5.1E-10 79.7 9.6 270 190-468 425-739 (743)
82 KOG1517 Guanine nucleotide bin 98.0 0.00023 4.9E-09 77.9 16.1 217 214-430 488-733 (1387)
83 KOG2734 Uncharacterized conser 98.0 0.0036 7.9E-08 62.8 23.1 254 215-469 103-399 (536)
84 COG5215 KAP95 Karyopherin (imp 97.9 0.0019 4E-08 66.8 21.4 303 203-512 373-710 (858)
85 KOG1061 Vesicle coat complex A 97.9 0.0005 1.1E-08 73.6 17.9 144 151-307 46-189 (734)
86 KOG1077 Vesicle coat complex A 97.9 0.0082 1.8E-07 63.6 25.2 351 152-527 109-502 (938)
87 COG5181 HSH155 U2 snRNP splice 97.9 0.0003 6.6E-09 72.9 14.5 277 197-495 605-891 (975)
88 PF00514 Arm: Armadillo/beta-c 97.9 2.2E-05 4.8E-10 52.7 4.3 41 267-307 1-41 (41)
89 COG1413 FOG: HEAT repeat [Ener 97.9 0.004 8.6E-08 63.4 23.0 245 155-469 44-303 (335)
90 KOG1824 TATA-binding protein-i 97.9 0.0031 6.8E-08 68.8 22.3 335 157-515 614-1038(1233)
91 PF00514 Arm: Armadillo/beta-c 97.9 3.4E-05 7.3E-10 51.8 5.1 41 185-225 1-41 (41)
92 KOG2734 Uncharacterized conser 97.8 0.0023 5E-08 64.2 19.5 231 299-533 105-369 (536)
93 KOG0213 Splicing factor 3b, su 97.8 0.00079 1.7E-08 71.3 16.8 276 198-495 801-1086(1172)
94 COG5231 VMA13 Vacuolar H+-ATPa 97.8 0.00082 1.8E-08 64.6 15.3 225 245-469 157-427 (432)
95 KOG0213 Splicing factor 3b, su 97.8 0.00021 4.5E-09 75.5 11.3 258 238-514 800-1066(1172)
96 COG1413 FOG: HEAT repeat [Ener 97.7 0.0018 3.8E-08 66.0 18.0 184 237-469 43-241 (335)
97 KOG1824 TATA-binding protein-i 97.7 0.015 3.4E-07 63.6 25.0 174 282-469 861-1094(1233)
98 PF12348 CLASP_N: CLASP N term 97.7 0.00066 1.4E-08 65.0 13.5 184 164-353 17-210 (228)
99 KOG2259 Uncharacterized conser 97.7 0.0035 7.7E-08 65.9 19.1 246 212-471 174-440 (823)
100 KOG1517 Guanine nucleotide bin 97.7 0.0012 2.5E-08 72.7 16.2 180 170-350 486-672 (1387)
101 KOG1059 Vesicle coat complex A 97.7 0.043 9.2E-07 58.6 27.0 299 152-479 142-451 (877)
102 PF13646 HEAT_2: HEAT repeats; 97.7 0.00012 2.6E-09 58.5 6.7 87 239-345 1-88 (88)
103 PF05536 Neurochondrin: Neuroc 97.7 0.0045 9.7E-08 66.7 20.4 229 238-469 6-260 (543)
104 KOG1242 Protein containing ada 97.7 0.014 3.1E-07 61.3 23.2 335 152-512 94-443 (569)
105 PF13646 HEAT_2: HEAT repeats; 97.6 0.00019 4.1E-09 57.3 6.2 86 402-508 1-87 (88)
106 KOG0915 Uncharacterized conser 97.5 0.025 5.4E-07 65.1 24.2 386 67-469 891-1343(1702)
107 PF10165 Ric8: Guanine nucleot 97.4 0.0071 1.5E-07 63.7 17.8 254 258-515 2-339 (446)
108 PF10165 Ric8: Guanine nucleot 97.3 0.0079 1.7E-07 63.4 16.6 246 185-430 11-338 (446)
109 COG5369 Uncharacterized conser 97.3 0.0011 2.3E-08 68.0 9.5 184 338-522 407-603 (743)
110 KOG0211 Protein phosphatase 2A 97.3 0.013 2.9E-07 64.6 18.5 340 153-510 315-661 (759)
111 KOG1077 Vesicle coat complex A 97.2 0.047 1E-06 58.1 20.4 311 153-483 145-501 (938)
112 KOG3036 Protein involved in ce 97.2 0.02 4.3E-07 53.4 15.4 174 377-550 96-287 (293)
113 smart00185 ARM Armadillo/beta- 97.1 0.0011 2.4E-08 44.1 5.2 40 268-307 2-41 (41)
114 KOG3036 Protein involved in ce 97.1 0.052 1.1E-06 50.7 17.3 171 177-349 101-291 (293)
115 COG5096 Vesicle coat complex, 97.1 0.65 1.4E-05 51.3 28.3 169 163-350 28-196 (757)
116 KOG2259 Uncharacterized conser 97.1 0.0044 9.5E-08 65.2 11.1 252 153-427 196-473 (823)
117 KOG0567 HEAT repeat-containing 97.1 0.047 1E-06 51.6 16.8 220 239-510 38-277 (289)
118 COG5181 HSH155 U2 snRNP splice 97.1 0.0023 5E-08 66.6 8.7 256 238-513 605-870 (975)
119 PF12348 CLASP_N: CLASP N term 97.0 0.0025 5.5E-08 60.9 8.3 175 330-512 18-205 (228)
120 KOG0211 Protein phosphatase 2A 97.0 0.18 3.9E-06 55.9 23.0 308 150-469 232-546 (759)
121 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0016 3.4E-08 46.8 4.9 55 292-347 1-55 (55)
122 KOG1058 Vesicle coat complex C 96.9 0.15 3.3E-06 54.9 20.9 310 158-512 24-345 (948)
123 KOG1078 Vesicle coat complex C 96.9 0.16 3.6E-06 54.9 21.3 138 319-469 391-531 (865)
124 smart00185 ARM Armadillo/beta- 96.9 0.0026 5.6E-08 42.3 5.3 39 187-225 3-41 (41)
125 KOG4151 Myosin assembly protei 96.9 0.022 4.8E-07 61.6 14.3 236 227-468 494-739 (748)
126 KOG1240 Protein kinase contain 96.8 0.1 2.2E-06 59.0 19.3 262 155-430 423-726 (1431)
127 PF13513 HEAT_EZ: HEAT-like re 96.8 0.002 4.3E-08 46.3 4.3 55 251-305 1-55 (55)
128 COG5240 SEC21 Vesicle coat com 96.8 0.24 5.1E-06 51.9 20.3 300 176-512 249-554 (898)
129 COG5096 Vesicle coat complex, 96.8 0.73 1.6E-05 50.9 25.3 142 152-307 53-195 (757)
130 COG5231 VMA13 Vacuolar H+-ATPa 96.7 0.28 6E-06 47.7 19.0 226 203-428 156-427 (432)
131 PF09759 Atx10homo_assoc: Spin 96.7 0.0074 1.6E-07 49.0 7.2 67 294-360 2-70 (102)
132 PF04078 Rcd1: Cell differenti 96.6 0.076 1.7E-06 50.6 14.7 214 335-549 10-257 (262)
133 KOG4535 HEAT and armadillo rep 96.4 0.021 4.5E-07 58.2 9.9 294 168-469 269-602 (728)
134 PF11701 UNC45-central: Myosin 96.4 0.032 7E-07 49.8 10.3 143 321-468 5-157 (157)
135 KOG2611 Neurochondrin/leucine- 96.4 0.15 3.3E-06 52.1 15.7 188 157-349 14-225 (698)
136 KOG0915 Uncharacterized conser 96.4 0.28 6.1E-06 56.9 19.3 395 109-523 859-1318(1702)
137 PF06025 DUF913: Domain of Unk 96.3 0.3 6.4E-06 50.3 18.1 128 233-360 101-243 (379)
138 PF09759 Atx10homo_assoc: Spin 96.3 0.019 4.2E-07 46.6 7.4 64 254-317 3-70 (102)
139 KOG0567 HEAT repeat-containing 96.3 0.36 7.8E-06 45.8 16.6 104 335-468 171-278 (289)
140 PF13764 E3_UbLigase_R4: E3 ub 96.2 1.3 2.8E-05 49.7 23.6 216 192-411 113-386 (802)
141 PF08569 Mo25: Mo25-like; Int 96.2 0.62 1.3E-05 47.0 19.4 206 232-474 71-287 (335)
142 PF04078 Rcd1: Cell differenti 96.2 0.069 1.5E-06 50.9 11.7 143 174-317 70-228 (262)
143 KOG4151 Myosin assembly protei 96.2 0.1 2.2E-06 56.7 14.0 228 267-538 493-725 (748)
144 PF08569 Mo25: Mo25-like; Int 96.2 0.16 3.5E-06 51.1 14.8 222 313-536 70-312 (335)
145 PF11841 DUF3361: Domain of un 96.1 0.15 3.3E-06 45.0 12.3 121 231-352 5-134 (160)
146 KOG1832 HIV-1 Vpr-binding prot 96.0 0.09 1.9E-06 57.4 12.7 344 169-526 368-786 (1516)
147 PF11841 DUF3361: Domain of un 96.0 0.1 2.3E-06 46.0 11.0 119 271-389 4-131 (160)
148 PF05004 IFRD: Interferon-rela 96.0 0.27 5.9E-06 49.2 15.6 185 281-469 46-256 (309)
149 KOG1058 Vesicle coat complex C 96.0 3.1 6.7E-05 45.4 25.4 318 153-515 133-465 (948)
150 KOG1943 Beta-tubulin folding c 96.0 3.2 6.8E-05 47.1 24.5 305 153-469 340-704 (1133)
151 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.031 6.8E-07 45.3 7.2 90 214-304 4-93 (97)
152 KOG1240 Protein kinase contain 95.8 0.47 1E-05 54.0 17.5 294 198-513 424-725 (1431)
153 PF12460 MMS19_C: RNAPII trans 95.8 3 6.5E-05 43.7 30.5 337 157-515 2-396 (415)
154 PF05004 IFRD: Interferon-rela 95.7 1.6 3.4E-05 43.8 19.7 193 150-348 39-256 (309)
155 PF12717 Cnd1: non-SMC mitotic 95.7 1.2 2.6E-05 40.7 17.5 93 167-267 1-93 (178)
156 PRK14707 hypothetical protein; 95.7 5.7 0.00012 48.4 26.0 368 165-538 133-513 (2710)
157 PF12755 Vac14_Fab1_bd: Vacuol 95.7 0.042 9E-07 44.6 6.8 67 277-347 26-94 (97)
158 KOG2274 Predicted importin 9 [ 95.6 2.7 5.9E-05 46.7 21.6 216 209-430 463-690 (1005)
159 PF11698 V-ATPase_H_C: V-ATPas 95.5 0.048 1E-06 45.5 6.7 73 152-224 41-114 (119)
160 PF12719 Cnd3: Nuclear condens 95.5 0.42 9.1E-06 47.7 14.7 158 374-539 41-211 (298)
161 PF04063 DUF383: Domain of unk 95.4 0.12 2.5E-06 47.7 9.5 123 248-372 6-157 (192)
162 KOG2062 26S proteasome regulat 95.3 1.7 3.8E-05 47.1 18.6 159 319-501 519-683 (929)
163 PF11698 V-ATPase_H_C: V-ATPas 95.2 0.028 6E-07 46.9 4.4 71 400-470 43-115 (119)
164 PF08045 CDC14: Cell division 95.2 0.93 2E-05 43.5 15.3 97 253-349 107-207 (257)
165 KOG2274 Predicted importin 9 [ 95.2 1.3 2.8E-05 49.1 17.9 241 249-496 462-721 (1005)
166 PF13764 E3_UbLigase_R4: E3 ub 95.1 2.2 4.8E-05 47.9 20.0 177 274-455 113-333 (802)
167 KOG4535 HEAT and armadillo rep 95.1 0.065 1.4E-06 54.7 7.3 287 210-508 269-598 (728)
168 COG5209 RCD1 Uncharacterized p 95.0 0.47 1E-05 43.8 11.7 147 171-317 116-278 (315)
169 KOG1991 Nuclear transport rece 94.8 8.8 0.00019 43.3 25.7 302 153-469 372-710 (1010)
170 PF12719 Cnd3: Nuclear condens 94.8 1.4 3E-05 43.9 16.2 170 196-373 26-208 (298)
171 KOG1943 Beta-tubulin folding c 94.8 3 6.4E-05 47.3 19.6 247 196-469 341-610 (1133)
172 PF07814 WAPL: Wings apart-lik 94.8 1.1 2.4E-05 46.0 15.7 210 152-362 19-312 (361)
173 PF04063 DUF383: Domain of unk 94.7 0.31 6.7E-06 44.9 10.2 122 208-329 7-157 (192)
174 PF07814 WAPL: Wings apart-lik 94.5 1.6 3.5E-05 44.7 16.1 269 196-471 21-356 (361)
175 PF11707 Npa1: Ribosome 60S bi 94.5 2.4 5.2E-05 42.9 17.1 158 313-472 51-239 (330)
176 KOG2999 Regulator of Rac1, req 94.5 1.5 3.2E-05 46.0 15.2 159 281-440 86-255 (713)
177 KOG3665 ZYG-1-like serine/thre 94.4 3.4 7.4E-05 46.1 19.1 177 260-451 494-677 (699)
178 KOG2611 Neurochondrin/leucine- 94.1 6.5 0.00014 40.8 18.5 184 240-428 14-224 (698)
179 KOG4653 Uncharacterized conser 94.1 1.8 3.9E-05 47.8 15.5 210 287-508 736-959 (982)
180 KOG2999 Regulator of Rac1, req 94.0 5.7 0.00012 41.8 18.2 163 197-360 84-254 (713)
181 PRK14707 hypothetical protein; 94.0 21 0.00044 44.0 28.2 378 165-548 301-692 (2710)
182 KOG2956 CLIP-associating prote 94.0 2.6 5.6E-05 43.5 15.6 184 155-349 287-477 (516)
183 PF06025 DUF913: Domain of Unk 94.0 3.6 7.8E-05 42.4 17.2 95 155-249 110-208 (379)
184 PF12717 Cnd1: non-SMC mitotic 93.8 1.1 2.4E-05 40.8 12.0 89 374-471 2-93 (178)
185 KOG2025 Chromosome condensatio 93.7 13 0.00027 40.6 20.6 129 210-344 60-188 (892)
186 PF05918 API5: Apoptosis inhib 93.7 9 0.00019 41.2 19.8 170 240-429 26-207 (556)
187 PF08045 CDC14: Cell division 93.7 0.81 1.8E-05 44.0 11.0 95 295-389 108-207 (257)
188 PF02985 HEAT: HEAT repeat; I 93.3 0.16 3.5E-06 31.4 3.8 29 198-226 2-30 (31)
189 COG5209 RCD1 Uncharacterized p 93.3 0.61 1.3E-05 43.2 8.9 168 378-545 118-303 (315)
190 KOG2032 Uncharacterized conser 93.2 4.9 0.00011 41.8 16.1 252 206-469 268-530 (533)
191 KOG1248 Uncharacterized conser 93.1 9.2 0.0002 44.0 19.5 225 194-429 648-898 (1176)
192 PF02985 HEAT: HEAT repeat; I 92.9 0.16 3.4E-06 31.5 3.3 29 401-429 1-29 (31)
193 KOG2062 26S proteasome regulat 92.9 8.1 0.00018 42.2 17.7 153 281-457 522-681 (929)
194 PF06371 Drf_GBD: Diaphanous G 92.8 0.89 1.9E-05 41.7 9.8 110 154-265 66-186 (187)
195 KOG1967 DNA repair/transcripti 92.5 0.45 9.7E-06 52.6 8.1 146 156-301 869-1018(1030)
196 KOG2956 CLIP-associating prote 92.5 11 0.00023 39.1 17.3 166 252-428 302-476 (516)
197 KOG4653 Uncharacterized conser 92.4 3.1 6.8E-05 46.0 14.2 179 242-430 732-919 (982)
198 PF14668 RICTOR_V: Rapamycin-i 92.2 0.88 1.9E-05 34.6 7.2 66 295-361 4-69 (73)
199 KOG1820 Microtubule-associated 92.1 4.2 9.1E-05 45.8 15.4 184 158-349 257-443 (815)
200 PF12460 MMS19_C: RNAPII trans 92.1 3.1 6.7E-05 43.7 14.0 193 155-353 190-398 (415)
201 KOG1991 Nuclear transport rece 92.0 10 0.00022 42.9 17.6 234 237-474 410-675 (1010)
202 KOG0414 Chromosome condensatio 91.9 5.3 0.00011 45.9 15.6 135 320-469 920-1063(1251)
203 PF11701 UNC45-central: Myosin 91.7 0.57 1.2E-05 41.8 6.7 111 153-264 41-157 (157)
204 KOG0414 Chromosome condensatio 91.4 0.94 2E-05 51.6 9.3 131 401-546 920-1056(1251)
205 PF14668 RICTOR_V: Rapamycin-i 91.3 1.1 2.3E-05 34.1 6.8 66 254-319 4-70 (73)
206 KOG1832 HIV-1 Vpr-binding prot 91.3 5.8 0.00013 44.1 14.6 293 215-512 328-690 (1516)
207 KOG1248 Uncharacterized conser 91.2 7.1 0.00015 44.9 15.8 213 249-469 666-897 (1176)
208 KOG1788 Uncharacterized conser 90.4 7.8 0.00017 44.0 14.7 271 175-469 663-981 (2799)
209 PF06371 Drf_GBD: Diaphanous G 89.7 3.2 6.9E-05 38.0 10.1 108 197-306 67-186 (187)
210 KOG1020 Sister chromatid cohes 89.6 5.8 0.00012 46.8 13.6 141 196-349 816-960 (1692)
211 KOG4464 Signaling protein RIC- 89.6 14 0.0003 37.7 14.6 154 153-307 44-231 (532)
212 KOG2933 Uncharacterized conser 89.6 3.5 7.7E-05 40.3 10.3 143 153-306 87-233 (334)
213 KOG1078 Vesicle coat complex C 89.4 39 0.00085 37.5 19.7 65 442-512 467-531 (865)
214 KOG1967 DNA repair/transcripti 88.7 1.6 3.4E-05 48.5 8.1 186 198-386 817-1021(1030)
215 KOG3665 ZYG-1-like serine/thre 88.2 5.7 0.00012 44.4 12.3 178 177-372 494-677 (699)
216 PF05918 API5: Apoptosis inhib 88.0 23 0.0005 38.2 16.1 129 157-303 26-158 (556)
217 KOG1820 Microtubule-associated 87.9 6.4 0.00014 44.5 12.4 177 285-469 260-442 (815)
218 PF01347 Vitellogenin_N: Lipop 87.8 13 0.00027 41.3 15.0 168 319-511 395-587 (618)
219 COG5218 YCG1 Chromosome conden 87.7 6.2 0.00013 42.0 11.2 127 373-505 60-191 (885)
220 PF12031 DUF3518: Domain of un 87.4 0.95 2.1E-05 42.6 4.8 80 294-373 140-227 (257)
221 PF11865 DUF3385: Domain of un 87.3 3.4 7.4E-05 36.9 8.2 142 197-348 11-156 (160)
222 KOG1566 Conserved protein Mo25 87.2 32 0.0007 33.9 16.3 200 272-472 73-288 (342)
223 COG5656 SXM1 Importin, protein 86.6 57 0.0012 36.1 18.7 302 154-469 371-710 (970)
224 PF11707 Npa1: Ribosome 60S bi 86.5 39 0.00085 34.2 16.9 155 156-310 58-240 (330)
225 KOG2032 Uncharacterized conser 86.4 47 0.001 34.9 17.2 150 236-389 253-415 (533)
226 PF11865 DUF3385: Domain of un 85.6 11 0.00023 33.8 10.5 144 319-469 10-156 (160)
227 KOG1788 Uncharacterized conser 85.1 26 0.00055 40.1 14.6 278 163-451 476-784 (2799)
228 KOG1243 Protein kinase [Genera 84.9 13 0.00029 40.4 12.3 252 158-428 258-514 (690)
229 KOG2137 Protein kinase [Signal 84.9 7.9 0.00017 42.3 10.7 131 277-416 388-524 (700)
230 KOG2025 Chromosome condensatio 84.2 6.7 0.00015 42.6 9.7 105 399-508 84-188 (892)
231 KOG4464 Signaling protein RIC- 84.1 54 0.0012 33.6 16.4 263 268-535 40-366 (532)
232 COG5116 RPN2 26S proteasome re 83.7 6.1 0.00013 41.8 8.9 122 318-456 550-677 (926)
233 PF10363 DUF2435: Protein of u 82.9 4.4 9.6E-05 32.4 6.1 71 156-228 5-75 (92)
234 PF12031 DUF3518: Domain of un 82.8 3.7 8.1E-05 38.7 6.4 81 252-332 139-229 (257)
235 smart00638 LPD_N Lipoprotein N 82.4 75 0.0016 34.9 17.8 165 319-511 357-543 (574)
236 PF14726 RTTN_N: Rotatin, an a 82.4 11 0.00024 30.5 8.2 94 169-262 2-96 (98)
237 PF14225 MOR2-PAG1_C: Cell mor 82.0 52 0.0011 32.0 16.1 216 155-387 8-252 (262)
238 smart00638 LPD_N Lipoprotein N 81.9 80 0.0017 34.7 17.7 203 198-427 313-543 (574)
239 PF08324 PUL: PUL domain; Int 81.5 14 0.0003 36.0 10.5 179 364-545 65-265 (268)
240 PF08324 PUL: PUL domain; Int 81.4 4.9 0.00011 39.3 7.2 144 212-355 79-237 (268)
241 PF08167 RIX1: rRNA processing 81.3 12 0.00026 33.6 9.1 109 280-389 27-143 (165)
242 PF10363 DUF2435: Protein of u 81.2 6.3 0.00014 31.5 6.4 71 281-353 6-76 (92)
243 PF08506 Cse1: Cse1; InterPro 81.0 59 0.0013 33.5 15.0 158 302-465 194-370 (370)
244 PF12530 DUF3730: Protein of u 80.9 53 0.0011 31.3 15.6 135 200-349 4-151 (234)
245 PF14500 MMS19_N: Dos2-interac 80.7 58 0.0013 31.7 14.6 214 200-429 3-237 (262)
246 cd03568 VHS_STAM VHS domain fa 80.4 7.1 0.00015 34.2 7.1 69 401-469 38-109 (144)
247 COG5218 YCG1 Chromosome conden 80.4 30 0.00065 37.1 12.4 105 196-307 91-196 (885)
248 PF08167 RIX1: rRNA processing 79.7 30 0.00064 31.0 11.1 113 149-265 20-142 (165)
249 PF05659 RPW8: Arabidopsis bro 79.0 4.1 8.9E-05 35.8 5.1 76 22-98 14-89 (147)
250 cd03567 VHS_GGA VHS domain fam 78.2 9.8 0.00021 33.1 7.1 69 401-469 39-115 (139)
251 cd03569 VHS_Hrs_Vps27p VHS dom 77.5 13 0.00028 32.4 7.8 73 153-225 40-114 (142)
252 cd03561 VHS VHS domain family; 76.4 14 0.0003 31.8 7.7 69 401-469 38-111 (133)
253 cd03569 VHS_Hrs_Vps27p VHS dom 76.1 12 0.00026 32.7 7.2 69 401-469 42-113 (142)
254 PF14726 RTTN_N: Rotatin, an a 76.0 24 0.00052 28.6 8.3 92 211-302 2-95 (98)
255 KOG1020 Sister chromatid cohes 75.9 1.9E+02 0.0041 35.0 22.4 138 155-305 817-958 (1692)
256 KOG1566 Conserved protein Mo25 75.4 89 0.0019 31.0 16.1 195 154-349 79-286 (342)
257 KOG1949 Uncharacterized conser 75.4 1.4E+02 0.003 33.1 18.0 180 281-469 177-369 (1005)
258 PF14500 MMS19_N: Dos2-interac 75.1 85 0.0018 30.6 16.3 210 161-389 6-237 (262)
259 KOG2933 Uncharacterized conser 75.0 21 0.00045 35.2 9.0 136 281-428 91-233 (334)
260 KOG0301 Phospholipase A2-activ 74.4 1.4E+02 0.003 32.8 15.5 162 163-331 553-728 (745)
261 COG5116 RPN2 26S proteasome re 74.3 25 0.00055 37.4 9.9 121 196-332 551-675 (926)
262 PF13251 DUF4042: Domain of un 73.0 60 0.0013 29.6 11.1 139 212-352 2-177 (182)
263 PF01347 Vitellogenin_N: Lipop 72.7 1.4E+02 0.0031 33.0 16.6 190 197-419 396-612 (618)
264 smart00288 VHS Domain present 72.7 22 0.00048 30.6 8.0 73 153-225 36-111 (133)
265 cd03561 VHS VHS domain family; 72.1 26 0.00057 30.1 8.3 74 153-226 36-113 (133)
266 cd03568 VHS_STAM VHS domain fa 71.7 23 0.0005 31.0 7.9 74 153-226 36-111 (144)
267 KOG0301 Phospholipase A2-activ 71.5 1.1E+02 0.0023 33.6 13.9 157 209-373 557-727 (745)
268 KOG2137 Protein kinase [Signal 71.3 54 0.0012 36.1 11.9 134 194-332 387-521 (700)
269 KOG1992 Nuclear export recepto 71.3 1.8E+02 0.004 32.8 16.6 202 210-428 307-526 (960)
270 PF11864 DUF3384: Domain of un 71.0 1.5E+02 0.0032 31.6 21.1 91 374-469 229-329 (464)
271 PF10521 DUF2454: Protein of u 70.9 39 0.00086 33.3 10.4 68 197-264 120-201 (282)
272 PF12530 DUF3730: Protein of u 70.9 99 0.0021 29.5 16.9 136 158-307 4-151 (234)
273 PLN03076 ARF guanine nucleotid 69.5 2.9E+02 0.0063 34.8 18.8 135 207-347 1148-1297(1780)
274 COG5098 Chromosome condensatio 69.3 59 0.0013 35.7 11.4 136 281-430 895-1038(1128)
275 smart00288 VHS Domain present 69.1 19 0.00041 31.0 6.8 69 401-469 38-110 (133)
276 PF08389 Xpo1: Exportin 1-like 67.9 44 0.00095 28.7 9.2 126 252-384 3-148 (148)
277 KOG1243 Protein kinase [Genera 67.7 25 0.00055 38.4 8.6 185 155-349 331-515 (690)
278 PF08506 Cse1: Cse1; InterPro 65.8 1.7E+02 0.0036 30.2 17.5 125 294-424 227-370 (370)
279 COG5098 Chromosome condensatio 65.8 80 0.0017 34.7 11.6 169 335-523 911-1086(1128)
280 cd03567 VHS_GGA VHS domain fam 65.1 42 0.0009 29.2 8.1 73 153-225 37-116 (139)
281 PF00790 VHS: VHS domain; Int 63.0 16 0.00035 31.7 5.3 69 401-469 43-117 (140)
282 COG5656 SXM1 Importin, protein 62.9 2.6E+02 0.0056 31.3 21.6 313 152-471 406-758 (970)
283 KOG1949 Uncharacterized conser 62.8 1.5E+02 0.0032 32.9 12.9 175 322-504 177-362 (1005)
284 PRK09169 hypothetical protein; 62.4 4.4E+02 0.0094 33.8 26.1 49 500-548 517-566 (2316)
285 PF00790 VHS: VHS domain; Int 60.7 38 0.00082 29.4 7.2 74 153-226 41-119 (140)
286 KOG2549 Transcription initiati 60.3 1.3E+02 0.0027 32.3 11.7 143 198-349 209-370 (576)
287 PF12830 Nipped-B_C: Sister ch 59.5 1.4E+02 0.0031 27.3 13.1 143 197-349 9-167 (187)
288 PF14225 MOR2-PAG1_C: Cell mor 57.1 1.9E+02 0.0042 28.1 16.9 175 278-469 60-253 (262)
289 cd08050 TAF6 TATA Binding Prot 49.4 91 0.002 31.7 8.8 134 201-348 183-339 (343)
290 PF01603 B56: Protein phosphat 49.0 2E+02 0.0042 30.1 11.4 248 216-474 110-374 (409)
291 PF08216 CTNNBL: Catenin-beta- 46.8 24 0.00053 29.0 3.3 42 213-254 63-104 (108)
292 PF10521 DUF2454: Protein of u 46.4 1.3E+02 0.0028 29.6 9.2 68 238-305 120-201 (282)
293 PF11791 Aconitase_B_N: Aconit 45.2 30 0.00064 30.3 3.7 27 280-306 96-122 (154)
294 cd00197 VHS_ENTH_ANTH VHS, ENT 45.0 1E+02 0.0022 25.4 7.1 68 401-468 38-113 (115)
295 PF06012 DUF908: Domain of Unk 44.7 98 0.0021 31.3 8.2 77 211-287 237-325 (329)
296 cd03572 ENTH_epsin_related ENT 44.2 73 0.0016 27.0 5.9 71 400-470 38-119 (122)
297 KOG0891 DNA-dependent protein 41.8 7.7E+02 0.017 32.2 16.2 258 165-430 492-764 (2341)
298 KOG0392 SNF2 family DNA-depend 41.4 6.3E+02 0.014 30.4 14.1 234 149-389 72-325 (1549)
299 cd03565 VHS_Tom1 VHS domain fa 41.3 1.4E+02 0.0031 25.9 7.5 69 401-469 39-114 (141)
300 PF13251 DUF4042: Domain of un 40.7 2.5E+02 0.0053 25.7 9.2 104 324-430 45-175 (182)
301 PF04821 TIMELESS: Timeless pr 40.4 3.5E+02 0.0076 26.3 11.0 38 313-350 172-209 (266)
302 cd03572 ENTH_epsin_related ENT 40.1 2.1E+02 0.0045 24.2 8.0 72 153-224 37-118 (122)
303 KOG1924 RhoA GTPase effector D 39.9 6E+02 0.013 28.7 15.0 134 377-540 209-351 (1102)
304 PF11791 Aconitase_B_N: Aconit 39.6 1.7E+02 0.0037 25.7 7.5 54 484-548 95-148 (154)
305 PF06685 DUF1186: Protein of u 38.1 3.8E+02 0.0082 25.9 10.6 71 398-479 71-152 (249)
306 cd08050 TAF6 TATA Binding Prot 37.6 1.5E+02 0.0032 30.2 8.1 69 197-266 211-297 (343)
307 PF06012 DUF908: Domain of Unk 37.2 2E+02 0.0043 29.1 9.0 61 294-354 238-302 (329)
308 PF01365 RYDR_ITPR: RIH domain 36.6 1.1E+02 0.0025 28.3 6.8 113 273-389 38-169 (207)
309 PF10274 ParcG: Parkin co-regu 35.9 3.4E+02 0.0075 24.8 10.3 77 152-228 36-112 (183)
310 PF01365 RYDR_ITPR: RIH domain 35.5 1.7E+02 0.0038 27.1 7.8 94 414-513 75-169 (207)
311 PF12783 Sec7_N: Guanine nucle 35.4 1.6E+02 0.0035 26.2 7.3 84 397-482 70-158 (168)
312 KOG1822 Uncharacterized conser 35.0 1E+03 0.022 30.1 20.8 113 239-353 878-992 (2067)
313 PF08216 CTNNBL: Catenin-beta- 34.8 56 0.0012 26.9 3.7 41 255-295 64-104 (108)
314 PF06685 DUF1186: Protein of u 33.5 4.5E+02 0.0097 25.4 11.7 60 191-252 106-169 (249)
315 PF03130 HEAT_PBS: PBS lyase H 32.9 49 0.0011 19.4 2.3 26 294-329 1-26 (27)
316 PF10474 DUF2451: Protein of u 32.7 33 0.00071 32.8 2.4 77 35-118 92-168 (234)
317 KOG1410 Nuclear transport rece 31.9 7.6E+02 0.016 27.6 17.3 267 206-494 16-312 (1082)
318 PF14663 RasGEF_N_2: Rapamycin 31.7 1.7E+02 0.0038 24.3 6.3 39 401-439 9-47 (115)
319 KOG2005 26S proteasome regulat 31.7 7.6E+02 0.017 27.5 13.4 222 195-426 47-293 (878)
320 PF12231 Rif1_N: Rap1-interact 30.4 6.1E+02 0.013 26.0 20.7 175 165-348 4-203 (372)
321 PF12830 Nipped-B_C: Sister ch 30.4 4.2E+02 0.0091 24.1 11.7 123 239-372 10-140 (187)
322 PF04499 SAPS: SIT4 phosphatas 30.3 3.7E+02 0.008 28.7 10.0 108 361-469 20-147 (475)
323 PF13001 Ecm29: Proteasome sta 29.7 7.3E+02 0.016 26.7 14.7 171 246-429 246-443 (501)
324 PF04388 Hamartin: Hamartin pr 29.2 8E+02 0.017 27.6 12.7 109 156-264 6-138 (668)
325 KOG1525 Sister chromatid cohes 28.9 2.1E+02 0.0045 34.5 8.4 145 196-349 259-405 (1266)
326 KOG1848 Uncharacterized conser 28.9 4.4E+02 0.0095 31.9 10.5 95 209-307 855-958 (1610)
327 KOG2549 Transcription initiati 28.8 7.3E+02 0.016 26.8 11.4 138 240-388 210-369 (576)
328 KOG4231 Intracellular membrane 28.2 58 0.0013 34.3 3.3 68 281-349 331-399 (763)
329 PLN03205 ATR interacting prote 28.0 1.3E+02 0.0028 30.9 5.6 120 402-522 325-455 (652)
330 PF04499 SAPS: SIT4 phosphatas 27.7 2.9E+02 0.0063 29.5 8.6 80 310-389 53-148 (475)
331 PLN03076 ARF guanine nucleotid 27.4 1.4E+03 0.03 29.2 19.7 255 167-429 1150-1489(1780)
332 PF07571 DUF1546: Protein of u 26.6 1.3E+02 0.0028 24.0 4.5 56 209-264 19-76 (92)
333 smart00567 EZ_HEAT E-Z type HE 26.3 1.1E+02 0.0023 18.2 3.1 27 293-329 2-28 (30)
334 cd03565 VHS_Tom1 VHS domain fa 26.1 4.3E+02 0.0094 22.9 8.5 73 153-225 37-115 (141)
335 KOG2676 Uncharacterized conser 26.0 72 0.0016 32.1 3.4 63 297-360 375-440 (478)
336 PF04869 Uso1_p115_head: Uso1 26.0 6.8E+02 0.015 25.1 12.3 152 320-495 35-211 (312)
337 PF04388 Hamartin: Hamartin pr 25.9 6.9E+02 0.015 28.1 11.5 59 454-512 81-139 (668)
338 PF14663 RasGEF_N_2: Rapamycin 25.5 1.4E+02 0.003 24.9 4.7 39 442-480 9-47 (115)
339 PF14631 FancD2: Fanconi anaem 25.4 1.4E+03 0.03 28.5 17.9 291 239-544 194-573 (1426)
340 KOG1087 Cytosolic sorting prot 25.3 1.7E+02 0.0037 31.1 6.2 68 401-468 39-110 (470)
341 PF07923 N1221: N1221-like pro 25.2 1.3E+02 0.0029 29.7 5.3 59 149-207 55-127 (293)
342 KOG2199 Signal transducing ada 24.7 3.9E+02 0.0085 27.5 8.2 70 400-469 45-117 (462)
343 PF04064 DUF384: Domain of unk 23.9 1.6E+02 0.0036 21.2 4.1 42 508-549 2-44 (58)
344 PF12231 Rif1_N: Rap1-interact 23.5 8.1E+02 0.018 25.1 17.9 133 291-428 59-203 (372)
345 PF11864 DUF3384: Domain of un 22.4 9.5E+02 0.021 25.5 27.1 88 335-429 230-330 (464)
346 PF01603 B56: Protein phosphat 22.2 9.1E+02 0.02 25.2 12.9 250 250-513 103-370 (409)
347 KOG0392 SNF2 family DNA-depend 21.8 1.5E+03 0.032 27.5 13.7 259 71-349 43-325 (1549)
348 PF12054 DUF3535: Domain of un 21.7 8.9E+02 0.019 25.6 10.9 76 170-249 103-180 (441)
349 KOG1410 Nuclear transport rece 21.7 1.2E+03 0.025 26.2 22.6 265 156-430 7-335 (1082)
350 PF04821 TIMELESS: Timeless pr 21.5 7.5E+02 0.016 24.0 12.2 39 311-349 101-149 (266)
351 KOG4231 Intracellular membrane 21.5 86 0.0019 33.1 3.1 67 444-511 331-397 (763)
352 PF14676 FANCI_S2: FANCI solen 21.1 5.9E+02 0.013 22.6 8.9 114 339-465 37-156 (158)
353 PF07923 N1221: N1221-like pro 21.1 1.6E+02 0.0034 29.2 4.9 54 398-451 58-126 (293)
354 PF12726 SEN1_N: SEN1 N termin 20.7 1.3E+03 0.027 26.3 12.8 108 281-390 444-554 (727)
355 KOG0891 DNA-dependent protein 20.7 7.6E+02 0.016 32.2 11.3 194 156-350 567-764 (2341)
356 KOG0413 Uncharacterized conser 20.5 4.3E+02 0.0094 30.7 8.2 122 335-469 946-1072(1529)
357 cd04894 ACT_ACR-like_1 ACT dom 20.2 69 0.0015 23.4 1.5 19 37-55 50-68 (69)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1e-33 Score=325.49 Aligned_cols=387 Identities=25% Similarity=0.308 Sum_probs=327.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--c-hH-
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG--S-CE- 230 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~-~~- 230 (560)
.|+.|+..|.+++...+..|+..|.+++.+ ++++..++..|.+++|+.+|++++++.++.|+.+|..|+.++ + ++
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~ 137 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS 137 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 489999999999999999999999999874 778888888999999999999999999999999999999875 3 44
Q ss_pred HHHHhCCCHHHHHHhhhcCC---HHHHHHHHHHHHHhhCChhhHH-HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585 231 NWLVSEGVLPPLIRLVESGS---TVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS 306 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~La~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (560)
..++..|++|+|+.++++++ ..+++.++.+|.+|+.+.++.+ .+++.|+++.|+.+++++++..+..|+++|.+++
T Consensus 138 ~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~La 217 (2102)
T PLN03200 138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM 217 (2102)
T ss_pred hhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45668999999999999873 3467788999999999988775 5689999999999999999999999999998888
Q ss_pred CC-chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc----------
Q 008585 307 AV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL---------- 375 (560)
Q Consensus 307 ~~-~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~---------- 375 (560)
.+ ++.+..+++.|+||.|++++.++++..+|++|+++|+||+.+++++++.+++.|+++.|++++.++.
T Consensus 218 ss~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~ 297 (2102)
T PLN03200 218 MAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQ 297 (2102)
T ss_pred cCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccch
Confidence 64 6799999999999999999987654479999999999999999999999999999999999997422
Q ss_pred -cHHHHHHHHHHhhcc--c-----------cH--H---------------------------------------------
Q 008585 376 -PQESAVGALRNLVGS--V-----------SQ--E--------------------------------------------- 394 (560)
Q Consensus 376 -~~~~a~~~L~nla~~--~-----------~~--~--------------------------------------------- 394 (560)
.+++|+|+|+|+|.. . .+ .
T Consensus 298 ~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~ 377 (2102)
T PLN03200 298 ALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTK 377 (2102)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCc
Confidence 479999999998871 1 00 0
Q ss_pred ---------------------HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHcc
Q 008585 395 ---------------------VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA 452 (560)
Q Consensus 395 ---------------------~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s 452 (560)
.+.+.++++.|+.+|...+.++|..++++|++++.+ .+.++.+.+.|++|.|+++|.+
T Consensus 378 ~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s 457 (2102)
T PLN03200 378 LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL 457 (2102)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC
Confidence 001123344455555556678999999999999955 8899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChh-hHHHHHHcChhHHHH
Q 008585 453 KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKK-CKKLMISYGAIGYLK 531 (560)
Q Consensus 453 ~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~-~r~~i~~~g~i~~L~ 531 (560)
.+..+|..|+++|.+|+...+..+..+.+.|+++.|+++|.+++ ..+++.++.++.|++.++. .+..+.+.|+++.|.
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~-~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV 536 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS-QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALL 536 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHH
Confidence 99999999999999999766655556668999999999999764 4688899999999998765 555566889999999
Q ss_pred HhhccCchhHHH
Q 008585 532 KLSEMDIPGARK 543 (560)
Q Consensus 532 ~L~~~~~~~akk 543 (560)
++++.+++..++
T Consensus 537 ~LL~sgd~~~q~ 548 (2102)
T PLN03200 537 WLLKNGGPKGQE 548 (2102)
T ss_pred HHHhCCCHHHHH
Confidence 999888776554
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=323.94 Aligned_cols=391 Identities=24% Similarity=0.301 Sum_probs=335.0
Q ss_pred hhchHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChHHHHHHhh-CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585 152 THGNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMG-RSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (560)
....+..++..|.++ +++.+..|+..|..+++.+++++..+.+ .|.+|.|+.+|.++++.+++.|+.+|.+++.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 355688999999977 7899999999999999999999998885 6889999999999999999999999999999989
Q ss_pred hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh--h-hH-HHHHhCCChHHHHHHhccCC---hHHHHHHHHH
Q 008585 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--E-MA-RAIVGHGGVRPLIEICQTGD---SVSQAAAACT 301 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~-~~-~~l~~~g~i~~Lv~ll~~~~---~~~~~~a~~a 301 (560)
++..++..|++++|+.+|++++++.++.|+.+|.+|+.+. + ++ ..++..|++|.|+.++++++ ..++..++.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999864 3 34 34567999999999999863 3467788999
Q ss_pred HHHhcCCchhH-HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccH
Q 008585 302 LKNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQ 377 (560)
Q Consensus 302 L~nLa~~~~~~-~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~ 377 (560)
|.||+.+++++ +.+++.|+++.++.++.++++ ..+++|+.+|.+++.+.+..++.+++.|+++.|++++.+ +.++
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~-~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VR 249 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNS-DAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVR 249 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHH
Confidence 99999877766 567899999999999999886 899999999999998877789999999999999999964 4679
Q ss_pred HHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCC---------HHHHHHHHHHHHHHhCC-hh-----------H-
Q 008585 378 ESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS---------LGAQQAAASALCRVCTS-AE-----------M- 433 (560)
Q Consensus 378 ~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~---------~~v~~~A~~aL~~La~~-~~-----------~- 433 (560)
+.|+++|+|++. ++.++.+.+.|+++.|++++.+.+ ..+++.|.|+|+|+|.+ +. .
T Consensus 250 E~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~r 329 (2102)
T PLN03200 250 AEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPR 329 (2102)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccc
Confidence 999999999998 477889999999999999998544 45699999999998873 00 0
Q ss_pred -------------------------------------------------------------------HHHHHhcCCHHHH
Q 008585 434 -------------------------------------------------------------------KKLVGEAGCTPLL 446 (560)
Q Consensus 434 -------------------------------------------------------------------~~~i~~~g~i~~L 446 (560)
++.+.+.++++.|
T Consensus 330 d~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~L 409 (2102)
T PLN03200 330 SPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVL 409 (2102)
T ss_pred hHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhh
Confidence 1112233556667
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-ChhhHHHHHHcC
Q 008585 447 IKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-SKKCKKLMISYG 525 (560)
Q Consensus 447 v~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-~~~~r~~i~~~g 525 (560)
+.|+...+.++|..++++|++|+.+..+....+.+.++++.|+++|.+++ ...++.++..+.+++. +..++..+++.|
T Consensus 410 V~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 410 VGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 77777777889999999999999777777777778899999999999864 4578899999999996 457899999999
Q ss_pred hhHHHHHhhccCchhHHHH
Q 008585 526 AIGYLKKLSEMDIPGARKL 544 (560)
Q Consensus 526 ~i~~L~~L~~~~~~~akkl 544 (560)
+++.|.+|+..+++..++-
T Consensus 489 aIP~LV~LL~s~~~~iqee 507 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKED 507 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHH
Confidence 9999999998887765554
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=271.86 Aligned_cols=385 Identities=19% Similarity=0.242 Sum_probs=329.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc-hHHH
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-CENW 232 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-~~~~ 232 (560)
....+..+.++++..+..+...+..+.+... .....++..|.++.++..|... ++.+|..|+++|.+++.... .-+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 7788888999999999999999999986432 2344556669999999999855 59999999999999998765 6677
Q ss_pred HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHHhcCCch
Q 008585 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVPE 310 (560)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~~ 310 (560)
+++.|++|.+++++.+.+..+++.|.|+|.|++.+ +..+..+.++|++++|+.++...++ ...+.+.|+|.|||.+..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 88999999999999999999999999999999987 6678888999999999999988766 678999999999998653
Q ss_pred hHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHh
Q 008585 311 VRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL 387 (560)
Q Consensus 311 ~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nl 387 (560)
-...+.. ..++|.|..++.+.+. ++...++|+|.+|+.+..+.-+++++.|+++.|+.+|.+ +.++.+|+++++|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 3333322 5689999999999997 899999999999998877888999999999999999987 56789999999999
Q ss_pred hc--cccHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHH
Q 008585 388 VG--SVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQ 463 (560)
Q Consensus 388 a~--~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~ 463 (560)
+. ....+.++..|+++.|..++.. ....++++|+|+|+|++.+ .+..++++++|.+|.|+.++++.+..+|..|++
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 98 3556788899999999999984 5667999999999999855 889999999999999999999999999999999
Q ss_pred HHHHhc-CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC------C---hhhHHHHHHcChhHHHHHh
Q 008585 464 AISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP------S---KKCKKLMISYGAIGYLKKL 533 (560)
Q Consensus 464 aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~------~---~~~r~~i~~~g~i~~L~~L 533 (560)
+++|++ .+.++.-.++.+.+.++++..+|.-.+.+. ...++.++.++-. . .....+|.++|++..+..|
T Consensus 387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i-i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L 465 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI-ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL 465 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH-HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh
Confidence 999999 445666777778899999999996655444 6678877776652 1 4566788999999999999
Q ss_pred hccCchhHH
Q 008585 534 SEMDIPGAR 542 (560)
Q Consensus 534 ~~~~~~~ak 542 (560)
...++++..
T Consensus 466 Q~hen~~Iy 474 (514)
T KOG0166|consen 466 QSHENEEIY 474 (514)
T ss_pred hccccHHHH
Confidence 999996533
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-31 Score=270.60 Aligned_cols=359 Identities=18% Similarity=0.259 Sum_probs=312.6
Q ss_pred hchHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585 153 HGNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (560)
...|+.++..|..+ ++..+.+|+.+|.++++++.+..+.+++.|.++.++.++.+++..++++|+++|++++.+++ +|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 35689999999744 58889999999999999999999999999999999999999999999999999999999987 99
Q ss_pred HHHHhCCCHHHHHHhhhcCCH-HHHHHHHHHHHHhhCChhhHHHH-HhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-
Q 008585 231 NWLVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAI-VGHGGVRPLIEICQTGDSVSQAAAACTLKNISA- 307 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~l-~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~- 307 (560)
..+++.|++++|+.++...+. .....+.|+|.+|+...+....+ .-..++|.|..++.+.|+++...|+|+|++|+.
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999998765 68889999999999865322211 124567999999999999999999999999996
Q ss_pred CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHH
Q 008585 308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGAL 384 (560)
Q Consensus 308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L 384 (560)
.++.-+.+++.|+++.|+++|.+.+. .++..|+++++|++.+++...+.++..|+++.|..++.. ..++..|+|+|
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSP-KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCc-ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 45888889999999999999999987 799999999999999999999999999999999999974 34789999999
Q ss_pred HHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHH
Q 008585 385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREV 460 (560)
Q Consensus 385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~ 460 (560)
.|++. .+..+.+++.|++|.|+++|..++-.+|.+|+|+|+|++.+ ++.-+++.+.|++++|+.+|.-.+..+...
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v 426 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILV 426 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHH
Confidence 99998 45678889999999999999999999999999999999855 788899999999999999998888888889
Q ss_pred HHHHHHHhcCCC--------hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585 461 AAQAISSLVTLP--------QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (560)
Q Consensus 461 A~~aL~~L~~~~--------~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 513 (560)
++.+|.+|.... .....++++.+++..+-.+=.+.+ +.+.+.|..++-.--.
T Consensus 427 ~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen-~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHEN-EEIYKKAYKIIDTYFS 486 (514)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhcccc-HHHHHHHHHHHHHhcC
Confidence 999999997322 223457778888777766655544 4577788888875544
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-32 Score=256.32 Aligned_cols=381 Identities=24% Similarity=0.308 Sum_probs=332.3
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (560)
+...++.+..+++.+...+..+...+.+++-. .+++..++.-+|+++|+.-+..+..++|-.++.++.+|+..+++|..
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhh
Confidence 33466778888999999999999999999874 44666778889999988877777889999999999999999999999
Q ss_pred HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Q 008585 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312 (560)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~ 312 (560)
+...|++.+++++-++.+..+|.++..+|.+|+...++++.++..|++|.|+.+++++++.+|..++.++.|++.+...|
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC--cHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc--cHHHHHHHHHHhh
Q 008585 313 QMLAEEG--IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLV 388 (560)
Q Consensus 313 ~~i~e~g--~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~--~~~~a~~~L~nla 388 (560)
+.+++.+ .++.|+.+++++++ .++-.|..+|+||+.+. ..+..++++|++|.+++++++|. .-...+.+|+|++
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis 320 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSD-KVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS 320 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc
Confidence 9999977 99999999999998 89999999999999965 45678999999999999998853 3456788999999
Q ss_pred c-cccHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 008585 389 G-SVSQEVLISLGFFPRLVHVLKAGS-LGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465 (560)
Q Consensus 389 ~-~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL 465 (560)
. +-+...+.+.||+.+|+++|+.++ .++|-.|..+|+||+. ++.+++.+.+.|.+|.+..++..++.++|..-..++
T Consensus 321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~ 400 (550)
T KOG4224|consen 321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI 400 (550)
T ss_pred cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence 8 555666789999999999999876 6699999999999996 588899999999999999999999999999999999
Q ss_pred HHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHH------cChhHHHHHhhccCc
Q 008585 466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMIS------YGAIGYLKKLSEMDI 538 (560)
Q Consensus 466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~------~g~i~~L~~L~~~~~ 538 (560)
..|+.....+..+. +.+.++.|+.++.+.. .+++..+..+|.|++++...-.++.+ .|.-.+|.+...++.
T Consensus 401 a~Lal~d~~k~~ll-d~gi~~iLIp~t~s~s-~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~ 477 (550)
T KOG4224|consen 401 AQLALNDNDKEALL-DSGIIPILIPWTGSES-EEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE 477 (550)
T ss_pred HHHHhccccHHHHh-hcCCcceeecccCccc-hhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH
Confidence 99987766655555 7899999999998864 45888999999999987765555544 344455666555554
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=8.6e-30 Score=239.46 Aligned_cols=396 Identities=16% Similarity=0.185 Sum_probs=328.0
Q ss_pred hhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC
Q 008585 150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESG 227 (560)
Q Consensus 150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~ 227 (560)
..+...++++.+.|.+.+.+.+.+|...+..+++.. ......+++.|.||.+++++++. ..-.+-.|+|+|.+++...
T Consensus 67 qq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 67 QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 345667899999999999999999999999998643 23455778999999999999654 4556778999999998876
Q ss_pred c-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCCh--HHHHHHHHHHH
Q 008585 228 S-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDS--VSQAAAACTLK 303 (560)
Q Consensus 228 ~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~--~~~~~a~~aL~ 303 (560)
. ..+.+++.|++|.++++|.+++..+++.+.|+|.|++.+ +..+..+.+.|++.+++.++.+..+ .+.+.+.|+|.
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS 226 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS 226 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence 5 445667999999999999999999999999999999987 5567788999999999999987655 67799999999
Q ss_pred HhcCC--c-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHH
Q 008585 304 NISAV--P-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQE 378 (560)
Q Consensus 304 nLa~~--~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~ 378 (560)
||++. | ..-..+ ..++|.|.+|+.+.++ ++..-|++++..|+.+.-+..+.+++.|....|+++|.+ ..++.
T Consensus 227 NlcRGknP~P~w~~i--sqalpiL~KLiys~D~-evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt 303 (526)
T COG5064 227 NLCRGKNPPPDWSNI--SQALPILAKLIYSRDP-EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303 (526)
T ss_pred HhhCCCCCCCchHHH--HHHHHHHHHHHhhcCH-HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence 99963 2 222222 3479999999999887 899999999999999877778889999999999999987 45789
Q ss_pred HHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCH
Q 008585 379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPN 455 (560)
Q Consensus 379 ~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~ 455 (560)
++++.++|+.. ....+.++..|+++.+..+|.+....++++|||++.|+.. +.+..+++++.+.+|+|++++.+.+-
T Consensus 304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~ 383 (526)
T COG5064 304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY 383 (526)
T ss_pred HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence 99999999998 3556778899999999999999888999999999999984 58889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC---hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-----------Ch-hhHHH
Q 008585 456 SVREVAAQAISSLVTLP---QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-----------SK-KCKKL 520 (560)
Q Consensus 456 ~v~~~A~~aL~~L~~~~---~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-----------~~-~~r~~ 520 (560)
.++..||+++.+...+. ++.-+++.+.|.+.+|..+|+-.+.. +-+.++.++-++.+ +. ....+
T Consensus 384 k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk-iiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~ 462 (526)
T COG5064 384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK-IIEVALDAIENILKVGEQDRLRYGKNINIYAVY 462 (526)
T ss_pred HHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc-chhhhHHHHHHHHhhhhHHHHhccCCccHHHHH
Confidence 99999999999999554 33444555789999999999987543 44455666655542 11 34556
Q ss_pred HHHcChhHHHHHhhccCch----hHHHHHHHHh
Q 008585 521 MISYGAIGYLKKLSEMDIP----GARKLLERLE 549 (560)
Q Consensus 521 i~~~g~i~~L~~L~~~~~~----~akkl~~~l~ 549 (560)
+-++|++..+-.+.+..+. .|.+++++..
T Consensus 463 vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 463 VEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred HHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 6669999999999888774 4666666654
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-30 Score=243.08 Aligned_cols=367 Identities=22% Similarity=0.268 Sum_probs=320.9
Q ss_pred cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHH
Q 008585 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR 244 (560)
Q Consensus 165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~ 244 (560)
+++...+..|+-+..+.... ..+.+ .....++.+-++.+.++.++-.+..++++++-+.+++..+++.+++..|+.
T Consensus 58 SDnlnlqrsaalafAeitek---~vr~V-sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~ 133 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITEK---GVRRV-SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLIL 133 (550)
T ss_pred ccccccchHHHHHHHHHHHH---HHHHh-hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHH
Confidence 34445555666566555432 22222 446788888999999999999999999999999999999999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHH
Q 008585 245 LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVM 324 (560)
Q Consensus 245 lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L 324 (560)
-+.++...+|..+..|+.+|+.-++++..+...|++.++.++-++++..+|..+.++|.|++...|+|+.++..|++|.|
T Consensus 134 qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvL 213 (550)
T KOG4224|consen 134 QMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVL 213 (550)
T ss_pred HhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhh
Confidence 88888888999999999999998999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCC--CHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhC
Q 008585 325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG--GIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISL 399 (560)
Q Consensus 325 ~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g--~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~ 399 (560)
+.++++++. ++|++++.++.|++-. ...|+.+.+.+ .++.|+.++++ ++++-.|.-+|+|++. .+++..+++.
T Consensus 214 Vsll~s~d~-dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a 291 (550)
T KOG4224|consen 214 VSLLKSGDL-DVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA 291 (550)
T ss_pred hhhhccCCh-hHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc
Confidence 999999997 8999999999999985 56678888887 99999999987 6678899999999999 7888999999
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhcC-CChhhHH
Q 008585 400 GFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPN-SVREVAAQAISSLVT-LPQNCRE 477 (560)
Q Consensus 400 ~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~-~v~~~A~~aL~~L~~-~~~~~~~ 477 (560)
|.+|.++++|+++....-...+.++.|++.++-+...+.++|++.+|++++..++. +++..|..+|++|+. ...|.+.
T Consensus 292 g~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~ 371 (550)
T KOG4224|consen 292 GSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSV 371 (550)
T ss_pred CCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHH
Confidence 99999999999888777788889999999999898999999999999999987654 599999999999996 4555554
Q ss_pred HhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCch
Q 008585 478 VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIP 539 (560)
Q Consensus 478 ~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~ 539 (560)
+...+.++.+..++-+++- .++...-.++..|+-+...+..+.+.|.++.|..++..+.+
T Consensus 372 -i~esgAi~kl~eL~lD~pv-svqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~ 431 (550)
T KOG4224|consen 372 -IRESGAIPKLIELLLDGPV-SVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESE 431 (550)
T ss_pred -HhhcCchHHHHHHHhcCCh-hHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccch
Confidence 4568999999999888754 46777888899999888999999999999999998876653
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=1.9e-29 Score=237.08 Aligned_cols=357 Identities=17% Similarity=0.250 Sum_probs=302.4
Q ss_pred hchHHHHHHHHccCCH-HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585 153 HGNTRELLARLQIGHL-EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~-~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (560)
...++.++..+..... --+.+|+.+|.+++++.....+.+++.|.||.++++|.+++.+++++++|+|++++++++ +|
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 4468888888854444 448899999999999888777888999999999999999999999999999999999987 99
Q ss_pred HHHHhCCCHHHHHHhhhcCC--HHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585 231 NWLVSEGVLPPLIRLVESGS--TVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS 306 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (560)
+.+.+.|++.+++.++.+.. ..+...+.|+|.||+. +|+.-|.-+ ...+|.|.+++.+.|+++...|+|++.+|+
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 99999999999999998874 4778899999999987 444444322 235689999999999999999999999999
Q ss_pred CCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHH
Q 008585 307 AVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA 383 (560)
Q Consensus 307 ~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~ 383 (560)
..+ +....+.+.|+.+.|+++|.+++. .++..+++.++|+..+++...+.+++.|.++.+..+|.+ ..++..++|.
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~sa-~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHESA-KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCccc-cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 866 777888899999999999999887 899999999999999998888889999999999999988 4689999999
Q ss_pred HHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC----hhHHHHHHhcCCHHHHHHHHccCCHHH
Q 008585 384 LRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS----AEMKKLVGEAGCTPLLIKLLEAKPNSV 457 (560)
Q Consensus 384 L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~----~~~~~~i~~~g~i~~Lv~ll~s~~~~v 457 (560)
|.|+.. .+..+.+++.+.+|+|+++|..-+..++++|||++.|...+ |+.-+++.+.|++++|.++|.-.+..+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki 430 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI 430 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence 999998 46678889999999999999999999999999999999865 889999999999999999999877778
Q ss_pred HHHHHHHHHHhcCCC----------hh-hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 458 REVAAQAISSLVTLP----------QN-CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 458 ~~~A~~aL~~L~~~~----------~~-~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
-+.++.++.++.... .| ...++.+.+++..+..+-++.+ ..+...+..++-...
T Consensus 431 iev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n-~~iy~KAYsIIe~fF 495 (526)
T COG5064 431 IEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVN-RTIYDKAYSIIEKFF 495 (526)
T ss_pred hhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccc-cHHHHHHHHHHHHHc
Confidence 888888888886221 11 3456667788777766666554 345555666655443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=2.7e-23 Score=222.69 Aligned_cols=368 Identities=18% Similarity=0.200 Sum_probs=309.0
Q ss_pred HHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCC
Q 008585 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS 250 (560)
Q Consensus 171 ~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~ 250 (560)
.+.++..|.+++. +++....+...|+++.|+++|++++.++...++.+|..|+...+++..+.+.|+++.|++++.+++
T Consensus 266 lrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 266 LRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 4456777888886 667878888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhc
Q 008585 251 TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC 330 (560)
Q Consensus 251 ~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~ 330 (560)
..++..+.++|.||+.+++.+..+++.|++|.|+.+|.+ +..+..+..+|+|+|.+++++..+...+++|.+++++.+
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~ 422 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLE 422 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHh
Confidence 999999999999999999999999999999999999985 456678999999999999999999999999999998776
Q ss_pred CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHHHHHhhccc-cHHHHHhCCcHHHHHHH
Q 008585 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVGSV-SQEVLISLGFFPRLVHV 408 (560)
Q Consensus 331 ~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~L~nla~~~-~~~~l~~~~~i~~Lv~l 408 (560)
+....+...++.++.|++.+ +.+.+.+.+.|+++.|++..-. .+ ...+.+|+|++.++ ..+.. -.+++..|+..
T Consensus 423 ~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D--~lLlKlIRNiS~h~~~~k~~-f~~~i~~L~~~ 498 (708)
T PF05804_consen 423 NSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRD--PLLLKLIRNISQHDGPLKEL-FVDFIGDLAKI 498 (708)
T ss_pred CCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhccc--HHHHHHHHHHHhcCchHHHH-HHHHHHHHHHH
Confidence 54446777889999999986 5567888898999999987633 22 33568999999943 22222 23578888888
Q ss_pred HhcC-CHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCChhhHHHhhhCCC
Q 008585 409 LKAG-SLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQAISSLVTLPQNCREVKRDDKS 484 (560)
Q Consensus 409 L~~~-~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~ 484 (560)
+..+ +.+...++..+|+||... .+..+.+.+.+.+|.|.+++..+ .+++...+...++.++.++ .+...+...+.
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~-~~A~lL~~sgl 577 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP-ECAPLLAKSGL 577 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH-HHHHHHHhCCh
Confidence 8764 689999999999999855 56777777889999999999754 4568888889999887654 44556656899
Q ss_pred hHHHHhccCCC-CchhhHHHHHHHHHHhCCChhhHHHHHH-cChhHHHHHhhccCchhHHHHHH
Q 008585 485 VPNLVQLLDPS-PQNTAKKYAVACLASLSPSKKCKKLMIS-YGAIGYLKKLSEMDIPGARKLLE 546 (560)
Q Consensus 485 v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r~~i~~-~g~i~~L~~L~~~~~~~akkl~~ 546 (560)
++.|+.+|... ++++.....+.++..+..++..|..|++ .++..+|.+|..-.++..+|...
T Consensus 578 i~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d 641 (708)
T PF05804_consen 578 IPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCD 641 (708)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHH
Confidence 99999999887 4556777899999999999999998865 78999999998888776665543
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=5.4e-22 Score=212.70 Aligned_cols=361 Identities=17% Similarity=0.169 Sum_probs=305.4
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (560)
+..|..|+..|+.++.+....++..|..|+- ..+|+..+.+.|.++.|++++++++.+++..++++|.||+.+++.|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 6678999999999999999889888888876 455888899999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchh
Q 008585 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEV 311 (560)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~ 311 (560)
+++.|++|.|+.+|++++ .+..+..+|++||.+++++..|...++++.+++++-. +++.+...++..+.|++.++.+
T Consensus 368 mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 999999999999998654 5677999999999999999999999999999998654 6677778889999999999999
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhh
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLV 388 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla 388 (560)
.+.+.+.|+++.|++..-+..+ .+ .+.++.|++.+++..+..+. +.+..|+..+.. ++....++++|+|+.
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D-~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRD-PL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhccc-HH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 9999999999999998765553 22 34699999998766665544 357777777754 456778899999998
Q ss_pred cc--ccHHHHHhCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHH
Q 008585 389 GS--VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAA 462 (560)
Q Consensus 389 ~~--~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~ 462 (560)
.+ .....+.+.++++.|.+.|..+ .+++..+++..++.++.+++....+.+.|.++.|+.++.++ +.+.....+
T Consensus 520 ~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil 599 (708)
T PF05804_consen 520 IPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQIL 599 (708)
T ss_pred cCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHH
Confidence 73 3445555789999999999865 46899999999999999999999999999999999999864 567888899
Q ss_pred HHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-ChhhHHHHHH
Q 008585 463 QAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-SKKCKKLMIS 523 (560)
Q Consensus 463 ~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-~~~~r~~i~~ 523 (560)
.++..+..|++.+..++.+.+.+.+|+.++++.+. .+++.+=.+|--++. +++..++|..
T Consensus 600 ~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~-~ir~~~d~~Ldii~e~d~~w~~ri~~ 660 (708)
T PF05804_consen 600 YVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNA-EIRKVCDNALDIIAEYDEEWAERIRR 660 (708)
T ss_pred HHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhCHHHHHHhhH
Confidence 99999999999999999989999999999999865 467777777776664 4455555544
No 11
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=3.4e-18 Score=161.52 Aligned_cols=310 Identities=18% Similarity=0.226 Sum_probs=259.9
Q ss_pred HccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCH
Q 008585 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGS-CENWLVSEGVL 239 (560)
Q Consensus 163 L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i 239 (560)
-.+++.....+++..|..+....| .+.+..+...++.+|.. ++.++....+..+..-+...+ +|+.+++.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 356777788899999999988777 45677889999999864 457777788877777766555 99999999999
Q ss_pred HHHHHhhhcC-CHHHHHHHHHHHHHhhCChhh----------HHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcC
Q 008585 240 PPLIRLVESG-STVGKEKATISLQRLSMSAEM----------ARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISA 307 (560)
Q Consensus 240 ~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~----------~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~ 307 (560)
+.+.+.|... ...+....+++++.|..+++. .+.|++.|++..|++.++. -+|.+....+.+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 9999877665 445777889999999887655 4678888999999999975 579999999999999999
Q ss_pred CchhHHHHHhcCcHHHHHHHhhcCCchhHH---HHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc----cCCccHHHH
Q 008585 308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSK---EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESA 380 (560)
Q Consensus 308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~---~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll----~~~~~~~~a 380 (560)
.+|+|+.+.|.|++..++.++.+.++..++ ..++..|..|+.+ ++++..+++.||.+.++.++ ++|.+-+.+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999999999884433555 5677888888874 67789999999999998886 347788899
Q ss_pred HHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCC--HHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHccCCH
Q 008585 381 VGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS--LGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPN 455 (560)
Q Consensus 381 ~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~--~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s~~~ 455 (560)
+.++.-+|. ++....+++.|+-...++.|+... ..+|++|+++++|++ ++.++++.+...| ++.|+...++.++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCc
Confidence 999999997 778888899999999999998754 789999999999998 5577888777766 9999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhHHH
Q 008585 456 SVREVAAQAISSLVTLPQNCREV 478 (560)
Q Consensus 456 ~v~~~A~~aL~~L~~~~~~~~~~ 478 (560)
.++..|..+|..|..+..+++.-
T Consensus 430 tce~~akaALRDLGc~v~lre~w 452 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGCDVYLREEW 452 (461)
T ss_pred cHHHHHHHHHHhcCcchhhHHHh
Confidence 99999999999998888877653
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=1.5e-18 Score=181.90 Aligned_cols=373 Identities=21% Similarity=0.209 Sum_probs=297.8
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC---chH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG---SCE 230 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~---~~~ 230 (560)
-.+++.+..|.+.++..+..|+..+..++..+.+.+..+...|+|+.|+.+|++.+.+++.+|+.+|.||.... +++
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 35788899999999999999999999999999999999999999999999999999999999999999998754 378
Q ss_pred HHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc--------cC------ChHHH
Q 008585 231 NWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ--------TG------DSVSQ 295 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~--------~~------~~~~~ 295 (560)
-.+.+.++++.++++|+. .|.++++....+|+||+.++..+..++. ..+..|..-.- .+ +..+-
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 888999999999999997 6999999999999999998666655543 23333333221 11 24566
Q ss_pred HHHHHHHHHhcC-CchhHHHHHh-cCcHHHHHHHhhc------CCchhHHHHHHHHHHHHccCCh-----hHHHHHHhC-
Q 008585 296 AAAACTLKNISA-VPEVRQMLAE-EGIVSVMIKLLDC------GILLGSKEYAAECLQNLTASNE-----NLRRSVVSE- 361 (560)
Q Consensus 296 ~~a~~aL~nLa~-~~~~~~~i~e-~g~v~~L~~lL~~------~~~~~v~~~a~~~L~~La~~~~-----~~~~~i~~~- 361 (560)
..+.++|+|++. ..+.++.|.+ .|.|..|+.++.+ .++ ...++|..+|.|+...-+ ..++.....
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~-K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDS-KSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccc-hhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 899999999987 7799999998 8999999998862 233 688999999999987322 111111110
Q ss_pred ---------------------------------------C--------CHHHHHHhcc---CCccHHHHHHHHHHhhcc-
Q 008585 362 ---------------------------------------G--------GIRSLLAYLD---GPLPQESAVGALRNLVGS- 390 (560)
Q Consensus 362 ---------------------------------------g--------~l~~L~~ll~---~~~~~~~a~~~L~nla~~- 390 (560)
| ++...+.++. ++.+.+.+.++|-|++..
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 0 1333233332 256789999999999981
Q ss_pred -----ccH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC------CHHHH
Q 008585 391 -----VSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK------PNSVR 458 (560)
Q Consensus 391 -----~~~-~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~------~~~v~ 458 (560)
..+ ..+..+.+.++|+++|+.+++.|...++.+|.||+.+..++..|. .++++.|++.+... +.++-
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHH
Confidence 122 233678889999999999999999999999999999999999997 56799999999643 25677
Q ss_pred HHHHHHHHHhc-CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHH
Q 008585 459 EVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYL 530 (560)
Q Consensus 459 ~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L 530 (560)
..++.+|.++. ....|.+.++ +.++++.|+-+..+...+...+++...+..|-.+++.|..+...|+-+..
T Consensus 630 ~~vc~tl~niv~~~~~nAkdl~-~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~~q~~ 701 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVLNAKDLL-EIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKKGFKQQD 701 (717)
T ss_pred HHHHHhHHHHHHHhHHHHHHHH-hccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHH
Confidence 88999999999 5667777777 57889999999888655467779999999999999999999888887754
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.82 E-value=2.6e-18 Score=180.17 Aligned_cols=338 Identities=19% Similarity=0.221 Sum_probs=274.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC---hhhHHH
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS---AEMARA 273 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~---~~~~~~ 273 (560)
++..+.+|.+.++.+|-.|+..+..++..+. .+..+.+.|+|+.|+.+|...+.+++..|+++|.||... .+|+-.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 6777889999999999999999999998765 888999999999999999999999999999999999763 458899
Q ss_pred HHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcC---------C----chhHHHH
Q 008585 274 IVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG---------I----LLGSKEY 339 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~---------~----~~~v~~~ 339 (560)
+.+.++++.++++++. .|.+++.....+||||++++..+..++.. ++..|..-+-.+ + +..+-.+
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n 393 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRN 393 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeeh
Confidence 9999999999999986 89999999999999999998888888774 555555544211 1 1267889
Q ss_pred HHHHHHHHccCChhHHHHHHh-CCCHHHHHHhccC--------CccHHHHHHHHHHhhc--c-ccH----H---------
Q 008585 340 AAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--------PLPQESAVGALRNLVG--S-VSQ----E--------- 394 (560)
Q Consensus 340 a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--------~~~~~~a~~~L~nla~--~-~~~----~--------- 394 (560)
+..||.|++....+.|+.+.+ .|.|+.|+.++++ ....++|+.+++|++. . +.. .
T Consensus 394 ~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~ 473 (717)
T KOG1048|consen 394 VTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLP 473 (717)
T ss_pred hhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccc
Confidence 999999999977777888876 7889999998863 4568999999999987 1 100 0
Q ss_pred -----------------H----------------------HHhCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCC----
Q 008585 395 -----------------V----------------------LISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS---- 430 (560)
Q Consensus 395 -----------------~----------------------l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~---- 430 (560)
. +....+|..-..+|. +.++.+.+.++.+|-|++-.
T Consensus 474 ~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~ 553 (717)
T KOG1048|consen 474 GVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTW 553 (717)
T ss_pred cCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcc
Confidence 0 011122333344444 35688999999999999843
Q ss_pred -hhHHHHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCc-----hhhHHH
Q 008585 431 -AEMKKLV-GEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ-----NTAKKY 503 (560)
Q Consensus 431 -~~~~~~i-~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~-----~~~~~~ 503 (560)
...+..+ .++.+.+.|+++++.++..+...++.+|.||+.+..|+..+- ..+++.|+..|..... +.....
T Consensus 554 ~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig--k~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 554 SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG--KYAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh--cchHHHHHHhCcCCCCCcCchHHHHHH
Confidence 3455555 677899999999999999999999999999999999977766 4889999999987633 445667
Q ss_pred HHHHHHHhC-CChhhHHHHHHcChhHHHHHhhccCc
Q 008585 504 AVACLASLS-PSKKCKKLMISYGAIGYLKKLSEMDI 538 (560)
Q Consensus 504 a~~~L~~L~-~~~~~r~~i~~~g~i~~L~~L~~~~~ 538 (560)
++..+.++. .+..+.+.+.+.++++.|+.|.....
T Consensus 632 vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 632 VCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred HHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccC
Confidence 778888887 57799999999999999999987743
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.82 E-value=5.4e-17 Score=172.56 Aligned_cols=367 Identities=18% Similarity=0.222 Sum_probs=289.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCC
Q 008585 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEG 237 (560)
Q Consensus 159 Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g 237 (560)
++..|++.+.+....++..|..+....+-. .+ ..+..+.|...|.++++.+|..+++.|+++..+++ ....+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~--~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPD--SL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHH--HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 888899888888888888888887643311 11 44678999999999999999999999999998876 566777889
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHH
Q 008585 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLA 316 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~ 316 (560)
+++.++..+.+++..+...|+.+|.+++.++.....++..+.+..|..++...++.+|..+..++.+++. +++....+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999988888888899999999999988888999999999999985 668888888
Q ss_pred hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--Ccc------HHHHHHHHHHhh
Q 008585 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLP------QESAVGALRNLV 388 (560)
Q Consensus 317 e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~------~~~a~~~L~nla 388 (560)
+.|+++.++..+++++. -++.+++++|..|+.. +...+++.+.|+++.|..++.+ .++ ....+.+.++++
T Consensus 200 ~sgll~~ll~eL~~dDi-Lvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDI-LVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred hccHHHHHHHHhcCccH-HHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 89999999999999664 6899999999999994 5557899999999999999965 121 234457777777
Q ss_pred ccccHHHHHh--CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHH-HhcC-----CHHHHHHHHccCCHHHHHH
Q 008585 389 GSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLV-GEAG-----CTPLLIKLLEAKPNSVREV 460 (560)
Q Consensus 389 ~~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i-~~~g-----~i~~Lv~ll~s~~~~v~~~ 460 (560)
.. ....+.. ..++..+.+++.+.|+..+..|..+++.++.+.+.+..+ ...| .+...-....+...++|..
T Consensus 278 ~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r 356 (503)
T PF10508_consen 278 RV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLR 356 (503)
T ss_pred hc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHH
Confidence 63 1222221 356777788888999999999999999999998888888 4432 3444444455677889999
Q ss_pred HHHHHHHhcCCChh---------hHHHhh--hCCChH-HHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHH-HHcChh
Q 008585 461 AAQAISSLVTLPQN---------CREVKR--DDKSVP-NLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLM-ISYGAI 527 (560)
Q Consensus 461 A~~aL~~L~~~~~~---------~~~~~~--~~~~v~-~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i-~~~g~i 527 (560)
+..+|.++...... .+..+. ..+... .++.+++. |+++++..+...+..|+.++-+.+.| ...|++
T Consensus 357 ~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q-PF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfi 435 (503)
T PF10508_consen 357 ALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ-PFPELRCAAYRLLQALAAQPWGQREICSSPGFI 435 (503)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHhCccHH
Confidence 99999999632221 111111 122233 55566654 57789999999999999999555545 567888
Q ss_pred HHHHH
Q 008585 528 GYLKK 532 (560)
Q Consensus 528 ~~L~~ 532 (560)
++|.+
T Consensus 436 e~lld 440 (503)
T PF10508_consen 436 EYLLD 440 (503)
T ss_pred hhhcC
Confidence 88874
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2e-14 Score=136.28 Aligned_cols=321 Identities=17% Similarity=0.244 Sum_probs=252.1
Q ss_pred hCCCHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhC-C
Q 008585 194 GRSNIAALVQLLT---ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSM-S 267 (560)
Q Consensus 194 ~~g~v~~Lv~lL~---~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~-~ 267 (560)
..|..+.++.++. +++..+..+++.+|..+....+ .+.+..++..++.+|... +.++-.....++..-+. +
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 4566666665543 4556777888888888876553 566778899999998764 66677777778877765 6
Q ss_pred hhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchh----------HHHHHhcCcHHHHHHHhhcCCchhH
Q 008585 268 AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEV----------RQMLAEEGIVSVMIKLLDCGILLGS 336 (560)
Q Consensus 268 ~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~----------~~~i~e~g~v~~L~~lL~~~~~~~v 336 (560)
+.+++.|++.++.+.+...+.. +...+.+..+++++-|..++++ .+.|..+|++..|++.+.-+-+..+
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~ 258 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS 258 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH
Confidence 7789999999999999867654 5557889999999999765443 4667788899999999987655578
Q ss_pred HHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC---c---cHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHH
Q 008585 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP---L---PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVL 409 (560)
Q Consensus 337 ~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~---~---~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL 409 (560)
....+.+|..|+-.+ +.++.+.+.||+..+++++++. . .-..++..|+.++. .+.+..+++.|+.+.++.++
T Consensus 259 L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~ 337 (461)
T KOG4199|consen 259 LVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLA 337 (461)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHH
Confidence 889999999999864 5578899999999999999772 2 34578888999988 67889999999999999987
Q ss_pred hc--CCHHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCChhhHHHhhhCCC
Q 008585 410 KA--GSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQAISSLVTLPQNCREVKRDDKS 484 (560)
Q Consensus 410 ~~--~~~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~ 484 (560)
.. .+|.|-+.++.+++-|+ +.|++...+++.|+-...++.++.. ...+|..|++++.||+.+..+.+..+- +.+
T Consensus 338 ~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~G 416 (461)
T KOG4199|consen 338 LRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANG 416 (461)
T ss_pred HHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hcc
Confidence 53 67999999999999999 7799999999999999999999754 455899999999999966555444443 367
Q ss_pred hHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHH
Q 008585 485 VPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKL 520 (560)
Q Consensus 485 v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~ 520 (560)
++.|+..-..+ +++....+-.+|..|--+..+|..
T Consensus 417 iE~Li~~A~~~-h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 417 IEKLIRTAKAN-HETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred HHHHHHHHHhc-CccHHHHHHHHHHhcCcchhhHHH
Confidence 89998887765 334666777778777666655543
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=4.7e-16 Score=169.30 Aligned_cols=318 Identities=18% Similarity=0.186 Sum_probs=253.7
Q ss_pred hHHHHHHHHccC---CHHHHHHHHHHHHHHHhhChHHHHHHhhCCC----------HHHHHHhhcCCC-------HHHHH
Q 008585 155 NTRELLARLQIG---HLEAKHKALDSLVEAMKEDEKNVLAVMGRSN----------IAALVQLLTATS-------PRIRE 214 (560)
Q Consensus 155 ~i~~Ll~~L~~~---~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~----------v~~Lv~lL~~~~-------~~v~~ 214 (560)
-++-|+++|+-. +.+.+..|-.+|.++....++....=.+... -..+-.++.... .+=+.
T Consensus 236 CLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~l 315 (2195)
T KOG2122|consen 236 CLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQL 315 (2195)
T ss_pred chHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhh
Confidence 367778888643 3466888888999998765543221111111 122222333221 22244
Q ss_pred -HHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC------------CHHHHHHHHHHHHHhhCC-hhhHHHHH-hCCC
Q 008585 215 -KTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG------------STVGKEKATISLQRLSMS-AEMARAIV-GHGG 279 (560)
Q Consensus 215 -~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~~La~~-~~~~~~l~-~~g~ 279 (560)
.|+.+|..++.++++|..+.+.|++..+-+++.-. ...+|.++..+|.||+.. ..|+..++ ..|+
T Consensus 316 caA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 316 CAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 67889999999999999999999999999987521 456899999999999885 55666666 4799
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHH
Q 008585 280 VRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS 357 (560)
Q Consensus 280 i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~ 357 (560)
++.+|..|.+...++..-.+.+|+||+= +...++.+-|.|-+..|+...............+.+||||+.+..+++..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999998888999999999999983 44677888889999998887543332267888999999999988888988
Q ss_pred HHh-CCCHHHHHHhccC------CccHHHHHHHHHHhhc-----cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 008585 358 VVS-EGGIRSLLAYLDG------PLPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC 425 (560)
Q Consensus 358 i~~-~g~l~~L~~ll~~------~~~~~~a~~~L~nla~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (560)
|.. .|++..|+.+|.. -.+.+.+-++|+|.+. ...++.+.+.+.+..|+..|++.+-.+..++|.+||
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW 555 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW 555 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence 887 7889999999954 3467899999999987 356778889999999999999999999999999999
Q ss_pred HHh-CChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 008585 426 RVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472 (560)
Q Consensus 426 ~La-~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~ 472 (560)
||+ ++++.++.+++.|.++.|..++++++..+.+-++.+|.||..+.
