Query 008585
Match_columns 560
No_of_seqs 391 out of 2304
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 06:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 3.6E-36 1.2E-40 322.5 38.1 393 152-546 55-470 (510)
2 3tpo_A Importin subunit alpha- 100.0 3E-35 1E-39 317.0 39.6 394 152-547 74-490 (529)
3 3l6x_A Catenin delta-1; cateni 100.0 2.5E-36 8.5E-41 321.4 30.0 373 153-528 47-491 (584)
4 4b8j_A Importin subunit alpha- 100.0 1.7E-34 5.9E-39 311.3 40.7 394 152-547 72-489 (528)
5 1xm9_A Plakophilin 1; armadill 100.0 2.3E-35 7.9E-40 311.6 27.5 362 155-519 3-455 (457)
6 3now_A UNC-45 protein, SD10334 100.0 9.4E-35 3.2E-39 319.1 30.9 382 154-537 330-762 (810)
7 1wa5_B Importin alpha subunit; 100.0 7.2E-33 2.5E-37 298.8 42.6 391 152-545 85-501 (530)
8 3l6x_A Catenin delta-1; cateni 100.0 1.2E-33 4.2E-38 300.7 35.0 370 173-547 27-469 (584)
9 3now_A UNC-45 protein, SD10334 100.0 3.1E-34 1.1E-38 315.0 31.1 360 152-512 375-781 (810)
10 1xm9_A Plakophilin 1; armadill 100.0 4.8E-33 1.7E-37 293.9 33.5 348 197-548 3-443 (457)
11 3tpo_A Importin subunit alpha- 100.0 3.3E-32 1.1E-36 293.3 37.6 359 153-513 118-497 (529)
12 3ul1_B Importin subunit alpha- 100.0 1.7E-32 5.9E-37 293.9 34.6 359 153-513 99-478 (510)
13 1jdh_A Beta-catenin; beta-cate 100.0 2.8E-32 9.5E-37 293.8 36.4 386 154-544 101-520 (529)
14 1jdh_A Beta-catenin; beta-cate 100.0 1.3E-32 4.6E-37 296.2 32.9 388 153-543 16-415 (529)
15 3nmz_A APC variant protein; pr 100.0 4.9E-33 1.7E-37 289.9 27.5 320 153-473 69-453 (458)
16 3nmz_A APC variant protein; pr 100.0 7.6E-33 2.6E-37 288.5 27.2 359 151-515 29-452 (458)
17 2z6h_A Catenin beta-1, beta-ca 100.0 3.1E-31 1.1E-35 292.6 40.8 386 154-543 56-516 (644)
18 2jdq_A Importin alpha-1 subuni 100.0 1E-31 3.5E-36 283.2 35.4 383 156-543 22-432 (450)
19 2z6h_A Catenin beta-1, beta-ca 100.0 8.3E-32 2.8E-36 297.2 33.7 383 154-539 14-408 (644)
20 4b8j_A Importin subunit alpha- 100.0 3.9E-31 1.3E-35 285.1 36.1 361 153-515 116-498 (528)
21 2z6g_A B-catenin; FULL-length, 100.0 1.5E-30 5E-35 292.2 36.6 385 154-543 234-652 (780)
22 1wa5_B Importin alpha subunit; 100.0 1.7E-30 5.8E-35 280.2 35.3 361 153-515 129-512 (530)
23 2jdq_A Importin alpha-1 subuni 100.0 2.8E-30 9.4E-35 272.2 33.0 358 154-514 64-444 (450)
24 2z6g_A B-catenin; FULL-length, 100.0 3.3E-30 1.1E-34 289.3 32.4 387 153-542 149-547 (780)
25 3nmw_A APC variant protein; AR 100.0 7.2E-30 2.5E-34 258.5 26.0 264 210-474 46-338 (354)
26 3nmw_A APC variant protein; AR 100.0 2.3E-28 8E-33 247.4 24.9 260 170-430 48-335 (354)
27 4hxt_A De novo protein OR329; 99.9 4.4E-25 1.5E-29 213.5 24.9 234 196-430 2-242 (252)
28 4db8_A Armadillo-repeat protei 99.9 6.2E-25 2.1E-29 212.9 24.4 236 153-389 11-251 (252)
29 4hxt_A De novo protein OR329; 99.9 1.3E-24 4.5E-29 210.1 25.7 234 155-389 3-241 (252)
30 4db8_A Armadillo-repeat protei 99.9 1E-24 3.4E-29 211.4 22.1 233 196-429 12-251 (252)
31 3opb_A SWI5-dependent HO expre 99.9 4.6E-23 1.6E-27 222.3 29.5 378 155-540 256-714 (778)
32 3opb_A SWI5-dependent HO expre 99.9 1.4E-23 4.8E-28 226.3 24.1 377 155-538 297-760 (778)
33 4db6_A Armadillo repeat protei 99.9 2.8E-21 9.7E-26 181.7 22.1 194 276-470 10-209 (210)
34 3tt9_A Plakophilin-2; cell adh 99.9 8.8E-22 3E-26 185.9 18.4 198 151-350 5-230 (233)
35 4db6_A Armadillo repeat protei 99.9 5E-21 1.7E-25 180.0 23.6 196 153-349 11-209 (210)
36 3tt9_A Plakophilin-2; cell adh 99.9 1.5E-21 5.1E-26 184.3 18.2 192 197-389 9-229 (233)
37 1xqr_A HSPBP1 protein; armadil 99.9 8.4E-20 2.9E-24 179.9 23.4 199 155-355 29-244 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 6.7E-20 2.3E-24 180.6 21.6 223 292-515 54-289 (296)
39 3grl_A General vesicular trans 99.7 4.1E-15 1.4E-19 156.5 30.8 319 152-474 19-398 (651)
40 3grl_A General vesicular trans 99.7 1.1E-13 3.6E-18 145.9 35.5 393 153-548 59-540 (651)
41 1b3u_A Protein (protein phosph 99.5 1.8E-13 6.1E-18 148.5 20.4 371 155-545 204-578 (588)
42 1oyz_A Hypothetical protein YI 99.5 1.1E-12 3.7E-17 128.7 23.6 255 192-508 19-277 (280)
43 1b3u_A Protein (protein phosph 99.5 6.9E-13 2.4E-17 143.8 23.2 367 154-542 164-536 (588)
44 1oyz_A Hypothetical protein YI 99.5 2.2E-12 7.6E-17 126.4 23.8 251 154-466 23-278 (280)
45 4fdd_A Transportin-1; heat rep 99.5 9.9E-14 3.4E-18 157.7 16.0 347 154-512 128-511 (852)
46 4fdd_A Transportin-1; heat rep 99.5 3E-13 1E-17 153.8 17.3 380 153-542 214-646 (852)
47 2vgl_B AP-2 complex subunit be 99.4 1.4E-11 4.8E-16 133.9 24.1 330 153-513 120-457 (591)
48 2vgl_B AP-2 complex subunit be 99.3 2E-11 6.7E-16 132.8 18.1 293 153-470 12-311 (591)
49 3ltm_A Alpha-REP4; protein eng 99.3 7.2E-11 2.5E-15 110.4 19.0 123 195-348 18-140 (211)
50 3ltj_A Alpharep-4; protein eng 99.3 1.1E-10 3.7E-15 108.3 16.6 182 196-428 14-197 (201)
51 1w63_A Adapter-related protein 99.2 1.7E-09 5.8E-14 118.0 27.2 288 154-469 70-413 (618)
52 3ltj_A Alpharep-4; protein eng 99.2 2.9E-10 9.8E-15 105.4 17.8 182 237-469 14-197 (201)
53 1w63_A Adapter-related protein 99.2 2.9E-09 9.8E-14 116.2 27.7 326 152-515 32-381 (618)
54 2bpt_A Importin beta-1 subunit 99.2 3.4E-10 1.2E-14 128.4 21.2 370 155-538 225-652 (861)
55 3ltm_A Alpha-REP4; protein eng 99.2 5.3E-10 1.8E-14 104.4 18.9 153 154-348 19-171 (211)
56 2bpt_A Importin beta-1 subunit 99.2 5.8E-10 2E-14 126.5 20.4 340 155-513 325-711 (861)
57 1qgr_A Protein (importin beta 99.1 2.4E-09 8.3E-14 121.6 20.5 347 154-512 128-536 (876)
58 1ibr_B P95, importin beta-1 su 99.1 3.2E-10 1.1E-14 118.9 12.0 347 156-513 37-437 (462)
59 2vgl_A Adaptor protein complex 99.1 1.7E-07 6E-12 101.9 33.4 356 153-549 34-429 (621)
60 1qgr_A Protein (importin beta 99.1 7.1E-09 2.4E-13 117.8 22.0 369 155-536 218-702 (876)
61 4gmo_A Putative uncharacterize 99.0 2.6E-09 8.8E-14 117.8 14.1 192 197-388 35-257 (684)
62 1u6g_C TIP120 protein, CAND1; 99.0 7.9E-09 2.7E-13 122.0 18.0 343 154-512 6-402 (1230)
63 1ibr_B P95, importin beta-1 su 99.0 7.9E-09 2.7E-13 108.2 16.0 272 154-430 128-438 (462)
64 2vgl_A Adaptor protein complex 98.9 9E-08 3.1E-12 104.1 23.0 324 154-512 74-432 (621)
65 4gmo_A Putative uncharacterize 98.9 6.2E-09 2.1E-13 114.8 13.6 191 238-428 35-257 (684)
66 1ho8_A Vacuolar ATP synthase s 98.8 7.6E-07 2.6E-11 90.8 24.4 313 154-470 77-476 (480)
67 1u6g_C TIP120 protein, CAND1; 98.7 7.4E-08 2.5E-12 113.7 15.1 340 153-512 47-462 (1230)
68 2iw3_A Elongation factor 3A; a 98.6 1.3E-05 4.5E-10 89.8 27.9 369 155-549 15-413 (986)
69 2qk2_A LP04448P; mini spindles 98.5 4E-07 1.4E-11 86.7 10.9 180 158-349 19-205 (242)
70 3b2a_A TON_1937, putative unch 98.5 3.1E-06 1.1E-10 77.2 15.3 182 155-350 34-219 (265)
71 4ady_A RPN2, 26S proteasome re 98.5 5.3E-05 1.8E-09 84.0 27.3 289 167-513 371-676 (963)
72 3tjz_B Coatomer subunit gamma; 98.5 1.2E-05 4.1E-10 80.2 19.8 303 167-508 40-348 (355)
73 4ady_A RPN2, 26S proteasome re 98.4 0.00014 4.9E-09 80.6 27.7 262 165-474 406-680 (963)
74 2db0_A 253AA long hypothetical 98.4 0.00013 4.6E-09 63.8 21.4 211 235-470 30-246 (253)
75 1te4_A Conserved protein MTH18 98.3 9.4E-08 3.2E-12 81.8 0.1 122 194-347 10-131 (131)
76 3tjz_B Coatomer subunit gamma; 98.2 3.4E-05 1.2E-09 76.9 16.0 274 155-466 69-349 (355)
77 1ho8_A Vacuolar ATP synthase s 98.2 0.00043 1.5E-08 70.7 23.5 312 194-511 75-474 (480)
78 2qk1_A Protein STU2; STU2P, XM 98.1 8.2E-06 2.8E-10 77.9 10.3 183 159-349 21-220 (249)
79 2db0_A 253AA long hypothetical 98.1 0.00034 1.2E-08 61.2 19.0 212 276-511 30-244 (253)
80 2qk2_A LP04448P; mini spindles 98.1 5.2E-06 1.8E-10 78.9 8.5 141 200-349 19-162 (242)
81 3b2a_A TON_1937, putative unch 98.1 4E-05 1.4E-09 70.0 12.9 182 278-471 33-219 (265)
82 1te4_A Conserved protein MTH18 98.0 4E-07 1.4E-11 77.9 -1.0 119 155-305 13-131 (131)
83 2qk1_A Protein STU2; STU2P, XM 98.0 2.8E-05 9.5E-10 74.2 10.1 183 283-469 21-219 (249)
84 3dad_A FH1/FH2 domain-containi 97.9 0.00065 2.2E-08 66.0 18.1 177 155-331 119-317 (339)
85 3dad_A FH1/FH2 domain-containi 97.8 0.00051 1.8E-08 66.7 15.6 175 282-458 122-324 (339)
86 2iw3_A Elongation factor 3A; a 97.6 0.0051 1.7E-07 69.1 22.7 288 201-511 19-322 (986)
87 1wa5_C Importin alpha RE-expor 97.2 0.043 1.5E-06 62.6 24.0 246 171-427 378-668 (960)
88 2of3_A ZYG-9; multifunctional 97.1 0.0086 2.9E-07 56.8 14.7 176 157-349 49-236 (266)
89 2fv2_A RCD1 required for cell 97.1 0.063 2.2E-06 49.8 19.8 211 335-549 16-263 (268)
90 1wa5_C Importin alpha RE-expor 96.9 0.036 1.2E-06 63.3 19.5 328 170-511 262-668 (960)
91 4ffb_C Protein STU2; tubulin f 96.8 0.016 5.4E-07 55.8 13.7 184 159-349 14-212 (278)