T Consensus 556 NLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 556 NLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 997 77999999999999999999999999999999999999998655
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.69 E-value=1.1e-13 Score=147.18 Aligned_cols=337 Identities=19% Similarity=0.186 Sum_probs=265.5
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
.....+.+...|.+.++.+|.-++..+..++.+++.....+.+.+.++.++.+|.+++..+...|+.+|..++.++....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 34456777788899999999999999999998887767777788999999999999999999999999999999888777
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCch
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE 310 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~ 310 (560)
.++..+.++.|..++...+..+|..+..++.+++. +++....+...|.++.++..+.+.|.-++..++.+|..|+..+.
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 88899999999999999888899999999999976 57777788889999999999999999999999999999999999
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCchh----HH-HHHHHHHHHHccCChhHHHHHHh--CCCHHHHHHhccC--CccHHHHH
Q 008585 311 VRQMLAEEGIVSVMIKLLDCGILLG----SK-EYAAECLQNLTASNENLRRSVVS--EGGIRSLLAYLDG--PLPQESAV 381 (560)
Q Consensus 311 ~~~~i~e~g~v~~L~~lL~~~~~~~----v~-~~a~~~L~~La~~~~~~~~~i~~--~g~l~~L~~ll~~--~~~~~~a~ 381 (560)
..+.+.+.|+++.+..++.+..... +. -..+...++++..++. .+.. ...+..+..++++ +..+..|+
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~---~v~~~~p~~~~~l~~~~~s~d~~~~~~A~ 311 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ---EVLELYPAFLERLFSMLESQDPTIREVAF 311 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 9999999999999999997643312 12 2233667777764332 1111 2234555666655 66789999
Q ss_pred HHHHHhhc-cccHHHH-HhC-Cc----HHHHHHHHhcCCHHHHHHHHHHHHHHhCC--h-------hHHHHHHh---cCC
Q 008585 382 GALRNLVG-SVSQEVL-ISL-GF----FPRLVHVLKAGSLGAQQAAASALCRVCTS--A-------EMKKLVGE---AGC 442 (560)
Q Consensus 382 ~~L~nla~-~~~~~~l-~~~-~~----i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~-------~~~~~i~~---~g~ 442 (560)
.+++.++. .++...+ ... +. +..+.....++..+++..+..++.++-.. + ...+...+ .+.
T Consensus 312 dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~ 391 (503)
T PF10508_consen 312 DTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSP 391 (503)
T ss_pred HHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCc
Confidence 99999998 4566666 332 23 44444455567789999999999999432 1 11222222 234
Q ss_pred HH-HHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhc
Q 008585 443 TP-LLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQL 491 (560)
Q Consensus 443 i~-~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~l 491 (560)
.. .++.+++.+-+++|..+...|..|+.++-..+.+....|.++.++.-
T Consensus 392 ~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr 441 (503)
T PF10508_consen 392 LSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDR 441 (503)
T ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCC
Confidence 44 77888888889999999999999999999999988877777777644
No 18
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.68 E-value=1.1e-14 Score=141.92 Aligned_cols=371 Identities=15% Similarity=0.082 Sum_probs=281.9
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC----C---HHHHHHHHHHHHHHhcCCc-hHHHHHh
Q 008585 164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT----S---PRIREKTVTVICSLAESGS-CENWLVS 235 (560)
Q Consensus 164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~----~---~~v~~~A~~~L~~La~~~~-~~~~l~~ 235 (560)
.+.+.++-.++.++|.+++.++.+++..+.+.||-+.++.+|+.. + .+.-..+...|.|-..+.+ .+.++.+
T Consensus 97 sS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~ 176 (604)
T KOG4500|consen 97 SSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVAD 176 (604)
T ss_pred CCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHh
Confidence 566788999999999999999999999999999988788877642 2 3445556667777766554 8999999
Q ss_pred CCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhC-Chhh-HHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCch
Q 008585 236 EGVLPPLIRLVESG--STVGKEKATISLQRLSM-SAEM-ARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPE 310 (560)
Q Consensus 236 ~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~-~~~~-~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~ 310 (560)
.|+++.|...+.-+ +...-+.......+|.. ..++ .....+......+++++.+ -.++...+....|...+.++.
T Consensus 177 ~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~ 256 (604)
T KOG4500|consen 177 AGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL 256 (604)
T ss_pred cccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc
Confidence 99999999887654 55555555555555533 2332 2334456667788888865 567888999999999999999
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCch-------hHHHHHHHHHHHHccCChhHHHHHHhCC-CHHHHHHhccC--CccHHHH
Q 008585 311 VRQMLAEEGIVSVMIKLLDCGILL-------GSKEYAAECLQNLTASNENLRRSVVSEG-GIRSLLAYLDG--PLPQESA 380 (560)
Q Consensus 311 ~~~~i~e~g~v~~L~~lL~~~~~~-------~v~~~a~~~L~~La~~~~~~~~~i~~~g-~l~~L~~ll~~--~~~~~~a 380 (560)
++-.+++.|.+..++++++.-.+. ..-..++....-+..+++.. +.+...+ .++.+..-+++ .+.+..+
T Consensus 257 Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~d~~l~t~g 335 (604)
T KOG4500|consen 257 VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSDDSNLITMG 335 (604)
T ss_pred eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCCchhHHHHH
Confidence 999999999999999999862211 12223444444455566654 4555555 67777777876 4567788
Q ss_pred HHHHHHhhc-cccHHHHHhCCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCC
Q 008585 381 VGALRNLVG-SVSQEVLISLGFFPRLVHVLKA-----GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP 454 (560)
Q Consensus 381 ~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~-----~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~ 454 (560)
.-+|+|+++ .+....+++.+++..|+..|.. ++.++|..++.+|+|+.....++..+..+|..+.++.+++...
T Consensus 336 ~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ 415 (604)
T KOG4500|consen 336 SLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLAS 415 (604)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcC
Confidence 889999999 6677888999999999998854 5689999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCh-hhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChh---hHHHHHHcChhHHH
Q 008585 455 NSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKK---CKKLMISYGAIGYL 530 (560)
Q Consensus 455 ~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~---~r~~i~~~g~i~~L 530 (560)
+.+...-...+..+.-..+ -..+..++...+..|+..-+++++..+.......+..+.++.+ ....+.+.|+++..
T Consensus 416 ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~ 495 (604)
T KOG4500|consen 416 PPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEK 495 (604)
T ss_pred CcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHH
Confidence 9999999999998875444 4566666667778888888888766566666667776666543 44556678888877
Q ss_pred HHhhc
Q 008585 531 KKLSE 535 (560)
Q Consensus 531 ~~L~~ 535 (560)
+.+.-
T Consensus 496 Vsm~t 500 (604)
T KOG4500|consen 496 VSMFT 500 (604)
T ss_pred HHHHH
Confidence 76643
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=1.5e-14 Score=157.83 Aligned_cols=352 Identities=18% Similarity=0.216 Sum_probs=266.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCCc----hH
Q 008585 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS---PRIREKTVTVICSLAESGS----CE 230 (560)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~---~~v~~~A~~~L~~La~~~~----~~ 230 (560)
.++..+...+. .+-...|.++.. +++....++..|.++.|+++|-.++ .+.+..|-.+|.++....+ .|
T Consensus 201 sllsml~t~D~---ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R 276 (2195)
T KOG2122|consen 201 SLLSMLGTDDE---EEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR 276 (2195)
T ss_pred HHhhhcccCCH---HHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence 44455544444 455566777665 5666677888999999999997654 6788889999999987653 12
Q ss_pred HHHHhCCCHHHHHH-------hhhcC-------CHHHHH-HHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC-----
Q 008585 231 NWLVSEGVLPPLIR-------LVESG-------STVGKE-KATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG----- 290 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~-------lL~~~-------~~~~~~-~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~----- 290 (560)
..+.-.-++..+.. .+... +..-+. .|..+|.+++.+++.+..+.+-|++.++-+++.-.
T Consensus 277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhg 356 (2195)
T KOG2122|consen 277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHG 356 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 22111111221111 12211 222333 67788999999999999999999999999987521
Q ss_pred -------ChHHHHHHHHHHHHhcCCc-hhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH-h
Q 008585 291 -------DSVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV-S 360 (560)
Q Consensus 291 -------~~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~-~ 360 (560)
...+|+.+..+|.||...+ .|+..+.. .|++.+++..|.+..+ ++....+.+|.||+...+.+...++ +
T Consensus 357 p~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE 435 (2195)
T KOG2122|consen 357 PETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRE 435 (2195)
T ss_pred CCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHh
Confidence 2368999999999999754 67777765 8999999999998886 7888889999999986655555555 6
Q ss_pred CCCHHHHHHhc-cC--CccHHHHHHHHHHhhc--cccHHHHH-hCCcHHHHHHHHhcC----CHHHHHHHHHHHHHHhCC
Q 008585 361 EGGIRSLLAYL-DG--PLPQESAVGALRNLVG--SVSQEVLI-SLGFFPRLVHVLKAG----SLGAQQAAASALCRVCTS 430 (560)
Q Consensus 361 ~g~l~~L~~ll-~~--~~~~~~a~~~L~nla~--~~~~~~l~-~~~~i~~Lv~lL~~~----~~~v~~~A~~aL~~La~~ 430 (560)
.|-+-.|.... .. .......+.+|+||+. .+++..|. -.|.+..|+.+|... ...+.+.+-.+|.|.+..
T Consensus 436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~ 515 (2195)
T KOG2122|consen 436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL 515 (2195)
T ss_pred hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence 88888888774 33 5678899999999998 46666554 458899999999754 357778888899988754
Q ss_pred ----hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHH
Q 008585 431 ----AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVA 506 (560)
Q Consensus 431 ----~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~ 506 (560)
+++|+.+.+.+++..|++.|++.+..+.-.+|.+||||....+.-.++++|.+.+..|..++++... .+.+.+..
T Consensus 516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhk-MIa~GSaa 594 (2195)
T KOG2122|consen 516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHK-MIAMGSAA 594 (2195)
T ss_pred hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhh-hhhhhHHH
Confidence 8899999999999999999999999999999999999997766667888899999999999999843 45557777
Q ss_pred HHHHhCCCh
Q 008585 507 CLASLSPSK 515 (560)
Q Consensus 507 ~L~~L~~~~ 515 (560)
+|.||....
T Consensus 595 ALrNLln~R 603 (2195)
T KOG2122|consen 595 ALRNLLNFR 603 (2195)
T ss_pred HHHHHhcCC
Confidence 787776544
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.6e-13 Score=135.66 Aligned_cols=405 Identities=15% Similarity=0.155 Sum_probs=299.1
Q ss_pred hhhhHHhhhhhhhhhhchhhHHhhCCCCCCCcccccCCCCCchhhhh--hchHHHHHHHHccCCHHHHHHHHHHHHHHHh
Q 008585 106 QSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATT--HGNTRELLARLQIGHLEAKHKALDSLVEAMK 183 (560)
Q Consensus 106 ~s~~~~~~~~l~~~~~d~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~--~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~ 183 (560)
..+.|.+.-++...+..-..+++.... .+.-..........+ +..|.-|+..|...+.+...-....|..|.-
T Consensus 259 k~e~dr~~kklk~~~~KQeqLLrva~y-----lLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI 333 (791)
T KOG1222|consen 259 KEEIDRLNKKLKTAIRKQEQLLRVAVY-----LLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI 333 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh
Confidence 446666666666666655555554321 111111111112222 4567788889988887766666666666654
Q ss_pred hChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008585 184 EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR 263 (560)
Q Consensus 184 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 263 (560)
- .+|+..+.+.|.|+.|+++....+++.+...+..|.+++.+...|..++..|.+|.+..+|.++.. ...|...|+.
T Consensus 334 f-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh 410 (791)
T KOG1222|consen 334 F-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYH 410 (791)
T ss_pred h-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhh
Confidence 3 346667778899999999999999999999999999999999999999999999999999988654 3457889999
Q ss_pred hhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh-hcCCchhHHHHHH
Q 008585 264 LSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAA 341 (560)
Q Consensus 264 La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL-~~~~~~~v~~~a~ 341 (560)
++.+++.+..+....+++.+++.+-+ .+.++-........|+|-+..+.+.+.+-.++..|++-. +..+. . -.
T Consensus 411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~--l---Lm 485 (791)
T KOG1222|consen 411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL--L---LM 485 (791)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch--H---HH
Confidence 99999999999999999999877644 344444444444569998888989999988888888764 33332 2 24
Q ss_pred HHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhcc--ccHHHHHhCCcHHHHHHHHhcC--CH
Q 008585 342 ECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAG--SL 414 (560)
Q Consensus 342 ~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~~--~~~~~l~~~~~i~~Lv~lL~~~--~~ 414 (560)
..+.|++.+....+..+++- +..|...+.. ...-..+++.++|+..+ +....+.+...+|++-..|..+ ..
T Consensus 486 K~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~ed 563 (791)
T KOG1222|consen 486 KVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADED 563 (791)
T ss_pred HHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccch
Confidence 56788888766555555542 3333444432 45667888888888873 5567777889999999999864 46
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhcc
Q 008585 415 GAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLL 492 (560)
Q Consensus 415 ~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL 492 (560)
+++.....+++.+++.......+..+|.++.|++++++. +.+.......+...+..|...++.++++...-.+|+.++
T Consensus 564 dLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLM 643 (791)
T KOG1222|consen 564 DLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLM 643 (791)
T ss_pred hhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 788888999999999999999999999999999999864 444555566666777778888888999888889999999
Q ss_pred CCCCchhhHHHHHHHHHHhCC-ChhhHHHHHHcCh
Q 008585 493 DPSPQNTAKKYAVACLASLSP-SKKCKKLMISYGA 526 (560)
Q Consensus 493 ~~~~~~~~~~~a~~~L~~L~~-~~~~r~~i~~~g~ 526 (560)
++.+. ++++.+=.+|--++. +++..++|..+.+
T Consensus 644 HDkN~-eiRkVCDn~LdIiae~d~EWAKrI~~EkF 677 (791)
T KOG1222|consen 644 HDKNA-EIRKVCDNALDIIAEHDKEWAKRIAGEKF 677 (791)
T ss_pred hcccH-HHHHHHHHHHHHHHHhhHHHHHHHhhhhc
Confidence 99854 477777777777775 4578888876544
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.58 E-value=2.4e-13 Score=130.20 Aligned_cols=192 Identities=20% Similarity=0.234 Sum_probs=165.7
Q ss_pred HhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh
Q 008585 192 VMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM 270 (560)
Q Consensus 192 i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 270 (560)
+.+.+.++.|+.+|+. .+|.+++.+..++++.+.++.++..+.+.|+++.+..+|.++++.+++.|.++|.+++.+.++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 3566778999999986 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585 271 ARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (560)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La 348 (560)
+..+-. .++.+++...+ -+..+|..++++|.||+..++.+..+.. .++.++.++.+|+. .++.+++.+|.||+
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~-~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSE-KTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCCh-HHHHHHHHHHHHhc
Confidence 887743 35655554433 3678999999999999988777777754 79999999999997 89999999999999
Q ss_pred cCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc
Q 008585 349 ASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG 389 (560)
Q Consensus 349 ~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~ 389 (560)
.+ +...+.++..+++..++.+++. .+....++..+.|+..
T Consensus 163 ~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 163 EN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred cC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 85 5556778888899999999976 4567788888999865
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.58 E-value=9.6e-13 Score=128.66 Aligned_cols=302 Identities=11% Similarity=0.084 Sum_probs=236.2
Q ss_pred HhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHHHHHhCCCHHHHHHhhhcC-------CHHHHHHHHHHHHH
Q 008585 192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQR 263 (560)
Q Consensus 192 i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~ 263 (560)
-++.+.++.|.+..++++.++.++..++|+|++.+. +.|..+.+.|+-..++++|+.. +.+....++..|.|
T Consensus 83 ~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N 162 (604)
T KOG4500|consen 83 CIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN 162 (604)
T ss_pred hhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999876 4999999999988888888753 23455566778888
Q ss_pred hhCC-hhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHhhcCCchhHHH
Q 008585 264 LSMS-AEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLDCGILLGSKE 338 (560)
Q Consensus 264 La~~-~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~ 338 (560)
-..+ ++.+....+.|+++.|..++.- .+............|+.+. +.......+......+++++.+....+..+
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 7765 6778889999999999888753 3445556666666777642 234556667888889999998765557899
Q ss_pred HHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-Cc--cHHHHHHHHH-------Hhhc-cccHHHHHhCC-cHHHHH
Q 008585 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PL--PQESAVGALR-------NLVG-SVSQEVLISLG-FFPRLV 406 (560)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~--~~~~a~~~L~-------nla~-~~~~~~l~~~~-~i~~Lv 406 (560)
.+.+.|...+.+ +..+-.+.+.|.+..+..+++. +. -...+...+. -+.. .++.+.+...+ ++..++
T Consensus 243 M~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~ 321 (604)
T KOG4500|consen 243 MIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLE 321 (604)
T ss_pred HHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHH
Confidence 999999998875 5667778899999998888865 21 1222222222 2222 34545566665 899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc-----cCCHHHHHHHHHHHHHhcCCChhhHHHhhh
Q 008585 407 HVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLVTLPQNCREVKRD 481 (560)
Q Consensus 407 ~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~-----s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~ 481 (560)
..+++.+...+.....+|+|+++.++++..+.+.+.+..|++.+. .++.+.+..++.||.+++.-.+|+..++.
T Consensus 322 sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~- 400 (604)
T KOG4500|consen 322 SWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP- 400 (604)
T ss_pred HHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc-
Confidence 999999999999999999999999999999999999999999995 35677899999999999988899888774
Q ss_pred CCChHHHHhccCCC
Q 008585 482 DKSVPNLVQLLDPS 495 (560)
Q Consensus 482 ~~~v~~Lv~lL~~~ 495 (560)
.|.++.++..++..
T Consensus 401 aGvteaIL~~lk~~ 414 (604)
T KOG4500|consen 401 AGVTEAILLQLKLA 414 (604)
T ss_pred cchHHHHHHHHHhc
Confidence 68888888888765
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=7e-13 Score=144.41 Aligned_cols=453 Identities=17% Similarity=0.181 Sum_probs=291.6
Q ss_pred chhhHHHHHHhcccccccccc-CCCCCCCchhHHHHHHHHHHHHHHHH----HHHHHh-cCCCCCCcchhhhhhHHhhhh
Q 008585 42 GRWKMIISKLEQIPSHLSDLS-SHPCFSKNALCREQLQAVSKTLKEAI----ELAELC-VKEKYEGKLRMQSDLDALSGK 115 (560)
Q Consensus 42 ~~~~~i~~k~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~----~l~~~c-~~~~~~~~~~~~s~~~~~~~~ 115 (560)
-.=..||.|++++.+.+..-- .. .|| ++++.+.+++.... +.+-+- ..-.+.-....+.++|.+...
T Consensus 91 E~~~~vr~k~~dviAeia~~~l~e-~WP------ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~l 163 (1075)
T KOG2171|consen 91 ETEPSVRHKLADVIAEIARNDLPE-KWP------ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRL 163 (1075)
T ss_pred ccchHHHHHHHHHHHHHHHhcccc-chH------HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHH
Confidence 344578999999999886544 22 598 89999888765322 111111 000111113445577777778
Q ss_pred hhhhhhchhhHHhhCCCCCCCcccccCCCCCchhhhhhchHHHHHHHH----ccCCHHHHHHHHHHHHHHHhhChHHHHH
Q 008585 116 LDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARL----QIGHLEAKHKALDSLVEAMKEDEKNVLA 191 (560)
Q Consensus 116 l~~~~~d~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~i~~Ll~~L----~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 191 (560)
|...+.|.+.-+|+..+..-.+.....+.........+..++.++..+ +.|+.+.-..++..|.+++...++..+.
T Consensus 164 f~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~ 243 (1075)
T KOG2171|consen 164 FSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRP 243 (1075)
T ss_pred HHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHH
Confidence 888888777666654442211112222112222333455666666555 5677777788999999999888876554
Q ss_pred HhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCc--hHH-HHHhCCCHHHHHHhhhcC----------------C
Q 008585 192 VMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS--CEN-WLVSEGVLPPLIRLVESG----------------S 250 (560)
Q Consensus 192 i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~--~~~-~l~~~g~i~~Lv~lL~~~----------------~ 250 (560)
... ..++..+.+.++.+ ..+|..|+.+|..+++..+ +|. .......++.++.++.+. .
T Consensus 244 ~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~ 322 (1075)
T KOG2171|consen 244 HLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDE 322 (1075)
T ss_pred HHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccc
Confidence 443 45777777777654 8999999999999998854 221 112223556666665432 1
Q ss_pred HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHh
Q 008585 251 TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLL 328 (560)
Q Consensus 251 ~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL 328 (560)
......|..+|..++.+-..+..+ .-.++.+-.++++.++.-|++++.+|..++. ++.+.|.. ..+++.+++.+
T Consensus 323 ~~~~~~A~~~lDrlA~~L~g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--Gc~~~m~~~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 323 ETPYRAAEQALDRLALHLGGKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAE--GCSDVMIGNLPKILPIVLNGL 398 (1075)
T ss_pred cCcHHHHHHHHHHHHhcCChhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhc
Confidence 124556788888887763322211 1123667788889999999999999999886 23333333 56889999999
Q ss_pred hcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhccccHHHH--HhCCcHH
Q 008585 329 DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVL--ISLGFFP 403 (560)
Q Consensus 329 ~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~~~~~~~l--~~~~~i~ 403 (560)
+++++ .||+.|+.++++++.+-..--+.-.+.-.++.|+..+++ +.++.+|..++-|+........+ .-.+++.
T Consensus 399 ~Dphp-rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHP-RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCH-HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99997 899999999999998544333445556677888888877 57889999999999873333333 2245566
Q ss_pred HHH-HHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCC-HH---HHHHHHHHHHHhcCCChhhH
Q 008585 404 RLV-HVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKP-NS---VREVAAQAISSLVTLPQNCR 476 (560)
Q Consensus 404 ~Lv-~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~-~~---v~~~A~~aL~~L~~~~~~~~ 476 (560)
+++ .+++++.+.+|+.++.+|+..+.. ..+.+++ .-.+|.|.+.++..+ .+ +|....+++.-++. .-++.
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~-AVGke 554 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR-AVGKE 554 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH-Hhhhh
Confidence 343 445567899999999999999854 4555555 456999999998655 33 56666677776652 22223
Q ss_pred HHhhhCCChHHHHhccCCC------CchhhHHHHHHHHHHhCC
Q 008585 477 EVKRDDKSVPNLVQLLDPS------PQNTAKKYAVACLASLSP 513 (560)
Q Consensus 477 ~~~~~~~~v~~Lv~lL~~~------~~~~~~~~a~~~L~~L~~ 513 (560)
+|... ...+++++-.. +++..+.|....+.++|+
T Consensus 555 ~F~~~---a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 555 KFLPL---AEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred hhhHh---HHHHHHHHHhhcccchhhccccHHHHHHHHHHHHH
Confidence 33322 12333332221 344578888998888874
No 24
>PRK09687 putative lyase; Provisional
Probab=99.53 E-value=1.4e-12 Score=127.83 Aligned_cols=253 Identities=18% Similarity=0.152 Sum_probs=199.5
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
..+..|+..|...+..++..|+..|..+- +...++.+..+++++++.+|..|+++|+.|...+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 34788899999999999999999987652 224577788899999999999999999999764432
Q ss_pred HhCCCHHHHHHh-hhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Q 008585 234 VSEGVLPPLIRL-VESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312 (560)
Q Consensus 234 ~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~ 312 (560)
....++.|..+ +++.++.++..++.+|.++....... ....+..+...+.++++.+|..++.+|.++..
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----- 157 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----- 157 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence 12356777776 67789999999999999995432211 11133567777888899999999999976643
Q ss_pred HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhcc
Q 008585 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS 390 (560)
Q Consensus 313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~ 390 (560)
..+++.|+.++.++++ .++..|+.+|+.+..+++.. ++.|+..+.+ +.++..|+.+|+.+-.
T Consensus 158 -----~~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~~~~---------~~~L~~~L~D~~~~VR~~A~~aLg~~~~- 221 (280)
T PRK09687 158 -----EAAIPLLINLLKDPNG-DVRNWAAFALNSNKYDNPDI---------REAFVAMLQDKNEEIRIEAIIGLALRKD- 221 (280)
T ss_pred -----HHHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCCHHH---------HHHHHHHhcCCChHHHHHHHHHHHccCC-
Confidence 3478999999999887 89999999999995444432 6778888876 6789999999988752
Q ss_pred ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHH
Q 008585 391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISS 467 (560)
Q Consensus 391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~ 467 (560)
..+++.|++.|++++ ++..++.+|+++... ..+|.|.+++. ..+..++..|.++|..
T Consensus 222 --------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 222 --------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred --------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 357999999999876 677899999998753 45899999997 7888999999998864
No 25
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=6e-12 Score=124.62 Aligned_cols=319 Identities=14% Similarity=0.142 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCCh
Q 008585 213 REKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS 292 (560)
Q Consensus 213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~ 292 (560)
...|+..|.+++++-.....+...+.+..|++.|...+.+....+...|.+|+...+|+..+.+.|.+..|++++...+|
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~ 359 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP 359 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH
Confidence 34578899999999888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc
Q 008585 293 VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372 (560)
Q Consensus 293 ~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~ 372 (560)
+++...+..|.|++.+.+++.+++..|.+|.+..++.++.. ...|+..|..++.+ +..+.++.....++.+.+.+-
T Consensus 360 dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 360 DLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred HHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987664 45577788888775 455777778888998888763
Q ss_pred C---CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHhCChh-HHHHHHhcCCHHHH
Q 008585 373 G---PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVH-VLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGCTPLL 446 (560)
Q Consensus 373 ~---~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~A~~aL~~La~~~~-~~~~i~~~g~i~~L 446 (560)
. ..+....+..--|+|. ..+.+.+.+-.++..|++ .++..++-+ ...++|++.++. .+..+++ .+..|
T Consensus 436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdL 509 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDL 509 (791)
T ss_pred hcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHH
Confidence 2 4555566666678887 456666666666777765 455666543 457888988755 4444433 46677
Q ss_pred HHHHccCC-HHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHhCCChhhHHHHHHc
Q 008585 447 IKLLEAKP-NSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSPSKKCKKLMISY 524 (560)
Q Consensus 447 v~ll~s~~-~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r~~i~~~ 524 (560)
...++..+ +..-..+.+.|++|....-.-..+++....+|.+-+.|.++ ..+......+-.+..++.+..+..-+..+
T Consensus 510 a~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a 589 (791)
T KOG1222|consen 510 AGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA 589 (791)
T ss_pred HHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence 77776544 44567788888888877777788999999999999999887 44456777788888999999999999999
Q ss_pred ChhHHHHHhhccCchhH
Q 008585 525 GAIGYLKKLSEMDIPGA 541 (560)
Q Consensus 525 g~i~~L~~L~~~~~~~a 541 (560)
|.++.|+.|++...++-
T Consensus 590 ~~i~tlieLL~a~QeDD 606 (791)
T KOG1222|consen 590 KLIDTLIELLQACQEDD 606 (791)
T ss_pred ccHHHHHHHHHhhcccc
Confidence 99999999998876653
No 26
>PRK09687 putative lyase; Provisional
Probab=99.47 E-value=8.4e-12 Score=122.35 Aligned_cols=253 Identities=18% Similarity=0.087 Sum_probs=195.0
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275 (560)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~ 275 (560)
-.++.|..+|.+++..+|..|+.+|..+.. ..+++.+.++++++++.+|..++++|..|...+....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~--- 89 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQD--- 89 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchH---
Confidence 358899999999999999999999988763 2367888899999999999999999999965432211
Q ss_pred hCCChHHHHHH-hccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH
Q 008585 276 GHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (560)
Q Consensus 276 ~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (560)
..++.|..+ ++++++.++..++.+|++++...... ...++..+...+.+++. .||..++.+|+++.. +.
T Consensus 90 --~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~-~VR~~a~~aLg~~~~--~~- 159 (280)
T PRK09687 90 --NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKST-NVRFAVAFALSVIND--EA- 159 (280)
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCH-HHHHHHHHHHhccCC--HH-
Confidence 233777766 67789999999999999996432111 12245667777777776 899999999987753 22
Q ss_pred HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChh
Q 008585 355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE 432 (560)
Q Consensus 355 ~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~ 432 (560)
.++.|+.++++ +.++..|+.+|+.+... . ...++.|+..|.+.+..|+..|+++|+++..
T Consensus 160 --------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-~------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--- 221 (280)
T PRK09687 160 --------AIPLLINLLKDPNGDVRNWAAFALNSNKYD-N------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD--- 221 (280)
T ss_pred --------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-C------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC---
Confidence 38889999976 67899999999998431 1 2368889999999999999999999999753
Q ss_pred HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHH
Q 008585 433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA 509 (560)
Q Consensus 433 ~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~ 509 (560)
..++|.|++.+.+++ ++..++.+|..+.. ...++.|.++++..++..++..+..+|.
T Consensus 222 -------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 -------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 256999999998765 67889999999842 1346889999986555567777776654
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.43 E-value=1.5e-11 Score=117.91 Aligned_cols=190 Identities=16% Similarity=0.199 Sum_probs=166.5
Q ss_pred hHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
.++.|+..|+ +.++..+..++.++.+.+. .+.++..+.+.|+++.+..+|+.+++.+++.|+.+|.+++.+.+++..+
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 4789999998 5679999999999999765 6778889999999999999999999999999999999999999887776
Q ss_pred HhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchh
Q 008585 234 VSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV 311 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~ 311 (560)
-. .++.+++...+. +..++..+.++|.+|+..++....+. +.++.++.++.+++..+|..++.+|.||+.++..
T Consensus 92 k~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 92 KM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 43 577777755544 77899999999999998887777664 4799999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
.+.+...+++..++.+++.....++...++..+.||..
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999987655889999999999965
No 28
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.43 E-value=1.2e-10 Score=118.85 Aligned_cols=317 Identities=15% Similarity=0.132 Sum_probs=232.9
Q ss_pred chHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhC-----CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 008585 154 GNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-----SNIAALVQLLTATSPRIREKTVTVICSLAESG 227 (560)
Q Consensus 154 ~~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~-----g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~ 227 (560)
.++..++..|. +...+.....+.-+.+++.+++.....+.+. +...+++.+|..++.-++..++.+|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 44666677775 4556778888888888998888766666653 55788888999989999999999999997654
Q ss_pred chH-HHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC--ChHHHHHHHHHHH
Q 008585 228 SCE-NWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DSVSQAAAACTLK 303 (560)
Q Consensus 228 ~~~-~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL~ 303 (560)
... ......-.++-+...+++. +...+..++.+|..|...++.+..+.+.++++.|+.+++.. +...+..++-++|
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 311 1000001233445555543 46678888999999999999999999999999999999863 4588899999999
Q ss_pred HhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC------hhHHHHHHhCCCHHHHHHhccC----
Q 008585 304 NISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN------ENLRRSVVSEGGIRSLLAYLDG---- 373 (560)
Q Consensus 304 nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~------~~~~~~i~~~g~l~~L~~ll~~---- 373 (560)
-|+.+++....+.+.+.++.++++++....+.+.+-++.+|.|+...+ ......+++.|.++ +++.|..
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~ 291 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYD 291 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCC
Confidence 999988877778788999999999998776689999999999999843 12334556666544 4454432
Q ss_pred -Ccc-------HHHHHHHHHHhhc----------------c---------ccHHHHHhCC--cHHHHHHHHh-cCCHHHH
Q 008585 374 -PLP-------QESAVGALRNLVG----------------S---------VSQEVLISLG--FFPRLVHVLK-AGSLGAQ 417 (560)
Q Consensus 374 -~~~-------~~~a~~~L~nla~----------------~---------~~~~~l~~~~--~i~~Lv~lL~-~~~~~v~ 417 (560)
+++ .+.--..+..++. + ++...+.+.+ .+..|+++|. +.++.+.
T Consensus 292 DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~l 371 (429)
T cd00256 292 DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIIL 371 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCccee
Confidence 221 1111111122221 1 1223334443 3788999995 5678888
Q ss_pred HHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 418 QAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 418 ~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
..||.=|+.++++ |..+..+.+.|+=..+++++.+++++||..|+.|+..|..+
T Consensus 372 aVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 372 AVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred ehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999965 88898888899999999999999999999999999988643
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.40 E-value=1e-10 Score=133.43 Aligned_cols=272 Identities=21% Similarity=0.155 Sum_probs=206.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
.+..|+..|+..++.+|..|+..|..+. ..+.++.|+.+|+++++.+|..|+.+|..+.....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------ 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------ 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------
Confidence 3567788888888899988888887753 23468889999999999999999999988854322
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHH
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~ 314 (560)
..+.+...|++.++.+|..++..|..+.. +-...++..|.++++.+|..|+.+|..+..
T Consensus 685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~------- 743 (897)
T PRK13800 685 ---PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDD------- 743 (897)
T ss_pred ---chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccC-------
Confidence 23577788888999999999999888742 123456788899999999999999987532
Q ss_pred HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhcccc
Q 008585 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVS 392 (560)
Q Consensus 315 i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~ 392 (560)
.+.+..++.+++. .+|..++.+|+.+..... ..++.|..++.+ +.++..|+.+|+++..+
T Consensus 744 ------~~~l~~~l~D~~~-~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-- 805 (897)
T PRK13800 744 ------VESVAGAATDENR-EVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCP-- 805 (897)
T ss_pred ------cHHHHHHhcCCCH-HHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--
Confidence 2446677888876 899999999998865322 126778888866 56888999999888642
Q ss_pred HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 008585 393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472 (560)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~ 472 (560)
...+..++..|.+.++.|+..|+.+|..+.. ...++.|+.++.+++..||..|+.+|..+. .+
T Consensus 806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~ 868 (897)
T PRK13800 806 ------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP-GD 868 (897)
T ss_pred ------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC-CC
Confidence 1134668888999999999999999998763 245689999999999999999999999872 12
Q ss_pred hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHH
Q 008585 473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA 509 (560)
Q Consensus 473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~ 509 (560)
+. ..+.|...+++. +..++..+..+|.
T Consensus 869 ~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~ 895 (897)
T PRK13800 869 PA---------ARDALTTALTDS-DADVRAYARRALA 895 (897)
T ss_pred HH---------HHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence 22 235666777765 3457878877764
No 30
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.7e-09 Score=114.19 Aligned_cols=376 Identities=17% Similarity=0.172 Sum_probs=266.4
Q ss_pred hHHHHHHHHccC-CHHHHHHHHHHHHHHHh-hChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC-chH
Q 008585 155 NTRELLARLQIG-HLEAKHKALDSLVEAMK-EDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESG-SCE 230 (560)
Q Consensus 155 ~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~-~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~-~~~ 230 (560)
-+..|+.-|+.. ++..+.+|+..|++.+. .+++....+--.-.+|.|+.+|++. +.+++..|+++|.+|+..- ...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 477888888765 78889999998888764 4555444333345699999999986 5999999999999999864 478
Q ss_pred HHHHhCCCHHHHHH-hhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC--
Q 008585 231 NWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-- 307 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-- 307 (560)
..+++.++||.|+. ++.-...++.+++..+|..|+... ..++.+.|++...+..+..-+..+|+.|+.+-.|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88899999999986 455578899999999999997643 3567899999999999998899999999999999985
Q ss_pred CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc---CChhHHHHHHhCCCHHHHHHhccC------CccHH
Q 008585 308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDG------PLPQE 378 (560)
Q Consensus 308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~---~~~~~~~~i~~~g~l~~L~~ll~~------~~~~~ 378 (560)
.++--..++| ++|.|..+|...+. ...++++-|+..++. +.+..-+.+...|.+....+++.- ..+..
T Consensus 326 ~sd~f~~v~e--alPlL~~lLs~~D~-k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 326 RSDEFHFVME--ALPLLTPLLSYQDK-KPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred CCccchHHHH--HHHHHHHHHhhccc-hhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 4455556665 79999999998887 789999999999886 455666778888988888888743 23456
Q ss_pred HHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCC--------------HHHHHHHH---------------------
Q 008585 379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS--------------LGAQQAAA--------------------- 421 (560)
Q Consensus 379 ~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~--------------~~v~~~A~--------------------- 421 (560)
..++.+..|+. +-....+...++...|..+|...+ |.-+....
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~ 482 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS 482 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence 67777777776 344555566666666666664311 10000000
Q ss_pred -------------------------------HHHHHHh-----------------------CChhHHHHHHhcCCHHHHH
Q 008585 422 -------------------------------SALCRVC-----------------------TSAEMKKLVGEAGCTPLLI 447 (560)
Q Consensus 422 -------------------------------~aL~~La-----------------------~~~~~~~~i~~~g~i~~Lv 447 (560)
+.+..+- ..++..+.++. ..+|.|+
T Consensus 483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv 561 (1051)
T KOG0168|consen 483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV 561 (1051)
T ss_pred hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence 1111000 00111222211 2577788
Q ss_pred HHHcc-CCHHHHHHHHHHHHHhc--CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-Ch-hhHHHHH
Q 008585 448 KLLEA-KPNSVREVAAQAISSLV--TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-SK-KCKKLMI 522 (560)
Q Consensus 448 ~ll~s-~~~~v~~~A~~aL~~L~--~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-~~-~~r~~i~ 522 (560)
+...+ .++.||..++.||..+. ...+-...++++...-..+-.+|.+.+...+. .++...--|.. -+ ..-..|.
T Consensus 562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlV-gALQvAEiLmeKlpd~F~~~F~ 640 (1051)
T KOG0168|consen 562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLV-GALQVAEILMEKLPDTFSPSFR 640 (1051)
T ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEe-ehHHHHHHHHHHhHHHhhhhHh
Confidence 87764 67889999999999998 34455677777655557777888877544322 33433333332 22 3556788
Q ss_pred HcChhHHHHHhhccC
Q 008585 523 SYGAIGYLKKLSEMD 537 (560)
Q Consensus 523 ~~g~i~~L~~L~~~~ 537 (560)
.+|.+.....|+.-.
T Consensus 641 REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 641 REGVFHAVKQLSVDS 655 (1051)
T ss_pred hhhHHHHHHHHhccC
Confidence 999999999998733
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.31 E-value=8.2e-10 Score=126.08 Aligned_cols=271 Identities=19% Similarity=0.147 Sum_probs=208.2
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHH
Q 008585 194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA 273 (560)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 273 (560)
+...++.|+..|+++++.+|..|+..|+.+.. .+.++.|++.|++++..+|..|+.+|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 33568899999999999999999999998752 3468999999999999999999999998853221
Q ss_pred HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~ 353 (560)
..+.|...|.++++.+|..++.+|..+... -...++..+.+++. .+|..|+.+|..+-.
T Consensus 685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~-~VR~~Av~aL~~~~~---- 743 (897)
T PRK13800 685 -----PAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDH-RVRIEAVRALVSVDD---- 743 (897)
T ss_pred -----chHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCH-HHHHHHHHHHhcccC----
Confidence 125677888899999999999999887531 23457778888886 899999999987621
Q ss_pred HHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCCh
Q 008585 354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA 431 (560)
Q Consensus 354 ~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~ 431 (560)
.+.|...+.+ +.+|..+..+|..+.... ...++.|..+++++++.|+..|+.+|+++...+
T Consensus 744 ----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 744 ----------VESVAGAATDENREVRIAVAKGLATLGAGG-------APAGDAVRALTGDPDPLVRAAALAALAELGCPP 806 (897)
T ss_pred ----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc-------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Confidence 2335566765 678999999999886421 123788999999999999999999999986541
Q ss_pred hHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHh
Q 008585 432 EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL 511 (560)
Q Consensus 432 ~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L 511 (560)
..++.++..+.+.++.+|..|+.+|..+. ....++.|+.+|++.+ ..++..++.+|..+
T Consensus 807 ---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~~L~D~~-~~VR~~A~~aL~~~ 865 (897)
T PRK13800 807 ---------DDVAAATAALRASAWQVRQGAARALAGAA-----------ADVAVPALVEALTDPH-LDVRKAAVLALTRW 865 (897)
T ss_pred ---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc-----------ccchHHHHHHHhcCCC-HHHHHHHHHHHhcc
Confidence 22466888899999999999999998773 1234588899998764 46899999999887
Q ss_pred CCChhhHHHHHHcChhHHHHHhhccCchhHHHHHH
Q 008585 512 SPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLE 546 (560)
Q Consensus 512 ~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~ 546 (560)
..++ ...+.|.+.++-+++++++.+.
T Consensus 866 ~~~~---------~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 866 PGDP---------AARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred CCCH---------HHHHHHHHHHhCCCHHHHHHHH
Confidence 4333 3456677777767776665544
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.30 E-value=7.4e-11 Score=100.73 Aligned_cols=117 Identities=27% Similarity=0.414 Sum_probs=107.7
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP- 309 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~- 309 (560)
.+++.|+++.++++|.++++.++..++++|.+++.+ ++....+.+.|+++.+++++.++++.++..++++|+|++.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467889999999999999999999999999999987 788888999999999999999999999999999999999865
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
+.+..+.+.|+++.+++++.+++. .+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~-~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNE-DIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCH-HHHHHHHHHHHHhhC
Confidence 677778889999999999998876 899999999999873
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.28 E-value=9.7e-11 Score=99.97 Aligned_cols=116 Identities=22% Similarity=0.352 Sum_probs=106.9
Q ss_pred HhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-h
Q 008585 192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-E 269 (560)
Q Consensus 192 i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~ 269 (560)
+++.|+++.++++|+++++.++..++.+|.+++.+ ++.+..+++.|+++.++++|.++++.++..++++|++|+.+. +
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999998 558888899999999999999999999999999999999875 5
Q ss_pred hHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 270 MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 270 ~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
....+...|+++.|++++.+.+..++..++++|+|++.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 56677889999999999999999999999999999863
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.24 E-value=2.3e-09 Score=110.81 Aligned_cols=358 Identities=15% Similarity=0.081 Sum_probs=223.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCc-hHHHH
Q 008585 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS-CENWL 233 (560)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~-~~~~l 233 (560)
..++.++...+++....|.....+++.+.+++...++..|.++.|+.++...+ ++.+...+.++..+...++ ....+
T Consensus 12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 35667778889999999999999998877777777889999999999998765 6666666667777765554 78888
Q ss_pred HhCCCHHHHHHhhhcCC-HHHHHHHHHHHHHhhCChhhHH---HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc
Q 008585 234 VSEGVLPPLIRLVESGS-TVGKEKATISLQRLSMSAEMAR---AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~---~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (560)
.+.+.++.++++|.+.+ ..+++...+++..+....+.+. .......++.+..+...+.......-+....+++..+
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence 89999999999999988 7899999999999965433221 2222233344433333222233333333333444444
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCc--------------------------------------------------hhHHHH
Q 008585 310 EVRQMLAEEGIVSVMIKLLDCGIL--------------------------------------------------LGSKEY 339 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~~~~--------------------------------------------------~~v~~~ 339 (560)
+.+..+.+.|+.+.+.-++..-+. ...+..
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 444444444433333333222111 023334
Q ss_pred HHHHHHHHccCChh----HHHH-HHhCC----------------C------------------------------HHHHH
Q 008585 340 AAECLQNLTASNEN----LRRS-VVSEG----------------G------------------------------IRSLL 368 (560)
Q Consensus 340 a~~~L~~La~~~~~----~~~~-i~~~g----------------~------------------------------l~~L~ 368 (560)
++.++.++...+.+ .+.. ..+.| + ++...
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 44444444332200 0000 00000 0 00000
Q ss_pred Hhcc---C---------------------------------------------------CccHHHHHHHHHHhhc--ccc
Q 008585 369 AYLD---G---------------------------------------------------PLPQESAVGALRNLVG--SVS 392 (560)
Q Consensus 369 ~ll~---~---------------------------------------------------~~~~~~a~~~L~nla~--~~~ 392 (560)
+++. + .+....++-++.++++ ..-
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0011122223333332 011
Q ss_pred HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
+..+....++.+|++++..++..++..+..+|+|+.- ....+..+...|+|+.+..++.+.++.+|..+.++|.++.-+
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 1112345679999999988999999999999999994 478899999999999999999999999999999999999966
Q ss_pred ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCC
Q 008585 472 PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (560)
Q Consensus 472 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~ 514 (560)
..+...+.-..+.-...+-.+-+.++..+++.++..+.||+-+
T Consensus 492 ~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 492 CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 6554444434455555554444444557999999999999865
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.21 E-value=9.1e-09 Score=111.68 Aligned_cols=322 Identities=18% Similarity=0.174 Sum_probs=228.9
Q ss_pred HHHHHccC--CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhC
Q 008585 159 LLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSE 236 (560)
Q Consensus 159 Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~ 236 (560)
+-..+... +...+.+++..|..+...+... . -+...+++++.+.+...+..+--++..+...++..-.+
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~-----~-~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l--- 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDI-----S-FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL--- 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT--------G-STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH---
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCC-----c-hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH---
Confidence 33344444 7778888888888876544422 1 56888889999889999999988888888776542222
Q ss_pred CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHH
Q 008585 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQML 315 (560)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i 315 (560)
++..+.+=|.++++.++..|.+++.++. +++....+ ++.+..++.+++|.+|..|+.++..+.. +++..
T Consensus 80 -~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~--- 149 (526)
T PF01602_consen 80 -IINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV--- 149 (526)
T ss_dssp -HHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---
T ss_pred -HHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---
Confidence 4677778888999999999999999987 45555555 3889999999999999999999999974 33321
Q ss_pred HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccH
Q 008585 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQ 393 (560)
Q Consensus 316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~ 393 (560)
... .++.+.+++.+.+. .++..|+.++..+ ..++.....+ -...+..|.+++.. |..+...++++..++.....
T Consensus 150 ~~~-~~~~l~~lL~d~~~-~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKDP-SVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp HGG-HHHHHHHHTTHSSH-HHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred HHH-HHHHHhhhccCCcc-hhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 122 58899999988886 8999999999999 3333221101 01123444444433 56788899999988872221
Q ss_pred HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh
Q 008585 394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ 473 (560)
Q Consensus 394 ~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~ 473 (560)
.. ....+++.+..++++.++.|...++.++..+...+... ..+++.|++++.++++++|..++..|..++...
T Consensus 226 ~~-~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~-----~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~- 298 (526)
T PF01602_consen 226 DA-DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELL-----QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN- 298 (526)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-
T ss_pred hh-hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHH-----HhhHHHHHHHhhcccchhehhHHHHHHHhhccc-
Confidence 11 01457899999999999999999999999998776522 345899999999999999999999999998554
Q ss_pred hhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585 474 NCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515 (560)
Q Consensus 474 ~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 515 (560)
...+. .....+..+...++..++..++.++..++...
T Consensus 299 --~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 299 --PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp --HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred --chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 22222 12333334443445568999999999998644
No 36
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.4e-07 Score=99.41 Aligned_cols=324 Identities=17% Similarity=0.176 Sum_probs=243.0
Q ss_pred hhchHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc
Q 008585 152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~ 228 (560)
....|+.|+.++.+.. .+.|+.|+..|..+++ +++.. +...|+++|++.|..+ |+++...++.++..+..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 3457999999997665 6889999999999976 34443 4557899999999764 69999999999999977552
Q ss_pred -------hH----------H-HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhhHHHHH-hCCChHHHHHHh
Q 008585 229 -------CE----------N-WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIV-GHGGVRPLIEIC 287 (560)
Q Consensus 229 -------~~----------~-~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~l~-~~g~i~~Lv~ll 287 (560)
.+ + .+...+.|..++..+...+..+|.++...+.++-.. .+.+..+. ..-+|..++.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 11 1 233567899999999999999999999999999554 44555444 578999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhcCC--c-hhHHHHHHHHHHHHccCChhHHHHHHhCCC
Q 008585 288 QTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGI--L-LGSKEYAAECLQNLTASNENLRRSVVSEGG 363 (560)
Q Consensus 288 ~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~~~--~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g~ 363 (560)
++....+|..+...|..|..+. .+++.++-++++..|+.+++... + .-|.+-|+..|-||-..+..++..+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 9999999999999999999754 56666666999999999998532 1 147889999999999999999888888899
Q ss_pred HHHHHHhccC----C-c-----c-----HHHHHHHHHHhhcc--------ccHHHHHhCCcHHHHHHHHhcC--CHHHHH
Q 008585 364 IRSLLAYLDG----P-L-----P-----QESAVGALRNLVGS--------VSQEVLISLGFFPRLVHVLKAG--SLGAQQ 418 (560)
Q Consensus 364 l~~L~~ll~~----~-~-----~-----~~~a~~~L~nla~~--------~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~ 418 (560)
++.|.++|.- . . . ...++.+++.+..+ .++..+.+.+++..|..++-+. ..+++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988742 1 1 1 23567777777762 2345778899999999988776 368999
Q ss_pred HHHHHHHHHhCC-hhHHHHHHhcC------CHHH----HHHHHcc-CCHHHHHHHHHHHHHhcC-CChhhHHHh
Q 008585 419 AAASALCRVCTS-AEMKKLVGEAG------CTPL----LIKLLEA-KPNSVREVAAQAISSLVT-LPQNCREVK 479 (560)
Q Consensus 419 ~A~~aL~~La~~-~~~~~~i~~~g------~i~~----Lv~ll~s-~~~~v~~~A~~aL~~L~~-~~~~~~~~~ 479 (560)
.+..++.++.++ ..++..+.+.. -.+. ++.+..+ .....|..+..++..+.. +....++++
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence 999999999966 55666665431 1222 2223333 455688888888777664 444455544
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.13 E-value=3.5e-09 Score=114.88 Aligned_cols=326 Identities=19% Similarity=0.203 Sum_probs=229.7
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchH-
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE- 230 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~- 230 (560)
....++.+...+.+.++.+|..|+.++..+...+|+.. ... .++.+.++|++.++.++..|+.++..+ ..++..
T Consensus 112 ~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~ 186 (526)
T PF01602_consen 112 AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSY 186 (526)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHH
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchh
Confidence 35557777788889999999999999999998777432 222 588899999888999999999999999 222211
Q ss_pred HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc
Q 008585 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (560)
..+ -...+..|.+++...++..+.....++..++.. +..... ...++.+..++++.++.+...++.++.++...+
T Consensus 187 ~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~ 262 (526)
T PF01602_consen 187 KSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP 262 (526)
T ss_dssp TTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH
T ss_pred hhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch
Confidence 011 112345555566778999999999999988764 333311 234588888888888999999999999988765
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc---CCccHHHHHHHHHH
Q 008585 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD---GPLPQESAVGALRN 386 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~---~~~~~~~a~~~L~n 386 (560)
. .-..+++.+..++.+.+. .++..++.+|..++..++ ..+ . .....+..+. ++.++..++..|..
T Consensus 263 ~-----~~~~~~~~L~~lL~s~~~-nvr~~~L~~L~~l~~~~~---~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~ 330 (526)
T PF01602_consen 263 E-----LLQKAINPLIKLLSSSDP-NVRYIALDSLSQLAQSNP---PAV-F--NQSLILFFLLYDDDPSIRKKALDLLYK 330 (526)
T ss_dssp H-----HHHHHHHHHHHHHTSSSH-HHHHHHHHHHHHHCCHCH---HHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHH
T ss_pred H-----HHHhhHHHHHHHhhcccc-hhehhHHHHHHHhhcccc---hhh-h--hhhhhhheecCCCChhHHHHHHHHHhh
Confidence 5 334578899999997775 799999999999998652 122 2 2222233333 35688999999999
Q ss_pred hhccccHHHHHhCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHH
Q 008585 387 LVGSVSQEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA 464 (560)
Q Consensus 387 la~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~a 464 (560)
++.+.+... +++.|...+. ..++.++..++..++.++.. +..... +++.+++++...+..+...+...
T Consensus 331 l~~~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~ 400 (526)
T PF01602_consen 331 LANESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDYVSNEIINV 400 (526)
T ss_dssp H--HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGGCHCHHHHH
T ss_pred cccccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhccccccchHHHH
Confidence 997544433 5888888884 45888999999999999843 333333 37788888887777778888888
Q ss_pred HHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585 465 ISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (560)
Q Consensus 465 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 513 (560)
+.++....++.+.. .+..++..+.+-..+..+..++.+++..+.
T Consensus 401 i~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 401 IRDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp HHHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred HHHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 88887544443332 257778887775555567777777776653
No 38
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.3e-07 Score=99.58 Aligned_cols=321 Identities=15% Similarity=0.161 Sum_probs=236.1
Q ss_pred CHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChh----
Q 008585 197 NIAALVQLLTATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAE---- 269 (560)
Q Consensus 197 ~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~---- 269 (560)
.|+.|+.-+.+.. .+-|..|+..|-.+++ .+|..+... +++++++.|+.+ +++...++..++..+..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 4666766665554 7889999999998876 366666555 589999999986 88899999999999976542
Q ss_pred ---hH----------HHHH-hCCChHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHh-cCcHHHHHHHhhcCC
Q 008585 270 ---MA----------RAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAE-EGIVSVMIKLLDCGI 332 (560)
Q Consensus 270 ---~~----------~~l~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e-~g~v~~L~~lL~~~~ 332 (560)
.. ..|. ..+.|..|+..+...|-.+|..+...|.++-. ..+.+..+.. .-+|..++.+|.+..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 11 2222 36788899999998899999999999999854 5588888776 778999999999988
Q ss_pred chhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHH
Q 008585 333 LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVG--SVSQEVLISLGFFPR 404 (560)
Q Consensus 333 ~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~ 404 (560)
. .+|..++-.|+.++.+++..++.+.=.++...|+.+++. .-+.+-|+..|-|+-. ..++..+.+.+.|++
T Consensus 180 E-~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 180 E-PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred h-hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 6 799999999999999999998888889999999999964 2468899999999998 477888889999999
Q ss_pred HHHHHhc---CCHH--------H--HHHHHHHHHHHhCC-------hhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHH
Q 008585 405 LVHVLKA---GSLG--------A--QQAAASALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAA 462 (560)
Q Consensus 405 Lv~lL~~---~~~~--------v--~~~A~~aL~~La~~-------~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~ 462 (560)
|.++|.. ++.+ | ...++.++..+... ..+++.+...+++..|+.++.+. ..+++..+.
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 9988853 2311 1 13455566666533 23567888999999999999765 466888898
Q ss_pred HHHHHhcCC-ChhhHHHhhh----CC-----ChHHHHhccCCCCchhhHHHHHHHHHHhCC-ChhhHHHH
Q 008585 463 QAISSLVTL-PQNCREVKRD----DK-----SVPNLVQLLDPSPQNTAKKYAVACLASLSP-SKKCKKLM 521 (560)
Q Consensus 463 ~aL~~L~~~-~~~~~~~~~~----~~-----~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-~~~~r~~i 521 (560)
.++++...+ ..|...|..- .. .+-.|+.+..+..+...+..+..++..... +.+.+..+
T Consensus 339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~ 408 (970)
T KOG0946|consen 339 ITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKF 408 (970)
T ss_pred HHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHH
Confidence 999988844 4454444331 11 122333444444333466666667665554 33444444
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.10 E-value=3.9e-08 Score=100.56 Aligned_cols=272 Identities=11% Similarity=0.085 Sum_probs=196.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
...++..|+.++.-....|+..|..++..++.+.......-..+.|...|+++ +...+..++.+|..|...+++|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566677888888899999999998865443211111111344566666654 47888899999999999999999999
Q ss_pred hCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCc--
Q 008585 235 SEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVP-- 309 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~-- 309 (560)
+.++++.|+.+|+.. +...+.+++-|++-|+.+++....+...+.++.|+++++. ....+.+.++.+|.|+...+
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 999999999999874 5678899999999999998887778789999999999986 56678899999999997632
Q ss_pred -----hhHHHHHhcCcHHHHHHHhhc--CCchhHHH-------HHHHHHHHHccC-------------------Chh---
Q 008585 310 -----EVRQMLAEEGIVSVMIKLLDC--GILLGSKE-------YAAECLQNLTAS-------------------NEN--- 353 (560)
Q Consensus 310 -----~~~~~i~e~g~v~~L~~lL~~--~~~~~v~~-------~a~~~L~~La~~-------------------~~~--- 353 (560)
.....+++.|..+.+-.+-.. .++ ++.+ .--..+..+++- ++.
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De-dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDE-DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 345566777776655444432 121 2221 111222233321 111
Q ss_pred -HHHHHHhCC--CHHHHHHhccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 008585 354 -LRRSVVSEG--GIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC 425 (560)
Q Consensus 354 -~~~~i~~~g--~l~~L~~ll~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (560)
+...+-+.+ .+..|+++++. +.+...|+.=|+.+++ |.++..+.+.|+=..++.+|.++|++|+.+|..++.
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 111222222 36778888842 6677888899999998 678888888899999999999999999999999998
Q ss_pred HHh
Q 008585 426 RVC 428 (560)
Q Consensus 426 ~La 428 (560)
.|-
T Consensus 422 klm 424 (429)
T cd00256 422 KLM 424 (429)
T ss_pred HHH
Confidence 763
No 40
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.09 E-value=3e-09 Score=106.92 Aligned_cols=212 Identities=20% Similarity=0.227 Sum_probs=158.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhh------CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG------RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~------~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
.++..+ +.+.+.....+..+.+++.+++.....+.. .....+++++++++|..++..|+.+|..+....+.+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 455555 567888889999999999888866555543 1257889999999999999999999999988776444
Q ss_pred HHHhCCCHHHHHHhhhcC----CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh-----cc--CChHHHHHHHH
Q 008585 232 WLVSEGVLPPLIRLVESG----STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-----QT--GDSVSQAAAAC 300 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll-----~~--~~~~~~~~a~~ 300 (560)
.-...+.++.+++.+++. +...+..++.+|.+|...++.+..+.+.++++.++.++ .+ .+..++..++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 433355678888888763 45567899999999999999999999999999999999 22 34577899999
Q ss_pred HHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh-HHHHHHhCCCHHHHHHh
Q 008585 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN-LRRSVVSEGGIRSLLAY 370 (560)
Q Consensus 301 aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~-~~~~i~~~g~l~~L~~l 370 (560)
++|.|+.+++....+...+.++.++++++....+.+.+-++.+|.|+...++. +...++..|+++.+-.+
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 99999999999999999999999999999877768999999999999986653 55566665554444333
No 41
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.08 E-value=5.8e-08 Score=95.91 Aligned_cols=317 Identities=17% Similarity=0.132 Sum_probs=229.6
Q ss_pred chHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChHHHHHHhh------CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 008585 154 GNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMG------RSNIAALVQLLTATSPRIREKTVTVICSLAES 226 (560)
Q Consensus 154 ~~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~~~~~~~i~~------~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~ 226 (560)
..+..++..+.. ..++.....+.-+-+++.++......+.. .-.-.+.+.+|...+.-+.+.+.++++.++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 446666777653 44566777777888888766644333321 22367788999999999999999999999887
Q ss_pred CchHHHHHhCC-CHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHH
Q 008585 227 GSCENWLVSEG-VLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTL 302 (560)
Q Consensus 227 ~~~~~~l~~~g-~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL 302 (560)
..++-...+-. ....|-..+++ .++.....+++||..+...++.+..++..+|+..++..+.+ .+-.++...+.++
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 65332211111 12334445555 57777888999999999999999999999999999999943 4668899999999
Q ss_pred HHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh------hHHHHHHhCCCHHHHHHhccC---
Q 008585 303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE------NLRRSVVSEGGIRSLLAYLDG--- 373 (560)
Q Consensus 303 ~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~------~~~~~i~~~g~l~~L~~ll~~--- 373 (560)
|-|+.++...+.+...+.++.+.+++++.....|.+-++.++.|+....+ .....++..+ ++.-++.|+.
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rky 303 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKY 303 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCC
Confidence 99999999998887789999999999987766899999999999998663 2223334444 4444444422
Q ss_pred --Ccc-------H---HHHHHHHHHh------------hc-c---------ccHHHHHhC--CcHHHHHHHHhcC-CHHH
Q 008585 374 --PLP-------Q---ESAVGALRNL------------VG-S---------VSQEVLISL--GFFPRLVHVLKAG-SLGA 416 (560)
Q Consensus 374 --~~~-------~---~~a~~~L~nl------------a~-~---------~~~~~l~~~--~~i~~Lv~lL~~~-~~~v 416 (560)
++. + .....-|..+ .. | ++...+.+. ..+..|+++|+.. +|.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 221 1 1222222222 11 1 122333333 3488899999875 5888
Q ss_pred HHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 417 QQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 417 ~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
-..|+.=|+...++ |+.+..+.+.|+=+.+++++.+++++||..|+.|+..|..+
T Consensus 384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 88999999999965 99999999999999999999999999999999999888643
No 42
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.4e-08 Score=92.74 Aligned_cols=335 Identities=15% Similarity=0.118 Sum_probs=232.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-----hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh
Q 008585 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGS-----CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM 270 (560)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 270 (560)
...+.|..-|.+++..++..++..++.+.++.+ ....+++.|.++.++..+..++.++...|...+.+++..++.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 355666667788888999999999999988765 234456889999999999999999999999999999999998
Q ss_pred HHHHHhCCChHHH--HHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585 271 ARAIVGHGGVRPL--IEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL 347 (560)
Q Consensus 271 ~~~l~~~g~i~~L--v~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L 347 (560)
...++.......+ ..+-...+.-.|......+..+.+ .++.......+|.+..+..-++...+.-++.++++....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 8888877666553 223233455677778888888865 6688888888999998888887644436889999999999
Q ss_pred ccCChhHHHHHHhCCCHHHHHHhccC--Cc--cHHHHHH----HHHHhhc-cccHHHHHhC--CcHHHHHHHHhcCCHHH
Q 008585 348 TASNENLRRSVVSEGGIRSLLAYLDG--PL--PQESAVG----ALRNLVG-SVSQEVLISL--GFFPRLVHVLKAGSLGA 416 (560)
Q Consensus 348 a~~~~~~~~~i~~~g~l~~L~~ll~~--~~--~~~~a~~----~L~nla~-~~~~~~l~~~--~~i~~Lv~lL~~~~~~v 416 (560)
+.. +.-++.+.+.|.++.+..++.. .+ -...++. ++++.+. ....+.+.+. -+++..+.++...|+..
T Consensus 242 aet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 242 AET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 985 3447888899999999999965 22 2232333 3333332 2233333222 34666677888899999
Q ss_pred HHHHHHHHHHHhCChhHHHHHHhcCC--HHHHHHHHcc-CCHHHHHHHHHHHHHhcC---CChhhHHH----------hh
Q 008585 417 QQAAASALCRVCTSAEMKKLVGEAGC--TPLLIKLLEA-KPNSVREVAAQAISSLVT---LPQNCREV----------KR 480 (560)
Q Consensus 417 ~~~A~~aL~~La~~~~~~~~i~~~g~--i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~---~~~~~~~~----------~~ 480 (560)
+..|..+++.|..+.+..+.+...|- ..+++.-... ....-++.+..+|.+++. -++++..- +.
T Consensus 321 ieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif 400 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF 400 (524)
T ss_pred HHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence 99999999999999998888877762 2333322222 223345777788888873 23332111 00
Q ss_pred h-----C--CChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH-HHHHcChhHHHHH
Q 008585 481 D-----D--KSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK-LMISYGAIGYLKK 532 (560)
Q Consensus 481 ~-----~--~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~-~i~~~g~i~~L~~ 532 (560)
+ . .-.......++. |.++.+..++..+..++..|=+.+ .+.+.|++++..+
T Consensus 401 daaaqstkldPleLFlgilqQ-pfpEihcAalktfTAiaaqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 401 DAAAQSTKLDPLELFLGILQQ-PFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHhhccCCChHHHHHHHHcC-CChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence 0 0 011112223332 456789999999999999995554 5557788877654
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.7e-08 Score=101.78 Aligned_cols=330 Identities=14% Similarity=0.104 Sum_probs=212.8
Q ss_pred hhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 008585 150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC 229 (560)
Q Consensus 150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~ 229 (560)
.+....++.++...+..++..|..|+..+..+.-........-++ ..++.+..+-...++++|.+.+.++..|.+....
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 346778999999999999999999999988877544433222222 3466677777778899999999999999875442
Q ss_pred HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh--CCChHHHHHH----------hcc-C------
Q 008585 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEI----------CQT-G------ 290 (560)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~--~g~i~~Lv~l----------l~~-~------ 290 (560)
|-.=-=.+++..+++.-++.+..+...||.....++..+..+..+.. ...+|.|+.- +++ .
T Consensus 249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 21111124677777777888899999999999999998865554432 2344444422 220 0
Q ss_pred ---------------------------------------ChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh--
Q 008585 291 ---------------------------------------DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD-- 329 (560)
Q Consensus 291 ---------------------------------------~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~-- 329 (560)
++.+|+..+.+|--|+ .+.....++.++.+++
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEH 401 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHH
Confidence 0345555555553333 2333445666666655
Q ss_pred --cCCchhHHHHHHHHHHHHccCChhHHHHHHhC--CCHHHHHHhccC--CccHHHHHHHHHHhhc---cccHHHHHhCC
Q 008585 330 --CGILLGSKEYAAECLQNLTASNENLRRSVVSE--GGIRSLLAYLDG--PLPQESAVGALRNLVG---SVSQEVLISLG 400 (560)
Q Consensus 330 --~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~--g~l~~L~~ll~~--~~~~~~a~~~L~nla~---~~~~~~l~~~~ 400 (560)
+.+. .+|+.+.-+|+.++. ++.+-++.. ..++.++++|++ +-+|...+|.|+..+. ...+.... ..
T Consensus 402 L~~~~W-~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~p 476 (885)
T KOG2023|consen 402 LSSEEW-KVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KP 476 (885)
T ss_pred cCcchh-hhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HH
Confidence 5555 799999999999985 333333332 257778888877 7789999999999987 22232221 12
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHc---cCCHHHHHHHHHHHHHhcCCChhh
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE---AKPNSVREVAAQAISSLVTLPQNC 475 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~---s~~~~v~~~A~~aL~~L~~~~~~~ 475 (560)
++..|++.+-.++..||+.|+.++..+-.. ++....+ .-.+..|+..+. .++--+-.-|.++|+.=+.+.-|.
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l--~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~ 554 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL--EYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK 554 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH--HHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc
Confidence 344455555568899999999999988643 2222222 112334444442 355556677888888877777776
Q ss_pred HHHhhhCCChHHHH---hccCCCC
Q 008585 476 REVKRDDKSVPNLV---QLLDPSP 496 (560)
Q Consensus 476 ~~~~~~~~~v~~Lv---~lL~~~~ 496 (560)
..+++ ..+++|+ .+|.+++
T Consensus 555 ~~Yiq--iLmPPLi~KW~~lsd~D 576 (885)
T KOG2023|consen 555 PAYIQ--ILMPPLIEKWELLSDSD 576 (885)
T ss_pred HHHHH--HhccHHHHHHHhcCccc
Confidence 66665 4557766 4555554
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=99.03 E-value=6.7e-07 Score=98.37 Aligned_cols=357 Identities=13% Similarity=0.117 Sum_probs=237.6
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
..+.++-..|++.+...+.+++..+......+.+.. ...+..++++.+++.+++...--.+.+.+...+....+
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL 105 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL 105 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH
Confidence 346677788888888889999988877764333211 24556777888999999999988888888754322111
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHH
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~ 313 (560)
++..+.+=+++.++.+|..|.++++++-. ++....+ ++.+.+.+.+.+|-+|+.|+.++.++-.... .
T Consensus 106 ----aINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--e 173 (746)
T PTZ00429 106 ----AVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVLEYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--Q 173 (746)
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--c
Confidence 47788888888999999999999999854 3333333 2677788889999999999999999865221 2
Q ss_pred HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccc
Q 008585 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSV 391 (560)
Q Consensus 314 ~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~ 391 (560)
.+.+.+.++.+.+++.+.+. .|..+|+.+|..+...++.. .-...+.+..++..+.+ +..|...+.+|.... +.
T Consensus 174 lv~~~~~~~~L~~LL~D~dp-~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~-P~ 249 (746)
T PTZ00429 174 LFYQQDFKKDLVELLNDNNP-VVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR-PS 249 (746)
T ss_pred cccccchHHHHHHHhcCCCc-cHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC-CC
Confidence 34456788899999988887 89999999999998755431 11223345666666653 566777777764432 22
Q ss_pred cHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 392 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.... ...++..+...|++.++.|...|+.++.++... ++..+.+.. ...++|+.++ +.++++|..++..+..+.
T Consensus 250 ~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 250 DKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred CcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 2221 135688888889999999999999999999854 333332211 2236677764 567889999998888876
Q ss_pred CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHH-hhccCchhHHHHHHHH
Q 008585 470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKK-LSEMDIPGARKLLERL 548 (560)
Q Consensus 470 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~-L~~~~~~~akkl~~~l 548 (560)
...+ .++.. .+....-..++ +..++...+.+|..|+....... ++ ..|.. ..+.+.+-+++.++.+
T Consensus 326 ~~~P---~lf~~--~~~~Ff~~~~D--p~yIK~~KLeIL~~Lane~Nv~~-IL-----~EL~eYa~d~D~ef~r~aIrAI 392 (746)
T PTZ00429 326 VIFP---NLLRT--NLDSFYVRYSD--PPFVKLEKLRLLLKLVTPSVAPE-IL-----KELAEYASGVDMVFVVEVVRAI 392 (746)
T ss_pred HHCH---HHHHH--HHHhhhcccCC--cHHHHHHHHHHHHHHcCcccHHH-HH-----HHHHHHhhcCCHHHHHHHHHHH
Confidence 5433 23322 12333333333 33578888999998885443322 22 22221 2244445556666655
Q ss_pred h
Q 008585 549 E 549 (560)
Q Consensus 549 ~ 549 (560)
+
T Consensus 393 g 393 (746)
T PTZ00429 393 A 393 (746)
T ss_pred H
Confidence 5
No 45
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.02 E-value=3.4e-07 Score=95.09 Aligned_cols=327 Identities=18% Similarity=0.119 Sum_probs=207.4
Q ss_pred hchHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCc-
Q 008585 153 HGNTRELLARLQI--GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGS- 228 (560)
Q Consensus 153 ~~~i~~Ll~~L~~--~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~- 228 (560)
...++.++..++. +..+.+.+....+..+..+.......+.+.+..+.|+++|..++ ..+++..++++..+-...+
T Consensus 50 ~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~ 129 (678)
T KOG1293|consen 50 LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY 129 (678)
T ss_pred hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc
Confidence 3456677777654 45677777888888888888888888889999999999999998 8899999999999987664
Q ss_pred --hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHH---
Q 008585 229 --CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK--- 303 (560)
Q Consensus 229 --~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~--- 303 (560)
..........+..+.-++.-........-+....+++..++.+.-+..+|..+.+.-++..-+...|..|...++
T Consensus 130 q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~ 209 (678)
T KOG1293|consen 130 QDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGD 209 (678)
T ss_pred cccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccc
Confidence 222223333444444444423333333444444455544555544555555444333332222222222222222
Q ss_pred ------------------------------------------------HhcC-C--------------------------
Q 008585 304 ------------------------------------------------NISA-V-------------------------- 308 (560)
Q Consensus 304 ------------------------------------------------nLa~-~-------------------------- 308 (560)
++.. +
T Consensus 210 ~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i 289 (678)
T KOG1293|consen 210 RILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCI 289 (678)
T ss_pred eeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhh
Confidence 2210 0
Q ss_pred -------------------------chhHHHHHhcCcHHHHHHHhhc---------------------------------
Q 008585 309 -------------------------PEVRQMLAEEGIVSVMIKLLDC--------------------------------- 330 (560)
Q Consensus 309 -------------------------~~~~~~i~e~g~v~~L~~lL~~--------------------------------- 330 (560)
+.+.....++...+...+++..
T Consensus 290 ~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~ 369 (678)
T KOG1293|consen 290 VLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISL 369 (678)
T ss_pred eeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhH
Confidence 0001111122222222222210
Q ss_pred -------------------CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc--cHHHHHHHHHHhhc
Q 008585 331 -------------------GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVG 389 (560)
Q Consensus 331 -------------------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~--~~~~a~~~L~nla~ 389 (560)
.+ ......++.++.+++..-...+.-.-...+.+++++++.+|+ ++..++++|.|+..
T Consensus 370 ~k~~l~~~t~~~l~~~~~~kd-~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 370 KKEILETTTESHLMCLPPIKD-HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHHHHHcccccccc-HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 01 134445555666655543333333333457889999997754 67889999999998
Q ss_pred --cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 008585 390 --SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465 (560)
Q Consensus 390 --~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL 465 (560)
.+.+..++..|+|+.+..++...++.++..+.|+|+++..+ ++.+......=....+..+...++..|++.+...|
T Consensus 449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999865 34444444444577788888999999999999999
Q ss_pred HHhcCCChhhHHHhh
Q 008585 466 SSLVTLPQNCREVKR 480 (560)
Q Consensus 466 ~~L~~~~~~~~~~~~ 480 (560)
.|+..+....-+++-
T Consensus 529 RNl~c~~~~svdfll 543 (678)
T KOG1293|consen 529 RNLTCNSRKSVDFLL 543 (678)
T ss_pred HHhhcCcHHHHHHHH
Confidence 999977655544443
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.99 E-value=1.8e-08 Score=101.21 Aligned_cols=222 Identities=17% Similarity=0.183 Sum_probs=155.1
Q ss_pred CHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCc-hHHHHHh------CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC
Q 008585 197 NIAALVQLLTA--TSPRIREKTVTVICSLAESGS-CENWLVS------EGVLPPLIRLVESGSTVGKEKATISLQRLSMS 267 (560)
Q Consensus 197 ~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~-~~~~l~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 267 (560)
.+..++.+|+. ++.++....+..+..+..+++ ..+.+.. .....++++++..++..++..++.+|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 36666677654 468999999999999988776 3433333 13688999999999999999999999999765
Q ss_pred hhhHHHHHhCCChHHHHHHhcc----CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh------hcCCchhHH
Q 008585 268 AEMARAIVGHGGVRPLIEICQT----GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL------DCGILLGSK 337 (560)
Q Consensus 268 ~~~~~~l~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL------~~~~~~~v~ 337 (560)
.+....-...+.++.++..+++ .+.+.+..++.+|.+|...++.|..+.+.++++.+..++ .++....++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 4433322224455777777765 345677899999999999999999999999999999999 344445889
Q ss_pred HHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc-cc--cHHHHHhCCcHHHHHHHHhc
Q 008585 338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SV--SQEVLISLGFFPRLVHVLKA 411 (560)
Q Consensus 338 ~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~-~~--~~~~l~~~~~i~~Lv~lL~~ 411 (560)
++++.|+|.|+.. +...+.+.+.+.++.|++++.. .++...++.+|.|+.. .. ....++..|+++.+-.+...
T Consensus 216 Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 216 YQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 9999999999996 5556778888899999999865 5678899999999998 33 66677777755555554443
Q ss_pred --CCHHHHHH
Q 008585 412 --GSLGAQQA 419 (560)
Q Consensus 412 --~~~~v~~~ 419 (560)
+|+++.+.
T Consensus 295 k~~Dedl~ed 304 (312)
T PF03224_consen 295 KWSDEDLTED 304 (312)
T ss_dssp --SSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 46666554
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.5e-08 Score=104.43 Aligned_cols=245 Identities=19% Similarity=0.174 Sum_probs=190.6
Q ss_pred ChHHHHHHHHHHHHhc--CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHH
Q 008585 291 DSVSQAAAACTLKNIS--AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL 368 (560)
Q Consensus 291 ~~~~~~~a~~aL~nLa--~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~ 368 (560)
|+..+..++.=|+.+- .+++.-..|--...+|.|+.+|++.+..++...||++|.+|+..-+.-...+++.++|+.|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 4444444444344332 24444444444568999999999988779999999999999986666667888999999999
Q ss_pred HhccC---CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCH
Q 008585 369 AYLDG---PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCT 443 (560)
Q Consensus 369 ~ll~~---~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i 443 (560)
.-|.. -++.++++.+|-.+++.. ...+.+.|.+...+.+|.--+..+|+.|..+..|+|.+ ++.-+.+. ..+
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~H-~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--eal 337 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRRH-PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EAL 337 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhc-cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHH
Confidence 88754 678899999999998732 35677899999999999988999999999999999966 44444443 459
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhc---CCChhhHHHhhhCCChHHHHhccCCCCc---hhhHHHHHHHHHHhCCC-hh
Q 008585 444 PLLIKLLEAKPNSVREVAAQAISSLV---TLPQNCREVKRDDKSVPNLVQLLDPSPQ---NTAKKYAVACLASLSPS-KK 516 (560)
Q Consensus 444 ~~Lv~ll~s~~~~v~~~A~~aL~~L~---~~~~~~~~~~~~~~~v~~Lv~lL~~~~~---~~~~~~a~~~L~~L~~~-~~ 516 (560)
|.|..++...+....+.++.+++.++ .+.++.-+.+...+.+....+||.-++. .......+..+..++.+ +.
T Consensus 338 PlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl 417 (1051)
T KOG0168|consen 338 PLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPL 417 (1051)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChH
Confidence 99999999988889999999999998 5667777777778889999999876632 22455566677777764 78
Q ss_pred hHHHHHHcChhHHHHHhhccCc
Q 008585 517 CKKLMISYGAIGYLKKLSEMDI 538 (560)
Q Consensus 517 ~r~~i~~~g~i~~L~~L~~~~~ 538 (560)
.+..+...|....|.++.....
T Consensus 418 ~~~tl~k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 418 LFRTLLKLDIADTLKRILQGYS 439 (1051)
T ss_pred HHHHHHHhhHHHHHHHHHhccC
Confidence 9999999999999998876654
No 48
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.97 E-value=3.4e-08 Score=98.10 Aligned_cols=259 Identities=20% Similarity=0.198 Sum_probs=188.5
Q ss_pred HHHHhCCChHHHHHHhccCChH--HHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 272 RAIVGHGGVRPLIEICQTGDSV--SQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~~~~~~--~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
..+...|++..|++++..++-+ ++..++..|-.+.. .+|+..++..| ...++.+.+...+.+.+...+.+|.++..
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 4566789999999999987654 47888988887754 37888888876 56666666655555889999999999999
Q ss_pred CChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc---cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 008585 350 SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL 424 (560)
Q Consensus 350 ~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL 424 (560)
++++..+.++..|+++.++.-... |.+..++.-+|+|++. ...+..+++...-++|..+-.+.|.-++..|+.++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 999999999999999998887754 7788999999999998 46778899999999999988888999999999999
Q ss_pred HHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHH
Q 008585 425 CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYA 504 (560)
Q Consensus 425 ~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a 504 (560)
+.++.+.+.-+.+...|.+...--++.+-++.-- +.+... -....-.+.+.+|+.+|+++--+ . .+
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd-~aQG~~~d~LqRLvPlLdS~R~E-A--q~ 397 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAHD-YAQGRGPDDLQRLVPLLDSNRLE-A--QC 397 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhhh-hhccCChHHHHHhhhhhhcchhh-h--hh
Confidence 9999998888888888866544444444444211 111111 00111124468899999976221 2 22
Q ss_pred HHHHH-----HhCCChhhHHHHHHcChhHHHHHhhccCchhHHHHHH
Q 008585 505 VACLA-----SLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLE 546 (560)
Q Consensus 505 ~~~L~-----~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~ 546 (560)
+.++. .+-+-..-.+.+.+-|+|+.|.+++.+.++-+.|++.
T Consensus 398 i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAs 444 (832)
T KOG3678|consen 398 IGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFAS 444 (832)
T ss_pred hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 33322 1211222346677889999999999988775544443
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=9.1e-08 Score=93.41 Aligned_cols=184 Identities=19% Similarity=0.233 Sum_probs=155.0
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHH
Q 008585 164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPL 242 (560)
Q Consensus 164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~L 242 (560)
++.+++.+..|+..|..++. +-+|...++..||..+++.++++++..+|+.|+++|+..+.+.+ ....+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 45678999999999999986 55678889999999999999999999999999999999999876 88999999999999
Q ss_pred HHhhhcC-CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcC-CchhHHHHHh
Q 008585 243 IRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISA-VPEVRQMLAE 317 (560)
Q Consensus 243 v~lL~~~-~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~-~~~~~~~i~e 317 (560)
+..+.++ +..++.+|..+++.+-.+ ++....|...+|...|..++.+ .+...++.++..+.++.. ....+..+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999876 556779999999999876 6778889999999999999998 567788999999999975 3344445555
Q ss_pred cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 318 ~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
.+....+..+....+. ++++.++.++..+..