92 3oc3_A Helicase MOT1, MOT1; re 96.5 0.0056 1.9E-07 63.0 8.3 239 198-466 176-432 (800)
93 2fv2_A RCD1 required for cell 96.4 0.062 2.1E-06 49.9 14.0 171 174-347 76-266 (268)
94 2x19_B Importin-13; nuclear tr 96.4 0.26 8.8E-06 56.1 22.4 212 206-428 459-713 (963)
95 2x1g_F Cadmus; transport prote 96.3 0.12 4.2E-06 58.9 18.9 210 208-429 476-722 (971)
96 2x1g_F Cadmus; transport prote 96.1 1.6 5.6E-05 49.5 27.2 298 197-512 349-721 (971)
97 1lrv_A LRV, leucine-rich repea 95.9 0.0032 1.1E-07 59.3 2.6 165 198-466 76-242 (244)
98 3oc3_A Helicase MOT1, MOT1; re 95.8 0.032 1.1E-06 57.6 9.6 242 155-425 175-432 (800)
99 1upk_A MO25 protein; transfera 95.6 0.61 2.1E-05 45.2 17.3 243 232-512 73-334 (341)
100 2x19_B Importin-13; nuclear tr 95.4 0.66 2.3E-05 52.7 19.9 299 197-513 242-599 (963)
101 1upk_A MO25 protein; transfera 95.3 0.5 1.7E-05 45.8 15.6 221 313-535 72-311 (341)
102 3a6p_A Exportin-5; exportin-5, 95.0 1.8 6.1E-05 50.5 22.1 298 154-471 11-381 (1204)
103 4ffb_C Protein STU2; tubulin f 94.9 0.16 5.5E-06 48.6 11.1 181 283-471 14-213 (278)
104 3l9t_A Putative uncharacterize 94.9 0.84 2.9E-05 42.0 14.9 141 198-359 73-217 (240)
105 2f31_A Diaphanous protein homo 94.8 0.38 1.3E-05 44.7 13.0 137 413-549 67-223 (233)
106 3m1i_C Exportin-1; heat repeat 94.6 1.8 6.2E-05 49.7 20.8 294 165-470 206-569 (1049)
107 3eg5_B Protein diaphanous homo 94.5 0.8 2.7E-05 45.9 15.3 137 413-549 133-289 (383)
108 3ibv_A Exportin-T; karyopherin 94.4 0.29 9.9E-06 55.7 13.4 295 165-470 204-566 (980)
109 1lrv_A LRV, leucine-rich repea 94.4 0.029 9.9E-07 52.7 4.1 79 164-259 60-144 (244)
110 3ebb_A Phospholipase A2-activa 94.3 0.53 1.8E-05 45.6 13.0 164 198-362 105-276 (304)
111 3m1i_C Exportin-1; heat repeat 94.2 3.3 0.00011 47.5 21.8 217 155-389 17-263 (1049)
112 3u0r_A Apoptosis inhibitor 5; 93.6 5.3 0.00018 40.7 18.9 159 248-426 39-203 (507)
113 3ebb_A Phospholipase A2-activa 93.3 1.3 4.6E-05 42.7 13.8 173 364-536 105-287 (304)
114 3c2g_A SYS-1 protein; beta-cat 93.0 1.6 5.3E-05 42.3 13.2 114 257-372 263-377 (619)
115 2bnx_A Diaphanous protein homo 92.7 1.8 6.2E-05 43.4 14.3 137 413-549 71-227 (386)
116 3ibv_A Exportin-T; karyopherin 92.6 6.6 0.00023 44.6 20.4 286 167-469 21-360 (980)
117 2of3_A ZYG-9; multifunctional 92.1 3.6 0.00012 38.7 14.7 174 281-469 49-235 (266)
118 4hat_C Exportin-1; heat repeat 91.8 1.2 4E-05 51.0 12.9 135 208-350 465-619 (1023)
119 2f31_A Diaphanous protein homo 91.8 3.8 0.00013 37.8 14.3 148 310-458 35-216 (233)
120 3gjx_A Exportin-1; transport, 90.9 8.1 0.00028 44.2 18.5 218 155-389 29-275 (1073)
121 3l9t_A Putative uncharacterize 90.4 5.6 0.00019 36.5 13.5 139 156-317 72-218 (240)
122 4hat_C Exportin-1; heat repeat 89.8 3.6 0.00012 46.9 14.6 218 155-389 17-263 (1023)
123 3eg5_B Protein diaphanous homo 89.1 19 0.00066 35.8 20.5 172 159-332 71-277 (383)
124 1lsh_A Lipovitellin (LV-1N, LV 88.1 13 0.00045 42.5 17.8 162 281-470 394-576 (1056)
125 3qml_C Protein SLS1, nucleotid 87.0 4.4 0.00015 38.7 10.6 146 155-306 23-188 (315)
126 3c2g_A SYS-1 protein; beta-cat 85.8 8.7 0.0003 37.3 11.9 126 177-304 265-400 (619)
127 1lsh_A Lipovitellin (LV-1N, LV 84.2 63 0.0022 36.8 22.0 196 198-430 358-577 (1056)
128 2bnx_A Diaphanous protein homo 84.1 36 0.0012 33.8 20.1 159 173-332 24-216 (386)
129 3u0r_A Apoptosis inhibitor 5; 84.0 40 0.0014 34.3 19.6 122 164-303 38-159 (507)
130 3gjx_A Exportin-1; transport, 83.1 10 0.00035 43.3 13.4 211 198-429 30-275 (1073)
131 3a6p_A Exportin-5; exportin-5, 76.6 1.2E+02 0.004 35.2 24.1 277 209-514 26-381 (1204)
132 3ldz_A STAM-1, signal transduc 74.1 7.4 0.00025 32.6 6.6 69 401-469 43-113 (140)
133 1x5b_A Signal transducing adap 72.4 9.9 0.00034 32.8 7.2 69 401-469 53-124 (163)
134 3gs3_A Symplekin, LD45768P; he 71.6 65 0.0022 29.9 13.2 105 151-264 12-117 (257)
135 1mhq_A ADP-ribosylation factor 71.4 9.8 0.00033 32.2 6.8 69 401-469 39-115 (148)
136 3g2s_A C-terminal fragment of 70.7 12 0.00041 31.7 7.2 69 401-469 49-125 (149)
137 1x5b_A Signal transducing adap 69.4 14 0.00049 31.8 7.5 73 153-225 51-125 (163)
138 1mhq_A ADP-ribosylation factor 69.2 19 0.00064 30.5 8.1 74 153-226 37-117 (148)
139 3ldz_A STAM-1, signal transduc 67.3 15 0.00053 30.6 7.1 73 153-225 41-114 (140)
140 1juq_A ADP-ribosylation factor 67.0 9.5 0.00032 33.2 5.9 69 401-469 51-127 (171)
141 1juq_A ADP-ribosylation factor 63.9 19 0.00065 31.3 7.3 74 153-226 49-129 (171)
142 3qml_C Protein SLS1, nucleotid 59.2 73 0.0025 30.3 10.7 133 210-348 42-188 (315)
143 3g2s_A C-terminal fragment of 57.6 34 0.0012 28.9 7.5 74 153-226 47-127 (149)
144 3zyq_A Hepatocyte growth facto 54.0 18 0.00062 33.0 5.6 69 401-469 46-117 (226)
145 3gae_A Protein DOA1; UFD3, CDC 51.6 15 0.0005 34.3 4.7 132 213-353 71-221 (253)
146 3pst_A Protein DOA1; protein d 48.1 47 0.0016 33.3 7.9 133 213-355 243-395 (425)
147 3zyq_A Hepatocyte growth facto 48.1 90 0.0031 28.2 9.4 69 281-349 48-118 (226)
148 1dvp_A HRS, hepatocyte growth 45.2 30 0.001 31.3 5.7 69 401-469 43-114 (220)
149 3l3f_X Protein DOA1, DOA1/UFD3 45.0 39 0.0013 33.1 6.7 133 213-355 180-332 (362)
150 1elk_A Target of MYB1; superhe 44.1 58 0.002 27.6 6.9 69 401-469 54-129 (157)
151 3o2t_A Symplekin; heat repeat, 43.2 2.1E+02 0.0073 28.1 11.8 105 153-264 62-181 (386)
152 1dvp_A HRS, hepatocyte growth 42.2 50 0.0017 29.8 6.7 73 153-225 41-115 (220)
153 3o2t_A Symplekin; heat repeat, 40.9 2.7E+02 0.0094 27.4 15.0 103 153-264 24-127 (386)
154 1elk_A Target of MYB1; superhe 38.5 91 0.0031 26.4 7.3 73 153-225 52-130 (157)
155 3gs3_A Symplekin, LD45768P; he 34.0 2.8E+02 0.0097 25.5 11.7 104 154-264 53-171 (257)
156 1vdy_A Hypothetical protein (R 33.0 82 0.0028 26.2 5.8 70 401-470 50-130 (140)
157 3gae_A Protein DOA1; UFD3, CDC 22.9 82 0.0028 29.1 4.6 97 367-470 61-169 (253)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.6e-36 Score=322.53 Aligned_cols=393 Identities=16% Similarity=0.203 Sum_probs=336.7
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc-
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS- 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~- 228 (560)
....+++++..+++++++.+.+|+..++.+++.. ......+++.|++|+|+++|+.+ ++.+|..|+++|.+|+...+
T Consensus 55 ~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 55 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 3456999999999999999999999999987532 23456788999999999999865 58999999999999987654
Q ss_pred hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCC-----hHHHHHHHHHH
Q 008585 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGD-----SVSQAAAACTL 302 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL 302 (560)
.+..+++.|++|.|+++|++++..+++.|+++|++|+.+ ++.+..+.+.|++++|+.++.+.+ ...++.++++|
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 888999999999999999999999999999999999986 677888999999999999998654 35678999999
Q ss_pred HHhcCCchhHH-HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHH
Q 008585 303 KNISAVPEVRQ-MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES 379 (560)
Q Consensus 303 ~nLa~~~~~~~-~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~ 379 (560)
+|++.+..... .....++++.|+.++.++++ +++..++++|.+|+.+++...+.+.+.|+++.|+.++.+ +.++..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 99998654333 33447899999999999887 899999999999999888888888899999999999977 567899
Q ss_pred HHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHH
Q 008585 380 AVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNS 456 (560)
Q Consensus 380 a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~ 456 (560)
++++|+|++. +.....+.+.|+++.|+.+|.++++.++..|+++|+|++.+ ++.+..+.+.|+++.|+.++.+++..
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 373 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHH
Confidence 9999999987 35667788999999999999999999999999999999864 78888999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-------ChhhHHHHHHcChhH
Q 008585 457 VREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-------SKKCKKLMISYGAIG 528 (560)
Q Consensus 457 v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-------~~~~r~~i~~~g~i~ 528 (560)
+|..|+++|++++.+ .......+.+.++++.|+.+|++.+. .+...++.+|.++.. .+..+..|.+.|+++
T Consensus 374 v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~-~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~ 452 (510)
T 3ul1_B 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452 (510)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHH
Confidence 999999999999953 33344455578999999999998754 467788888887752 335677888999999
Q ss_pred HHHHhhccCchhHHHHHH
Q 008585 529 YLKKLSEMDIPGARKLLE 546 (560)
Q Consensus 529 ~L~~L~~~~~~~akkl~~ 546 (560)
.|..|...+++...+.+.
T Consensus 453 ~ie~Lq~~~n~~i~~~A~ 470 (510)
T 3ul1_B 453 KIEALQRHENESVYKASL 470 (510)
T ss_dssp HHHHGGGCSSHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 999999888876544433
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3e-35 Score=317.00 Aligned_cols=394 Identities=16% Similarity=0.205 Sum_probs=338.2
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc-
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS- 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~- 228 (560)
....++.++..+++++++.+..|+..+..+++.. ......+++.|++|.|+++|+.+ ++.++..|+++|.+++...+
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 3456899999999999999999999999987533 23456788999999999999754 59999999999999998765
Q ss_pred hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCC-----hHHHHHHHHHH
Q 008585 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGD-----SVSQAAAACTL 302 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL 302 (560)
.+..+++.|++|.|+.+|.+++..+++.|+++|++|+.+ ++++..+.+.|++++|+.++...+ ..+...++++|
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999885 778889999999999999998644 35678999999
Q ss_pred HHhcCCchhH-HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHH
Q 008585 303 KNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES 379 (560)
Q Consensus 303 ~nLa~~~~~~-~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~ 379 (560)
+|++.+.... ......+++|.|+.++.++++ +++..++++|.+++.+++...+.+.+.|+++.|+.++.+ +.++..
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 312 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence 9999865433 333447899999999999987 899999999999999888888888999999999999977 457899
Q ss_pred HHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHH
Q 008585 380 AVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNS 456 (560)
Q Consensus 380 a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~ 456 (560)
++.+|+|++. +.....+.+.|+++.|+.+|.++++.++..|+++|+|++.+ ++....+.+.|++|.|+.++.+++..
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 9999999997 35667788999999999999999999999999999999964 78888899999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC-------ChhhHHHHHHcChhH
Q 008585 457 VREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP-------SKKCKKLMISYGAIG 528 (560)
Q Consensus 457 v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~-------~~~~r~~i~~~g~i~ 528 (560)
++..|+++|++++.+ .......+.+.++++.|+.+|++.+. .+...++.+|.++.. .+..+..|.++|+++
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~-~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~ 471 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 471 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHH
Confidence 999999999999853 33444455578999999999998754 466788888887752 335667888999999
Q ss_pred HHHHhhccCchhHHHHHHH
Q 008585 529 YLKKLSEMDIPGARKLLER 547 (560)
Q Consensus 529 ~L~~L~~~~~~~akkl~~~ 547 (560)
.|..|...+++...+.+..
T Consensus 472 ~ie~Lq~~~n~~i~~~A~~ 490 (529)
T 3tpo_A 472 KIEALQRHENESVYKASLN 490 (529)
T ss_dssp HHTGGGGCSSHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 9999999888765554433
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.5e-36 Score=321.42 Aligned_cols=373 Identities=19% Similarity=0.181 Sum_probs=314.0
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC--CchH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES--GSCE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~--~~~~ 230 (560)
...++.++..|++++++.+..|+..|..++..+++++..+++.|+|++|+++|+++++++|+.|+++|.+|+.. ++++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 34599999999999999999999999999998999999999999999999999999999999999999999984 5699
Q ss_pred HHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc------------------cCC
Q 008585 231 NWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ------------------TGD 291 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~------------------~~~ 291 (560)
..+++.|+|++|+++|++ .+..+++.++.+|++|+.+++++..+++ ++++.|+.++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999998 5788999999999999999999999986 57999999872 135
Q ss_pred hHHHHHHHHHHHHhcCCc-hhHHHHHh-cCcHHHHHHHhhc------CCchhHHHHHHHHHHHHccCChh-------HHH
Q 008585 292 SVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDC------GILLGSKEYAAECLQNLTASNEN-------LRR 356 (560)
Q Consensus 292 ~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~v~~L~~lL~~------~~~~~v~~~a~~~L~~La~~~~~-------~~~ 356 (560)
+.++..|+++|+||+.+. ++++.+.+ .|+++.|+.++.+ .+. ..+++|+++|.||+...+. ..+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~-~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDS-KLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC-HHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH-HHHHHHHHHHHHhhccccccccchhhhhh
Confidence 789999999999999755 66999998 5777899999975 333 7899999999999975210 000
Q ss_pred H---------HHhC---------CCHHHHHHhcc---CCccHHHHHHHHHHhhccc------cHHHHHhCCcHHHHHHHH
Q 008585 357 S---------VVSE---------GGIRSLLAYLD---GPLPQESAVGALRNLVGSV------SQEVLISLGFFPRLVHVL 409 (560)
Q Consensus 357 ~---------i~~~---------g~l~~L~~ll~---~~~~~~~a~~~L~nla~~~------~~~~l~~~~~i~~Lv~lL 409 (560)
. .... ++++.|+.++. ++.+++.|+++|.||+... .+..+.+.++++.|+.+|
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 0 1122 33566778884 2678999999999998721 233445678899999999
Q ss_pred hcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC--------CHHHHHHHHHHHHHhcCCChhhHHHhhh
Q 008585 410 KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK--------PNSVREVAAQAISSLVTLPQNCREVKRD 481 (560)
Q Consensus 410 ~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~--------~~~v~~~A~~aL~~L~~~~~~~~~~~~~ 481 (560)
.+++..+++.|+++|+||+.++.++..| ..|+++.|+++|.+. +.+++..|+.+|.+|+...+.....+.+
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~ 443 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999988888766 678999999999865 4678899999999998654444445557
Q ss_pred CCChHHHHhccCCC-CchhhHHHHHHHHHHhCCChhhHHHHHHcChhH
Q 008585 482 DKSVPNLVQLLDPS-PQNTAKKYAVACLASLSPSKKCKKLMISYGAIG 528 (560)
Q Consensus 482 ~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~ 528 (560)
.++++.|+++|.++ ..+.++++|..+|.+|+.+++.|+.+.+.|+-+
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~ 491 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKK 491 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCG
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCH
Confidence 89999999999986 345688899999999999999999999987654
No 4
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.7e-34 Score=311.33 Aligned_cols=394 Identities=14% Similarity=0.170 Sum_probs=343.1
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCC-c
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESG-S 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~-~ 228 (560)
....++.++..|++++++.+..|+..|..++...+ .....++..|+++.|+++|++++ +.++..|+++|.+++... +
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 34569999999999999999999999999987554 56677888999999999999987 999999999999999975 5
Q ss_pred hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHh-ccCChHHHHHHHHHHHHhc
Q 008585 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNIS 306 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa 306 (560)
.+..+++.|+++.|+.+|.++++.+++.|+++|.+|+.+ ++++..+...|+++.|+.++ .+.++.++..++++|++|+
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999876 66788899999999999999 5688999999999999999
Q ss_pred CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585 307 AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL 384 (560)
Q Consensus 307 ~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L 384 (560)
............++++.|+.++.+++. .++..++++|++++..++...+.+++.|+++.|+.++.+ +.++..|+++|
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 865444455568999999999998886 899999999999999888777888999999999999977 46899999999
Q ss_pred HHhhc--cccHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHH
Q 008585 385 RNLVG--SVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREV 460 (560)
Q Consensus 385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~ 460 (560)
+|++. +.....+.+.|+++.|+.+|.++ ++.++..|+++|+||+.. ++....+.+.|+++.|++++.+++..++..