T Consensus 252 ~~f~~~~~~l~~~l~~-~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDF-EVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccch-hhhHHHHHHHHHHHH
Confidence 7777777777777775 789998888776654
No 50
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.92 E-value=1.1e-07 Score=94.67 Aligned_cols=265 Identities=17% Similarity=0.198 Sum_probs=194.2
Q ss_pred HHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCC
Q 008585 191 AVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMS 267 (560)
Q Consensus 191 ~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~ 267 (560)
.+...|++..|++++.+++ ..++.+|.+.|-.+... ++++.++..| +..++.+-+. ..++.+...+.+|.+|-.+
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 4556789999999999987 45589999999887643 4677777776 5555555543 4677888899999999776
Q ss_pred -hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHH
Q 008585 268 -AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL 344 (560)
Q Consensus 268 -~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L 344 (560)
.+....+++.|++..++-.|+..+|.+.++++-+|.|++- ..+.++.|++..+-+-|+.+..+.++ -.+.+||-+.
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe-l~R~~AClAV 331 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE-LLRLHACLAV 331 (832)
T ss_pred hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH-HHHHHHHHHH
Confidence 6678899999999999999999999999999999999985 45889999999999999988877765 6899999999
Q ss_pred HHHccCChhHHHHHHhCCCH---HHHHHhccCCccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 008585 345 QNLTASNENLRRSVVSEGGI---RSLLAYLDGPLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQA 419 (560)
Q Consensus 345 ~~La~~~~~~~~~i~~~g~l---~~L~~ll~~~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~ 419 (560)
+.|+... +.-..+-++|.+ ++++..++.. .+++ ....+ =.-..-++.|+.+|++.-.+.|-.
T Consensus 332 ~vlat~K-E~E~~VrkS~TlaLVEPlva~~DP~-----------~FARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i 398 (832)
T KOG3678|consen 332 AVLATNK-EVEREVRKSGTLALVEPLVASLDPG-----------RFARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCI 398 (832)
T ss_pred hhhhhhh-hhhHHHhhccchhhhhhhhhccCcc-----------hhhhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhh
Confidence 9999854 444556667654 4444444431 1111 00000 001224788899998766666665
Q ss_pred HHHHHHHHhC--C-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 420 AASALCRVCT--S-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 420 A~~aL~~La~--~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
++.-++.=+. + ..--+.+.+-|.|+.|-++..+.+......|.++|..|...
T Consensus 399 ~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 399 GAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 5555544331 2 22345566779999999999988777778899999888643
No 51
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.2e-06 Score=96.68 Aligned_cols=345 Identities=19% Similarity=0.199 Sum_probs=224.3
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch--HHHHH
Q 008585 158 ELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC--ENWLV 234 (560)
Q Consensus 158 ~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~--~~~l~ 234 (560)
.++..++.. .+.++.+-++.+.++++..-.. -=.+.++.|.+..+++++..|+.|+.+|..+...-.+ ...+-
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~ 158 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD 158 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH
Confidence 445555544 4556777778888887643211 0014577788888899999999999999999875432 22211
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-hhHHHHHh-CCChHHHHHHh----ccCChHHHHHHHHHHHHhcCC
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVG-HGGVRPLIEIC----QTGDSVSQAAAACTLKNISAV 308 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~l~~-~g~i~~Lv~ll----~~~~~~~~~~a~~aL~nLa~~ 308 (560)
...+.+.+.+.+.+..+|..+++++..++..- +++...-. ...+|.++..+ ..++...-..+..+|..++..
T Consensus 159 --~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~ 236 (1075)
T KOG2171|consen 159 --DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES 236 (1075)
T ss_pred --HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh
Confidence 13445555666666669999999999886542 23222211 23345555544 456666677888888888753
Q ss_pred -chhHHHHHhcCcHHHHHHHhhcCC-chhHHHHHHHHHHHHccCChhHHHHHHh--CCCHHHHHHhccC-----------
Q 008585 309 -PEVRQMLAEEGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNENLRRSVVS--EGGIRSLLAYLDG----------- 373 (560)
Q Consensus 309 -~~~~~~i~e~g~v~~L~~lL~~~~-~~~v~~~a~~~L~~La~~~~~~~~~i~~--~g~l~~L~~ll~~----------- 373 (560)
+..-+...+ .++....++..+.+ +..+|..|+.+|..++...+...+.... ...++.++.++.+
T Consensus 237 ~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 237 EPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred chHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 333222222 35666666666532 2379999999999998864443332222 2245556665522
Q ss_pred -------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHH
Q 008585 374 -------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPL 445 (560)
Q Consensus 374 -------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~ 445 (560)
......|..+|-.++..-..+.+ -.-+++.+-.++++.+..-+..++.+|+.++.+ .+...... ...++.
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v-~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~ 393 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQV-LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPI 393 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhe-hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHH
Confidence 11455778888888773222211 123567777888999999999999999999955 33322221 356888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 446 LIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 446 Lv~ll~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
.+..+.++++.||..|+.++..++.+ .+...... .+...+.|+..+++.....+..++..++.+++
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 88889999999999999999999965 33333333 34566789999998866678888888888775
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1e-07 Score=92.99 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHH
Q 008585 249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKL 327 (560)
Q Consensus 249 ~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~l 327 (560)
.+.+-++.+..-|..+..+-+++..+...||+.+++..+.+.++.+|..|+++++..+. +|..+..+.|.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 37778888999999999999999999999999999999999999999999999999987 67999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhc--cccHHHHHhCCc
Q 008585 328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLISLGF 401 (560)
Q Consensus 328 L~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~--~~~~~~l~~~~~ 401 (560)
+.+.++..++..|+.+++.+..+++.....+...+|...|..++++ ...+..++..+..+.. ......+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 9977766889999999999999888888888999999999999976 3457889999999988 344455666788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585 402 FPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~La~~ 430 (560)
...+..+....+.++.+.+..++..+...
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 88888888888899999999888877644
No 53
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.7e-07 Score=96.99 Aligned_cols=324 Identities=20% Similarity=0.264 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHh----hCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHH
Q 008585 170 AKHKALDSLVEAMKEDEKNVLAVM----GRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR 244 (560)
Q Consensus 170 ~~~~A~~~L~~L~~~~~~~~~~i~----~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~ 244 (560)
-..-++.+|.++...+|+-...+- --|..+.+..+|.. .++.++..|+.++..+..+.++...++..|++..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 345678899999988885433221 23678888888875 4689999999999999999999999999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHH-hccCChHHHHHHHHHHHHhcCC----chhHHHHHh--
Q 008585 245 LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAV----PEVRQMLAE-- 317 (560)
Q Consensus 245 lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~----~~~~~~i~e-- 317 (560)
+|.+. +..|+.+..+|+.|+.+++..++-.++|++..+..+ |.+.++..|..++..|..+... |..+..++.
T Consensus 1821 lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1821 LLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred HHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 99875 567999999999999999999998999998888765 4567889999999999999643 222221111
Q ss_pred -c-------CcHHHHHHHhhcCC--c-----hhHHHHHHHHHHHHcc-------CC------------------------
Q 008585 318 -E-------GIVSVMIKLLDCGI--L-----LGSKEYAAECLQNLTA-------SN------------------------ 351 (560)
Q Consensus 318 -~-------g~v~~L~~lL~~~~--~-----~~v~~~a~~~L~~La~-------~~------------------------ 351 (560)
+ ..-+..++.++..+ + ...+......+..++. .+
T Consensus 1900 P~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVG 1979 (2235)
T KOG1789|consen 1900 PEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVG 1979 (2235)
T ss_pred hHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccc
Confidence 1 11144455554321 1 0122223333333332 00
Q ss_pred -hhHHHHHHhCC------------CHHHHHHhccCCc----cHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcC
Q 008585 352 -ENLRRSVVSEG------------GIRSLLAYLDGPL----PQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAG 412 (560)
Q Consensus 352 -~~~~~~i~~~g------------~l~~L~~ll~~~~----~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~ 412 (560)
..+|..+.+.+ .++.+++++..+. ..+.-..++..|.+ +...+.+-..|.+|.++..+...
T Consensus 1980 G~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~ 2059 (2235)
T KOG1789|consen 1980 GSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ 2059 (2235)
T ss_pred hhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc
Confidence 01222222221 1444444443311 12222333444444 44455666679999999999887
Q ss_pred CHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhc
Q 008585 413 SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQL 491 (560)
Q Consensus 413 ~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~l 491 (560)
+..+-..|.+.|..|+.+.-+.++|....++..++..++.. ...-.-|+++|..+... ........-..+.++.|+++
T Consensus 2060 n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~L 2138 (2235)
T KOG1789|consen 2060 NTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQL 2138 (2235)
T ss_pred CCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHH
Confidence 77777899999999999999999999988899999988744 45556899999999742 22222222346889999999
Q ss_pred cCCC
Q 008585 492 LDPS 495 (560)
Q Consensus 492 L~~~ 495 (560)
|+..
T Consensus 2139 Ld~~ 2142 (2235)
T KOG1789|consen 2139 LDSS 2142 (2235)
T ss_pred hccc
Confidence 9976
No 54
>PTZ00429 beta-adaptin; Provisional
Probab=98.87 E-value=1.4e-05 Score=88.04 Aligned_cols=290 Identities=12% Similarity=0.145 Sum_probs=194.4
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (560)
...+..+...+...++.+|..|+-++..+...+++ .+.+.|.++.|.++|.+.++.++..|+.+|..+....+.. .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l 214 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I 214 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h
Confidence 33456667778889999999999999999876663 3345678999999999999999999999999998665422 1
Q ss_pred HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC--ch
Q 008585 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--PE 310 (560)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~ 310 (560)
-...+.+..++..|.+.++..+.....+|.... ++.... ....+..+...+++.++.+...|+.++.++... ++
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 223345666777777778888888888876642 211111 123457788888889999999999999999864 23
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHHHHHhhc
Q 008585 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVG 389 (560)
Q Consensus 311 ~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~L~nla~ 389 (560)
...... ....+.++.++. +++ ++++.++..|..+....+. ++... +..+.-..++ ..++...+.+|..++.
T Consensus 291 ~~~~~~-~rl~~pLv~L~s-s~~-eiqyvaLr~I~~i~~~~P~----lf~~~-~~~Ff~~~~Dp~yIK~~KLeIL~~Lan 362 (746)
T PTZ00429 291 LIERCT-VRVNTALLTLSR-RDA-ETQYIVCKNIHALLVIFPN----LLRTN-LDSFYVRYSDPPFVKLEKLRLLLKLVT 362 (746)
T ss_pred HHHHHH-HHHHHHHHHhhC-CCc-cHHHHHHHHHHHHHHHCHH----HHHHH-HHhhhcccCCcHHHHHHHHHHHHHHcC
Confidence 222222 123355666654 444 7999999998888875543 22221 3333333344 4477888888888887
Q ss_pred cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (560)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L 468 (560)
+.+...+ +.-|..+..+.+.+.++.+..++++++.. +.... .++..|++++..+.. +...++.++.++
T Consensus 363 e~Nv~~I-----L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~I 431 (746)
T PTZ00429 363 PSVAPEI-----LKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDI 431 (746)
T ss_pred cccHHHH-----HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHH
Confidence 6555443 46677777777888888899999988843 33222 346666666654332 333455555555
Q ss_pred c
Q 008585 469 V 469 (560)
Q Consensus 469 ~ 469 (560)
.
T Consensus 432 l 432 (746)
T PTZ00429 432 V 432 (746)
T ss_pred H
Confidence 4
No 55
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=6.7e-08 Score=99.88 Aligned_cols=344 Identities=16% Similarity=0.133 Sum_probs=226.0
Q ss_pred hhhhHHhhhhhhhhhhchhhHHhhCCCCCCCcccccCCCCCchhhhh---hchHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 008585 106 QSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATT---HGNTRELLARLQIGHLEAKHKALDSLVEAM 182 (560)
Q Consensus 106 ~s~~~~~~~~l~~~~~d~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~---~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~ 182 (560)
+.+++-+.+..-..++|.+.++|.-+ .++... .++++.. ...++.|...|.+.+.....-|..+|..++
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tv-----GivITT---I~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIc 156 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATV-----GIVITT---IASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKIC 156 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhh-----hheeee---eecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence 44677777777788999888887322 011111 1112222 234777888888888888889999999999
Q ss_pred hhChHHHHHHh-hC---CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh-CCCHHHHHHhhhcCCHHHHHHH
Q 008585 183 KEDEKNVLAVM-GR---SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS-EGVLPPLIRLVESGSTVGKEKA 257 (560)
Q Consensus 183 ~~~~~~~~~i~-~~---g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~a 257 (560)
.++.+.-..-+ +. -.+|.++++.+++++.+|..|+.++..+.-.... ..+.. ...+..+..+-.+.++.+|...
T Consensus 157 EDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVRk~v 235 (885)
T KOG2023|consen 157 EDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVRKNV 235 (885)
T ss_pred hhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 87664322211 11 2488899999999999999999999887654431 11111 1256667777788899999999
Q ss_pred HHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHh-------
Q 008585 258 TISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLL------- 328 (560)
Q Consensus 258 ~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL------- 328 (560)
|.++..|......+-.-.=.++++.++..-++.+.++--.||.-...++..+-.+..+.. ...+|.|+.=+
T Consensus 236 C~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 236 CRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred HHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH
Confidence 999999976533333222356778888888888889999999999999988744444443 45666665433
Q ss_pred ---hcCCc---------------------------------------------hhHHHHHHHHHHHHccCChhHHHHHHh
Q 008585 329 ---DCGIL---------------------------------------------LGSKEYAAECLQNLTASNENLRRSVVS 360 (560)
Q Consensus 329 ---~~~~~---------------------------------------------~~v~~~a~~~L~~La~~~~~~~~~i~~ 360 (560)
++.++ -.+|..++.+|.-|+. ++.
T Consensus 316 ~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~ 387 (885)
T KOG2023|consen 316 ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFG 387 (885)
T ss_pred HHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH--------hhH
Confidence 10000 0345555555555543 122
Q ss_pred CCCHHHHHHhcc----C--CccHHHHHHHHHHhhccccHHHHH--hCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--
Q 008585 361 EGGIRSLLAYLD----G--PLPQESAVGALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-- 430 (560)
Q Consensus 361 ~g~l~~L~~ll~----~--~~~~~~a~~~L~nla~~~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-- 430 (560)
...++.++.+++ + -.+++.++-+++.++.. +.+-++ -...++.|+.+|.+..+-|+..++|+|++.+..
T Consensus 388 ~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~ 466 (885)
T KOG2023|consen 388 DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVV 466 (885)
T ss_pred HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHh
Confidence 223555555553 3 35789999999999861 000111 113588889999999999999999999999865
Q ss_pred hhHH-HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 431 AEMK-KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 431 ~~~~-~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.+.+ +.+ ..++..|++.+-.++..||+.|+.+++.+-
T Consensus 467 ~~~~~~~f--~pvL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 467 QDSRDEYF--KPVLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred cCChHhhh--HHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2223 333 233555555666788999999999999884
No 56
>PF05536 Neurochondrin: Neurochondrin
Probab=98.79 E-value=3.9e-06 Score=89.94 Aligned_cols=370 Identities=17% Similarity=0.165 Sum_probs=236.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChH---HHHHHhhCCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHh
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEK---NVLAVMGRSNIAALVQLLTAT-------SPRIREKTVTVICSLA 224 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~---~~~~i~~~g~v~~Lv~lL~~~-------~~~v~~~A~~~L~~La 224 (560)
.+.+.+..|+..+.+.|..++.-+.+++..++. .++.+.+.=|.+.|-++|+++ ....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 478889999999978888899999999886663 234577877789999999873 3677889999999999
Q ss_pred cCCch--HHHHHhCCCHHHHHHhhhcCCH-HHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHH
Q 008585 225 ESGSC--ENWLVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (560)
Q Consensus 225 ~~~~~--~~~l~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (560)
.+++. ...++. -||.|++++.+.+. .+...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+.....++.+
T Consensus 86 ~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 98763 344444 59999999988877 89999999999999999999999999999999999987 66778888888
Q ss_pred HHHhcCCchhH---HHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH-HHHHHhCCCHHH----HHHhcc
Q 008585 302 LKNISAVPEVR---QMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL-RRSVVSEGGIRS----LLAYLD 372 (560)
Q Consensus 302 L~nLa~~~~~~---~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~-~~~i~~~g~l~~----L~~ll~ 372 (560)
|.++....+.. ..-.. ...++.+...+...++ ..+...+..|..+-...+.. .+......-+.. +..++.
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~-~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHG-EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 88886532210 11111 2355666666666665 67888899999887755311 111122223333 333444
Q ss_pred C---CccHHHHHHHHHHhhccccHHHHH-hC-----CcHHHHHHHHh--------c----CC-H---H----------HH
Q 008585 373 G---PLPQESAVGALRNLVGSVSQEVLI-SL-----GFFPRLVHVLK--------A----GS-L---G----------AQ 417 (560)
Q Consensus 373 ~---~~~~~~a~~~L~nla~~~~~~~l~-~~-----~~i~~Lv~lL~--------~----~~-~---~----------v~ 417 (560)
+ +..|.+++....++....+.+-+. .. .|.-.++++.. . .+ + . +-
T Consensus 242 sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~il 321 (543)
T PF05536_consen 242 SRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSIL 321 (543)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHH
Confidence 4 445667777776666521111111 11 23333333221 1 11 1 1 11
Q ss_pred HHHHHHHHHHhCC------hhH----HHHHHhcCCHHHHHHHHcc------CCHHHHHHHHHHHHHhcCCChh-hHHHhh
Q 008585 418 QAAASALCRVCTS------AEM----KKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLVTLPQN-CREVKR 480 (560)
Q Consensus 418 ~~A~~aL~~La~~------~~~----~~~i~~~g~i~~Lv~ll~s------~~~~v~~~A~~aL~~L~~~~~~-~~~~~~ 480 (560)
+.....+.+-... ++. ++.+ .+.+...+++++. +++..-..+.++|+.-....++ .++.+.
T Consensus 322 E~~I~~l~~~~~~~~~~~~~~~l~kl~~~l--~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v~ 399 (543)
T PF05536_consen 322 EHFIGYLVRSLEEESLDLDPDTLLKLRTSL--SETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEVY 399 (543)
T ss_pred HHHHHHHHhccccccCCCCHHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 2222222221111 111 2222 2345556666642 2222444566666655544443 344443
Q ss_pred hCCChHHHHhccCCCCc---------hhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHH
Q 008585 481 DDKSVPNLVQLLDPSPQ---------NTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKK 532 (560)
Q Consensus 481 ~~~~v~~Lv~lL~~~~~---------~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~ 532 (560)
+.++.++.+...+.. -....+.+-+|..++..++.|+.+...|+.+.|.+
T Consensus 400 --~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~ 458 (543)
T PF05536_consen 400 --GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCD 458 (543)
T ss_pred --HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHH
Confidence 677888888876622 23566888888999999999999999999776653
No 57
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.72 E-value=4.6e-06 Score=82.76 Aligned_cols=270 Identities=13% Similarity=0.080 Sum_probs=192.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCC----HHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCch
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSN----IAALVQLLTA-TSPRIREKTVTVICSLAESGSC 229 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~----v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~ 229 (560)
.....+..|..++.-........+..++...... ++.+. ...|-..+++ .+++....++++|..+...+++
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ey 190 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEY 190 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcch
Confidence 3556677888888777776777777776544322 11111 2334445555 5688888999999999999999
Q ss_pred HHHHHhCCCHHHHHHhhhc--CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhc
Q 008585 230 ENWLVSEGVLPPLIRLVES--GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNIS 306 (560)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa 306 (560)
|..++.++++..++..+.+ .+..++.+.+-|++-|+.++..++.+...+.++.|.++++. ....+-+-++.++.|+.
T Consensus 191 R~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 191 RYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred hheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999843 37889999999999999999999888889999999999986 45677889999999998
Q ss_pred CCc-------hhHHHHHhcCcHHHHHHHhhcC-CchhHHHH-------HHHHHHHHccCChh------------------
Q 008585 307 AVP-------EVRQMLAEEGIVSVMIKLLDCG-ILLGSKEY-------AAECLQNLTASNEN------------------ 353 (560)
Q Consensus 307 ~~~-------~~~~~i~e~g~v~~L~~lL~~~-~~~~v~~~-------a~~~L~~La~~~~~------------------ 353 (560)
... +.+..++..++.+.+-.+-+.. ++.++... --.-...|++.++.
T Consensus 271 ~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e 350 (442)
T KOG2759|consen 271 DKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSE 350 (442)
T ss_pred ccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccccc
Confidence 643 3445566666666554444321 11122221 11222223321111
Q ss_pred -----HHHHHHhC--CCHHHHHHhccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 008585 354 -----LRRSVVSE--GGIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA 421 (560)
Q Consensus 354 -----~~~~i~~~--g~l~~L~~ll~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~ 421 (560)
+...+-+. ..+..|+++|+. |.+...|+.=|+.+.+ |+++..+...|+=+.++++|+++|++|+..|.
T Consensus 351 ~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~AL 430 (442)
T KOG2759|consen 351 KFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHAL 430 (442)
T ss_pred chHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHH
Confidence 11111111 137778888864 6667788888899888 78888889999999999999999999999999
Q ss_pred HHHHHHh
Q 008585 422 SALCRVC 428 (560)
Q Consensus 422 ~aL~~La 428 (560)
.|+..+-
T Consensus 431 lavQ~lm 437 (442)
T KOG2759|consen 431 LAVQKLM 437 (442)
T ss_pred HHHHHHH
Confidence 9988764
No 58
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.5e-05 Score=76.37 Aligned_cols=334 Identities=15% Similarity=0.172 Sum_probs=233.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHH----HHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNV----LAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~----~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
.+.|-.-|...+..++.-++..+..+..+.+-|. ..+++.|..+.++..+-.++.++-..|...+..++..+..-.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 3444444556677889999999999988776432 345578899999999999999999999999999999998777
Q ss_pred HHHhCCCHHHH--HHhhhcCCHHHHHHHHHHHHHhh-CChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcC
Q 008585 232 WLVSEGVLPPL--IRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISA 307 (560)
Q Consensus 232 ~l~~~g~i~~L--v~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~ 307 (560)
.+..++..+.+ .++-...+.-.|..+...+-.+. .+++.....-..|.+..|..=++. +|.-++..+......|+.
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 88877766554 34444556677888888888884 467777777788888888777765 677788899999999998
Q ss_pred CchhHHHHHhcCcHHHHHHHhhcCCc-hhHHHHHHHHHHHHccCChhH----HHHHHhC--CCHHHHHHhc--cCCccHH
Q 008585 308 VPEVRQMLAEEGIVSVMIKLLDCGIL-LGSKEYAAECLQNLTASNENL----RRSVVSE--GGIRSLLAYL--DGPLPQE 378 (560)
Q Consensus 308 ~~~~~~~i~e~g~v~~L~~lL~~~~~-~~v~~~a~~~L~~La~~~~~~----~~~i~~~--g~l~~L~~ll--~~~~~~~ 378 (560)
.+..++.+..+|.+..+..++...+. ..-+..+++..+.+... +.. -+.+.+. -.++..++++ ++|+.++
T Consensus 244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-eaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 88889999999999999999864332 13344455554444331 111 0112111 1233444454 3488899
Q ss_pred HHHHHHHHhhc-cccHHHHHhCCc--HHHHHHHHhc-CCHHHHHHHHHHHHHHhCC----h----h------HHHHHHhc
Q 008585 379 SAVGALRNLVG-SVSQEVLISLGF--FPRLVHVLKA-GSLGAQQAAASALCRVCTS----A----E------MKKLVGEA 440 (560)
Q Consensus 379 ~a~~~L~nla~-~~~~~~l~~~~~--i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~----~----~------~~~~i~~~ 440 (560)
.|+.+++-+.. .+..+.+.+.|- ..+++.-..+ ....-|..+..+|.+++.. + + .+-.+.+.
T Consensus 323 aAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifda 402 (524)
T KOG4413|consen 323 AAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDA 402 (524)
T ss_pred HHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHH
Confidence 99999999998 567777776664 3444433333 3355677788888888753 1 1 11122211
Q ss_pred -------CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHh
Q 008585 441 -------GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ 490 (560)
Q Consensus 441 -------g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~ 490 (560)
.-...+...++.+.++++..+...+..++..+-..+.++...+.++....
T Consensus 403 aaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 403 AAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence 23445666677788999999999999999999988888877666665443
No 59
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1e-05 Score=77.09 Aligned_cols=292 Identities=19% Similarity=0.222 Sum_probs=194.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHh--hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
...++..+++.++.++..|...+..+... . . +.+. +...++.+.++++..++ -+.|+.+|.+++.+...++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~-~-~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-G-L-QSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-c-h-hhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 45778889999999999999999998765 1 1 1221 22457888899988766 778999999999999988888
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh-------CCChHHHHHHhccCCh--HHHHHHHHHHHH
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG-------HGGVRPLIEICQTGDS--VSQAAAACTLKN 304 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~-------~g~i~~Lv~ll~~~~~--~~~~~a~~aL~n 304 (560)
.+. .+..++..+.+.........+..|.||+.+++....+.. .|.++....++..+.. .--...+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 877 777788888777667788899999999998776554332 3445555555554322 223567889999
Q ss_pred hcCCchhHHHHHhcCcHHH--HHHHhhcCCchhH-HHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHH
Q 008585 305 ISAVPEVRQMLAEEGIVSV--MIKLLDCGILLGS-KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAV 381 (560)
Q Consensus 305 La~~~~~~~~i~e~g~v~~--L~~lL~~~~~~~v-~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~ 381 (560)
++..+..|..+.+...++. +..+ .+.+. .+ +...+++|.|.|..... ...+.. ..+..+..+|
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~f-t~~~s-~vRr~GvagtlkN~cFd~~~-h~~lL~-e~~~lLp~iL---------- 224 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPF-TSEDS-QVRRGGVAGTLKNCCFDAKL-HEVLLD-ESINLLPAIL---------- 224 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcc-cccch-hhhccchHHHHHhhhccchh-HHHHhc-chHHHHHHHH----------
Confidence 9999999999998663332 2222 23232 34 45578999999986554 334443 2222222222
Q ss_pred HHHHHhhccc--cHHHHHhCCcHHHHHHHHh-----cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc-cC
Q 008585 382 GALRNLVGSV--SQEVLISLGFFPRLVHVLK-----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AK 453 (560)
Q Consensus 382 ~~L~nla~~~--~~~~l~~~~~i~~Lv~lL~-----~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~-s~ 453 (560)
.-++.++ .-+.+ .+....| ++|. ..++.++..-..+|.-||.....|+.+...|+-+.+-.+-+ .+
T Consensus 225 ---lPlagpee~sEEdm--~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ 298 (353)
T KOG2973|consen 225 ---LPLAGPEELSEEDM--AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEE 298 (353)
T ss_pred ---hhcCCccccCHHHH--hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCC
Confidence 2222211 01111 1222333 6664 35799999999999999999999999999886665554443 35
Q ss_pred CHHHHHHHHHHHHHhcCCCh
Q 008585 454 PNSVREVAAQAISSLVTLPQ 473 (560)
Q Consensus 454 ~~~v~~~A~~aL~~L~~~~~ 473 (560)
++++++.+-.....+....+
T Consensus 299 ded~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 299 DEDIREACEQVVQMLVRLEP 318 (353)
T ss_pred cHHHHHHHHHHHHHHHhccc
Confidence 67777776666666654433
No 60
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=5.1e-06 Score=87.73 Aligned_cols=307 Identities=16% Similarity=0.148 Sum_probs=197.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHH-HHHh
Q 008585 200 ALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMAR-AIVG 276 (560)
Q Consensus 200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~-~l~~ 276 (560)
.+=+-+++++..-++.|+.+++.+-..++ .+..-+..+++|.+++++.+.+..++..++|++.+++.. ++... ...-
T Consensus 368 Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l 447 (859)
T KOG1241|consen 368 FIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELL 447 (859)
T ss_pred HHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence 33335667889999999999999988775 444444556899999999988889999999999999875 43321 2222
Q ss_pred CCChHHHHHHhccCChHHHHHHHHHHHHhcC--Cc---hh-HHHHHh---cCcHHHHHHHhh--cCCchhHHHHHHHHHH
Q 008585 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISA--VP---EV-RQMLAE---EGIVSVMIKLLD--CGILLGSKEYAAECLQ 345 (560)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~---~~-~~~i~e---~g~v~~L~~lL~--~~~~~~v~~~a~~~L~ 345 (560)
...++.++.-+.+ .|.+-.+++|++.+|+. .+ ++ .....+ ..++..|++.-+ +++....|..+..+|+
T Consensus 448 ~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALm 526 (859)
T KOG1241|consen 448 QSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALM 526 (859)
T ss_pred hHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 3445555555554 78999999999999973 11 11 111111 112333333322 2333368899999999
Q ss_pred HHccCChhHHHHHHhCC---CHHHHHHhccC-----------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHH
Q 008585 346 NLTASNENLRRSVVSEG---GIRSLLAYLDG-----------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVL 409 (560)
Q Consensus 346 ~La~~~~~~~~~i~~~g---~l~~L~~ll~~-----------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL 409 (560)
.+....+.-.-.++..- .+..|-+.+++ .+++..-+.+|.++.+ ...... .....+..+++++
T Consensus 527 ElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~-~~d~iM~lflri~ 605 (859)
T KOG1241|consen 527 ELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE-VSDQIMGLFLRIF 605 (859)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHHHHHHH
Confidence 99886553222222110 11112222221 2345566677777666 221111 2345688888999
Q ss_pred hc-CCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCC
Q 008585 410 KA-GSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVTL-PQNCREVKRDDKS 484 (560)
Q Consensus 410 ~~-~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~ 484 (560)
++ ++..+++.|..+++.++.+ +.+.+++ ..+.|.|..-|+. .+-.+...|......|+.. ..+...+- +..
T Consensus 606 ~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~--d~~ 681 (859)
T KOG1241|consen 606 ESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC--DEL 681 (859)
T ss_pred cCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHH
Confidence 88 5678899999999998865 5666666 5568888888854 4455788889999999843 33333332 356
Q ss_pred hHHHHhccCCC-CchhhHHHHHHHHHHhC
Q 008585 485 VPNLVQLLDPS-PQNTAKKYAVACLASLS 512 (560)
Q Consensus 485 v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~ 512 (560)
+..|++.|.++ -+..+|-..++++..++
T Consensus 682 mt~Lvq~Lss~~~hR~vKP~IlS~FgDIA 710 (859)
T KOG1241|consen 682 MTVLVQCLSSPNLHRNVKPAILSVFGDIA 710 (859)
T ss_pred HHHHHHHccCccccccccchHHHHHHHHH
Confidence 68899999987 34457778888887665
No 61
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.6e-05 Score=74.42 Aligned_cols=288 Identities=18% Similarity=0.219 Sum_probs=191.9
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhc
Q 008585 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE 318 (560)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~ 318 (560)
...++.++.+.++.++..|..-+..++...-..+.-.+.-.++.+.+++...++ -..|+.+|.|++..++.++.+...
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 345788999999999999999998887661111111234556788888887666 667889999999999999999887
Q ss_pred CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHh-C----CCHHHHHHhc-cC----CccHHHHHHHHHHhh
Q 008585 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS-E----GGIRSLLAYL-DG----PLPQESAVGALRNLV 388 (560)
Q Consensus 319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~-~----g~l~~L~~ll-~~----~~~~~~a~~~L~nla 388 (560)
.+..++..+-++.. ..-...++.|.|++...+........ . .++..++..+ +. ...-.....++.|++
T Consensus 83 -~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred -HHHHHHHHhcCccc-chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 88888888887765 68889999999999987776554443 2 3455555544 32 123456677888888
Q ss_pred c-cccHHHHHhCC-cHHHHHHHHhcCCHHH-HHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 008585 389 G-SVSQEVLISLG-FFPRLVHVLKAGSLGA-QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465 (560)
Q Consensus 389 ~-~~~~~~l~~~~-~i~~Lv~lL~~~~~~v-~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL 465 (560)
. ..++.-+.... +....+.-+.+.+..+ +...+.+|.|.|.+..++..+.+ ..+..|..+|.
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLl-------------- 225 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILL-------------- 225 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHh--------------
Confidence 7 55666555443 2222222333444444 45677889999988777776665 33444444432
Q ss_pred HHhcCCChhhHHHhhhCCChHHHHhccCCC----CchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhcc-Cchh
Q 008585 466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPS----PQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEM-DIPG 540 (560)
Q Consensus 466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~----~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~-~~~~ 540 (560)
-|+....-..+-+ ..++.=+|+|... +++.+++..+.++.-||....+|..+.+.|+.+.+..+=+- ++++
T Consensus 226 -Plagpee~sEEdm---~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 226 -PLAGPEELSEEDM---AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDED 301 (353)
T ss_pred -hcCCccccCHHHH---hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHH
Confidence 2222111111111 1233333777632 44568999999999999999999999999999998877543 3566
Q ss_pred HHHHHHHHh
Q 008585 541 ARKLLERLE 549 (560)
Q Consensus 541 akkl~~~l~ 549 (560)
..++-+++.
T Consensus 302 ~~~ace~vv 310 (353)
T KOG2973|consen 302 IREACEQVV 310 (353)
T ss_pred HHHHHHHHH
Confidence 666555543
No 62
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=7.5e-05 Score=77.92 Aligned_cols=317 Identities=17% Similarity=0.144 Sum_probs=201.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHH-HHHHHH----HHHHHhcCCch
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRI-REKTVT----VICSLAESGSC 229 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v-~~~A~~----~L~~La~~~~~ 229 (560)
..+.+...+.+.+...+..+...+..+..+... ..+.+.+.+..|...+....... ++.+.- ...+|+...+
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~E- 211 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFE- 211 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCC-
Confidence 345566666777788888888888888765432 23445677888888887654333 322222 2222221111
Q ss_pred HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
..++. .+|.++.-..+....+|..+..+...+-. ++.....+ ++.++.-+.+..+..+..++..|+.++.
T Consensus 212 -Pyiv~--~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~l-----lpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 212 -PYIVP--ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLL-----LPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred -chHHh--hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHh-----hhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11111 35555555666788889888887777633 22222222 2555555545588899999999999987
Q ss_pred CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc--CChhHHHHHHhCCCHHHHHHhccCCc-cHHHHHHHH
Q 008585 308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA--SNENLRRSVVSEGGIRSLLAYLDGPL-PQESAVGAL 384 (560)
Q Consensus 308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~--~~~~~~~~i~~~g~l~~L~~ll~~~~-~~~~a~~~L 384 (560)
....+-......++|.+.+.+.+.++ ++++.+..+|..++. .|+... ..++.|++.+.+|. ....++..|
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~-evr~a~~~~l~~~~svidN~dI~------~~ip~Lld~l~dp~~~~~e~~~~L 356 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKP-EVRKAGIETLLKFGSVIDNPDIQ------KIIPTLLDALADPSCYTPECLDSL 356 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCH-HHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhcCcccchHHHHHhh
Confidence 66666667778899999999999997 899999999999987 333322 12677888888876 566666666
Q ss_pred HHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHh--cCCHHHHHHHHccCCHHHHHHH
Q 008585 385 RNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGE--AGCTPLLIKLLEAKPNSVREVA 461 (560)
Q Consensus 385 ~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~Lv~ll~s~~~~v~~~A 461 (560)
+.=.. ..... -.-.-.++.|-+-+...+...++.++.++.|++.-.+..+.+.. -..+|.|-..+....+++|..+
T Consensus 357 ~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~va 435 (569)
T KOG1242|consen 357 GATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVA 435 (569)
T ss_pred cceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHH
Confidence 65554 11100 00111355555666777888999999999999965322222211 1345666666666789999999
Q ss_pred HHHHHHhcCCChhhHHHhhhCCChHHHHhccCC
Q 008585 462 AQAISSLVTLPQNCREVKRDDKSVPNLVQLLDP 494 (560)
Q Consensus 462 ~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~ 494 (560)
..+|+.+.....+... .+.++.+...+.+
T Consensus 436 arAL~~l~e~~g~~~f----~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 436 ARALGALLERLGEVSF----DDLIPELSETLTS 464 (569)
T ss_pred HHHHHHHHHHHHhhcc----cccccHHHHhhcc
Confidence 9999988644333222 3445666666543
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.39 E-value=0.00013 Score=75.35 Aligned_cols=243 Identities=16% Similarity=0.090 Sum_probs=167.2
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 156 TRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 156 i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
++.++..|. ..+.++...++..+.. .+++ ..+..|+..|.+.++.++..++.+|+.+..
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~--~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------- 115 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLA--QEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------- 115 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhc--cCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc---------
Confidence 556666663 4445554443333321 1111 138899999999999999999999986543
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHH
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~ 314 (560)
.+..+.|+.+|++.++.++..+..++.... ....+.+..++++.++.++..|+.+|+.+-.
T Consensus 116 -~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------- 176 (410)
T TIGR02270 116 -RQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPR------- 176 (410)
T ss_pred -hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence 346788999999999999988887776622 2234678899999999999999999988764
Q ss_pred HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc-CCccHHHHHHHHHHhhccccH
Q 008585 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-GPLPQESAVGALRNLVGSVSQ 393 (560)
Q Consensus 315 i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~~~a~~~L~nla~~~~~ 393 (560)
...++.|...+.+.++ .|+..|+..+..+-. +.. +..+..+.. ....+...+.++..+..
T Consensus 177 ---~~a~~~L~~al~d~~~-~VR~aA~~al~~lG~--~~A---------~~~l~~~~~~~g~~~~~~l~~~lal~~---- 237 (410)
T TIGR02270 177 ---RLSESTLRLYLRDSDP-EVRFAALEAGLLAGS--RLA---------WGVCRRFQVLEGGPHRQRLLVLLAVAG---- 237 (410)
T ss_pred ---ccchHHHHHHHcCCCH-HHHHHHHHHHHHcCC--HhH---------HHHHHHHHhccCccHHHHHHHHHHhCC----
Confidence 2466777777888886 899999999987743 221 334444222 22223333333322221
Q ss_pred HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh
Q 008585 394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ 473 (560)
Q Consensus 394 ~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~ 473 (560)
....++.|..+++... ++..++.+++.+... ..++.|++.+... .++..|.+++..|+.-+-
T Consensus 238 ----~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~l 299 (410)
T TIGR02270 238 ----GPDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAMREP--PWARLAGEAFSLITGMDV 299 (410)
T ss_pred ----chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHhcCc--HHHHHHHHHHHHhhCCCc
Confidence 1246888888887654 999999999988753 5788899888643 399999999999986443
Q ss_pred h
Q 008585 474 N 474 (560)
Q Consensus 474 ~ 474 (560)
.
T Consensus 300 ~ 300 (410)
T TIGR02270 300 A 300 (410)
T ss_pred c
Confidence 3
No 64
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.36 E-value=0.00016 Score=73.89 Aligned_cols=290 Identities=19% Similarity=0.178 Sum_probs=197.3
Q ss_pred HHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC--CHH
Q 008585 175 LDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STV 252 (560)
Q Consensus 175 ~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~ 252 (560)
++.|..+.+.++.-+....-....+.+..++-+++.+++..+.+++..+..+.+.-..+.+.+.--.+++.|..+ +..
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 456777777777544444333345555554444459999999999999999998888888888767777777765 445
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCC
Q 008585 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI 332 (560)
Q Consensus 253 ~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~ 332 (560)
-|++|...++.+..-++.... ...|.++.++.+..+.+...+..|..+|+.++- -+.+.+.+.|++..+++.+-++.
T Consensus 84 ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l--~~P~lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELAL--LNPELVAECGGIRVLLRALIDGS 160 (371)
T ss_pred HHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh--hCHHHHHHcCCHHHHHHHHHhcc
Confidence 688999999988654333222 245677999999999999999999999999986 23355678999999999998876
Q ss_pred chhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC-----------ccHHHHHHHHHHhhcc-ccHHHHH--h
Q 008585 333 LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP-----------LPQESAVGALRNLVGS-VSQEVLI--S 398 (560)
Q Consensus 333 ~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~-----------~~~~~a~~~L~nla~~-~~~~~l~--~ 398 (560)
. ++.+..+.++..+... +..|+++...--++.++.-+.+. +....+..++..+-++ .+--.+. +
T Consensus 161 ~-~~~~~l~~~lL~lLd~-p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 161 F-SISESLLDTLLYLLDS-PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred H-hHHHHHHHHHHHHhCC-cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 5 6888888888888764 56566565544566666655332 1223344444444431 1111111 1
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--h----------------hH---------------------------
Q 008585 399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--A----------------EM--------------------------- 433 (560)
Q Consensus 399 ~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~----------------~~--------------------------- 433 (560)
...+..|+..|..++++++......+..+-.- + ..
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l 318 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNL 318 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccH
Confidence 14677888888888888888887777776421 0 00
Q ss_pred --------HHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhc
Q 008585 434 --------KKLVGEAGCTPLLIKLLEAK-PNSVREVAAQAISSLV 469 (560)
Q Consensus 434 --------~~~i~~~g~i~~Lv~ll~s~-~~~v~~~A~~aL~~L~ 469 (560)
-..+.++|.++.|+++..+. +..+..+|.-.|+.+.
T Consensus 319 ~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 319 VNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 12335677888888888765 6667777777777663
No 65
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00015 Score=76.94 Aligned_cols=333 Identities=17% Similarity=0.169 Sum_probs=203.4
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---------------
Q 008585 164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--------------- 228 (560)
Q Consensus 164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--------------- 228 (560)
++.+.+.+..|+..|..+..-.-+.-..-.+......-+.-++++++++..+++..-++++..+-
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 46678889999999999987555443333344455556667788899999999999998876431
Q ss_pred --hHHHHH--hCCCHHHHHHhhhcC-------CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHH----HHhccCChH
Q 008585 229 --CENWLV--SEGVLPPLIRLVESG-------STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI----EICQTGDSV 293 (560)
Q Consensus 229 --~~~~l~--~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv----~ll~~~~~~ 293 (560)
+..... -.+++|.|+++|... ++.....|..||.-++. .+....++..+ +-++++++.
T Consensus 307 p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr 379 (859)
T KOG1241|consen 307 PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWR 379 (859)
T ss_pred chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchh
Confidence 011111 125678888888642 34455566666666543 12223334333 355678899
Q ss_pred HHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHH-HhCCCHHHHHHhc
Q 008585 294 SQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV-VSEGGIRSLLAYL 371 (560)
Q Consensus 294 ~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i-~~~g~l~~L~~ll 371 (560)
-+..++.+++.+-..+ ..+-.-...+++|.++.++.++.- .++..+.++|+.++...++.+... .-.+.++.++.-+
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl-~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL 458 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL-WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL 458 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh-hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh
Confidence 9999999999887655 444444457899999999997665 889999999999998666433211 1244566666666
Q ss_pred cC-CccHHHHHHHHHHhhc--c----cc-HHHHHhCCcHHHHHHHH-hc------CCHHHHHHHHHHHHHHhCC-hhHHH
Q 008585 372 DG-PLPQESAVGALRNLVG--S----VS-QEVLISLGFFPRLVHVL-KA------GSLGAQQAAASALCRVCTS-AEMKK 435 (560)
Q Consensus 372 ~~-~~~~~~a~~~L~nla~--~----~~-~~~l~~~~~i~~Lv~lL-~~------~~~~v~~~A~~aL~~La~~-~~~~~ 435 (560)
.+ |.+..+++|++.+|+. . ++ +..... .+.+.++.-| .. .+..++..|..+|..+..+ ++..-
T Consensus 459 ~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy 537 (859)
T KOG1241|consen 459 NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVY 537 (859)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHH
Confidence 55 8999999999999995 1 11 111111 3444444333 21 2368899999999999854 33322
Q ss_pred HHHhcCCHHHHHH---------HHcc----CCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhH
Q 008585 436 LVGEAGCTPLLIK---------LLEA----KPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAK 501 (560)
Q Consensus 436 ~i~~~g~i~~Lv~---------ll~s----~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~ 501 (560)
.+.. +....... .+.. .-.+++..-+.+|..+... .+..++.. +..+..++++++++....+.
T Consensus 538 ~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~--d~iM~lflri~~s~~s~~v~ 614 (859)
T KOG1241|consen 538 PMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS--DQIMGLFLRIFESKRSAVVH 614 (859)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH--HHHHHHHHHHHcCCccccch
Confidence 2211 11221111 2211 1234667777777777632 33333333 24457778888884322333
Q ss_pred HHHHHHH
Q 008585 502 KYAVACL 508 (560)
Q Consensus 502 ~~a~~~L 508 (560)
+.++.++
T Consensus 615 e~a~laV 621 (859)
T KOG1241|consen 615 EEAFLAV 621 (859)
T ss_pred HHHHHHH
Confidence 3333333
No 66
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.31 E-value=0.00015 Score=74.96 Aligned_cols=210 Identities=16% Similarity=0.026 Sum_probs=154.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS 235 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~ 235 (560)
+..++..|...++.++..++.+|..+- ..+..+.|+.+|++.++.++..++.+++...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 677777887777778888887776531 2346788999999999999998887777622
Q ss_pred CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML 315 (560)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (560)
....+.+..+|++.++.++..|+.+|..+-. ...++.|...+.+.++.++..|+.++..+..
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------- 207 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------- 207 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence 2346789999999999999999999999743 3445678888999999999999999976643
Q ss_pred HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHH
Q 008585 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEV 395 (560)
Q Consensus 316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~ 395 (560)
..++..+..+...... ........++... . ++ ..++.|..+++++.++..++.+++.+-.
T Consensus 208 --~~A~~~l~~~~~~~g~-~~~~~l~~~lal~-~-~~---------~a~~~L~~ll~d~~vr~~a~~AlG~lg~------ 267 (410)
T TIGR02270 208 --RLAWGVCRRFQVLEGG-PHRQRLLVLLAVA-G-GP---------DAQAWLRELLQAAATRREALRAVGLVGD------ 267 (410)
T ss_pred --HhHHHHHHHHHhccCc-cHHHHHHHHHHhC-C-ch---------hHHHHHHHHhcChhhHHHHHHHHHHcCC------
Confidence 2345666664443332 3333333333332 2 22 2378888889888899999999998863
Q ss_pred HHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585 396 LISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 396 l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~ 430 (560)
...++.|+..+... .+...|..++..++.-
T Consensus 268 ---p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 268 ---VEAAPWCLEAMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred ---cchHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence 45688888888644 3999999999999853
No 67
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.9e-05 Score=80.82 Aligned_cols=331 Identities=16% Similarity=0.147 Sum_probs=207.6
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh--hhH
Q 008585 194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--EMA 271 (560)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~ 271 (560)
-++.+++.+..+...+..+|-.|+..+.+++.-........-......+.++..+.+..++. ++..+.++-.+- +..
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccc
Confidence 34689999999999999999999999999987543222223334566666666666665544 556666664321 111
Q ss_pred HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCch--hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHH---
Q 008585 272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE--VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN--- 346 (560)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~--~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~--- 346 (560)
..|-=.+.+|.|-+.+...+|..|.....-|..|-..|+ ....+ ...++-|++.|.++++ +++..+=.+|.+
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl--~~~ldGLf~~LsD~s~-eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYL--PSLLDGLFNMLSDSSD-EVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcc--hHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHH
Confidence 123223445555555556789999988888887765553 33333 4477888899998886 788666554444
Q ss_pred -HccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCH-HHHHHHH
Q 008585 347 -LTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSL-GAQQAAA 421 (560)
Q Consensus 347 -La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~-~v~~~A~ 421 (560)
+.+..... --...++.++.-+.+ +.++..|+.-|..+.. +...-...-.|++..++..+.+.++ .++..+.
T Consensus 238 eI~s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 238 EIRSSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHhcCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 44332221 112235555555554 5678888888888877 2222222345666677777766554 3444333
Q ss_pred H---HHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCch
Q 008585 422 S---ALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQN 498 (560)
Q Consensus 422 ~---aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~ 498 (560)
. .+..+...+.....+--...++.|.+.+.+...+.|..++.-+..|-...++.--.. .+.....|+.-|.++ .+
T Consensus 314 ~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tLsd~-sd 391 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTLSDR-SD 391 (675)
T ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhhcCc-hh
Confidence 3 344444443332222112367888888888889999999999999976666644333 345567777777765 34
Q ss_pred hhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchh
Q 008585 499 TAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG 540 (560)
Q Consensus 499 ~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~ 540 (560)
.+...++..+.++|.+++.. |..+++..|+++=-++
T Consensus 392 ~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSNSP------NLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHHHHHHHHhcCcccc------cHHHHHHHHHHHHhhh
Confidence 67889999999999877543 5566666666655443
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=8.6e-05 Score=78.22 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=160.1
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHH
Q 008585 238 VLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQML 315 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i 315 (560)
.-+-++.+|++.-+-+|..|...+.++... |+.-+ .++|.|.+-|.++||.++.+|..+++.|+. +|.+.-.
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence 356678899999999999999999999775 33322 234999999999999999999999999996 6666533
Q ss_pred HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC---ccHHHHHHHHHH--hhc-
Q 008585 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP---LPQESAVGALRN--LVG- 389 (560)
Q Consensus 316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~---~~~~~a~~~L~n--la~- 389 (560)
.-|.+.+++.+.+.-.+....+...++|+--.|.+.. ..+++|..++.++ ++...++.++.. +..
T Consensus 219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 3588999987654436888888899999876665543 3488899998773 233333333322 222
Q ss_pred cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (560)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L 468 (560)
.....+.+ .-.+..|-.++.+.|+.++...+.+++.++. ++..-.+- -+.+++.|..+++.+|.+|+..|.-+
T Consensus 290 ~~d~~asi-qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 290 MSDHSASI-QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred CCCcHHHH-HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11111111 1247778888889999999999999999984 34443332 56678899999999999999999988
Q ss_pred cCCChhhHHHhh
Q 008585 469 VTLPQNCREVKR 480 (560)
Q Consensus 469 ~~~~~~~~~~~~ 480 (560)
.+..|..++++
T Consensus 364 -VskkNl~eIVk 374 (877)
T KOG1059|consen 364 -VSKKNLMEIVK 374 (877)
T ss_pred -hhhhhHHHHHH
Confidence 46667666654
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.00059 Score=74.62 Aligned_cols=322 Identities=14% Similarity=0.182 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHhcCCc-hHH----HHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHH
Q 008585 211 RIREKTVTVICSLAESGS-CEN----WLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI 284 (560)
Q Consensus 211 ~v~~~A~~~L~~La~~~~-~~~----~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv 284 (560)
+-.+.++.+|.|+....+ ... ...--|.++.+..+|.. +++.++.-|..++..++.+.++...++..|.+..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 345678899999876543 211 11223567777777765 478899999999999999999999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC---hhHH------
Q 008585 285 EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN---ENLR------ 355 (560)
Q Consensus 285 ~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~---~~~~------ 355 (560)
.+|.+ -|..|..++.+|+.|++++++...-.+.|++..+..++-..+....+..++..++.+..+. +..+
T Consensus 1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 99975 6889999999999999999999999999999888888776555578899999999987621 1111
Q ss_pred -----HHHHhCCCHHHHHHhccC----Cc------cHHHHHHHHHHhhcc------c-------cHH-------------
Q 008585 356 -----RSVVSEGGIRSLLAYLDG----PL------PQESAVGALRNLVGS------V-------SQE------------- 394 (560)
Q Consensus 356 -----~~i~~~g~l~~L~~ll~~----~~------~~~~a~~~L~nla~~------~-------~~~------------- 394 (560)
..+++. +-+..+.++++ |+ .+...-..+..++.. . .++
T Consensus 1899 LP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1899 LPEIFADSLRD-SPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred chHHHHHHHhc-CHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 111111 22555555543 21 233333344444320 0 000
Q ss_pred --------HH------------HhCCcHHHHHHHHhcCCH--HHHHHHHHHHHH-HhCChhHHHHHHhcCCHHHHHHHHc
Q 008585 395 --------VL------------ISLGFFPRLVHVLKAGSL--GAQQAAASALCR-VCTSAEMKKLVGEAGCTPLLIKLLE 451 (560)
Q Consensus 395 --------~l------------~~~~~i~~Lv~lL~~~~~--~v~~~A~~aL~~-La~~~~~~~~i~~~g~i~~Lv~ll~ 451 (560)
.+ .-.+.++.+..+|...++ ..-..-..++.. +..++.....+..-|.+|.++..+.
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 01 122345556666654332 222222223333 3345777888888899999999997
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC--ChhhHHHHHHcChhHH
Q 008585 452 AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP--SKKCKKLMISYGAIGY 529 (560)
Q Consensus 452 s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~--~~~~r~~i~~~g~i~~ 529 (560)
..+..+-..|..+|-.|+.+.-.++.+.. -..+..++..+.... .....++.++..+.. ....-.+..+.|.+++
T Consensus 2058 ~~n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK~~--~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpy 2134 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKKQP--SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPY 2134 (2235)
T ss_pred hcCCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHhcc--hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHH
Confidence 66666668889999999877776666654 344556777776653 234467777776654 2245566678999999
Q ss_pred HHHhhccC
Q 008585 530 LKKLSEMD 537 (560)
Q Consensus 530 L~~L~~~~ 537 (560)
|.+|++..
T Consensus 2135 LL~LLd~~ 2142 (2235)
T KOG1789|consen 2135 LLQLLDSS 2142 (2235)
T ss_pred HHHHhccc
Confidence 99998754
No 70
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.001 Score=71.02 Aligned_cols=293 Identities=15% Similarity=0.145 Sum_probs=167.2
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
+..+++..++...+.+.++|.-.-..|.+.+.+++.-. -=-|..+.+-|+.+++.+|..|+++|..+--
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv------ 137 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV------ 137 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch------
Confidence 55578888888899999999888888999988766321 1237788889999999999999888876532
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh-hCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP- 309 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~- 309 (560)
.++..=++-.+-+...+.++-+|..|+.++-+| +.+++.+.++. ..+-.+|.+.+|.+...|+.+.-.+|.+.
T Consensus 138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl 212 (968)
T KOG1060|consen 138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL 212 (968)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH
Confidence 222111222333445566788888888888888 44555554443 23334444444443333333333222100
Q ss_pred -----h---hH-----------------------HHHHhc----------C------------------------cHHHH
Q 008585 310 -----E---VR-----------------------QMLAEE----------G------------------------IVSVM 324 (560)
Q Consensus 310 -----~---~~-----------------------~~i~e~----------g------------------------~v~~L 324 (560)
. .| ..+.+. | .+...
T Consensus 213 dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~st 292 (968)
T KOG1060|consen 213 DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQST 292 (968)
T ss_pred HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhc
Confidence 0 00 000000 0 11122
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHHHHHhhc--c----ccHH---
Q 008585 325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVG--S----VSQE--- 394 (560)
Q Consensus 325 ~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~L~nla~--~----~~~~--- 394 (560)
-.++.+.+. .|...++.+.+.++-.++. ...+.+|+++|.+ +.++...+..|..++. + +..+
T Consensus 293 kpLl~S~n~-sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf 364 (968)
T KOG1060|consen 293 KPLLQSRNP-SVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFF 364 (968)
T ss_pred cHHHhcCCc-HHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceE
Confidence 223345555 6777777777777754321 1125566666654 5555555555555543 0 0000
Q ss_pred ------------------HHHhCCc----HHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHc
Q 008585 395 ------------------VLISLGF----FPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLE 451 (560)
Q Consensus 395 ------------------~l~~~~~----i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~ 451 (560)
.+..++- ++-+-.++++.+..+...|..+|+.++.. .. +...++..|+.++.
T Consensus 365 v~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Lls 439 (968)
T KOG1060|consen 365 VRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLS 439 (968)
T ss_pred eecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHh
Confidence 0112222 33334445555656777777888877743 11 12346778888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCh
Q 008585 452 AKPNSVREVAAQAISSLVTLPQ 473 (560)
Q Consensus 452 s~~~~v~~~A~~aL~~L~~~~~ 473 (560)
+.+..|-..+...+..|....+
T Consensus 440 shde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 440 SHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred cccchhHHHHHHHHHHHHhhCh
Confidence 8888888888888888875443
No 71
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.24 E-value=1.4e-05 Score=66.84 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=109.5
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh
Q 008585 198 IAALVQLL-TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG 276 (560)
Q Consensus 198 v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~ 276 (560)
+..|+.-. ...+.+.+++...-|.+++.++.+...+.+.++++.++..|...+....+.+...|+|++.++.++..|.+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e 97 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence 44444333 24568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHH
Q 008585 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKL 327 (560)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~l 327 (560)
.++++.++..+.++...+...++.++..|+..+ ..+..+.....+.++...
T Consensus 98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 999999999999888888999999999998744 556666555555555443
No 72
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0033 Score=67.58 Aligned_cols=349 Identities=16% Similarity=0.178 Sum_probs=198.3
Q ss_pred hhhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585 149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (560)
.|-.+...++.-..++..++-.+.+|+-+...+....|+... -.++..-++|.+.+..+...++..+..++...+
T Consensus 137 ~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 137 PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 444566667777778889999999999999999887775433 345666777877777888888888888877643
Q ss_pred -hHHHHHhCCCHHHHHHhhhc---------------CCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccC-
Q 008585 229 -CENWLVSEGVLPPLIRLVES---------------GSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTG- 290 (560)
Q Consensus 229 -~~~~l~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~- 290 (560)
.-..+.+ .++.++..|++ .+|.++....+.|+-|..++ +..+.+. ..|-+++...
T Consensus 212 ~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~-----DiLaqvatntd 284 (866)
T KOG1062|consen 212 DALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN-----DILAQVATNTD 284 (866)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHHhccc
Confidence 2222222 56666666652 27888888998888887754 3344332 2333344321
Q ss_pred -----ChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHH
Q 008585 291 -----DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR 365 (560)
Q Consensus 291 -----~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~ 365 (560)
...+...+..++..+-.+++.+.. ++..+-++|.+.+. .+|+-++..|......++..-+.- =.
T Consensus 285 sskN~GnAILYE~V~TI~~I~~~~~Lrvl-----ainiLgkFL~n~d~-NirYvaLn~L~r~V~~d~~avqrH-----r~ 353 (866)
T KOG1062|consen 285 SSKNAGNAILYECVRTIMDIRSNSGLRVL-----AINILGKFLLNRDN-NIRYVALNMLLRVVQQDPTAVQRH-----RS 353 (866)
T ss_pred ccccchhHHHHHHHHHHHhccCCchHHHH-----HHHHHHHHhcCCcc-ceeeeehhhHHhhhcCCcHHHHHH-----HH
Confidence 123445555555555444443322 35556666665554 566777776666666544322111 12
Q ss_pred HHHHhccCC--ccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhH-------H
Q 008585 366 SLLAYLDGP--LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEM-------K 434 (560)
Q Consensus 366 ~L~~ll~~~--~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~-------~ 434 (560)
.+++.+++| .++..|+..+..|....+... .+..|+.+|.+.+++.+...+.-+..++.. |+. -
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml 428 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNESNVRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTML 428 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhccccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 355566653 346666666666665444332 355666677666766666666666666522 221 1
Q ss_pred HHHHh------cCCHHHHHHHHccC-------------------------CHHHHHHHHHHHHHhc---CCChhh--HHH
Q 008585 435 KLVGE------AGCTPLLIKLLEAK-------------------------PNSVREVAAQAISSLV---TLPQNC--REV 478 (560)
Q Consensus 435 ~~i~~------~g~i~~Lv~ll~s~-------------------------~~~v~~~A~~aL~~L~---~~~~~~--~~~ 478 (560)
+.+.. ...+..++.++.+. .+.+...|.|+|..-. .+..+. ...
T Consensus 429 ~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~ 508 (866)
T KOG1062|consen 429 KVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIK 508 (866)
T ss_pred HHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCc
Confidence 11111 12445555555433 1223344555555443 111111 111
Q ss_pred hhhCCChHHHHhccCCC-CchhhHHHHHHHHHHhCC-----ChhhHHHHHHcC
Q 008585 479 KRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSP-----SKKCKKLMISYG 525 (560)
Q Consensus 479 ~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~-----~~~~r~~i~~~g 525 (560)
+.++..+..+..++.+. ...+.+.|++.++.-|+. .+..++.|.+.+
T Consensus 509 vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~ 561 (866)
T KOG1062|consen 509 VTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYK 561 (866)
T ss_pred CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 22334556666666554 234689999999988773 334555554443
No 73
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.12 E-value=1.3e-05 Score=67.08 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=110.1
Q ss_pred HHHHHHhh-hcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585 239 LPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (560)
Q Consensus 239 i~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (560)
+..|+.-. ...+.+.++....-|.|.+-+|-|-..+.+.+++..++.-+..++..++..+.+.|+|+|.++.+.+.|.+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e 97 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence 44555433 34588899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHH
Q 008585 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA 369 (560)
Q Consensus 318 ~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ 369 (560)
.+++|.++..+.++.. .+...++.++..|+..+...|..+....+++.+.+
T Consensus 98 a~g~plii~~lssp~e-~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPE-ITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred hcCCceEEeecCCChH-HHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 9999999999988886 78889999999999877776776665544444433
No 74
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.0011 Score=68.32 Aligned_cols=355 Identities=16% Similarity=0.199 Sum_probs=208.8
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---hHHHH-------
Q 008585 164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWL------- 233 (560)
Q Consensus 164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l------- 233 (560)
+..+.+.+..|.-.|..+..-.-+.-....+.-......+.+++++.++..+|+..-+.+++.+- ....-
T Consensus 231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~q 310 (858)
T COG5215 231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQ 310 (858)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchh
Confidence 45677888888888888876555554555555556667788899999999999998888876431 11100
Q ss_pred -------HhCCCHHHHHHhhhcC-------CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHH----hccCChHHH
Q 008585 234 -------VSEGVLPPLIRLVESG-------STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI----CQTGDSVSQ 295 (560)
Q Consensus 234 -------~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~l----l~~~~~~~~ 295 (560)
.-.+++|.|+.+|... ++.....|..||.-.+... ....+++.+.+ ++++++.-+
T Consensus 311 n~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~-------gd~i~~pVl~FvEqni~~~~w~nr 383 (858)
T COG5215 311 NHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK-------GDKIMRPVLGFVEQNIRSESWANR 383 (858)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh-------hhHhHHHHHHHHHHhccCchhhhH
Confidence 0224789999999762 4455666777776665422 12223344444 456788889
Q ss_pred HHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH-----HH
Q 008585 296 AAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS-----LL 368 (560)
Q Consensus 296 ~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~-----L~ 368 (560)
..+..+++.+-..+ .....++ ..++|.+.....++. ..++..+++|++.|+.+ ....+-..|-++. +.
T Consensus 384 eaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~li 458 (858)
T COG5215 384 EAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC-LWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLI 458 (858)
T ss_pred HHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce-eehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHh
Confidence 99999999987644 3344444 467888888887655 48999999999999853 3333434554333 33
Q ss_pred HhccCCccHHHHHHHHHHhhc--cccHH--HHHhCCcHHHHHHHHh------cCCHHHHHHHHHHHHHHhCC-hh-HHHH
Q 008585 369 AYLDGPLPQESAVGALRNLVG--SVSQE--VLISLGFFPRLVHVLK------AGSLGAQQAAASALCRVCTS-AE-MKKL 436 (560)
Q Consensus 369 ~ll~~~~~~~~a~~~L~nla~--~~~~~--~l~~~~~i~~Lv~lL~------~~~~~v~~~A~~aL~~La~~-~~-~~~~ 436 (560)
.+.+.|....++.|.+.|+.. +.... .-.-..+.+.++..|- ..+...+..+..+|+.|... ++ ....
T Consensus 459 Gl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~ 538 (858)
T COG5215 459 GLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDI 538 (858)
T ss_pred hhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHH
Confidence 344668899999999999987 21110 0111234444444332 23456777777788776522 22 1111
Q ss_pred HH-------h--cCCHHHHHHHHccC----CHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHH
Q 008585 437 VG-------E--AGCTPLLIKLLEAK----PNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKK 502 (560)
Q Consensus 437 i~-------~--~g~i~~Lv~ll~s~----~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~ 502 (560)
+. + ..++..+-+.+... .++++..-+..|..+... .++.+.. .+..+..++++|++..+..+..
T Consensus 539 ~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v--~D~lm~Lf~r~les~~~t~~~~ 616 (858)
T COG5215 539 LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV--EDQLMELFIRILESTKPTTAFG 616 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH--HHHHHHHHHHHHhccCCchhhh
Confidence 10 0 12344444444322 234666666666666522 2222211 1123577788888874444444
Q ss_pred HHHHHHHHhCCChhhHHHHHHcChhHHHHH
Q 008585 503 YAVACLASLSPSKKCKKLMISYGAIGYLKK 532 (560)
Q Consensus 503 ~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~ 532 (560)
-...++.+|+.+-+-|-.-.-..++|||.+
T Consensus 617 dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~ 646 (858)
T COG5215 617 DVYTAISALSTSLEERFEQYASKFIPYLTR 646 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 444555555543333333334455555553
No 75
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.005 Score=66.04 Aligned_cols=280 Identities=13% Similarity=0.142 Sum_probs=189.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS 235 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~ 235 (560)
-.+|...|.+.....+.+|++.+..+...+... ....+..++...+.+.+++...---|...|+..+.-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 356778888888899999999888887654432 135677888888899999998888888888776532221
Q ss_pred CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHH
Q 008585 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQM 314 (560)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~ 314 (560)
-|..+-+.|++.++-+|..|.++|..+-...-..- .+-++-+...+..|.+|..|+-|+-.|=+ +++-+..
T Consensus 109 --SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI------~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 109 --SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPI------MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred --eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHH------HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 47788889999999999999999888733211111 11233355567899999999999988854 4444443
Q ss_pred HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhcc--
Q 008585 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS-- 390 (560)
Q Consensus 315 i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~-- 390 (560)
+ +..+=.||.+.++ .|.-.|+.+...+|-+. -+ ++ .+-...+.+++.+ ..-|...+..|..-|+.
T Consensus 181 L-----~e~I~~LLaD~sp-lVvgsAv~AF~evCPer---ld-LI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l 249 (968)
T KOG1060|consen 181 L-----EEVIKKLLADRSP-LVVGSAVMAFEEVCPER---LD-LI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQL 249 (968)
T ss_pred H-----HHHHHHHhcCCCC-cchhHHHHHHHHhchhH---HH-Hh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcC
Confidence 3 4555567777776 78899999999888532 12 22 2235666777655 44567777777777661
Q ss_pred --c-cHHHHH-hCC------------------------cHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCC
Q 008585 391 --V-SQEVLI-SLG------------------------FFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGC 442 (560)
Q Consensus 391 --~-~~~~l~-~~~------------------------~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~ 442 (560)
+ ...... ..| ++...-.+|.+.++.|...++.+.+.++-..+. .++
T Consensus 250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i 323 (968)
T KOG1060|consen 250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKI 323 (968)
T ss_pred CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHH
Confidence 1 100000 001 122233456778899999999999999954322 345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 443 TPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 443 i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
+++|+++|.+. .++|...+..+..++
T Consensus 324 ~kaLvrLLrs~-~~vqyvvL~nIa~~s 349 (968)
T KOG1060|consen 324 AKALVRLLRSN-REVQYVVLQNIATIS 349 (968)
T ss_pred HHHHHHHHhcC-CcchhhhHHHHHHHH
Confidence 88999988754 567877777777775
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00022 Score=76.18 Aligned_cols=332 Identities=17% Similarity=0.131 Sum_probs=204.5
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch-H
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC-E 230 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~-~ 230 (560)
....+.++...++.+++.++..++.....+-..++ ..+.+.|.++.|-.++.++++.+...|+.+|..+...... -
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 45567788899999999999999888888865554 4566789999999999988999999999999999876542 1
Q ss_pred HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh-hHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc
Q 008585 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (560)
......-.+..++..+...+...+.....++.+-.-.++ ....++ ..+...+.+.++.+...+..++.++...-
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~-----~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDIC-----ERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHH-----HHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 111111234444555555555555555555544433322 233333 66667777778888888888888776532
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhc
Q 008585 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG 389 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~ 389 (560)
...........-+.++.++.+.. ++++.++.=+.-+....++. .....---++++.+.--+...=+.++..++.
T Consensus 271 ~~~~~~~~~K~~~pl~tlls~~~--e~qyvaLrNi~lil~~~p~~----~~~~~~~Ff~kynDPiYvK~eKleil~~la~ 344 (734)
T KOG1061|consen 271 KQVNELLFKKVAPPLVTLLSSES--EIQYVALRNINLILQKRPEI----LKVEIKVFFCKYNDPIYVKLEKLEILIELAN 344 (734)
T ss_pred HHHHHHHHHHhcccceeeecccc--hhhHHHHhhHHHHHHhChHH----HHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence 22223333445566777776655 57776666555555444431 1111111111111212345555666666665
Q ss_pred cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
..+..+ ++.-+...-..-+.+..+.+.+++++++...+-. .+++..|++++..+-.-+...+...+..+.
T Consensus 345 ~~nl~q-----vl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dil 414 (734)
T KOG1061|consen 345 DANLAQ-----VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDIL 414 (734)
T ss_pred HhHHHH-----HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhh
Confidence 333322 3455555555667888899999999998542221 678999999998776666667788888887
Q ss_pred CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 470 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
..-++.-+- .+..+..-+++-.+++.|.+.+.++..-+
T Consensus 415 RkyP~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~ 452 (734)
T KOG1061|consen 415 RKYPNKYES-----VVAILCENLDSLQEPEAKAALIWILGEYA 452 (734)
T ss_pred hcCCCchhh-----hhhhhcccccccCChHHHHHHHHHHhhhh
Confidence 655554321 23444445554444556766666665443
No 77
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0025 Score=68.40 Aligned_cols=322 Identities=12% Similarity=0.159 Sum_probs=175.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCC
Q 008585 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG 237 (560)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g 237 (560)
+.++.+.+++--.|+-.--+..-++.++.+-... .+..|.+=|++++..++-.|+.+|++++..+-.|.
T Consensus 74 eclKLias~~f~dKRiGYLaamLlLdE~qdvllL-----ltNslknDL~s~nq~vVglAL~alg~i~s~Emard------ 142 (866)
T KOG1062|consen 74 ECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLL-----LTNSLKNDLNSSNQYVVGLALCALGNICSPEMARD------ 142 (866)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccchHHHHH-----HHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHH------
Confidence 4455556666444443333333333333222111 23344445667778888899999999987654443
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHH
Q 008585 238 VLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQML 315 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i 315 (560)
+.|-+-++|+..++.+|.+|+.|..++-. .|+....|. +....+|.+.+..+...+...+..++. +++.-..+
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f 217 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF 217 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence 46788889999999999999999988865 355444443 455555555666666555555555554 34444444
Q ss_pred HhcCcHHHHHHHhhc---------------CCchhHHHHHHHHHHHHccCChhHHHHHHh--------------CC----
Q 008585 316 AEEGIVSVMIKLLDC---------------GILLGSKEYAAECLQNLTASNENLRRSVVS--------------EG---- 362 (560)
Q Consensus 316 ~e~g~v~~L~~lL~~---------------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~--------------~g---- 362 (560)
.+ .++-|+..|+. .++ .+|...++.|+-+..+++...+.+.+ .|
T Consensus 218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dP-FLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAIL 294 (866)
T KOG1062|consen 218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDP-FLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAIL 294 (866)
T ss_pred HH--HHHHHHHHHHHHhcCCCCCccCccCCCch-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHH
Confidence 43 44455554431 122 56666666666666554433322211 00
Q ss_pred --CHHHHHHhccCCccHHHHHHHHHHhhcc--ccHH-----H---H--HhCCc----HHHHHHHHhcCCHHHHHHHHHHH
Q 008585 363 --GIRSLLAYLDGPLPQESAVGALRNLVGS--VSQE-----V---L--ISLGF----FPRLVHVLKAGSLGAQQAAASAL 424 (560)
Q Consensus 363 --~l~~L~~ll~~~~~~~~a~~~L~nla~~--~~~~-----~---l--~~~~~----i~~Lv~lL~~~~~~v~~~A~~aL 424 (560)
.+..+..+-.++..++.|+.+|+.+-.+ .+.+ . + .+... -..+++.|++.|+.+++.|.+.+
T Consensus 295 YE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs 374 (866)
T KOG1062|consen 295 YECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS 374 (866)
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1222333333356677777777776651 1111 0 0 01111 23456666677777777777777
Q ss_pred HHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc-CCChhhHHHhhhCCChHHHHhccCCCCchhhHHH
Q 008585 425 CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY 503 (560)
Q Consensus 425 ~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~ 503 (560)
..|......+ .| ++.|+.+|.+.+++.+...+.-++.++ ...++.+ ..+..+...+.... +-++.-
T Consensus 375 ~~lvn~~Nv~-~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~------W~idtml~Vl~~aG-~~V~~d 441 (866)
T KOG1062|consen 375 YALVNESNVR-VM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKR------WHIDTMLKVLKTAG-DFVNDD 441 (866)
T ss_pred HHHhccccHH-HH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch------hHHHHHHHHHHhcc-cccchh
Confidence 7766443322 22 555677776667777777777677776 2233222 22455666665542 234555
Q ss_pred HHHHHHHh
Q 008585 504 AVACLASL 511 (560)
Q Consensus 504 a~~~L~~L 511 (560)
.+..+..|
T Consensus 442 v~~nll~L 449 (866)
T KOG1062|consen 442 VVNNLLRL 449 (866)
T ss_pred hHHHHHHH
Confidence 55544433
No 78
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.001 Score=68.65 Aligned_cols=310 Identities=18% Similarity=0.183 Sum_probs=190.1
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh----------------------HHH-----------HHHhhC-C-
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE----------------------KNV-----------LAVMGR-S- 196 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~----------------------~~~-----------~~i~~~-g- 196 (560)
....+++.+.+....+..++..|++++.++++-.. .++ +.++.+ .
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 45557777777777777777777777777653211 110 122211 1
Q ss_pred --CHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh----hC
Q 008585 197 --NIAALVQLLTA----TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL----SM 266 (560)
Q Consensus 197 --~v~~Lv~lL~~----~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L----a~ 266 (560)
.++.++.+|+. .++..|..-+.-|..|-..++..-.-.-...++.|.++|.+.+.+++..+-.++.++ ..
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 14455555543 356777777777776655554221112234678888999999999998777666555 32
Q ss_pred ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHH---
Q 008585 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAEC--- 343 (560)
Q Consensus 267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~--- 343 (560)
+|+.. --...++.++..+.++++.++..|..-+.....-++..-...-.|++..++..+.+.+...+++.+...
T Consensus 242 ~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 242 SPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred Ccccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 33221 113456888899999999999888766665554322222222255666666666655542355554433
Q ss_pred HHHHccCChhHHHHHHh-CCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 008585 344 LQNLTASNENLRRSVVS-EGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQA 419 (560)
Q Consensus 344 L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~ 419 (560)
|..+... +...+. ++ ...++.+.+++.+ ...+..++.-+..+-. ..++-........+.|+..|.+.+.+|...
T Consensus 319 l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~ 396 (675)
T KOG0212|consen 319 LLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLL 396 (675)
T ss_pred HHHHHhh-hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHH
Confidence 3333332 211112 22 2246677777765 4567788877777766 455555566778899999999999999999
Q ss_pred HHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 420 AASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 420 A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
+...+.++|.+++.... ..++..|+++......-+..++.-.+..||
T Consensus 397 ~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 397 ALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred HHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 99999999987544322 123445555555555556777888888887
No 79
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.0014 Score=67.65 Aligned_cols=287 Identities=13% Similarity=0.124 Sum_probs=173.2
Q ss_pred HHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHH
Q 008585 161 ARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240 (560)
Q Consensus 161 ~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~ 240 (560)
..|.....-+..++++.+..++.++-.. ...+ ..+..|-.+|+++....|-.|+++|..|+...+.+-.+.+ +
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~nv~~--~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN----~ 343 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEENVGS--QFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN----K 343 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhccCH--HHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC----h
Confidence 3444444566777777777776544111 1111 2466677777787788888888888888875543222211 1
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcC
Q 008585 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEG 319 (560)
Q Consensus 241 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g 319 (560)
-+=.++.+.+..+..+|...|.+-.. +++...++ ..+..+..+-+...+.-+..+++.|+- .|.-+..+
T Consensus 344 evEsLIsd~Nr~IstyAITtLLKTGt-~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~---- 413 (898)
T COG5240 344 EVESLISDENRTISTYAITTLLKTGT-EETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY---- 413 (898)
T ss_pred hHHHHhhcccccchHHHHHHHHHcCc-hhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH----
Confidence 22233445555555566555554322 33332222 333344444444455555555655553 23222222
Q ss_pred cHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhc--cccHHHHH
Q 008585 320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG--SVSQEVLI 397 (560)
Q Consensus 320 ~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~--~~~~~~l~ 397 (560)
+..|...|.+....+.+..+..++..+....+..++.+ ++.|..++++....+.++++|+-|.. +....
T Consensus 414 -l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~--- 484 (898)
T COG5240 414 -LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCEYHQITVRILGILGREGPRAKT--- 484 (898)
T ss_pred -HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC---
Confidence 33444444332223788888889888888777666544 77888888888888888888888887 22211
Q ss_pred hCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCCh---hHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChh
Q 008585 398 SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA---EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN 474 (560)
Q Consensus 398 ~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~---~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~ 474 (560)
-..++.++.+-+--.+.-++..|..+|..++-+. -..+ .+...|-+.+...+.++|+.|..+|.++- ..+.
T Consensus 485 P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~-----sv~~~lkRclnD~DdeVRdrAsf~l~~~~-~~da 558 (898)
T COG5240 485 PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ-----SVENALKRCLNDQDDEVRDRASFLLRNMR-LSDA 558 (898)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH-----HHHHHHHHHhhcccHHHHHHHHHHHHhhh-hhhh
Confidence 1235666666665678889999999999998651 1222 23556778888999999999999999994 4444
Q ss_pred hHHHh
Q 008585 475 CREVK 479 (560)
Q Consensus 475 ~~~~~ 479 (560)
+..++
T Consensus 559 ~~pl~ 563 (898)
T COG5240 559 CEPLF 563 (898)
T ss_pred hhccc
Confidence 44433
No 80
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.03 E-value=0.0027 Score=64.92 Aligned_cols=228 Identities=17% Similarity=0.090 Sum_probs=157.7
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCchhHHHH
Q 008585 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQML 315 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (560)
..+.+..++-+++..++..+.++++.+..+++....+.+.+.--.++.-+.. ....=|..|...++.+...++..+.
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 4455554555555999999999999999999888888887765555555543 2344567888888777654322222
Q ss_pred HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-ccc
Q 008585 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVS 392 (560)
Q Consensus 316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~ 392 (560)
.-.|.+..++.+.++.++ ..+..|+++|++++-.++. .+++.||+..+++.+-+ .+..+..+.++..+.. +..
T Consensus 105 ~~~~vvralvaiae~~~D-~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDD-RLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred CCHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence 246789999999999887 8999999999999998874 57899999999999865 2456677777777776 444
Q ss_pred HHHHHhCCcHHHHHHHHhcC-------CH--HHHHHHHHHHHHHhCC-hhHHHHHHhc-CCHHHHHHHHccCCHHHHHHH
Q 008585 393 QEVLISLGFFPRLVHVLKAG-------SL--GAQQAAASALCRVCTS-AEMKKLVGEA-GCTPLLIKLLEAKPNSVREVA 461 (560)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL~~~-------~~--~v~~~A~~aL~~La~~-~~~~~~i~~~-g~i~~Lv~ll~s~~~~v~~~A 461 (560)
++-+...--++.++.-..+. +. +.-+.+..++..+-++ +..--.-.+. .+++.|+..+..+++++|...
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 43332222255555443322 22 3455666677666554 3222111122 568899999999999999999
Q ss_pred HHHHHHhcC
Q 008585 462 AQAISSLVT 470 (560)
Q Consensus 462 ~~aL~~L~~ 470 (560)
...+..+..
T Consensus 261 ldll~dllr 269 (371)
T PF14664_consen 261 LDLLFDLLR 269 (371)
T ss_pred HHHHHHHHC
Confidence 999999984
No 81
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=2.4e-05 Score=79.68 Aligned_cols=270 Identities=17% Similarity=0.162 Sum_probs=177.4
Q ss_pred HHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh
Q 008585 190 LAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA 268 (560)
Q Consensus 190 ~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 268 (560)
..+.+...+++|+++|+.++..+.--+...++++.-. +..+..+.+.|.+..++.++.+.+...|....|.++++..+.