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 99998 34566778899999999999998 999999999999999964 777888889999999999999999999999
Q ss_pred HHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh------------hhHHHHHHcChh
Q 008585 461 AAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK------------KCKKLMISYGAI 527 (560)
Q Consensus 461 A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~------------~~r~~i~~~g~i 527 (560)
|+++|.+++.+ .+.....+.+.++++.|+.+|.+.+ ..++..++.+|.++.... .....+.+.|++
T Consensus 391 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 469 (528)
T 4b8j_A 391 AAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD-IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGL 469 (528)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcH
Confidence 99999999954 3444445556899999999999864 457889999999887533 357888999999
Q ss_pred HHHHHhhccCchhHHHHHHH
Q 008585 528 GYLKKLSEMDIPGARKLLER 547 (560)
Q Consensus 528 ~~L~~L~~~~~~~akkl~~~ 547 (560)
+.|..|.+.++++.++.+..
T Consensus 470 ~~l~~L~~~~~~~v~~~a~~ 489 (528)
T 4b8j_A 470 EKIENLQSHDNNEIYEKAVK 489 (528)
T ss_dssp HHHHHGGGCSSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 99999998888765555444
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.3e-35 Score=311.64 Aligned_cols=362 Identities=17% Similarity=0.181 Sum_probs=307.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWL 233 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l 233 (560)
.++.++..|++++++.+..|+..|.+++.+++.++..+++.|+++.|+++|+++++++++.|+++|.+|+.+ ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 588999999999999999999999999987877777889999999999999999999999999999999987 5699999
Q ss_pred HhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc--------c--------CChHHHH
Q 008585 234 VSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ--------T--------GDSVSQA 296 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~--------~--------~~~~~~~ 296 (560)
++.|+++.|+++|+ ++++.+++.++++|++|+.+++++..+++ |+++.|+.++. + .++.++.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999889999999 99999999993 2 2456777
Q ss_pred HHHHHHHHhcCCchhHHHHHhc-CcHHHHHHHhhc------CCchhHHHHHHHHHHHHccCCh-----------------
Q 008585 297 AAACTLKNISAVPEVRQMLAEE-GIVSVMIKLLDC------GILLGSKEYAAECLQNLTASNE----------------- 352 (560)
Q Consensus 297 ~a~~aL~nLa~~~~~~~~i~e~-g~v~~L~~lL~~------~~~~~v~~~a~~~L~~La~~~~----------------- 352 (560)
.|+++|+||+.+++++..+.+. |+++.|+.++.+ .+. .++++++.+|.|++...+
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~-~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD-KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC-TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCch-HHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 9999999999989999999997 999999999986 233 689999999999974210
Q ss_pred ---------------------------------hHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHHHhhc-ccc---
Q 008585 353 ---------------------------------NLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SVS--- 392 (560)
Q Consensus 353 ---------------------------------~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~nla~-~~~--- 392 (560)
...+.+.+.|+++.|+.+|.+ +.+++.|+++|.|++. ...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 011123345567888888853 5789999999999997 221
Q ss_pred ---HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCC------HHHHHHHHH
Q 008585 393 ---QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP------NSVREVAAQ 463 (560)
Q Consensus 393 ---~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~------~~v~~~A~~ 463 (560)
+..+.+.|+++.|+++|.+++..++..|+++|+|++.+++.+..+. .|++++|++++...+ +++...++.
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~ 399 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACY 399 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence 2233468999999999999999999999999999999888877665 478999999998764 358889999
Q ss_pred HHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH
Q 008585 464 AISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK 519 (560)
Q Consensus 464 aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~ 519 (560)
+|.++..+.+.....+.+.++++.|++++.++..+.+++.|..+|.++..+++.|.
T Consensus 400 ~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 99999876655566666789999999999987344688899999999998887653
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=9.4e-35 Score=319.14 Aligned_cols=382 Identities=17% Similarity=0.199 Sum_probs=324.4
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCC----HHHHHHhhcCC--CHHHHHHHHHHHHHHhcC
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSN----IAALVQLLTAT--SPRIREKTVTVICSLAES 226 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~----v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~ 226 (560)
..++.|...+++++...+..|+..|.++..... .+....++.|. ++.++++|.++ ++++++.|+++|.+|+.+
T Consensus 330 ~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~ 409 (810)
T 3now_A 330 QGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD 409 (810)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 346778888888998899999999999975321 12223334454 55677888887 799999999999999999
Q ss_pred CchHHHHH-hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh------------------------------hH---H
Q 008585 227 GSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE------------------------------MA---R 272 (560)
Q Consensus 227 ~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~------------------------------~~---~ 272 (560)
++.+..++ +.|+++.|+.+|++++..++..++++|.||+..++ ++ .
T Consensus 410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~ 489 (810)
T 3now_A 410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT 489 (810)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence 99888877 47999999999999999999999999999987532 12 5
Q ss_pred HHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC-C
Q 008585 273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS-N 351 (560)
Q Consensus 273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~-~ 351 (560)
.+++.|+++.|+.+++++++.++..|+++|.|++.+++++..+++.|+++.|+.++.++++ ..++.|+++|.+|+.+ +
T Consensus 490 ~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~-~~k~~Aa~AL~nL~~~~~ 568 (810)
T 3now_A 490 VLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE-KGKRHATQALARIGITIN 568 (810)
T ss_dssp HHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH-HHHHHHHHHHHHHhcCCC
Confidence 7889999999999999999999999999999999999999999999999999999999987 8999999999999874 3
Q ss_pred hhHHH-HHHhCCCHHHHHHhccCC-c--cHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 008585 352 ENLRR-SVVSEGGIRSLLAYLDGP-L--PQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC 425 (560)
Q Consensus 352 ~~~~~-~i~~~g~l~~L~~ll~~~-~--~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (560)
+...- .....|++++|+.+|.++ . .+..|+++|.||+. +..+..+++.|+++.|+.+|.++++.+|+.|+++|+
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~ 648 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLC 648 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32210 001135899999999763 3 34689999999998 356788899999999999999999999999999999
Q ss_pred HHhCChhHHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CChhhHHHhhhCCChHHHHhccCCCCchhhHHH
Q 008585 426 RVCTSAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY 503 (560)
Q Consensus 426 ~La~~~~~~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~ 503 (560)
||+.+++.+..+.+ .|.++.|+.++.+.+..+|..|+++|++|+. ++.+.+.++.+.++++.|+++|.+++ ..++..
T Consensus 649 NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d-~~vq~~ 727 (810)
T 3now_A 649 NLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS-PAVQHR 727 (810)
T ss_dssp HHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS-HHHHHH
T ss_pred HHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC-HHHHHH
Confidence 99999888888886 6899999999999999999999999999997 56667777765799999999999864 457889
Q ss_pred HHHHHHHhCC-ChhhHHHHHHcChhHHHHHhhccC
Q 008585 504 AVACLASLSP-SKKCKKLMISYGAIGYLKKLSEMD 537 (560)
Q Consensus 504 a~~~L~~L~~-~~~~r~~i~~~g~i~~L~~L~~~~ 537 (560)
++.++.|++. +++.++.+++.|+++.|.+|++..
T Consensus 728 A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 728 GIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence 9999998875 568999999999999999998655
No 7
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=7.2e-33 Score=298.78 Aligned_cols=391 Identities=16% Similarity=0.195 Sum_probs=339.6
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCc-
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS- 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~- 228 (560)
....++.++..|++++++.+..|+..|..++... ..+...+++.|+++.|+++|+++ ++.++..|+++|.+++...+
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4456999999999999999999999999997643 34456677889999999999997 89999999999999998764
Q ss_pred hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
.+..+++.|+++.|+++|+++++.+++.|+++|.+|+.+ ++.+..+...|+++.|+.++.+.++.++..++++|++|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 788888999999999999999999999999999999886 6778888899999999999999999999999999999997
Q ss_pred Cc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585 308 VP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL 384 (560)
Q Consensus 308 ~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L 384 (560)
+. .........++++.|+.++.++++ .++..++++|.+|+..++...+.+++.|+++.|+.++.+ +.++..|+++|
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 64 445566668999999999998886 899999999999999888778888999999999999976 45789999999
Q ss_pred HHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585 385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (560)
Q Consensus 385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A 461 (560)
++++. +.....+.+.|+++.|+.+|.++++.++..|+++|++++. +++..+.+.+.|+++.|++++.++++.++..|
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99997 3455667788999999999999999999999999999996 47777888899999999999999999999999
Q ss_pred HHHHHHhcCC--C--hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh------------hhHHHHHHcC
Q 008585 462 AQAISSLVTL--P--QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK------------KCKKLMISYG 525 (560)
Q Consensus 462 ~~aL~~L~~~--~--~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~------------~~r~~i~~~g 525 (560)
+++|++++.+ + .....++ +.++++.|+.++.+.+ ..++..++.+|.++.... .....+.+.|
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~-~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIAD-NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence 9999999853 3 4555555 6789999999999864 457889999998887532 2456788999
Q ss_pred hhHHHHHhhccCchhHHHHH
Q 008585 526 AIGYLKKLSEMDIPGARKLL 545 (560)
Q Consensus 526 ~i~~L~~L~~~~~~~akkl~ 545 (560)
+++.|..|....+++.++.+
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a 501 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKA 501 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHH
Confidence 99999999988887764433
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.2e-33 Score=300.74 Aligned_cols=370 Identities=16% Similarity=0.176 Sum_probs=297.1
Q ss_pred HHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCchHHHHHhCCCHHHHHHhhhcCCH
Q 008585 173 KALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE-SGSCENWLVSEGVLPPLIRLVESGST 251 (560)
Q Consensus 173 ~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~-~~~~~~~l~~~g~i~~Lv~lL~~~~~ 251 (560)
.++..|-.+.++++.. .-...+.++.|+++|.++++++|..|+++|.+++. +++++..+++.|+||+|+++|++++.
T Consensus 27 ~~~~~~~~~~~~~~~~--~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~ 104 (584)
T 3l6x_A 27 GSLASLDSLRKGGPPP--PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK 104 (584)
T ss_dssp -------------CCC--CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred chHHHHHHHHhcCCCC--CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH
Confidence 4455555555432311 12356789999999999999999999999999997 45699999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh
Q 008585 252 VGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL 328 (560)
Q Consensus 252 ~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL 328 (560)
.+++.|+++|.+|+. +++++..+++.|+|+.|+.+|++ .++.++..++++|+||+.+++++..|++ ++++.|++++
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL 183 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEV 183 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHH
Confidence 999999999999997 48999999999999999999997 6788999999999999999999999996 5799999987
Q ss_pred h-----------------cCCchhHHHHHHHHHHHHccCChhHHHHHHhCCC-HHHHHHhccC--------CccHHHHHH
Q 008585 329 D-----------------CGILLGSKEYAAECLQNLTASNENLRRSVVSEGG-IRSLLAYLDG--------PLPQESAVG 382 (560)
Q Consensus 329 ~-----------------~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~-l~~L~~ll~~--------~~~~~~a~~ 382 (560)
. +.++..++++|.++|.||+..+++.|+.+.+.+| ++.|+.++.+ ...+++|++
T Consensus 184 ~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~ 263 (584)
T 3l6x_A 184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC 263 (584)
T ss_dssp HHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred hcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence 2 1112489999999999999988888999998655 5799999852 357899999
Q ss_pred HHHHhhcc---cc------------------------HHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCC----
Q 008585 383 ALRNLVGS---VS------------------------QEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTS---- 430 (560)
Q Consensus 383 ~L~nla~~---~~------------------------~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~---- 430 (560)
+|+||+.. +. .+.+...++++.|+.+|+. .++.+++.|+++|.||+.+
T Consensus 264 aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~ 343 (584)
T 3l6x_A 264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY 343 (584)
T ss_dssp HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH
T ss_pred HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc
Confidence 99999972 10 0111223456788999964 6799999999999999854
Q ss_pred -hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCC-------chhhHH
Q 008585 431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSP-------QNTAKK 502 (560)
Q Consensus 431 -~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-------~~~~~~ 502 (560)
...+..+.+.|++|.|++++.+++..++..|+++|.+|+.++.++..+ ..++++.|+++|.++. .+.+..
T Consensus 344 ~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I--~~g~ip~LV~LL~~~~~~~~~~~s~~v~~ 421 (584)
T 3l6x_A 344 GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421 (584)
T ss_dssp HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH--HHHHHHHHHHTSSSSSCSGGGTCCHHHHH
T ss_pred cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH--HhCCHHHHHHHhcCCcccccccchHHHHH
Confidence 234556667789999999999999999999999999999888876544 4588999999998763 234677
Q ss_pred HHHHHHHHhC-CChhhHHHHHHcChhHHHHHhhccC--chhHHHHHHH
Q 008585 503 YAVACLASLS-PSKKCKKLMISYGAIGYLKKLSEMD--IPGARKLLER 547 (560)
Q Consensus 503 ~a~~~L~~L~-~~~~~r~~i~~~g~i~~L~~L~~~~--~~~akkl~~~ 547 (560)
.++.+|.+|+ .++.+++.|.+.|+++.|..|++.. .+.++|.+..
T Consensus 422 ~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 422 SILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence 8888998885 6789999999999999999999886 5555555443
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-34 Score=315.02 Aligned_cols=360 Identities=18% Similarity=0.173 Sum_probs=308.3
Q ss_pred hhchHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChHHHHHHh-hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 008585 152 THGNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~ 228 (560)
....++.++..|.++ +.+.+..|+..|..++.+ +..+..++ +.|+++.|+++|+++++.++..|+++|+||+...+
T Consensus 375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 344577788888877 889999999999999874 44555555 56899999999999999999999999999998531
Q ss_pred ------------------------------hH---HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585 229 ------------------------------CE---NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275 (560)
Q Consensus 229 ------------------------------~~---~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~ 275 (560)
.+ +.+++.|++|.|+++|+++++.+++.|+|+|.+|+.+++++..++
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv 533 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVV 533 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12 678899999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH---HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML---AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (560)
Q Consensus 276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i---~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~ 352 (560)
++|++++|+.+++++++..+..|+++|.|++.+.+....+ ...|+++.|+.+|.++.....+..|+++|.||+..++
T Consensus 534 ~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 534 QEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613 (810)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999999999998532222111 1135999999999866442446789999999999988
Q ss_pred hHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLIS-LGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 353 ~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~-~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
.+++.+++.|+++.|+.++.+ +.++..|+++|+|++. ++.+..+.+ .|.++.|+.++.+.+..+|..|+++|++++
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt 693 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999965 6789999999999998 556666665 689999999999999999999999999999
Q ss_pred C-ChhHHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCC--CchhhHHHH
Q 008585 429 T-SAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS--PQNTAKKYA 504 (560)
Q Consensus 429 ~-~~~~~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~~~~a 504 (560)
. +++..+.+.+ .|+++.|++++.+++.+++..|+++|.+++.+.......+.+.++++.|..++..+ ....+.+.+
T Consensus 694 ~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A 773 (810)
T 3now_A 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773 (810)
T ss_dssp HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence 7 6888888888 89999999999999999999999999999976665666777889999999999765 244577788
Q ss_pred HHHHHHhC
Q 008585 505 VACLASLS 512 (560)
Q Consensus 505 ~~~L~~L~ 512 (560)
+.+|.++.
T Consensus 774 l~aL~~ll 781 (810)
T 3now_A 774 TQCLAAAE 781 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887774
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.8e-33 Score=293.86 Aligned_cols=348 Identities=19% Similarity=0.201 Sum_probs=294.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHH
Q 008585 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAI 274 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l 274 (560)
.++.|+++|+++++++|..|+++|.+++.+++ .+..+++.|+++.|+++|+++++.++..|+++|.+|+.+ ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999997665 677999999999999999999999999999999999986 9999999
Q ss_pred HhCCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh--------cCC-------chhHHH
Q 008585 275 VGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD--------CGI-------LLGSKE 338 (560)
Q Consensus 275 ~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~--------~~~-------~~~v~~ 338 (560)
++.|+++.|+++|+ ++++.++..++++|+||+.+++++..+++ |+++.|++++. ++. +..+..
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999998999999999 99999999993 221 235667
Q ss_pred HHHHHHHHHccCChhHHHHHHhC-CCHHHHHHhccC--------CccHHHHHHHHHHhhcc-------------------
Q 008585 339 YAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVGALRNLVGS------------------- 390 (560)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~ll~~--------~~~~~~a~~~L~nla~~------------------- 390 (560)
+|+++|.||+.+ +.+++.+.+. |+++.|+.++.+ ....+.++.+|+|++..
T Consensus 162 ~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 162 NATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 999999999987 7888889887 999999999963 46788999999999730
Q ss_pred ---------------------------------ccHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhCCh-----
Q 008585 391 ---------------------------------VSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTSA----- 431 (560)
Q Consensus 391 ---------------------------------~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~La~~~----- 431 (560)
...+.+.+.++++.|+.+|.+. ++.+++.|+++|+||+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0112234456788999999864 6999999999999999642
Q ss_pred hH-HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCc-----hhhHHHHH
Q 008585 432 EM-KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ-----NTAKKYAV 505 (560)
Q Consensus 432 ~~-~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~-----~~~~~~a~ 505 (560)
.. +..+.+.|++|.|++++.+++.+++..|+++|.+|+.++.+.. .+. .++++.|+++|..+++ +.+...++
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~-~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR-VMG-NQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHH-HHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHH-HHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 23 3344468999999999999999999999999999998776654 443 3689999999998743 24666888
Q ss_pred HHHHHhC-CChhhHHHHHHcChhHHHHHhhccC-chhHHHHHHHH
Q 008585 506 ACLASLS-PSKKCKKLMISYGAIGYLKKLSEMD-IPGARKLLERL 548 (560)
Q Consensus 506 ~~L~~L~-~~~~~r~~i~~~g~i~~L~~L~~~~-~~~akkl~~~l 548 (560)
.++.++. .++..+..+.+.|+++.|..|...+ .+.++|.+-.+
T Consensus 399 ~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~ 443 (457)
T 1xm9_A 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443 (457)
T ss_dssp HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 8888875 4668899999999999999999999 77777655444
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.3e-32 Score=293.29 Aligned_cols=359 Identities=19% Similarity=0.239 Sum_probs=313.4
Q ss_pred hchHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585 153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (560)
...|+.|+..|+. .+++.+..|+.+|.+++.+++++...+++.|+++.|+.+|+++++++++.|+++|++|+.+.+ ++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 4568999999964 558899999999999999999999999999999999999999999999999999999998765 89
Q ss_pred HHHHhCCCHHHHHHhhhcCC-----HHHHHHHHHHHHHhhCChhhHH-HHHhCCChHHHHHHhccCChHHHHHHHHHHHH
Q 008585 231 NWLVSEGVLPPLIRLVESGS-----TVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKN 304 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~La~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 304 (560)
..+.+.|++++|+.+|...+ ......++++|.+++.+.+... .....++++.|+.++.+++++++..++++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999998653 4567889999999988754433 33346788999999999999999999999999
Q ss_pred hcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHH
Q 008585 305 ISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAV 381 (560)
Q Consensus 305 La~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~ 381 (560)
++.++ +....+.+.|+++.|+.++.+++. .++..++.+|+|++.+++..+..+++.|+++.|+.++.+ +.++..|+
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~ 356 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 356 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcCCCh-hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence 99765 566777889999999999999886 899999999999999999999999999999999999987 56789999
Q ss_pred HHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHccCCHHH
Q 008585 382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSV 457 (560)
Q Consensus 382 ~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s~~~~v 457 (560)
++|+|++. ......+.+.|+++.|+.+|.+++..++..|+++|+|++. +++....+.+.|++++|++++.+.++.+
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i 436 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 436 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHH
Confidence 99999998 3556778899999999999999999999999999999984 4788889999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585 458 REVAAQAISSLVT------LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (560)
Q Consensus 458 ~~~A~~aL~~L~~------~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 513 (560)
+..++.+|.+|.. +......++.+.+++..+-.+..+.+ +.+.+.|..++-..-.