T Consensus 425 TgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 425 TGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 3445667899999999997766666677777777654 457889999999999999999999999999999999997764
Q ss_pred hh--HHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC----chhHHHHHhcC----cHHHHHHHhhcCCchhHHH
Q 008585 269 EM--ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV----PEVRQMLAEEG----IVSVMIKLLDCGILLGSKE 338 (560)
Q Consensus 269 ~~--~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~----~~~~~~i~e~g----~v~~L~~lL~~~~~~~v~~ 338 (560)
++ +-.+.+.-|+..+++++.++...++..+...|+|+..+ ++.+..+.... ....+++-++..++..+++
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 33 55777888999999999999999999999999999752 23333333322 3344555556666644444
Q ss_pred HHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhccC--------C-----ccHHHHHHHHHHhhccccHHHHHhCCcHHH
Q 008585 339 YAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--------P-----LPQESAVGALRNLVGSVSQEVLISLGFFPR 404 (560)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--------~-----~~~~~a~~~L~nla~~~~~~~l~~~~~i~~ 404 (560)
.+-.|.+++..++..+..+.+ ...+..+..++.. | .+.-+-.....++..+ .+...+
T Consensus 585 -~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~--------~d~f~r 655 (743)
T COG5369 585 -GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN--------SDKFKR 655 (743)
T ss_pred -hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccc--------cccccc
Confidence 477788888878887777664 4455555555532 1 0111111222222210 011111
Q ss_pred HHH------HHhc----CCHHHHHHHHHHHHHHhCC----------hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHH
Q 008585 405 LVH------VLKA----GSLGAQQAAASALCRVCTS----------AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA 464 (560)
Q Consensus 405 Lv~------lL~~----~~~~v~~~A~~aL~~La~~----------~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~a 464 (560)
++. ..+. ++.+.-.+-.|.+.|+.-. .+-.+.+.+.|.-+.|+++-...++.+|+.+-.+
T Consensus 656 ~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~ta 735 (743)
T COG5369 656 LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTA 735 (743)
T ss_pred ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHH
Confidence 111 1121 2355666667776666422 1334455556666666665566777999999999
Q ss_pred HHHh
Q 008585 465 ISSL 468 (560)
Q Consensus 465 L~~L 468 (560)
|.++
T Consensus 736 L~~l 739 (743)
T COG5369 736 LENL 739 (743)
T ss_pred HHhh
Confidence 9887
No 82
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.00023 Score=77.94 Aligned_cols=217 Identities=14% Similarity=0.196 Sum_probs=166.0
Q ss_pred HHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh-hCChhhHHHHHhCCChHHHHHHhcc--
Q 008585 214 EKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQT-- 289 (560)
Q Consensus 214 ~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~ll~~-- 289 (560)
..|+..|+.+-.-.. ....-..-|++|.++++|++.-.+++-.-+-+..++ +.++.++..+++.+|-...+..+..
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~ 567 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ 567 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence 344444444444444 445556789999999999999888888777777776 6678888899998888888888865
Q ss_pred -CChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHH
Q 008585 290 -GDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSL 367 (560)
Q Consensus 290 -~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L 367 (560)
-+++-|..|+.+|..+.. .+-.++...+.+.+...+..++++...-.+..++-||+.|-.+.+..|-.=.+.++.+.|
T Consensus 568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL 647 (1387)
T KOG1517|consen 568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKL 647 (1387)
T ss_pred CCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHH
Confidence 245889999999999986 456677788889999999999986322689999999999999888887777788999999
Q ss_pred HHhccC--CccHHHHHHHHHHhhcc------ccHHH-----------HHhCCcHH----HHHHHHhcCCHHHHHHHHHHH
Q 008585 368 LAYLDG--PLPQESAVGALRNLVGS------VSQEV-----------LISLGFFP----RLVHVLKAGSLGAQQAAASAL 424 (560)
Q Consensus 368 ~~ll~~--~~~~~~a~~~L~nla~~------~~~~~-----------l~~~~~i~----~Lv~lL~~~~~~v~~~A~~aL 424 (560)
...+.+ +++|..|+.+|+.+... +.... ...+..+. .++.+++.+++-++.+.+.+|
T Consensus 648 ~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~l 727 (1387)
T KOG1517|consen 648 ILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVAL 727 (1387)
T ss_pred HHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHH
Confidence 999976 78999999999998761 11111 11122222 667777888999999999999
Q ss_pred HHHhCC
Q 008585 425 CRVCTS 430 (560)
Q Consensus 425 ~~La~~ 430 (560)
..++..
T Consensus 728 s~~~~g 733 (1387)
T KOG1517|consen 728 SHFVVG 733 (1387)
T ss_pred HHHHHh
Confidence 988744
No 83
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0036 Score=62.85 Aligned_cols=254 Identities=19% Similarity=0.168 Sum_probs=182.0
Q ss_pred HHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC------hhhH----HHHHhCCChHHHH
Q 008585 215 KTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS------AEMA----RAIVGHGGVRPLI 284 (560)
Q Consensus 215 ~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~------~~~~----~~l~~~g~i~~Lv 284 (560)
..+.-+..+|..|+.-..+++.++++.|+.+|...+.++...+...|..|+.. .+.+ .++++.++++.|+
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 34556677888888888999999999999999999999999999999999752 1222 4566788888888
Q ss_pred HHhccCC------hHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhh-cCCchhHHHHHHHHHHHHccCChhHHH
Q 008585 285 EICQTGD------SVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRR 356 (560)
Q Consensus 285 ~ll~~~~------~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~-~~~~~~v~~~a~~~L~~La~~~~~~~~ 356 (560)
.-+..-+ -.....+...+-|+.. .++++..+++.|.+..|+.-+. .......+.+|.++|.-+-..+..++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 8775322 2345677888889886 5689999999999888887444 323236788999999999887777777
Q ss_pred HHHhCCCHHHHHHhcc-----CC---ccHHHH---HHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 008585 357 SVVSEGGIRSLLAYLD-----GP---LPQESA---VGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL 424 (560)
Q Consensus 357 ~i~~~g~l~~L~~ll~-----~~---~~~~~a---~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL 424 (560)
......|+..+++-+. +| +-++.. ..+|+.+.. +.+++.+....++....-+++. ....+..+..+|
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 7778889999988773 22 234444 444444444 6788888877777766666665 444566677788
Q ss_pred HHHhCC---hhHHHHHHhcCCHHHHHHHHc-c---------CCHHHHHHHHHHHHHhc
Q 008585 425 CRVCTS---AEMKKLVGEAGCTPLLIKLLE-A---------KPNSVREVAAQAISSLV 469 (560)
Q Consensus 425 ~~La~~---~~~~~~i~~~g~i~~Lv~ll~-s---------~~~~v~~~A~~aL~~L~ 469 (560)
-....+ .+++..+++.+|+..+..+.. . ...+.-+..+..|+++.
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~ 399 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL 399 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 776655 367888888877777776654 1 11234455666666665
No 84
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.0019 Score=66.77 Aligned_cols=303 Identities=15% Similarity=0.128 Sum_probs=183.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCCh
Q 008585 203 QLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGV 280 (560)
Q Consensus 203 ~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i 280 (560)
+-+++++..-++.|+.+++.+-..+. ++..++. ..+|.+...+.+....++..++||+..++.+- ...+-..|-+
T Consensus 373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl 449 (858)
T COG5215 373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCGHL 449 (858)
T ss_pred HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCccccc
Confidence 44667789999999999999987664 5666654 47899999999888889999999999997531 1222223333
Q ss_pred HHHHHHhc---cCChHHHHHHHHHHHHhcCC-chh----HHHHHh--cCcHHHHHHHhh--cCCchhHHHHHHHHHHHHc
Q 008585 281 RPLIEICQ---TGDSVSQAAAACTLKNISAV-PEV----RQMLAE--EGIVSVMIKLLD--CGILLGSKEYAAECLQNLT 348 (560)
Q Consensus 281 ~~Lv~ll~---~~~~~~~~~a~~aL~nLa~~-~~~----~~~i~e--~g~v~~L~~lL~--~~~~~~v~~~a~~~L~~La 348 (560)
+..+..+- ...|....+++|...|+..+ ++. -..+.. ..++..|++--+ ..+. ..|..+..+|+.+.
T Consensus 450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~-n~R~s~fsaLgtli 528 (858)
T COG5215 450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNES-NLRVSLFSALGTLI 528 (858)
T ss_pred cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHH
Confidence 43333332 14677888999999998752 111 111111 123333333322 1222 56777777777665
Q ss_pred cCCh-hHHHHHHh---------CCCHHHHHHhccC------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHh
Q 008585 349 ASNE-NLRRSVVS---------EGGIRSLLAYLDG------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLK 410 (560)
Q Consensus 349 ~~~~-~~~~~i~~---------~g~l~~L~~ll~~------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~ 410 (560)
...+ .....+.. ...+..+-+.+.- .+++.+-+++|..+.+ ....+. ++...+..+++.|+
T Consensus 529 ~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~le 607 (858)
T COG5215 529 LICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILE 607 (858)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHh
Confidence 5222 22222211 0012222222211 2345566666666665 111111 23346788888998
Q ss_pred cCC-HHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHH
Q 008585 411 AGS-LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNL 488 (560)
Q Consensus 411 ~~~-~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~L 488 (560)
+.+ ..+-.....++++|+.+-+-+-.-.-..++|.|.+-+...+..+...|......|+.. ..+...+ .+..+..|
T Consensus 608 s~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~L 685 (858)
T COG5215 608 STKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSL 685 (858)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHH
Confidence 864 5566778889999987633332222367899999999877777889999999999832 2222222 23456899
Q ss_pred HhccCCC-CchhhHHHHHHHHHHhC
Q 008585 489 VQLLDPS-PQNTAKKYAVACLASLS 512 (560)
Q Consensus 489 v~lL~~~-~~~~~~~~a~~~L~~L~ 512 (560)
+|.|.++ .+..+|-..++++..++
T Consensus 686 vQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 686 VQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred HHHhcChhhccccchHHHHHHHHHH
Confidence 9999987 33457777888887665
No 85
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0005 Score=73.59 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=115.3
Q ss_pred hhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchH
Q 008585 151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE 230 (560)
Q Consensus 151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~ 230 (560)
++-...++.+...++.|.+.|.-+--.+.+.+...|... .+.+..++.=.+++++.+|..|++.++.+.-..-
T Consensus 46 DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i-- 118 (734)
T KOG1061|consen 46 DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKI-- 118 (734)
T ss_pred chHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHH--
Confidence 345568889999999999988888888888888777432 2457777777777889999999988877654321
Q ss_pred HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
..-.+.++.+.++++++.+|..++.+..++-. ...+.....|.++.|-.++.+.+|.+...|..+|..+..
T Consensus 119 ----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 119 ----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred ----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 12257899999999999999999999988843 445566678999999999999999999999999999874
No 86
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0082 Score=63.63 Aligned_cols=351 Identities=15% Similarity=0.135 Sum_probs=199.8
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCch
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSC 229 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~ 229 (560)
++..+..+..-|.+.++-...-|+..+.++-. .+++..+. ..++ ++|-+++ +-++..|+-+|..|-...+
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp- 180 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP- 180 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc-
Confidence 34445555555666666666666666666532 22222221 2233 5565554 6677777777766655433
Q ss_pred HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hh-hHHHHHhCCChHHHHHHhcc-------------CChHH
Q 008585 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AE-MARAIVGHGGVRPLIEICQT-------------GDSVS 294 (560)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~-~~~~l~~~g~i~~Lv~ll~~-------------~~~~~ 294 (560)
+.+-..+-...++.+|.+.+..+...+...+..|+.. ++ .+..+ .-++..|..++.. +.|=+
T Consensus 181 -Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~--~~avs~L~riv~~~~t~~qdYTyy~vP~PWL 257 (938)
T KOG1077|consen 181 -DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL--PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWL 257 (938)
T ss_pred -cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH--HHHHHHHHHHHhhcccchhhceeecCCChHH
Confidence 1111224678899999998888878888888888664 32 22222 1223333333322 23556
Q ss_pred HHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCc-hhHH-----HHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585 295 QAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGIL-LGSK-----EYAAECLQNLTASNENLRRSVVSEGGIRS 366 (560)
Q Consensus 295 ~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~-~~v~-----~~a~~~L~~La~~~~~~~~~i~~~g~l~~ 366 (560)
+...++.|-+.-. ++..+..+.+ ++..++...+.... ..++ ...+.-.-+++.+-+.-.+.+.+ .+..
T Consensus 258 ~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~ 333 (938)
T KOG1077|consen 258 QVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQ 333 (938)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHH
Confidence 7777777777743 3345555443 33444433332110 1121 11222223333322221223332 3667
Q ss_pred HHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCC
Q 008585 367 LLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTSAEMKKLVGEAGC 442 (560)
Q Consensus 367 L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~ 442 (560)
|-+++.+ +.+|.-++..+..|+. ....+.+... .+.++..|+ ..|..+++.|+..|..||.- ++.+.+
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~I----- 405 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQI----- 405 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHH-----
Confidence 7777766 6788889999988888 3444544433 888999998 68999999999999999864 344444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcC-CChhh-------HHH------hhhCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585 443 TPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNC-------REV------KRDDKSVPNLVQLLDPSPQNTAKKYAVACL 508 (560)
Q Consensus 443 i~~Lv~ll~s~~~~v~~~A~~aL~~L~~-~~~~~-------~~~------~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L 508 (560)
+..|++-+.+.+..+|+.-.-=.+-|+. ...+- -.+ ..+++..-+++|..-.+ ++++.|+..-+
T Consensus 406 V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn--edlq~yaak~~ 483 (938)
T KOG1077|consen 406 VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN--EDLQGYAAKRL 483 (938)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc--hhhhHHHHHHH
Confidence 4556667766777777654444444441 11110 000 11233344555555543 35788888888
Q ss_pred HHhCCChhhHHHHHHcChh
Q 008585 509 ASLSPSKKCKKLMISYGAI 527 (560)
Q Consensus 509 ~~L~~~~~~r~~i~~~g~i 527 (560)
...-..+.+++.|++.|+.
T Consensus 484 fe~Lq~~a~hE~mVKvggy 502 (938)
T KOG1077|consen 484 FEYLQKPACHENMVKVGGY 502 (938)
T ss_pred HHHHhhhHHHHHHHHhhhh
Confidence 8777788899999887764
No 87
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.88 E-value=0.0003 Score=72.88 Aligned_cols=277 Identities=18% Similarity=0.155 Sum_probs=174.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHH-
Q 008585 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR- 272 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~- 272 (560)
.|..++.+|++..+.+|++|+...+.|+.--. --+.+...| ..|..-|....+++.-....+++.+........
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 35667788999999999999999988875321 112333333 235666777788888877777777754322211
Q ss_pred HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-h---hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (560)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~---~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La 348 (560)
+---.|.+|.|..+|++....++.+....+..++.+. + .++.| .+---|+..|++-+. +++.+|...++.++
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nK-eiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNK-EIRRNATETFGCIS 758 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhH-HHHHhhhhhhhhHH
Confidence 1113578899999999999999999998888888633 2 33333 234456777777775 89999999999887
Q ss_pred cCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 349 ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 349 ~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
..- |--+.|..++++-++++.-.++-..++-.-..+.-.-..++|.|+.--..++..||.-.+.+++.+-
T Consensus 759 ~ai----------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 759 RAI----------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred hhc----------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 521 1112233344443444333222222221000000001234555555555677899999999999887
Q ss_pred CC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC
Q 008585 429 TS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS 495 (560)
Q Consensus 429 ~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~ 495 (560)
.. ...++++ .-..|.|-+.+...++.-|..|...+.+|+.+.+..-. .+..-+|+.+|-++
T Consensus 829 eyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~----eda~IHLlNllwpN 891 (975)
T COG5181 829 EYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD----EDAAIHLLNLLWPN 891 (975)
T ss_pred HHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc----HHHHHHHHHHhhhh
Confidence 54 3444554 34578888888889999999999999999977544221 12334555555544
No 88
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.87 E-value=2.2e-05 Score=52.74 Aligned_cols=41 Identities=39% Similarity=0.570 Sum_probs=38.2
Q ss_pred ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
+++++..+++.|+++.|+.+++++++.++..|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 89
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.87 E-value=0.004 Score=63.41 Aligned_cols=245 Identities=26% Similarity=0.276 Sum_probs=170.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
.+..++..+.+.+...+..+...+..+- ....++.+..++.+.++.+|..|+.+|+.+...
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------- 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP-------- 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence 4677888888888888888887754432 224689999999999999999999988876543
Q ss_pred hCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCCh------------HHHHHHHHH
Q 008585 235 SEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS------------VSQAAAACT 301 (560)
Q Consensus 235 ~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~------------~~~~~a~~a 301 (560)
..++.++..+. +.+..+|..++++|..+-.. ..+.+++..+.+... .++..+..+
T Consensus 105 --~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 105 --EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred --hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 35899999999 58999999999999998431 225677777776542 345555555
Q ss_pred HHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHH
Q 008585 302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES 379 (560)
Q Consensus 302 L~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~ 379 (560)
|..+- +...++.+...+.+... .++..+..+|+.+...+. .....+...+.+ ..++..
T Consensus 173 l~~~~----------~~~~~~~l~~~l~~~~~-~vr~~Aa~aL~~~~~~~~---------~~~~~l~~~~~~~~~~vr~~ 232 (335)
T COG1413 173 LGELG----------DPEAIPLLIELLEDEDA-DVRRAAASALGQLGSENV---------EAADLLVKALSDESLEVRKA 232 (335)
T ss_pred HHHcC----------ChhhhHHHHHHHhCchH-HHHHHHHHHHHHhhcchh---------hHHHHHHHHhcCCCHHHHHH
Confidence 54443 34578888899988886 899999999999887641 224556666655 345666
Q ss_pred HHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHH
Q 008585 380 AVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459 (560)
Q Consensus 380 a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~ 459 (560)
++..++.+-. ...+..+...+...+..+...+...+...-. ......+...+......++.
T Consensus 233 ~~~~l~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~ 293 (335)
T COG1413 233 ALLALGEIGD---------EEAVDALAKALEDEDVILALLAAAALGALDL----------AEAALPLLLLLIDEANAVRL 293 (335)
T ss_pred HHHHhcccCc---------chhHHHHHHHHhccchHHHHHHHHHhcccCc----------hhhHHHHHHHhhcchhhHHH
Confidence 6666666642 2346777888888877777666665552110 12345555566666667777
Q ss_pred HHHHHHHHhc
Q 008585 460 VAAQAISSLV 469 (560)
Q Consensus 460 ~A~~aL~~L~ 469 (560)
.+..++..+.
T Consensus 294 ~~~~~l~~~~ 303 (335)
T COG1413 294 EAALALGQIG 303 (335)
T ss_pred HHHHHHHhhc
Confidence 7777776664
No 90
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.86 E-value=0.0031 Score=68.76 Aligned_cols=335 Identities=16% Similarity=0.144 Sum_probs=183.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc--hHHHHH
Q 008585 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CENWLV 234 (560)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~ 234 (560)
+-++.+| ++.-.+..|++++..++...-..-..-....+++.+...++......+...+.++-.|..+.. .-..+.
T Consensus 614 ~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~ 691 (1233)
T KOG1824|consen 614 PILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL 691 (1233)
T ss_pred HHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3344444 566678888888888875332221112223457778888877667777777777777765432 111111
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCCh----------------------
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS---------------------- 292 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~---------------------- 292 (560)
+ -++..+-.++...+..+-+.+..+|..+...++....-...-.++.++.+++++--
T Consensus 692 e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~ 770 (1233)
T KOG1824|consen 692 E-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPD 770 (1233)
T ss_pred H-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCC
Confidence 1 23455555666777888888888888888776666555556667777777765410
Q ss_pred --------------------HHH-------HHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHH
Q 008585 293 --------------------VSQ-------AAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ 345 (560)
Q Consensus 293 --------------------~~~-------~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~ 345 (560)
.+. ..++.+|...+. ++.+.. +...+..+...+....++..|.-.|+
T Consensus 771 l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~-~~s~s~-----a~kl~~~~~s~~s~~~ikvfa~LslG 844 (1233)
T KOG1824|consen 771 LDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP-QKSKSL-----ATKLIQDLQSPKSSDSIKVFALLSLG 844 (1233)
T ss_pred ccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc-ccchhH-----HHHHHHHHhCCCCchhHHHHHHhhhh
Confidence 001 111222222221 011100 11111222222222255666666666
Q ss_pred HHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc---cccHH----HH------------------H-
Q 008585 346 NLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG---SVSQE----VL------------------I- 397 (560)
Q Consensus 346 ~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~---~~~~~----~l------------------~- 397 (560)
++-...+..-. .+.-..+++.+.+ .++...|..+|++++. +..-. .+ .
T Consensus 845 Elgr~~~~s~~----~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~ 920 (1233)
T KOG1824|consen 845 ELGRRKDLSPQ----NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVS 920 (1233)
T ss_pred hhccCCCCCcc----hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHH
Confidence 66553222110 1112234444544 3455566666666654 11100 00 0
Q ss_pred -----hCCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 008585 398 -----SLGFFPRLVHVLK----AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS 467 (560)
Q Consensus 398 -----~~~~i~~Lv~lL~----~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~ 467 (560)
-...++.+..+|- +.....+-..+.+|+.|+.. + ...+|.|-..+.++.+..|..+..+...
T Consensus 921 ~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--------esLlpkL~~~~~S~a~~~rs~vvsavKf 992 (1233)
T KOG1824|consen 921 ASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--------ESLLPKLKLLLRSEASNTRSSVVSAVKF 992 (1233)
T ss_pred hccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--------HHHHHHHHHHhcCCCcchhhhhhheeee
Confidence 0112333333332 23355666677777777643 3 2358888889999999999888888887
Q ss_pred hcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585 468 LVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515 (560)
Q Consensus 468 L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 515 (560)
...+ ++.....++ ..+...+.++++++ -.+++.++.++.+.++++
T Consensus 993 sisd~p~~id~~lk--~~ig~fl~~~~dpD-l~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 993 SISDQPQPIDPLLK--QQIGDFLKLLRDPD-LEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred eecCCCCccCHHHH--HHHHHHHHHHhCCc-hhHHHHHHHHHHHHHccC
Confidence 7754 444455554 45667777888763 458889999999888765
No 91
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.86 E-value=3.4e-05 Score=51.84 Aligned_cols=41 Identities=29% Similarity=0.452 Sum_probs=38.0
Q ss_pred ChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008585 185 DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE 225 (560)
Q Consensus 185 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~ 225 (560)
+++++..+++.|+++.|+++|+++++++++.|+++|++|+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999973
No 92
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0023 Score=64.23 Aligned_cols=231 Identities=17% Similarity=0.201 Sum_probs=170.1
Q ss_pred HHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC---------hhHHHHHHhCCCHHHHHH
Q 008585 299 ACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN---------ENLRRSVVSEGGIRSLLA 369 (560)
Q Consensus 299 ~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~---------~~~~~~i~~~g~l~~L~~ 369 (560)
..-+.-++..|+.-..+++.++|+.++.+|.+.+. ++....+..|..++..+ +..-..+++.++++.|++
T Consensus 105 IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt-DI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 105 IQEMHVLATMPDLYPILVELNAVQSLLELLGHENT-DIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc-hhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 34455677888999999999999999999999887 89999999999998621 134456667788888888
Q ss_pred hccC--------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhCC-hhHHHH
Q 008585 370 YLDG--------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTS-AEMKKL 436 (560)
Q Consensus 370 ll~~--------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~La~~-~~~~~~ 436 (560)
-++. ......++..+-|+.. ++....+.+.|.+.+|+.-+... -..-+..|...+.-+..+ .+++..
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~ 263 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKL 263 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhh
Confidence 8743 1235678888999987 66778888889999998866553 356778888999888766 558888
Q ss_pred HHhcCCHHHHHHHHc---cC------CHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHH
Q 008585 437 VGEAGCTPLLIKLLE---AK------PNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVAC 507 (560)
Q Consensus 437 i~~~g~i~~Lv~ll~---s~------~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~ 507 (560)
+..-.++..+++-+. .. ..+.-+.--.+||.+...+.|+..|+. +.++.-..-++... ...+..++.+
T Consensus 264 ~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr~K--k~sr~Salkv 340 (536)
T KOG2734|consen 264 LGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLREK--KVSRGSALKV 340 (536)
T ss_pred hcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHHHH--HHhhhhHHHH
Confidence 888888998888773 11 123556777888888889999999886 45555555555442 2356667778
Q ss_pred HHHhCCCh---hhHHHHHHcChhHHHHHh
Q 008585 508 LASLSPSK---KCKKLMISYGAIGYLKKL 533 (560)
Q Consensus 508 L~~L~~~~---~~r~~i~~~g~i~~L~~L 533 (560)
|-.....+ .+...+++-+++.++-.+
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence 87555433 466777777777776644
No 93
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.83 E-value=0.00079 Score=71.32 Aligned_cols=276 Identities=17% Similarity=0.150 Sum_probs=174.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch---HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh-HHH
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGSC---ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARA 273 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~-~~~ 273 (560)
+..++..|++.++.+|++|+..++.++.--.. .+.+...|+ .|...|....+++.-....++..+.....- +..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 44566678888999999999999999863321 223333342 466788888888887777776666432211 111
Q ss_pred HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC-ch---hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PE---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~---~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
---.+.+|.|..+|++....++.++...+..++.. ++ .++-| .+---|+++|+.-.. +++.++...++.|+.
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK-~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKK-EIRRAAVNTFGYIAK 954 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH
Confidence 11246679999999999999999999999999863 33 23333 234456677776665 899999999998875
Q ss_pred CChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585 350 SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (560)
Q Consensus 350 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~ 429 (560)
.- |--+.|..+|++-++++.-.++-..++-.-..+.-.-..++|.|++--+.++..||.-.+.+++.|-.
T Consensus 955 aI----------GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Fe 1024 (1172)
T KOG0213|consen 955 AI----------GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFE 1024 (1172)
T ss_pred hc----------CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHH
Confidence 21 11233444455544444333322222210000000012346666665566788999999999999874
Q ss_pred C--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC
Q 008585 430 S--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS 495 (560)
Q Consensus 430 ~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~ 495 (560)
. +-.++++ .-..|.|-+.+...+..-|..|+.++.+|+.+....- +.+.+.+|+.++-++
T Consensus 1025 yigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g----~eda~iHLLN~iWpN 1086 (1172)
T KOG0213|consen 1025 YIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTG----CEDALIHLLNLIWPN 1086 (1172)
T ss_pred HHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcC----cHHHHHHHHHHhhhh
Confidence 4 3345555 3458888899988989899999999999997754421 112334555555444
No 94
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.81 E-value=0.00082 Score=64.58 Aligned_cols=225 Identities=15% Similarity=0.119 Sum_probs=153.0
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCChhhHHHHH-hCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCchhHHHHHh-cCc
Q 008585 245 LVESGSTVGKEKATISLQRLSMSAEMARAIV-GHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAE-EGI 320 (560)
Q Consensus 245 lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~-~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~ 320 (560)
+++.-++-.+..|..|+.++...++.+..+. +..+-..++++++. ++.++|.+.+.++|.++.++++.+.+-. -..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333355578889999999999988887655 45566788888876 6678999999999999998887755444 446
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHccCCh-hHHHHHHhCCCHHHHHHhccC-----CccH----------HHHHH--
Q 008585 321 VSVMIKLLDCGILLGSKEYAAECLQNLTASNE-NLRRSVVSEGGIRSLLAYLDG-----PLPQ----------ESAVG-- 382 (560)
Q Consensus 321 v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~-~~~~~i~~~g~l~~L~~ll~~-----~~~~----------~~a~~-- 382 (560)
+.-++++++......+-+-++.++.|++...+ ..-....-.|-+.+-++.+.. .+.+ ++-..
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 77788888766555788889999999987432 211222223434455555532 1110 00000
Q ss_pred -----HHHHh-----hc-c---------ccHHHHHhC--CcHHHHHHHHhcCCHH-HHHHHHHHHHHHhCC-hhHHHHHH
Q 008585 383 -----ALRNL-----VG-S---------VSQEVLISL--GFFPRLVHVLKAGSLG-AQQAAASALCRVCTS-AEMKKLVG 438 (560)
Q Consensus 383 -----~L~nl-----a~-~---------~~~~~l~~~--~~i~~Lv~lL~~~~~~-v~~~A~~aL~~La~~-~~~~~~i~ 438 (560)
.+..+ +. + .+.+.+.+. ..+..|.++++..++. .-..|+.-|..+.+. |+.+..+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 11111 11 1 123334333 3577888889886654 445567777777754 99999999
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 439 EAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 439 ~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
..|+-..+++++.+++++++..|..++..+.
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999988775
No 95
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.76 E-value=0.00021 Score=75.52 Aligned_cols=258 Identities=14% Similarity=0.134 Sum_probs=162.4
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHH--HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR--AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML 315 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~--~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (560)
.+..++..|++.++.+|.+|+..+..++..-..+. .+..+-| -.|.+.+...+|++.-..+.+++.+...-+.-+..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG-vvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG-VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh-HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 35666778889999999999999999976533332 2222222 23667788889999887777777665322111111
Q ss_pred H-hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh---HHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585 316 A-EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN---LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (560)
Q Consensus 316 ~-e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~---~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~ 389 (560)
- -.+++|.|..+|++.+. .++++++..++.|+...++ .|+-+ .+--.|+.+|.. ..++..|...++.++.
T Consensus 879 pPi~dllPrltPILknrhe-KVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHE-KVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CChhhhcccchHhhhhhHH-HHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 1 15789999999999997 8999999999999985553 12111 112234555543 5788999999999986
Q ss_pred cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.-.++ .++..|++-|+..+...+....-+|+-.+.. +.. ..++|.|+.=...++..||.-.+.+|+.+.
T Consensus 955 aIGPq-----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~---c~p---FtVLPalmneYrtPe~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen 955 AIGPQ-----DVLATLLNNLKVQERQNRVCTTVAIAIVAET---CGP---FTVLPALMNEYRTPEANVQNGVLKALSFMF 1023 (1172)
T ss_pred hcCHH-----HHHHHHHhcchHHHHHhchhhhhhhhhhhhh---cCc---hhhhHHHHhhccCchhHHHHhHHHHHHHHH
Confidence 43332 2355566656555544444444444444321 111 246788887777888889999999999997
Q ss_pred CCChh-hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCC
Q 008585 470 TLPQN-CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (560)
Q Consensus 470 ~~~~~-~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~ 514 (560)
..-.+ .+..+- -..+.|-..|-+.+ ...+..+..++.+|+-+
T Consensus 1024 eyigemskdYiy--av~PlleDAlmDrD-~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1024 EYIGEMSKDYIY--AVTPLLEDALMDRD-LVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHhhhHHH--HhhHHHHHhhcccc-HHHHHHHHHHHHHHhcC
Confidence 43322 222221 22344444454442 24566777788777743
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.74 E-value=0.0018 Score=65.97 Aligned_cols=184 Identities=25% Similarity=0.288 Sum_probs=141.4
Q ss_pred CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHH
Q 008585 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA 316 (560)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~ 316 (560)
..++.+++.+.+.+..++..++..+..+.. .-.++.+..++.+.++.+|..++.+|.++-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 468889999999989999999888666522 2345889999999999999999998877643
Q ss_pred hcCcHHHHHHHhhc-CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc--------------cHHHHH
Q 008585 317 EEGIVSVMIKLLDC-GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--------------PQESAV 381 (560)
Q Consensus 317 e~g~v~~L~~lL~~-~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~--------------~~~~a~ 381 (560)
...++.+++++.+ .+. .++..+.++|+.+-.... +..++..+.++. ++..+.
T Consensus 104 -~~a~~~li~~l~~d~~~-~vR~~aa~aL~~~~~~~a-----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 104 -PEAVPPLVELLENDENE-GVRAAAARALGKLGDERA-----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred -hhHHHHHHHHHHcCCcH-hHHHHHHHHHHhcCchhh-----------hHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 3478899999985 554 899999999998864321 566666665532 344455
Q ss_pred HHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585 382 GALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (560)
Q Consensus 382 ~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A 461 (560)
..+..+- ....++.+...+...+..++..|+.+|+.+.... ....+.+...+...+..+|..+
T Consensus 171 ~~l~~~~---------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 171 EALGELG---------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHHcC---------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 5554443 3456888999999999999999999999998654 2456788888888999999999
Q ss_pred HHHHHHhc
Q 008585 462 AQAISSLV 469 (560)
Q Consensus 462 ~~aL~~L~ 469 (560)
+.+|..+-
T Consensus 234 ~~~l~~~~ 241 (335)
T COG1413 234 LLALGEIG 241 (335)
T ss_pred HHHhcccC
Confidence 99988885
No 97
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.73 E-value=0.015 Score=63.61 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=101.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCc--hhHHHHHh----------------------------cCcHHHHHHHh---
Q 008585 282 PLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAE----------------------------EGIVSVMIKLL--- 328 (560)
Q Consensus 282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e----------------------------~g~v~~L~~lL--- 328 (560)
.+++.+.+++.+++.+|..+|++++... ..-..+.+ ...++-+..+|
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~ 940 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKH 940 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Confidence 4555666677899999999999998632 22222111 00111111111
Q ss_pred -hcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHH
Q 008585 329 -DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPR 404 (560)
Q Consensus 329 -~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~ 404 (560)
+..++ ..|.-.++||+.|+..+++. .++.|-..+.+ +..+..++.++.-... ...+-.......+..
T Consensus 941 cE~~ee-gtR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~ 1011 (1233)
T KOG1824|consen 941 CECAEE-GTRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGD 1011 (1233)
T ss_pred cccchh-hhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHH
Confidence 12222 45666667777776655542 15666666655 4455555555554443 111212234567889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHc----------------------cCCHHHHHHH
Q 008585 405 LVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLE----------------------AKPNSVREVA 461 (560)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~----------------------s~~~~v~~~A 461 (560)
++.++++++.+|++.|..++...+.+ +..-+ +..|.|+.++. ...-++|..|
T Consensus 1012 fl~~~~dpDl~VrrvaLvv~nSaahNKpslIr-----DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaa 1086 (1233)
T KOG1824|consen 1012 FLKLLRDPDLEVRRVALVVLNSAAHNKPSLIR-----DLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAA 1086 (1233)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHH
Confidence 99999999999999999999998866 33222 22333333332 1224578888
Q ss_pred HHHHHHhc
Q 008585 462 AQAISSLV 469 (560)
Q Consensus 462 ~~aL~~L~ 469 (560)
-+++..|.
T Consensus 1087 FEcmytLL 1094 (1233)
T KOG1824|consen 1087 FECMYTLL 1094 (1233)
T ss_pred HHHHHHHH
Confidence 88888886
No 98
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.71 E-value=0.00066 Score=64.98 Aligned_cols=184 Identities=17% Similarity=0.188 Sum_probs=116.9
Q ss_pred ccCCHHHHHHHHHHHHHHHhhC--hHHHHHHhhC--CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCH
Q 008585 164 QIGHLEAKHKALDSLVEAMKED--EKNVLAVMGR--SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL 239 (560)
Q Consensus 164 ~~~~~~~~~~A~~~L~~L~~~~--~~~~~~i~~~--g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i 239 (560)
...+-+.+.+|+..|..++.++ ......+.+. ..+..+...+++....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5677889999999999999877 2222222211 44567777777767788899999999998754322111123478
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhCChh-hHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc---h-hHH
Q 008585 240 PPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP---E-VRQ 313 (560)
Q Consensus 240 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~---~-~~~ 313 (560)
|.|++.+.++...++..|..+|..+...-. ....+ ++.+...+.+.+|.+|..++..+..+.. .+ . ...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 999999999999999999999999988644 22221 2666777888999999999999988864 22 1 111
Q ss_pred HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (560)
Q Consensus 314 ~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~ 353 (560)
...-..+++.+.+.+.++++ ++|..|-.++..+....+.
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~-~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADP-EVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-H-HHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHCCH
Confidence 11114578888999999997 8999999999998764443
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0035 Score=65.88 Aligned_cols=246 Identities=17% Similarity=0.124 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCC
Q 008585 212 IREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGD 291 (560)
Q Consensus 212 v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~ 291 (560)
.+-.+......++..+..-... .+++...++.+..+.+..++..|+..|-.|+....-..... ...++++++.+
T Consensus 174 ~~~~~~~~~~~lg~~~ss~~~d-~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y-----~~A~~~lsD~~ 247 (823)
T KOG2259|consen 174 NRLLLYCFHLPLGVSPSSLTHD-REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACY-----SRAVKHLSDDY 247 (823)
T ss_pred chHHHHHHhhhcccCCCccccc-HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHH-----HHHHHHhcchH
Confidence 3444445555555544311110 11233347888888899999999999888876433333333 66788999999
Q ss_pred hHHHHHHHHHHHHhcC-C--c----hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585 292 SVSQAAAACTLKNISA-V--P----EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGI 364 (560)
Q Consensus 292 ~~~~~~a~~aL~nLa~-~--~----~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l 364 (560)
..+|..|...++-.+. . + .....+.+ .++..+...+.+.+. .+|..|..+|+.+..-+++.-..-.+..++
T Consensus 248 e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl-~VRV~AaK~lG~~~~vSee~i~QTLdKKlm 325 (823)
T KOG2259|consen 248 EDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSL-SVRVEAAKALGEFEQVSEEIIQQTLDKKLM 325 (823)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCce-eeeehHHHHhchHHHhHHHHHHHHHHHHHh
Confidence 9999988766665442 1 1 22333333 367778888888886 899999999998877555433222222111
Q ss_pred HHHHHhccCCccHHHHHHHHHHhhc-------------cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-
Q 008585 365 RSLLAYLDGPLPQESAVGALRNLVG-------------SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS- 430 (560)
Q Consensus 365 ~~L~~ll~~~~~~~~a~~~L~nla~-------------~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~- 430 (560)
..+-+-= ...-+......=+.+++ ++...-++..|.-..+++-|.+.-.+|++.|+..++.|+.+
T Consensus 326 s~lRRkr-~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss 404 (823)
T KOG2259|consen 326 SRLRRKR-TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS 404 (823)
T ss_pred hhhhhhh-hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC
Confidence 1000000 00000011111111111 01112234455556666666655566666666666666643
Q ss_pred hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 431 AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 431 ~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
|.+...- +..|++++......+|..|..+|..|+.+
T Consensus 405 P~FA~~a-----ldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 405 PGFAVRA-----LDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred CCcHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4443322 55566666666566666666666666533
No 100
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.0012 Score=72.66 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHH-hcCCchHHHHHhCCCHHHHHHhhhc
Q 008585 170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSL-AESGSCENWLVSEGVLPPLIRLVES 248 (560)
Q Consensus 170 ~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~lL~~ 248 (560)
-|..|+.-|..++.-.+=.+......|..|..++||+++..+++..-+-+-..+ +-++.+...+++.++-..++++|.+
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 467788888888876665566666789999999999999989887766666555 5566799999999999999999988
Q ss_pred C---CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccC-ChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHH
Q 008585 249 G---STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISA-VPEVRQMLAEEGIVS 322 (560)
Q Consensus 249 ~---~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~ 322 (560)
+ +++-|..++-+|..+..+ +-.+....+.+.+...++.+.++ .|-++...+-+|+.|=. +++.|-.-.+.++..
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 3 567888999999999887 44566777888888888888884 68899999999999964 566776667789999
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585 323 VMIKLLDCGILLGSKEYAAECLQNLTAS 350 (560)
Q Consensus 323 ~L~~lL~~~~~~~v~~~a~~~L~~La~~ 350 (560)
.|+.+|.++.+ +||..|+.+|+.+...
T Consensus 646 kL~~~LsD~vp-EVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 646 KLILLLSDPVP-EVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHhcCccH-HHHHHHHHHHHHHhcc
Confidence 99999999887 8999999999999874
No 101
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.043 Score=58.64 Aligned_cols=299 Identities=12% Similarity=0.149 Sum_probs=189.4
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (560)
.+...++++..|.+.-+-.|.+|.-.+..+.-.-|+..+ ...+.|.+=|..+|+.++..|+.+++.|++.++ +-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 456678899999999999999999988888765554322 478999999999999999999999999998665 22
Q ss_pred HHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHH--h
Q 008585 231 NWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKN--I 305 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~n--L 305 (560)
- ..-|.+.++|.+. +..+.........+|+-- |--.. ..+++|.+++.+..- .+...+..++.. +
T Consensus 217 L-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 217 L-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred c-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 1 2457788888765 555677777788888653 22222 335888888876432 233444444332 2
Q ss_pred cC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHH
Q 008585 306 SA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVG 382 (560)
Q Consensus 306 a~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~ 382 (560)
+. .+++-..+ .-++.-|-.++.+.+. .+++-++-+++.+...++..-+.. -+.+++.|++ +.++..|+.
T Consensus 287 s~g~~d~~asi--qLCvqKLr~fiedsDq-NLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 287 SSGMSDHSASI--QLCVQKLRIFIEDSDQ-NLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALD 358 (877)
T ss_pred ccCCCCcHHHH--HHHHHHHhhhhhcCCc-cHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHH
Confidence 22 11111111 1256667777888886 899999999999998666432211 4567888876 778999999
Q ss_pred HHHHhhccccHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhCChhHHHHHHhc-CCHHHHHHHHccCCHHHHHH
Q 008585 383 ALRNLVGSVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTSAEMKKLVGEA-GCTPLLIKLLEAKPNSVREV 460 (560)
Q Consensus 383 ~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~La~~~~~~~~i~~~-g~i~~Lv~ll~s~~~~v~~~ 460 (560)
.+.-+....+..++ +..|+..+... ....+-..+.-+-.+|....+ .++.+. =.+..|+++..-...+.-..
T Consensus 359 Ll~gmVskkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY-~~ItdFEWYlsVlveLa~l~~~~~G~~ 432 (877)
T KOG1059|consen 359 LLYGMVSKKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNY-QYITDFEWYLSVLVELARLEGTRHGSL 432 (877)
T ss_pred HHHHHhhhhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHhccccchhhH
Confidence 99999875444333 44555544333 334555544444445433222 122222 24566677766444433344
Q ss_pred HHHHHHHhcCCChhhHHHh
Q 008585 461 AAQAISSLVTLPQNCREVK 479 (560)
Q Consensus 461 A~~aL~~L~~~~~~~~~~~ 479 (560)
..+-+.+++...+..+.|.
T Consensus 433 I~eQi~Dv~iRV~~iR~fs 451 (877)
T KOG1059|consen 433 IAEQIIDVAIRVPSIRPFS 451 (877)
T ss_pred HHHHHHHHheechhhhHhH
Confidence 4555666765555555544
No 102
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.69 E-value=0.00012 Score=58.45 Aligned_cols=87 Identities=28% Similarity=0.345 Sum_probs=70.2
Q ss_pred HHHHHHhh-hcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585 239 LPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (560)
Q Consensus 239 i~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (560)
|+.|++.| +++++.+|..++.+|.++- .+ ..++.|+.+++++++.+|..++.+|..+. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57899988 7889999999999999652 11 23589999999999999999999998773 3
Q ss_pred cCcHHHHHHHhhcCCchhHHHHHHHHHH
Q 008585 318 EGIVSVMIKLLDCGILLGSKEYAAECLQ 345 (560)
Q Consensus 318 ~g~v~~L~~lL~~~~~~~v~~~a~~~L~ 345 (560)
..+++.|.+++.++++..++..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4589999999988766467888888874
No 103
>PF05536 Neurochondrin: Neurochondrin
Probab=97.67 E-value=0.0045 Score=66.68 Aligned_cols=229 Identities=17% Similarity=0.214 Sum_probs=158.1
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh----HHHHHhCCChHHHHHHhccC-------ChHHHHHHHHHHHHhc
Q 008585 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEM----ARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKNIS 306 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~----~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~nLa 306 (560)
.+...+++|+..+..-|-.+...+.++..+.+. ++.+.+.=|.+-|-++|+++ ....+.-|..+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 466778889888866677777888888665332 34577777788888999872 2456778899999999
Q ss_pred CCchhH--HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHH
Q 008585 307 AVPEVR--QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGA 383 (560)
Q Consensus 307 ~~~~~~--~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~ 383 (560)
..|+.. ..++ +-||.+++.+.+.++..+...++.+|..++.+.+ -++.+++.|+++.|.+.+.+ +...+.++.+
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPNQSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHhCcchHHHHHHH
Confidence 887765 4444 4799999999877655789999999999996544 47889999999999999866 6788999999
Q ss_pred HHHhhccccHHHHHh-----CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhH--HHHHHh----cCCHHHHHHHHcc
Q 008585 384 LRNLVGSVSQEVLIS-----LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEM--KKLVGE----AGCTPLLIKLLEA 452 (560)
Q Consensus 384 L~nla~~~~~~~l~~-----~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~--~~~i~~----~g~i~~Lv~ll~s 452 (560)
+.+++.....+.+.+ ..+++.+-..........+...+..|..+-...+. ...... ......+..++++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 999987222111111 12344455555555566677778888887644321 112222 2234455566665
Q ss_pred C-CHHHHHHHHHHHHHhc
Q 008585 453 K-PNSVREVAAQAISSLV 469 (560)
Q Consensus 453 ~-~~~v~~~A~~aL~~L~ 469 (560)
+ .+.-|..+..+...|.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 4 4556677777666665
No 104
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.014 Score=61.31 Aligned_cols=335 Identities=17% Similarity=0.127 Sum_probs=203.5
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
....+..++..+.+..+.+++.....|..+....... ...-..+.+.++++.++...+..++..+..+..... -.
T Consensus 94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~----~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~-i~ 168 (569)
T KOG1242|consen 94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL----SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG-IE 168 (569)
T ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc----CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH-Hh
Confidence 3456788888888888888877777776664321111 111246678888888888889999999888876643 24
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHH-HHHHHHHHHhhCChhhHHHHHhCCChHHHHHH---hccCChHHHHHHHHHHHHhcC
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGK-EKATISLQRLSMSAEMARAIVGHGGVRPLIEI---CQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~-~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~l---l~~~~~~~~~~a~~aL~nLa~ 307 (560)
.+.+.+.+..+.+.+++.....+ +.+..+......+-. ...+...++.+-.+ ..+..+.+|..+..+...+-.
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 45566788888888887644433 323322222221111 11122333444444 445677888777777655532
Q ss_pred -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585 308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL 384 (560)
Q Consensus 308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L 384 (560)
.+...- .-.++.++.-+....+ ..+..++..|+.++...+. +-...-...++.+.+.|-+ +.++..+..+|
T Consensus 246 ~~~~~aV----K~llpsll~~l~~~kW-rtK~aslellg~m~~~ap~-qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 246 CLSAYAV----KLLLPSLLGSLLEAKW-RTKMASLELLGAMADCAPK-QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred hcCcchh----hHhhhhhHHHHHHHhh-hhHHHHHHHHHHHHHhchH-HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence 111110 1123334433334454 6888999999999987664 3345557789999999865 78999999999
Q ss_pred HHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH--hCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHH
Q 008585 385 RNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV--CTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459 (560)
Q Consensus 385 ~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L--a~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~ 459 (560)
..++. -++.+. ..+++.|++.+.+....+.+ +...|+.= ... +..... .+|.|.+-+...+..++.
T Consensus 320 ~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 320 LKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR 390 (569)
T ss_pred HHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence 99998 444431 23678888888766533322 33333321 111 112222 367777777777788889
Q ss_pred HHHHHHHHhcCC---ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 460 VAAQAISSLVTL---PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 460 ~A~~aL~~L~~~---~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
.++....|++.- +.....++. ..++.+-..+.+. .+++|..+..+|+.+-
T Consensus 391 ~t~~IidNm~~LveDp~~lapfl~--~Llp~lk~~~~d~-~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVEDPKDLAPFLP--SLLPGLKENLDDA-VPEVRAVAARALGALL 443 (569)
T ss_pred hHHHHHHHHHHhhcCHHHHhhhHH--HHhhHHHHHhcCC-ChhHHHHHHHHHHHHH
Confidence 999999999843 333444442 3445555555554 4467777777776554
No 105
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.57 E-value=0.00019 Score=57.27 Aligned_cols=86 Identities=28% Similarity=0.440 Sum_probs=69.3
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhh
Q 008585 402 FPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480 (560)
Q Consensus 402 i~~Lv~lL-~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (560)
|+.|++.| +++++.++..++.+|+++.. ...++.|++++.++++.+|..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 57889988 77899999999999996531 245999999999999999999999999882
Q ss_pred hCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585 481 DDKSVPNLVQLLDPSPQNTAKKYAVACL 508 (560)
Q Consensus 481 ~~~~v~~Lv~lL~~~~~~~~~~~a~~~L 508 (560)
+...++.|.+++.+++...++..+..+|
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2346789999998876666787777765
No 106
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.025 Score=65.07 Aligned_cols=386 Identities=17% Similarity=0.154 Sum_probs=203.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC------CCC------cch-------hhhhhH--Hhhhhhhhh-hhchh
Q 008585 67 FSKNALCREQLQAVSKTLKEAIELAELCVKEK------YEG------KLR-------MQSDLD--ALSGKLDLN-LHDCG 124 (560)
Q Consensus 67 ~~~~~~~~~~~~~~~~~l~~~~~l~~~c~~~~------~~~------~~~-------~~s~~~--~~~~~l~~~-~~d~~ 124 (560)
+.+.|.=..++.++..|+.....-+.+-...+ ..| +|. ++||+. .+.-+|.+. -|...
T Consensus 891 lgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~ 970 (1702)
T KOG0915|consen 891 LGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNAT 970 (1702)
T ss_pred cCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhch
Confidence 44455557888888888886332221111111 112 332 444432 334444433 44555
Q ss_pred hHHhhCCCCCCCcccccCCCCCchhhhhhchHHHHHHHHc--cCCHHH-HHHHHHHHHHHHhhChHHHHHHhhCCCHHHH
Q 008585 125 LLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQ--IGHLEA-KHKALDSLVEAMKEDEKNVLAVMGRSNIAAL 201 (560)
Q Consensus 125 ~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~i~~Ll~~L~--~~~~~~-~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~L 201 (560)
|--+-|+. .++..+.. .+.+.+.-+.+.|+.+|- .-||+. ...|+..+.+.+-.+++....-.-.....-|
T Consensus 971 wnSk~GaA-fGf~~i~~-----~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 971 WNSKKGAA-FGFGAIAK-----QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhcccchh-hchHHHHH-----HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 55554443 12222211 124556677888888883 223333 5578889998887676554333333566777
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCch---HHHHHhCCCHHHHHHhhhcCCHHHHHH---HHHHHHHhhC---Chhh--
Q 008585 202 VQLLTATSPRIREKTVTVICSLAESGSC---ENWLVSEGVLPPLIRLVESGSTVGKEK---ATISLQRLSM---SAEM-- 270 (560)
Q Consensus 202 v~lL~~~~~~v~~~A~~~L~~La~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~~~~~---a~~~L~~La~---~~~~-- 270 (560)
+.-|.+....+|+.++-+|..|-...+. .+.+- .....+.+.+.+-...+|+. ++.+|.+++. +..+
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 7777788899999999999999887653 33332 24556667777666666664 5666666643 2211
Q ss_pred -HHHHHhCCChHHHHHH-hccCChHHHHHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHH
Q 008585 271 -ARAIVGHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN 346 (560)
Q Consensus 271 -~~~l~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~ 346 (560)
..++. ..++|.|++- .-+.-+++|+.+..++..|+.+. ..+..+. ..+|.|+.....-++.-+-+-++++ .|
T Consensus 1123 ~~~~~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~~ 1198 (1702)
T KOG0915|consen 1123 KGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-IN 1198 (1702)
T ss_pred cHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-hh
Confidence 11111 1223332210 01346789999999999998643 3343333 3677777776654442233334444 22
Q ss_pred Hcc-CChhHHHHHHhCC--------------------CHHHHHHhccC---CccHHHHHHHHHHhhccccHH-HHHhCCc
Q 008585 347 LTA-SNENLRRSVVSEG--------------------GIRSLLAYLDG---PLPQESAVGALRNLVGSVSQE-VLISLGF 401 (560)
Q Consensus 347 La~-~~~~~~~~i~~~g--------------------~l~~L~~ll~~---~~~~~~a~~~L~nla~~~~~~-~l~~~~~ 401 (560)
+.. .-+..|..+.+.. .++.+.+++.+ -..+..+..++.-|+..-..+ .-..-..
T Consensus 1199 ~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1199 IETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKL 1278 (1702)
T ss_pred hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHH
Confidence 211 1112222222211 13333344433 234556666666665410000 0011223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 402 FPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
+..++..+++.++.+++.-+.+.+.|+.. ++-.+.+ ++.++..+..+.+..+..++..+.+++
T Consensus 1279 l~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKL-----ie~~l~~~l~k~es~~siscatis~Ia 1343 (1702)
T KOG0915|consen 1279 LRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKL-----IETLLADLLGKDESLKSISCATISNIA 1343 (1702)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHH-----HHHHHHHHhccCCCccchhHHHHHHHH
Confidence 55666666788999999999999999854 4333333 333343343333333345555555544
No 107
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.44 E-value=0.0071 Score=63.71 Aligned_cols=254 Identities=17% Similarity=0.150 Sum_probs=164.4
Q ss_pred HHHHHHhhCChhhHHHHHhCCChHHHHHHh----------ccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHH
Q 008585 258 TISLQRLSMSAEMARAIVGHGGVRPLIEIC----------QTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIK 326 (560)
Q Consensus 258 ~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll----------~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~ 326 (560)
+.+|.-++.++.+...+....++..|..+- ...++.+...|+.+|+|+.. ++..|+.+.+.|..+.++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 456666777777777777777777777665 23578899999999999985 6789999999999999999
Q ss_pred HhhcC-----CchhHHHHHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhccC--------Cc-----------cHHHHH
Q 008585 327 LLDCG-----ILLGSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--------PL-----------PQESAV 381 (560)
Q Consensus 327 lL~~~-----~~~~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--------~~-----------~~~~a~ 381 (560)
.++.. +. ++.....+.|--++......+..+++ .+++..+...+.. .. ....++
T Consensus 82 ~Lk~~~~~~~~~-d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 82 RLKNYSDSSQPS-DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHcccccCCCh-hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 99876 44 78899999998888877777777775 5777777776632 10 134577
Q ss_pred HHHHHhhccccHHHH-HhCCcHHHHHHHHhc---------CCHHHHHHHHHHHHHHhCChhHHHHH--------------
Q 008585 382 GALRNLVGSVSQEVL-ISLGFFPRLVHVLKA---------GSLGAQQAAASALCRVCTSAEMKKLV-------------- 437 (560)
Q Consensus 382 ~~L~nla~~~~~~~l-~~~~~i~~Lv~lL~~---------~~~~v~~~A~~aL~~La~~~~~~~~i-------------- 437 (560)
+.+-|+......... .....+++++.++.. ........+..+|.|+--. ....+
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhcccCCcccccCCC
Confidence 788888762111111 123445555554432 1246677777888877311 11110
Q ss_pred HhcCCHHHHHHHHcc----C----CHHHHHHHHHHHHHhcCCChhhHHHhhh---------------CCC-hHHHHhccC
Q 008585 438 GEAGCTPLLIKLLEA----K----PNSVREVAAQAISSLVTLPQNCREVKRD---------------DKS-VPNLVQLLD 493 (560)
Q Consensus 438 ~~~g~i~~Lv~ll~s----~----~~~v~~~A~~aL~~L~~~~~~~~~~~~~---------------~~~-v~~Lv~lL~ 493 (560)
.....+..|+++++. . -.+.-...+.+|..++......+.+++. .+. -.+|++++.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 111246666666641 1 1133445566677776554444444432 233 378999998
Q ss_pred CCCchhhHHHHHHHHHHhCCCh
Q 008585 494 PSPQNTAKKYAVACLASLSPSK 515 (560)
Q Consensus 494 ~~~~~~~~~~a~~~L~~L~~~~ 515 (560)
+.. ..++..+...+..||...
T Consensus 319 ~~~-~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 319 SPD-PQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCC-chHHHHHHHHHHHHHhhh
Confidence 875 568888888888997433
No 108
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.34 E-value=0.0079 Score=63.39 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=159.2
Q ss_pred ChHHHHHHhhCCCHHHHHHhh----------cCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcC----
Q 008585 185 DEKNVLAVMGRSNIAALVQLL----------TATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESG---- 249 (560)
Q Consensus 185 ~~~~~~~i~~~g~v~~Lv~lL----------~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~---- 249 (560)
++.+...+....++..|+++- ...++.+...|+++|+|+-...+ .|..+++.|..+.+++.|+..
T Consensus 11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~ 90 (446)
T PF10165_consen 11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS 90 (446)
T ss_pred CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence 444555555555666666654 23458999999999999998776 888999999999999999987
Q ss_pred -CHHHHHHHHHHHHHhhC-ChhhHHHHH-hCCChHHHHHHhcc---------C--------ChHHHHHHHHHHHHhcCCc
Q 008585 250 -STVGKEKATISLQRLSM-SAEMARAIV-GHGGVRPLIEICQT---------G--------DSVSQAAAACTLKNISAVP 309 (560)
Q Consensus 250 -~~~~~~~a~~~L~~La~-~~~~~~~l~-~~g~i~~Lv~ll~~---------~--------~~~~~~~a~~aL~nLa~~~ 309 (560)
+.++.-...+.|.-++. ..+.+..++ +++++..++..+.. . +......++.++.|+..+.
T Consensus 91 ~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~ 170 (446)
T PF10165_consen 91 QPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY 170 (446)
T ss_pred CChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 78888889999988865 466666665 46888888877631 0 2234567888999997532
Q ss_pred hhHHHHHhcCcHHHHHHHhhc-------CC-chhHHHHHHHHHHHHccCChhH-------HHHHH----hCCCHHHHHHh
Q 008585 310 EVRQMLAEEGIVSVMIKLLDC-------GI-LLGSKEYAAECLQNLTASNENL-------RRSVV----SEGGIRSLLAY 370 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~-------~~-~~~v~~~a~~~L~~La~~~~~~-------~~~i~----~~g~l~~L~~l 370 (560)
.....-.+...++.++.++.. .. ......+++.+|.|+--..... ...+. ....+..|+.+
T Consensus 171 ~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~ 250 (446)
T PF10165_consen 171 PKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDF 250 (446)
T ss_pred CcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHH
Confidence 111111112333443333321 11 1256778888888884321111 00000 11246777777
Q ss_pred ccC----------CccHHHHHHHHHHhhc-c-ccHHHH----------------HhCCcHHHHHHHHhcCCHHHHHHHHH
Q 008585 371 LDG----------PLPQESAVGALRNLVG-S-VSQEVL----------------ISLGFFPRLVHVLKAGSLGAQQAAAS 422 (560)
Q Consensus 371 l~~----------~~~~~~a~~~L~nla~-~-~~~~~l----------------~~~~~i~~Lv~lL~~~~~~v~~~A~~ 422 (560)
|+. .....+.+.+|.+++. . ..++.+ .....-.+|++++.+..+.++..++.
T Consensus 251 Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vae 330 (446)
T PF10165_consen 251 LDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAE 330 (446)
T ss_pred HHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHH
Confidence 743 1245677777777776 2 222222 12355778999999988999999999
Q ss_pred HHHHHhCC
Q 008585 423 ALCRVCTS 430 (560)
Q Consensus 423 aL~~La~~ 430 (560)
.+..||..
T Consensus 331 llf~Lc~~ 338 (446)
T PF10165_consen 331 LLFVLCKE 338 (446)
T ss_pred HHHHHHhh
Confidence 99999843
No 109
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0011 Score=68.01 Aligned_cols=184 Identities=11% Similarity=0.015 Sum_probs=132.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCcc--HHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCC
Q 008585 338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS 413 (560)
Q Consensus 338 ~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~--~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~ 413 (560)
..++.+|..++.+-...|.-+.+..+.+.|+++|++|++ ...+...+.|+.. .+-+..+.+.++++.|+.++.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 345667777777656667667777889999999999775 4578888888887 466788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChh---hHHHhhhCC----C
Q 008585 414 LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN---CREVKRDDK----S 484 (560)
Q Consensus 414 ~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~---~~~~~~~~~----~ 484 (560)
..+|....|.++++..+ .+.+-.+...-++..++.+...+...+++...+.|.++..+... .+++.-... .
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 99999999999999865 33333444455699999999999999999999999999863222 233322111 1
Q ss_pred hHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHH
Q 008585 485 VPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMI 522 (560)
Q Consensus 485 v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~ 522 (560)
...|+..++..++- .....+.++.+++-+.+..+.++
T Consensus 567 fk~l~~k~e~~np~-~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 567 FKRLIDKYEENNPM-EILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred HHHHHHHHHhcCch-hhhhhHHHHHHHHhccchHHHHH
Confidence 24455556655332 23344667777766555444443
No 110
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.32 E-value=0.013 Score=64.61 Aligned_cols=340 Identities=14% Similarity=0.105 Sum_probs=206.3
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--chH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG--SCE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~~~ 230 (560)
....+.++.....++...+.........+...-.. .......+++...+++....+.+...+.-...++... ++.
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 34445555555566655565555555555431110 1112234777788888887888888877777776643 355
Q ss_pred HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc
Q 008585 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP 309 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~ 309 (560)
..+.....+|.+-.+..+.+..++...+.....++---..-.. -....+.++..+++..+.++......+..+-. ++
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~t--i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~ 469 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERT--ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVND 469 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcC--ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccC
Confidence 5666666788888888888888888777666665332110000 12334667778888889998888876655533 23
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHh
Q 008585 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL 387 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nl 387 (560)
...........++.+..+..+... .++....+.+..++.... ..++.....+.+...+.+ ..+++.|...+..+
T Consensus 470 v~g~~~~s~slLp~i~el~~d~~w-Rvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l 545 (759)
T KOG0211|consen 470 VIGISTVSNSLLPAIVELAEDLLW-RVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPAL 545 (759)
T ss_pred cccchhhhhhhhhhhhhhccchhH-HHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHH
Confidence 333444445677888887777665 788888888888886433 122222211222222222 45778888888777
Q ss_pred hccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 008585 388 VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS 467 (560)
Q Consensus 388 a~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~ 467 (560)
+..-+ ........++.++.+..+++...+...+.++..|+. -.-+.+.....+|.+.++.....++||..++..|..
T Consensus 546 ~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~--v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 546 VETFG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE--VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPK 622 (759)
T ss_pred HHHhC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH--HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence 76222 222234567777777777777777777777776652 122222233458999999999999999999999999
Q ss_pred hcC--CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHH
Q 008585 468 LVT--LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS 510 (560)
Q Consensus 468 L~~--~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~ 510 (560)
+.. +.+.++..+ .+.+..+-.+.+. .++-.+..++..
T Consensus 623 i~~~L~~~~~~~~v-----~pll~~L~~d~~~-dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 623 ILKLLDESVRDEEV-----LPLLETLSSDQEL-DVRYRAILAFGS 661 (759)
T ss_pred HHhhcchHHHHHHH-----HHHHHHhccCccc-chhHHHHHHHHH
Confidence 973 333333333 2555555554433 355555555443
No 111
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.047 Score=58.14 Aligned_cols=311 Identities=12% Similarity=0.118 Sum_probs=183.7
Q ss_pred hchHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChHHHHHHhhC-CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-
Q 008585 153 HGNTRELLARLQIGHL--EAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTATSPRIREKTVTVICSLAESGS- 228 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~--~~~~~A~~~L~~L~~~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~- 228 (560)
..+-.++-+.|-+++. -+|.+|+-+|..|.+.+|+ ++.. +..+.++.+|++.+..+.-.+...+..|+...+
T Consensus 145 ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD----l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 145 EAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD----LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred HHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc----ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence 3333444456666653 4588888899999887773 3333 558999999999887777778888888876543
Q ss_pred -hHHHHHhCCCHHHHHHhhhc-------------CCHHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhcc---
Q 008585 229 -CENWLVSEGVLPPLIRLVES-------------GSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQT--- 289 (560)
Q Consensus 229 -~~~~l~~~g~i~~Lv~lL~~-------------~~~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~--- 289 (560)
++..+-. .+..|.++... +.|..+...++.|...-. ++..+..+. .++..++.-.+.
T Consensus 221 ~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~ 296 (938)
T KOG1077|consen 221 SYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPK 296 (938)
T ss_pred HHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCcc
Confidence 4333211 22333322211 256777788888888733 233333332 222322222221
Q ss_pred -CCh---HHHHHHHHHHHHhcCC-chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585 290 -GDS---VSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGI 364 (560)
Q Consensus 290 -~~~---~~~~~a~~aL~nLa~~-~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l 364 (560)
.++ ..+...+.-..+++.+ +.-.+.+ ..++..|-+++.+.+. .+|+-+++.++.|+..... .+.+-+. .
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~-NiRYLaLEsm~~L~ss~~s-~davK~h--~ 370 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRET-NIRYLALESMCKLASSEFS-IDAVKKH--Q 370 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccc-cchhhhHHHHHHHHhccch-HHHHHHH--H
Confidence 111 1222233323334321 1222222 2367788888888876 8999999999999986432 3333333 6
Q ss_pred HHHHHhccC---CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhH------
Q 008585 365 RSLLAYLDG---PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEM------ 433 (560)
Q Consensus 365 ~~L~~ll~~---~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~------ 433 (560)
+.++..|.. .+++..|+..|..+|..++.+.+ +.-++++|.+-+..+++..+.=+.-|+.. +++
T Consensus 371 d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdv 445 (938)
T KOG1077|consen 371 DTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDV 445 (938)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHhchhhHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence 667777763 46799999999999986565544 67788888888888887766555555521 111
Q ss_pred -HHHH------HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCC
Q 008585 434 -KKLV------GEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDK 483 (560)
Q Consensus 434 -~~~i------~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~ 483 (560)
-+.+ .+.++--.++++.. .+++++..|+..+......+...+.+++-++
T Consensus 446 iLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 446 ILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred HHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 1111 12234444555443 5577888888888777655555555555433
No 112
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.21 E-value=0.02 Score=53.44 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHH
Q 008585 377 QESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAG-----SLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIK 448 (560)
Q Consensus 377 ~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~-----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ 448 (560)
.-+|+..+..++. ++.+..+.+.++--.|..+|... ...++..+...|+.|... .+..+.+...+++|..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 3578888888888 67888888888888888888643 367889999999999865 677888899999999999
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCChhh-------HHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHH
Q 008585 449 LLEAKPNSVREVAAQAISSLVTLPQNC-------REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLM 521 (560)
Q Consensus 449 ll~s~~~~v~~~A~~aL~~L~~~~~~~-------~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i 521 (560)
.+..+++..+..|...+..+..++... .+|..-...+..++.-|.+.+....-+.++.+..+|+.++..|..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999998776542 3333323444555555555555567779999999999999888887
Q ss_pred HHc---ChhHHHHHhhccCchhHHHHHHHHhc
Q 008585 522 ISY---GAIGYLKKLSEMDIPGARKLLERLER 550 (560)
Q Consensus 522 ~~~---g~i~~L~~L~~~~~~~akkl~~~l~~ 550 (560)
..+ +.-..--...-.+|+..|+.++-|-.
T Consensus 256 ~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~ 287 (293)
T KOG3036|consen 256 RSCLPDQLRDGTFSLLLKDDPETKQWLQQLLK 287 (293)
T ss_pred HhhCcchhccchHHHHHhcChhHHHHHHHHHH
Confidence 553 11111123334677888888776643
No 113
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.14 E-value=0.0011 Score=44.15 Aligned_cols=40 Identities=33% Similarity=0.490 Sum_probs=36.3
Q ss_pred hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 268 ~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
++++..+.+.|+++.|+.++.++++.++..++++|+|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4577889999999999999999999999999999999873
No 114
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.13 E-value=0.052 Score=50.74 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=118.9
Q ss_pred HHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHHHhhhcC
Q 008585 177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESG 249 (560)
Q Consensus 177 ~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~ 249 (560)
.|.+.....|+.+..+..+..--.|-.+|... ....|-.++.+++.|...++ .-..+...+++|..++.++.|
T Consensus 101 ~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G 180 (293)
T KOG3036|consen 101 ALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG 180 (293)
T ss_pred HHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc
Confidence 33344444777888888877766666776543 26789999999999998775 667778999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCChhhHHHHHh--------CCChHH-HHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh---
Q 008585 250 STVGKEKATISLQRLSMSAEMARAIVG--------HGGVRP-LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--- 317 (560)
Q Consensus 250 ~~~~~~~a~~~L~~La~~~~~~~~l~~--------~g~i~~-Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--- 317 (560)
+...+..|..++.++-.++..-..+.+ ...+.. +..+.+.+++.+..++.++.-+|+.++..|..+..
T Consensus 181 SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clP 260 (293)
T KOG3036|consen 181 SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLP 260 (293)
T ss_pred cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCc
Confidence 999999999999999887766444432 111222 23344567888999999999999999988877754
Q ss_pred cCcHH-HHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 318 EGIVS-VMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 318 ~g~v~-~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
.+.-. .+..++.++. ..+..-...+.|++.
T Consensus 261 d~Lrd~tfs~~l~~D~--~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 261 DQLRDGTFSLLLKDDP--ETKQWLQQLLKNLCT 291 (293)
T ss_pred chhccchHHHHHhcCh--hHHHHHHHHHHHhcc
Confidence 11111 1223333333 455555555555543
No 115
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.65 Score=51.31 Aligned_cols=169 Identities=12% Similarity=0.118 Sum_probs=117.2
Q ss_pred HccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHH
Q 008585 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPL 242 (560)
Q Consensus 163 L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L 242 (560)
+.+++...|.+|++.+..-...++... -..+-+++...+.+.+++...=.-|...+...+....+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 556667778888876666554333211 12444555555667888887777777777665522222 46777
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHH
Q 008585 243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVS 322 (560)
Q Consensus 243 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~ 322 (560)
.+=+++.++.+|..|.+++..+-. ++.... .++++.+++.++++.+|+.|+-++.++-+. ....+.+.|.+.
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~-~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~ 169 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRV-KELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLID 169 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcCh-HHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHH
Confidence 777888899999999998888733 222222 348888899999999999999999888642 224455677888
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585 323 VMIKLLDCGILLGSKEYAAECLQNLTAS 350 (560)
Q Consensus 323 ~L~~lL~~~~~~~v~~~a~~~L~~La~~ 350 (560)
.+..++.+.++ .+..+|+.+|..+-..
T Consensus 170 ~l~~l~~D~dP-~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 170 ILKELVADSDP-IVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHhhCCCc-hHHHHHHHHHHHhchh
Confidence 88888888887 7999999998888653
No 116
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.0044 Score=65.22 Aligned_cols=252 Identities=13% Similarity=0.136 Sum_probs=164.4
Q ss_pred hchHHH-HHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC----
Q 008585 153 HGNTRE-LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG---- 227 (560)
Q Consensus 153 ~~~i~~-Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~---- 227 (560)
+..++. ++.....++..++..|+..|..|... -+- ..-.....+++++..+.++|..|+..+...+.--
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKL-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccc-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334444 66677788899999999999888652 111 1124677888999988999999987777665422
Q ss_pred --c-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHH-HHHHHH
Q 008585 228 --S-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQA-AAACTL 302 (560)
Q Consensus 228 --~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~-~a~~aL 302 (560)
+ ....+.+ .++..+.+.+++.+..+|-.|+..|+.+.. +++.-.+..+..++. -++. ..... ......
T Consensus 270 e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms----~lRR--kr~ahkrpk~l~ 342 (823)
T KOG2259|consen 270 ERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS----RLRR--KRTAHKRPKALY 342 (823)
T ss_pred cchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh----hhhh--hhhcccchHHHH
Confidence 1 2233333 368889999999999999999999998854 333333332222222 1111 00000 011111
Q ss_pred HHh--c-------C-----CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHH
Q 008585 303 KNI--S-------A-----VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL 368 (560)
Q Consensus 303 ~nL--a-------~-----~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~ 368 (560)
.+- + . .++--..++..|+--.++.=+++.-- +||..|...++.|+...+..... .+.-|+
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~-EVR~AAV~Sl~~La~ssP~FA~~-----aldfLv 416 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFY-EVRRAAVASLCSLATSSPGFAVR-----ALDFLV 416 (823)
T ss_pred hcCCcccCccccccCchhhccccccccccccccceeeeechHHHH-HHHHHHHHHHHHHHcCCCCcHHH-----HHHHHH
Confidence 111 0 0 12334557778888888888888775 89999999999999987765432 377888
Q ss_pred HhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008585 369 AYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV 427 (560)
Q Consensus 369 ~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L 427 (560)
.++++ ..++..|+.+|..++.. ..++...++.++..|...++++++..-..|.+.
T Consensus 417 DMfNDE~~~VRL~ai~aL~~Is~~----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 417 DMFNDEIEVVRLKAIFALTMISVH----LAIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHH----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88877 67899999999999862 112233467777777777777777666655554
No 117
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.047 Score=51.63 Aligned_cols=220 Identities=18% Similarity=0.190 Sum_probs=133.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCchhHHHHH
Q 008585 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLA 316 (560)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~ 316 (560)
+..+.+...+++...+...+.+|..+.. ...++.|+..+.+ ..|.+|..|+.+|.++..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------- 98 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------- 98 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc---------
Confidence 5555555555555555566666666532 4456888888865 567788899999987762
Q ss_pred hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH-----HHH-H------hCCCHHHHHHhccC---C-ccHHHH
Q 008585 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR-----RSV-V------SEGGIRSLLAYLDG---P-LPQESA 380 (560)
Q Consensus 317 e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~-----~~i-~------~~g~l~~L~~ll~~---~-~~~~~a 380 (560)
...++.+-++.+++.. .+++.+..++..+-..+..-. .+. + ..+-+..+-..+.+ + -.+..|
T Consensus 99 -~~~~~~l~k~~~dp~~-~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~a 176 (289)
T KOG0567|consen 99 -PESLEILTKYIKDPCK-EVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRA 176 (289)
T ss_pred -hhhHHHHHHHhcCCcc-ccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhh
Confidence 2345666666655554 677777777777654221110 000 0 01113333333322 1 125567
Q ss_pred HHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc--cCCHHHH
Q 008585 381 VGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE--AKPNSVR 458 (560)
Q Consensus 381 ~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~--s~~~~v~ 458 (560)
+..|+|+... ..|..|.+-+..++.-.|..++.+++.|-.. -.++.|.+.|. ..++.+|
T Consensus 177 mF~LRn~g~E---------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVR 237 (289)
T KOG0567|consen 177 MFYLRNIGTE---------EAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVR 237 (289)
T ss_pred hhHhhccCcH---------HHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHH
Confidence 7777776431 2366677777778888999999999998643 34777777775 3677899
Q ss_pred HHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHH
Q 008585 459 EVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS 510 (560)
Q Consensus 459 ~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~ 510 (560)
..|++||..++ .+ ..++.|.+.+++. .+.+++.+..+|-.
T Consensus 238 hEaAeALGaIa--~e---------~~~~vL~e~~~D~-~~vv~esc~valdm 277 (289)
T KOG0567|consen 238 HEAAEALGAIA--DE---------DCVEVLKEYLGDE-ERVVRESCEVALDM 277 (289)
T ss_pred HHHHHHHHhhc--CH---------HHHHHHHHHcCCc-HHHHHHHHHHHHHH
Confidence 99999999985 22 2344555556553 34566666655543
No 118
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.05 E-value=0.0023 Score=66.63 Aligned_cols=256 Identities=13% Similarity=0.108 Sum_probs=157.9
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhH---HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHH
Q 008585 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA---RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~---~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~ 314 (560)
.+..++..|++.++.+|+.|+.....|+.--.++ ..+...|. .|.+-+...+|++.-..+.+++.+...-..+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 4566777888999999999999888886532221 12222232 355667778899988888887777543222211
Q ss_pred H-HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH---HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhh
Q 008585 315 L-AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL---RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV 388 (560)
Q Consensus 315 i-~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~---~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla 388 (560)
- --.|++|.+..+|++.+. .++.+....++.++...++. |+-+ ..--.|+..|.+ .+++.+|...++.++
T Consensus 683 qpPi~~ilP~ltPILrnkh~-Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQ-KVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred CCchhhccccccHhhhhhhH-HHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 0 115789999999999997 89999999999999866541 1111 111224445544 578899999999998
Q ss_pred ccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585 389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (560)
Q Consensus 389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L 468 (560)
..-.++ .++..|++-|+..+...+....-+++-.+.. +-. ..++|.|+.=...++..+|.-.+.+++.+
T Consensus 759 ~aiGPq-----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~---cgp---fsVlP~lm~dY~TPe~nVQnGvLkam~fm 827 (975)
T COG5181 759 RAIGPQ-----DVLDILLNNLKVQERQQRVCTSVAISIVAEY---CGP---FSVLPTLMSDYETPEANVQNGVLKAMCFM 827 (975)
T ss_pred hhcCHH-----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---cCc---hhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence 743332 2355566656555544444444444444421 111 24677777777778888999999999998
Q ss_pred cCCChhh-HHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585 469 VTLPQNC-REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (560)
Q Consensus 469 ~~~~~~~-~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 513 (560)
...-.+. ...+- -..+.|-..|.+.+ ...+..+...+.+|+-
T Consensus 828 Feyig~~s~dYvy--~itPlleDAltDrD-~vhRqta~nvI~Hl~L 870 (975)
T COG5181 828 FEYIGQASLDYVY--SITPLLEDALTDRD-PVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHHHH--HhhHHHHhhhcccc-hHHHHHHHHHHHHHhc
Confidence 7443332 22221 12233444444442 2356667777776664
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.00 E-value=0.0025 Score=60.91 Aligned_cols=175 Identities=21% Similarity=0.186 Sum_probs=106.6
Q ss_pred cCCchhHHHHHHHHHHHHccCC--hhHHHHHHh--CCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCc
Q 008585 330 CGILLGSKEYAAECLQNLTASN--ENLRRSVVS--EGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGF 401 (560)
Q Consensus 330 ~~~~~~v~~~a~~~L~~La~~~--~~~~~~i~~--~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~ 401 (560)
+.+. ..+..++.-|..+..++ ......+++ ...+..+...+.+ ..+...|+.++..++. ....+.. -..+
T Consensus 18 ~~~W-~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 18 ESDW-EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp -SSH-HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred ccCH-HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 3444 78889999999998765 222222222 1344556666655 5678899999999987 2222222 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCChh-HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh----hhH
Q 008585 402 FPRLVHVLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ----NCR 476 (560)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~-~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~----~~~ 476 (560)
++.|+..+.++...++..|..+|..++.+.. ..+.+ .+.+.....++++.+|..++..+..+....+ ...
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 8889999999889999999999999997643 22222 5667777889999999999999999984433 111
Q ss_pred HHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 477 EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 477 ~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
....-...++.+...+.+.+ ..++.++-.++..+.
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDAD-PEVREAARECLWALY 205 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHH
Confidence 11000234577788888774 458889888888774
No 120
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.99 E-value=0.18 Score=55.92 Aligned_cols=308 Identities=17% Similarity=0.146 Sum_probs=183.9
Q ss_pred hhhhchHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585 150 ATTHGNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 150 ~~~~~~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (560)
+++...++.....+- ...+.++..++..+..++..-+. .....+.++.+.++.......+|+.|...+..+...-.
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 556667777777774 44566777778888888764432 45566889999999988888999999988888876432
Q ss_pred hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-
Q 008585 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA- 307 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~- 307 (560)
..... .....+.+++..++++..++.........+...-+. ......-+++...++++...+.+...+.-...++.