T Consensus 437 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n-~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 437 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN-ESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSS-HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCC
Confidence 9999999999872 22334556778899999888877654 4578888888865543
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.7e-32 Score=293.93 Aligned_cols=359 Identities=18% Similarity=0.237 Sum_probs=312.8
Q ss_pred hchHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585 153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (560)
...|+.|+..|+. ++++.+.+|+.+|.+++.++++++..+++.|+++.|+++|+++++++++.|+++|++|+.+.+ ++
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 3468999999974 568899999999999999999999999999999999999999999999999999999999865 89
Q ss_pred HHHHhCCCHHHHHHhhhcCC-----HHHHHHHHHHHHHhhCChhhHH-HHHhCCChHHHHHHhccCChHHHHHHHHHHHH
Q 008585 231 NWLVSEGVLPPLIRLVESGS-----TVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKN 304 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~La~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n 304 (560)
..+.+.|++++|+.+|...+ ...+..++++|.+++.+..... .....++++.|+.++.+++++++..++++|++
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999998753 4567889999999998754433 33346788999999999999999999999999
Q ss_pred hcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHH
Q 008585 305 ISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAV 381 (560)
Q Consensus 305 La~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~ 381 (560)
|+.++ +....+.+.|+++.|+.++.+++. .++..++++|+|++..++..+..+++.|+++.|+.++.+ +.++..|+
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCCh-hhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 99865 556677789999999999999886 899999999999999999999999999999999999987 46799999
Q ss_pred HHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHccCCHHH
Q 008585 382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSV 457 (560)
Q Consensus 382 ~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s~~~~v 457 (560)
++|+|++. ......+.+.|+++.|+.++.+++..++..|+++|+|++. +++....+.+.|++++|++++.++++.+
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i 417 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 99999998 4566778899999999999999999999999999999985 4788889999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585 458 REVAAQAISSLVT------LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (560)
Q Consensus 458 ~~~A~~aL~~L~~------~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 513 (560)
+..++++|.+|.. .......++.+.+++..+-.+..+.+ +.+.+.+..++-....
T Consensus 418 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n-~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN-ESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCC
Confidence 9999999999872 12234556778899998888766654 4578889998876654
No 13
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.8e-32 Score=293.77 Aligned_cols=386 Identities=21% Similarity=0.212 Sum_probs=336.4
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENW 232 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~ 232 (560)
..++.++..|++++++.+..|+..|.+++.+++..+..+.+.|+++.|+++|+++++.++..++.+|.+++... +++..
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 46889999999999999999999999999988778888888899999999999999999999999999999864 58889
Q ss_pred HHhCCCHHHHHHhhhcCC-HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchh
Q 008585 233 LVSEGVLPPLIRLVESGS-TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV 311 (560)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~ 311 (560)
+.+.|+++.|+++|++++ ...+..++.+|.+++.+++++..+.+.|+++.|+.++.++++.++..++++|.|++.....
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 260 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence 999999999999999874 4566778999999999999999999999999999999999999999999999999975432
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHh
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNL 387 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nl 387 (560)
.. ...++++.+++++.++++ +++..++++|++|+.+++..++.+.+.|+++.|++++.+ +.++..++++|+|+
T Consensus 261 ~~--~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 261 QE--GMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp CS--CCHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hH--HHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 21 225789999999998886 899999999999999888889999999999999999953 47889999999999
Q ss_pred hcc--c---cHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHH--
Q 008585 388 VGS--V---SQEVLISLGFFPRLVHVLKAGS-LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE-- 459 (560)
Q Consensus 388 a~~--~---~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~-- 459 (560)
+.. . .+..+.+.|+++.|+.+|.+++ +.++..++++|+|++.+++.+..+.+.|+++.|++++.+++.++|.
T Consensus 338 ~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 417 (529)
T 1jdh_A 338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417 (529)
T ss_dssp TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---
T ss_pred HcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHH
Confidence 872 2 3567889999999999999876 6999999999999999988889999999999999999876666655
Q ss_pred --------------------HHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH
Q 008585 460 --------------------VAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK 519 (560)
Q Consensus 460 --------------------~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~ 519 (560)
.++.+|++|+.++.++.. +.+.++++.|+.++.+++ +.++..+..++.+++.++..+.
T Consensus 418 ~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~-l~~~~~v~~l~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~ 495 (529)
T 1jdh_A 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV-IRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAE 495 (529)
T ss_dssp --------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHH-HHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSHHHHH
T ss_pred hcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHH-HhccCCccHHHHHHcCCc-hHHHHHHHHHHHHHhcCHHHHH
Confidence 455666778776666554 446799999999999875 4578899999999999999999
Q ss_pred HHHHcChhHHHHHhhccCchhHHHH
Q 008585 520 LMISYGAIGYLKKLSEMDIPGARKL 544 (560)
Q Consensus 520 ~i~~~g~i~~L~~L~~~~~~~akkl 544 (560)
.+.+.|+++.|.+|.+.++++.++.
T Consensus 496 ~i~~~~~~~~L~~l~~~~~~~v~~~ 520 (529)
T 1jdh_A 496 AIEAEGATAPLTELLHSRNEGVATY 520 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHH
T ss_pred HHHHcCChHHHHHHhcCCCHHHHHH
Confidence 9999999999999999998875544
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.3e-32 Score=296.23 Aligned_cols=388 Identities=18% Similarity=0.187 Sum_probs=335.1
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~ 230 (560)
...++.|+..|+++++..+..|+..|.+++.++ .++..+... |+++.|+++|+++ +++++..|+.+|.+++.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 445899999999999999999999999999744 455556654 8899999999765 7999999999999999988899
Q ss_pred HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-C
Q 008585 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-V 308 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~ 308 (560)
..+.+.|+++.|+++|+++++.++..++++|.+++.+ ++.+..+.+.|+++.|+.+++++++.++..++.+|++++. +
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999886 5667788899999999999999999999999999999996 5
Q ss_pred chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHH
Q 008585 309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN 386 (560)
Q Consensus 309 ~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~n 386 (560)
++++..+.+.|+++.++.+++++++...++.++.+|.+++.+ +.++..+.+.|+++.|+.++.+ +.++..++++|.|
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 799999999999999999999887767888899999999985 5678889999999999999976 4678999999999
Q ss_pred hhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHcc--CCHHHHHHHHH
Q 008585 387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA--KPNSVREVAAQ 463 (560)
Q Consensus 387 la~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s--~~~~v~~~A~~ 463 (560)
++....... ...++++.|+.++.++++.++..|+++|++|+.+ ++.+..+.+.|+++.|++++.. .++.++..|+.
T Consensus 254 l~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 254 LSDAATKQE-GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HHTTCTTCS-CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCChhhH-HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 998211110 1236799999999999999999999999999976 6799999999999999999975 34789999999
Q ss_pred HHHHhcCCChh---hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchh
Q 008585 464 AISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG 540 (560)
Q Consensus 464 aL~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~ 540 (560)
+|++|+.+.+. .+..+.+.++++.|+++|.++....++..++.++.+++.++..+..+.+.|+++.|..++..+++.