T Consensus 309 ~~~d~-~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 309 DDDDV-VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred Cchhh-hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 21111 123678899999999999988888777777543111 22223345677788887777777776666666654
Q ss_pred -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585 308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL 384 (560)
Q Consensus 308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L 384 (560)
+.+....+....++|.+-.+..+... .++...+..+.++.--.+..+ - -.-..+.+...+.+ +.++.+-...+
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~~-~vr~a~a~~~~~~~p~~~k~~--t-i~~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNAL-HVRSALASVITGLSPILPKER--T-ISELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhcccc-hHHHHHhccccccCccCCcCc--C-ccccChhhhhhcchhhHHHHHhhHHHH
Confidence 33455556666678888888877775 677777666666543221000 0 01113333333433 45555555444
Q ss_pred HHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHH
Q 008585 385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAA 462 (560)
Q Consensus 385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~ 462 (560)
..+-. ............++.++.+-......++....+.+..++.... ..+.+...-+.+...+.+.-..+|+.|+
T Consensus 462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa 539 (759)
T KOG0211|consen 462 SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAA 539 (759)
T ss_pred HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence 33322 1111222334445555555554556666777777766664322 2222222334444444444556777777
Q ss_pred HHHHHhc
Q 008585 463 QAISSLV 469 (560)
Q Consensus 463 ~aL~~L~ 469 (560)
..+..++
T Consensus 540 ~~l~~l~ 546 (759)
T KOG0211|consen 540 RNLPALV 546 (759)
T ss_pred HHhHHHH
Confidence 7777776
No 121
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.97 E-value=0.0016 Score=46.81 Aligned_cols=55 Identities=22% Similarity=0.069 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585 292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL 347 (560)
Q Consensus 292 ~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L 347 (560)
|.+|..|+++|.+++........-....+++.|+.+|+++++ .||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~-~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD-SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH-HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHhcC
Confidence 578999999999998654333333445689999999998887 8999999999875
No 122
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.15 Score=54.88 Aligned_cols=310 Identities=14% Similarity=0.122 Sum_probs=173.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCC----chHHH
Q 008585 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVICSLAESG----SCENW 232 (560)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~----~~~~~ 232 (560)
++...|..|+.+.+.+|++.+..+...++..- +.+-.+++ .|.+.+.+++..- ...+.+.-.. ...+.
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p------~Llm~IiRfvlps~~~elKKLl-y~ywE~vPKt~~dgkl~~E 96 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDLP------SLLMTIIRFVLPSRNHELKKLL-YYYWELVPKTDSDGKLLHE 96 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCch------HHHHHHhheeeccCchHHHHHH-HHHHHHccccCCCcccHHH
Confidence 56677899999999999998877765444221 11122222 2334455554433 3333343221 12222
Q ss_pred HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Q 008585 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312 (560)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~ 312 (560)
++= +...+-+=|+.++..+|....+.|++|-. ++.... .+|.+...|.+..+-+|++|..++..+-.+.
T Consensus 97 MIL--vcna~RkDLQHPNEyiRG~TLRFLckLkE-~ELlep-----l~p~IracleHrhsYVRrNAilaifsIyk~~--- 165 (948)
T KOG1058|consen 97 MIL--VCNAYRKDLQHPNEYIRGSTLRFLCKLKE-PELLEP-----LMPSIRACLEHRHSYVRRNAILAIFSIYKNF--- 165 (948)
T ss_pred HHH--HHHHHhhhccCchHhhcchhhhhhhhcCc-HHHhhh-----hHHHHHHHHhCcchhhhhhhheeehhHHhhh---
Confidence 211 23444455777899999999999999843 333332 3477777788899999999998887765431
Q ss_pred HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-----CccHHHHHHHHHHh
Q 008585 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-----PLPQESAVGALRNL 387 (560)
Q Consensus 313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-----~~~~~~a~~~L~nl 387 (560)
..+. ..+-..+-++|..+.+...+++|...|... +++.. +..+...++. +..+...+..|+..
T Consensus 166 ~~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~ErA--------l~Yl~~~idqi~~~~~~LqlViVE~Irkv 233 (948)
T KOG1058|consen 166 EHLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPERA--------LNYLLSNIDQIPSFNDSLQLVIVELIRKV 233 (948)
T ss_pred hhhc-CChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHHH--------HHHHHhhHhhccCccHHHHHHHHHHHHHH
Confidence 1111 223344445554444336778877766543 23321 3333333322 33455566666666
Q ss_pred hc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHH
Q 008585 388 VG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAI 465 (560)
Q Consensus 388 a~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL 465 (560)
|. .... +..++..+..+|.+.++.|.-+|+.+|.+++..+..-+.- ...+++++.. .+..++.....-|
T Consensus 234 ~~~~p~~----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl 304 (948)
T KOG1058|consen 234 CLANPAE----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRL 304 (948)
T ss_pred HhcCHHH----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHH
Confidence 65 1121 3567899999999989999999999999988876655544 3334444432 2333443333334
Q ss_pred HHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
..+. .+.+.+++ +.+...++.|++.+- +++.-++.+...|.
T Consensus 305 ~~l~---~~~~~il~--~l~mDvLrvLss~dl-dvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 305 SELK---ALHEKILQ--GLIMDVLRVLSSPDL-DVRSKTLDIALDLV 345 (948)
T ss_pred HHHh---hhhHHHHH--HHHHHHHHHcCcccc-cHHHHHHHHHHhhh
Confidence 4442 23333343 445566666666533 24444554444443
No 123
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.16 Score=54.91 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=95.1
Q ss_pred CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhc--cccHHHH
Q 008585 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG--SVSQEVL 396 (560)
Q Consensus 319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~--~~~~~~l 396 (560)
+.+.-|..+|......+-+.....++..+...++..++ .++..|..++.+.....-+.+.|.-+.. +...
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~--- 462 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAP--- 462 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhccCCCCC---
Confidence 34555666665533335677777777777776665443 3477888888887788888888888876 2111
Q ss_pred HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 397 ~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.....+..+.+.+--.+..++..|..++.+++.. +..+.. ..-.|.+.+.+.+.++|+.|..+|..+-
T Consensus 463 ~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~s-----I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPS-----ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcccc-----HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 1234566666666667889999999999999833 333322 3556777778899999999999999985
No 124
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.92 E-value=0.0026 Score=42.34 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008585 187 KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE 225 (560)
Q Consensus 187 ~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~ 225 (560)
+++..+++.|+++.|++++++++++++..++++|.+|+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 466788899999999999999899999999999999873
No 125
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.022 Score=61.64 Aligned_cols=236 Identities=19% Similarity=0.160 Sum_probs=154.7
Q ss_pred CchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHH-HhhCChhhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHH
Q 008585 227 GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQ-RLSMSAEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKN 304 (560)
Q Consensus 227 ~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~n 304 (560)
..-+...++.|+...|+++...+.+..+.....+|. .+....+-. ...++++...+..... .-...++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 336777889999999999999888888888777777 333322211 1233555555443221 123568999999
Q ss_pred hcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhccC--CccHHHH
Q 008585 305 ISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--PLPQESA 380 (560)
Q Consensus 305 La~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll~~--~~~~~~a 380 (560)
|+. ++..++.+..+..++.+-.++...++ ..|..++.++.||..+..-..+.+++ ...++.....++. ......+
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~-~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENP-ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccH-HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 987 45677778887777777777766765 79999999999999987666666666 4455555555544 2333344
Q ss_pred HHHHHHhhc---cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHH
Q 008585 381 VGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNS 456 (560)
Q Consensus 381 ~~~L~nla~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~ 456 (560)
.+++..++. ..+............++.++.++++++|......+.|+... .+....+.....++.+..+-.-....
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 444443433 11221333456688889999999999999999999996533 56666666666666666655544444
Q ss_pred HHHHHHHHHHHh
Q 008585 457 VREVAAQAISSL 468 (560)
Q Consensus 457 v~~~A~~aL~~L 468 (560)
.++.+..+|...
T Consensus 728 ~~~~~~~~l~~a 739 (748)
T KOG4151|consen 728 KREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhHHHHH
Confidence 555555555443
No 126
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.82 E-value=0.1 Score=59.02 Aligned_cols=262 Identities=15% Similarity=0.118 Sum_probs=161.0
Q ss_pred hHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC----Cc
Q 008585 155 NTRELLARLQI-GHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES----GS 228 (560)
Q Consensus 155 ~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~----~~ 228 (560)
.+.-+...++. ...+.|.+|+.-|..++..- ++.+ -...+|.++.++..+..++|..|+.+|..+-.. +.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 45555566643 44677999999998887532 2221 125799999999999999999999888887542 22
Q ss_pred hHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhh----HHHHHh-------------------------CC
Q 008585 229 CENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEM----ARAIVG-------------------------HG 278 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~----~~~l~~-------------------------~g 278 (560)
.-..+.-+-.+|.|-.++.+ ....+|..-+.+|..|+...-. ...+.. ++
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 44455666688999999988 4445666656666666532100 001000 11
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhc----CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH
Q 008585 279 GVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE----GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (560)
Q Consensus 279 ~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~----g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (560)
+-.....+|.++++.+++.-+..|.-|| ..|... =+++.|+.+|++.+. .+|-.=...+.-++.. +
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ksND~iLshLiTfLNDkDw-~LR~aFfdsI~gvsi~---V 648 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEKSNDVILSHLITFLNDKDW-RLRGAFFDSIVGVSIF---V 648 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhcccccchHHHHHHHhcCccH-HHHHHHHhhccceEEE---E
Confidence 2223445566666677777666666554 334432 257777788887764 5554333333322221 0
Q ss_pred HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585 355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 355 ~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~ 430 (560)
-..-++...+|.|.+-|.+ +-+...|+++|..|+.....+...-..+++....+|-+++.-++..++..|...++.
T Consensus 649 G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 649 GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 0111233447777777866 557889999999998732222222233455566677788999999999999888754
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.79 E-value=0.002 Score=46.27 Aligned_cols=55 Identities=25% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585 251 TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (560)
Q Consensus 251 ~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (560)
+.+|..|+++|.+++........-....+++.|+.+++++++.+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999987655544445667889999999999999999999999875
No 128
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.24 Score=51.87 Aligned_cols=300 Identities=17% Similarity=0.144 Sum_probs=147.4
Q ss_pred HHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHH
Q 008585 176 DSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKE 255 (560)
Q Consensus 176 ~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~ 255 (560)
+...++..++++.... ..|.|-..|++.-..++..+++.+..++...-. ..+++ ..+..|-.+|++.....|-
T Consensus 249 r~~~~ll~~n~q~~~q-----~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~~~~~-~~vs~L~~fL~s~rv~~rF 321 (898)
T COG5240 249 RATVELLKENSQALLQ-----LRPFLNSWLSDKFEMVFLEAARAVCALSEENVG-SQFVD-QTVSSLRTFLKSTRVVLRF 321 (898)
T ss_pred HHHHHHHHhChHHHHH-----HHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-HHHHH-HHHHHHHHHHhcchHHHHH
Confidence 3444455444433222 244555556555467788888888888765421 11111 1466677778888888888
Q ss_pred HHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchh
Q 008585 256 KATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLG 335 (560)
Q Consensus 256 ~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~ 335 (560)
.|.++|..|+...+.+...+. +.+=.+..+.+..+-..|..+|..- .++++...++. .|+.+++=+.+ .
T Consensus 322 sA~Riln~lam~~P~kv~vcN----~evEsLIsd~Nr~IstyAITtLLKT-Gt~e~idrLv~--~I~sfvhD~SD----~ 390 (898)
T COG5240 322 SAMRILNQLAMKYPQKVSVCN----KEVESLISDENRTISTYAITTLLKT-GTEETIDRLVN--LIPSFVHDMSD----G 390 (898)
T ss_pred HHHHHHHHHHhhCCceeeecC----hhHHHHhhcccccchHHHHHHHHHc-CchhhHHHHHH--HHHHHHHhhcc----C
Confidence 999999999876544433322 2222444455555544555444332 23344333322 23333333332 3
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHh
Q 008585 336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLK 410 (560)
Q Consensus 336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~ 410 (560)
.+..+..++..|+...+.-+..+ +.-|...|.+ -+....++.+|..+.. ++.++ ..+..|..++.
T Consensus 391 FKiI~ida~rsLsl~Fp~k~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIE 460 (898)
T COG5240 391 FKIIAIDALRSLSLLFPSKKLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIE 460 (898)
T ss_pred ceEEeHHHHHHHHhhCcHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHh
Confidence 34444555555554334322222 1222222211 1223334444444433 22221 22344444443
Q ss_pred cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHH
Q 008585 411 AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLV 489 (560)
Q Consensus 411 ~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv 489 (560)
+.. -.+.+.+.|+-|... |..... ...+.++..-+--.+.-+|..|..||...+.+..+.... ......|-
T Consensus 461 Dce--y~~I~vrIL~iLG~EgP~a~~P---~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~---~sv~~~lk 532 (898)
T COG5240 461 DCE--YHQITVRILGILGREGPRAKTP---GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP---QSVENALK 532 (898)
T ss_pred hcc--hhHHHHHHHHHhcccCCCCCCc---chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH---HHHHHHHH
Confidence 321 122233344444321 110000 012344444444467789999999999998654442110 01225566
Q ss_pred hccCCCCchhhHHHHHHHHHHhC
Q 008585 490 QLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 490 ~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
+.+++.+ ++++..|.-.+.++-
T Consensus 533 RclnD~D-deVRdrAsf~l~~~~ 554 (898)
T COG5240 533 RCLNDQD-DEVRDRASFLLRNMR 554 (898)
T ss_pred HHhhccc-HHHHHHHHHHHHhhh
Confidence 7777764 457888877777774
No 129
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.73 Score=50.90 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=111.8
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
+....++.++...+.|.|.|+-.-..|...++.+|+-... .+..+.+=++++++.+|-.|++.++.+-...
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~d~N~~iR~~AlR~ls~l~~~e---- 123 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQDPNEEIRGFALRTLSLLRVKE---- 123 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhccCCCHHHHHHHHHHHHhcChHH----
Confidence 5556777788778888888888878888888877733221 4777888889999999999999998875432
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
+. ...++++.++++++++.+|..|+-++.++-. ++ ..+.+.|.+..+..++.+.+|.+...|..+|..+-.
T Consensus 124 -l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 124 -LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred -HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 11 2368999999999999999999999999953 33 334456777888888999999999999999998864
No 130
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.71 E-value=0.28 Score=47.74 Aligned_cols=226 Identities=15% Similarity=0.065 Sum_probs=144.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCC-CHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChhhHHHHHh-CC
Q 008585 203 QLLTATSPRIREKTVTVICSLAESGSCENWLVSEG-VLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVG-HG 278 (560)
Q Consensus 203 ~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g-~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~l~~-~g 278 (560)
++++.-++-.+-.|+.++.++....+.|..+-.++ .-..++.++++. ...+|.+..-+++-++.+++.++.+-. ..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444456678899999999999998777665544 455677777764 678899999999999999988754432 34
Q ss_pred ChHHHHHHhcc-CChHHHHHHHHHHHHhcC-Cc-hhHHHHHhcC-cHHHHHHHhhcCC-chhHHHHHHH-----------
Q 008585 279 GVRPLIEICQT-GDSVSQAAAACTLKNISA-VP-EVRQMLAEEG-IVSVMIKLLDCGI-LLGSKEYAAE----------- 342 (560)
Q Consensus 279 ~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~-~~-~~~~~i~e~g-~v~~L~~lL~~~~-~~~v~~~a~~----------- 342 (560)
.+..|+.+.+. ....+-+.++.++.|++. .+ +....+.-.| +.++.--+++.+- +.+++...-.
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 55667777765 345667889999999986 32 3333333334 5555444443221 1122221111
Q ss_pred ------HHHHHcc-----CCh--------hHHHHHHhCC--CHHHHHHhccC--Cc-cHHHHHHHHHHhhc--cccHHHH
Q 008585 343 ------CLQNLTA-----SNE--------NLRRSVVSEG--GIRSLLAYLDG--PL-PQESAVGALRNLVG--SVSQEVL 396 (560)
Q Consensus 343 ------~L~~La~-----~~~--------~~~~~i~~~g--~l~~L~~ll~~--~~-~~~~a~~~L~nla~--~~~~~~l 396 (560)
.+.+|-+ +.+ .+...+.+.+ .+..|.++++. +. ....|+.=|..+.+ |+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 1111111 000 0122222222 36677777765 33 34456666677766 7888888
Q ss_pred HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 397 ~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
...|+-..+++++++++++|+-+|..++..+-
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999887654
No 131
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.69 E-value=0.0074 Score=49.00 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhh-cCCchhHHHHHHHHHHHHccCChhHHHHHHh
Q 008585 294 SQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRRSVVS 360 (560)
Q Consensus 294 ~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~-~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~ 360 (560)
.+.....+|.|++. ++.++..+.+.|+++.++.... ++..+.++++|+.++.||+.+++++++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35677889999995 7799999999999999988754 2333489999999999999999999876654
No 132
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.64 E-value=0.076 Score=50.57 Aligned_cols=214 Identities=15% Similarity=0.143 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhc-------cCCcc-------HHHHHHHHHHhhc-cccHHHHHh
Q 008585 335 GSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYL-------DGPLP-------QESAVGALRNLVG-SVSQEVLIS 398 (560)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll-------~~~~~-------~~~a~~~L~nla~-~~~~~~l~~ 398 (560)
+.|+.|+.-|..--...++....+.+ -|.+..|++=+ ..+.. .-+|+..+..++. ++.+..+++
T Consensus 10 ~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~ 89 (262)
T PF04078_consen 10 ETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLK 89 (262)
T ss_dssp HHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHH
T ss_pred chHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 56888877777666666677666665 45555555543 22221 2467777888888 788999999
Q ss_pred CCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 399 LGFFPRLVHVLKAGS-----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 399 ~~~i~~Lv~lL~~~~-----~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
.++.-.|..+|+..+ ..++-.+..+++.+... ++....+.+.+.+|..++.++.+++-.+..|...+..+..+
T Consensus 90 a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 90 AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLD 169 (262)
T ss_dssp TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS
T ss_pred cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 999888888887643 57888999999999974 77888999999999999999999998999999999998866
Q ss_pred ChhhHH-------HhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHH----hhccCchh
Q 008585 472 PQNCRE-------VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKK----LSEMDIPG 540 (560)
Q Consensus 472 ~~~~~~-------~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~----L~~~~~~~ 540 (560)
+..... |..=...+..++.-+...+....-++.+.|...|+.++..|..+... .-..|.+ -.-.+|+.
T Consensus 170 d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~-LP~~Lrd~~f~~~l~~D~~ 248 (262)
T PF04078_consen 170 DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQC-LPDQLRDGTFSNILKDDPS 248 (262)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHH-S-GGGTSSTTTTGGCS-HH
T ss_pred hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHh-CcHHHhcHHHHHHHhcCHH
Confidence 654332 22222344555544444444457779999999999999999888651 1111211 11134677
Q ss_pred HHHHHHHHh
Q 008585 541 ARKLLERLE 549 (560)
Q Consensus 541 akkl~~~l~ 549 (560)
.|+.++.|-
T Consensus 249 ~k~~l~qLl 257 (262)
T PF04078_consen 249 TKRWLQQLL 257 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777664
No 133
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.43 E-value=0.021 Score=58.16 Aligned_cols=294 Identities=17% Similarity=0.106 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC------CchHHHHHhCCCHHH
Q 008585 168 LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES------GSCENWLVSEGVLPP 241 (560)
Q Consensus 168 ~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~------~~~~~~l~~~g~i~~ 241 (560)
..++.+|+..|.-++..-.-.+..+++ ....+..-+...++.+++.++.++..+... ++..+.-...|.+-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 456888888887776432211111111 122233334556799999999998887642 121111111121111
Q ss_pred HH------Hhh-hcCCHHHHHHHHHHHHHhhCC-----hhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCC
Q 008585 242 LI------RLV-ESGSTVGKEKATISLQRLSMS-----AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV 308 (560)
Q Consensus 242 Lv------~lL-~~~~~~~~~~a~~~L~~La~~-----~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~ 308 (560)
+. ... .+..+..+...|..+.++... ++.++.. .+.+..=|.+ ++.-++..|.+++.-+.-+
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~-----~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH 421 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTL-----CITFLLGCNDSKNRLVKAAASRALGVYVLH 421 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhh-----hHHHHhcccchHHHHHHHHHHhhceeEEec
Confidence 11 011 112334556677777777431 1212111 0122222222 2233455666666555556
Q ss_pred chhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc----CChhHHHHHHhC-C-CHHHHHHhc-----cCCcc
Q 008585 309 PEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA----SNENLRRSVVSE-G-GIRSLLAYL-----DGPLP 376 (560)
Q Consensus 309 ~~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~----~~~~~~~~i~~~-g-~l~~L~~ll-----~~~~~ 376 (560)
+..+....- ..+...+...+.+..- .+|+.+.++++||+. +-+..+..--+. | .+..+++.- +..++
T Consensus 422 p~lr~d~~fv~~aa~~il~sl~d~~l-n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV 500 (728)
T KOG4535|consen 422 PCLRQDVIFVADAANAILMSLEDKSL-NVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKV 500 (728)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhHhH-hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 655544332 3444445555555443 689999999999986 222211111111 1 122222221 12678
Q ss_pred HHHHHHHHHHhhc--c---ccHHHHHhCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHhCChhH--HHHHHhcCCHHHHHH
Q 008585 377 QESAVGALRNLVG--S---VSQEVLISLGFFPRLVH-VLKAGSLGAQQAAASALCRVCTSAEM--KKLVGEAGCTPLLIK 448 (560)
Q Consensus 377 ~~~a~~~L~nla~--~---~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~A~~aL~~La~~~~~--~~~i~~~g~i~~Lv~ 448 (560)
+.+++++|+|+.. . +..-.....+.+..+.. ..-.+...||.+|+.+++||..++.. +..=+.....+.|..
T Consensus 501 ~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~ 580 (728)
T KOG4535|consen 501 KSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTS 580 (728)
T ss_pred hhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHH
Confidence 9999999999986 1 11111122333333332 22235678999999999999987543 111122235677777
Q ss_pred HHc-cCCHHHHHHHHHHHHHhc
Q 008585 449 LLE-AKPNSVREVAAQAISSLV 469 (560)
Q Consensus 449 ll~-s~~~~v~~~A~~aL~~L~ 469 (560)
++. ..|..+|..|+.+|..-.
T Consensus 581 Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 581 LVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHhccceEeehhhhhhcCCC
Confidence 775 477889999999887665
No 134
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.40 E-value=0.032 Score=49.81 Aligned_cols=143 Identities=22% Similarity=0.259 Sum_probs=96.8
Q ss_pred HHHHHHHhhc-CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc--c-ccHH
Q 008585 321 VSVMIKLLDC-GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--S-VSQE 394 (560)
Q Consensus 321 v~~L~~lL~~-~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~-~~~~ 394 (560)
+..++..+.. ..+.++|..+.-++..+- +..++.. ..-.-..+-..+.. .+....++.++..+-. + .+..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 4455555554 222378999998888873 2222221 11112222233333 5567778888887776 3 3445
Q ss_pred HHHhCCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc-cCCHH-HHHHHHHHHHHh
Q 008585 395 VLISLGFFPRLVHVLK--AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNS-VREVAAQAISSL 468 (560)
Q Consensus 395 ~l~~~~~i~~Lv~lL~--~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~-s~~~~-v~~~A~~aL~~L 468 (560)
.+...|+++.++.++. ..+..++..++.+|..-|.+...|..+.+.| ++.|.++++ ++++. +|..|+-+|+.|
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 5567899999999999 7889999999999999888888888877765 999999995 56566 899998888764
No 135
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.40 E-value=0.15 Score=52.13 Aligned_cols=188 Identities=17% Similarity=0.165 Sum_probs=125.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhCh---HHHHHHhhCCCHHHHHHhhcCCC-------HHHHHHHHHHHHHHhcC
Q 008585 157 RELLARLQIGHLEAKHKALDSLVEAMKEDE---KNVLAVMGRSNIAALVQLLTATS-------PRIREKTVTVICSLAES 226 (560)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~---~~~~~i~~~g~v~~Lv~lL~~~~-------~~v~~~A~~~L~~La~~ 226 (560)
.++...+...+.+.+..|+--...+.+.++ .+++.+.+.-|.+.+-++|.+.+ .-.+..++.+|..++..
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 346666677777888888888888887655 45667888888888888887542 33466788899999998
Q ss_pred Cc--hHHHHHhCCCHHHHHHhhhcC-------CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChH-HHH
Q 008585 227 GS--CENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV-SQA 296 (560)
Q Consensus 227 ~~--~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~-~~~ 296 (560)
++ ..+.+++ .||.|..++..+ +..+.+.+-.||..++..+.....+...|+++.+.++-.-++-. -+.
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence 87 4556655 589999998754 22367788899999999988999999999999998776543222 222
Q ss_pred HHHHHHHHhc----CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 297 AAACTLKNIS----AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 297 ~a~~aL~nLa----~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
.++.++--+. ..++.-..+.. .+..+..=+...++ ..+...+..|..+-.
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~-a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHN-ALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhh-HHHHHHHHHHHHHHh
Confidence 2333322221 12333333322 13333333344454 678888888886544
No 136
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.28 Score=56.92 Aligned_cols=395 Identities=15% Similarity=0.116 Sum_probs=207.2
Q ss_pred hHHhhhhhhhhhhchhhHHhhCCCCCCCcccccCCCCCchhhhhhchHHHHHHHHccCCHH-------------------
Q 008585 109 LDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLE------------------- 169 (560)
Q Consensus 109 ~~~~~~~l~~~~~d~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~i~~Ll~~L~~~~~~------------------- 169 (560)
...+..+|...+.|=+++.+--.. .+-.+|-..+.. ......+..|+..|..|...
T Consensus 859 ~~eI~~aF~~~Lsd~dEf~QDvAs-rGlglVYelgd~----~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~T 933 (1702)
T KOG0915|consen 859 LKEIQEAFSHLLSDNDEFSQDVAS-RGLGLVYELGDS----SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKT 933 (1702)
T ss_pred cHHHHHHHHHHhcccHHHHHHHHh-cCceEEEecCCc----hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCC
Confidence 334556666667776666653221 222344444322 22344566666666322211
Q ss_pred ---HHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHH
Q 008585 170 ---AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLI 243 (560)
Q Consensus 170 ---~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv 243 (560)
-+...-+.|++|+++-. +.+.|=..+++-+++. ..-+.-|+-.++.++.... .+..+. ..||.|.
T Consensus 934 p~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~--kLIPrLy 1004 (1702)
T KOG0915|consen 934 PDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK--KLIPRLY 1004 (1702)
T ss_pred CCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH--HhhHHHh
Confidence 02334455666654311 2233444555655543 5667777777787776542 222222 2688888
Q ss_pred HhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc---hhHHHHHhcCc
Q 008585 244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP---EVRQMLAEEGI 320 (560)
Q Consensus 244 ~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~---~~~~~i~e~g~ 320 (560)
+.=-+++..++..-..+...|..++.....-.-..+++.|+.-|.+..+.+|..+|-||..|-... +..+.+- ..
T Consensus 1005 RY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--el 1082 (1702)
T KOG0915|consen 1005 RYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--EL 1082 (1702)
T ss_pred hhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HH
Confidence 888888998888777777777777555444444566688888888899999999999999998644 3334443 35
Q ss_pred HHHHHHHhhcCCchhHHHHH---HHHHHHHccCChhHHHHHHhCCCHHHHHHhcc------C-CccHHHHHHHHHHhhcc
Q 008585 321 VSVMIKLLDCGILLGSKEYA---AECLQNLTASNENLRRSVVSEGGIRSLLAYLD------G-PLPQESAVGALRNLVGS 390 (560)
Q Consensus 321 v~~L~~lL~~~~~~~v~~~a---~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~------~-~~~~~~a~~~L~nla~~ 390 (560)
...++..+++-.+ .||+.+ +.+|..++...-+.-.-.-....+..++.++- . +.++..++..+.-|+..
T Consensus 1083 w~~~fRvmDDIKE-sVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1083 WEAAFRVMDDIKE-SVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS 1161 (1702)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh
Confidence 5556666655443 566664 55555554310000000000112344444431 1 56788899999888873
Q ss_pred ccHHHH-HhCCcHHHHHHHHhcCCH-----------HHHHHHHHHHHH-HhCChhHHHHH----------HhcCCHHHHH
Q 008585 391 VSQEVL-ISLGFFPRLVHVLKAGSL-----------GAQQAAASALCR-VCTSAEMKKLV----------GEAGCTPLLI 447 (560)
Q Consensus 391 ~~~~~l-~~~~~i~~Lv~lL~~~~~-----------~v~~~A~~aL~~-La~~~~~~~~i----------~~~g~i~~Lv 447 (560)
.....- .-...|+.|++....-++ ....+|...++. .+.+...-..+ .-...+|.+.
T Consensus 1162 sg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~ 1241 (1702)
T KOG0915|consen 1162 SGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLT 1241 (1702)
T ss_pred chhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 222100 111234444444433222 333444444442 23331111111 1124677888
Q ss_pred HHHccC-CHHHHHHHHHHHHHhc-CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC--ChhhHHHHHH
Q 008585 448 KLLEAK-PNSVREVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP--SKKCKKLMIS 523 (560)
Q Consensus 448 ~ll~s~-~~~v~~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~--~~~~r~~i~~ 523 (560)
+++.+. .-..+..++..++.|+ ......+.+. ++.+..++..+.+.+.. ++++...+...|++ +++.-.++++
T Consensus 1242 el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s--gKll~al~~g~~dRNes-v~kafAsAmG~L~k~Ss~dq~qKLie 1318 (1702)
T KOG0915|consen 1242 ELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS--GKLLRALFPGAKDRNES-VRKAFASAMGYLAKFSSPDQMQKLIE 1318 (1702)
T ss_pred HHHhccCCCCcchhHHHHHHHHHHHhccccCcch--hHHHHHHhhccccccHH-HHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 888642 4446677777777776 2233333322 24456666666665443 44454444444443 3433334433
No 137
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.33 E-value=0.3 Score=50.28 Aligned_cols=128 Identities=9% Similarity=0.114 Sum_probs=96.2
Q ss_pred HHh-CCCHHHHHHhhhcC---CHHHHHHHHHHHHHhhCChhh-HHHHHhCCChHHHHHHhc-c---CChHHHHHHHHHHH
Q 008585 233 LVS-EGVLPPLIRLVESG---STVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQ-T---GDSVSQAAAACTLK 303 (560)
Q Consensus 233 l~~-~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~-~~~l~~~g~i~~Lv~ll~-~---~~~~~~~~a~~aL~ 303 (560)
+++ ...+..|..+++.. .+.+-..|+.++..+..+++. -..+.+.|.++.+++.+. . ++.++....-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 44556666677765 566778888999998877555 456778999999999887 4 45677777788888
Q ss_pred HhcCCchhHHHHHhcCcHHHHHHHhhcCCch------hHHHHHHHHHHHHccCChhHHHHHHh
Q 008585 304 NISAVPEVRQMLAEEGIVSVMIKLLDCGILL------GSKEYAAECLQNLTASNENLRRSVVS 360 (560)
Q Consensus 304 nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~------~v~~~a~~~L~~La~~~~~~~~~i~~ 360 (560)
-+|-|+...+.+.+.+.++.+++++.+.+.. +.-...-..+-+|.++.+.+|..+++
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8999999999999999999999998765421 23334455677888888888877755
No 138
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.30 E-value=0.019 Score=46.60 Aligned_cols=64 Identities=17% Similarity=0.347 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhc--cCChHHHHHHHHHHHHhcC-CchhHHHHHh
Q 008585 254 KEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQ--TGDSVSQAAAACTLKNISA-VPEVRQMLAE 317 (560)
Q Consensus 254 ~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~--~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e 317 (560)
+.....+|.+|+.. +.++..+.+.||++.++..|. +.+|-++.+|..+++||+. ++++++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45677899999874 888999999999999999986 4689999999999999996 6689888876
No 139
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.36 Score=45.85 Aligned_cols=104 Identities=24% Similarity=0.264 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc-
Q 008585 335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA- 411 (560)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~- 411 (560)
.-++.+...|.|+-. +.. +..+.+-+.. .-.|-.+..+++.|-. .-.|+.|.+.|..
T Consensus 171 ~~Ry~amF~LRn~g~--Eea---------I~al~~~l~~~SalfrhEvAfVfGQl~s---------~~ai~~L~k~L~d~ 230 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGT--EEA---------INALIDGLADDSALFRHEVAFVFGQLQS---------PAAIPSLIKVLLDE 230 (289)
T ss_pred HHHHhhhhHhhccCc--HHH---------HHHHHHhcccchHHHHHHHHHHHhhccc---------hhhhHHHHHHHHhh
Confidence 346667777777643 221 3333333322 3356677777777743 3358888888865
Q ss_pred -CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585 412 -GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (560)
Q Consensus 412 -~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L 468 (560)
.++-|+..|+.+|+.++.. .+++.|.+.+....+-+++.+..+|-.+
T Consensus 231 ~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 5699999999999999853 5678888888888788888888877665
No 140
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.24 E-value=1.3 Score=49.73 Aligned_cols=216 Identities=15% Similarity=0.187 Sum_probs=134.0
Q ss_pred HhhCCCHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhh----cCC----HHHHHHHH
Q 008585 192 VMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE----SGS----TVGKEKAT 258 (560)
Q Consensus 192 i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~----~~~----~~~~~~a~ 258 (560)
+.+.||+..+++++.+- ....-...+..|...+.-..+|+.+++.|+++.|+..+. ... ..+-+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 44679999999998763 245566677888888888889999999999999999875 323 56666666
Q ss_pred HHHHHhhCChhh--H---HHHHhCC-----C---hHHHHHHhcc----CChHHHHHHHHHHHHhcCCc-hhHHHHHhcCc
Q 008585 259 ISLQRLSMSAEM--A---RAIVGHG-----G---VRPLIEICQT----GDSVSQAAAACTLKNISAVP-EVRQMLAEEGI 320 (560)
Q Consensus 259 ~~L~~La~~~~~--~---~~l~~~g-----~---i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~ 320 (560)
.++..+...... . ....... . +..|++.+.+ .++.+....+++|-+|+..+ +.-+.+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 666666432111 1 1111122 2 4556665554 36788889999999999754 433444331
Q ss_pred HHHHHHHh--hcCCchhHHHHHHHHHHHHccCC------hhHHHHHHhCCCHHHHHHhccC--Cc---------------
Q 008585 321 VSVMIKLL--DCGILLGSKEYAAECLQNLTASN------ENLRRSVVSEGGIRSLLAYLDG--PL--------------- 375 (560)
Q Consensus 321 v~~L~~lL--~~~~~~~v~~~a~~~L~~La~~~------~~~~~~i~~~g~l~~L~~ll~~--~~--------------- 375 (560)
+...+++= +.....+- ..-+.+++.++.+- ..+++.+++.|++...+.+|.. |.
T Consensus 271 F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 12222221 11111011 23367777776622 3678999999999999888843 21
Q ss_pred -cHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhc
Q 008585 376 -PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKA 411 (560)
Q Consensus 376 -~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~ 411 (560)
....++..|.-|+. ....+.++..+++ ++++.|..
T Consensus 350 psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEq 386 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQ 386 (802)
T ss_pred CcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhc
Confidence 23567888888887 3333444556666 66666654
No 141
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.24 E-value=0.62 Score=46.98 Aligned_cols=206 Identities=11% Similarity=0.083 Sum_probs=145.2
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhh-----HHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHH
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEM-----ARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKN 304 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~-----~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~n 304 (560)
.+...+.+..|+..|..-+-+.+..++.+..++-.. .+. ...+.. ..-..+..++.. ++|++-..+-..|+.
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 455668899999999999999999999999888553 222 223332 212223333332 466777788888999
Q ss_pred hcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHH
Q 008585 305 ISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGAL 384 (560)
Q Consensus 305 La~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L 384 (560)
...++...+.+.+...+..+++.+..++- ++...|..++..+-..+.......+.
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~F-diasdaf~t~~~llt~hk~~~a~fl~------------------------ 204 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNF-DIASDAFSTFKELLTRHKKLVAEFLS------------------------ 204 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSH-HHHHHHHHHHHHHHHSSHHHHHHHHH------------------------
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCcc-HhHHHHHHHHHHHHhccHHHHHHHHH------------------------
Confidence 99999999999998899999999998886 88888999988877655543221110
Q ss_pred HHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHH----HHHHhcCCHHHHHHHHccCCHHHHHH
Q 008585 385 RNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMK----KLVGEAGCTPLLIKLLEAKPNSVREV 460 (560)
Q Consensus 385 ~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~----~~i~~~g~i~~Lv~ll~s~~~~v~~~ 460 (560)
.+- ..++.....+|.+++.-+++.+...|+.+-.+..+. +++.+..-+..++.++.+++..+|..
T Consensus 205 ------~n~-----d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~e 273 (335)
T PF08569_consen 205 ------NNY-----DRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFE 273 (335)
T ss_dssp ------HTH-----HHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHH
T ss_pred ------HHH-----HHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHH
Confidence 111 235677888999999999999999999998765543 34444567889999999999999999
Q ss_pred HHHHHHHhcCCChh
Q 008585 461 AAQAISSLVTLPQN 474 (560)
Q Consensus 461 A~~aL~~L~~~~~~ 474 (560)
|-.+.--...+|..
T Consensus 274 AFhvFKvFVANp~K 287 (335)
T PF08569_consen 274 AFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHH-SS-
T ss_pred HHHHHHHHHhCCCC
Confidence 99999888755443
No 142
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.21 E-value=0.069 Score=50.86 Aligned_cols=143 Identities=19% Similarity=0.230 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHHHhh
Q 008585 174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLV 246 (560)
Q Consensus 174 A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL 246 (560)
|+.-|.-++ .+|+.+..+.++...-.|..+|+..+ ..+|-.++.+++.+...++ .-..+.+.+.+|..++.+
T Consensus 70 aLaLlQ~vA-shpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 70 ALALLQCVA-SHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHH-H-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHH-cChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 343344444 47889999999888878888887654 5678889999999988654 677888999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhCChhhHHHHHh--------CCChHHHH-HHhccCChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585 247 ESGSTVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (560)
Q Consensus 247 ~~~~~~~~~~a~~~L~~La~~~~~~~~l~~--------~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (560)
+.++.-.+..|..++.++-.++..-..+.+ ..++..++ .+..++++.+.++..++-..|+.++..+..+..
T Consensus 149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 149 EFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999999999999777765444432 12223333 334567889999999999999999988887764
No 143
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.1 Score=56.72 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=148.4
Q ss_pred ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHH-HhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHH
Q 008585 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK-NISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ 345 (560)
Q Consensus 267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~-nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~ 345 (560)
...-+...++.|+...|+.++..+.+..+..+..+|. .+.. +..+. ...++.+.+.+......--.+.++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3444556778999999999999989999988888887 2221 11110 1244555555544332223456788888
Q ss_pred HHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 008585 346 NLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC 425 (560)
Q Consensus 346 ~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (560)
||++.++..|+.+.+ ...++.+-.++-..++..|..++..+.
T Consensus 568 nLas~s~s~r~~i~k--------------------------------------e~~~~~ie~~~~ee~~~lqraa~e~~~ 609 (748)
T KOG4151|consen 568 NLASISESDRQKILK--------------------------------------EKALGKIEELMTEENPALQRAALESII 609 (748)
T ss_pred cccCcchhhHHHHHH--------------------------------------HhcchhhHHHhhcccHHHHHHHHHHHH
Confidence 888877766654443 223333444556778899999999999
Q ss_pred HHhCChhH-HHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHH-HhhhCCChHHHHhccCCCCchhhHH
Q 008585 426 RVCTSAEM-KKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCRE-VKRDDKSVPNLVQLLDPSPQNTAKK 502 (560)
Q Consensus 426 ~La~~~~~-~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~-~~~~~~~v~~Lv~lL~~~~~~~~~~ 502 (560)
||.-++.. .+.+++ ....+.....+....+.....++.++..++....|+.. ......+...++.++.+.+.....
T Consensus 610 NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qh- 688 (748)
T KOG4151|consen 610 NLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQH- 688 (748)
T ss_pred HHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhh-
Confidence 99876543 445555 34567666666666667778888888878776666544 555556678888888887554444
Q ss_pred HHHHHHHHhCC-ChhhHHHHHHcChhHHHHHhhccCc
Q 008585 503 YAVACLASLSP-SKKCKKLMISYGAIGYLKKLSEMDI 538 (560)
Q Consensus 503 ~a~~~L~~L~~-~~~~r~~i~~~g~i~~L~~L~~~~~ 538 (560)
..+.+..++.. ..+....+.....++.+..+...+.
T Consensus 689 rgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 689 RGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred hhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 44444444543 4467777778888887777766644
No 144
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.16 E-value=0.16 Score=51.15 Aligned_cols=222 Identities=12% Similarity=0.101 Sum_probs=161.9
Q ss_pred HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh-----HHHHHHh--CCCHHHHHHhccCCccHHHHHHHHH
Q 008585 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN-----LRRSVVS--EGGIRSLLAYLDGPLPQESAVGALR 385 (560)
Q Consensus 313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~-----~~~~i~~--~g~l~~L~~ll~~~~~~~~a~~~L~ 385 (560)
..+...+.+..++..|..-+- +.+..+..+..++.....+ ..+++.. ...+..|+..-++++.-..+-..|+
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~f-EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDF-ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-H-HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCC-cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 455567899999999988885 8899999999998874322 2344543 3467777777788999999999999
Q ss_pred Hhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH-hCChhHHHHHHhcC---CHHHHHHHHccCCHHHHHH
Q 008585 386 NLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV-CTSAEMKKLVGEAG---CTPLLIKLLEAKPNSVREV 460 (560)
Q Consensus 386 nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L-a~~~~~~~~i~~~g---~i~~Lv~ll~s~~~~v~~~ 460 (560)
.++. +...+.+.....+..+.+.++.++-++...|..++..+ ..+......+...+ +......++.+++--+|..
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 9998 45567777888899999999999999999999999985 46666655555544 5678888999999999999
Q ss_pred HHHHHHHhcCCChhhH---HHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh----hhHHHHHH--cChhHHHH
Q 008585 461 AAQAISSLVTLPQNCR---EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK----KCKKLMIS--YGAIGYLK 531 (560)
Q Consensus 461 A~~aL~~L~~~~~~~~---~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~----~~r~~i~~--~g~i~~L~ 531 (560)
++..|..|..+..|.. .++.+...+..++.+|.+.. ..++-.|..++-...-+| ..+..+.. ...+.+|.
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~ 307 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLK 307 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999998888865 55656677788888998863 346777887776555322 34444432 45666777
Q ss_pred Hhhcc
Q 008585 532 KLSEM 536 (560)
Q Consensus 532 ~L~~~ 536 (560)
+....
T Consensus 308 ~f~~~ 312 (335)
T PF08569_consen 308 DFHTD 312 (335)
T ss_dssp TTTTT
T ss_pred hCCCC
Confidence 66533
No 145
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.08 E-value=0.15 Score=44.95 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=97.4
Q ss_pred HHHHhCCCHHHHHHhhhcCC------HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC--ChHHHHHHHHHH
Q 008585 231 NWLVSEGVLPPLIRLVESGS------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DSVSQAAAACTL 302 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~------~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL 302 (560)
..+++.||++.|+++++++. .....++..++..|-.+.-..|.......+..++...... ++.+...++..|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45778899999999999876 3667788888888887776678888888888888888753 678889999999
Q ss_pred HHhcCCch-hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585 303 KNISAVPE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (560)
Q Consensus 303 ~nLa~~~~-~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~ 352 (560)
-++..+.. ....+.++=-++.|+..|...+. +++.++...+-.|....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~-~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQ-EIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcCC
Confidence 99987654 45666666679999999999776 899999988888876333
No 146
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=0.09 Score=57.39 Aligned_cols=344 Identities=12% Similarity=0.112 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH------HHhCCCHHHH
Q 008585 169 EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW------LVSEGVLPPL 242 (560)
Q Consensus 169 ~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~------l~~~g~i~~L 242 (560)
...-++++-|+.|+.++ +....+++.|||..|+..=.-+. .-.-.-.+|..++.....-+. .+-..++..-
T Consensus 368 ~l~~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~vpr~s~--~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~ 444 (1516)
T KOG1832|consen 368 PLLPDVMKLICALAAHR-KFAAMFVERRGILKLLAVPRVSE--TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLA 444 (1516)
T ss_pred cccHHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcCCCchh--hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHH
Confidence 33456777777777643 45667788899888776533221 111122345555544432221 1222345555
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC--------C---h--------HHHHHHHHHHH
Q 008585 243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--------D---S--------VSQAAAACTLK 303 (560)
Q Consensus 243 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~--------~---~--------~~~~~a~~aL~ 303 (560)
+.+|.......+..++.....--.-...-..|-...+++.|+.++++- + + ..-...|.+|+
T Consensus 445 ~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR 524 (1516)
T KOG1832|consen 445 IELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALR 524 (1516)
T ss_pred HHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHH
Confidence 666766544444444333222111122334455577788888887631 1 1 12245566666
Q ss_pred Hhc------CCchhHHHHHhcCcHHHHHHHhhcCCc-h----hHHHHHHHHHHHHccCCh-------hHHHHHHhCCCHH
Q 008585 304 NIS------AVPEVRQMLAEEGIVSVMIKLLDCGIL-L----GSKEYAAECLQNLTASNE-------NLRRSVVSEGGIR 365 (560)
Q Consensus 304 nLa------~~~~~~~~i~e~g~v~~L~~lL~~~~~-~----~v~~~a~~~L~~La~~~~-------~~~~~i~~~g~l~ 365 (560)
.-- ..+.+++.-...+.++..++-+..+.. . ...+..++-+..+....+ .-.+.+.+.+++.
T Consensus 525 ~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~ 604 (1516)
T KOG1832|consen 525 QYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVV 604 (1516)
T ss_pred HHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHH
Confidence 432 133334444445555555553332211 1 222333333333222111 1134456678888
Q ss_pred HHHHhccC----------CccHHHHHHHHHHhhc-cccHHHHHhC--------CcHHHHHHHHhc----CCHHHHHHHHH
Q 008585 366 SLLAYLDG----------PLPQESAVGALRNLVG-SVSQEVLISL--------GFFPRLVHVLKA----GSLGAQQAAAS 422 (560)
Q Consensus 366 ~L~~ll~~----------~~~~~~a~~~L~nla~-~~~~~~l~~~--------~~i~~Lv~lL~~----~~~~v~~~A~~ 422 (560)
.++++..- .+....|+++|..+.. +..+.++... .++..++..-.. .++++++.|+.
T Consensus 605 ~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~ 684 (1516)
T KOG1832|consen 605 TMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALN 684 (1516)
T ss_pred HHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHh
Confidence 88888643 1234455555555554 5555554221 134444433321 36999999999
Q ss_pred HHHHHhCC-hhHHHHHHhc-C---CHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC--
Q 008585 423 ALCRVCTS-AEMKKLVGEA-G---CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS-- 495 (560)
Q Consensus 423 aL~~La~~-~~~~~~i~~~-g---~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-- 495 (560)
+|-|+.+. |+++...+.. | +-+...---.++.. . --..|..+ ...++..+++..|+.||+-.
T Consensus 685 vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~-~---le~~l~~m-------w~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 685 VIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSA-K---LEQVLRQM-------WEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred hhheeecCCCCcchhhhhhccccCCCccccccCCCchH-H---HHHHHHHH-------HHHHhcCccHHHHHHHHhccCC
Confidence 99999877 4776655322 1 11110000011111 1 11222222 44556678889999998765
Q ss_pred --CchhhHHHHHHHHHHhCCChhhHHHHHHcCh
Q 008585 496 --PQNTAKKYAVACLASLSPSKKCKKLMISYGA 526 (560)
Q Consensus 496 --~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~ 526 (560)
+.+.++..|+.+|.-|++++..|..+.+--.
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDDTVRQILTKLPL 786 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCcHHHHHHHhCcc
Confidence 2345888999999999999999988766433
No 147
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.01 E-value=0.1 Score=45.95 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=92.8
Q ss_pred HHHHHhCCChHHHHHHhccCC------hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCC-chhHHHHHHHH
Q 008585 271 ARAIVGHGGVRPLIEICQTGD------SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI-LLGSKEYAAEC 343 (560)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~~~------~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~-~~~v~~~a~~~ 343 (560)
+.+|...||+..|++++.+++ .+....++.++.+|-.+.-+.-...+...|..++.++.... +..+...|+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 567889999999999998865 36778888899888876554555666667888888887544 34789999999
Q ss_pred HHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585 344 LQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (560)
Q Consensus 344 L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~ 389 (560)
|.++..+++.....+.+.=-++.|+..++. +.++.+++..|-.|-.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 999999888877777777778888888865 4567777777777765
No 148
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.00 E-value=0.27 Score=49.16 Aligned_cols=185 Identities=20% Similarity=0.218 Sum_probs=111.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC--ChhHHH
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS--NENLRR 356 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~--~~~~~~ 356 (560)
...+..+.+.....|..++..+.++....-....+.+ ...+..+.+.++.+.. +-+..|+.++.-++-. ......
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHH
Confidence 3445555667788889999988888643222233322 3367778888888876 5566677777666553 122233
Q ss_pred HHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhc--cccHHHHH-hCCcHHHH--HHHHhc----------CCHHHH
Q 008585 357 SVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLI-SLGFFPRL--VHVLKA----------GSLGAQ 417 (560)
Q Consensus 357 ~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~--~~~~~~l~-~~~~i~~L--v~lL~~----------~~~~v~ 417 (560)
.+++ ...+.|.+.+.+ +..+..++.+|+-+++ ......+. -...+..+ ....+. +++.+.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 4443 245677777754 3456677777777776 22222111 01223311 122221 125677
Q ss_pred HHHHHHHHHHhCC-hh--HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 418 QAAASALCRVCTS-AE--MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 418 ~~A~~aL~~La~~-~~--~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
..|+.+-+-|... +. ....+ ...++.|+.+|.+.+.+||..|-++|+-|.
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7887777777644 32 33222 345999999999999999999999999885
No 149
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=3.1 Score=45.36 Aligned_cols=318 Identities=16% Similarity=0.135 Sum_probs=187.8
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
...++...++|...++-+|+.|.-++..+-+..+ .++ .++-+.+-+.| ...++..+..|...|.... ++.
T Consensus 133 epl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D--~Er-- 203 (948)
T KOG1058|consen 133 EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTD--PER-- 203 (948)
T ss_pred hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcC--HHH--
Confidence 4457777788888888999999888877765422 111 13344444444 4456788888776554432 221
Q ss_pred HHHhCCCHHHHHHhh---hcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 232 WLVSEGVLPPLIRLV---ESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
++..+.... .+-++..+......+...+.. +.-+..+ ++.+..+|.+.++.++..|+.+|.+|+.
T Consensus 204 ------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~ 272 (948)
T KOG1058|consen 204 ------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSN 272 (948)
T ss_pred ------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccC
Confidence 122222222 222456666667777777663 3333333 4889999999999999999999999998
Q ss_pred CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC--ccHHHHHHHHH
Q 008585 308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALR 385 (560)
Q Consensus 308 ~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~--~~~~~a~~~L~ 385 (560)
+|..-+. +..+++.++.+..+-.++-..+.-|..+...++..- .|.+--++++|++| +++..++....
T Consensus 273 ~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il-----~~l~mDvLrvLss~dldvr~Ktldi~l 342 (948)
T KOG1058|consen 273 DPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKIL-----QGLIMDVLRVLSSPDLDVRSKTLDIAL 342 (948)
T ss_pred CHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHH-----HHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 7755443 345666766554433566666666666664433322 23355567777765 56888888877
Q ss_pred HhhccccHHHHHhCCcHHHHHH-HHhc------CCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHH
Q 008585 386 NLVGSVSQEVLISLGFFPRLVH-VLKA------GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSV 457 (560)
Q Consensus 386 nla~~~~~~~l~~~~~i~~Lv~-lL~~------~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v 457 (560)
-|....+.+.+ +..|-. +.+. .+..-++.-..+++.++.. ++....+ ++.|++++.+.++..
T Consensus 343 dLvssrNvedi-----v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv-----V~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 343 DLVSSRNVEDI-----VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV-----VSLLLDFISDSNEAA 412 (948)
T ss_pred hhhhhccHHHH-----HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH-----HHHHHHHhccCCHHH
Confidence 77764333222 111111 1111 2345678888899988854 7776555 899999999888765
Q ss_pred HHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585 458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515 (560)
Q Consensus 458 ~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 515 (560)
....+..+......-++.+..+ +..|+.-+..--....-..+++++..-|...
T Consensus 413 as~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 413 ASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 5555555555544444433322 2444433322111134556677776655433
No 150
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=3.2 Score=47.11 Aligned_cols=305 Identities=16% Similarity=0.135 Sum_probs=168.9
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCchHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~ 231 (560)
.+.+..|+..|...+..++..|++.+..+....|.. +++ ..+...++++...+ +..-..|+-+|..|+...=...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 466777888888999999999999999999988833 222 34555566554433 5556688889999987642111
Q ss_pred HHHhCCCHHHHHHhhhcC--------CHHHHHHHHHHHHHhhCChhhH--HHHHhCCChHH-HHHHhccCChHHHHHHHH
Q 008585 232 WLVSEGVLPPLIRLVESG--------STVGKEKATISLQRLSMSAEMA--RAIVGHGGVRP-LIEICQTGDSVSQAAAAC 300 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~La~~~~~~--~~l~~~g~i~~-Lv~ll~~~~~~~~~~a~~ 300 (560)
... ..++|.+++.|.-+ ...+|..|+.+++.++...+.. ..+.+ ...+. |+..+=+.+-..|+.|..
T Consensus 416 s~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence 111 13566666666432 4458888888888887643222 21211 11111 222233455567777777
Q ss_pred HHHHhcCC--------------------------chhHHHHHh-cCcHHHHHHHhhcC-----CchhHHHHHHHHHHHHc
Q 008585 301 TLKNISAV--------------------------PEVRQMLAE-EGIVSVMIKLLDCG-----ILLGSKEYAAECLQNLT 348 (560)
Q Consensus 301 aL~nLa~~--------------------------~~~~~~i~e-~g~v~~L~~lL~~~-----~~~~v~~~a~~~L~~La 348 (560)
|+-..... ...+..+.+ +|....+++-+-.. +. .+++.++.+|.+|+
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~-~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDV-KIRELAAYALHKLS 572 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccH-HHHHHHHHHHHHHH
Confidence 77654321 112333444 45555555443322 33 78999999999988
Q ss_pred cCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc----cc-cHHHHHh---CC---cHHHHHH-HHhcCC-
Q 008585 349 ASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG----SV-SQEVLIS---LG---FFPRLVH-VLKAGS- 413 (560)
Q Consensus 349 ~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~----~~-~~~~l~~---~~---~i~~Lv~-lL~~~~- 413 (560)
...+. ....+.+++++....+ ...+..+.-+.+.+.. -. ....+.+ .+ .++++.. ....+.
T Consensus 573 ~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~ 648 (1133)
T KOG1943|consen 573 LTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG 648 (1133)
T ss_pred HhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchH
Confidence 65442 3445677888777655 3334433333333322 01 0000000 11 2333332 222221
Q ss_pred HHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 414 LGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 414 ~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.-.+...+..+.++.-+ ......+.-.+.-..+.+.+...+ .+|..|..++..++
T Consensus 649 ~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~ 704 (1133)
T KOG1943|consen 649 TLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLV 704 (1133)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHH
Confidence 34455566667776644 344444444454555555553343 78888888888887
No 151
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.97 E-value=0.031 Score=45.26 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChH
Q 008585 214 EKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV 293 (560)
Q Consensus 214 ~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~ 293 (560)
..++.+|...+..-...-.-.-...+++++..+.+.+..+|.+|+.+|.+++..........=...+..|.+++.+.++.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 34555555554432211111122379999999999999999999999999976432211111245668888888888888
Q ss_pred HHHHHHHHHHH
Q 008585 294 SQAAAACTLKN 304 (560)
Q Consensus 294 ~~~~a~~aL~n 304 (560)
+|..| ..|-+
T Consensus 84 Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 84 VRSAA-ELLDR 93 (97)
T ss_pred HHHHH-HHHHH
Confidence 87665 44433
No 152
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.83 E-value=0.47 Score=53.97 Aligned_cols=294 Identities=14% Similarity=0.102 Sum_probs=145.6
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-C---hhhHH
Q 008585 198 IAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-S---AEMAR 272 (560)
Q Consensus 198 v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~---~~~~~ 272 (560)
++.+...+++= ....+..|+..|..++..-.....+ ..++|.++.++.+....+|..|..+|..+-. . +..-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 45555555442 3678889999999998765422222 2379999999999999999999999888732 1 11222
Q ss_pred HHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC
Q 008585 273 AIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN 351 (560)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~ 351 (560)
.+.-.=.+|.|-.++.+ ....+|..-+..|..||.. .-.|.+.+--.....++++.+. + ...+. ..+
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~~ns-e-------t~~~~-~~~ 569 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLNDPNS-E-------TAPEQ-NYN 569 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccCccc-c-------ccccc-ccc
Confidence 23333445667777766 3344555555556555531 1112111111111111222221 1 00000 001
Q ss_pred hhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585 352 ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (560)
Q Consensus 352 ~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~ 429 (560)
.+ .+.+ ..++-+....++.+ +-++..-+..|.-||..-.++. ...-.++.|+.+|+..|..++..-...|.-++.
T Consensus 570 ~~-~~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi 646 (1431)
T KOG1240|consen 570 TE-LQAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK-SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSI 646 (1431)
T ss_pred hH-HHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc-cccchHHHHHHHhcCccHHHHHHHHhhccceEE
Confidence 11 1111 11112223334433 2344444555666654101100 012347777888877777766655554444332
Q ss_pred ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHH
Q 008585 430 SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA 509 (560)
Q Consensus 430 ~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~ 509 (560)
.-.-+ -.+++.+|.|.+-+.+..+-|...|+++|..|+...--++..+. +.+.....+|-. |..-++..++.++.
T Consensus 647 ~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~h-PN~WIR~~~~~iI~ 721 (1431)
T KOG1240|consen 647 FVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCH-PNLWIRRAVLGIIA 721 (1431)
T ss_pred EEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeC-chHHHHHHHHHHHH
Confidence 21100 01234577777777777777777788877777632222222221 111222222222 22356777777666
Q ss_pred HhCC
Q 008585 510 SLSP 513 (560)
Q Consensus 510 ~L~~ 513 (560)
....
T Consensus 722 ~~~~ 725 (1431)
T KOG1240|consen 722 AIAR 725 (1431)
T ss_pred HHHh
Confidence 5543
No 153
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.82 E-value=3 Score=43.75 Aligned_cols=337 Identities=15% Similarity=0.102 Sum_probs=187.9
Q ss_pred HHHHHHHccCCH---HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc----
Q 008585 157 RELLARLQIGHL---EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS---- 228 (560)
Q Consensus 157 ~~Ll~~L~~~~~---~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~---- 228 (560)
+.+++.|...+. ......+..|..++...+-....+. ..+..+-..++.. +.+.....+..|..+.....
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~--~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI--RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 345555544443 4566788888888864442221111 3344444444332 35555666666666654332
Q ss_pred --hHHHHHhCCCHHHHHHhhhcC-------CHHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhc---------
Q 008585 229 --CENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQ--------- 288 (560)
Q Consensus 229 --~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~--------- 288 (560)
......+..+++.+.++.-.. +..+...+..++..+.. +.+.+..++ ..+..+.-
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCCC
Confidence 233444555777777765332 24555556666666544 344444443 33333332
Q ss_pred -cC------ChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC--hhHHHHHH
Q 008585 289 -TG------DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN--ENLRRSVV 359 (560)
Q Consensus 289 -~~------~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~--~~~~~~i~ 359 (560)
.. ..........++..+-.+-... .. ...+..++.+..+.++...+..++.+++.+...- +..-+
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--- 228 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--- 228 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence 01 1122233344454443321111 11 1267777777665554478899999999888742 22111
Q ss_pred hCCCHHHHHHhcc---CCccHHHHHHHHHHhhc----cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-h
Q 008585 360 SEGGIRSLLAYLD---GPLPQESAVGALRNLVG----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-A 431 (560)
Q Consensus 360 ~~g~l~~L~~ll~---~~~~~~~a~~~L~nla~----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~ 431 (560)
..+..+...+. .+..+..++.++.-++. ...+. ...++..|+.++.+ +++...++.++.-+..+ +
T Consensus 229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~---~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~ 301 (415)
T PF12460_consen 229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL---ATELLDKLLELLSS--PELGQQAAKAFGILLSDSD 301 (415)
T ss_pred --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch---HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH
Confidence 12333333331 13445555555544443 11111 12357777787766 77788899999988766 3
Q ss_pred hH-------------HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCch
Q 008585 432 EM-------------KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQN 498 (560)
Q Consensus 432 ~~-------------~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~ 498 (560)
+. ++.+.. ..+|.|++..+..+.+.+.....||.++..+-+..--.-.-...++.+++-|+..+.
T Consensus 302 ~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~- 379 (415)
T PF12460_consen 302 DVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDA- 379 (415)
T ss_pred HhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCH-
Confidence 32 333322 358889888888777789999999999997765432222223556778888876543
Q ss_pred hhHHHHHHHHHHhCCCh
Q 008585 499 TAKKYAVACLASLSPSK 515 (560)
Q Consensus 499 ~~~~~a~~~L~~L~~~~ 515 (560)
.++..++.++..+..+.
T Consensus 380 ~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 380 DVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 57888888888776544
No 154
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.73 E-value=1.6 Score=43.75 Aligned_cols=193 Identities=17% Similarity=0.194 Sum_probs=118.6
Q ss_pred hhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHh--hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-
Q 008585 150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLLTATSPRIREKTVTVICSLAES- 226 (560)
Q Consensus 150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~- 226 (560)
+.....+...+..+.......|..++..+..++....-. ..+. ....+..+.+.++.+..+-+..|+.++..++-.
T Consensus 39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 333444677788888788899999999999998654322 1121 123477788888888776677788888888665
Q ss_pred --CchHHHHHhCCCHHHHHHhhhcCC--HHHHHHHHHHHHHhhC----ChhhHHHHHhCCChHHHHH--Hhc--------
Q 008585 227 --GSCENWLVSEGVLPPLIRLVESGS--TVGKEKATISLQRLSM----SAEMARAIVGHGGVRPLIE--ICQ-------- 288 (560)
Q Consensus 227 --~~~~~~l~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~La~----~~~~~~~l~~~g~i~~Lv~--ll~-------- 288 (560)
.+....+++ ...|.|.+++.+++ ...|..++.+|.-++. +++...... ..+..+.. ..+
T Consensus 118 g~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 118 GAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred CCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccc
Confidence 123334443 36788888888764 4556666666666533 222222111 01111111 111
Q ss_pred --cCChHHHHHHHHHHHHhcC-Cchh-HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585 289 --TGDSVSQAAAACTLKNISA-VPEV-RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (560)
Q Consensus 289 --~~~~~~~~~a~~aL~nLa~-~~~~-~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La 348 (560)
.+++.+...|+.+..-|.. .+.. ..... ...++.|..+|.+++. +||..|.++|.-|.
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~-~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDV-DVRIAAGEAIALLY 256 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHH
Confidence 1235677777777666653 3331 12222 3478999999999886 89999988887664
No 155
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.72 E-value=1.2 Score=40.66 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh
Q 008585 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV 246 (560)
Q Consensus 167 ~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL 246 (560)
++.+|..++..+..++..-+. +++ ..++.+...|+++++.+|..|+.+|..|...+-.+- +...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence 467888999999999976662 222 468899999999999999999999999987653211 111347888899
Q ss_pred hcCCHHHHHHHHHHHHHhhCC
Q 008585 247 ESGSTVGKEKATISLQRLSMS 267 (560)
Q Consensus 247 ~~~~~~~~~~a~~~L~~La~~ 267 (560)
.++++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999775
No 156
>PRK14707 hypothetical protein; Provisional
Probab=95.70 E-value=5.7 Score=48.41 Aligned_cols=368 Identities=15% Similarity=0.145 Sum_probs=199.7
Q ss_pred cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-CC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHH
Q 008585 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-AT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPL 242 (560)
Q Consensus 165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L 242 (560)
..+.....+|+.-+...+...++.+..+ ..-.+..+++-.+ .+ +.+.+..+......++.++..+..+ ...+|..+
T Consensus 133 ~~~~~~c~~a~a~i~~~~~~~~~~~~~l-~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~ 210 (2710)
T PRK14707 133 NLDSGRCERAVARLARHLRREDKARQTL-NAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATV 210 (2710)
T ss_pred CCCchHHHHHHHHHHHHhccccchhhhh-ccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHH
Confidence 3344455566655555554334332222 1223666666554 33 4777777777777777776655555 33356666
Q ss_pred HHhhhc--CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHHhcCCchhHHHHHhcC
Q 008585 243 IRLVES--GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVPEVRQMLAEEG 319 (560)
Q Consensus 243 v~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~~~~~~i~e~g 319 (560)
++.+.. +++..+..+...-..++.+..-+..+-..|+-..|-.+++-++. .....+..+=..++.++..++.+...+
T Consensus 211 lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~ 290 (2710)
T PRK14707 211 LNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN 290 (2710)
T ss_pred HHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH
Confidence 666654 45666665555555566655444444334444444444554444 444444444445666667777766544
Q ss_pred cHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhcc-ccHH
Q 008585 320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGS-VSQE 394 (560)
Q Consensus 320 ~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~-~~~~ 394 (560)
.-..+-.+-+-++. .+...+...|..=-.+++..++. .+.-++...+..|.. ...+..+......++.+ ...+
T Consensus 291 vanalNalSKwpd~-~vc~~Aa~~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~ 368 (2710)
T PRK14707 291 VTQALNALSKWADL-PVCAEAAIALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK 368 (2710)
T ss_pred HHHHHhhhhcCCCc-hHHHHHHHHHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc
Confidence 44444444444554 56555555554444445665532 233345556666654 33455666666666653 2332
Q ss_pred HHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHH-HHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 008585 395 VLISLGFFPRLVHVLKA-GSLGAQQAAASALC-RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472 (560)
Q Consensus 395 ~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~-~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~ 472 (560)
.+ +...+...++.|.. ++..+-..|+.+|. .+..+++.++.|--.|+-..|-.+-+=++..+...++.+|..-..++
T Consensus 369 ~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d 447 (2710)
T PRK14707 369 DL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHD 447 (2710)
T ss_pred cc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhcc
Confidence 22 34446666666654 44445455555554 67788999999977775555555545455556666666665554444
Q ss_pred hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHH-HHhCCChhhHHHHHHcChhHHHHHhhccCc
Q 008585 473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL-ASLSPSKKCKKLMISYGAIGYLKKLSEMDI 538 (560)
Q Consensus 473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L-~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~ 538 (560)
....+-+. ...|...+..+..=|++..-..+...| ..|+...+.++.|--.+....|-.|.+-.+
T Consensus 448 ~~l~~~~~-p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd 513 (2710)
T PRK14707 448 TELCKALD-PINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPD 513 (2710)
T ss_pred HHHHhhcC-hHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCC
Confidence 44333232 223444555554434444333444444 477777777777776676667766665555
No 157
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.70 E-value=0.042 Score=44.55 Aligned_cols=67 Identities=25% Similarity=0.204 Sum_probs=49.4
Q ss_pred CCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNL 347 (560)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L 347 (560)
...+++++..+.++++.+|..|+.+|.|++..- +..+.. ..++..+.+++.+.++ .|+..| ..|-++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d~-~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPDE-NVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCch-hHHHHH-HHHHHH
Confidence 345689999999999999999999999998632 223322 4578888888888886 666554 555444
No 158
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.57 E-value=2.7 Score=46.71 Aligned_cols=216 Identities=15% Similarity=0.101 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh
Q 008585 209 SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC 287 (560)
Q Consensus 209 ~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll 287 (560)
.|...-.+..++...+.....-..+... .+...++.+. +..+.++..|+++++.-+..... .-...++++.|+.+.
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl--~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVL--LSLQPMILDGLLQLA 539 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCceec--cccchHHHHHHHHHc
Confidence 3666667777777665542211111111 1222333333 34556777777777766521111 111356677788888
Q ss_pred ccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh-cCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585 288 QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS 366 (560)
Q Consensus 288 ~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~-~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~ 366 (560)
...+.++......+|+.++..+.-.....++.+.|.++.++- ..+++.+...+-.++..++.. ..+.. -..+-.+|.
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g-~m~e~~iPs 617 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYG-PMQERLIPS 617 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhc-chHHHHHHH
Confidence 778888999999999999875443444445667777777754 333335666666666666541 11111 112234889
Q ss_pred HHHhccC------CccHHHHHHHHHHhhc---cccHHHHHhCCcHHHHHHH-HhcCCHHHHHHHHHHHHHHhCC
Q 008585 367 LLAYLDG------PLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHV-LKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 367 L~~ll~~------~~~~~~a~~~L~nla~---~~~~~~l~~~~~i~~Lv~l-L~~~~~~v~~~A~~aL~~La~~ 430 (560)
++..++. +.....++.+|..+.+ ++-.+.+...- .+++.+. +.+++.++.+.+..+|..+...
T Consensus 618 lisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~-FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 618 LISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA-FPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH-hHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 9999864 3456788888888887 34444444443 4445443 4567889999999999988754
No 159
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.52 E-value=0.048 Score=45.55 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=60.2
Q ss_pred hhchHHHHHHHH-ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 008585 152 THGNTRELLARL-QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLA 224 (560)
Q Consensus 152 ~~~~i~~Ll~~L-~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La 224 (560)
....++.|+..| .+.++....-|+.-|.+++...|..+..+-+.|+-..+++++.+++++++.+|+.++..+-
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 455688899999 4556777888999999999999987777767788999999999999999999999998764
No 160
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.47 E-value=0.42 Score=47.68 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=106.5
Q ss_pred CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHH-------HHhcCCH
Q 008585 374 PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKL-------VGEAGCT 443 (560)
Q Consensus 374 ~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~-------i~~~g~i 443 (560)
+.+|+.++.+|+-+|. .... ....++.+...++.++..++..|+.++..+.. +.+.-.. ......+
T Consensus 41 ~~vR~~al~cLGl~~Lld~~~----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~ 116 (298)
T PF12719_consen 41 PAVRELALKCLGLCCLLDKEL----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLL 116 (298)
T ss_pred HHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHH
Confidence 5789999999999997 3211 12347778888877899999999999999873 2222111 1224567
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHH-hccCCCCc--hhhHHHHHHHHHHhCCChhhHHH
Q 008585 444 PLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLV-QLLDPSPQ--NTAKKYAVACLASLSPSKKCKKL 520 (560)
Q Consensus 444 ~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv-~lL~~~~~--~~~~~~a~~~L~~L~~~~~~r~~ 520 (560)
+.+.+.+.+.+++++..|++.++.|.....-.. ....+..|+ ...++... ...++.-...+-..+.+...++.
T Consensus 117 ~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~ 192 (298)
T PF12719_consen 117 KILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQE 192 (298)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888999999999999999985433322 012233333 44454422 23554444445577776666667
Q ss_pred HHHcChhHHHHHhhccCch
Q 008585 521 MISYGAIGYLKKLSEMDIP 539 (560)
Q Consensus 521 i~~~g~i~~L~~L~~~~~~ 539 (560)
.....+++.+..+.+...+
T Consensus 193 ~l~~~f~~~l~~~~~~~~~ 211 (298)
T PF12719_consen 193 RLAEAFLPTLRTLSNAPDE 211 (298)
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 7788999999999887664
No 161
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.43 E-value=0.12 Score=47.70 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHHhhCChhhHHHHHhC----------------CChHHHHHHhcc------CChHHHHHHHHHHHHh
Q 008585 248 SGSTVGKEKATISLQRLSMSAEMARAIVGH----------------GGVRPLIEICQT------GDSVSQAAAACTLKNI 305 (560)
Q Consensus 248 ~~~~~~~~~a~~~L~~La~~~~~~~~l~~~----------------g~i~~Lv~ll~~------~~~~~~~~a~~aL~nL 305 (560)
+.+......++..|.||+..++.+..+.+. ..+..|+..+.. ....--.+.+.+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 334446677888999999887777655542 245667766644 2234457889999999
Q ss_pred cCCchhHHHHHhc--Cc--HHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhC---CCHHHHHHhcc
Q 008585 306 SAVPEVRQMLAEE--GI--VSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE---GGIRSLLAYLD 372 (560)
Q Consensus 306 a~~~~~~~~i~e~--g~--v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~---g~l~~L~~ll~ 372 (560)
+..++.|+.+.+. +. +..|+.++++.+. .-|.-++.+|.|+|.+.+.. ..+... +.++.|+.-+.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~-iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV-IRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcH-HHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 9999999999983 34 6777777777754 56777899999999976553 444442 34555444443
No 162
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=1.7 Score=47.08 Aligned_cols=159 Identities=19% Similarity=0.120 Sum_probs=92.2
Q ss_pred CcHHHHHHHhhcCCchhHHHHHHHHHHHHcc-CChhHHHHHHhCCCHHHHHHh-ccC--CccHHHHHHHHHHhhccccHH
Q 008585 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVGSVSQE 394 (560)
Q Consensus 319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~~g~l~~L~~l-l~~--~~~~~~a~~~L~nla~~~~~~ 394 (560)
++=+.+-+++.+.++ -+|....-.+. ++. +..+ .+++..|+.+ +.+ .+++..|+-+|+-++..+
T Consensus 519 ~Ad~lI~el~~dkdp-ilR~~Gm~t~a-lAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d--- 586 (929)
T KOG2062|consen 519 DADPLIKELLRDKDP-ILRYGGMYTLA-LAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--- 586 (929)
T ss_pred hhHHHHHHHhcCCch-hhhhhhHHHHH-HHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecC---
Confidence 333444445555554 45555444333 222 1111 2346777777 333 679999999999888721
Q ss_pred HHHhCCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc-CCC
Q 008585 395 VLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV-TLP 472 (560)
Q Consensus 395 ~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~-~~~ 472 (560)
....+..+.+|. +.++.|+--++.+|+-.|.....+.++ ..|-.+...+..-||..|+.+++.+. .+.
T Consensus 587 ----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 587 ----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred ----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 113556666665 468999999999999988765555443 33333444555558999999998887 222
Q ss_pred hhhHHHhhhCCChHHHHhccCCCCchhhH
Q 008585 473 QNCREVKRDDKSVPNLVQLLDPSPQNTAK 501 (560)
Q Consensus 473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~ 501 (560)
+....-+. +....+.+.+.+..++...
T Consensus 657 ~~~~pkv~--~frk~l~kvI~dKhEd~~a 683 (929)
T KOG2062|consen 657 EQLCPKVN--GFRKQLEKVINDKHEDGMA 683 (929)
T ss_pred cccCchHH--HHHHHHHHHhhhhhhHHHH
Confidence 22111111 2235566666666444433
No 163
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.24 E-value=0.028 Score=46.94 Aligned_cols=71 Identities=14% Similarity=0.271 Sum_probs=60.6
Q ss_pred CcHHHHHHHHh-cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585 400 GFFPRLVHVLK-AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (560)
Q Consensus 400 ~~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~ 470 (560)
.++..|+++|. +.++.+...|+.=|+.+++. |+.+..+-+.|+-..+++++.+++++||..|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35888999994 46788888999999999965 8889888888999999999999999999999999988753
No 164
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.23 E-value=0.93 Score=43.54 Aligned_cols=97 Identities=19% Similarity=0.076 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhc-cCChHHHHHHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhh
Q 008585 253 GKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLD 329 (560)
Q Consensus 253 ~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~ 329 (560)
....|..+|.-++. +++.+..+.++.++..++.++. ...+.++..++.+|..+- .++.|.+.|-+.+++..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34456778888766 6888889999999999999994 467899999999888775 68899999999999999999998
Q ss_pred cCC-chhHHHHHHHHHHHHcc
Q 008585 330 CGI-LLGSKEYAAECLQNLTA 349 (560)
Q Consensus 330 ~~~-~~~v~~~a~~~L~~La~ 349 (560)
+.. +.+++..+++.|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 643 24678888887776554
No 165
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.22 E-value=1.3 Score=49.06 Aligned_cols=241 Identities=15% Similarity=0.155 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh-ccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHH
Q 008585 249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL 327 (560)
Q Consensus 249 ~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~l 327 (560)
..+.....+.+++...+........+..+ .+...+..+ .+..+-++..|+++++..+... ....+ -.+++..++++
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl~~~-~p~ild~L~ql 538 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVK-VLLSL-QPMILDGLLQL 538 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCce-ecccc-chHHHHHHHHH
Confidence 36666668888888775542111111111 012222222 3566778888999888887422 11111 14577788888
Q ss_pred hhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc----cCCccHHHHHHHHHHhhc-cccHHHHHhCCcH
Q 008585 328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESAVGALRNLVG-SVSQEVLISLGFF 402 (560)
Q Consensus 328 L~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll----~~~~~~~~a~~~L~nla~-~~~~~~l~~~~~i 402 (560)
....++ ++.....++|+..+..+++.. ...++...+....++ ++|.+...+-.++..++. ..+.. -.....+
T Consensus 539 as~~s~-evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g-~m~e~~i 615 (1005)
T KOG2274|consen 539 ASKSSD-EVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG-PMQERLI 615 (1005)
T ss_pred cccccH-HHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc-chHHHHH
Confidence 877665 788888999999999877642 233445555555554 336555666666666665 11111 1234579
Q ss_pred HHHHHHHhcCC----HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCChhh
Q 008585 403 PRLVHVLKAGS----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLL-EAKPNSVREVAAQAISSLVTLPQNC 475 (560)
Q Consensus 403 ~~Lv~lL~~~~----~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll-~s~~~~v~~~A~~aL~~L~~~~~~~ 475 (560)
|.++..|...+ +...-.++..|..+.++ +...+.+... +.|++.+.. ++++.++-..+-++|..+.......
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 99999998765 77788888888877765 3444444332 466666655 5677777788999999988654443
Q ss_pred HHHhhhCCChH------HHHhccCCCC
Q 008585 476 REVKRDDKSVP------NLVQLLDPSP 496 (560)
Q Consensus 476 ~~~~~~~~~v~------~Lv~lL~~~~ 496 (560)
-....++.+.. .+-+||++..
T Consensus 695 ~~t~~~e~g~~~~yImqV~sqLLdp~~ 721 (1005)
T KOG2274|consen 695 LLTWHDEPGHNLWYIMQVLSQLLDPET 721 (1005)
T ss_pred HHhhccCCCccHHHHHHHHHHHcCCcc
Confidence 33333333333 3447777763
No 166
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.13 E-value=2.2 Score=47.93 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=108.0
Q ss_pred HHhCCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh----cCC---chhHHHHHH
Q 008585 274 IVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD----CGI---LLGSKEYAA 341 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~----~~~---~~~v~~~a~ 341 (560)
+.+.||+..++.++.+ .+.......+..|...+..+.||+.+.+.|+++.|++.+. .+. ...+-+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 4468999999999875 2334556677788888889999999999999999999885 222 125666667
Q ss_pred HHHHHHccCChh--HHH--HHHhCC-----C---HHHHHHhccC------CccHHHHHHHHHHhhc-cccHHHHHhCCcH
Q 008585 342 ECLQNLTASNEN--LRR--SVVSEG-----G---IRSLLAYLDG------PLPQESAVGALRNLVG-SVSQEVLISLGFF 402 (560)
Q Consensus 342 ~~L~~La~~~~~--~~~--~i~~~g-----~---l~~L~~ll~~------~~~~~~a~~~L~nla~-~~~~~~l~~~~~i 402 (560)
.++..+...... ... ...... . +..+++.+.+ +.+....+++|-+|+. .......+ +
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L----v 268 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL----V 268 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH----H
Confidence 666666542111 000 001111 2 5556666654 3456788888888887 33332221 2
Q ss_pred HHHHHHHh--c----CCHHHHHHHHHHHHHHhCC-------hhHHHHHHhcCCHHHHHHHHccCCH
Q 008585 403 PRLVHVLK--A----GSLGAQQAAASALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAKPN 455 (560)
Q Consensus 403 ~~Lv~lL~--~----~~~~v~~~A~~aL~~La~~-------~~~~~~i~~~g~i~~Lv~ll~s~~~ 455 (560)
..+-..++ . ..++- +..+..++.++.. ...+..+++.|++...++.+....+
T Consensus 269 ~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 269 EHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred HHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 22222221 1 11111 2336666666643 3568889999999988888865444
No 167
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.10 E-value=0.065 Score=54.68 Aligned_cols=287 Identities=17% Similarity=0.147 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC------ChhhHHHHHhCCChHH
Q 008585 210 PRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM------SAEMARAIVGHGGVRP 282 (560)
Q Consensus 210 ~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~------~~~~~~~l~~~g~i~~ 282 (560)
..+|-++..+|..++.+-. .+..+++ +...+..-+.+..+.++++++.++.++-. .|+....-...+.+..
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 4577888888888887654 3333333 23334444566789999999999988842 1222222222222221
Q ss_pred HH------HH-hccCChHHHHHHHHHHHHhcCC-----chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585 283 LI------EI-CQTGDSVSQAAAACTLKNISAV-----PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350 (560)
Q Consensus 283 Lv------~l-l~~~~~~~~~~a~~aL~nLa~~-----~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~ 350 (560)
.. .. -.+..+..+...|.++.++... ++-++. ..+.+..=..+..+.-++..|.+++.-..-+
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH 421 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYVLH 421 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEEec
Confidence 11 11 1223455678889999888641 111111 0111110011111113556666666666654
Q ss_pred ChhHHHHH-HhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-----cccHHHHHhCCcHHHH-HHHHh------cCCHH
Q 008585 351 NENLRRSV-VSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-----SVSQEVLISLGFFPRL-VHVLK------AGSLG 415 (560)
Q Consensus 351 ~~~~~~~i-~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-----~~~~~~l~~~~~i~~L-v~lL~------~~~~~ 415 (560)
. ..|... +-......++..+.+ -..|+.+.++++|+.. ..+.+.. ...++..+ ..+++ .....
T Consensus 422 p-~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~-~eR~sg~ll~~~~~~A~~~~Ad~dk 499 (728)
T KOG4535|consen 422 P-CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSF-QERFSGLLLLKMLRSAIEASADKDK 499 (728)
T ss_pred c-chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3 333322 234445555555544 4578999999999987 1221111 11222222 22222 13578
Q ss_pred HHHHHHHHHHHHhCCh------hHHHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCChh-hHHHhhhCCChHH
Q 008585 416 AQQAAASALCRVCTSA------EMKKLVGEAGCTPLLIKLL-EAKPNSVREVAAQAISSLVTLPQN-CREVKRDDKSVPN 487 (560)
Q Consensus 416 v~~~A~~aL~~La~~~------~~~~~i~~~g~i~~Lv~ll-~s~~~~v~~~A~~aL~~L~~~~~~-~~~~~~~~~~v~~ 487 (560)
|+.+|.++|+|+..-- .++..+ .|.+..+..-. -..+..||..|+.++.||..++.- ....-......+.
T Consensus 500 V~~navraLgnllQvlq~i~~~~~~e~~--~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 500 VKSNAVRALGNLLQFLQPIEKPTFAEII--EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhHHHHHHhhHHHHHHHhhhccHHHHH--HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 9999999999987541 122222 22233332222 235567999999999999866533 1111111233467
Q ss_pred HHhccCCC-CchhhHHHHHHHH
Q 008585 488 LVQLLDPS-PQNTAKKYAVACL 508 (560)
Q Consensus 488 Lv~lL~~~-~~~~~~~~a~~~L 508 (560)
|.+++.+. ++. ++-.+.++|
T Consensus 578 L~~Lv~~~~NFK-VRi~AA~aL 598 (728)
T KOG4535|consen 578 LTSLVTSCKNFK-VRIRAAAAL 598 (728)
T ss_pred HHHHHHHhccce-Eeehhhhhh
Confidence 77777654 332 444444444
No 168
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.97 E-value=0.47 Score=43.84 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHH
Q 008585 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLI 243 (560)
Q Consensus 171 ~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv 243 (560)
+.--+-.|.+.....|+.++.+.++..--.+-.+|...+ ...|..++.+++.|..+++ ....+....++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 333334455555567888888887766444555554322 6678899999999998876 566777888999999
Q ss_pred HhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh--------CCChHHHHHHh-ccCChHHHHHHHHHHHHhcCCchhHHH
Q 008585 244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQM 314 (560)
Q Consensus 244 ~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~--------~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~ 314 (560)
++++.++.-.+..++.++..+-.++..-..+.+ ...+..++..+ ..+......++.++-..|+..++.|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 999999999999999999999877766544432 12222333222 335666778888888888888888776
Q ss_pred HHh
Q 008585 315 LAE 317 (560)
Q Consensus 315 i~e 317 (560)
+..
T Consensus 276 L~~ 278 (315)
T COG5209 276 LSS 278 (315)
T ss_pred Hhc
Confidence 643
No 169
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=8.8 Score=43.32 Aligned_cols=302 Identities=15% Similarity=0.130 Sum_probs=168.8
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhc------CC--CHHHHHHHHHHHHHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLT------AT--SPRIREKTVTVICSL 223 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~------~~--~~~v~~~A~~~L~~L 223 (560)
..+|+.-+.....+... ...|...+..+++.. .++ =.+.++.+++.+. .+ ++.-.+.|+..++.|
T Consensus 372 ~EYiR~~~Di~ed~~sp-~~Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl 445 (1010)
T KOG1991|consen 372 YEYIRKKFDIFEDGYSP-DTAALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSL 445 (1010)
T ss_pred HHHHHhcCchhcccCCC-cHHHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHH
Confidence 44555544444433322 223455555555433 222 1256777888777 22 366678889999988
Q ss_pred hcC----CchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhc-cCChHHHHH
Q 008585 224 AES----GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQ-TGDSVSQAA 297 (560)
Q Consensus 224 a~~----~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~ 297 (560)
+.- +.++.. .+.-.++.+...+++...-.|.+|||++...+. +-.....+ ..+++.....+. +.+-.++..
T Consensus 446 ~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~Ve 522 (1010)
T KOG1991|consen 446 ASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVE 522 (1010)
T ss_pred HHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhH
Confidence 842 223333 333456777778888888999999999999983 32111111 112244445555 677788999
Q ss_pred HHHHHHHhcCCch-hHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc-CChhHHHHHHh--CCCHHHHHHhc
Q 008585 298 AACTLKNISAVPE-VRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVS--EGGIRSLLAYL 371 (560)
Q Consensus 298 a~~aL~nLa~~~~-~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~--~g~l~~L~~ll 371 (560)
|+-||..+-.+.+ ...++.. .+.++.++++.+.-+. +...++... +.. ..++......+ ........+++
T Consensus 523 AalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt~vme~---iV~~fseElsPfA~eL~q~La~~F~k~l 598 (1010)
T KOG1991|consen 523 AALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLTNVMEK---IVCKFSEELSPFAVELCQNLAETFLKVL 598 (1010)
T ss_pred HHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHHHHHHH---HHHHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 9999998876543 3344444 4456666666665443 223222222 221 11222222221 12234455555
Q ss_pred cC--------CccHHHHHHHHHHhhc-----cccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHH
Q 008585 372 DG--------PLPQESAVGALRNLVG-----SVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKK 435 (560)
Q Consensus 372 ~~--------~~~~~~a~~~L~nla~-----~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~ 435 (560)
.. .+-+..|+++|+.+.. .+.++.+ .+..+++.+-.+|++.-.++-+++...+..+... ++...
T Consensus 599 ~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp 678 (1010)
T KOG1991|consen 599 QTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISP 678 (1010)
T ss_pred hccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCH
Confidence 42 2235667777777765 2333333 2334566666777777788888888888887643 55555
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 436 ~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.|++ ..+.+.+.+....-+--....-+|.|..
T Consensus 679 ~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~v 710 (1010)
T KOG1991|consen 679 IMWG--LLELILEVFQDDGIDYFTDMMPALHNYV 710 (1010)
T ss_pred HHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhhe
Confidence 5543 4566666665544444455556666555
No 170
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.84 E-value=1.4 Score=43.92 Aligned_cols=170 Identities=13% Similarity=0.120 Sum_probs=109.3
Q ss_pred CCHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh--hhHH
Q 008585 196 SNIAALV-QLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--EMAR 272 (560)
Q Consensus 196 g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~~ 272 (560)
+.++.|+ ..++++++.+|+.|+++|+..+--+. .+.. ..++.+.+.++.++..++..|+.++..+.... +...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3444444 67788899999999999999987664 1111 23777888888889999999999999885432 2211
Q ss_pred HH-------HhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHH-hhc--CCchhHHHHHHH
Q 008585 273 AI-------VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL-LDC--GILLGSKEYAAE 342 (560)
Q Consensus 273 ~l-------~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~l-L~~--~~~~~v~~~a~~ 342 (560)
.. .....+..+.+.+.+.+++++..++..++.|--...... ....+..|+-+ .+. .+...++..-..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 11 123456777888888899999999999999854322221 12233333333 221 122256666666
Q ss_pred HHHHHccCChhHHHHHHhCCCHHHHHHhccC
Q 008585 343 CLQNLTASNENLRRSVVSEGGIRSLLAYLDG 373 (560)
Q Consensus 343 ~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~ 373 (560)
++-..+..++.++ ..+....++.+..+.+.
T Consensus 179 Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQ-ERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHH-HHHHHHHHHHHHHHHhC
Confidence 7777787777665 44455556666655543
No 171
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=3 Score=47.31 Aligned_cols=247 Identities=16% Similarity=0.156 Sum_probs=144.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCC----hhh
Q 008585 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMS----AEM 270 (560)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~----~~~ 270 (560)
+.++.|++.|++.+..++=.|++.++.++...+ ..+ ...++...+.++... +...-..++-+|..|+.. +..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 678888889999999999999999999988765 112 123566677766554 355667888999998763 111
Q ss_pred HHHHHhCCChHHHHHHhcc--------CChHHHHHHHHHHHHhcCC--c-hhHHHHHhcCcHHH-HHHHhhcCCchhHHH
Q 008585 271 ARAIVGHGGVRPLIEICQT--------GDSVSQAAAACTLKNISAV--P-EVRQMLAEEGIVSV-MIKLLDCGILLGSKE 338 (560)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~--------~~~~~~~~a~~aL~nLa~~--~-~~~~~i~e~g~v~~-L~~lL~~~~~~~v~~ 338 (560)
... ++|.++.-|.- ....+|..|+.++|.++.. + +... +.. ...+. +...+-+.+- ..|+
T Consensus 418 l~d-----VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDrev-ncRR 489 (1133)
T KOG1943|consen 418 LED-----VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDREV-NCRR 489 (1133)
T ss_pred HHH-----HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCchh-hHhH
Confidence 222 23555555532 2457899999999999852 2 2222 211 12222 2233334554 7889
Q ss_pred HHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHH-----HhcCC
Q 008585 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHV-----LKAGS 413 (560)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~l-----L~~~~ 413 (560)
.|..++.+......+. .-|++ |+...+ ..++.-..|.-..-....-.-.|...++++- +.+-+
T Consensus 490 AAsAAlqE~VGR~~n~------p~Gi~-Lis~~d-----y~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd 557 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNF------PHGIS-LISTID-----YFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWD 557 (1133)
T ss_pred HHHHHHHHHhccCCCC------CCchh-hhhhcc-----hhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhccccccc
Confidence 8888888776532221 00111 111111 1122222221110000000112333444433 44568
Q ss_pred HHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 414 LGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 414 ~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
..+++.++++|.+|+.. +++ ...+.+++|++...+++...|.-+.-+...+.
T Consensus 558 ~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 558 VKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 99999999999998843 332 23467888888888888888877666666665
No 172
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.83 E-value=1.1 Score=45.96 Aligned_cols=210 Identities=16% Similarity=0.185 Sum_probs=123.2
Q ss_pred hhchHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcC-CCH-HHHHHHHHHHHHHhcCCc
Q 008585 152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSP-RIREKTVTVICSLAESGS 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~-~v~~~A~~~L~~La~~~~ 228 (560)
....|.+++..|..++ ...|..++-.|..-+. ++..+..+...|.++.+.+.+.. ++. ..--.++.++..++.+..
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 4556888898888544 4557777777777776 77888899999999999999843 433 333444555666666554
Q ss_pred hHHHHHhCCCHHHHHHhhhc-------C--C-----------------------------------HHHHHHHHHHHHHh
Q 008585 229 CENWLVSEGVLPPLIRLVES-------G--S-----------------------------------TVGKEKATISLQRL 264 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~-------~--~-----------------------------------~~~~~~a~~~L~~L 264 (560)
.-..+.+.+....+++++.- . + ...+..+..++..+
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l 177 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESL 177 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHH
Confidence 44444445555555666650 0 0 00111122333333
Q ss_pred h--------C------C-hhhHHHHHhCCChHHHHHHhcc----C-------Ch-----HHHHHHHHHHHHhcC-CchhH
Q 008585 265 S--------M------S-AEMARAIVGHGGVRPLIEICQT----G-------DS-----VSQAAAACTLKNISA-VPEVR 312 (560)
Q Consensus 265 a--------~------~-~~~~~~l~~~g~i~~Lv~ll~~----~-------~~-----~~~~~a~~aL~nLa~-~~~~~ 312 (560)
+ . . +..++.+...|++..+++++.+ . ++ ..-..++.+|-|.+. +++++
T Consensus 178 ~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq 257 (361)
T PF07814_consen 178 VRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQ 257 (361)
T ss_pred HHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccch
Confidence 1 0 0 1113445556788998888752 1 11 233567888888874 55777
Q ss_pred HHHHh--cCcH-HHHHHHhhcCCc--hhHHHHHHHHHHHHccCChhHHHHHHhCC
Q 008585 313 QMLAE--EGIV-SVMIKLLDCGIL--LGSKEYAAECLQNLTASNENLRRSVVSEG 362 (560)
Q Consensus 313 ~~i~e--~g~v-~~L~~lL~~~~~--~~v~~~a~~~L~~La~~~~~~~~~i~~~g 362 (560)
..+.. .+.+ ..+..++....+ ......+++.+.|++.+++..++.+...+
T Consensus 258 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 258 SYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 77766 2222 233333322211 13467889999999999877666665543
No 173
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.71 E-value=0.31 Score=44.88 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHhC----------------CCHHHHHHhhhcC------CHHHHHHHHHHHHHhh
Q 008585 208 TSPRIREKTVTVICSLAESGSCENWLVSE----------------GVLPPLIRLVESG------STVGKEKATISLQRLS 265 (560)
Q Consensus 208 ~~~~v~~~A~~~L~~La~~~~~~~~l~~~----------------g~i~~Lv~lL~~~------~~~~~~~a~~~L~~La 265 (560)
++...-..++..|+|++..++....+.+. ..+..|+..+..+ ...-..+.+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34455677888888888877654433322 2566677666552 3345678999999999
Q ss_pred CChhhHHHHHhC--CC--hHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhc---CcHHHHHHHhh
Q 008585 266 MSAEMARAIVGH--GG--VRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE---GIVSVMIKLLD 329 (560)
Q Consensus 266 ~~~~~~~~l~~~--g~--i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~---g~v~~L~~lL~ 329 (560)
..++.+..+... +. +..|+.+..+.+..-|.-++.+|.|+|...+....+... +++|.++--|.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999988863 34 677888888776666678999999999887777777663 45555544444
No 174
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.54 E-value=1.6 Score=44.74 Aligned_cols=269 Identities=15% Similarity=0.169 Sum_probs=146.7
Q ss_pred CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHH-HHhhCChhhHH
Q 008585 196 SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISL-QRLSMSAEMAR 272 (560)
Q Consensus 196 g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L-~~La~~~~~~~ 272 (560)
+-+..++.-|+.+ ...+|..++.-|..-+.+++.+..+...|....+++.+.+. +......++.++ .-++.+.....
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 3566777777633 47888888888888888999999999999999999999554 332444444444 44455555555
Q ss_pred HHHhCCChHHHHHHhccC-ChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhc--------CCchhHHHHHHHH
Q 008585 273 AIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC--------GILLGSKEYAAEC 343 (560)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~--------~~~~~v~~~a~~~ 343 (560)
.+.+.+....++.++... ........- .....+-.+.. ...+..+-+.+.. ......+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 555566666667777611 000000000 00000001110 1122222222211 1112345555655
Q ss_pred HHHHc--------------cCChhHHHHHHhCCCHHHHHHhcc----C---------Cc-----cHHHHHHHHHHhhc--
Q 008585 344 LQNLT--------------ASNENLRRSVVSEGGIRSLLAYLD----G---------PL-----PQESAVGALRNLVG-- 389 (560)
Q Consensus 344 L~~La--------------~~~~~~~~~i~~~g~l~~L~~ll~----~---------~~-----~~~~a~~~L~nla~-- 389 (560)
+..++ ...+.+++.+.+.||+..++..+. . +. ....++++|-|.+.
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 55553 122345677777889999998874 1 11 23567888888776
Q ss_pred cccHHHHHh--CCcHHHHH-HHHhc---CCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHc-----------
Q 008585 390 SVSQEVLIS--LGFFPRLV-HVLKA---GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLE----------- 451 (560)
Q Consensus 390 ~~~~~~l~~--~~~i~~Lv-~lL~~---~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~----------- 451 (560)
..++..+.. .+.++.+. .++.. .....+..+++.+.|++.+ ++.+..+...++...+..+..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 344444432 23333333 33332 2345567888999999965 666666655543332221111
Q ss_pred ---cCCHHHHHHHHHHHHHhcCC
Q 008585 452 ---AKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 452 ---s~~~~v~~~A~~aL~~L~~~ 471 (560)
.+..+....++.+|-||+.+
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred ccccccchHHHHHHHhHHHheee
Confidence 12233556667777777643
No 175
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.50 E-value=2.4 Score=42.94 Aligned_cols=158 Identities=14% Similarity=0.100 Sum_probs=114.7
Q ss_pred HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc-CChhHHHHHHhC--CCHHHHHHhccC------C---------
Q 008585 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVSE--GGIRSLLAYLDG------P--------- 374 (560)
Q Consensus 313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~~--g~l~~L~~ll~~------~--------- 374 (560)
+.+.+.. +..+..-|.+... .+...++..|.+++. ......+.+.+. -..+.+.+++.. .
T Consensus 51 ~~iL~~~-~k~lyr~L~~~~~-~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSSKP-SLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHH-HHHHHHHhCcCcH-HHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 3444433 7788888887775 788899999999998 665666666652 233444554421 1
Q ss_pred ccHHHHHHHHHHhhc---cccHHHH-HhCCcHHHHHHHHhcCCHHHHHHHHHHHHH-HhCC----hhHHHHHHhcCCHHH
Q 008585 375 LPQESAVGALRNLVG---SVSQEVL-ISLGFFPRLVHVLKAGSLGAQQAAASALCR-VCTS----AEMKKLVGEAGCTPL 445 (560)
Q Consensus 375 ~~~~~a~~~L~nla~---~~~~~~l-~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~-La~~----~~~~~~i~~~g~i~~ 445 (560)
++|...+.++..+.. +.....+ ...+.+..+.+.|..+++++......++.. +..+ ...+-.+.+...+..
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 778888888888887 2334444 455778899999999889999999999985 4444 345566667778999
Q ss_pred HHHHHccCCH----HHHHHHHHHHHHhcCCC
Q 008585 446 LIKLLEAKPN----SVREVAAQAISSLVTLP 472 (560)
Q Consensus 446 Lv~ll~s~~~----~v~~~A~~aL~~L~~~~ 472 (560)
|..+....++ .+++.+-+.|..++.++
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 9998877666 89999999999998554
No 176
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.50 E-value=1.5 Score=46.03 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=110.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCc---hhHHHHHHHHHHHHccCChhHHHH
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL---LGSKEYAAECLQNLTASNENLRRS 357 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~---~~v~~~a~~~L~~La~~~~~~~~~ 357 (560)
..+.+++.++++..+..+...|..++.+......++...++..|..++.++.. .++...++.++..+-.+.-... .
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW-~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW-E 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee-e
Confidence 55678888889999988999999999999999999999999999999998874 2345555555555543221111 1
Q ss_pred HHhCCCHHHHHHhcc----CCccHHHHHHHHHHhhc-c-ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--
Q 008585 358 VVSEGGIRSLLAYLD----GPLPQESAVGALRNLVG-S-VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-- 429 (560)
Q Consensus 358 i~~~g~l~~L~~ll~----~~~~~~~a~~~L~nla~-~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-- 429 (560)
.+...++.....+.. +..+...|+..|-++.. . ...+.+.+.--++.|+..++..+..++..|...+..+..
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 111222333333332 24567888888888887 3 345666777789999999999999999998777777653
Q ss_pred ChhHHHHHHhc
Q 008585 430 SAEMKKLVGEA 440 (560)
Q Consensus 430 ~~~~~~~i~~~ 440 (560)
.++-++.+.+.
T Consensus 245 ~~~~R~~~~~~ 255 (713)
T KOG2999|consen 245 PDDKRFEMAKS 255 (713)
T ss_pred ChHHHHHHHHH
Confidence 24455555443
No 177
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.35 E-value=3.4 Score=46.15 Aligned_cols=177 Identities=22% Similarity=0.183 Sum_probs=110.9
Q ss_pred HHHHhhCC-hhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcH--HHHHHHhhcCCchh
Q 008585 260 SLQRLSMS-AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIV--SVMIKLLDCGILLG 335 (560)
Q Consensus 260 ~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v--~~L~~lL~~~~~~~ 335 (560)
+|++++.+ +++...+.+.||+..+...++. ...+++..+.+.+.|++...+.+..+.....+ ..+-.++..-+..+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 55677654 8889999999999999999985 56788899999999999755444333321111 23333444433336
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHhCCcHHH-HHHHHhc-CC
Q 008585 336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPR-LVHVLKA-GS 413 (560)
Q Consensus 336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~-Lv~lL~~-~~ 413 (560)
.-++++..|..+..+.+.. .+.+.-+. +.+.-..++..+.. ....+.....+.+ +..++.. ..
T Consensus 574 rsY~~~siLa~ll~~~~~~----~~~~~r~~---------~~~~l~e~i~~~~~--~~~~~~~~~~f~~~~~~il~~s~~ 638 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKT----TECVFRNS---------VNELLVEAISRWLT--SEIRVINDRSFFPRILRILRLSKS 638 (699)
T ss_pred HHHHHHHHHHHHHhCCCcC----ccccchHH---------HHHHHHHHhhccCc--cceeehhhhhcchhHHHHhcccCC
Confidence 7889999999998865431 11111111 11111112222211 1111222333333 5556654 56
Q ss_pred HHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHc
Q 008585 414 LGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE 451 (560)
Q Consensus 414 ~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~ 451 (560)
++.+..|.+++.++.. ++++.+.+.+.|+++.+.+.-.
T Consensus 639 ~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 639 DGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred CchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 8999999999999985 4789999999999988877664
No 178
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.10 E-value=6.5 Score=40.77 Aligned_cols=184 Identities=16% Similarity=0.208 Sum_probs=119.5
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhCChh----hHHHHHhCCChHHHHHHhccC-------ChHHHHHHHHHHHHhcCC
Q 008585 240 PPLIRLVESGSTVGKEKATISLQRLSMSAE----MARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKNISAV 308 (560)
Q Consensus 240 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~----~~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~nLa~~ 308 (560)
..+..+++..+..-|-.+.-...++..+++ ++..+.+.-|.+.+-+++.++ +...+..+...|.-.|+.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 335566666677777777777788877654 355677888888888888753 223456677788888888
Q ss_pred chhH--HHHHhcCcHHHHHHHhhcCCchh------HHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCcc---H
Q 008585 309 PEVR--QMLAEEGIVSVMIKLLDCGILLG------SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP---Q 377 (560)
Q Consensus 309 ~~~~--~~i~e~g~v~~L~~lL~~~~~~~------v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~---~ 377 (560)
+|.. +.++ ..||.+..++..+.+.+ +.+.+..||..++...++ .+.++..|+++.+.++-..++. +
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhH
Confidence 7654 3444 46899999987654333 778899999999998655 4578899999999987654332 3
Q ss_pred HHHHHHHHHhhc-----cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 378 ESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 378 ~~a~~~L~nla~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
.-++.++.-... ++....+.. .|..+-.-+...+...+.+.+..|..+-
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344444443333 233332221 1333333344456677888888888543
No 179
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=1.8 Score=47.80 Aligned_cols=210 Identities=10% Similarity=0.043 Sum_probs=131.5
Q ss_pred hccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585 287 CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS 366 (560)
Q Consensus 287 l~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~ 366 (560)
+.++-+.++..++..|+.+....+-+..+..++++......+++.++ .+--+|...+..||.-.++ ..++.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds-yvyLnaI~gv~~Lcevy~e--------~il~d 806 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS-YVYLNAIRGVVSLCEVYPE--------DILPD 806 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc-eeeHHHHHHHHHHHHhcch--------hhHHH
Confidence 34455678899999999999876777778889999999999999987 8888888876667653332 33677
Q ss_pred HHHhccC------CccHHHHHHHHHHhhcc--ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChh--HHHH
Q 008585 367 LLAYLDG------PLPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE--MKKL 436 (560)
Q Consensus 367 L~~ll~~------~~~~~~a~~~L~nla~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~--~~~~ 436 (560)
+.+.-.+ ++.+...-.+|.++... +-..... ...+...+..+++++...+..++..+++++.-.. ....
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 7664322 34555556777777652 2111111 1345556666676677778889999999885422 1223
Q ss_pred HHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCC-hhhHHHhh--hCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585 437 VGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTLP-QNCREVKR--DDKSVPNLVQLLDPSPQNTAKKYAVACL 508 (560)
Q Consensus 437 i~~~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~L~~~~-~~~~~~~~--~~~~v~~Lv~lL~~~~~~~~~~~a~~~L 508 (560)
+. .+...++.+.+ ++..-+|..|+..+..+..+- ...-++.. --+....+.+.....+++..+..+..++
T Consensus 886 ~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 886 FH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred HH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 32 23555555555 456778999999999887432 22222221 0123344555555555555665555444
No 180
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.02 E-value=5.7 Score=41.84 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=116.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCH----HHHHHHHHHHHHhhCChhhHH
Q 008585 197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGST----VGKEKATISLQRLSMSAEMAR 272 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~----~~~~~a~~~L~~La~~~~~~~ 272 (560)
....+.+.+.+++...+..+..-|..++.+......++...++..|.+++.++.. .+......++..+-.+.-..|
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3556778888888888888999999999999888888888999999999998744 445555555555544433445
Q ss_pred HHHhCCChHHHHHHhcc--CChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 273 AIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
..+...+|.....+... .+..+-..|+..|-++..+. ..+..+.++--+..++..+...+. .++..|...+..+..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~-~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ-RIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch-HHHHHHHHHHHHHHh
Confidence 55555555555555532 34456677888888887544 577778888889999999998886 788888777777765
Q ss_pred C-ChhHHHHHHh
Q 008585 350 S-NENLRRSVVS 360 (560)
Q Consensus 350 ~-~~~~~~~i~~ 360 (560)
. .+..|..+.+
T Consensus 243 ~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 243 KAPDDKRFEMAK 254 (713)
T ss_pred hCChHHHHHHHH
Confidence 2 2334444443
No 181
>PRK14707 hypothetical protein; Provisional
Probab=93.99 E-value=21 Score=44.04 Aligned_cols=378 Identities=15% Similarity=0.106 Sum_probs=194.8
Q ss_pred cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCC-HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHH
Q 008585 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPL 242 (560)
Q Consensus 165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L 242 (560)
..+..+...|+..|..-+-++++....+ +.-++...++-| +-++ ...+..|...-..++.+++.++.+-..| +..+
T Consensus 301 wpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~ 378 (2710)
T PRK14707 301 WADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSV 378 (2710)
T ss_pred CCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHH
Confidence 4566666677777777666666655433 333444444444 4555 6666666667777777777666665444 5556
Q ss_pred HHhhhc-C-CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHH-HhcCCchhHHHHHhcC
Q 008585 243 IRLVES-G-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK-NISAVPEVRQMLAEEG 319 (560)
Q Consensus 243 v~lL~~-~-~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~-nLa~~~~~~~~i~e~g 319 (560)
++.|.. . ++..+..+...-..+..+++.+..+-..|+-..|-.+.+=++..+-..++.+|. .++.+.+.++.|--.+
T Consensus 379 lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~ 458 (2710)
T PRK14707 379 LNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN 458 (2710)
T ss_pred HhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH
Confidence 665553 3 445555555555667777777777766665555555555455555555555554 5566778887776655
Q ss_pred cHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhc----cccHHH
Q 008585 320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG----SVSQEV 395 (560)
Q Consensus 320 ~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~----~~~~~~ 395 (560)
+...|-.+-+=++. .+...++..|..=..++...++.+- .-.+..-+.-|+.-.-+..+..++..++. +.....
T Consensus 459 va~~LnalSKWPd~-p~c~~aa~~La~~l~~~~~l~~a~~-~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~ 536 (2710)
T PRK14707 459 VTQALDALSKWPDT-PICGQTASALAARLAHERRLRKALK-PQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRK 536 (2710)
T ss_pred HHHHHHHhhcCCCC-hhHHHHHHHHHHHhcccHHHHhhcC-HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhh
Confidence 44444333333444 5565566665544444455443332 11222233333332223355556655554 211111
Q ss_pred HHhCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCC
Q 008585 396 LISLGFFPRLVHVL-KAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVTLP 472 (560)
Q Consensus 396 l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~~~ 472 (560)
.+...-+..+++-+ +..+...-+.++..|..+. ..+..++.+--.+ |..+++.+.. ++......|+..|..-...+
T Consensus 537 ~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~-Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~ 615 (2710)
T PRK14707 537 AFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQG-VVIVLNALSKWPDTAVCAEAVNALAERLVDE 615 (2710)
T ss_pred hhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhH-HHHHHHhhccCCCcHHHHHHHHHHHHHhccC
Confidence 11222233444444 3455555555665666544 3355556664333 6666666643 33333334444444444444
Q ss_pred hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHH-HHhCCChhhHHHHHHcChhHHHHHhhccCc-hhHHHHHHHH
Q 008585 473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL-ASLSPSKKCKKLMISYGAIGYLKKLSEMDI-PGARKLLERL 548 (560)
Q Consensus 473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L-~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~-~~akkl~~~l 548 (560)
+....-+ +...+..++.-|..-+....-..++..| ..+..+...+..|-..+.--.|-.|.+-.+ +..++.++.|
T Consensus 616 ~~lr~~l-~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~L 692 (2710)
T PRK14707 616 PDLRKEL-DPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGM 692 (2710)
T ss_pred hhhhhhc-cHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHH
Confidence 4432222 2344566666665554443333343333 345555555555555555545555544333 3444444443
No 182
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.97 E-value=2.6 Score=43.47 Aligned_cols=184 Identities=15% Similarity=0.167 Sum_probs=107.5
Q ss_pred hHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHH-HHhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchHH
Q 008585 155 NTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVL-AVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 155 ~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~-~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
.|..++..+... ..+.+..|+..|..+..++...+= ...+ ..+..+++.|.. .+..++..|+++|..+..+...+-
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 455666655433 456788888888888876632111 1111 245567788877 668889999999999998876332
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHH-HHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC--
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATIS-LQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-- 308 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~-L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-- 308 (560)
.=-.+-++..+++.-++....+...|... +.-++...+... |..+..++...|...-..+...+..+...
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~ 438 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLS 438 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC
Confidence 21122245566666666655555444444 444444332221 12233333344444444455455555431
Q ss_pred -chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 309 -PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 309 -~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
++.-..+ ..+.|++++--++.+. .||..|..||-.+..
T Consensus 439 ~EeL~~ll--~diaP~~iqay~S~SS-~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 439 AEELLNLL--PDIAPCVIQAYDSTSS-TVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHHhh--hhhhhHHHHHhcCchH-HhhhhHHHhHHHHHH
Confidence 1222222 3578889988888886 899999999887764
No 183
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.96 E-value=3.6 Score=42.39 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=77.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCCchH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-AT---SPRIREKTVTVICSLAESGSCE 230 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-~~---~~~v~~~A~~~L~~La~~~~~~ 230 (560)
.++.++..-..-++.....|+..+..+...+|-....+.+.|.++.+++.+. .. +.++...--.+++.|+-+....
T Consensus 110 sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl 189 (379)
T PF06025_consen 110 SLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGL 189 (379)
T ss_pred HHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHH
Confidence 3444455445667888889999999999999988888889999999999888 33 4677777778999999999999
Q ss_pred HHHHhCCCHHHHHHhhhcC
Q 008585 231 NWLVSEGVLPPLIRLVESG 249 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~ 249 (560)
+.+.+.+.++.+++++.+.
T Consensus 190 ~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 190 EKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHhcChHHHHHHHhCCH
Confidence 9999999999999988764
No 184
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.80 E-value=1.1 Score=40.82 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=66.1
Q ss_pred CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcC-CHHHHHHHH
Q 008585 374 PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAG-CTPLLIKLL 450 (560)
Q Consensus 374 ~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g-~i~~Lv~ll 450 (560)
|.++.+++-+++-|+. +... ...++.+...|+++++.|+..|+.+|.+|....-.+ -.| .+..++..+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHHH
Confidence 4567778888888876 2222 346888999999999999999999999987541111 012 236777788
Q ss_pred ccCCHHHHHHHHHHHHHhcCC
Q 008585 451 EAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 451 ~s~~~~v~~~A~~aL~~L~~~ 471 (560)
.+.+++++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999999744
No 185
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.70 E-value=13 Score=40.64 Aligned_cols=129 Identities=18% Similarity=0.088 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc
Q 008585 210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT 289 (560)
Q Consensus 210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~ 289 (560)
..+...+++.+..+-..+..-+ + -.|.+..+++...+.+..+|..++..|..+.........-+-.+....+..-+.+
T Consensus 60 dRIl~fla~fv~sl~q~d~e~D-l-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEED-L-VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhh-H-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence 4555556666665554333222 2 2356777777777889999999999999997633333333345556777777778
Q ss_pred CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHH
Q 008585 290 GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL 344 (560)
Q Consensus 290 ~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L 344 (560)
..|.+|..|..+|+.+-..+..- +..++..+..++++++..+||..++..+
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 89999999999999997432110 1236778888888766668998776544
No 186
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.67 E-value=9 Score=41.23 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=98.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC-chhHHHHHh
Q 008585 240 PPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAE 317 (560)
Q Consensus 240 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e 317 (560)
..++..-+ ++...+..|+..+.+...+ |+....- +..++++|.+.+..+|..|...|..+|.+ ++....+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 34444444 5788999999999999776 6655533 38999999999999999999999999974 4666555
Q ss_pred cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc----C-CccHHHHHHHHHHhhc---
Q 008585 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD----G-PLPQESAVGALRNLVG--- 389 (560)
Q Consensus 318 ~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~----~-~~~~~~a~~~L~nla~--- 389 (560)
+.+|+++|.+++. .....+-.+|..+...++.. .+..++..+. . ..+++.++.+|..=..
T Consensus 98 ---aDvL~QlL~tdd~-~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 98 ---ADVLVQLLQTDDP-VELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHTT---H-HHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHhcccH-HHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 5778999988775 44555555666665544432 1444444442 2 4478888888865443
Q ss_pred cc-cH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585 390 SV-SQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (560)
Q Consensus 390 ~~-~~-~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~ 429 (560)
.+ .. ..=.+.-++..+-..|.+-..+--......|..+-.
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 11 11 111223345555566654333333344455555543
No 187
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.67 E-value=0.81 Score=43.97 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC
Q 008585 295 QAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG 373 (560)
Q Consensus 295 ~~~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~ 373 (560)
...|+.+|--++ -++..+..+.....+..++.++.......++..++.+|..+..+++.+.+.+-+.+|+..+..++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 455667777666 4889999999999999999999654334899999999999998888888877789999999999977
Q ss_pred C----ccHHHHHHHHHHhhc
Q 008585 374 P----LPQESAVGALRNLVG 389 (560)
Q Consensus 374 ~----~~~~~a~~~L~nla~ 389 (560)
. +++..++.+|.-...
T Consensus 188 ~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccHHHhHHHHHHHHHHHc
Confidence 2 345556666655554
No 188
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.31 E-value=0.16 Score=31.39 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAES 226 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~ 226 (560)
+|.++++++++++++|..|+.+|+.++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998753
No 189
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.30 E-value=0.61 Score=43.15 Aligned_cols=168 Identities=15% Similarity=0.126 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcC-----CHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHH
Q 008585 378 ESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAG-----SLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKL 449 (560)
Q Consensus 378 ~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~-----~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~l 449 (560)
-+|+..|..++. ++.+..+++.++--.+..+|... -..++..+...++.+..+ ++..+.+.....+|..+++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 466777777777 56666666666655555555432 256788888999999865 6777888888999999999
Q ss_pred HccCCHHHHHHHHHHHHHhcCCChhhHH-------HhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHH
Q 008585 450 LEAKPNSVREVAAQAISSLVTLPQNCRE-------VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMI 522 (560)
Q Consensus 450 l~s~~~~v~~~A~~aL~~L~~~~~~~~~-------~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~ 522 (560)
+..+++--+..|+..+..+..++..... |..-...+..++.-+-+.+....-+.++.+...|+..+..|..+.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~ 277 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLS 277 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHh
Confidence 9999888888899888888776654322 222223334455444443334466699999999999888887664
Q ss_pred H---cChhHHHHHhhccCchhHHHHH
Q 008585 523 S---YGAIGYLKKLSEMDIPGARKLL 545 (560)
Q Consensus 523 ~---~g~i~~L~~L~~~~~~~akkl~ 545 (560)
. .|.-..--.++-.+|.|.|+-+
T Consensus 278 ~~lP~~Lrd~tfs~vl~dD~~sk~Cl 303 (315)
T COG5209 278 SKLPDGLRDDTFSLVLADDGGSKECL 303 (315)
T ss_pred ccCCccccccHHHHHHHhcCChHHHH
Confidence 3 2333333334445555666543
No 190
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=4.9 Score=41.80 Aligned_cols=252 Identities=13% Similarity=0.030 Sum_probs=130.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHH-HHHhCCChHHH
Q 008585 206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPL 283 (560)
Q Consensus 206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~-~l~~~g~i~~L 283 (560)
++++..++..|++.|++.+...+.+..-...-.+..++.-|-+ .+.+++..+..+|..+.....+.. ...=-++.-.+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 3456788999999999999874322111122245666665554 477888888888877755333222 11112333456
Q ss_pred HHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH
Q 008585 284 IEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359 (560)
Q Consensus 284 v~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~ 359 (560)
..+..+.+++++..+...+..|+. +.+.+..++| .+....++--+.+.++ -...||+.....+..+-. ++...
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p--~va~ACr~~~~~c~p~l~-rke~~ 424 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNP--YVARACRSELRTCYPNLV-RKELY 424 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCCh--HHHHHHHHHHHhcCchhH-HHHHH
Confidence 677888999999999988888874 4466666665 2222223333445553 345567776666653322 22111
Q ss_pred hCCCHHHHHHhccCCccHHHHHHHHHHhhc---cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHH
Q 008585 360 SEGGIRSLLAYLDGPLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMK 434 (560)
Q Consensus 360 ~~g~l~~L~~ll~~~~~~~~a~~~L~nla~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~ 434 (560)
+.++..+ +..-.+.. .+....|. +-.++... -.......++++.-+.++..+...-.++..+ +..+
T Consensus 425 --~~~q~~l---d~~~~~~q--~Fyn~~c~~L~~i~~d~l~--~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c 495 (533)
T KOG2032|consen 425 --HLFQESL---DTDMARFQ--AFYNQWCIQLNHIHPDILM--LLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAAC 495 (533)
T ss_pred --HHHhhhh---HHhHHHHH--HHHHHHHHHHhhhCHHHHH--HHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0111111 00000111 11111111 00111000 0011122233333456666666555555533 3334
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 435 ~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
....-.-....|-.+...+-++++..|..|+..+.
T Consensus 496 ~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 496 SSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 33322334555666667788899999999887764
No 191
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=9.2 Score=44.03 Aligned_cols=225 Identities=16% Similarity=0.195 Sum_probs=128.8
Q ss_pred hCCCHHHHHH---hh-cCCCHHHHHHHHHHHHHHhcCCchHHHHHhC--CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC
Q 008585 194 GRSNIAALVQ---LL-TATSPRIREKTVTVICSLAESGSCENWLVSE--GVLPPLIRLVESGSTVGKEKATISLQRLSMS 267 (560)
Q Consensus 194 ~~g~v~~Lv~---lL-~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 267 (560)
+++.+..+.. .. ++.+..+|..+-++|..+...++......+. .+...+..-+++.+...+...+.||..|-..
T Consensus 648 ~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 648 TESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL 727 (1176)
T ss_pred cchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 3444554442 22 3346899999999999999885533322221 2344455555556777788888888887442
Q ss_pred -h-hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcC------cHHHHHHHhhcC--CchhHH
Q 008585 268 -A-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEG------IVSVMIKLLDCG--ILLGSK 337 (560)
Q Consensus 268 -~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g------~v~~L~~lL~~~--~~~~v~ 337 (560)
+ +....+ - ..|+.++=.++..+...++.+..+|..++. .....+.| .+..++..+.-+ .+ ..+
T Consensus 728 ~~~e~~~~i-~-k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~ 800 (1176)
T KOG1248|consen 728 LSAEHCDLI-P-KLIPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGD-STR 800 (1176)
T ss_pred ccHHHHHHH-H-HHHHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhccc-HHH
Confidence 2 222222 1 123333333477788889999999988873 11222222 566666665543 21 223
Q ss_pred HHH--HHHHHHHccCChhHHHHHHhCCCHHHHHHh----ccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHH
Q 008585 338 EYA--AECLQNLTASNENLRRSVVSEGGIRSLLAY----LDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVH 407 (560)
Q Consensus 338 ~~a--~~~L~~La~~~~~~~~~i~~~g~l~~L~~l----l~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~ 407 (560)
..+ +-++..+.... ..+...+.+..+++. |.+ +.+...|++++..++. ++..-.-.....++.+..
T Consensus 801 ~~as~Ivai~~il~e~----~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ 876 (1176)
T KOG1248|consen 801 VVASDIVAITHILQEF----KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA 876 (1176)
T ss_pred HHHHHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH
Confidence 222 33344433311 122333334444444 433 6788999999999987 322222222336777888
Q ss_pred HHhcCCHHHHHHHHHHHHHHhC
Q 008585 408 VLKAGSLGAQQAAASALCRVCT 429 (560)
Q Consensus 408 lL~~~~~~v~~~A~~aL~~La~ 429 (560)
++......++...-..+-.|.+
T Consensus 877 ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 877 LSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH
Confidence 7777788888888888888874
No 192
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.91 E-value=0.16 Score=31.46 Aligned_cols=29 Identities=31% Similarity=0.427 Sum_probs=25.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~ 429 (560)
++|.++++++++++.|+..|+.+|++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37889999999999999999999999874
No 193
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=8.1 Score=42.23 Aligned_cols=153 Identities=15% Similarity=0.070 Sum_probs=102.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHH-hhcCCchhHHHHHHHHHHHHccCChhHHHHHH
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL-LDCGILLGSKEYAAECLQNLTASNENLRRSVV 359 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~l-L~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~ 359 (560)
+.+-+++.+.+|-+|...+.++.---... ...++|..|++. +.+.++ +||+.|..+|+-++..+++.
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nD-DVrRaAVialGFVl~~dp~~----- 589 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVND-DVRRAAVIALGFVLFRDPEQ----- 589 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccch-HHHHHHHHHheeeEecChhh-----
Confidence 44457778889999988776664211100 113577778887 556665 89999999999999988765
Q ss_pred hCCCHHHHHHhccC---CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh--CChhH
Q 008585 360 SEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC--TSAEM 433 (560)
Q Consensus 360 ~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La--~~~~~ 433 (560)
++..+.+|.. +-+|..+.-+|+-.|. .-..+ .+..|-.+..+...-|++-|+.++.-+- +++..
T Consensus 590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 5666777743 7789999999999887 33332 2333444445566788999998888765 23444
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHH
Q 008585 434 KKLVGEAGCTPLLIKLLEAKPNSV 457 (560)
Q Consensus 434 ~~~i~~~g~i~~Lv~ll~s~~~~v 457 (560)
.... .++.+.+.+.+..++++.
T Consensus 660 ~pkv--~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 660 CPKV--NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred CchH--HHHHHHHHHHhhhhhhHH
Confidence 4443 456677777777776653
No 194
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.78 E-value=0.89 Score=41.70 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=79.0
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC---------CCHHHHHHHHHHHHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA---------TSPRIREKTVTVICSL 223 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~---------~~~~v~~~A~~~L~~L 223 (560)
.....++..+..+.... +.+..|...+...+ .....+++.||+..|+.+|.. .+...+..++.++..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34556667776665443 55556665565544 567788889999999998863 2357888999999999
Q ss_pred hcCCchHHHHH-hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 008585 224 AESGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLS 265 (560)
Q Consensus 224 a~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 265 (560)
..+......++ ..+.+..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 98877555555 5689999999999999999999999998875
No 195
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=92.49 E-value=0.45 Score=52.64 Aligned_cols=146 Identities=20% Similarity=0.157 Sum_probs=102.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS 235 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~ 235 (560)
++.++...++.....|..-+..|..++..-|.....---....|.|++.|+-+|..+|..+..++..+....+.-..-.-
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~ 948 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL 948 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH
Confidence 45556666655666677777888888876665322111224588888999999999999999999887665442211112
Q ss_pred CCCHHHHHHhhhcCC---HHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHH
Q 008585 236 EGVLPPLIRLVESGS---TVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (560)
Q Consensus 236 ~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (560)
...+|.++.+=.+.+ ..+|+.|..||..|+. -|.+.-......+++.|+..|.++..-+|..|..+
T Consensus 949 ~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 949 STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 235677766655554 6799999999999988 46665555667778999999988877888777654
No 196
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.47 E-value=11 Score=39.12 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHh-hCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHH
Q 008585 252 VGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKL 327 (560)
Q Consensus 252 ~~~~~a~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~l 327 (560)
+-+..|..-|..+ +......|.-.-...+..+++.|.+ .++..+..|+++|..++.+...+ +.+ +-++..+++.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEIAICKVLEA 379 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHHHHHHHHHH
Confidence 3344455544444 4444455542223445678888887 78889999999999998754322 222 3345555555
Q ss_pred hhcCCchhHHHHH-HHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHH--hCCcH
Q 008585 328 LDCGILLGSKEYA-AECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLI--SLGFF 402 (560)
Q Consensus 328 L~~~~~~~v~~~a-~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~--~~~~i 402 (560)
-.+..+ ++...| =.|+.-++++.+..+ +..+..++.+ ...-..++..+..++..-..+.+. -..+.
T Consensus 380 a~ds~~-~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 380 AKDSQD-EVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HhCCch-hHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 555555 444444 445666666666543 3333444433 223344555666666533344442 35778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 403 PRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 403 ~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
|.+++.-++.+..|++.|+.+|..+.
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 89999999999999999999988876
No 197
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=3.1 Score=46.01 Aligned_cols=179 Identities=15% Similarity=0.095 Sum_probs=114.1
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcH
Q 008585 242 LIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIV 321 (560)
Q Consensus 242 Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v 321 (560)
.+..+.++...++.++...|.++....+.+..+...+++...++.+++.|+-+--.|...+..||.. .++..+
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il 804 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDIL 804 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhH
Confidence 3444556677789999999999988777777777889999999999999998888888877666642 334566
Q ss_pred HHHHHH-hhcCCc--hhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCcc--HHHHHHHHHHhhc-c--ccH
Q 008585 322 SVMIKL-LDCGIL--LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVG-S--VSQ 393 (560)
Q Consensus 322 ~~L~~l-L~~~~~--~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~--~~~a~~~L~nla~-~--~~~ 393 (560)
|-+... .+.... .+.+-..-+++.+++..-.+...... .-.+...+..+++|+. |..++..++++|. . ...
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence 766663 332211 12333444666666542222111111 1234555666666654 8889999999997 2 112
Q ss_pred HHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCC
Q 008585 394 EVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 394 ~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~ 430 (560)
+.+ ..+...++.+.+. +++-+++.|+..+..+-.+
T Consensus 884 d~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 884 DFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 221 1223444444443 5689999999999998765
No 198
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.21 E-value=0.88 Score=34.58 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhC
Q 008585 295 QAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE 361 (560)
Q Consensus 295 ~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~ 361 (560)
.+.+++++.+++..+.....+.+.++++.++++.++.+...+|-.|..+|+-++...+. .+.+.+.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G-~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG-AEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH-HHHHHHc
Confidence 46899999999998888888888899999999999777668999999999999875443 4444443
No 199
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.14 E-value=4.2 Score=45.83 Aligned_cols=184 Identities=11% Similarity=0.103 Sum_probs=122.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchHHHHHhC
Q 008585 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGSCENWLVSE 236 (560)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~ 236 (560)
.+-..+.+.+...+.+|+..+...+.+.. ........|.+..++... ++.+..+...|+.+|..++..-..-..=...
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 44455667788889999999999987544 101111123344444443 3446778888999999998754311122234
Q ss_pred CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc-hhHHH
Q 008585 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP-EVRQM 314 (560)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~-~~~~~ 314 (560)
++.+.++.-+++....++.....++.........- ...+.+..++++++|.++..+...+..... .+ .+...
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~------~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~ 409 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPLS------KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK 409 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHH------HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence 57899999999988889988888888776532222 234788899999999999887666655443 21 22222
Q ss_pred HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 315 i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
-.-.+.++.++....+.+. +||..+.+++..+..
T Consensus 410 ~t~~~l~p~~~~~~~D~~~-~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 410 ETVKTLVPHLIKHINDTDK-DVRKAALEAVAAVMK 443 (815)
T ss_pred hhHHHHhHHHhhhccCCcH-HHHHHHHHHHHHHHH
Confidence 2224577888888877776 899999998887765
No 200
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.14 E-value=3.1 Score=43.65 Aligned_cols=193 Identities=12% Similarity=0.119 Sum_probs=115.9
Q ss_pred hHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585 155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGSCENW 232 (560)
Q Consensus 155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (560)
.+..++.... ..++..+..++..+..++..-+... .+ + ..+..+..-+ ...+...+..++.++..++..--.|..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL-D-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH-H-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 5666666654 4457778888888888886522110 00 0 1233333333 233355555565555554431100000
Q ss_pred HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhh--------HHHHHh----CCChHHHHHHhccCChHHHHHHH
Q 008585 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEM--------ARAIVG----HGGVRPLIEICQTGDSVSQAAAA 299 (560)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~--------~~~l~~----~g~i~~Lv~ll~~~~~~~~~~a~ 299 (560)
=.....+..|+.+|.+ +.+...++..+.-+..+ ++. .+-+.+ ...+|.|++-.+..+...+..-.
T Consensus 267 ~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 267 PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence 0011246677777776 56778888888888766 332 112222 24567777777776666888888
Q ss_pred HHHHHhcCCchhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585 300 CTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (560)
Q Consensus 300 ~aL~nLa~~~~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~ 353 (560)
.+|.++..+-...-.+.+ ...+|.+++-|..++. +++..++.+|..+...++.
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~-~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDA-DVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHcCHH
Confidence 899998764332223333 5588999999988886 7999999999999987654
No 201
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=10 Score=42.90 Aligned_cols=234 Identities=17% Similarity=0.101 Sum_probs=125.3
Q ss_pred CCHHHHHHhhhc--------CCHHHHHHHHHHHHHhhC---ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585 237 GVLPPLIRLVES--------GSTVGKEKATISLQRLSM---SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (560)
Q Consensus 237 g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~La~---~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (560)
|.++.++.++.+ .++.-++-|..++++|+. .+..-....++-.+..++..++++..-+|..||+++...
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 355666666662 255556677777777753 111112233333445555666777778999999999999
Q ss_pred cCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHh--CCCHHHHHHhccC---CccHHH
Q 008585 306 SAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS--EGGIRSLLAYLDG---PLPQES 379 (560)
Q Consensus 306 a~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~--~g~l~~L~~ll~~---~~~~~~ 379 (560)
+.-+ .....+ ..++....+.+.++.+..|+..|+-+|..+..+.+...+.+.. .+.++.|+.+.+. .+....
T Consensus 490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 8421 222222 2355666666664444589999999999999876654343332 3345556666543 222222
Q ss_pred HHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhc---C---CHHHHHHHHHHHHHHhC---C----hhHHHHHHhcCCHH
Q 008585 380 AVGALRNLVG--SVSQEVLISLGFFPRLVHVLKA---G---SLGAQQAAASALCRVCT---S----AEMKKLVGEAGCTP 444 (560)
Q Consensus 380 a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~---~---~~~v~~~A~~aL~~La~---~----~~~~~~i~~~g~i~ 444 (560)
.-..+..++. .+....+. .+......+++.. . +..-+..|...|..+.. + ++.-+.+ +..+.+
T Consensus 568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l-e~~~l~ 645 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL-EPIVLP 645 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHH
Confidence 2222333332 11111111 2334455555653 1 23344445555544432 1 2222222 223556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCChh
Q 008585 445 LLIKLLEAKPNSVREVAAQAISSLVTLPQN 474 (560)
Q Consensus 445 ~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~ 474 (560)
.+-.+++..-.++-+.+.....++......
T Consensus 646 vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~ 675 (1010)
T KOG1991|consen 646 VIGFILKNDITDFYEELLEIVSSLTFLSKE 675 (1010)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhhhhcc
Confidence 666666666667777777777777644433
No 202
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.87 E-value=5.3 Score=45.88 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=99.9
Q ss_pred cHHHHHHHhhc----CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc--c
Q 008585 320 IVSVMIKLLDC----GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG--S 390 (560)
Q Consensus 320 ~v~~L~~lL~~----~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~--~ 390 (560)
..|.+++..++ +++ +++..|.-+|+.+..-+...+.. -++.|+.++.. |.++-+++-+++-|+. +
T Consensus 920 f~piv~e~c~n~~~~sdp-~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDP-ELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCH-HHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 34445555532 333 78999999999888755544432 37888888863 6678899999999887 3
Q ss_pred ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
... ...-+.|...|.+.++.|++.|..+|.+|--+ ..+.-.|.+..+...+.+++++++..|-.-...|+
T Consensus 994 nli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 222 33567888889999999999999999998743 23334689999999999999999999986666664
No 203
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.65 E-value=0.57 Score=41.78 Aligned_cols=111 Identities=12% Similarity=0.234 Sum_probs=79.9
Q ss_pred hchHHHHHHH-HccCCHHHHHHHHHHHHHHHhhChHHHHHHh-hCCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCc
Q 008585 153 HGNTRELLAR-LQIGHLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLT--ATSPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 153 ~~~i~~Ll~~-L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~-~~g~v~~Lv~lL~--~~~~~v~~~A~~~L~~La~~~~ 228 (560)
...+.+.+.. +..++.+....+...+..+....++....+. .+|..+.++.+.. ..+..++..++++|..-+.+..
T Consensus 41 ~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~ 120 (157)
T PF11701_consen 41 KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS 120 (157)
T ss_dssp HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH
Confidence 3334444433 3344445778888899888887777766665 5677889999998 6778888899998888887777
Q ss_pred hHHHHHhCCCHHHHHHhhhc-CCHH-HHHHHHHHHHHh
Q 008585 229 CENWLVSEGVLPPLIRLVES-GSTV-GKEKATISLQRL 264 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~-~~~~-~~~~a~~~L~~L 264 (560)
+|..+.+. +++.|-+.++. .+.. ++..|+-+|.+|
T Consensus 121 ~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 121 CRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 77777665 58999999964 4555 788888888764
No 204
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.45 E-value=0.94 Score=51.57 Aligned_cols=131 Identities=22% Similarity=0.215 Sum_probs=100.5
Q ss_pred cHHHHHHHHhc----CCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCChh
Q 008585 401 FFPRLVHVLKA----GSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTLPQN 474 (560)
Q Consensus 401 ~i~~Lv~lL~~----~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~L~~~~~~ 474 (560)
+.|.++...++ ++|++|..|.-+|++|.+ +.+++.. -+|.|+..+. ++++.+|..+..+++.++..-+|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 55666666643 569999999999999864 4555433 2888999997 88999999999999999976666
Q ss_pred hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHHHHHH
Q 008585 475 CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLE 546 (560)
Q Consensus 475 ~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~ 546 (560)
.-+ .+.+.|...|.+.+ ..+++.|+..+.+|- ...+|.-.|.+........-++++.+.+++
T Consensus 995 lie-----~~T~~Ly~rL~D~~-~~vRkta~lvlshLI----LndmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 995 LIE-----PWTEHLYRRLRDES-PSVRKTALLVLSHLI----LNDMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred ccc-----hhhHHHHHHhcCcc-HHHHHHHHHHHHHHH----HhhhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 443 44588998898864 358999999998884 344566678888888888888888777777
No 205
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=91.31 E-value=1.1 Score=34.09 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 008585 254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEG 319 (560)
Q Consensus 254 ~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g 319 (560)
...+.|++.+++..+.....+-+++.++.++++... +...+|..+..+|.-++...+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 457899999999888887777788999999999874 677899999999999999888888777654
No 206
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.31 E-value=5.8 Score=44.10 Aligned_cols=293 Identities=15% Similarity=0.123 Sum_probs=154.3
Q ss_pred HHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhh----cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC
Q 008585 215 KTVTVICSLAESGSCENWLVSEGVLPPLIRLVE----SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG 290 (560)
Q Consensus 215 ~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~ 290 (560)
..+.+|.-|.+..+.-..+.+.|. ..++-++. ..+..+.-.+...|+.|+.+...+..|+++||+..|+.+=+-
T Consensus 328 ~~~q~l~~lgey~e~lpv~~~~g~-~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~- 405 (1516)
T KOG1832|consen 328 YCIQCLEILGEYVEVLPVLHEKGV-DVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRV- 405 (1516)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCc-hhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCc-
Confidence 355666666665555555555553 33333332 224445566788888998888889999999999977665432
Q ss_pred ChHHHHHHHHHHHHhcCCchhHHHHHh------cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585 291 DSVSQAAAACTLKNISAVPEVRQMLAE------EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGI 364 (560)
Q Consensus 291 ~~~~~~~a~~aL~nLa~~~~~~~~i~e------~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l 364 (560)
.+.-.-.-.+|+.+..+.+.-+.+.. ..++..-+.+++...+ ..+.++......... ....-+.+-...++
T Consensus 406 -s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~-~~~~~~~~ff~~~f~-frail~~fd~~d~l 482 (1516)
T KOG1832|consen 406 -SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQD-QARKNSALFFAAAFV-FRAILDAFDAQDSL 482 (1516)
T ss_pred -hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchh-hccchHHHHHHHHHH-HHHHHHHHhhhhHH
Confidence 11112223455555554444333322 3455556666766554 455555444332211 11112222234567
Q ss_pred HHHHHhccC-------------Ccc--------HHHHHHHHHHhhc-------cccHHHHHhCCcHHHHHHHHhcCC---
Q 008585 365 RSLLAYLDG-------------PLP--------QESAVGALRNLVG-------SVSQEVLISLGFFPRLVHVLKAGS--- 413 (560)
Q Consensus 365 ~~L~~ll~~-------------~~~--------~~~a~~~L~nla~-------~~~~~~l~~~~~i~~Lv~lL~~~~--- 413 (560)
+.|+.++.+ ++. -...+.+|+..-. ...++.-.+.+..+..+.-+..++
T Consensus 483 ~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~ 562 (1516)
T KOG1832|consen 483 QKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPL 562 (1516)
T ss_pred HHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcc
Confidence 777777643 111 1244555554433 112223334455555555444332
Q ss_pred ---HHHHHHHHHHHHHHhCC-h-------hHHHHHHhcCCHHHHHHHHc--------cCCHHHHHHHHHHHHHhcCCChh
Q 008585 414 ---LGAQQAAASALCRVCTS-A-------EMKKLVGEAGCTPLLIKLLE--------AKPNSVREVAAQAISSLVTLPQN 474 (560)
Q Consensus 414 ---~~v~~~A~~aL~~La~~-~-------~~~~~i~~~g~i~~Lv~ll~--------s~~~~v~~~A~~aL~~L~~~~~~ 474 (560)
....+..++-+-.+... + .....+...+++..++++.. +.-.++...|..+|+.+..-+..
T Consensus 563 ~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~i 642 (1516)
T KOG1832|consen 563 DISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDI 642 (1516)
T ss_pred hhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchH
Confidence 12223333333332211 2 12344555677888888875 23345667889999888888877
Q ss_pred hHHHhhh-------CCChHHHHhccCCC--C-chhhHHHHHHHHHHhC
Q 008585 475 CREVKRD-------DKSVPNLVQLLDPS--P-QNTAKKYAVACLASLS 512 (560)
Q Consensus 475 ~~~~~~~-------~~~v~~Lv~lL~~~--~-~~~~~~~a~~~L~~L~ 512 (560)
+..+... ..++..+++.-... . ++++++.|+.++.++.
T Consensus 643 q~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincV 690 (1516)
T KOG1832|consen 643 QKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCV 690 (1516)
T ss_pred HHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheee
Confidence 7666542 12444444433332 1 3457888888887765
No 207
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.25 E-value=7.1 Score=44.91 Aligned_cols=213 Identities=18% Similarity=0.127 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHHHhhCChhhHHHHHh--CCChHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHH
Q 008585 249 GSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVM 324 (560)
Q Consensus 249 ~~~~~~~~a~~~L~~La~~~~~~~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L 324 (560)
.+..+|..+-++|..++..+.......+ ......|.+-.++.+...+...+.+|..|-. +.+.+..+.. .|+-+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHH
Confidence 3677888999999999776433222211 1222334444444455666666767666643 2244444433 34444
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCC------CHHHHHHhcc----CCccHHHH--HHHHHHhhc--c
Q 008585 325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG------GIRSLLAYLD----GPLPQESA--VGALRNLVG--S 390 (560)
Q Consensus 325 ~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g------~l~~L~~ll~----~~~~~~~a--~~~L~nla~--~ 390 (560)
+-.++..+. ..+.++..+|.+|+.. +...+.| .+...+..+. +...+..+ +-++..+.. .
T Consensus 744 IL~~Ke~n~-~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 744 ILSLKEVNV-KARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHhcccccH-HHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 444455554 7899999999999830 1111111 3444444442 22333222 333333333 1
Q ss_pred ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.....-.-.+++..+.-+|.++++++...|...+..++.. |+..-.-.....++.+..+.+.....+|......|-.|.
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1111111234566666677889999999999999998855 554444434456888888888877788888777777776
No 208
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=7.8 Score=43.97 Aligned_cols=271 Identities=17% Similarity=0.150 Sum_probs=153.2
Q ss_pred HHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC-----
Q 008585 175 LDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG----- 249 (560)
Q Consensus 175 ~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~----- 249 (560)
-+.|..+++.+.+|.+.+.+..|+..++.++-+ .+-|..-++++..|-..++.. +...-+-.+++.|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 467888899999999999999999888888733 345555666666665544310 0111255677777764
Q ss_pred ---C----HHHHHHHHHHHHHhh-CChhhHHHHHhCCChHHHHHHhccC----------ChHHHHHHHHHH---HH--hc
Q 008585 250 ---S----TVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTG----------DSVSQAAAACTL---KN--IS 306 (560)
Q Consensus 250 ---~----~~~~~~a~~~L~~La-~~~~~~~~l~~~g~i~~Lv~ll~~~----------~~~~~~~a~~aL---~n--La 306 (560)
+ .........+++++- .+...+..+.+.+|...|...|..- |.-+-..-...| .. ++
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 1 122334455666664 3456677888999999888877421 100101111111 11 23
Q ss_pred CCchhHHHHHhcCcHHHHHHHhhcCCch--hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCcc--HHHHHH
Q 008585 307 AVPEVRQMLAEEGIVSVMIKLLDCGILL--GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVG 382 (560)
Q Consensus 307 ~~~~~~~~i~e~g~v~~L~~lL~~~~~~--~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~--~~~a~~ 382 (560)
.++.|+.++...-.-+.+..+|....-. ..-......|.+++. +.+..|.. ...|+.
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElal-------------------evlvppfLtSEsaAca 878 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELAL-------------------EVLVPPFLTSESAACA 878 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHH-------------------HhhCCchhhhhHHHHH
Confidence 4556666665544445555555432200 111112222222221 00111111 011111
Q ss_pred HHHHhh---------c---cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHH
Q 008585 383 ALRNLV---------G---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKL 449 (560)
Q Consensus 383 ~L~nla---------~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~l 449 (560)
-+-.+- . .+..+.+...|++..+++.+-...+..|.+-...+..+++. +.+....-..|+++.|+++
T Consensus 879 eVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleI 958 (2799)
T KOG1788|consen 879 EVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEI 958 (2799)
T ss_pred HHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHH
Confidence 111110 0 23456778899999999998888999999999999999865 6677777777999999988
Q ss_pred Hc---cCCHHHHHHHHHHHHHhc
Q 008585 450 LE---AKPNSVREVAAQAISSLV 469 (560)
Q Consensus 450 l~---s~~~~v~~~A~~aL~~L~ 469 (560)
+. +++...-..+...+..|+
T Consensus 959 iypflsgsspfLshalkIvemLg 981 (2799)
T KOG1788|consen 959 IYPFLSGSSPFLSHALKIVEMLG 981 (2799)
T ss_pred hhhhhcCCchHhhccHHHHHHHh
Confidence 86 344444444444444444
No 209
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.73 E-value=3.2 Score=38.00 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=75.0
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC--chHHHHHhCCCHHHHHHhhhc---------CCHHHHHHHHHHHHHhh
Q 008585 197 NIAALVQLLTATSPRIREKTVTVICSLAESG--SCENWLVSEGVLPPLIRLVES---------GSTVGKEKATISLQRLS 265 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~~~~~l~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~~La 265 (560)
....+++.+....... ..+.-|...-+.. .....+++.||+..|+++|.. .+......+..|+..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4556777776654322 2222222222222 356677788999999998864 24577888999999999
Q ss_pred CChhhHHHHHh-CCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585 266 MSAEMARAIVG-HGGVRPLIEICQTGDSVSQAAAACTLKNIS 306 (560)
Q Consensus 266 ~~~~~~~~l~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (560)
.+......+.. .+++..++..+.++++.++..++..|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 88877776665 788999999999999999999999998765
No 210
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.64 E-value=5.8 Score=46.77 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=90.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHH
Q 008585 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAI 274 (560)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l 274 (560)
+.+..++..|..+.+.+|-.|+++|..+.+.++. .+....+-..+-.=+.+.+..+|+.|...+++... +++...++
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 3577788888888899999999999999987761 11111222334444667788999999999998744 46665555
Q ss_pred HhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh---cCCchhHHHHHHHHHHHHcc
Q 008585 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~---~~~~~~v~~~a~~~L~~La~ 349 (560)
. ..+.+-..+....+|..+...++.+|...+.-.. .+..+++++. ++++ .++..+..++.++..
T Consensus 894 Y-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-----i~~~cakmlrRv~DEEg-~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 894 Y-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSK-----IVDMCAKMLRRVNDEEG-NIKKLVRETFLKLWF 960 (1692)
T ss_pred H-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-----HHHHHHHHHHHhccchh-HHHHHHHHHHHHHhc
Confidence 4 4555556667788899999999988852221111 2233334333 2221 366666666666654
No 211
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=89.63 E-value=14 Score=37.68 Aligned_cols=154 Identities=11% Similarity=0.125 Sum_probs=91.8
Q ss_pred hchHHHHHHHHccCCH-HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc--C--------CCHHHHHHHHHHHH
Q 008585 153 HGNTRELLARLQIGHL-EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT--A--------TSPRIREKTVTVIC 221 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~-~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~--~--------~~~~v~~~A~~~L~ 221 (560)
......++..|..|-+ .-+..++.++.-|..+.. .-..+.....++.|+.+-+ + .+..+...+.++|+
T Consensus 44 ~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLc 122 (532)
T KOG4464|consen 44 KELGERIFEVLENGEPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLC 122 (532)
T ss_pred HHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHH
Confidence 3344456677777764 446667777766654322 1111112223444444422 1 12578889999999
Q ss_pred HHhcCCc-hHHHHHhCCCHHHHHHhhhcC-----CHHHHHHHHHHHHHhhC-ChhhHH-HHHhCCChHHHHHHhccC---
Q 008585 222 SLAESGS-CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSM-SAEMAR-AIVGHGGVRPLIEICQTG--- 290 (560)
Q Consensus 222 ~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~La~-~~~~~~-~l~~~g~i~~Lv~ll~~~--- 290 (560)
|+..+++ .+....+......+++.+... ...+...-.+.|.-++. ..+.+. .+...+|++.+...+.+.
T Consensus 123 Nlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgi 202 (532)
T KOG4464|consen 123 NLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGI 202 (532)
T ss_pred HHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccC
Confidence 9999887 677777777777777655432 22344455566666643 445554 456789999999998652
Q ss_pred C------h------HHHHHHHHHHHHhcC
Q 008585 291 D------S------VSQAAAACTLKNISA 307 (560)
Q Consensus 291 ~------~------~~~~~a~~aL~nLa~ 307 (560)
+ | +.-..++.++.|++.
T Consensus 203 dse~n~~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 203 DSEINVPPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHhheee
Confidence 1 1 123456777778864
No 212
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=3.5 Score=40.29 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=100.7
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (560)
...+...+..|.+.+.+.+.+++..+..|+..+++....... ..+-.+++-+++....+-..|+.++..+...-.. .
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~ 163 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--S 163 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--H
Confidence 445777888899999999999999999998776654433322 3466677777888888888999999888765431 2
Q ss_pred HHhCCCHHHHHH-hhhc---CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585 233 LVSEGVLPPLIR-LVES---GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS 306 (560)
Q Consensus 233 l~~~g~i~~Lv~-lL~~---~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (560)
+.+ -+..++. ++.. ++..+++.|-.+|..+..+......+ +.|+..++..++.++..++..+.+.-
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L------~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLL------RKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHH------HHHHHHHhhhchhhhhhhhccccccc
Confidence 222 2444443 3333 36778999999999997764444433 67777788888998888877665543
No 213
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=39 Score=37.45 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=41.9
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 442 CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 442 ~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
.+..+...+.-.+..+|..|..+|..+....+.... .....|.+.+.+. +++++..|-..+.++-
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE 531 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence 344445555556788999999999999744443332 2235566667765 3457777777777665
No 214
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.67 E-value=1.6 Score=48.54 Aligned_cols=186 Identities=16% Similarity=0.154 Sum_probs=114.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc--------------hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGS--------------CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR 263 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--------------~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 263 (560)
...++.+|+.+ ++-..++.++.-+..+.+ +|+.+.. .++|.+++..++.+...+..=..+|.+
T Consensus 817 a~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~-~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC-DIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH-hhHHHHHHHhccCCccchhHHHHHHHH
Confidence 44566666653 344455555555554432 2222222 468888888886666777777777877
Q ss_pred hhCChhhHHHHHh-CCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCc--hhHHHHH
Q 008585 264 LSMSAEMARAIVG-HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL--LGSKEYA 340 (560)
Q Consensus 264 La~~~~~~~~l~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~--~~v~~~a 340 (560)
.-.+-+....+-+ ...+|.|++.|.-+|+.+|..+..++.-+..-.+.-..-.-.-.+|.++.+=.+.+. ..+|+.|
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHH
Confidence 7554333221111 345678888888899999999988887665321111111113467777766554442 4789999
Q ss_pred HHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC--ccHHHHHHHHHH
Q 008585 341 AECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRN 386 (560)
Q Consensus 341 ~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~--~~~~~a~~~L~n 386 (560)
+.||..|+..-|...-.-.+..++..|...|+++ .+|..|+.+=.+
T Consensus 974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 9999999985454333344556788888888884 467777765433
No 215
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.20 E-value=5.7 Score=44.44 Aligned_cols=178 Identities=13% Similarity=0.090 Sum_probs=111.1
Q ss_pred HHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHH--HHHHhhhcCCH-H
Q 008585 177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLP--PLIRLVESGST-V 252 (560)
Q Consensus 177 ~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~--~Lv~lL~~~~~-~ 252 (560)
.+.....+++++.+.+++.||+..+...++.. +.+++..++..+.+++...+.+.......-+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 67788888999999999999999999999865 47889999999999998776544433222222 33334444343 6
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh-cCCchhHHHHHhcCcHHH-HHHHhhc
Q 008585 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI-SAVPEVRQMLAEEGIVSV-MIKLLDC 330 (560)
Q Consensus 253 ~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL-a~~~~~~~~i~e~g~v~~-L~~lL~~ 330 (560)
.-..++.+|..+..+.+. ....+ .+..+...+... ...+.....+.-...+.. +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~---------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECV---------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Ccccc---------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 667788888887654332 00001 111111111111 111111111111112222 5555554
Q ss_pred CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc
Q 008585 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372 (560)
Q Consensus 331 ~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~ 372 (560)
......+.+|++++.++...++.+.+.+.+.|+++.+...-.
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 443478999999999999988888888888998887776653
No 216
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.00 E-value=23 Score=38.19 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=82.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHHHHHh
Q 008585 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVS 235 (560)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~ 235 (560)
..++... .|+..++.-|+.-+..+.+.-|.... ..+..++.|+.+.+..+|..|++.|-.++.+. +....
T Consensus 26 ~~il~~~-kg~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--- 96 (556)
T PF05918_consen 26 KEILDGV-KGSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--- 96 (556)
T ss_dssp HHHHHGG-GS-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred HHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence 3344433 36788888888888888877665432 46788999999999999999999999999875 34444
Q ss_pred CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc---cCChHHHHHHHHHHH
Q 008585 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ---TGDSVSQAAAACTLK 303 (560)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~ 303 (560)
+.+.|+++|.++++.-...+-.+|..|-..+ .+.. +..++..+. +++..+|..+..-|.
T Consensus 97 --vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~k~t------L~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 --VADVLVQLLQTDDPVELDAVKNSLMSLLKQD-PKGT------LTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHTT---HHHHHHHHHHHHHHHHH--HHHH------HHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-cHHH------HHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 4788999999998877777777777764321 1111 244444544 467777777766553
No 217
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.93 E-value=6.4 Score=44.46 Aligned_cols=177 Identities=17% Similarity=0.138 Sum_probs=117.0
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585 285 EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGI 364 (560)
Q Consensus 285 ~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l 364 (560)
.-+.+.++.-|..|+..+......+.........|.+..+++....+....+...++.+|..|+....... .-+..+..
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-~~~~~~v~ 338 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-RKYAKNVF 338 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-HHHHHhhc
Confidence 33445678888889988888776444001111134455555554444334788889999999987543321 11234567
Q ss_pred HHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-h---hHHHHHH
Q 008585 365 RSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-A---EMKKLVG 438 (560)
Q Consensus 365 ~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~---~~~~~i~ 438 (560)
+.++..+.+ +.+++....++..++.... ....++.+..+++++++..+..+...+...... . ..+..+
T Consensus 339 p~lld~lkekk~~l~d~l~~~~d~~~ns~~-----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~- 412 (815)
T KOG1820|consen 339 PSLLDRLKEKKSELRDALLKALDAILNSTP-----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV- 412 (815)
T ss_pred chHHHHhhhccHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH-
Confidence 777777754 5566666666666554111 234577888899999999999988777776543 2 223333
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 439 EAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 439 ~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.+.+|.++....+.+.+||..|.+++.-+.
T Consensus 413 -~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 413 -KTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred -HHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 467899999998999999999999999886
No 218
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.75 E-value=13 Score=41.35 Aligned_cols=168 Identities=21% Similarity=0.237 Sum_probs=94.1
Q ss_pred CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC------CccHHHHHHHHHHhhcc--
Q 008585 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVGS-- 390 (560)
Q Consensus 319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~------~~~~~~a~~~L~nla~~-- 390 (560)
.++..+.+++.++.. .-..+...|..+......--..+ +..+..++.. +.++..|+-+++++...
T Consensus 395 ~av~~i~~~I~~~~~--~~~ea~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKL--TDDEAAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CHHHHHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 467778888877553 23335555555544221111112 4555555543 34566777777777761
Q ss_pred cc---------HHHHHhCCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC---C
Q 008585 391 VS---------QEVLISLGFFPRLVHVLK----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK---P 454 (560)
Q Consensus 391 ~~---------~~~l~~~~~i~~Lv~lL~----~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~---~ 454 (560)
.. ........+++.+...+. .++..-+..++.+|+|+... ..++.|...+... +
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccc
Confidence 11 111223445667766665 35678889999999999742 3577777777655 5
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHh
Q 008585 455 NSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASL 511 (560)
Q Consensus 455 ~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L 511 (560)
..+|..|+++|..++...++. + .+.+++++.+. .+.++|-.|+.++...
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~---v-----~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEK---V-----REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHH---H-----HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhhcCcHH---H-----HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 678999999999885433321 1 25555555443 4445777777666554
No 219
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.69 E-value=6.2 Score=41.95 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=83.1
Q ss_pred CCccHHHHHHHHHHhhc---cccHH--HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHH
Q 008585 373 GPLPQESAVGALRNLVG---SVSQE--VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLI 447 (560)
Q Consensus 373 ~~~~~~~a~~~L~nla~---~~~~~--~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 447 (560)
++..-...+.++..+.. +..++ .+ -.|++.++++-+.+.+..|+..++..|..+.....--....-.|.+..|.
T Consensus 60 ~~si~dRil~fl~~f~~Y~~~~dpeg~~~-V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~ 138 (885)
T COG5218 60 NPSIPDRILSFLKRFFEYDMPDDPEGEEL-VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLS 138 (885)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCChhhhHH-HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 35555555555555543 22222 22 24566777777778899999999999999875422222223357788888
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHH
Q 008585 448 KLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAV 505 (560)
Q Consensus 448 ~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~ 505 (560)
+-+....+.||..|..+|+++-....|-+..+ +..|+.+++..|.++++..++
T Consensus 139 ~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~-----~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 139 ERLFDREKAVRREAVKVLCYYQEMELNEENRI-----VNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhccCChHHHH-----HHHHHHHHhcCcHHHHHHHHH
Confidence 88888889999999999999975554444333 356667777666666776554
No 220
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.41 E-value=0.95 Score=42.60 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHh-------cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH-hCCCHH
Q 008585 294 SQAAAACTLKNISAVPEVRQMLAE-------EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV-SEGGIR 365 (560)
Q Consensus 294 ~~~~a~~aL~nLa~~~~~~~~i~e-------~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~-~~g~l~ 365 (560)
-|+.|+.+|+.|+..+.|-..+.. +..+..|+.++....+.-.|+.|+..|.+++..++.....+. +.+.+.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 478999999999987766655544 345667777777666557899999999999998877665554 677888
Q ss_pred HHHHhccC
Q 008585 366 SLLAYLDG 373 (560)
Q Consensus 366 ~L~~ll~~ 373 (560)
.|+.++++
T Consensus 220 ~Li~FiE~ 227 (257)
T PF12031_consen 220 HLIAFIED 227 (257)
T ss_pred HHHHHHHH
Confidence 88888865
No 221
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=87.33 E-value=3.4 Score=36.92 Aligned_cols=142 Identities=14% Similarity=0.189 Sum_probs=79.6
Q ss_pred CHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585 197 NIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275 (560)
Q Consensus 197 ~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~ 275 (560)
.++.|+++|+.+ +..+|.+++++|+.|+.-++++.+.+..+.-..- -.+.+..... ..+.+... ....+.+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~---~~l~~~~~-~~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTD---ISLPMMGI-SPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchh---hHHhhccC-CCchHHHH
Confidence 456778888766 4999999999999998887766654333211000 0000111111 11111111 11222333
Q ss_pred hCCChHHHHHHhccCChHH-HHHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585 276 GHGGVRPLIEICQTGDSVS-QAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (560)
Q Consensus 276 ~~g~i~~Lv~ll~~~~~~~-~~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La 348 (560)
-..++..|+.++++++-.. ...+..++.++.... .+...+ ..++|.++..+++.++ ..++.-..-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~-~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPD-SLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCH-HHHHHHHHHHHHHH
Confidence 3345688888888754332 345666776665322 232222 3478999999987776 77777666665553
No 222
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=87.19 E-value=32 Score=33.91 Aligned_cols=200 Identities=14% Similarity=0.136 Sum_probs=129.2
Q ss_pred HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-hhHHHHHh--cCcHHHHHHHhhcCC-chhHHHHHHHHHHHH
Q 008585 272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNL 347 (560)
Q Consensus 272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e--~g~v~~L~~lL~~~~-~~~v~~~a~~~L~~L 347 (560)
..+.+.|.++.|+..+...+-+.+..+.....|+-... +.+...++ ..-...+..++.... ..++--.+-..|.+.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 45778899999999999988999999998888885421 22222111 111222333333222 124555555555555
Q ss_pred ccCChhHHHHHHhCCCHHHHHHhccCCc--cHHHHHHHHHHhhc-c-ccHHHHHhCC----cHHHHHHHHhcCCHHHHHH
Q 008585 348 TASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVG-S-VSQEVLISLG----FFPRLVHVLKAGSLGAQQA 419 (560)
Q Consensus 348 a~~~~~~~~~i~~~g~l~~L~~ll~~~~--~~~~a~~~L~nla~-~-~~~~~l~~~~----~i~~Lv~lL~~~~~~v~~~ 419 (560)
.. .+.+.+.+..+.-......+++.|. +..-|......+.. . ....++...+ +.+.--.++++++.-+++.