T Consensus 333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence 99999865432 234455678999999999987545688899999999999999999999999999999998765544
Q ss_pred HHH
Q 008585 541 ARK 543 (560)
Q Consensus 541 akk 543 (560)
.++
T Consensus 413 v~~ 415 (529)
T 1jdh_A 413 TQR 415 (529)
T ss_dssp HC-
T ss_pred HHH
Confidence 443
No 15
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=289.90 Aligned_cols=320 Identities=18% Similarity=0.183 Sum_probs=274.0
Q ss_pred hchHHHHHHHHcc------------CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCH----------HHHHHhhcCCC-
Q 008585 153 HGNTRELLARLQI------------GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI----------AALVQLLTATS- 209 (560)
Q Consensus 153 ~~~i~~Ll~~L~~------------~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v----------~~Lv~lL~~~~- 209 (560)
...++.|+..|+. ++++.+.+|+.+|.+++..+++......+.|.+ +.+++++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 3357888888875 457999999999999999888776666666666 66777777652
Q ss_pred -HH-----HHH-------HHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-----------CCHHHHHHHHHHHHHhh
Q 008585 210 -PR-----IRE-------KTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-----------GSTVGKEKATISLQRLS 265 (560)
Q Consensus 210 -~~-----v~~-------~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~La 265 (560)
.+ +++ +|+++|.+++.++++|..+++.|++++|+.+|.. .++.++..|+++|.+|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 22 555 9999999999998899999999999999999952 24678999999999999
Q ss_pred CChh-hHHHHHhCC-ChHHHHHHhccCChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHhh-cCCchhHHHHH
Q 008585 266 MSAE-MARAIVGHG-GVRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYA 340 (560)
Q Consensus 266 ~~~~-~~~~l~~~g-~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL~-~~~~~~v~~~a 340 (560)
.+++ ++..+...+ +++.|+.+|++++++++..|+++|+||+.. ++++..+.+.|+++.|+++|. +++. .+++.+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~-~v~~~A 307 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSV 307 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH-HHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH-HHHHHH
Confidence 8754 666676554 599999999999999999999999999974 689999999999999999864 4554 899999
Q ss_pred HHHHHHHccCChhHHHHHH-hCCCHHHHHHhccCC------ccHHHHHHHHHHhhc-----cccHHHHHhCCcHHHHHHH
Q 008585 341 AECLQNLTASNENLRRSVV-SEGGIRSLLAYLDGP------LPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHV 408 (560)
Q Consensus 341 ~~~L~~La~~~~~~~~~i~-~~g~l~~L~~ll~~~------~~~~~a~~~L~nla~-----~~~~~~l~~~~~i~~Lv~l 408 (560)
+.+|+||+.+++.++..+. ..|+++.|++++.++ .+++.|+++|+|++. ++++..+.+.|+++.|+.+
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 9999999996666777777 799999999999762 278999999999983 4667888999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHh-CChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh
Q 008585 409 LKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ 473 (560)
Q Consensus 409 L~~~~~~v~~~A~~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~ 473 (560)
|++++..+++.|+++|+|++ .+++.+..+.+.|+++.|++++.+++..+++.|+++|.+|+.+.+
T Consensus 388 L~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999 569999999999999999999999999999999999999996543
No 16
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.6e-33 Score=288.49 Aligned_cols=359 Identities=18% Similarity=0.201 Sum_probs=282.8
Q ss_pred hhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC------------CHHHHHHHHH
Q 008585 151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT------------SPRIREKTVT 218 (560)
Q Consensus 151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~------------~~~v~~~A~~ 218 (560)
.....+..++..+.+.+.+ +....|..+.. +++.+..+++.|.+|.|+++|+.. +++++..|++
T Consensus 29 ~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~ 104 (458)
T 3nmz_A 29 TKVEMVYSLLSMLGTHDKD---DMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104 (458)
T ss_dssp ----------------CCH---HHHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHH---HHHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHH
Confidence 3444577788888777766 36667777766 444667788999999999999863 2799999999
Q ss_pred HHHHHhcCCc-hHHHHHhCCCH----------HHHHHhhhcCC--HH-----HHH-------HHHHHHHHhhCChhhHHH
Q 008585 219 VICSLAESGS-CENWLVSEGVL----------PPLIRLVESGS--TV-----GKE-------KATISLQRLSMSAEMARA 273 (560)
Q Consensus 219 ~L~~La~~~~-~~~~l~~~g~i----------~~Lv~lL~~~~--~~-----~~~-------~a~~~L~~La~~~~~~~~ 273 (560)
+|.+|+...+ ......+.|++ +.+++++.+.. .+ +++ +|+++|.+++.+++++..
T Consensus 105 al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~ 184 (458)
T 3nmz_A 105 ALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA 184 (458)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999988654 44555555555 55666666542 11 444 899999999999999999
Q ss_pred HHhCCChHHHHHHhcc-----------CChHHHHHHHHHHHHhcCCc-hhHHHHHh-cCcHHHHHHHhhcCCchhHHHHH
Q 008585 274 IVGHGGVRPLIEICQT-----------GDSVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDCGILLGSKEYA 340 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a 340 (560)
+.+.|++++|+.++.. .++.++..|+++|.||+.++ +++..+.+ .|++|.|+.+|.++++ ++++.|
T Consensus 185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~-~v~~~A 263 (458)
T 3nmz_A 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI 263 (458)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH-HHHHHH
T ss_pred HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH-HHHHHH
Confidence 9999999999999952 24678999999999999865 46666654 5669999999998886 899999
Q ss_pred HHHHHHHccC-ChhHHHHHHhCCCHHHHHHhc-cC--CccHHHHHHHHHHhhc-c-ccHHHHH-hCCcHHHHHHHHhcCC
Q 008585 341 AECLQNLTAS-NENLRRSVVSEGGIRSLLAYL-DG--PLPQESAVGALRNLVG-S-VSQEVLI-SLGFFPRLVHVLKAGS 413 (560)
Q Consensus 341 ~~~L~~La~~-~~~~~~~i~~~g~l~~L~~ll-~~--~~~~~~a~~~L~nla~-~-~~~~~l~-~~~~i~~Lv~lL~~~~ 413 (560)
+++|+||+.. ++.++..+.+.|+++.|+++| .+ +.+++.++.+|+||+. . +++..+. ..|+++.|+.+|.+++
T Consensus 264 ~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~ 343 (458)
T 3nmz_A 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 343 (458)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 9999999985 678899999999999999975 43 4678999999999998 4 5666666 7899999999999765
Q ss_pred H----HHHHHHHHHHHHHhC----ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCCh
Q 008585 414 L----GAQQAAASALCRVCT----SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV 485 (560)
Q Consensus 414 ~----~v~~~A~~aL~~La~----~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v 485 (560)
+ .+++.|+++|+|++. +++++..+.+.|+++.|++++.+++..+++.|+++|++|+...+..+..+.+.|++
T Consensus 344 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I 423 (458)
T 3nmz_A 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 423 (458)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHH
T ss_pred CcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 4 599999999999994 78999999999999999999999999999999999999996544444555567999
Q ss_pred HHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585 486 PNLVQLLDPSPQNTAKKYAVACLASLSPSK 515 (560)
Q Consensus 486 ~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 515 (560)
+.|+.+|.+++ +.+++.+..+|.+|+.+.
T Consensus 424 ~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 424 SMLKNLIHSKH-KMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHTTTTCSS-HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHHHcCC
Confidence 99999998864 457899999999998654
No 17
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=292.61 Aligned_cols=386 Identities=21% Similarity=0.209 Sum_probs=335.8
Q ss_pred chHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHH
Q 008585 154 GNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN 231 (560)
Q Consensus 154 ~~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~ 231 (560)
..++.++..|..+ +++.+..|+..|..++.. ++++..+.+.|+++.|+++|+++++.++..|+++|.+++.+. +.+.
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 3588899999876 889999999999988864 558888889999999999999999999999999999999875 4778
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCC-hHHHHHHHHHHHHhcCCc
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGD-SVSQAAAACTLKNISAVP 309 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~-~~~~~~a~~aL~nLa~~~ 309 (560)
.+.+.|+++.|+++|+++++.++..++.+|.+++. +++++..+.+.|+++.|+.++++.+ ...+..++.+|+|++.++
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~ 214 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 214 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc
Confidence 88899999999999999999999999999999986 6889999999999999999998754 567788999999999999
Q ss_pred hhHHHHHhcCcHHHHHHHhhc---------------------------------------CCchhHHHHHHHHHHHHccC
Q 008585 310 EVRQMLAEEGIVSVMIKLLDC---------------------------------------GILLGSKEYAAECLQNLTAS 350 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~---------------------------------------~~~~~v~~~a~~~L~~La~~ 350 (560)
+++..+.+.|+++.++.++.+ ++. .+++.++++|++|+..
T Consensus 215 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~-~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 215 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTCN 293 (644)
T ss_dssp THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCH-HHHHHHHHHHHHHHcC
Confidence 999999998888877665543 443 7888889999999888
Q ss_pred ChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhcc-c----cHHHHHhCCcHHHHHHHHhcCC-HHHHHHH
Q 008585 351 NENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGS-V----SQEVLISLGFFPRLVHVLKAGS-LGAQQAA 420 (560)
Q Consensus 351 ~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~-~----~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~A 420 (560)
++.+++.+.+.|+++.|+.++.+ +.++..|+++|+|++.. . .+..+...|+++.|+++|.+.+ +.++..|
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 78888999999999999999964 47899999999999972 1 3455778999999999999875 7999999
Q ss_pred HHHHHHHhCChhHHHHHHhcCCHHHHHHHHccC----------------------CHHHHHHHHHHHHHhcCCChhhHHH
Q 008585 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK----------------------PNSVREVAAQAISSLVTLPQNCREV 478 (560)
Q Consensus 421 ~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~----------------------~~~v~~~A~~aL~~L~~~~~~~~~~ 478 (560)
+++|+|++.+++.+..+.+.|+++.|++++.+. +.+++..++.+|++|+.++.++. .
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~-~ 452 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI-V 452 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHH-H
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHH-H
Confidence 999999999988889999999999999999753 34577889999999998776654 4
Q ss_pred hhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHHH
Q 008585 479 KRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARK 543 (560)
Q Consensus 479 ~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akk 543 (560)
+.+.++++.|+.+|.+.+. .++..+..+|.+++.++..+..|.+.|+++.|.++.+.+++..++
T Consensus 453 l~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~ 516 (644)
T 2z6h_A 453 IRGLNTIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 516 (644)
T ss_dssp HHHTTCHHHHHHHTTCSCH-HHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHhCCcHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHH
Confidence 5567999999999998754 478899999999999999999999999999999999998887644
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1e-31 Score=283.20 Aligned_cols=383 Identities=16% Similarity=0.161 Sum_probs=327.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHh--hChHHHHHHhhC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC-chH
Q 008585 156 TRELLARLQIGHLEAKHKALDSLVEAMK--EDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESG-SCE 230 (560)
Q Consensus 156 i~~Ll~~L~~~~~~~~~~A~~~L~~L~~--~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~-~~~ 230 (560)
++.++..|++++++.+..|+..|..++. .++.. ..+++. |+++.|+++|+++ ++.+|..|+++|.+++... +..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 7789999999999999999999999875 33333 445666 8999999999998 7999999999999999865 466
Q ss_pred HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCC
Q 008585 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV 308 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~ 308 (560)
..+++.|+++.|+++|+++++.+++.|+++|.+++.+ ++.+..+.+.|+++.|+.++.+ .++.++..++++|++++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 7788899999999999999999999999999999886 5678888899999999999995 7899999999999999964
Q ss_pred c--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHH
Q 008585 309 P--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL 384 (560)
Q Consensus 309 ~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L 384 (560)
. .....+. .++++.+++++.++++ .++..++++|.+++...+..+..+.+.|+++.|+.++.+ +.++..++++|
T Consensus 181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 258 (450)
T 2jdq_A 181 KSPPPEFAKV-SPCLNVLSWLLFVSDT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV 258 (450)
T ss_dssp SSSCCCGGGT-GGGHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHccCCH-HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence 3 3333333 7899999999998886 899999999999999877778888899999999999976 56889999999
Q ss_pred HHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585 385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (560)
Q Consensus 385 ~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A 461 (560)
++++. +...+.+.+.|+++.|+.+|.++++.++..|+++|++++. +++..+.+.+.|+++.|++++.++++.+|..|
T Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a 338 (450)
T 2jdq_A 259 GNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338 (450)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99998 2345567788999999999999999999999999999996 57778888889999999999999999999999
Q ss_pred HHHHHHhcCC-C-hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChh------------hHHHHHHcChh
Q 008585 462 AQAISSLVTL-P-QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKK------------CKKLMISYGAI 527 (560)
Q Consensus 462 ~~aL~~L~~~-~-~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~------------~r~~i~~~g~i 527 (560)
+++|++++.+ . ...+.++ +.+.++.|+.++++.+ ..++..++.+|.+++.... ....+.+.|++
T Consensus 339 ~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 339 AWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMD-SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSC-HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence 9999999853 3 4444444 6789999999999764 4578899999988875332 34678899999
Q ss_pred HHHHHhhccCchhHHH
Q 008585 528 GYLKKLSEMDIPGARK 543 (560)
Q Consensus 528 ~~L~~L~~~~~~~akk 543 (560)
+.|..|.+.+++..++
T Consensus 417 ~~l~~l~~~~~~~v~~ 432 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQ 432 (450)
T ss_dssp HHHHHHHCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHH
Confidence 9999998776665443
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.3e-32 Score=297.18 Aligned_cols=383 Identities=18% Similarity=0.185 Sum_probs=333.8
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
..++.|+..|+++++.++..|+..|.+++.+++ ++..++.. |+++.|+++|.++ +++++..|+.+|.+|+.+++.+.