T Consensus 153 ir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred Hh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 55 3666777778888888888876643 34444444444443 1 2222332222 2444667888999999999
Q ss_pred HHHHHHHHhCCh----hHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 008585 420 AASALCRVCTSA----EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472 (560)
Q Consensus 420 A~~aL~~La~~~----~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~ 472 (560)
+...++.+--+. ...+++.+..-++.++.+|+.++..+|..|-....-...++
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999987542 33455544466899999999999999999999988887543
No 223
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=86.59 E-value=57 Score=36.12 Aligned_cols=302 Identities=14% Similarity=0.135 Sum_probs=159.6
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC--------CHHHHHHHHHHHHHHhc
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--------SPRIREKTVTVICSLAE 225 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--------~~~v~~~A~~~L~~La~ 225 (560)
.++++-+..-..|..... .|+..+.......++. .+ .|.++.++..|... ++.-.+.|++.+.++..
T Consensus 371 eyirry~df~d~g~spdl-aal~fl~~~~sKrke~--Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s 445 (970)
T COG5656 371 EYIRRYYDFFDNGLSPDL-AALFFLIISKSKRKEE--TF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS 445 (970)
T ss_pred HHHHHhcchhcCCCChhH-HHHHHHHHHhcccchh--hh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Confidence 345555555455543332 3444444443333322 11 37888999988321 24445667777777755
Q ss_pred ---CCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHH
Q 008585 226 ---SGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (560)
Q Consensus 226 ---~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (560)
.++....+.+.=+++.++..+++.....+.++|..+..+..+ +++.... .+.+.....+++.+-.++..|+-|
T Consensus 446 ~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill---~aye~t~ncl~nn~lpv~ieAalA 522 (970)
T COG5656 446 FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILL---EAYENTHNCLKNNHLPVMIEAALA 522 (970)
T ss_pred HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHH---HHHHHHHHHHhcCCcchhhhHHHH
Confidence 222333444444677777788999999999999999999665 3433222 223455566777777888889999
Q ss_pred HHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC-ChhHHHHHHh--CCCHHHHHHhc----c
Q 008585 302 LKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS-NENLRRSVVS--EGGIRSLLAYL----D 372 (560)
Q Consensus 302 L~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~-~~~~~~~i~~--~g~l~~L~~ll----~ 372 (560)
+.-+-.+++....+.+ .+.++.++.+-+.-+- ++...+. ..+... .++......+ ...+++.+++. +
T Consensus 523 lq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei-D~LS~vM---e~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~e 598 (970)
T COG5656 523 LQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI-DPLSMVM---ESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLE 598 (970)
T ss_pred HHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc-hHHHHHH---HHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHc
Confidence 9888777666666655 2333444433333222 2222222 222221 1111111111 11233333332 2
Q ss_pred C--------CccHHHHHHHHHHhhc----cccHHHH---HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHH
Q 008585 373 G--------PLPQESAVGALRNLVG----SVSQEVL---ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKL 436 (560)
Q Consensus 373 ~--------~~~~~~a~~~L~nla~----~~~~~~l---~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~ 436 (560)
+ .+-+..|.+.|..+.. -++...+ .+....|.+--.|++.-...-++|+..+-+.... .+.-..
T Consensus 599 ns~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pi 678 (970)
T COG5656 599 NSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPI 678 (970)
T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhh
Confidence 2 2346678888887765 1222222 2334445555556666677778888877766532 222122
Q ss_pred HHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhc
Q 008585 437 VGEAGCTPLLIKLLEAKPN-SVREVAAQAISSLV 469 (560)
Q Consensus 437 i~~~g~i~~Lv~ll~s~~~-~v~~~A~~aL~~L~ 469 (560)
+ =|..+.+.+++.+... .--+.+..++.++.
T Consensus 679 m--wgi~Ell~~~l~~~~t~~y~ee~~~al~nfi 710 (970)
T COG5656 679 M--WGIFELLLNLLIDEITAVYSEEVADALDNFI 710 (970)
T ss_pred h--hHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence 2 1334444444444332 34466777777776
No 224
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.53 E-value=39 Score=34.16 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=110.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHh-hChHHHHHHhhC-CC-HHHHHHhhcCCC-------------HHHHHHHHHH
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMK-EDEKNVLAVMGR-SN-IAALVQLLTATS-------------PRIREKTVTV 219 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~-~~~~~~~~i~~~-g~-v~~Lv~lL~~~~-------------~~v~~~A~~~ 219 (560)
.+.+...|.+........++.-|.++.. ++....+.+... +. .+.+.+++.... +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5566666777777777788888888887 666666666643 33 556777764321 1788888887
Q ss_pred HHHHhcCCc--hHHHH-HhCCCHHHHHHhhhcCCHHHHHHHHHHHHH-hhCCh----hhHHHHHhCCChHHHHHHhccCC
Q 008585 220 ICSLAESGS--CENWL-VSEGVLPPLIRLVESGSTVGKEKATISLQR-LSMSA----EMARAIVGHGGVRPLIEICQTGD 291 (560)
Q Consensus 220 L~~La~~~~--~~~~l-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-La~~~----~~~~~l~~~g~i~~Lv~ll~~~~ 291 (560)
+..+-...+ .+..+ -+.+.+..+.+-|..+++++......+|.. +..++ ..+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 777766443 44444 456688999999999999998888888875 43333 33556777788888999887766
Q ss_pred h----HHHHHHHHHHHHhcCCch
Q 008585 292 S----VSQAAAACTLKNISAVPE 310 (560)
Q Consensus 292 ~----~~~~~a~~aL~nLa~~~~ 310 (560)
+ .+...+-..|..+|.+++
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 6 788888888888886553
No 225
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.38 E-value=47 Score=34.91 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=86.2
Q ss_pred CCCHHHHHHhh----hcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHH-HHhccCChHHHHHHHHHHHHhcC--
Q 008585 236 EGVLPPLIRLV----ESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISA-- 307 (560)
Q Consensus 236 ~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~-- 307 (560)
.|.+..++..+ .+++...+..|+.+|.+.+.. |+........ .+..++ .++...+.+++..+..+|..+..
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 34555544443 455778999999999999876 5444333221 223333 44455667888888888877653
Q ss_pred -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH-h--CCCHHHHHHhccCCcc-HHHHHH
Q 008585 308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV-S--EGGIRSLLAYLDGPLP-QESAVG 382 (560)
Q Consensus 308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~-~--~g~l~~L~~ll~~~~~-~~~a~~ 382 (560)
+.+....+.+ +.-.+..+.++.++ +++.++...++.|+.-...-.+..+ + .+...+++--|.++.+ ...|++
T Consensus 332 ~~~~l~~~~l~--ialrlR~l~~se~~-~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr 408 (533)
T KOG2032|consen 332 SNDDLESYLLN--IALRLRTLFDSEDD-KMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACR 408 (533)
T ss_pred hhcchhhhchh--HHHHHHHHHHhcCh-hhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence 2233333332 44456667777776 8999998888888762222122222 1 1222333333444433 456777
Q ss_pred HHHHhhc
Q 008585 383 ALRNLVG 389 (560)
Q Consensus 383 ~L~nla~ 389 (560)
.....|.
T Consensus 409 ~~~~~c~ 415 (533)
T KOG2032|consen 409 SELRTCY 415 (533)
T ss_pred HHHHhcC
Confidence 7776665
No 226
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.57 E-value=11 Score=33.75 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=85.3
Q ss_pred CcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHHHh
Q 008585 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLIS 398 (560)
Q Consensus 319 g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l~~ 398 (560)
..++.|+.+++++....+|..++.+|+.|..-++...+.+....- .-...-.+....... +.+.......++..-
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~~~~~~~~~~~~~---l~~~~~~~~~ee~y~ 84 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKSSENSNDESTDIS---LPMMGISPSSEEYYP 84 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccccccccccchhhH---HhhccCCCchHHHHH
Confidence 467888899988766689999999999999877764442222111 000000001111111 111111223445555
Q ss_pred CCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 399 LGFFPRLVHVLKAGS-LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 399 ~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
..++..|+..|++.+ ..-...+..++.++..+ ......+ ...+|.+++.+...+...++.-..-|+.|.
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 567888889888765 34444566676666533 2333333 346899999998777788888777777664
No 227
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.06 E-value=26 Score=40.14 Aligned_cols=278 Identities=17% Similarity=0.195 Sum_probs=162.0
Q ss_pred HccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC---CchHHHHHhCCCH
Q 008585 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES---GSCENWLVSEGVL 239 (560)
Q Consensus 163 L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~---~~~~~~l~~~g~i 239 (560)
|+..+.+.+.+.++.+..+-..+++|-...-+.--++.++--+......+|..-+++|-.-... -+.++ +
T Consensus 476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqE-------L 548 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQE-------L 548 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHH-------H
Confidence 3567777888889999999888888876666666688887777665556665555544322211 11222 2
Q ss_pred HHHHHhhhcC-CHHHHHHHHHHHHHh-hCChhhHHHHHhCCChHHHHHHhccC----ChHHHHHHHHHHH--HhcCCchh
Q 008585 240 PPLIRLVESG-STVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTG----DSVSQAAAACTLK--NISAVPEV 311 (560)
Q Consensus 240 ~~Lv~lL~~~-~~~~~~~a~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~ll~~~----~~~~~~~a~~aL~--nLa~~~~~ 311 (560)
-.|.-+|+.+ +...+........+| +.+...+..+.+-|.++.|...++.. .|+ +.....--+ |. .++..
T Consensus 549 lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qysgvsehydrnp-ss~sf 626 (2799)
T KOG1788|consen 549 LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QYSGVSEHYDRNP-SSPSF 626 (2799)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hhhhHHHHhhcCC-CCchh
Confidence 2344455554 333333334444444 55677788888999999998877641 111 111111110 11 12233
Q ss_pred HHHHHhcCcHHHHHHHhhcCCch-hHHH------HHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHH
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILL-GSKE------YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGAL 384 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~-~v~~------~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L 384 (560)
++.+-...++-.--++.+++... .+.+ ....||..|...+.++...+.+..|+..++.++-+..-+...++.+
T Consensus 627 ~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflindehRSslLriv 706 (2799)
T KOG1788|consen 627 KQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRIV 706 (2799)
T ss_pred hhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHHH
Confidence 33333333333333444443220 1111 1245677777778888888888999998888887777777777777
Q ss_pred HHhhccccHHHHHhCCcHHHHHHHHhcCC------------HHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHc
Q 008585 385 RNLVGSVSQEVLISLGFFPRLVHVLKAGS------------LGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLE 451 (560)
Q Consensus 385 ~nla~~~~~~~l~~~~~i~~Lv~lL~~~~------------~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~ 451 (560)
..+...+..+ +...-+..+++.|+++- .........+++.+. -+-..++.+.++++...|...+.
T Consensus 707 scLitvdpkq--vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 707 SCLITVDPKQ--VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred HHHhccCccc--ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence 7776511110 01234667788887632 133445566777765 33567888889988888877774
No 228
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=84.88 E-value=13 Score=40.44 Aligned_cols=252 Identities=12% Similarity=0.123 Sum_probs=148.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCchHHHHHh
Q 008585 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSCENWLVS 235 (560)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~~~~l~~ 235 (560)
..+..++..+.+.+.+-...|.+-+..-++ .++..-.++.|+..+..++ ..+..-.+..-..+.. .+ .+
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l~~~pe---~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----yq 328 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRLDNFPE---EIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----YQ 328 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----cc
Confidence 344555677777777777776664433332 2333345666666665554 2222222222112211 11 56
Q ss_pred CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML 315 (560)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (560)
.+++|.|+++++..+..+|..-..=+.+.. +.....++..-++|.+..-+.+.++.+|...+..+..|+.--. ..-
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--~~~ 404 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--KRN 404 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--hhh
Confidence 678999999999999888875443333322 2223455666777888888899999999999988887764111 111
Q ss_pred HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCC-HHHHHHhccC--CccHHHHHHHHHHhhcccc
Q 008585 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGG-IRSLLAYLDG--PLPQESAVGALRNLVGSVS 392 (560)
Q Consensus 316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~-l~~L~~ll~~--~~~~~~a~~~L~nla~~~~ 392 (560)
.....+..+..+-.+.+. .+|.+..-||+.++.+... ..+.++ +....+-+.+ ...+..++.++......-.
T Consensus 405 Ln~Ellr~~ar~q~d~~~-~irtntticlgki~~~l~~----~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 405 LNGELLRYLARLQPDEHG-GIRTNTTICLGKIAPHLAA----SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD 479 (690)
T ss_pred hcHHHHHHHHhhCccccC-cccccceeeecccccccch----hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence 122245556665555555 7899999999999875321 113333 3345555555 4557777777766665111
Q ss_pred HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
... +...+++.++-+.-+.+..++..|-.++..+-
T Consensus 480 ~~~-va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 480 QSE-VANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hhh-hhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 111 13456777777777777778877777776654
No 229
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=84.87 E-value=7.9 Score=42.26 Aligned_cols=131 Identities=17% Similarity=0.110 Sum_probs=84.0
Q ss_pred CCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHH
Q 008585 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR 356 (560)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~ 356 (560)
..+++.|..-+++.+..+|..++..+..++..-+ -.++..-++|.+-++.-..+...++.+++.|+..+...
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~------ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR------ 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH------
Confidence 4556788888888899999999999988876322 33444556788888755555458999999999998831
Q ss_pred HHHhCCCHHHHHHh---cc--CCccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHH
Q 008585 357 SVVSEGGIRSLLAY---LD--GPLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGA 416 (560)
Q Consensus 357 ~i~~~g~l~~L~~l---l~--~~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v 416 (560)
+-...+++.+..+ +. +|.+.-..+.+..++.. ......+..+.++|.++.+...+.-..
T Consensus 460 -lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 460 -LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred -HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccH
Confidence 2222234443333 32 35566666666666665 222244555677777777766655333
No 230
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.21 E-value=6.7 Score=42.64 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHH
Q 008585 399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREV 478 (560)
Q Consensus 399 ~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~ 478 (560)
.+++..+++-..+.+..|+..++..|..+.........-.-.+..+.+..-+....+.||..|..+|+.+-.++.+ .+
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-ee- 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-EE- 161 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-Cc-
Confidence 3455555566667889999999999999986422222222235567777777888899999999999999543322 11
Q ss_pred hhhCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585 479 KRDDKSVPNLVQLLDPSPQNTAKKYAVACL 508 (560)
Q Consensus 479 ~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L 508 (560)
...+..+..+++..|.++++..++..+
T Consensus 162 ---~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 162 ---CPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ---ccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 134577778888777777887765543
No 231
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=84.10 E-value=54 Score=33.65 Aligned_cols=263 Identities=12% Similarity=0.115 Sum_probs=144.5
Q ss_pred hhhHHHHHhCCChHHHHHHhccCC-hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh---cC------CchhHH
Q 008585 268 AEMARAIVGHGGVRPLIEICQTGD-SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CG------ILLGSK 337 (560)
Q Consensus 268 ~~~~~~l~~~g~i~~Lv~ll~~~~-~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~---~~------~~~~v~ 337 (560)
.+++..+. ..++.++..+. +..+..++.+++-|+.+...-.-+.....+..++.+.+ .. .+..+.
T Consensus 40 ~d~r~eL~-----e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi 114 (532)
T KOG4464|consen 40 SDDRKELG-----ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVI 114 (532)
T ss_pred hhhHHHHH-----HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHH
Confidence 34455554 66777887765 45667888899888876655544444444455555532 11 112678
Q ss_pred HHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-------CccHHHHHHHHHHhhc--cccHH-HHHhCCcHHHHHH
Q 008585 338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-------PLPQESAVGALRNLVG--SVSQE-VLISLGFFPRLVH 407 (560)
Q Consensus 338 ~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-------~~~~~~a~~~L~nla~--~~~~~-~l~~~~~i~~Lv~ 407 (560)
..++.||+|+..++...++...+......+++.+.. .++...=++.|--+.. ...+. .+.+.++++.+.+
T Consensus 115 ~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~ 194 (532)
T KOG4464|consen 115 MESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTN 194 (532)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHH
Confidence 889999999999999888888887777777776532 2344444555544444 33333 4456788888888
Q ss_pred HHhcC---------C------HHHHHHHHHHHHHHhCCh------hHHHHHHh-cCCHHHHHHHHccC--C---------
Q 008585 408 VLKAG---------S------LGAQQAAASALCRVCTSA------EMKKLVGE-AGCTPLLIKLLEAK--P--------- 454 (560)
Q Consensus 408 lL~~~---------~------~~v~~~A~~aL~~La~~~------~~~~~i~~-~g~i~~Lv~ll~s~--~--------- 454 (560)
.+.+. . .....+++.++.|+..+. ++.....- .+...+.+..+... +
T Consensus 195 ~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~ 274 (532)
T KOG4464|consen 195 WLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVN 274 (532)
T ss_pred HhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCC
Confidence 88641 1 123456677777776541 11111101 12222222222111 1
Q ss_pred --HHHHHHHHHHHHHhcCCChhhHHHh-hhCCChHHHHhccCCCCc--------hhhHHHHHHHHHHhCCChhhHHHHHH
Q 008585 455 --NSVREVAAQAISSLVTLPQNCREVK-RDDKSVPNLVQLLDPSPQ--------NTAKKYAVACLASLSPSKKCKKLMIS 523 (560)
Q Consensus 455 --~~v~~~A~~aL~~L~~~~~~~~~~~-~~~~~v~~Lv~lL~~~~~--------~~~~~~a~~~L~~L~~~~~~r~~i~~ 523 (560)
+.+....+.++...-.+......|. .+...+..+..+|...+. .+...-.+++|..++++...-+.+..
T Consensus 275 ~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr 354 (532)
T KOG4464|consen 275 LLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRKYLR 354 (532)
T ss_pred ccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 1233444444433322222222222 233344555566654421 11233456777888887765555666
Q ss_pred cChhHHHHHhhc
Q 008585 524 YGAIGYLKKLSE 535 (560)
Q Consensus 524 ~g~i~~L~~L~~ 535 (560)
...+|.|.+...
T Consensus 355 ~qVLPPLrDV~~ 366 (532)
T KOG4464|consen 355 QQVLPPLRDVSQ 366 (532)
T ss_pred HhcCCchhhhhc
Confidence 668888886643
No 232
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.68 E-value=6.1 Score=41.80 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=83.4
Q ss_pred cCcHHHHHHH-hhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhccccH
Q 008585 318 EGIVSVMIKL-LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQ 393 (560)
Q Consensus 318 ~g~v~~L~~l-L~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~~~~~ 393 (560)
.|++..+++. +.++++ +|++.|.-+|+-+|..+... +...+++|.. +-+|....-+|+-.|.....
T Consensus 550 ~~vv~~lLh~avsD~nD-DVrRAAViAlGfvc~~D~~~---------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 550 LGVVSTLLHYAVSDGND-DVRRAAVIALGFVCCDDRDL---------LVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred chhHhhhheeecccCch-HHHHHHHHheeeeEecCcch---------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 4577777777 566776 89999999999998876543 5556666643 56777778888877763222
Q ss_pred HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh--CChhHHHHHHhcCCHHHHHHHHccCCHH
Q 008585 394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC--TSAEMKKLVGEAGCTPLLIKLLEAKPNS 456 (560)
Q Consensus 394 ~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La--~~~~~~~~i~~~g~i~~Lv~ll~s~~~~ 456 (560)
+ -.+..|-.++...+.-|++.|+.+++-+. ++++.-..+ .+.++.+.+++..++++
T Consensus 620 ~-----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 620 K-----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKHES 677 (926)
T ss_pred H-----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhhHh
Confidence 1 13555666677788889999999998876 334443333 34567777777666554
No 233
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.85 E-value=4.4 Score=32.40 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=55.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (560)
....+..|++..+.+|..++..|.++..... ...+--.+.+..+...|+++++.+--.|+.+|..|+...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 5566777888888999999999999997655 1111123567788889999999999999999999987554
No 234
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=82.76 E-value=3.7 Score=38.73 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhCChhhHHHHHhCCChHH-------HHHHhc-cCChHHHHHHHHHHHHhcCCc-hhHHHHH-hcCcH
Q 008585 252 VGKEKATISLQRLSMSAEMARAIVGHGGVRP-------LIEICQ-TGDSVSQAAAACTLKNISAVP-EVRQMLA-EEGIV 321 (560)
Q Consensus 252 ~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~-------Lv~ll~-~~~~~~~~~a~~aL~nLa~~~-~~~~~i~-e~g~v 321 (560)
.-|..|..+|++|+..+.|...+...+-... |++++. .+++..|..|...|.||+..+ ..+..+. +.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4588999999999998888887776655443 444443 378899999999999999754 4554444 48899
Q ss_pred HHHHHHhhcCC
Q 008585 322 SVMIKLLDCGI 332 (560)
Q Consensus 322 ~~L~~lL~~~~ 332 (560)
..|+.++++.+
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999998755
No 235
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.39 E-value=75 Score=34.86 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=89.9
Q ss_pred CcHHHHHHHhhcCCchh-HHHHHHHHHHHH-ccCChhHHHHHHhCCCHHHHHHhccCC------ccHHHHHHHHHHhhc-
Q 008585 319 GIVSVMIKLLDCGILLG-SKEYAAECLQNL-TASNENLRRSVVSEGGIRSLLAYLDGP------LPQESAVGALRNLVG- 389 (560)
Q Consensus 319 g~v~~L~~lL~~~~~~~-v~~~a~~~L~~L-a~~~~~~~~~i~~~g~l~~L~~ll~~~------~~~~~a~~~L~nla~- 389 (560)
.++..+.+.+.++.-.. .....+..+... ...++.. +..+..++.++ .++..|+-+++++..
T Consensus 357 ~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~---------l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~ 427 (574)
T smart00638 357 PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEI---------LKALFELAESPEVQKQPYLRESALLAYGSLVRR 427 (574)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHH---------HHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 46677777777765311 112222222222 2233322 56666776542 345666777777665
Q ss_pred ---c-ccHHHHHhCCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHc---cCCHHHH
Q 008585 390 ---S-VSQEVLISLGFFPRLVHVLK----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE---AKPNSVR 458 (560)
Q Consensus 390 ---~-~~~~~l~~~~~i~~Lv~lL~----~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~---s~~~~v~ 458 (560)
. ......+...+++.+...|. .++...+..++.+|+|+... ..++.|...+. ..+..+|
T Consensus 428 ~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR 497 (574)
T smart00638 428 YCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIR 497 (574)
T ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHH
Confidence 1 11001112335666666554 34666778889999998754 22444444443 2346699
Q ss_pred HHHHHHHHHhcC-CChhhHHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHh
Q 008585 459 EVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASL 511 (560)
Q Consensus 459 ~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L 511 (560)
..|+++|..++. ++... .+.++++..+. .+.++|..|+..+...
T Consensus 498 ~~Av~Alr~~a~~~p~~v---------~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 498 LAAILALRNLAKRDPRKV---------QEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHHHhCchHH---------HHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 999999998863 22222 24455554443 4446776666665544
No 236
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.39 E-value=11 Score=30.49 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHh-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhh
Q 008585 169 EAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE 247 (560)
Q Consensus 169 ~~~~~A~~~L~~L~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~ 247 (560)
|.|..|+..+..-...+--....+. ..+.+..|++....+.+...+.++..+..+..++.....+.+-|+...|.++-.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4566777665554433222222233 334566777777777777899999999999999998899999998888777666
Q ss_pred cCCHHHHHHHHHHHH
Q 008585 248 SGSTVGKEKATISLQ 262 (560)
Q Consensus 248 ~~~~~~~~~a~~~L~ 262 (560)
.-++..+...-.++.
T Consensus 82 ~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 82 NVEPNLQAEIDEILD 96 (98)
T ss_pred cCCHHHHHHHHHHHh
Confidence 566666655544443
No 237
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=82.01 E-value=52 Score=32.00 Aligned_cols=216 Identities=16% Similarity=0.098 Sum_probs=119.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhh----ChHHHHHHh------hC-CCHHHHHHhhcCC--CHHHHHHHHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKE----DEKNVLAVM------GR-SNIAALVQLLTAT--SPRIREKTVTVIC 221 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~----~~~~~~~i~------~~-g~v~~Lv~lL~~~--~~~v~~~A~~~L~ 221 (560)
..|.-+++|++..+.+=..|+..|..+... ++..+..+. .+ |..+-+..++-.+ ++...+.++..|.
T Consensus 8 lFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~ 87 (262)
T PF14225_consen 8 LFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLS 87 (262)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHH
Confidence 467888999999888888888888887653 233333222 12 4444444443222 3456778888888
Q ss_pred HHhcCCc--------hHHHHHhCCCHHHHHHhhhcCC----HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc
Q 008585 222 SLAESGS--------CENWLVSEGVLPPLIRLVESGS----TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT 289 (560)
Q Consensus 222 ~La~~~~--------~~~~l~~~g~i~~Lv~lL~~~~----~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~ 289 (560)
.|+..+. .|-.+.=.+.+|.++.-+.+++ ...-..++..|..++.... ...+..++.....
T Consensus 88 ~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~ 160 (262)
T PF14225_consen 88 RLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAK 160 (262)
T ss_pred HHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHh
Confidence 8887543 2222222235666666666666 1334456677777763211 1122223333222
Q ss_pred -CC---hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHH
Q 008585 290 -GD---SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR 365 (560)
Q Consensus 290 -~~---~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~ 365 (560)
.. .+....++..|+.-.. |+ .+...+..++.++.++.. .++...+.+|..+-..-+..+. .....+.
T Consensus 161 ~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~-w~~~~~L~iL~~ll~~~d~~~~--~~~dlis 231 (262)
T PF14225_consen 161 GRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPP-WLRRKTLQILKVLLPHVDMRSP--HGADLIS 231 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhccccCCCC--cchHHHH
Confidence 11 1222333333332110 11 123456778888988886 8999999999998875443222 3344577
Q ss_pred HHHHhccCCccHHHHHHHHHHh
Q 008585 366 SLLAYLDGPLPQESAVGALRNL 387 (560)
Q Consensus 366 ~L~~ll~~~~~~~~a~~~L~nl 387 (560)
++++++++ +.-..|+.+|.+.
T Consensus 232 pllrlL~t-~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 232 PLLRLLQT-DLWMEALEVLDEI 252 (262)
T ss_pred HHHHHhCC-ccHHHHHHHHHHH
Confidence 77777754 2334444444443
No 238
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.88 E-value=80 Score=34.67 Aligned_cols=203 Identities=17% Similarity=0.152 Sum_probs=107.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc----hHHHHHhCC---CHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--h
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGS----CENWLVSEG---VLPPLIRLVESGSTVGKEKATISLQRLSMS--A 268 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~~~l~~~g---~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~ 268 (560)
+-.|+++|+.-+.+-.+....-+.. .. .. ..+.+...| .+..+.+.+.++..... .++..+..+... .
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~ 389 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARY 389 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhc
Confidence 5567777766554433333333322 11 11 334444445 45556666666543222 223333333211 2
Q ss_pred hhHHHHHhCCChHHHHHHhcc----CChHHHHHHHHHHHHhc----CCchhHHHHHhcCcHHHHHHHhhc----CCchhH
Q 008585 269 EMARAIVGHGGVRPLIEICQT----GDSVSQAAAACTLKNIS----AVPEVRQMLAEEGIVSVMIKLLDC----GILLGS 336 (560)
Q Consensus 269 ~~~~~l~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLa----~~~~~~~~i~e~g~v~~L~~lL~~----~~~~~v 336 (560)
+....+ ..+..++.+ ..+.++..+.-+++++. .+.+.+...+-...++.+...+.. ++. +.
T Consensus 390 Pt~~~l------~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~ 462 (574)
T smart00638 390 PTEEIL------KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE-EE 462 (574)
T ss_pred CCHHHH------HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc-hh
Confidence 222222 666677765 34566677776666664 222222122223356666666543 333 45
Q ss_pred HHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc-C----CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc
Q 008585 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA 411 (560)
Q Consensus 337 ~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~-~----~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~ 411 (560)
+...+.+|+|+..... +..+..++. + +.+|..|+++|+.++.... ..+.+.++.+..+
T Consensus 463 ~~~~LkaLGN~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p------~~v~~~l~~i~~n 525 (574)
T smart00638 463 IQLYLKALGNAGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP------RKVQEVLLPIYLN 525 (574)
T ss_pred eeeHHHhhhccCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc------hHHHHHHHHHHcC
Confidence 6678888998875322 344555554 2 3478999999998875111 1235556666655
Q ss_pred --CCHHHHHHHHHHHHHH
Q 008585 412 --GSLGAQQAAASALCRV 427 (560)
Q Consensus 412 --~~~~v~~~A~~aL~~L 427 (560)
.+++++..|..+|...
T Consensus 526 ~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 526 RAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCChHHHHHHHHHHHhc
Confidence 4588888888777664
No 239
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.54 E-value=14 Score=36.04 Aligned_cols=179 Identities=17% Similarity=0.130 Sum_probs=104.5
Q ss_pred HHHHHHhccC--CccHHHHHHHHHHhhcc-ccHHHHHhCC--cHHHHHHHHhc----CCHHHHHHHHHHHHHHhCChhHH
Q 008585 364 IRSLLAYLDG--PLPQESAVGALRNLVGS-VSQEVLISLG--FFPRLVHVLKA----GSLGAQQAAASALCRVCTSAEMK 434 (560)
Q Consensus 364 l~~L~~ll~~--~~~~~~a~~~L~nla~~-~~~~~l~~~~--~i~~Lv~lL~~----~~~~v~~~A~~aL~~La~~~~~~ 434 (560)
...+...+.. ++.+.+++..++-++.. .....+...+ ....+...+.. ..+..+..++++++|+-.++..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3445555555 56789999999999883 3333333332 24555555543 45889999999999999888888
Q ss_pred HHHHhcC--CHHHHHHHHccC----CHHHHHHHHHHHHHhcCCC--hh--hHHHhhhCCChHHHHh-ccCCCCchhhHHH
Q 008585 435 KLVGEAG--CTPLLIKLLEAK----PNSVREVAAQAISSLVTLP--QN--CREVKRDDKSVPNLVQ-LLDPSPQNTAKKY 503 (560)
Q Consensus 435 ~~i~~~g--~i~~Lv~ll~s~----~~~v~~~A~~aL~~L~~~~--~~--~~~~~~~~~~v~~Lv~-lL~~~~~~~~~~~ 503 (560)
..+.+.. .+...+..+... +..+|..++..+.|++..- .+ ..... ..+..+++ +.....+++...-
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~---~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS---ELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH---HHHHHHHHHCHCCHTSHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH---HHHHHHHHHhccccCCHHHHHH
Confidence 7776543 233333333333 6779999999999998211 11 11111 12455556 3333244455657
Q ss_pred HHHHHHHhCCChhhHHHHHH-cChhHHHHHhhc-cCchhHHHHH
Q 008585 504 AVACLASLSPSKKCKKLMIS-YGAIGYLKKLSE-MDIPGARKLL 545 (560)
Q Consensus 504 a~~~L~~L~~~~~~r~~i~~-~g~i~~L~~L~~-~~~~~akkl~ 545 (560)
.+.++.+|...+.....+.. .|+-..+.+..+ ...+..|++.
T Consensus 222 ~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 77888888765655444444 455555555543 2234444443
No 240
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.39 E-value=4.9 Score=39.29 Aligned_cols=144 Identities=17% Similarity=0.114 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHhCC--CHHHHHHhhhc----CCHHHHHHHHHHHHHhhCChhhHHHHHhCC--ChHHH
Q 008585 212 IREKTVTVICSLAESGSCENWLVSEG--VLPPLIRLVES----GSTVGKEKATISLQRLSMSAEMARAIVGHG--GVRPL 283 (560)
Q Consensus 212 v~~~A~~~L~~La~~~~~~~~l~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~~~~~~~~l~~~g--~i~~L 283 (560)
-+--++..++.+..++.....+...+ ....+..++.. .++..+..+++++.|+..++..+..+.++. .+...
T Consensus 79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~ 158 (268)
T PF08324_consen 79 SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILEL 158 (268)
T ss_dssp C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHH
T ss_pred cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHH
Confidence 34455566666666666544544433 24444444433 467788899999999988888887777644 34444
Q ss_pred HHHhccC----ChHHHHHHHHHHHHhcCCc-hhH-HHHHhcCcHHHHHHHhh-cCCchhHHHHHHHHHHHHccCChhHH
Q 008585 284 IEICQTG----DSVSQAAAACTLKNISAVP-EVR-QMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLR 355 (560)
Q Consensus 284 v~ll~~~----~~~~~~~a~~aL~nLa~~~-~~~-~~i~e~g~v~~L~~lL~-~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (560)
+.-+... +..++..++..+.|++..- ..+ ..-.....+..+.+.+. ...+.++.+.++.+|+++...++..+
T Consensus 159 ~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 159 LSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp CHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 4444433 6788999999999997411 000 00000113455555332 32334899999999999998666543
No 241
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=81.25 E-value=12 Score=33.59 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=68.6
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc---CChhH
Q 008585 280 VRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA---SNENL 354 (560)
Q Consensus 280 i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~---~~~~~ 354 (560)
+..+..++++.++..|-.++..+.-++...+ .+.+.+ ..-+..+++++++.++..+.+.++.+|..|.. +.++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 4567788888888888888777777665321 234433 33577888889887776788888888888765 33443
Q ss_pred HHHHHh---CCCHHHHHHhccCCccHHHHHHHHHHhhc
Q 008585 355 RRSVVS---EGGIRSLLAYLDGPLPQESAVGALRNLVG 389 (560)
Q Consensus 355 ~~~i~~---~g~l~~L~~ll~~~~~~~~a~~~L~nla~ 389 (560)
.+.+.- .+.++.++++++++...+.++.+|..+..
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 333332 12344445545444556666666666654
No 242
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=81.25 E-value=6.3 Score=31.53 Aligned_cols=71 Identities=10% Similarity=0.021 Sum_probs=55.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~ 353 (560)
...+..+.++.+.+|.+++..|++|..... .......+++..+...++++++ .+--+|..+|..|+...+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~Ds-yVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDS-YVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHChH
Confidence 445566778888999999999999986544 2222235678888888999887 8999999999999986554
No 243
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=80.97 E-value=59 Score=33.47 Aligned_cols=158 Identities=18% Similarity=0.104 Sum_probs=87.2
Q ss_pred HHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc-cC----Ccc
Q 008585 302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-DG----PLP 376 (560)
Q Consensus 302 L~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll-~~----~~~ 376 (560)
+-||+-.+ .-..+.|..-.+.+-.-++..+....|..|+..|..++...+..-..++ .+.+..++.-. .+ ..-
T Consensus 194 ~Pnl~~~e-~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 194 FPNLCLRE-EDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp HHHHS--H-HHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHH
T ss_pred cCccCCCH-HHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHH
Confidence 44555442 3344555566666666665433336788899999999864322111111 11233322211 12 245
Q ss_pred HHHHHHHHHHhhccc--------------cHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCC
Q 008585 377 QESAVGALRNLVGSV--------------SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGC 442 (560)
Q Consensus 377 ~~~a~~~L~nla~~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~ 442 (560)
++.|+..++.++... +-..+....++|-|. -=.+..|-++..|++.+..+-..- .+..+ .+.
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~ 347 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQI 347 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHH
Confidence 788999999999721 112223333333333 111345788899999998887541 11222 246
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 008585 443 TPLLIKLLEAKPNSVREVAAQAI 465 (560)
Q Consensus 443 i~~Lv~ll~s~~~~v~~~A~~aL 465 (560)
+|.+++.+.+++.-|+..|+.++
T Consensus 348 ~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 348 FPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhhhhhhC
Confidence 99999999999999999998775
No 244
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=80.92 E-value=53 Score=31.34 Aligned_cols=135 Identities=20% Similarity=0.145 Sum_probs=80.8
Q ss_pred HHHH-hhcCCCHHHHHHHHHHHHHHhcCC-chHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhC
Q 008585 200 ALVQ-LLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH 277 (560)
Q Consensus 200 ~Lv~-lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~ 277 (560)
.|+. +-+..+++.+...+..|..++.++ .+... ++..+..+.+.+....+..+.+.+..+-...+-..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----- 73 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----- 73 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence 3444 445567999999999999999887 43333 34555555666666665566666666643222111
Q ss_pred CChHHHHHHh--------c--cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh-hcCCchhHHHHHHHHHHH
Q 008585 278 GGVRPLIEIC--------Q--TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAAECLQN 346 (560)
Q Consensus 278 g~i~~Lv~ll--------~--~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL-~~~~~~~v~~~a~~~L~~ 346 (560)
+.+..++..+ . +...+.....+.++..++..... .....++.+..++ ++.++ .++..++..|..
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~-~~~alale~l~~ 148 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDE-VAQALALEALAP 148 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccH-HHHHHHHHHHHH
Confidence 2233333331 1 11234445556677777753322 1223577777778 55554 789999999999
Q ss_pred Hcc
Q 008585 347 LTA 349 (560)
Q Consensus 347 La~ 349 (560)
++.
T Consensus 149 Lc~ 151 (234)
T PF12530_consen 149 LCE 151 (234)
T ss_pred HHH
Confidence 984
No 245
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=80.75 E-value=58 Score=31.70 Aligned_cols=214 Identities=18% Similarity=0.159 Sum_probs=118.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc--CCHHHHHHHHHHHHHhhCChhhHHHHHhC
Q 008585 200 ALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES--GSTVGKEKATISLQRLSMSAEMARAIVGH 277 (560)
Q Consensus 200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~La~~~~~~~~l~~~ 277 (560)
.|-..|.++++.+|..|+..|+.+...-+.. . ....-+..|++...+ .+......++..+..|.......... ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~ 79 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AV 79 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HH
Confidence 4556788899999999999999886643311 0 112225556655443 24444444466666664322111100 00
Q ss_pred CChHHHHHHh--ccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585 278 GGVRPLIEIC--QTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (560)
Q Consensus 278 g~i~~Lv~ll--~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~ 353 (560)
..+..+.+-. ++.....|..+...|..+..+ ....+.+ ...+..++++++.+.++.....+...+..+...-+
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 1112222211 122345677888888887653 2222332 35778888888776655566666666666654322
Q ss_pred HHHHHHhCCCHHHHHHhccC--------C--c----cHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHH
Q 008585 354 LRRSVVSEGGIRSLLAYLDG--------P--L----PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQ 418 (560)
Q Consensus 354 ~~~~i~~~g~l~~L~~ll~~--------~--~----~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~ 418 (560)
. ....+.+...+.. | + .++.-...|++.-. ... ...-.++.|++-|.++.+.++.
T Consensus 157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~----fa~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL----FAPFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh----hHHHHHHHHHHHHcCCCcHHHH
Confidence 1 2334455554421 1 1 23333334433332 111 1234689999999999999999
Q ss_pred HHHHHHHHHhC
Q 008585 419 AAASALCRVCT 429 (560)
Q Consensus 419 ~A~~aL~~La~ 429 (560)
.++.+|...+.
T Consensus 227 D~L~tL~~c~~ 237 (262)
T PF14500_consen 227 DSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 246
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.42 E-value=7.1 Score=34.17 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=60.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~ 469 (560)
.+..|.+-|.++++.++..|+..|-.+..+ ..++..+....++..|++++.. .+..|+...+..+...+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 467777778889999999999999999855 7788899888999999999987 78889999999998886
No 247
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.36 E-value=30 Score=37.06 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=68.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275 (560)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~ 275 (560)
|.+..+++.+.+.+..+|..++.+|..+...-.--+...-.|.+..|..-+-+..+.+|..|..+|+++-....+-.-..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~ 170 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI 170 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH
Confidence 56777888888889999999999999887654322233444566666665666678899999999998854333322111
Q ss_pred hCCChHHHHHHhcc-CChHHHHHHHHHHHHhcC
Q 008585 276 GHGGVRPLIEICQT-GDSVSQAAAACTLKNISA 307 (560)
Q Consensus 276 ~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~ 307 (560)
...|+.+++. ++.++|+.|+ .|+..
T Consensus 171 ----~n~l~~~vqnDPS~EVRr~al---lni~v 196 (885)
T COG5218 171 ----VNLLKDIVQNDPSDEVRRLAL---LNISV 196 (885)
T ss_pred ----HHHHHHHHhcCcHHHHHHHHH---HHeee
Confidence 1345555553 5667776654 45543
No 248
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=79.71 E-value=30 Score=31.05 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=71.6
Q ss_pred hhhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCC--CHHHHHHhhcCCC-HHHHHHHHHHHHHHhc
Q 008585 149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRS--NIAALVQLLTATS-PRIREKTVTVICSLAE 225 (560)
Q Consensus 149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g--~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~ 225 (560)
......++..+.+.|++.+++.+..++.-+...+..++. ..+.+.+ .+..+++.|+.++ +.+.+.++.+|..+-.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 445566777888888999999998888888777766532 2232333 3888999998865 6778888877777754
Q ss_pred ----CCchHHHHHhCC---CHHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 008585 226 ----SGSCENWLVSEG---VLPPLIRLVESGSTVGKEKATISLQRLS 265 (560)
Q Consensus 226 ----~~~~~~~l~~~g---~i~~Lv~lL~~~~~~~~~~a~~~L~~La 265 (560)
.++..+.+.... .++.+++++++ ......+..+|..+-
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 334333333322 34444445543 345556666666653
No 249
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=78.95 E-value=4.1 Score=35.76 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=60.7
Q ss_pred HHHHHhHHHHHhhhcccCccchhhHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008585 22 HAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEK 98 (560)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~f~~~~~~i~~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~c~~~~ 98 (560)
...+|...++.++..+..|+.-...+.+.++.+.-...++-....-.++|- ++.+..+.++|+++.+|+.+|...+
T Consensus 14 ~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~-~ee~e~L~~~L~~g~~LV~k~sk~~ 89 (147)
T PF05659_consen 14 VFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPR-QEEIERLKELLEKGKELVEKCSKVR 89 (147)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCch-hHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456778888999999999998888888888888777766654444455564 6999999999999999999996544
No 250
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=78.16 E-value=9.8 Score=33.07 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=58.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s------~~~~v~~~A~~aL~~L~ 469 (560)
.+..+.+-|+++++.++..|+..|-.+..+ ..++..+...+++..|++++.. .+..|+...+..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 466777888899999999999999998854 7888999999999999999953 46789999888887775
No 251
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=77.55 E-value=13 Score=32.43 Aligned_cols=73 Identities=22% Similarity=0.168 Sum_probs=59.7
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~ 225 (560)
+..++.+..+|+++++.++..|+..|-.+.+.. +.....+...+.+..|+.+++. .++.+++.++..+..-+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 445788889999999999999998888888764 4566677777889999999974 568999999998887765
No 252
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.35 E-value=14 Score=31.81 Aligned_cols=69 Identities=19% Similarity=0.110 Sum_probs=58.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc---CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA---KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s---~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|+++++.++..|+..|-.+..+ ..++..+....++..|++++.. .+..++..+...+...+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 477778888899999999999999999865 6688888887888889999975 47789999999998886
No 253
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.15 E-value=12 Score=32.69 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=59.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|.++++.+|..|+..|-.+..+ ..+...+.+.+++..|++++. ..++.|+..++..+..-+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 477777888899999999999999998855 778888989999999999997 466789999999888876
No 254
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.96 E-value=24 Score=28.57 Aligned_cols=92 Identities=24% Similarity=0.164 Sum_probs=62.6
Q ss_pred HHHHHHHH-HHHHHhcCCchHHHHH-hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc
Q 008585 211 RIREKTVT-VICSLAESGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ 288 (560)
Q Consensus 211 ~v~~~A~~-~L~~La~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~ 288 (560)
++|..|+. +...+-..--+...++ ....+..|++..+..+......+...+.++..++.....+.+.|+++.|-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 45666653 3333333222223333 445677788888888888899999999999999999999999999988766665
Q ss_pred cCChHHHHHHHHHH
Q 008585 289 TGDSVSQAAAACTL 302 (560)
Q Consensus 289 ~~~~~~~~~a~~aL 302 (560)
.-++..+...-.++
T Consensus 82 ~~~~~~~~~id~il 95 (98)
T PF14726_consen 82 NVEPNLQAEIDEIL 95 (98)
T ss_pred cCCHHHHHHHHHHH
Confidence 56666665554444
No 255
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=75.93 E-value=1.9e+02 Score=35.01 Aligned_cols=138 Identities=13% Similarity=0.098 Sum_probs=90.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWL 233 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l 233 (560)
++..++..|.......|.+|+++|..+..-++.- ......-..+-.=+..+...+|+.|+..++...-. ++.-.+.
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 4556667777777788999999999998877632 11112222333344555689999999999977543 3332222
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc---cCChHHHHHHHHHHHHh
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ---TGDSVSQAAAACTLKNI 305 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~nL 305 (560)
...+..=+.+....+|..+..+++.++...+.-..+. ..+.++++ ++...++..+..++.++
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 3445555566788899999999999988644433332 34445554 34444888888888887
No 256
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=75.41 E-value=89 Score=30.96 Aligned_cols=195 Identities=10% Similarity=0.059 Sum_probs=130.0
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhh--CCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCch
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG--RSNIAALVQLLTAT--SPRIREKTVTVICSLAESGSC 229 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~--~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~~ 229 (560)
.....++..+..++-+.+..++.....+...+-..+...++ ..-.+.+-.+++.. .+++--.+-..+.....++..
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~L 158 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFL 158 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 34677889999999999999988888887644322211111 01222333333332 245555555556666666666
Q ss_pred HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCC----hHHHHHHhccCChHHHHHHHHHHHH
Q 008585 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGG----VRPLIEICQTGDSVSQAAAACTLKN 304 (560)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~----i~~Lv~ll~~~~~~~~~~a~~aL~n 304 (560)
.+.+..+.-+......++.++-++..-|..+...+-. +.....++...+. ...--.++++++-.+++.+...|+.
T Consensus 159 akiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ 238 (342)
T KOG1566|consen 159 AKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGE 238 (342)
T ss_pred HHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHH
Confidence 6677777778888888888877777778888777743 4444444444332 2234567788899999999999999
Q ss_pred hcCCchhHHH----HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 305 ISAVPEVRQM----LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 305 La~~~~~~~~----i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
+-.+..|... +.+...+..++.+|.+... .+|..|.....-...
T Consensus 239 llldr~N~~~M~kYiss~enLKlmM~llrdksk-niQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 239 LLLDRSNSAVMTKYISSPENLKLMMNLLRDKSK-NIQLEAFHVFKVFVA 286 (342)
T ss_pred HHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccc-cchHHHHHHHHHHhc
Confidence 8754444433 4445678999999999886 899999988887776
No 257
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.39 E-value=1.4e+02 Score=33.10 Aligned_cols=180 Identities=14% Similarity=0.066 Sum_probs=109.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcC--Cchh----HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISA--VPEV----RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~----~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (560)
|.|.+-|+..+..+|.+|+..+.++-. +|+. ...+.+ .-...+.++|+++-+ .+|..|..-+..+.+ ..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p-~VRS~a~~gv~k~~s---~f 251 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYP-MVRSTAILGVCKITS---KF 251 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCc-hHHHHHHHHHHHHHH---HH
Confidence 455566777899999999999999853 4433 333443 345778899998887 788888776666653 22
Q ss_pred HHHHHhCCCHHHHHHh-ccC------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008585 355 RRSVVSEGGIRSLLAY-LDG------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV 427 (560)
Q Consensus 355 ~~~i~~~g~l~~L~~l-l~~------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L 427 (560)
.+ ++-...+-.++.. +++ .++|......|..+........+.+. +++.+-..|.+.+..|+..+...|..+
T Consensus 252 We-~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 252 WE-MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HH-HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH-HHHhcchhhhccchhHHHHHHHHHHHH
Confidence 33 2222233333333 332 46777777777777773333333333 255666677778889999988888877
Q ss_pred hCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 428 CTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 428 a~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
-.... -.+..---++.++.-|.+.+..+...-+..+.+.+
T Consensus 330 k~vra--~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 330 KAVRA--AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred Hhhhh--hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 42211 11222223556666666666666555555555554
No 258
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=75.13 E-value=85 Score=30.56 Aligned_cols=210 Identities=15% Similarity=0.118 Sum_probs=117.5
Q ss_pred HHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchHHHHHhCCC
Q 008585 161 ARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGSCENWLVSEGV 238 (560)
Q Consensus 161 ~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~ 238 (560)
..|.+.+...|.+|+..|..++..-+... ....-+..|+....+ .|......++.++..|........ +.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~-----~~ 77 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP-----ES 77 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-----hh
Confidence 45678889999999999999987666332 233345666665433 345555555777777775443111 11
Q ss_pred HHHHHHhh-h-----cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchh
Q 008585 239 LPPLIRLV-E-----SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEV 311 (560)
Q Consensus 239 i~~Lv~lL-~-----~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~ 311 (560)
...+++.+ + +-....|..+...+..+..+....-.-...+.+..+++.+.. .||+-...+...+..+...-+.
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 33333322 2 224456777888888886542211111123456777777765 6888887777777766542221
Q ss_pred HHHHHhcCcHHHHHHHhh--------c--CCc-hhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHH
Q 008585 312 RQMLAEEGIVSVMIKLLD--------C--GIL-LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQE 378 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~--------~--~~~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~ 378 (560)
....+.+.+.+. . +++ .-.++.-...|.+.-..++..... .++.|++-|++ +.++.
T Consensus 158 ------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~-----~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 158 ------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPF-----AFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred ------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHH-----HHHHHHHHHcCCCcHHHH
Confidence 122233333331 1 111 113344444444444444443322 37888888876 55777
Q ss_pred HHHHHHHHhhc
Q 008585 379 SAVGALRNLVG 389 (560)
Q Consensus 379 ~a~~~L~nla~ 389 (560)
.++.+|..++.
T Consensus 227 D~L~tL~~c~~ 237 (262)
T PF14500_consen 227 DSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHH
Confidence 88888877765
No 259
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.02 E-value=21 Score=35.15 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=92.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~ 359 (560)
...+..|.+.++.....++..+..|+. +++....+.. ..+..+++-+++... .|-..|+.++..|...... .+.
T Consensus 91 ~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS-~VsraA~~t~~difs~ln~---~i~ 165 (334)
T KOG2933|consen 91 KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRS-AVSRAACMTLADIFSSLNN---SID 165 (334)
T ss_pred HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHH---HHH
Confidence 445566777888999899999988886 3343333333 255666777777766 7899999999999873322 222
Q ss_pred hCCCHHHHHHhccC------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 360 SEGGIRSLLAYLDG------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 360 ~~g~l~~L~~ll~~------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
+ -+..++..|-. .-+++.|-.+|..+..+..+. .+++.|...+++.++.++..++....+..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-----KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-----HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2 24444444421 346889999999998754443 24778888888999999888887666654
No 260
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=74.36 E-value=1.4e+02 Score=32.79 Aligned_cols=162 Identities=19% Similarity=0.136 Sum_probs=93.1
Q ss_pred HccCCHHHHHHHHHHHHHHHhhChHHHHHHhhC---CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCH
Q 008585 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR---SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL 239 (560)
Q Consensus 163 L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~---g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i 239 (560)
+..-..+.+.-|++.|+-+..+...+-..+-.+ ..+..++..++ .++..+..++++|.|+-.++..++.+... .
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~ 629 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--L 629 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--H
Confidence 333445556667777777766544333222212 23445555554 45788899999999998886666665543 2
Q ss_pred HHHHHhh----hcCCHHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCC
Q 008585 240 PPLIRLV----ESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISAV 308 (560)
Q Consensus 240 ~~Lv~lL----~~~~~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~ 308 (560)
..+...+ ...+..++...+....|++. ..++. +.++.+.+...+.. ++-+.....+.||.+|+..
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 2222222 12244555544444444432 11111 13444555544432 2334567788899999988
Q ss_pred chhHHHHHhcCcHHHHHHHhhcC
Q 008585 309 PEVRQMLAEEGIVSVMIKLLDCG 331 (560)
Q Consensus 309 ~~~~~~i~e~g~v~~L~~lL~~~ 331 (560)
+.....+...--+..+++-+++.
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHh
Confidence 88888888777778888777653
No 261
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.27 E-value=25 Score=37.42 Aligned_cols=121 Identities=11% Similarity=0.115 Sum_probs=72.5
Q ss_pred CCHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHH
Q 008585 196 SNIAALVQL-LTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARA 273 (560)
Q Consensus 196 g~v~~Lv~l-L~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~ 273 (560)
|.|..|+.. .+..+.++|..|+.+|+.++.++. +.++..+++|.. .++.+|...+.+|.--+.....+..
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a 622 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA 622 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH
Confidence 446666665 556678888888888888877653 245566666654 4777887777777766554333322
Q ss_pred HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCC
Q 008585 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGI 332 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~ 332 (560)
+ ..|-.+..+.+.-+|..|+.++.-+.. +++.-... .+++.-+..++.+.+
T Consensus 623 ~------diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 623 T------DILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred H------HHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence 2 334455556777788888888776642 33322222 134455555554443
No 262
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=73.01 E-value=60 Score=29.63 Aligned_cols=139 Identities=19% Similarity=0.179 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcC-Cc-----hHHHHHhC------CCHHHHHH-hhhcCCHHHHHHHHHHHHHhhCChhhHHHHHh--
Q 008585 212 IREKTVTVICSLAES-GS-----CENWLVSE------GVLPPLIR-LVESGSTVGKEKATISLQRLSMSAEMARAIVG-- 276 (560)
Q Consensus 212 v~~~A~~~L~~La~~-~~-----~~~~l~~~------g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~-- 276 (560)
+|..|+.+|..++.. +. +...++=. ..-+.|+. ++.+.++.+|..|+.++..|-.....--..++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 577888888888876 31 33333322 23444444 56778999999999999988554321111111
Q ss_pred ---CCC---------------hHHHHHHhcc-CChHHHHHHHHHHHHhcCC-c--hhHHHHHhcCcHHHHHHHhhcCCch
Q 008585 277 ---HGG---------------VRPLIEICQT-GDSVSQAAAACTLKNISAV-P--EVRQMLAEEGIVSVMIKLLDCGILL 334 (560)
Q Consensus 277 ---~g~---------------i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~-~--~~~~~i~e~g~v~~L~~lL~~~~~~ 334 (560)
.+. =..|+..+.. .++.+....+.+|..+..+ | .....+.. ..+..+..++.+.+.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~- 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDP- 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCC-
Confidence 111 1224444443 4566777777888777653 2 23222222 245556666677776
Q ss_pred hHHHHHHHHHHHHccCCh
Q 008585 335 GSKEYAAECLQNLTASNE 352 (560)
Q Consensus 335 ~v~~~a~~~L~~La~~~~ 352 (560)
.++..++.+++.+....+
T Consensus 160 ~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQP 177 (182)
T ss_pred cHHHHHHHHHHHHHcCCC
Confidence 899999999998876443
No 263
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=72.75 E-value=1.4e+02 Score=33.01 Aligned_cols=190 Identities=17% Similarity=0.119 Sum_probs=101.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-c-hHHHHHhCCCHHHHHHhhhc----CCHHHHHHHHHHHHHhhC----
Q 008585 197 NIAALVQLLTATSPRIREKTVTVICSLAESG-S-CENWLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLSM---- 266 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~-~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La~---- 266 (560)
.+..+.+++........ .|...|..+.... . ..+ .+..+..+++. .++.++..|.-++..|..
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 37777788877543222 2444555554433 1 222 34555555553 356677777777666643
Q ss_pred Ch------hhHHHHHhCCChHHHHHHhc----cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcC--Cch
Q 008585 267 SA------EMARAIVGHGGVRPLIEICQ----TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG--ILL 334 (560)
Q Consensus 267 ~~------~~~~~l~~~g~i~~Lv~ll~----~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~--~~~ 334 (560)
.. ...........++.+...|. .++..-+..++.+|+|+.. ...++.+..++... .+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 21 11122223445666666665 3566778889999999864 23678888887765 224
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHh
Q 008585 335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK 410 (560)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~ 410 (560)
.+|..|+.+|..++...+... .+.++.++.+ +++|..|..+|...- +. ...+..+...+.
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~~-P~-------~~~l~~i~~~l~ 602 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRCN-PS-------PSVLQRIAQSLW 602 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT-----------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhcC-CC-------HHHHHHHHHHHh
Confidence 789999999998877655322 3455666544 456666655544431 11 124666666665
Q ss_pred c-CCHHHHHH
Q 008585 411 A-GSLGAQQA 419 (560)
Q Consensus 411 ~-~~~~v~~~ 419 (560)
. .+..|...
T Consensus 603 ~E~~~QV~sf 612 (618)
T PF01347_consen 603 NEPSNQVASF 612 (618)
T ss_dssp T-S-HHHHHH
T ss_pred hCchHHHHHH
Confidence 4 34554433
No 264
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=72.73 E-value=22 Score=30.60 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=58.4
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~ 225 (560)
...++.+..+|+++++.++..|+..|-.+.+.. +.....+...+.+..|..+++... +.+++.++..+..-+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 445778889999999999999998888888764 445566777788999999988754 4489999888877765
No 265
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=72.06 E-value=26 Score=30.10 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=59.2
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChH-HHHHHhhCCCHHHHHHhhcC---CCHHHHHHHHHHHHHHhcC
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK-NVLAVMGRSNIAALVQLLTA---TSPRIREKTVTVICSLAES 226 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~-~~~~i~~~g~v~~Lv~lL~~---~~~~v~~~A~~~L~~La~~ 226 (560)
...++.+-.+|+++++.++..|+..|-.+.+.... ....+.....+..|+.++.. .++.++..++..+...+..
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44578888999999999999999988888876654 55556565778889999875 3589999999999887653
No 266
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.66 E-value=23 Score=30.99 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=60.7
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChH-HHHHHhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcC
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK-NVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAES 226 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~-~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~ 226 (560)
...++.+..+|+++++.++..|+..|-.+.+.... ....+...+.+..|.++++. .++.+++..+..+...+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 44578888999999999999999888888876553 45567777889999999987 6799999999999887753
No 267
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=71.54 E-value=1.1e+02 Score=33.61 Aligned_cols=157 Identities=11% Similarity=0.096 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHHhcCCchHHHHHh----CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHH
Q 008585 209 SPRIREKTVTVICSLAESGSCENWLVS----EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI 284 (560)
Q Consensus 209 ~~~v~~~A~~~L~~La~~~~~~~~l~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv 284 (560)
.++++--|+.+|..+..+...-..+.. ...+..++..+. .++..+..++++|.|+-.++-.+.-+... ...+.
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESIL 633 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHh
Confidence 467788888899888887653333332 235556666665 66778889999999998887666655432 22222
Q ss_pred HHh---cc-CChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhc----CCchhHHHHHHHHHHHHccCChhH
Q 008585 285 EIC---QT-GDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDC----GILLGSKEYAAECLQNLTASNENL 354 (560)
Q Consensus 285 ~ll---~~-~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~----~~~~~v~~~a~~~L~~La~~~~~~ 354 (560)
..+ ++ ++..++.+.+....|++. ...+-+ .+..+.+...+.. -++.+..+..+.+|++|+..++..
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 221 22 334555544444445542 111111 3444444444432 222245667788999999876554
Q ss_pred HHHHHhCCCHHHHHHhccC
Q 008585 355 RRSVVSEGGIRSLLAYLDG 373 (560)
Q Consensus 355 ~~~i~~~g~l~~L~~ll~~ 373 (560)
..+.+.-.++.+...+.+
T Consensus 710 -~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 710 -IQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred -HHHHHhcCHHHHHHHHHH
Confidence 345555556666666543
No 268
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=71.35 E-value=54 Score=36.12 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=89.4
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHh-hhcCCHHHHHHHHHHHHHhhCChhhHH
Q 008585 194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRL-VESGSTVGKEKATISLQRLSMSAEMAR 272 (560)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~La~~~~~~~ 272 (560)
.+..++.|..-+++.+..+|+.++..+..+++.-+ -..++.-++|.+-++ ++..+..++..++.|+..+.. ..+
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---~lD 461 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---RLD 461 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---HHH
Confidence 44567788888888899999999999999987655 334455567777665 455688899999999999972 211
Q ss_pred HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCC
Q 008585 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI 332 (560)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~ 332 (560)
...-..-+.++.+-.+..+|.+......+..++.........+.-..++|.++.+...+.
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 111112223444444567888888877777777643322233444567888887766554
No 269
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.31 E-value=1.8e+02 Score=32.76 Aligned_cols=202 Identities=16% Similarity=0.174 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc
Q 008585 210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT 289 (560)
Q Consensus 210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~ 289 (560)
..+.-.|...|...+..+.+...+...+++..+.+...-++...|. .-.++.+.+-+..+-+-+..
T Consensus 307 D~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~--------------eDeElFED~pleYiRRDlEG 372 (960)
T KOG1992|consen 307 DYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE--------------EDEELFEDNPLEYIRRDLEG 372 (960)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch--------------hhHHHhccCHHHHHHHhccc
Confidence 3445567777777777666666666666666665544333322222 12344555566666677777
Q ss_pred CChHHH-HHHHHHHHHhcCCchhHHHHHhcCcHHHHHHH-hh--cCCchhHHHHHHHHHHHHccCChhHHHHHHhCC---
Q 008585 290 GDSVSQ-AAAACTLKNISAVPEVRQMLAEEGIVSVMIKL-LD--CGILLGSKEYAAECLQNLTASNENLRRSVVSEG--- 362 (560)
Q Consensus 290 ~~~~~~-~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~l-L~--~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g--- 362 (560)
.|.+.| +.|+..++.|+.+-+.+..=+-.+-+..++.- .. +++. .-+..+......++......+.-+....
T Consensus 373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nW-k~kd~aiyL~talaik~~t~~~Gvtstn~lv 451 (960)
T KOG1992|consen 373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNW-KKKDRAIYLVTALAIKGQTAKHGVTSTNELV 451 (960)
T ss_pred CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccc-cccchhhhhhHHHHhhcchhhcceeeccccc
Confidence 677766 56677777777643322221112223333332 22 2232 3355556666666553222111111111
Q ss_pred -CH----HHHHHhccC------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 363 -GI----RSLLAYLDG------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 363 -~l----~~L~~ll~~------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
++ ..+..-|.+ |-.+..++..+..+=..-..+.+ ...++.+++.|+.++..|-..|+.++-.+-
T Consensus 452 dv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l--m~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 452 DVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL--MALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred cHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH--HHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 11 111111222 22334444443333222222222 235899999999999999999999999875
No 270
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=71.03 E-value=1.5e+02 Score=31.59 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=55.7
Q ss_pred CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc------CCHHHHHHHHHHHHHHhCCh--hHHHHHHhc--CCH
Q 008585 374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA------GSLGAQQAAASALCRVCTSA--EMKKLVGEA--GCT 443 (560)
Q Consensus 374 ~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~A~~aL~~La~~~--~~~~~i~~~--g~i 443 (560)
.+....+-.++.||+..... ...+..|...|.+ .+..+-+-|+..+..+.-.. +....+--. -.+
T Consensus 229 ~~l~~~~w~~m~nL~~S~~g-----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 229 VSLCKPSWRTMRNLLKSHLG-----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred cccchhHHHHHHHHHcCccH-----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 56677888888888873222 1247778888832 23566677888888766332 222221111 257
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 444 PLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 444 ~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
+.|...++.+++.+-......+.++.
T Consensus 304 ~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 304 PSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 77777777777766666666666665
No 271
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=70.89 E-value=39 Score=33.26 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=49.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchH--HHHHhCCCHHHHHHhhh------------cCCHHHHHHHHHHHH
Q 008585 197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCE--NWLVSEGVLPPLIRLVE------------SGSTVGKEKATISLQ 262 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~--~~l~~~g~i~~Lv~lL~------------~~~~~~~~~a~~~L~ 262 (560)
.+|+++.++++.++.++..++.+|..+...-... ..+.+.|..+.+-..+. +++..+...+-.+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 5899999999999999999999999998865422 24667776665555443 234456666667777
Q ss_pred Hh
Q 008585 263 RL 264 (560)
Q Consensus 263 ~L 264 (560)
.|
T Consensus 200 ~L 201 (282)
T PF10521_consen 200 SL 201 (282)
T ss_pred HH
Confidence 76
No 272
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.89 E-value=99 Score=29.47 Aligned_cols=136 Identities=22% Similarity=0.159 Sum_probs=84.5
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhC
Q 008585 158 ELLARL-QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSE 236 (560)
Q Consensus 158 ~Ll~~L-~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~ 236 (560)
.++..+ +..+++.+...++.|..++..+..+.. -.+..|..+.+.+..+.+..+.+.+..+...++..-
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----- 73 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----- 73 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence 344433 466788899999999999976521211 135666667777777777777788887776554211
Q ss_pred CCHHHHHHh-----h---hc--CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh-ccCChHHHHHHHHHHHHh
Q 008585 237 GVLPPLIRL-----V---ES--GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNI 305 (560)
Q Consensus 237 g~i~~Lv~l-----L---~~--~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nL 305 (560)
+.+..++.. . .+ ...+.....+.++..++...+.. ....++.+..+| ++.++..+..++.+|..+
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 223333332 1 11 13334444456777776653332 222357888888 788888999999999999
Q ss_pred cC
Q 008585 306 SA 307 (560)
Q Consensus 306 a~ 307 (560)
+.
T Consensus 150 c~ 151 (234)
T PF12530_consen 150 CE 151 (234)
T ss_pred HH
Confidence 84
No 273
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=69.48 E-value=2.9e+02 Score=34.77 Aligned_cols=135 Identities=10% Similarity=0.080 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCC----chHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChH
Q 008585 207 ATSPRIREKTVTVICSLAESG----SCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVR 281 (560)
Q Consensus 207 ~~~~~v~~~A~~~L~~La~~~----~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~ 281 (560)
+++..+...|+..|..++..- +.-..=.+...+.++..++.. .+.++++....|+.+|..... ..+ .. |.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI-kS-GWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV-KS-GWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh-hc-CcH
Confidence 445678888888888887632 211112234567888887764 477899999999999854321 122 22 556
Q ss_pred HHHHHhc----cCChHHHHHHHHHHHHhcCCc-h-h----HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585 282 PLIEICQ----TGDSVSQAAAACTLKNISAVP-E-V----RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL 347 (560)
Q Consensus 282 ~Lv~ll~----~~~~~~~~~a~~aL~nLa~~~-~-~----~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L 347 (560)
.++.++. +.++.+...|..++..+..+- . . ...+ ..+|.++.++.....+.++-..|+..|+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 6666665 356778888888887765310 0 0 1122 235667777765543335666777777766
No 274
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.28 E-value=59 Score=35.70 Aligned_cols=136 Identities=14% Similarity=0.096 Sum_probs=89.0
Q ss_pred HHHHHHhcc----CChHHHHHHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhh-cCCchhHHHHHHHHHHHHccCChhH
Q 008585 281 RPLIEICQT----GDSVSQAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENL 354 (560)
Q Consensus 281 ~~Lv~ll~~----~~~~~~~~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~-~~~~~~v~~~a~~~L~~La~~~~~~ 354 (560)
|...+.|.+ .++.++..|.-+|..+- -..+.|. .-+|.++..++ ++++ .+|.++.-.|+.++-.....
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P-~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIP-RIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCc-ceeccceeeccccceehhhh
Confidence 444556654 67888888888887763 3334332 24788888887 4554 78988888888776533222
Q ss_pred HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585 355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 355 ~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~ 430 (560)
.+.. -..|.+-+.+ .+++..|+..+.++.... .+.-.|-++.+...|.+++.++...|-..+..++..
T Consensus 969 ~de~-----t~yLyrrL~De~~~V~rtclmti~fLilag---q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 969 ADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAG---QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred hHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHcc---ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 1111 2234444433 567888888888876521 122357788888888888888888888888888753
No 275
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=69.10 E-value=19 Score=31.00 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=57.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKP--NSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~--~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|.++++.++..|+..|-.+..+ ..++..+...+++..|++++.... +.|+..++..+..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 466777888899999999999999999855 778889988999999999997543 238888888887775
No 276
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=67.92 E-value=44 Score=28.72 Aligned_cols=126 Identities=13% Similarity=0.167 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC---C-------ch----hHHHHH
Q 008585 252 VGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA---V-------PE----VRQMLA 316 (560)
Q Consensus 252 ~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~---~-------~~----~~~~i~ 316 (560)
.++.+.+.++..++..+ +..| ...++.++..++. ++......+..|..+.. + .+ .+..+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 45667777777776532 2211 2234777777766 46656666666666542 1 01 112222
Q ss_pred h--cCcHHHHHHHhhcCCc---hhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHH
Q 008585 317 E--EGIVSVMIKLLDCGIL---LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGAL 384 (560)
Q Consensus 317 e--~g~v~~L~~lL~~~~~---~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L 384 (560)
+ ..++..+.+.+..... .++...++.++.....--+ -..+.+.+.++.+++++.++..++.|+.+|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 2 2344555555554332 3678888999888877333 345667778889999998888888888775
No 277
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=67.71 E-value=25 Score=38.39 Aligned_cols=185 Identities=12% Similarity=0.052 Sum_probs=96.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
.++-+++...+.+..+|..=+..+-++...-. ..+++...++.+...+.+.++.+|++++..+..|+.-=..+ ..
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~L 405 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NL 405 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hh
Confidence 34445555555555555554444444432211 23445556666666666777777777777776666433222 12
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHH
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~ 314 (560)
+...+..+.++-.++...+|.+...||.+++....... .+.-.+.+..+-++++-+..|..+..+++......+. .
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~--~ 481 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ--S 481 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch--h
Confidence 22234444444344455666666667776655421111 1111223344445555556677777777665542211 1
Q ss_pred HHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 315 i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
=+...++|.++.+.-+.+. .++..+-.++...-.
T Consensus 482 ~va~kIlp~l~pl~vd~e~-~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 482 EVANKILPSLVPLTVDPEK-TVRDTAEKAIRQFLE 515 (690)
T ss_pred hhhhhccccccccccCccc-chhhHHHHHHHHHHh
Confidence 1223467777777777665 677777666655443
No 278
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=65.85 E-value=1.7e+02 Score=30.18 Aligned_cols=125 Identities=21% Similarity=0.246 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh----c--CCchhHHHHHHHHHHHHccCChhHH------------
Q 008585 294 SQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD----C--GILLGSKEYAAECLQNLTASNENLR------------ 355 (560)
Q Consensus 294 ~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~----~--~~~~~v~~~a~~~L~~La~~~~~~~------------ 355 (560)
-|.+|+..|..|+.. ..+.+.+ -....+-.++. + .+. .-+..|+..++.|+......+
T Consensus 227 rR~AA~dfl~~L~~~--~~~~v~~-i~~~~i~~~l~~y~~~~~~~w-~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 227 RRRAACDFLRSLCKK--FEKQVTS-ILMQYIQQLLQQYASNPSNNW-RSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHH-TTT-H-HHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cHHHHHHHHHHHHHH--HhHHHHH-HHHHHHHHHHHHHhhCCcccH-HHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 456778888888742 1111111 11122223332 2 233 578889999999987442211
Q ss_pred HHHHhCCCHHHHHHhcc-CCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 008585 356 RSVVSEGGIRSLLAYLD-GPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL 424 (560)
Q Consensus 356 ~~i~~~g~l~~L~~ll~-~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL 424 (560)
..++..-+++.|..-.. .|-++..|++.+..+-..-..+.+ .++++.++..|.+++..|...|+.++
T Consensus 303 ~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 12222222333321001 144677888888887763222222 34799999999999999999998875
No 279
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.75 E-value=80 Score=34.75 Aligned_cols=169 Identities=11% Similarity=0.108 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHH
Q 008585 335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVL 409 (560)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL 409 (560)
.++..|.-+|..+..-+-+.. ..-+|.++..++. |.+|.+|+-.++-++. +...+ ..-..|.+-|
T Consensus 911 ~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLyrrL 980 (1128)
T COG5098 911 ELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLYRRL 980 (1128)
T ss_pred HHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHHHHh
Confidence 677777777766654222222 2237888888863 6678888888887765 22221 1245667777
Q ss_pred hcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHH
Q 008585 410 KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLV 489 (560)
Q Consensus 410 ~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv 489 (560)
.+.+..||+.+..++.+|--.. .+.-.|-.+.+..++..++.++.+.|-..+..++..+...- .+.-.+.
T Consensus 981 ~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~y------n~fidif 1050 (1128)
T COG5098 981 GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMY------NGFIDIF 1050 (1128)
T ss_pred cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchh------hhhHHHH
Confidence 7888999999999999975221 11224778889999999999999999999999874322111 1112233
Q ss_pred hccCCC--CchhhHHHHHHHHHHhCCChhhHHHHHH
Q 008585 490 QLLDPS--PQNTAKKYAVACLASLSPSKKCKKLMIS 523 (560)
Q Consensus 490 ~lL~~~--~~~~~~~~a~~~L~~L~~~~~~r~~i~~ 523 (560)
.-|.+. +....-+..+..|..+...+..++++.+
T Consensus 1051 s~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E 1086 (1128)
T COG5098 1051 STLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKE 1086 (1128)
T ss_pred HHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 1112234566666666554445555443
No 280
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=65.14 E-value=42 Score=29.16 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=57.9
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTA------TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~------~~~~v~~~A~~~L~~La~ 225 (560)
+..++.+..+|+++++.++..|+..|-.+.+.. +.....+...+.+..|+++++. .++.++...+..+..-+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 345778889999999999999998888887754 4455677777889999999963 458999999888877664
No 281
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=62.96 E-value=16 Score=31.67 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=56.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccC-CHH---HHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAK-PNS---VREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~-~~~---v~~~A~~aL~~L~ 469 (560)
++..|.+-|.++++.++..|+..|-.+..+ +.++..+....++..|.+++.+. ... |+..+...+...+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 467788888899999999999999998854 78888888888999999988743 333 8888888887775
No 282
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=62.92 E-value=2.6e+02 Score=31.35 Aligned_cols=313 Identities=16% Similarity=0.130 Sum_probs=155.6
Q ss_pred hhchHHHHHHHH-c-------cCCHHHHHHHHHHHHHHHh--hChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 008585 152 THGNTRELLARL-Q-------IGHLEAKHKALDSLVEAMK--EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVIC 221 (560)
Q Consensus 152 ~~~~i~~Ll~~L-~-------~~~~~~~~~A~~~L~~L~~--~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~ 221 (560)
....+.-+.+.| + ..++-....|+..+.++.. ..+.....+.+.=.++.++..++++..-.+.+|+..+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 344555556666 2 1233445556666655543 22222223333334666777778887888999999999
Q ss_pred HHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhC--CChHHHHHHhccCChHHHHHHH
Q 008585 222 SLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH--GGVRPLIEICQTGDSVSQAAAA 299 (560)
Q Consensus 222 ~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~--g~i~~Lv~ll~~~~~~~~~~a~ 299 (560)
.+..+ .+...+-..+.....+.+++.+-.++..|+-++.-+-.+.+....+.+| +.++.|+.+-+.-+.+....++
T Consensus 486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 99443 3333333345677778888888889999999999887776665555543 4455566555554555544444
Q ss_pred HHHHHhcCCchhHHHHHh--cCcHH----HHHHHhhcCCc-----hhHHHHHHHHHHHHcc--CChhHHHHHHh--CCCH
Q 008585 300 CTLKNISAVPEVRQMLAE--EGIVS----VMIKLLDCGIL-----LGSKEYAAECLQNLTA--SNENLRRSVVS--EGGI 364 (560)
Q Consensus 300 ~aL~nLa~~~~~~~~i~e--~g~v~----~L~~lL~~~~~-----~~v~~~a~~~L~~La~--~~~~~~~~i~~--~g~l 364 (560)
..+..--. ++....-.+ ...+. ....+++++++ .+-+..|.+.|..+.+ -+=+++..+.+ .-.+
T Consensus 564 e~fVe~fs-eELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 564 ESFVEYFS-EELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHhH-HhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 44432111 011111111 11233 33333333211 1345556666665543 00011111111 0012
Q ss_pred HHHHHh-ccC--CccHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhCChhHHHHHH
Q 008585 365 RSLLAY-LDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGS-LGAQQAAASALCRVCTSAEMKKLVG 438 (560)
Q Consensus 365 ~~L~~l-l~~--~~~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~~~~~~~~i~ 438 (560)
-+.+.+ +++ .+.-..|+..+-+.... .+.+ +.-|+.+.+.+++.... ..--+.++-++.|+... .+..+.
T Consensus 643 ypvi~Filkn~i~dfy~Ea~dildg~tf~--skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfity--G~~ef~ 718 (970)
T COG5656 643 YPVISFILKNEISDFYQEALDILDGYTFM--SKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITY--GKTEFM 718 (970)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhHH--HHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHh--Cccccc
Confidence 222222 222 34455666666666541 0111 11233444444444444 35567788888888632 111222
Q ss_pred hcC-----CHHHHHHHHccCCH--HHHHHHHHHHHHhcCC
Q 008585 439 EAG-----CTPLLIKLLEAKPN--SVREVAAQAISSLVTL 471 (560)
Q Consensus 439 ~~g-----~i~~Lv~ll~s~~~--~v~~~A~~aL~~L~~~ 471 (560)
+.| +...+...+.+.+. +=...++..+-.++.+
T Consensus 719 ~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 719 DAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred cccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHH
Confidence 222 23333334444444 3356677777777643
No 283
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.77 E-value=1.5e+02 Score=32.87 Aligned_cols=175 Identities=11% Similarity=0.143 Sum_probs=100.6
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHcc-CChhH----HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc---cc
Q 008585 322 SVMIKLLDCGILLGSKEYAAECLQNLTA-SNENL----RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG---SV 391 (560)
Q Consensus 322 ~~L~~lL~~~~~~~v~~~a~~~L~~La~-~~~~~----~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~---~~ 391 (560)
|++..-|+-.+. .||.+|+..+-++-- .+++. ...+++ .-...+..+|.+ |.+|..|+.-+..... ..
T Consensus 177 p~l~R~L~a~Ns-~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARNS-EVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCch-hhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 445555555666 799999999888764 11221 122221 114456666766 6677655544444332 11
Q ss_pred cHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585 392 SQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (560)
Q Consensus 392 ~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~ 470 (560)
.+..++ ..++..+.+-+.. ...+|+......|..+..+|.....+ .-++|.|-..+..+...||..+...|..+=
T Consensus 255 iP~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~ik- 330 (1005)
T KOG1949|consen 255 IPPTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKIK- 330 (1005)
T ss_pred cCHHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH--HHHHHhcchhhhccchhHHHHHHHHHHHHH-
Confidence 111111 1234444444433 44688888888888888776665555 234778888888899999999999888883
Q ss_pred CChhhHHHhhhCCChHHHHhccCCCCchhhHHHH
Q 008585 471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYA 504 (560)
Q Consensus 471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a 504 (560)
.-+...+.+--....++.-|+....+..+..+
T Consensus 331 --~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~ 362 (1005)
T KOG1949|consen 331 --AVRAAKFWKICPMDHILVRLETDSRPVSRRLV 362 (1005)
T ss_pred --hhhhhhhhccccHHHHHHHHhccccHHHHHHH
Confidence 22222222223446666666665444444333
No 284
>PRK09169 hypothetical protein; Validated
Probab=62.37 E-value=4.4e+02 Score=33.79 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCch-hHHHHHHHH
Q 008585 500 AKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIP-GARKLLERL 548 (560)
Q Consensus 500 ~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~-~akkl~~~l 548 (560)
.+..+..+...++..+..+..|...+.--.|-.|.+.... ...+.++.|
T Consensus 517 c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aL 566 (2316)
T PRK09169 517 CRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEAL 566 (2316)
T ss_pred HHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 3444444555677777777777666666666666665443 334444433
No 285
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.74 E-value=38 Score=29.37 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=57.7
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCCC--HH--HHHHHHHHHHHHhcC
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATS--PR--IREKTVTVICSLAES 226 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~--~~--v~~~A~~~L~~La~~ 226 (560)
...++.+-.+|+.+++.++..|+..|-.+.+.. +.....+.....+..|..+++... +. +++.++..+...+..
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 445778889999999999999998888888776 455566666678889999887543 33 899999888877653
No 286
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.33 E-value=1.3e+02 Score=32.31 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=88.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC--------CHHHHHHHHHHHHHhhCChh
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--------STVGKEKATISLQRLSMSAE 269 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--------~~~~~~~a~~~L~~La~~~~ 269 (560)
...+.+.+..+++..+..|+..| ..++.... .+|.++.++..+ +.....+....++.|..|+.
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL---~TDsGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSL---ETDSGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---ccCccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 34445555556666666665444 33332111 356666666543 55666778888888888877
Q ss_pred hHHHHHhCCChHHHHHHhcc----------CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcC-CchhHHH
Q 008585 270 MARAIVGHGGVRPLIEICQT----------GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG-ILLGSKE 338 (560)
Q Consensus 270 ~~~~l~~~g~i~~Lv~ll~~----------~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~-~~~~v~~ 338 (560)
..-.-.-+..+|.++..+-+ ..+.+|..|+..+..++.+-...-.-....+...+.+.+.+. .+....+
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 66555556667887776632 346789999999988875322211113445677777777654 3446677
Q ss_pred HHHHHHHHHcc
Q 008585 339 YAAECLQNLTA 349 (560)
Q Consensus 339 ~a~~~L~~La~ 349 (560)
-++..|..|..
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 77777777754
No 287
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=59.54 E-value=1.4e+02 Score=27.25 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=83.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh-HHHHH
Q 008585 197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARAIV 275 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~-~~~l~ 275 (560)
.++.++++.-+++..++..|+.++..+....=.-. ...+|.++.+..++++.++..|...+..+....+. ...-.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667777888889999999999987765431000 12689999999999999999999999999664332 22111
Q ss_pred hCCChHHHHHHhcc--CChH--H---HHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCC-------chhHHHHH
Q 008585 276 GHGGVRPLIEICQT--GDSV--S---QAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGI-------LLGSKEYA 340 (560)
Q Consensus 276 ~~g~i~~Lv~ll~~--~~~~--~---~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~-------~~~v~~~a 340 (560)
..|+..-..+.+. ++.. . ......-|+.+.. +...|+.+ +..+++.++... ...-....
T Consensus 85 -~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 85 -SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred -HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHHH
Confidence 1234444443332 1111 1 3445555555554 34556555 455555554322 11223444
Q ss_pred HHHHHHHcc
Q 008585 341 AECLQNLTA 349 (560)
Q Consensus 341 ~~~L~~La~ 349 (560)
+.+..||+.
T Consensus 159 ~Fla~nLA~ 167 (187)
T PF12830_consen 159 LFLAENLAT 167 (187)
T ss_pred HHHHHHHhc
Confidence 555555554
No 288
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.12 E-value=1.9e+02 Score=28.07 Aligned_cols=175 Identities=14% Similarity=0.123 Sum_probs=99.9
Q ss_pred CChHHHHHHhcc--CChHHHHHHHHHHHHhcCCc--------hhHHHHHhcCcHHHHHHHhhcCCc---hhHHHHHHHHH
Q 008585 278 GGVRPLIEICQT--GDSVSQAAAACTLKNISAVP--------EVRQMLAEEGIVSVMIKLLDCGIL---LGSKEYAAECL 344 (560)
Q Consensus 278 g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~--------~~~~~i~e~g~v~~L~~lL~~~~~---~~v~~~a~~~L 344 (560)
|..+.+..++-. .++.....+...|..++..+ +.+-.+.=...+|.++.-++++.+ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 344444444322 23445556677777775422 123223224456666666666661 13445666777
Q ss_pred HHHccCChhHHHHHHhCCCHHHHHHhccC------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHH
Q 008585 345 QNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQ 418 (560)
Q Consensus 345 ~~La~~~~~~~~~i~~~g~l~~L~~ll~~------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~ 418 (560)
..+|.... .+.+..++..... .+....++..|+.-..+.. +...+..|+.+|.++.+.+|.
T Consensus 140 a~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~-----~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH-----EFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHhCCcHHHHH
Confidence 77774221 1224444444322 1223344444444332221 234577889999999999999
Q ss_pred HHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 419 AAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 419 ~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.+...|..+-...+.++. .....+.++.++++++.. ..|.++|-...
T Consensus 207 ~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccH---HHHHHHHHHHH
Confidence 999999999877555554 344589999999986643 45555555443
No 289
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=49.35 E-value=91 Score=31.72 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=80.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC-------CHHHHHHHHHHHHHhhCChhhHHH
Q 008585 201 LVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQRLSMSAEMARA 273 (560)
Q Consensus 201 Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~~~~~~~ 273 (560)
+.+.+..++...+..| |..|..++... ..+|.+++++.++ +..........+..|..|+...-.
T Consensus 183 It~a~~~~~~~~r~~a---L~sL~tD~gl~------~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le 253 (343)
T cd08050 183 ITEALVGSNEEKRREA---LQSLRTDPGLQ------QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLE 253 (343)
T ss_pred HHHHHhCCCHHHHHHH---HHHhccCCCch------hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchH
Confidence 3333433444444443 34455554321 2567777776653 466667778888888888776555
Q ss_pred HHhCCChHHHHHHhcc----------CChHHHHHHHHHHHHhcC-----CchhHHHHHhcCcHHHHHHHhhcCC-chhHH
Q 008585 274 IVGHGGVRPLIEICQT----------GDSVSQAAAACTLKNISA-----VPEVRQMLAEEGIVSVMIKLLDCGI-LLGSK 337 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~----------~~~~~~~~a~~aL~nLa~-----~~~~~~~i~e~g~v~~L~~lL~~~~-~~~v~ 337 (560)
..-+-.++.++..+-. ..+.+|..|+..|..++. ++..+..+ +..+.+.+.++. .....
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri-----~~tl~k~l~d~~~~~~~~ 328 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRI-----TRTLLKALLDPKKPLTTH 328 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH-----HHHHHHHHcCCCCCcchh
Confidence 5555577888877621 245889999999999874 22333333 445666555433 22446
Q ss_pred HHHHHHHHHHc
Q 008585 338 EYAAECLQNLT 348 (560)
Q Consensus 338 ~~a~~~L~~La 348 (560)
+-|+..|..+.
T Consensus 329 YGAi~GL~~lG 339 (343)
T cd08050 329 YGAIVGLSALG 339 (343)
T ss_pred hHHHHHHHHhC
Confidence 77777777664
No 290
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=49.03 E-value=2e+02 Score=30.14 Aligned_cols=248 Identities=14% Similarity=0.163 Sum_probs=115.9
Q ss_pred HHHHHHHHhcCCch--HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhcc-CC
Q 008585 216 TVTVICSLAESGSC--ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQT-GD 291 (560)
Q Consensus 216 A~~~L~~La~~~~~--~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~-~~ 291 (560)
.-..|..+..+.+. ....+....+..|+.++.+.|+.-|.....+|.++-.. .+.+..+ .......+.+.... ..
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I-r~~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI-RKSINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH-HHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCccc
Confidence 33445555444331 22344555788899999999999999999999987442 2222222 22222333333332 23
Q ss_pred hHHHHHHHHHHHHhcCC-c-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHH
Q 008585 292 SVSQAAAACTLKNISAV-P-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA 369 (560)
Q Consensus 292 ~~~~~~a~~aL~nLa~~-~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ 369 (560)
+......+..++.+-.+ . ..++.... =....++.|.....-..-...-..++..+...++.....+ +..+++
T Consensus 189 ~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk 262 (409)
T PF01603_consen 189 HNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLK 262 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHH
Confidence 33344444555544321 0 11111100 0123344444443321223344445555555455443322 333333
Q ss_pred hccCCc--cHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhc--CCH
Q 008585 370 YLDGPL--PQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEA--GCT 443 (560)
Q Consensus 370 ll~~~~--~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~--g~i 443 (560)
..-... -+..-+.-+..+...-....+ +...+...+...+.+.+..|.+.|+....| +.....+.+. ..+
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n----~~~~~li~~~~~~i~ 338 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN----EYFLSLISQNSRVIL 338 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS----HHHHHHHHCTHHHHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC----HHHHHHHHhChHHHH
Confidence 332111 122233333333331111111 122345566667777888887777654333 3222222111 245
Q ss_pred HHHHHHHc-----cCCHHHHHHHHHHHHHhcCCChh
Q 008585 444 PLLIKLLE-----AKPNSVREVAAQAISSLVTLPQN 474 (560)
Q Consensus 444 ~~Lv~ll~-----s~~~~v~~~A~~aL~~L~~~~~~ 474 (560)
|.+..-+. ..+..+|..|..++..|...++.
T Consensus 339 p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 339 PIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPK 374 (409)
T ss_dssp HHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHH
Confidence 66666553 34677999999999999754443
No 291
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=46.80 E-value=24 Score=28.97 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHH
Q 008585 213 REKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGK 254 (560)
Q Consensus 213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~ 254 (560)
....+..+..|+..++.-..+++.|+++.|+.+|..+|.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 456778889999999988889999999999999998877653
No 292
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=46.44 E-value=1.3e+02 Score=29.56 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=45.9
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh-hH-HHHHhCCChHHHHHHh----c--------cCChHHHHHHHHHHH
Q 008585 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MA-RAIVGHGGVRPLIEIC----Q--------TGDSVSQAAAACTLK 303 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~-~~l~~~g~i~~Lv~ll----~--------~~~~~~~~~a~~aL~ 303 (560)
++|+++.++.+.++..+..++.+|..+..+.+ .. ..+.+.|..+.+-+.+ . .++..+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999976432 22 2355566555444333 2 233445556666666
Q ss_pred Hh
Q 008585 304 NI 305 (560)
Q Consensus 304 nL 305 (560)
.|
T Consensus 200 ~L 201 (282)
T PF10521_consen 200 SL 201 (282)
T ss_pred HH
Confidence 66
No 293
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=45.19 E-value=30 Score=30.29 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=17.0
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585 280 VRPLIEICQTGDSVSQAAAACTLKNIS 306 (560)
Q Consensus 280 i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (560)
|.+|+++|.+.++.+...|+.+|.+.-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 577888887777777778888877654
No 294
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.03 E-value=1e+02 Score=25.44 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=51.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHc------cCCHHHHHHHHHHHHHh
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE------AKPNSVREVAAQAISSL 468 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~------s~~~~v~~~A~~aL~~L 468 (560)
++..|..-|.+.++.++..|+..|-.+..+ +.+...+....++..++++.. ..+..+|..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 566777777888999999999999999854 778888877777777765421 23567888888877654
No 295
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=44.72 E-value=98 Score=31.26 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHhCC--CHHHHHHhhhcC---CHHHHHHHHHHHHHhhCChhhHHHHH-------hCC
Q 008585 211 RIREKTVTVICSLAESGSCENWLVSEG--VLPPLIRLVESG---STVGKEKATISLQRLSMSAEMARAIV-------GHG 278 (560)
Q Consensus 211 ~v~~~A~~~L~~La~~~~~~~~l~~~g--~i~~Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~~~~l~-------~~g 278 (560)
.+|-.|+.++..+..++..-..+...+ .+..|+++++.+ +..++..|..+|..++.+......+. .||
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 456667777776666666667777766 999999999876 67789999999999988654333333 267
Q ss_pred ChHHHHHHh
Q 008585 279 GVRPLIEIC 287 (560)
Q Consensus 279 ~i~~Lv~ll 287 (560)
.+..+++-+
T Consensus 317 iL~~llR~~ 325 (329)
T PF06012_consen 317 ILPQLLRKC 325 (329)
T ss_pred cHHHHHHHH
Confidence 777666543
No 296
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=44.15 E-value=73 Score=26.96 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=50.2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhc-CCHHHHHHHHccC--------CHHHHHHHHHHHHHh
Q 008585 400 GFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEA-GCTPLLIKLLEAK--------PNSVREVAAQAISSL 468 (560)
Q Consensus 400 ~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~-g~i~~Lv~ll~s~--------~~~v~~~A~~aL~~L 468 (560)
.+++.|.+-|+..++.|+..++.+|-.++.. ++++..+... ..|..+.++-... +..||..|.+++..|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 3577788888888899999999999999854 6777766554 3455544444322 234888998888877
Q ss_pred cC
Q 008585 469 VT 470 (560)
Q Consensus 469 ~~ 470 (560)
..
T Consensus 118 f~ 119 (122)
T cd03572 118 FS 119 (122)
T ss_pred hc
Confidence 53
No 297
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=41.83 E-value=7.7e+02 Score=32.19 Aligned_cols=258 Identities=19% Similarity=0.143 Sum_probs=127.4
Q ss_pred cCCHHHHHHHHHHHHHHHhhChHHHH----HH-hhCCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCC
Q 008585 165 IGHLEAKHKALDSLVEAMKEDEKNVL----AV-MGRSNIAALVQL-LTATSPRIREKTVTVICSLAESGSCENWLVSEGV 238 (560)
Q Consensus 165 ~~~~~~~~~A~~~L~~L~~~~~~~~~----~i-~~~g~v~~Lv~l-L~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~ 238 (560)
..+.+.+..+...+..+....+.... .+ .-...+..+..+ +..+++.++......+. ......+.+.+.
T Consensus 492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~laQ~~~ 566 (2341)
T KOG0891|consen 492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQLAQPDL 566 (2341)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhhhhcCchh
Confidence 44556666666666666544332000 00 000122222222 12334555554443333 222334555566
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHH
Q 008585 239 LPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLA 316 (560)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~ 316 (560)
+..+...+.++.-..+..+...+++++.. +...-......-+..+-.+-.++-..+...++.-+..+-. .+......+
T Consensus 567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v 646 (2341)
T KOG0891|consen 567 LRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV 646 (2341)
T ss_pred HHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc
Confidence 66777788888888888888889988763 3221111111111111111111222222222222222111 111111122
Q ss_pred hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhccccH
Q 008585 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQ 393 (560)
Q Consensus 317 e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~~~~~ 393 (560)
...+..++..+.+++. .+...+..++..|+......-...++ ..++.+.+.+.+ ..-+..+.+++.++....+-
T Consensus 647 -~~~l~~~~~~~~~~~s-~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~ 723 (2341)
T KOG0891|consen 647 -GPILLVLLPKLQDPSS-GVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGY 723 (2341)
T ss_pred -CchHHHHHHHHhccch-hhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccce
Confidence 2345666777777776 78888899999998754311111112 234444444432 45678899999999872111
Q ss_pred ---HHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhCC
Q 008585 394 ---EVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTS 430 (560)
Q Consensus 394 ---~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~La~~ 430 (560)
......-++..++..+..+ ...++..+...++++...
T Consensus 724 ~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 724 VVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred EecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 1111233466666666654 467778888888876644
No 298
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=41.42 E-value=6.3e+02 Score=30.40 Aligned_cols=234 Identities=16% Similarity=0.114 Sum_probs=126.0
Q ss_pred hhhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHH-HHhhCCCHHHHHHhh--c-CC-------CHHHHHHHH
Q 008585 149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVL-AVMGRSNIAALVQLL--T-AT-------SPRIREKTV 217 (560)
Q Consensus 149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~-~i~~~g~v~~Lv~lL--~-~~-------~~~v~~~A~ 217 (560)
.-+....+++|+..+-+...+.|.-+.-.+.++.+...+... ...+ ...-.++..+ . -+ ...+++.++
T Consensus 72 ~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~le-d~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 72 QWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLE-DLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred cccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHH-HHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 444677889999999899999999999999998865432211 1111 1111222211 1 11 146788888
Q ss_pred HHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh-hCChhhHHHHHhCCChHHHHHHhccCChHHHH
Q 008585 218 TVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQA 296 (560)
Q Consensus 218 ~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-a~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~ 296 (560)
++|..+..+-.... + ...+..+.+++...+..++.-.+..+... +.-.+.-. ..-..+++..++-+.+.+..++.
T Consensus 151 q~L~~~l~~~~~s~-~--~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L~ds~ddv~~ 226 (1549)
T KOG0392|consen 151 QALGAYLKHMDESL-I--KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGLEDSDDDVRS 226 (1549)
T ss_pred HHHHHHHHhhhhHh-h--HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhcchHHHH
Confidence 88888876543111 0 11356666677666555554443333332 10000000 11123456666777788889999
Q ss_pred HHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCch-hHHHHHHHHHHHHccCChhH--HHHH-HhCCCHHHHHHh
Q 008585 297 AAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILL-GSKEYAAECLQNLTASNENL--RRSV-VSEGGIRSLLAY 370 (560)
Q Consensus 297 ~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~-~v~~~a~~~L~~La~~~~~~--~~~i-~~~g~l~~L~~l 370 (560)
.|+..+...+..- -..+.+ ...+..+...+...++. .-.......+..++..++.. -... .+.|.++.+...
T Consensus 227 ~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~ 304 (1549)
T KOG0392|consen 227 VAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPF 304 (1549)
T ss_pred HHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHH
Confidence 8888887776432 111111 23444444444433221 12223333444555443211 1111 124777778888
Q ss_pred ccC--CccHHHHHHHHHHhhc
Q 008585 371 LDG--PLPQESAVGALRNLVG 389 (560)
Q Consensus 371 l~~--~~~~~~a~~~L~nla~ 389 (560)
+.+ ..++..++..+..|..
T Consensus 305 l~~~i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 305 LRHTISSVRRAALETLAMLLE 325 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 776 5677788888888876
No 299
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=41.28 E-value=1.4e+02 Score=25.92 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=54.2
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHH-HHHHHcc---CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKA-GSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPL-LIKLLEA---KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~-Lv~ll~s---~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|.+ .++.++..|+..|-.+..+ ..+...+...+++.. |++++.. .+..|+...+..+...+
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 35566666664 5899999999998888854 788888888899997 9999963 23578888888888876
No 300
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=40.74 E-value=2.5e+02 Score=25.69 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=61.1
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCC-------------------HHHHHHhccC---CccHHHHH
Q 008585 324 MIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGG-------------------IRSLLAYLDG---PLPQESAV 381 (560)
Q Consensus 324 L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~-------------------l~~L~~ll~~---~~~~~~a~ 381 (560)
+--++.|++. .+|..|+.+|..|-.+....-...-+..+ -..|+..++. +......+
T Consensus 45 lt~il~Dp~~-kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 45 LTCILKDPSP-KVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hHHHHcCCch-hHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3334555554 78888888888887754332222221111 2223334433 44566788
Q ss_pred HHHHHhhc-cccHHHHHhCCc----HHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585 382 GALRNLVG-SVSQEVLISLGF----FPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 382 ~~L~nla~-~~~~~~l~~~~~----i~~Lv~lL~~~~~~v~~~A~~aL~~La~~ 430 (560)
+++..+.. .... .+ ..|+ +..+..++.+.|++++..+..+++.+...
T Consensus 124 K~la~Lv~~tPY~-rL-~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 124 KCLAVLVQATPYH-RL-PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHccCChh-hc-CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 88888877 2221 11 2344 44455566778999999999999887643
No 301
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=40.36 E-value=3.5e+02 Score=26.32 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=21.6
Q ss_pred HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350 (560)
Q Consensus 313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~ 350 (560)
..+.+.|+...|+.+..+.+........++++..|..+
T Consensus 172 ~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 172 WALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 33455777777777777653223333555555555543
No 302
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.12 E-value=2.1e+02 Score=24.24 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=46.8
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHH-HHHHhhC-CCHHHHHHhhcCCC--------HHHHHHHHHHHHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKN-VLAVMGR-SNIAALVQLLTATS--------PRIREKTVTVICS 222 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~-~~~i~~~-g~v~~Lv~lL~~~~--------~~v~~~A~~~L~~ 222 (560)
......|..+|+..++.++.+++..|..++...+.. +..+... ..|..+.++=-.++ ..||+.|-.++..
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 445677889999999999999999999999765543 3333322 33555554432111 4567777666655
Q ss_pred Hh
Q 008585 223 LA 224 (560)
Q Consensus 223 La 224 (560)
|-
T Consensus 117 if 118 (122)
T cd03572 117 IF 118 (122)
T ss_pred Hh
Confidence 53
No 303
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=39.91 E-value=6e+02 Score=28.74 Aligned_cols=134 Identities=15% Similarity=0.171 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhc-cccHHH-HHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCC
Q 008585 377 QESAVGALRNLVG-SVSQEV-LISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP 454 (560)
Q Consensus 377 ~~~a~~~L~nla~-~~~~~~-l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~ 454 (560)
....++++..+.. .-.... +.....+-.|...++-..+.....++..++.+|.-.+
T Consensus 209 ~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~e---------------------- 266 (1102)
T KOG1924|consen 209 LQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGE---------------------- 266 (1102)
T ss_pred HHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeeh----------------------
Confidence 4455566655554 111111 1223346666777777777788888888888774321
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh-------hhHHHHHHcChh
Q 008585 455 NSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK-------KCKKLMISYGAI 527 (560)
Q Consensus 455 ~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~r~~i~~~g~i 527 (560)
....+...++|..++... .... ...++.-|+..+.....-.+...+..|..++ ..|..+...|.-
T Consensus 267 e~~~ekvl~aiT~~ae~~-~veR-------F~piv~gl~~~e~~~l~vacmq~INal~t~p~dldfRlhlR~E~mr~gL~ 338 (1102)
T KOG1924|consen 267 ENGLEKVLEAITTIAEAK-PVER-------FRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDFRLHLRSEFMRDGLH 338 (1102)
T ss_pred hhHHHHHHHHHHHHHhhc-chhh-------hhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHhHH
Confidence 334445555666665331 1111 2445555555432122223334455666554 267778888999
Q ss_pred HHHHHhhccCchh
Q 008585 528 GYLKKLSEMDIPG 540 (560)
Q Consensus 528 ~~L~~L~~~~~~~ 540 (560)
.+|.++.+.++.+
T Consensus 339 ~~l~~l~~i~n~~ 351 (1102)
T KOG1924|consen 339 KYLPDLTEINNDI 351 (1102)
T ss_pred HHHHHhhhhccHH
Confidence 9999998887654
No 304
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=39.60 E-value=1.7e+02 Score=25.71 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=29.7
Q ss_pred ChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHHHHHHHH
Q 008585 484 SVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLERL 548 (560)
Q Consensus 484 ~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l 548 (560)
.+..|+.+|.+.+. .+...+..+|.+. +.-.+....+..+.+. +.-||++++.=
T Consensus 95 NV~~LI~~L~~~d~-~lA~~Aa~aLk~T---------lLvyDaf~dv~~~ak~-N~~Ak~VleSW 148 (154)
T PF11791_consen 95 NVQPLIDLLKSDDE-ELAEEAAEALKNT---------LLVYDAFNDVAELAKA-NAYAKEVLESW 148 (154)
T ss_dssp THHHHHHGG--G-T-TTHHHHHHHHHT-----------TTCCHHHHHHHHHHT--HHHHHHHHHH
T ss_pred cHHHHHHHHcCCcH-HHHHHHHHHHHhh---------HHHHhhHHHHHHHHHc-CHHHHHHHHHH
Confidence 45677777765432 3555666666543 2234556667777776 77777777653
No 305
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=38.07 E-value=3.8e+02 Score=25.87 Aligned_cols=71 Identities=24% Similarity=0.224 Sum_probs=46.5
Q ss_pred hCCcHHHHHHHHhcCCHH--------HHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHH--HHHHHHHHHHH
Q 008585 398 SLGFFPRLVHVLKAGSLG--------AQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNS--VREVAAQAISS 467 (560)
Q Consensus 398 ~~~~i~~Lv~lL~~~~~~--------v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~--v~~~A~~aL~~ 467 (560)
+....+.++++++.++.. +-+.-..++..++ .|-++.|.+++.+++.. +|..|..+|..
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 466799999999765531 1122222222222 46688888888876544 89999999999
Q ss_pred hcCC-ChhhHHHh
Q 008585 468 LVTL-PQNCREVK 479 (560)
Q Consensus 468 L~~~-~~~~~~~~ 479 (560)
++.. +..+..++
T Consensus 140 l~~~~~~~Re~vi 152 (249)
T PF06685_consen 140 LVHEGPISREEVI 152 (249)
T ss_pred HHHcCCCCHHHHH
Confidence 9955 44455554
No 306
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=37.62 E-value=1.5e+02 Score=30.22 Aligned_cols=69 Identities=7% Similarity=0.121 Sum_probs=42.7
Q ss_pred CHHHHHHhhcCC-------CHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhc----------CCHHHHHHHH
Q 008585 197 NIAALVQLLTAT-------SPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVES----------GSTVGKEKAT 258 (560)
Q Consensus 197 ~v~~Lv~lL~~~-------~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~----------~~~~~~~~a~ 258 (560)
.+|.++.++... +.......++.+..|..++. .-+..+.. .+|+++.++-. ....+|+.|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~-Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ-LIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH-HHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 366666665432 34555666777777877775 22222222 67777766521 2467889999
Q ss_pred HHHHHhhC
Q 008585 259 ISLQRLSM 266 (560)
Q Consensus 259 ~~L~~La~ 266 (560)
.+|..++.
T Consensus 290 ~ll~~i~~ 297 (343)
T cd08050 290 RLLAQICR 297 (343)
T ss_pred HHHHHHHH
Confidence 99888865
No 307
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.16 E-value=2e+02 Score=29.07 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcC--cHHHHHHHhhcCC--chhHHHHHHHHHHHHccCChhH
Q 008585 294 SQAAAACTLKNISAVPEVRQMLAEEG--IVSVMIKLLDCGI--LLGSKEYAAECLQNLTASNENL 354 (560)
Q Consensus 294 ~~~~a~~aL~nLa~~~~~~~~i~e~g--~v~~L~~lL~~~~--~~~v~~~a~~~L~~La~~~~~~ 354 (560)
+|..|...+.++...+.....+.+.+ .+..|++++..++ +..++..|+.+|..|+......
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~ 302 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRC 302 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccH
Confidence 45666667767777778888888766 9999999987543 3478999999999999865543
No 308
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=36.65 E-value=1.1e+02 Score=28.30 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=43.2
Q ss_pred HHHhCCChHHHHHHhcc---CC---------------hHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCc
Q 008585 273 AIVGHGGVRPLIEICQT---GD---------------SVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGIL 333 (560)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~---~~---------------~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~ 333 (560)
.+...|+...++.+++. .. ..+...+...|..++. +.+|+..+.+. ++.++..+.....
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~ 115 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQI 115 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhc
Confidence 44456777777777653 11 2456788899999986 55888888763 3433343333221
Q ss_pred hhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhc
Q 008585 334 LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG 389 (560)
Q Consensus 334 ~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~ 389 (560)
..-..+..+|..+-.+|......+.+.- +..++.++.....+..-+..|..++.
T Consensus 116 -~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 116 -GYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGRQPRYLDFLSSLCV 169 (207)
T ss_dssp --TTHHHHHHHHHHHTT---------------------------------------
T ss_pred -cCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCCChHHHHHHhhhcc
Confidence 1223567788888888877766655443 77888887653344455666666665
No 309
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=35.86 E-value=3.4e+02 Score=24.76 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=55.8
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (560)
...+++-++.-|+..+...+.-|...+.+++......+..-+=...+.+|-..|.+.++++...++.+|..|....+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 34567777777777777777888888888887622222222223578888889999999999999999999965543
No 310
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=35.52 E-value=1.7e+02 Score=27.05 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhcc
Q 008585 414 LGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLL 492 (560)
Q Consensus 414 ~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL 492 (560)
..+-..+...|..++.+ .+++..+.+. ++.+...+.......-..+..+|..+..+....-.-+.+ ..+..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e-~~I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISE-EHIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhH-HHHHHHHHHH
Confidence 46778899999999965 7788887554 443333333322222245677788887665554444433 3478899998
Q ss_pred CCCCchhhHHHHHHHHHHhCC
Q 008585 493 DPSPQNTAKKYAVACLASLSP 513 (560)
Q Consensus 493 ~~~~~~~~~~~a~~~L~~L~~ 513 (560)
...... ..-+..|..++.
T Consensus 152 ~~~gr~---~~~L~~L~~lc~ 169 (207)
T PF01365_consen 152 RKHGRQ---PRYLDFLSSLCV 169 (207)
T ss_dssp ---------------------
T ss_pred HHcCCC---hHHHHHHhhhcc
Confidence 874211 123445555554
No 311
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=35.39 E-value=1.6e+02 Score=26.21 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=57.2
Q ss_pred HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHh--cCCHHHHHH-HHccCC--HHHHHHHHHHHHHhcCC
Q 008585 397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGE--AGCTPLLIK-LLEAKP--NSVREVAAQAISSLVTL 471 (560)
Q Consensus 397 ~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~--~g~i~~Lv~-ll~s~~--~~v~~~A~~aL~~L~~~ 471 (560)
++..+.+.+.+.+.+.++.+-..+++.+..+... .+..+.. +-.++.++. ++.+++ ..-|+.+++++..++.+
T Consensus 70 lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 70 LKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 3455677777777777788888999999998833 3332221 123555555 555544 46788999999999988
Q ss_pred ChhhHHHhhhC
Q 008585 472 PQNCREVKRDD 482 (560)
Q Consensus 472 ~~~~~~~~~~~ 482 (560)
+....++....
T Consensus 148 p~~l~~lf~NY 158 (168)
T PF12783_consen 148 PQFLVDLFVNY 158 (168)
T ss_pred hhHHHHHHHHc
Confidence 87777766543
No 312
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.02 E-value=1e+03 Score=30.06 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=63.8
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCc-hhHHHHH
Q 008585 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVP-EVRQMLA 316 (560)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~-~~~~~i~ 316 (560)
+..++..|...++..+-.+..++.+|+...+...-+ +.....+++-+++ .++..|.--.-+++.+-++. ..-..=.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 444455566667888888888888887643322111 1112445555555 45554433333444332211 1111112
Q ss_pred hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (560)
Q Consensus 317 e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~ 353 (560)
...++..+..+..+++...|+.+++.++..++.....
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p 992 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGP 992 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCc
Confidence 2345777888887777658999999999988875443
No 313
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=34.85 E-value=56 Score=26.89 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHH
Q 008585 255 EKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQ 295 (560)
Q Consensus 255 ~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~ 295 (560)
......+..|+..|+.-..+++.|+++.|+.+|.+++.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 34567788889999888899999999999999998776553
No 314
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.55 E-value=4.5e+02 Score=25.38 Aligned_cols=60 Identities=17% Similarity=0.358 Sum_probs=42.6
Q ss_pred HHhhCCCHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHh-hhcCCHH
Q 008585 191 AVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRL-VESGSTV 252 (560)
Q Consensus 191 ~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~l-L~~~~~~ 252 (560)
..+..|-++.|.+++.+++ .-+|..|+.+|..++...+ .|+.+++ .+..++.. +...+..
T Consensus 106 asv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 106 ASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNYFLERNPSF 169 (249)
T ss_pred HHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHHHhccCchH
Confidence 3445688999999999876 7789999999999988766 6777655 24444443 4443333
No 315
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=32.93 E-value=49 Score=19.42 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh
Q 008585 294 SQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD 329 (560)
Q Consensus 294 ~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~ 329 (560)
+|..++++|+++.. ..+++.|++.++
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 57788888988765 346777777664
No 316
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=32.67 E-value=33 Score=32.78 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=52.4
Q ss_pred hcccCccchhhHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhhHHhhh
Q 008585 35 RQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSG 114 (560)
Q Consensus 35 ~~~~~f~~~~~~i~~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~c~~~~~~~~~~~~s~~~~~~~ 114 (560)
..++.+.++.+.++.||+++... ..-|.=-.+.+..+++..+..+|=++.+=++|| +-.||-.|+-|+..+..
T Consensus 92 ~YVd~l~~~~~~f~~rL~~i~~~----~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKC---s~eGRalM~lD~q~~~~ 164 (234)
T PF10474_consen 92 SYVDQLVQEFQQFSERLDEISKQ----GPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKC---SNEGRALMQLDFQQLQN 164 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC---ChhhHHHHHHHHHHHHH
Confidence 34555777777777787766531 111111223455678888888888888878999 44579999999888888
Q ss_pred hhhh
Q 008585 115 KLDL 118 (560)
Q Consensus 115 ~l~~ 118 (560)
.|+.
T Consensus 165 ~le~ 168 (234)
T PF10474_consen 165 KLEK 168 (234)
T ss_pred HHHH
Confidence 7743
No 317
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.90 E-value=7.6e+02 Score=27.55 Aligned_cols=267 Identities=14% Similarity=0.171 Sum_probs=128.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHH
Q 008585 206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI 284 (560)
Q Consensus 206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv 284 (560)
.+.|+..|.+|=.+|..++.++++- ...--++..+ .+-.+.-|+.+|.++......-..--.-..-..++
T Consensus 16 ~s~D~~~R~~AE~~L~e~s~specl---------skCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrldir~Yil 86 (1082)
T KOG1410|consen 16 ESTDPTARHRAEKALAELSESPECL---------SKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLDIRNYIL 86 (1082)
T ss_pred hcCCHHHHHHHHHHHHHHccCHHHH---------HHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 4567888999999999999888732 2222234433 44566778888888854322110000112225677
Q ss_pred HHhccCChHHHHHHHH----HHHHhcC---CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHH
Q 008585 285 EICQTGDSVSQAAAAC----TLKNISA---VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS 357 (560)
Q Consensus 285 ~ll~~~~~~~~~~a~~----aL~nLa~---~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~ 357 (560)
..+..+.|...-.... .+..+.. .+..+....-...|..+.+.++.++. +-...++.+|..++..
T Consensus 87 nylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~v-e~~~igv~iLsqLvqe------- 158 (1082)
T KOG1410|consen 87 NYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNV-EHCIIGVQILSQLVQE------- 158 (1082)
T ss_pred HHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCch-HHHHHHHHHHHHHHHH-------
Confidence 7887766655444444 4444443 12333444445677778888877654 4444455666666531
Q ss_pred HHhCCCH------HHHHHhccCC---ccHHHHHHHHHHhhc-c-ccHHHHHhCCcHHHHHHHH-hcCC----HHHHHHHH
Q 008585 358 VVSEGGI------RSLLAYLDGP---LPQESAVGALRNLVG-S-VSQEVLISLGFFPRLVHVL-KAGS----LGAQQAAA 421 (560)
Q Consensus 358 i~~~g~l------~~L~~ll~~~---~~~~~a~~~L~nla~-~-~~~~~l~~~~~i~~Lv~lL-~~~~----~~v~~~A~ 421 (560)
+-+..+. ..+..-+.+. ++-..++..|..... + ..+ ...|.+..++++- +.-+ .....+..
T Consensus 159 mN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~---~q~~L~~~vL~L~l~Cl~FDfiGss~DEss 235 (1082)
T KOG1410|consen 159 MNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDR---AQLGLLMQVLKLNLNCLNFDFIGSSTDESS 235 (1082)
T ss_pred hhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccH---hHhhHHHHHHHHHhhhcccccccccccccc
Confidence 1111110 0111111111 111222222222221 0 000 0112222222110 0000 00000011
Q ss_pred HHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC------CChhhHHHhhhCCChHHHHhccCC
Q 008585 422 SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT------LPQNCREVKRDDKSVPNLVQLLDP 494 (560)
Q Consensus 422 ~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~------~~~~~~~~~~~~~~v~~Lv~lL~~ 494 (560)
.-+++.-....-|..+.+...++.+.++..+-.+..-+.|..+|..+++ +...+..++. ..+.-..+.|..
T Consensus 236 ed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~--~Lv~Gvk~il~n 312 (1082)
T KOG1410|consen 236 EDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ--HLVEGVKRILEN 312 (1082)
T ss_pred ccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHhC
Confidence 1111111123346667777788999999999888899999999998883 3444555554 233333444443
No 318
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=31.72 E-value=1.7e+02 Score=24.31 Aligned_cols=39 Identities=23% Similarity=0.117 Sum_probs=32.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHh
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGE 439 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~ 439 (560)
+|+.|+.-|.+.+++|...|..+|...+..++....+..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 478888999999999999999999999977665555544
No 319
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=31.67 E-value=7.6e+02 Score=27.49 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC------------CHHHHHHHHHHHH
Q 008585 195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG------------STVGKEKATISLQ 262 (560)
Q Consensus 195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~ 262 (560)
.+.++.+++-++.++++++..|+..+....+.+...-. .+|.=+++|+.. ++..+.+.+.+|+
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmt-----svpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlS 121 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMT-----SVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILS 121 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccc-----cCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHH
Q ss_pred HhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHH
Q 008585 263 RLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAA 341 (560)
Q Consensus 263 ~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~ 341 (560)
-|+...+.+.....+.......++=.=+..-+|..|..+=-.-...+.-...+.+ ...+..++.+.-.-+ .-..|+
T Consensus 122 vLamt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHN---AE~eAi 198 (878)
T KOG2005|consen 122 VLAMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHN---AEFEAI 198 (878)
T ss_pred HHheeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhcc---chhHHH
Q ss_pred HHHHHHccCChhHHHHHHhCCCHHHHHHhccC-------Cc---cHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHh
Q 008585 342 ECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-------PL---PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLK 410 (560)
Q Consensus 342 ~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-------~~---~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~ 410 (560)
..|..+-. -+.-...++..-.+.+..++.+ |+ ....|..+-..+.. ++.....+..+-++.+.+...
T Consensus 199 DlL~Eve~--id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~ 276 (878)
T KOG2005|consen 199 DLLMEVEG--IDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFT 276 (878)
T ss_pred HHHHHhhh--HhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHH
Q ss_pred c-CCHHHHHHHHHHHHH
Q 008585 411 A-GSLGAQQAAASALCR 426 (560)
Q Consensus 411 ~-~~~~v~~~A~~aL~~ 426 (560)
+ .|+..+++.+..|++
T Consensus 277 s~~D~~~kKQ~~ymLaR 293 (878)
T KOG2005|consen 277 SCTDPLLKKQMAYMLAR 293 (878)
T ss_pred hccCHHHHHHHHHHHHh
No 320
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=30.43 E-value=6.1e+02 Score=26.01 Aligned_cols=175 Identities=11% Similarity=0.077 Sum_probs=90.1
Q ss_pred cCCHHHHHHHHHHHHHHHhhChH--HHHHHhhCCCHHHHHHhhc----C-------CCHHHHHHHHHHHHHHhcCCchHH
Q 008585 165 IGHLEAKHKALDSLVEAMKEDEK--NVLAVMGRSNIAALVQLLT----A-------TSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 165 ~~~~~~~~~A~~~L~~L~~~~~~--~~~~i~~~g~v~~Lv~lL~----~-------~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
.++.+.|.+|-..|.+..+..+. ....+. .-++.+++.++ + .+..+..+|+++|+.+-.+++...
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 34555666666666666543221 111111 22333333332 2 246788899999999998876433
Q ss_pred HHHhCC---CHHHHHHhhhcC--CHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc-----cCChHHHHHHHHH
Q 008585 232 WLVSEG---VLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ-----TGDSVSQAAAACT 301 (560)
Q Consensus 232 ~l~~~g---~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~-----~~~~~~~~~a~~a 301 (560)
.+-+.- .+...+..+.++ +..+.....++|..=..++. +.....+..++..+. -++..+....+.+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 333222 345556666544 44455555555544322221 223333445555443 2455666777778
Q ss_pred HHHhcCCchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585 302 LKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (560)
Q Consensus 302 L~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La 348 (560)
+.++.. .....|.+ .--++.++..+-+... .++..|..++..+.
T Consensus 158 ~~~ll~--q~p~~M~~~~~~W~~~l~~~l~~~~k-~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 158 YKRLLS--QFPQQMIKHADIWFPILFPDLLSSAK-DIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHH
Confidence 887764 33334444 1134555555444443 57776666555443
No 321
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=30.36 E-value=4.2e+02 Score=24.10 Aligned_cols=123 Identities=18% Similarity=0.115 Sum_probs=75.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHH
Q 008585 239 LPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLA 316 (560)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~ 316 (560)
++.++++..+.+..++..|..++..+... --+.. .++|.|+.+..++++.++..|...+..+.. +++.-..=.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56677777788889999999988877542 11222 145999999999999999999999999974 433222211
Q ss_pred hcCcHHHHHHHhhc--CCch-hH---HHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc
Q 008585 317 EEGIVSVMIKLLDC--GILL-GS---KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372 (560)
Q Consensus 317 e~g~v~~L~~lL~~--~~~~-~v---~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~ 372 (560)
-. ++..-..+-.. ++.. .. ...-+.-+..+...+...|..+ +..+++.++
T Consensus 85 ~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~ 140 (187)
T PF12830_consen 85 SE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFD 140 (187)
T ss_pred HH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHH
Confidence 12 34443343321 1110 11 4555666677776555556555 555666554
No 322
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=30.30 E-value=3.7e+02 Score=28.74 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=66.7
Q ss_pred CCCHHHHHHhccCCccHHHHHHHHHHhhccc----cHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCC-----
Q 008585 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSV----SQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTS----- 430 (560)
Q Consensus 361 ~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~----~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~----- 430 (560)
.+.++.+++-++.+.+-+--++.+. .-.++ ..+.+.+.++|+.|+..|.. .+..++..|+..|+.+..-
T Consensus 20 ~~~v~~llkHI~~~~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~ 98 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPAIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAP 98 (475)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 4456666666655555555455544 11122 23344678999999999974 5688999999988887421
Q ss_pred ---------hhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 008585 431 ---------AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLV 469 (560)
Q Consensus 431 ---------~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~ 469 (560)
....+.+.....+..|++.+-. .....-..++..+..|.
T Consensus 99 ~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 99 QNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred cccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 2334555566677777777753 33444455565565555
No 323
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.71 E-value=7.3e+02 Score=26.69 Aligned_cols=171 Identities=16% Similarity=0.078 Sum_probs=93.7
Q ss_pred hhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc--c---------CChHHHHHHHHHHHHhcCCchhHHH
Q 008585 246 VESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ--T---------GDSVSQAAAACTLKNISAVPEVRQM 314 (560)
Q Consensus 246 L~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~--~---------~~~~~~~~a~~aL~nLa~~~~~~~~ 314 (560)
-.+.+..+...|-..|.++..+-+... .+..|+.+.. . .++.+|...+..|+.= ....
T Consensus 246 sad~~~~V~~~ae~~LKr~~~~~ed~~------~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS---~~Aa-- 314 (501)
T PF13001_consen 246 SADSNSSVSDRAEDLLKRLSVSLEDPD------LVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS---VIAA-- 314 (501)
T ss_pred EeCCcchHHHHHHHHHhhcCCCCCCHH------HHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh---HHHH--
Confidence 345677788899999999977633322 2355555544 1 2455665555555431 1000
Q ss_pred HHhcCcHHHHHHHhhcC--CchhHHHHHHHHH---HHHccCChh-HH---HHHHhCCCHHHHHHhc-------cCCccHH
Q 008585 315 LAEEGIVSVMIKLLDCG--ILLGSKEYAAECL---QNLTASNEN-LR---RSVVSEGGIRSLLAYL-------DGPLPQE 378 (560)
Q Consensus 315 i~e~g~v~~L~~lL~~~--~~~~v~~~a~~~L---~~La~~~~~-~~---~~i~~~g~l~~L~~ll-------~~~~~~~ 378 (560)
-.....+.++..-+.+. +. .++..++..+ .....+... .- ...+..++.+.+ +.- .+...+.
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~-klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~ 392 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNS-KLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRS 392 (501)
T ss_pred hCCccHHHHHhccccCCcccc-ccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHH
Confidence 00122333333334443 32 5666666666 444432221 11 112223344333 100 1134678
Q ss_pred HHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585 379 SAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429 (560)
Q Consensus 379 ~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~ 429 (560)
.+-.+|+.++...-.-...+.+.+..|.+.|....++++...-.+|..++.
T Consensus 393 ~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 393 LAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 899999999982111111245679999999988889999888888888874
No 324
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.17 E-value=8e+02 Score=27.59 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=66.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHH--HH----------------HHhhCCCH--HHHHHhhcC--CCHHHH
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKN--VL----------------AVMGRSNI--AALVQLLTA--TSPRIR 213 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~--~~----------------~i~~~g~v--~~Lv~lL~~--~~~~v~ 213 (560)
|.+|+..|.+.+..+..++-..+.++...+.+. .. .+....-- ..+...|+. ..+..|
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~~R 85 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPSYR 85 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCchhH
Confidence 566666666666666555555555554432111 11 11111111 223333332 135678
Q ss_pred HHHHHHHHHHhcCC-chHHHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHh
Q 008585 214 EKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRL 264 (560)
Q Consensus 214 ~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L 264 (560)
..++..|+.+.... .....|.+...++.|+++|..+ +..+...|+.+|..|
T Consensus 86 l~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 86 LQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred HHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 89999999998865 4777888999999999988765 666666777776665
No 325
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.95 E-value=2.1e+02 Score=34.49 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=80.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHH
Q 008585 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAI 274 (560)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l 274 (560)
|.+|.|-.-|.+.+..+|..|...++.+-......-.=-.......+++-+.+.+..+|..+.......-. +++.....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~ 338 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAS 338 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHH
Confidence 67888888888889999999999999998776532220011245555666667788888888877766633 34433322
Q ss_pred HhCCChHHHHHHh-ccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 275 VGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 275 ~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
. ....+. .+.|+.++.....++ ..+........++.. .+..+.+.+.+... .||..|..-|..+-.
T Consensus 339 ~------~~~~l~~~~~D~~~rir~~v~i-~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~-~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 339 T------ILLALRERDLDEDVRVRTQVVI-VACDVMKFKLVYIPL-LLKLVAERLRDKKI-KVRKQAMNGLAQLYK 405 (1266)
T ss_pred H------HHHHHHhhcCChhhhheeeEEE-EEeehhHhhhhhhHH-HHHHHHHHHhhhhH-HHHHHHHHHHHHHHH
Confidence 1 111111 234555443322222 111111222222222 44445555555554 677777776666543
No 326
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.87 E-value=4.4e+02 Score=31.88 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc----C---CHHHHHHHHHHHHHhhCChh-hHHHHHhCCCh
Q 008585 209 SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES----G---STVGKEKATISLQRLSMSAE-MARAIVGHGGV 280 (560)
Q Consensus 209 ~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~----~---~~~~~~~a~~~L~~La~~~~-~~~~l~~~g~i 280 (560)
..+++.....++.++-..+. +.+.. | -+.+.+++++ + ...+...+-.+|.-++.+-= .-..=.=++.+
T Consensus 855 ~~evr~~sl~~l~silet~g--e~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVG--EHLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred cceeeHHHHHHHHHHHhccc--hhhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 36677777777777765443 11111 1 3334444332 1 33444555566665554311 11111114556
Q ss_pred HHHHHHhcc-CChHHHHHHHHHHHHhcC
Q 008585 281 RPLIEICQT-GDSVSQAAAACTLKNISA 307 (560)
Q Consensus 281 ~~Lv~ll~~-~~~~~~~~a~~aL~nLa~ 307 (560)
+.+..+++. .|-.+--.|.+.+|+++.
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 777777765 566777888888888875
No 327
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.85 E-value=7.3e+02 Score=26.83 Aligned_cols=138 Identities=12% Similarity=0.093 Sum_probs=76.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC--------ChHHHHHHHHHHHHhcCCchh
Q 008585 240 PPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--------DSVSQAAAACTLKNISAVPEV 311 (560)
Q Consensus 240 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~--------~~~~~~~a~~aL~nLa~~~~~ 311 (560)
..+++.+.++++..+..|...| ..++..... +|.++.++..+ +-..........|.|..|+.+
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL---~TDsGL~~L------lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSL---ETDSGLQQL------LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---ccCccHHHH------HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 4444555555666565544443 333333322 36677766532 344556778888888888766
Q ss_pred HHHHHhcCcHHHHHHHhh----------cCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCC----ccH
Q 008585 312 RQMLAEEGIVSVMIKLLD----------CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP----LPQ 377 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~----------~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~----~~~ 377 (560)
.-.-.-...+|.++..+- +.+. .+|..|+..+..++......-.. .+.-++..+.+.+.++ ...
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhw-aLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~ 358 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHW-ALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTH 358 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchH-HHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhh
Confidence 543333345666555442 2333 68999999999988754432222 3334456666666542 234
Q ss_pred HHHHHHHHHhh
Q 008585 378 ESAVGALRNLV 388 (560)
Q Consensus 378 ~~a~~~L~nla 388 (560)
..++..|..|.
T Consensus 359 YGai~gL~~lg 369 (576)
T KOG2549|consen 359 YGAIAGLSELG 369 (576)
T ss_pred hhHHHHHHHhh
Confidence 45555555544
No 328
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.16 E-value=58 Score=34.31 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=50.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
..+-.++...+++++..+..++.+++.+.++|...+- ...-..++.++-.... ++-+.+..++..+..
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~-~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEP-RVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccccc-ccchhhhHHHHHhhh
Confidence 4455667778999999999999999987777765544 4455667777776665 677777777777664
No 329
>PLN03205 ATR interacting protein; Provisional
Probab=27.96 E-value=1.3e+02 Score=30.86 Aligned_cols=120 Identities=16% Similarity=0.082 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHh----CChhHHHHHHhcCCHHHHHHHHc-----cCCHHHHHHHHHHHHHhc--C
Q 008585 402 FPRLVHVLKAGSLGAQQAAASALCRVC----TSAEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLV--T 470 (560)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~La----~~~~~~~~i~~~g~i~~Lv~ll~-----s~~~~v~~~A~~aL~~L~--~ 470 (560)
+++|+++-.-++..+...+.+.|..+- .+..--.+-++.+++.. .+++. ...+.+|..|...+.-+. .
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsL-fElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSL-FELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHH-HHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 444444444555555555555544433 22222223344454442 22221 234557777777666555 3
Q ss_pred CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHH
Q 008585 471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMI 522 (560)
Q Consensus 471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~ 522 (560)
++...++.+.....++.+-++|.....-.+++.++..|.-|-.+++.-..+.
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFc 455 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFD 455 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHh
Confidence 3333344444456678899999877555688888888877766665544443
No 330
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=27.66 E-value=2.9e+02 Score=29.53 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=53.8
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC-------------hhHHHHHHhCCCHHHHHHhcc---C
Q 008585 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN-------------ENLRRSVVSEGGIRSLLAYLD---G 373 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~-------------~~~~~~i~~~g~l~~L~~ll~---~ 373 (560)
+....+.+.+.|+.|+.+|....+.+++.+|+.+|..|..-. ..+-+.+.....+..|+..+- .
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 455666779999999999986555589999999998886521 122334555556666666542 1
Q ss_pred CccHHHHHHHHHHhhc
Q 008585 374 PLPQESAVGALRNLVG 389 (560)
Q Consensus 374 ~~~~~~a~~~L~nla~ 389 (560)
.....+++.++-.+.+
T Consensus 133 ~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 133 GSSLVNGVSILIELIR 148 (475)
T ss_pred cchHHHHHHHHHHHHH
Confidence 4455666777666665
No 331
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=27.43 E-value=1.4e+03 Score=29.16 Aligned_cols=255 Identities=13% Similarity=0.023 Sum_probs=139.1
Q ss_pred CHHHHHHHHHHHHHHHhhChHH---HHHHhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHH
Q 008585 167 HLEAKHKALDSLVEAMKEDEKN---VLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPL 242 (560)
Q Consensus 167 ~~~~~~~A~~~L~~L~~~~~~~---~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L 242 (560)
+.+....|+..|.+++..--+. ...-.+...+.++..++++ .+.++++..+.++.++..... .-++. +-..+
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nIkS-GWktI 1225 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNVKS-GWKSM 1225 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhhhc-CcHHH
Confidence 5567788888888887532111 0111133567788877764 458999999999998865422 22233 45555
Q ss_pred HHhhh----cCCHHHHHHHHHHHHHhhCChhh------HHHHHhCCChHHHHHHhccC-ChHHHHHHHHHHHHhcC----
Q 008585 243 IRLVE----SGSTVGKEKATISLQRLSMSAEM------ARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISA---- 307 (560)
Q Consensus 243 v~lL~----~~~~~~~~~a~~~L~~La~~~~~------~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~---- 307 (560)
+.++. +.++.+...|..++..+..+.-. ...+ ..+|..|.++.+.. +.++--.|...||+++.
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~ 1303 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE 1303 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh
Confidence 55554 44667777787877776532110 1111 12334455555432 45555667777776521
Q ss_pred Cc------------------------hhHHHHH-----hcCcHHHHHHH---hhcCCchhHHHHHHHHHHHHccC-----
Q 008585 308 VP------------------------EVRQMLA-----EEGIVSVMIKL---LDCGILLGSKEYAAECLQNLTAS----- 350 (560)
Q Consensus 308 ~~------------------------~~~~~i~-----e~g~v~~L~~l---L~~~~~~~v~~~a~~~L~~La~~----- 350 (560)
.+ +.-..+. ...-+|.|..+ ..+.. .+||..|+.+|-.+-..
T Consensus 1304 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~R-lEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1304 GDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPR-PEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred ccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhhccC
Confidence 00 0000000 11234444444 33443 48999999988777642
Q ss_pred ChhHHHHHHhCCCHHHHHHhccC-------C------------------ccHHHHHHHHHHhhc--cccHHHH--HhCCc
Q 008585 351 NENLRRSVVSEGGIRSLLAYLDG-------P------------------LPQESAVGALRNLVG--SVSQEVL--ISLGF 401 (560)
Q Consensus 351 ~~~~~~~i~~~g~l~~L~~ll~~-------~------------------~~~~~a~~~L~nla~--~~~~~~l--~~~~~ 401 (560)
++..+..++. +++-+++..+.. + ...+.+..+|.++.. ...-+.+ .-.++
T Consensus 1383 s~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~ 1461 (1780)
T PLN03076 1383 SLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKV 1461 (1780)
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444444 445555554421 0 023555566666665 2222222 22345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585 402 FPRLVHVLKAGSLGAQQAAASALCRVCT 429 (560)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~La~ 429 (560)
+..|...+...+..+.+....+|.+|..
T Consensus 1462 l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 5556666667788888888888888863
No 332
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.59 E-value=1.3e+02 Score=23.97 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHh
Q 008585 209 SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRL 264 (560)
Q Consensus 209 ~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L 264 (560)
+..+|+.|+..|..++..-.....-.+..++..+.+.+.++ +.....-|...|..|
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999987543222222334667777777754 555667777777777
No 333
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=26.27 E-value=1.1e+02 Score=18.18 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh
Q 008585 293 VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD 329 (560)
Q Consensus 293 ~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~ 329 (560)
.+|..++.+|.++.. ..+++.|++.+.
T Consensus 2 ~vR~~aa~aLg~~~~----------~~a~~~L~~~l~ 28 (30)
T smart00567 2 LVRHEAAFALGQLGD----------EEAVPALIKALE 28 (30)
T ss_pred HHHHHHHHHHHHcCC----------HhHHHHHHHHhc
Confidence 578889999998843 234555665554
No 334
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.12 E-value=4.3e+02 Score=22.86 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=54.1
Q ss_pred hchHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHH-HHHhhcC---CCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAA-LVQLLTA---TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~-Lv~lL~~---~~~~v~~~A~~~L~~La~ 225 (560)
...++.+-.+|+. .++.+...|+..|-.+.+... .....+...+.+.. |++++.. .+..++...+..+...+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3447777888875 478888889887777776553 45566777788887 9999863 235889999888887765
No 335
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.02 E-value=72 Score=32.08 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=50.8
Q ss_pred HHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhh--cCCchhHHHHHHHHHHHHccCChhHHHHHHh
Q 008585 297 AAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLD--CGILLGSKEYAAECLQNLTASNENLRRSVVS 360 (560)
Q Consensus 297 ~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~--~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~ 360 (560)
+..+.+.+|+ .+++++..+.|-|+++.++.-.. +.++ .+++.+.-|+.+|..+|..+++.+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nP-fi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNP-FIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCCh-HHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 4667888888 48899999999999887776533 4444 89999999999999999888876655
No 336
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=25.96 E-value=6.8e+02 Score=25.06 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=74.9
Q ss_pred cHHHHHHHhhcC---CchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhccccHHHH
Q 008585 320 IVSVMIKLLDCG---ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVL 396 (560)
Q Consensus 320 ~v~~L~~lL~~~---~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~~~~l 396 (560)
++..|+.++-.. ...++|..|+.|+.....+|++.+..+++. ++..+..... ..
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~--------~i~~~~~~~~--------~~------- 91 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLST--------LIPSYASGNS--------DD------- 91 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHT--------TSSTT--SS----------S-------
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHH--------HhccCCCCcc--------cc-------
Confidence 444455543322 345789999999999999999887655442 2221000000 00
Q ss_pred HhCCcHHHHHHHHh---cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhc------------CCHHHHHHHHcc-----CCH
Q 008585 397 ISLGFFPRLVHVLK---AGSLGAQQAAASALCRVCTS-AEMKKLVGEA------------GCTPLLIKLLEA-----KPN 455 (560)
Q Consensus 397 ~~~~~i~~Lv~lL~---~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~------------g~i~~Lv~ll~s-----~~~ 455 (560)
...+++..|+. .. +.|+.-..-|+.++.++..+ ++.+..+..- ..++.+..++.. .++
T Consensus 92 ~~~nl~~~Ll~-~~~~~~~dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ 170 (312)
T PF04869_consen 92 PIANLLTALLD-YDSDLSLDPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDP 170 (312)
T ss_dssp SSS-HHHHHT-------SS-HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--H
T ss_pred hhhHHHHHHHH-hhccccCCHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCch
Confidence 00011112221 11 23444445566666666654 3333333211 145556665543 344
Q ss_pred HHHHHHHHHHHHhc-CCChhhHHHhhhCCChHHHHhccCCC
Q 008585 456 SVREVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPS 495 (560)
Q Consensus 456 ~v~~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~ 495 (560)
.++..-+..|+.-. .++.....|+.+...+..|++.....
T Consensus 171 ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~ 211 (312)
T PF04869_consen 171 RIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQS 211 (312)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcC
Confidence 55555555555544 45566788888778889999976544
No 337
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.90 E-value=6.9e+02 Score=28.08 Aligned_cols=59 Identities=17% Similarity=0.015 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 454 PNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 454 ~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
.+..|..++..|+.+....+..-..+.+...+..|+..|.......+...|+.+|..|-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 45688899999999997655545555567888999988876644455556666665443
No 338
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=25.54 E-value=1.4e+02 Score=24.87 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=32.3
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhh
Q 008585 442 CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480 (560)
Q Consensus 442 ~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (560)
+++.|+.-+.+.+++|...|..+|...+.++.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 488999999999999999999999999877755555543
No 339
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=25.41 E-value=1.4e+03 Score=28.46 Aligned_cols=291 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh-
Q 008585 239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE- 317 (560)
Q Consensus 239 i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e- 317 (560)
...+.+++.-.+..++......|-.+..+....... ..|..++.. ++.+....+.+|.||.-+++....+.+
T Consensus 194 ~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~h~~v~------~~L~~ll~~-~~~L~~~iLd~Ls~L~Ls~~~l~~vr~~ 266 (1426)
T PF14631_consen 194 TDKLFEVLSIAPVELQKEIISSLPEILDDSQHDEVV------EELLELLQE-NPELTVPILDALSNLNLSPELLEEVREK 266 (1426)
T ss_dssp HHHHHHHHHHS-TTTHHHHHHTHHHHS-GGGHHHHH------HHHHHHHHH--STTHHHHHHHHHHS---HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcchhHHHHH------HHHHHHHhc-CCchhhhHHHHHhcCCCCHHHHHHHHHH
Q ss_pred ---------cCcHHHHHHH-hhcCCchhHHHHHHHHHHHH---------------------ccCChhHHHHHHhCCCHHH
Q 008585 318 ---------EGIVSVMIKL-LDCGILLGSKEYAAECLQNL---------------------TASNENLRRSVVSEGGIRS 366 (560)
Q Consensus 318 ---------~g~v~~L~~l-L~~~~~~~v~~~a~~~L~~L---------------------a~~~~~~~~~i~~~g~l~~ 366 (560)
..-+|.++++ |.+-+..+..+.....=.+| ..........-...+....
T Consensus 267 vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~l 346 (1426)
T PF14631_consen 267 VLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCEKL 346 (1426)
T ss_dssp HHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHHHHHH-------------------------------HHHHHHHH
T ss_pred HHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHHHHccccccccchhhcccccccccCcccccccccccccccHHHH
Q ss_pred HHHhccC-----CccHHHHHHHHHHhhccccHHHH---------------------------------------------
Q 008585 367 LLAYLDG-----PLPQESAVGALRNLVGSVSQEVL--------------------------------------------- 396 (560)
Q Consensus 367 L~~ll~~-----~~~~~~a~~~L~nla~~~~~~~l--------------------------------------------- 396 (560)
++..|.. ..+.+.=+.+|.++......+.+
T Consensus 347 il~~lks~lr~~k~l~eawiK~I~~~~~~~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~~~~ 426 (1426)
T PF14631_consen 347 ILDVLKSGLRFSKDLSEAWIKAIESLEDASDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQTFKGHS 426 (1426)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHhcCCCccccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHHHHhhhH
Q ss_pred -HhCCcHHHHHH----HHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 397 -ISLGFFPRLVH----VLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 397 -~~~~~i~~Lv~----lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
+-...++.++. +|++.++.++.-+......+-.. ...++.+ +..|+..+-+++..-...|+.+|+.|+
T Consensus 427 ~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeV-----v~~Lvthi~sg~~~ev~~aL~vL~~L~ 501 (1426)
T PF14631_consen 427 EVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEV-----VGALVTHIGSGNSQEVDAALDVLCELA 501 (1426)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHH-----HHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHH-----HHHHHHHHcCCcHHHHHHHHHHHHHHH
Q ss_pred CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHHHH
Q 008585 470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKL 544 (560)
Q Consensus 470 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl 544 (560)
..+...+..-...+..++..++.=...-++ ....++..|+-.......-++...--.+.+-+...++.-|+.
T Consensus 502 --~~~~~~l~~fa~~l~giLD~l~~Ls~~qiR-~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 502 --EKNPSELQPFATFLKGILDYLDNLSLQQIR-KLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp --HH-HHHHHHTHHHHHGGGGGGGG--HHHHH-HHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred --hccHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHH
No 340
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.34 E-value=1.7e+02 Score=31.10 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=54.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHh
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQAISSL 468 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~~aL~~L 468 (560)
++..|.+-+.+.++.++..|+..|--+..+ ..+...+.+.++++.+|++.+.+ +..||++++..|-.=
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 466677777888889999999977777744 77788888999999999999754 566999988887543
No 341
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.25 E-value=1.3e+02 Score=29.74 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=45.9
Q ss_pred hhhhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh--------------HHHHHHhhCCCHHHHHHhhcC
Q 008585 149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE--------------KNVLAVMGRSNIAALVQLLTA 207 (560)
Q Consensus 149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~--------------~~~~~i~~~g~v~~Lv~lL~~ 207 (560)
......++..++..|..++.+.+.+|+.+|.-++.+.- +|...+.+.|+++++..+|+.
T Consensus 55 ~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 55 FDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44457789999999999999999999999999875421 244566677888888888754
No 342
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.68 E-value=3.9e+02 Score=27.45 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=57.4
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhc
Q 008585 400 GFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLV 469 (560)
Q Consensus 400 ~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~L~ 469 (560)
..+..+.+-|++.++.|...|+..+..++.+ ..++..+....+...|..++. +.++.|++.-...+...+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 3577788888999999999999999998844 778888888889999999998 567778877777776665
No 343
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=23.91 E-value=1.6e+02 Score=21.20 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=33.1
Q ss_pred HHHhCCChhhHHHHHHcChhHHHHHhhccC-chhHHHHHHHHh
Q 008585 508 LASLSPSKKCKKLMISYGAIGYLKKLSEMD-IPGARKLLERLE 549 (560)
Q Consensus 508 L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~-~~~akkl~~~l~ 549 (560)
|.-||....+|..+.+.|+.+.+..+=+.+ ++++....+++-
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV 44 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLV 44 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHH
Confidence 567888899999999999999988765544 577777777664
No 344
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=23.46 E-value=8.1e+02 Score=25.10 Aligned_cols=133 Identities=19% Similarity=0.143 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHhcCCchhHHHHHhcCc---HHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHH
Q 008585 291 DSVSQAAAACTLKNISAVPEVRQMLAEEGI---VSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSL 367 (560)
Q Consensus 291 ~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~---v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L 367 (560)
+..+...|+..|..+-.+++....+.+.-+ +...+..+.+++. -+..+...++.|+..+= ...+.....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~--~K~i~~~~l~~ls~Q~f--~~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS--PKSICTHYLWCLSDQKF--SPKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCC--CCcccchhhHHHH
Confidence 456778899999999888887777766433 3444444544432 23334444444444221 1123333344455
Q ss_pred HHhcc-------CCccHHHHHHHHHHhhccccHHHHH--hCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 368 LAYLD-------GPLPQESAVGALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 368 ~~ll~-------~~~~~~~a~~~L~nla~~~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
+..+. +..+....+.++.++... .++.+. ...-++.++..+-+....++..|...+..+.
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q-~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQ-FPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 55442 244567778888888762 112222 1235777777777777777777665555544
No 345
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=22.38 E-value=9.5e+02 Score=25.49 Aligned_cols=88 Identities=23% Similarity=0.156 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc--CC------ccHHHHHHHHHHhhccc---cHHHHHhCC--c
Q 008585 335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD--GP------LPQESAVGALRNLVGSV---SQEVLISLG--F 401 (560)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~--~~------~~~~~a~~~L~nla~~~---~~~~l~~~~--~ 401 (560)
+....+..++.||+...-... .+..|..+|. ++ .+...|+.+++.+.... ....+.-.- +
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 466778888888886443321 2677788883 21 23457888888887622 111221122 6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 008585 402 FPRLVHVLKAGSLGAQQAAASALCRVCT 429 (560)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~La~ 429 (560)
++.+...++.+++.+-......+.++-.
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 7888888888877777677777777663
No 346
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.20 E-value=9.1e+02 Score=25.18 Aligned_cols=250 Identities=13% Similarity=0.071 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHHhhCChhh--HHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHH
Q 008585 250 STVGKEKATISLQRLSMSAEM--ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIK 326 (560)
Q Consensus 250 ~~~~~~~a~~~L~~La~~~~~--~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~ 326 (560)
++.-...+-..|.++..+++. .........+..|+.++.++|+.-|......|.++-. ..+.|..+.. .....+.+
T Consensus 103 ~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~ 181 (409)
T PF01603_consen 103 SWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYR 181 (409)
T ss_dssp THHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHH
Confidence 333344555666666444332 2223344556889999999999999999999988754 4444544443 35566677
Q ss_pred HhhcCCchhHHHHHHHHHHHHccCCh-hHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc--cccHHHHHhCC
Q 008585 327 LLDCGILLGSKEYAAECLQNLTASNE-NLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLG 400 (560)
Q Consensus 327 lL~~~~~~~v~~~a~~~L~~La~~~~-~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~ 400 (560)
++.......-....++.++.+..+.. ..++.... =....++.+... ......-..++..+.. +... .-
T Consensus 182 fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~-----~~ 255 (409)
T PF01603_consen 182 FIYETERHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLA-----EP 255 (409)
T ss_dssp HHHTTS--STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGH-----HH
T ss_pred HhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH-----HH
Confidence 77654433456667888888876422 11111100 001223333333 2233444444444443 1111 11
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC---hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHH
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS---AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCRE 477 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~---~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~ 477 (560)
++..+++.--..++.-+..-..-+..+... .+..+.+ .-....+.+.+.+.+..|.+.|+.... .+....
T Consensus 256 ~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~--~~lf~~la~ci~S~h~qVAErAl~~w~-----n~~~~~ 328 (409)
T PF01603_consen 256 VIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM--VPLFKRLAKCISSPHFQVAERALYFWN-----NEYFLS 328 (409)
T ss_dssp HHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH--HHHHHHHHHHHTSSSHHHHHHHHGGGG-----SHHHHH
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHC-----CHHHHH
Confidence 234444444445555555556666666543 2222222 234566677778888888887765432 222222
Q ss_pred HhhhC--CChHHHHhccCC----CCchhhHHHHHHHHHHhCC
Q 008585 478 VKRDD--KSVPNLVQLLDP----SPQNTAKKYAVACLASLSP 513 (560)
Q Consensus 478 ~~~~~--~~v~~Lv~lL~~----~~~~~~~~~a~~~L~~L~~ 513 (560)
++.+. ..++.+..-|.. .=...++..+..++..|..
T Consensus 329 li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 329 LISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22111 122444444433 2123467777777766653
No 347
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=21.76 E-value=1.5e+03 Score=27.53 Aligned_cols=259 Identities=19% Similarity=0.144 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhhHHhhhhhhhhhhchhhHHhhCCCCCCCcccccCCCCCchhh
Q 008585 71 ALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEA 150 (560)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~l~~~c~~~~~~~~~~~~s~~~~~~~~l~~~~~d~~~l~~~~~l~~~~~~~~~~~~~~a~~~ 150 (560)
|.-++.+..+..+-+.-.+.-..|.++ .+.. -|.+....|-+.+-+-.|-+|.|..-..+.+..... ...+
T Consensus 43 ~~t~~~l~~~~d~~~~~~~e~~~~~d~--~~~w----~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~-~~~~-- 113 (1549)
T KOG0392|consen 43 PSTKRELDEVVDKSKAFDEENDNCPDG--ERQW----PFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHG-DSLS-- 113 (1549)
T ss_pred cchhhhhhhhcchhhccccccCCCCCc--cccc----cHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhc-chhh--
Confidence 333578888877766555533445444 2222 344666777777888889888766422222221111 1111
Q ss_pred hhhchHHHHHHHH---------c---cC--CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHH
Q 008585 151 TTHGNTRELLARL---------Q---IG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKT 216 (560)
Q Consensus 151 ~~~~~i~~Ll~~L---------~---~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A 216 (560)
...+.+++.++ . +. -..++..++.+|..+...-.... +. ..++.+.+++..+..+++.-.
T Consensus 114 --~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~--~~--~~~~il~q~~~q~~w~ir~Gg 187 (1549)
T KOG0392|consen 114 --YELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESL--IK--ETLDILLQMLRQPNWEIRHGG 187 (1549)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHh--hH--HHHHHHHHHHcCcchhheech
Confidence 12233333332 0 11 12345555555555554322111 10 234555555555554444433
Q ss_pred HHHHHHHhcCCchHHHHH--hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh--hHHHHHhCCChHHHHHHhccCCh
Q 008585 217 VTVICSLAESGSCENWLV--SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE--MARAIVGHGGVRPLIEICQTGDS 292 (560)
Q Consensus 217 ~~~L~~La~~~~~~~~l~--~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~~~~l~~~g~i~~Lv~ll~~~~~ 292 (560)
+..+..... -....+. -..+++..+..|.+.+..++..|+..+.-...... ....+. ..+..+..++..-+.
T Consensus 188 ll~iky~~a--ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~ldd 263 (1549)
T KOG0392|consen 188 LLGIKYNVA--IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDD 263 (1549)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhh
Confidence 333322211 0111111 11245666677788888888888888777655431 112221 122333333322111
Q ss_pred --HHHHHHHHHHHHhcCCchhHHHHH----hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 293 --VSQAAAACTLKNISAVPEVRQMLA----EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 293 --~~~~~a~~aL~nLa~~~~~~~~i~----e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
.........+..++..++...... +.|.+|.+..++.+.-. .++..++..+..+..
T Consensus 264 l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~-sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 264 LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTIS-SVRRAALETLAMLLE 325 (1549)
T ss_pred cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 111122222333333333222221 25788888888888775 788888888888776
No 348
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=21.74 E-value=8.9e+02 Score=25.60 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHhhCCCHH-HHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH-hCCCHHHHHHhhh
Q 008585 170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIA-ALVQLLTATSPRIREKTVTVICSLAESGSCENWLV-SEGVLPPLIRLVE 247 (560)
Q Consensus 170 ~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~-~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~-~~g~i~~Lv~lL~ 247 (560)
.|..|+.+|..++..-+..... .... .|+..|++...--|..|+.++...+.....+..-. -....+.|..+|.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~----~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQ----EIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHH----HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 4777888998888653221111 1233 68899999887778888888888877653211100 1123455666666
Q ss_pred cC
Q 008585 248 SG 249 (560)
Q Consensus 248 ~~ 249 (560)
++
T Consensus 179 ~~ 180 (441)
T PF12054_consen 179 NP 180 (441)
T ss_pred CC
Confidence 33
No 349
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=1.2e+03 Score=26.23 Aligned_cols=265 Identities=14% Similarity=0.116 Sum_probs=132.8
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 156 TRELLARL-QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 156 i~~Ll~~L-~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
+..+...| .+.|+..+..|-.+|.++.. +|++ +....-++..+ .+..+..|..+|..+......-...
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~-spec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSE-SPEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 44555555 46678889999999999875 4433 22222334433 3677777777777776543211111
Q ss_pred HhCCCHHHHHHhhhcCCHHH----HHHHHHHHHHhhC---ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc
Q 008585 234 VSEGVLPPLIRLVESGSTVG----KEKATISLQRLSM---SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS 306 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~----~~~a~~~L~~La~---~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa 306 (560)
..-+.-..+++.|.++.|.. ...-+..+.+|+. -+..+....=.+.+..+.++++.++.+--..+...|..|.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 12234456777777754433 3333444455543 2344444444556677777777665555455555565553
Q ss_pred C--------Cc-----hhHHHHHhcCcHH---HHHHHhhcCC-----c---hhHHHHHHHHHHHHcc----------CC-
Q 008585 307 A--------VP-----EVRQMLAEEGIVS---VMIKLLDCGI-----L---LGSKEYAAECLQNLTA----------SN- 351 (560)
Q Consensus 307 ~--------~~-----~~~~~i~e~g~v~---~L~~lL~~~~-----~---~~v~~~a~~~L~~La~----------~~- 351 (560)
. .| .+...+.+..... .-..+|+... + ......++..-.|... ..
T Consensus 157 qemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEsse 236 (1082)
T KOG1410|consen 157 QEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSE 236 (1082)
T ss_pred HHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccc
Confidence 1 11 1122233322222 2223333211 1 1222222222111111 00
Q ss_pred -------hhHHHHHH-hCCCHHHHHHhccC--CccHHHHHHHHHHhhc-----cccHHH-HHhCCcHHHHHHHHhc----
Q 008585 352 -------ENLRRSVV-SEGGIRSLLAYLDG--PLPQESAVGALRNLVG-----SVSQEV-LISLGFFPRLVHVLKA---- 411 (560)
Q Consensus 352 -------~~~~~~i~-~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-----~~~~~~-l~~~~~i~~Lv~lL~~---- 411 (560)
|...+.++ +...++..+.+..+ +...+.++.+|..++. .++.+. -.-.+.+.-....|.+
T Consensus 237 d~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~L 316 (1082)
T KOG1410|consen 237 DLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGL 316 (1082)
T ss_pred cccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 11233333 45567777787776 5678889999999987 122221 1112233444445554
Q ss_pred CCHHHHHHHHHHHHHHhCC
Q 008585 412 GSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 412 ~~~~v~~~A~~aL~~La~~ 430 (560)
.|+.--..-|+.|+++-.+
T Consensus 317 sD~~nyHeFCRllaRlktN 335 (1082)
T KOG1410|consen 317 SDPANYHEFCRLLARLKTN 335 (1082)
T ss_pred CCcchHHHHHHHHHHHHhh
Confidence 2455556666777666543
No 350
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=21.53 E-value=7.5e+02 Score=24.00 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=20.7
Q ss_pred hHHHHHhcCcHHHHHHHhhc----------CCchhHHHHHHHHHHHHcc
Q 008585 311 VRQMLAEEGIVSVMIKLLDC----------GILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 311 ~~~~i~e~g~v~~L~~lL~~----------~~~~~v~~~a~~~L~~La~ 349 (560)
.++.|.+.+++.+++.++.. +.+..+.+.++..+.|+..
T Consensus 101 yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~ 149 (266)
T PF04821_consen 101 YKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLA 149 (266)
T ss_pred HHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 34455555666666655521 1112455666777777765
No 351
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.50 E-value=86 Score=33.13 Aligned_cols=67 Identities=22% Similarity=0.155 Sum_probs=46.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHh
Q 008585 444 PLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL 511 (560)
Q Consensus 444 ~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L 511 (560)
..+-.+...++++++..|..++.+++.+.+|++..+-+...-..+++++..... .+.+.+..++..+
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~-~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEP-RVNKAAARALAIL 397 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccccc-ccchhhhHHHHHh
Confidence 334445567889999999999999999999988777666666777788776522 2333444444433
No 352
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=21.13 E-value=5.9e+02 Score=22.60 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=61.9
Q ss_pred HHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc--CCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHH---HhcCC
Q 008585 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD--GPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHV---LKAGS 413 (560)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~--~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~l---L~~~~ 413 (560)
-+...|.++...++..|..+ ++.+...+- ++....+=..+|..++... +..+ ......+..+ +..-.
T Consensus 37 LG~~IL~~~fk~h~~~r~~I-----le~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~v--le~~~~l~~~ld~l~~lp 108 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEI-----LEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTV--LECSSKLKELLDYLSFLP 108 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHH-----HHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHH--S-S-HHHHGGGGGTTTS-
T ss_pred HHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHH--HHHHHHHHHHHHHHHhCC
Confidence 56667777776556555544 455555442 1222234467777777521 1111 1223333333 33344
Q ss_pred HHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 008585 414 LGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465 (560)
Q Consensus 414 ~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL 465 (560)
..+...-..++.-|... +..++.+ +-.|-+.+.+.+.+.|..|...+
T Consensus 109 ~~~a~~ll~Al~PLi~~s~~lrd~l-----ilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 109 GDVAIGLLRALLPLIKFSPSLRDSL-----ILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHH-----HHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHH-----HHHHHHHHccccHHHHHHHHHHh
Confidence 56666666677766643 5666655 77788888888888888877654
No 353
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=21.07 E-value=1.6e+02 Score=29.23 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=43.8
Q ss_pred hCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC---------------hhHHHHHHhcCCHHHHHHHHc
Q 008585 398 SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS---------------AEMKKLVGEAGCTPLLIKLLE 451 (560)
Q Consensus 398 ~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~---------------~~~~~~i~~~g~i~~Lv~ll~ 451 (560)
+..++..+++-|.+.+...+..|+.+|..++.+ ..+...+.+.|+++.|+.++.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456788889989888888999999999998754 135566788899999999995
No 354
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=20.72 E-value=1.3e+03 Score=26.28 Aligned_cols=108 Identities=9% Similarity=0.109 Sum_probs=66.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH-
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV- 359 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~- 359 (560)
..+...+..+++..-...+.++.+++.-+.....= +..-++.-..-.+..-. .+......+|..++..+++.-..++
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~-~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLG-QITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 34455555667777777788888877532111111 11111111122222222 5677788899999987776555665
Q ss_pred hCCCHHHHHHhccCC--ccHHHHHHHHHHhhcc
Q 008585 360 SEGGIRSLLAYLDGP--LPQESAVGALRNLVGS 390 (560)
Q Consensus 360 ~~g~l~~L~~ll~~~--~~~~~a~~~L~nla~~ 390 (560)
+.+....++.++-+| ++...|...|......
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 467788888888664 4889999999888763
No 355
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=20.67 E-value=7.6e+02 Score=32.22 Aligned_cols=194 Identities=15% Similarity=0.106 Sum_probs=95.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHh
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS 235 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~ 235 (560)
++.++..++.+....+..+...+..++..++.++......-.+..+-.+--++...+.+..+.-+..+.......-.-.-
T Consensus 567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v 646 (2341)
T KOG0891|consen 567 LRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV 646 (2341)
T ss_pred HHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc
Confidence 44455556666666666666667666666664433222211122222221122233333443333333322221111112
Q ss_pred CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh-hHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchh--
Q 008585 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEV-- 311 (560)
Q Consensus 236 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~-- 311 (560)
...+..++..+.+.+..+...+..++..|+.... --...++ ..++.+.+.+.+ .+..-+..+..++.++......
T Consensus 647 ~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v 725 (2341)
T KOG0891|consen 647 GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVV 725 (2341)
T ss_pred CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEe
Confidence 2345666667777777777778888888865322 1112222 334555555544 3445567888899998754322
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~ 350 (560)
.......-.+..++..+..+....++..+...++++...
T Consensus 726 ~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 726 DPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 111111334445555554443335666666666655443
No 356
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=20.47 E-value=4.3e+02 Score=30.69 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc
Q 008585 335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA 411 (560)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~ 411 (560)
.++..+.-+|+++|-.++.+... .+|.+++-|+. ..++-+.+-+++-+|.. -.+.-...+|.+..-|.+
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~---YTam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSS---YTAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHH---HHHHHHHhhHHHHHHhcC
Confidence 46777888889988866654332 26777777753 23455555555555531 112235679999999999
Q ss_pred CCHHHHHHHHHHHHHHhCChhHHHHHHhcC--CHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 412 GSLGAQQAAASALCRVCTSAEMKKLVGEAG--CTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 412 ~~~~v~~~A~~aL~~La~~~~~~~~i~~~g--~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
+++-|++.+...|.+|-...-.+ . .| ++..+..++ ..++++|..|-..++.+.
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~vK-w---~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGIVK-W---NGELFIRFMLALL-DANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhhhh-c---chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHH
Confidence 99999999999999987532110 0 11 223333333 356777777777777765
No 357
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.20 E-value=69 Score=23.40 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=15.9
Q ss_pred ccCccchhhHHHHHHhccc
Q 008585 37 IKGFPGRWKMIISKLEQIP 55 (560)
Q Consensus 37 ~~~f~~~~~~i~~k~~~l~ 55 (560)
..+++.+|..+|+||...+
T Consensus 50 ~~~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 50 PPSIKVRWDLLKNRLMSAC 68 (69)
T ss_pred CCCCcccHHHHHHHHHhcC
Confidence 3678999999999998754
Done!