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 358999999999999999999999999998664 55566654 7899999999875 79999999999999999888999
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP 309 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~ 309 (560)
.+.+.|+++.|+++|+++++.++..|+++|.+|+.+ ++.+..+.+.|+++.|+.+++++++.++..++.+|++++. ++
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999876 5667788899999999999999999999999999999996 78
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHh
Q 008585 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL 387 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nl 387 (560)
+++..+.+.|+++.|+.++.+++...+++.++.+|++++.+ +.++..+++.|+++.|+.++.+ +.++..++++|.|+
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999877657889999999999974 5678899999999999999976 56789999999999
Q ss_pred hccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHH
Q 008585 388 VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQA 464 (560)
Q Consensus 388 a~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~--~~~v~~~A~~a 464 (560)
+...... ....++++.|+.+|.++++.++..|+++|++|+.. ++.+..+.+.|+++.|++++... .+.++..|+.+
T Consensus 252 ~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 252 SDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp GGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 9821111 11236799999999999999999999999999976 68899999999999999999863 37899999999
Q ss_pred HHHhcCCChh---hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCch
Q 008585 465 ISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIP 539 (560)
Q Consensus 465 L~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~ 539 (560)
|.+|+...+. .+..+.+.++++.|+++|.+.....+++.++.++.+|+.++.++..+.+.|+++.|.+++..++.
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~ 408 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 408 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccch
Confidence 9999865332 23334467889999999998754568889999999999999999999999999999999876543
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.9e-31 Score=285.13 Aligned_cols=361 Identities=17% Similarity=0.233 Sum_probs=319.5
Q ss_pred hchHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hH
Q 008585 153 HGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~ 230 (560)
...++.|+..|+.++ ++.+..|+.+|.+++.++++++..+++.|+++.|+.+|+++++.+++.|+++|++|+.+.+ ++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 456899999999887 9999999999999999889999999999999999999999999999999999999998765 78
Q ss_pred HHHHhCCCHHHHHHhh-hcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc
Q 008585 231 NWLVSEGVLPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~ 309 (560)
..+...|++++|+.+| .+.+..++..++++|.+|+...+........|+++.|+.++.++++.++..++++|.+++..+
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999 667899999999999999987544444556899999999999999999999999999999765
Q ss_pred -hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHHHHHH
Q 008585 310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALR 385 (560)
Q Consensus 310 -~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~~~L~ 385 (560)
+....+.+.|+++.|+.++.++++ .++..|+++|++|+.+++...+.+++.|+++.|+.++.+ +.++..|+++|+
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSP-SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCCh-hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 445678889999999999999886 899999999999999888888889999999999999965 457899999999
Q ss_pred Hhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585 386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (560)
Q Consensus 386 nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A 461 (560)
|++. ......+.+.|+++.|+.+|.++++.++..|+++|++++.. ++....+.+.|+++.|+.++..+++.++..+
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~a 434 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 434 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9997 34456778899999999999999999999999999999954 7889999999999999999999999999999
Q ss_pred HHHHHHhcCCChh-----------hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585 462 AQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515 (560)
Q Consensus 462 ~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 515 (560)
+.+|.+|+...+. ...++.+.+++..+..+.++.+ +.+++.+..++..+....
T Consensus 435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~-~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 435 LEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDN-NEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCCCc
Confidence 9999999854332 4566777888999999887654 458889999998887644
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.5e-30 Score=292.16 Aligned_cols=385 Identities=22% Similarity=0.216 Sum_probs=337.5
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENW 232 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~ 232 (560)
..++.|+..|+++++..+..|+.+|.+++...+..+..+.+.|+++.|+++|++++..+++.++.+|..++.. ++.+..
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 4688999999999999999999999999998888888888899999999999999999999999999999975 458889
Q ss_pred HHhCCCHHHHHHhhhcCCH-HHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchh
Q 008585 233 LVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV 311 (560)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~ 311 (560)
+.+.|+++.|+++|++++. ..+..++.+|.+|+..++++..+++.|+++.|+.++.++++.++..++++|.+++.....
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~ 393 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 393 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh
Confidence 9999999999999998754 456788999999999889999999999999999999999999999999999999864422
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---C-ccHHHHHHHHHHh
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---P-LPQESAVGALRNL 387 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~-~~~~~a~~~L~nl 387 (560)
. ....++++.|++++.+.+. .++..|+++|++|+..++..++.+.+.|+++.|++++.+ + .++..|+++|+|+
T Consensus 394 ~--~~~~~~i~~Lv~lL~~~d~-~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 394 Q--EGMEGLLGTLVQLLGSDDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 470 (780)
T ss_dssp C--SCCHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred h--hhhhhHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 1 1225689999999998886 899999999999999888889999999999999999954 2 7899999999999
Q ss_pred hc-c-c---cHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCC-------
Q 008585 388 VG-S-V---SQEVLISLGFFPRLVHVLKAGS-LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP------- 454 (560)
Q Consensus 388 a~-~-~---~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~------- 454 (560)
+. . + .+..+...++++.|+.+|.+++ +.++..|+++|+||+.+++.+..+.+.|+++.|++++.+.+
T Consensus 471 ~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 550 (780)
T 2z6g_A 471 TSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550 (780)
T ss_dssp TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHH
Confidence 87 2 2 2457788999999999999876 59999999999999999888899999999999999997532
Q ss_pred ---------------HHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHH
Q 008585 455 ---------------NSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKK 519 (560)
Q Consensus 455 ---------------~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~ 519 (560)
++++..++.+|++|+.++.++. .+.+.++++.|+.+|.+.+ +.++..++.+|.+|+.++..+.
T Consensus 551 a~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~-~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~ 628 (780)
T 2z6g_A 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI-VIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAE 628 (780)
T ss_dssp C------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHH-HHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhccccchhhcccChHHHHHHHHHHHHHHhcChhhHH-HHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCHHHHH
Confidence 4577889999999997776655 4556799999999999874 4578899999999999999999
Q ss_pred HHHHcChhHHHHHhhccCchhHHH
Q 008585 520 LMISYGAIGYLKKLSEMDIPGARK 543 (560)
Q Consensus 520 ~i~~~g~i~~L~~L~~~~~~~akk 543 (560)
.|.+.|+++.|.+|.+.+++..++
T Consensus 629 ~i~~~g~i~~L~~Ll~~~~~~Vr~ 652 (780)
T 2z6g_A 629 AIEAEGATAPLTELLHSRNEGVAT 652 (780)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHH
Confidence 999999999999999988876543
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.7e-30 Score=280.22 Aligned_cols=361 Identities=15% Similarity=0.205 Sum_probs=318.9
Q ss_pred hchHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chH
Q 008585 153 HGNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~ 230 (560)
...++.|+..|.++ +++.+..|+..|.+++..+++....+++.|+++.|+.+|+++++.+++.|+++|++++.+. +++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 35689999999987 8999999999999999988888888889999999999999999999999999999999886 488
Q ss_pred HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC-
Q 008585 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV- 308 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~- 308 (560)
..+...|+++.|+.++.+.+..++..++++|.+|+.+. +........++++.|+.++.++++.++..++++|.+++..
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999999999999999764 4444556689999999999999999999999999999975
Q ss_pred chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHH
Q 008585 309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN 386 (560)
Q Consensus 309 ~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~n 386 (560)
++....+.+.|+++.|+.++.++++ .++..++++|++++.+++...+.+++.|+++.|+.++.+ +.++..|+++|+|
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCCh-hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5678888889999999999998886 899999999999999888888888999999999999987 4679999999999
Q ss_pred hhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--h--hHHHHHHhcCCHHHHHHHHccCCHHHHHH
Q 008585 387 LVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--A--EMKKLVGEAGCTPLLIKLLEAKPNSVREV 460 (560)
Q Consensus 387 la~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~--~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~ 460 (560)
++. +.....+.+.|+++.|+.+|.++++.++..|+++|++++.. + +..+.+.+.|+++.|+.++.+.++.++..
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 447 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 997 34456677899999999999999999999999999999853 4 78888899999999999999999999999
Q ss_pred HHHHHHHhcCCChh-----------hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585 461 AAQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515 (560)
Q Consensus 461 A~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 515 (560)
++.+|.+++...++ ....+.+.++++.|..++.+.+ ..+++.+..++.++....
T Consensus 448 al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~-~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN-DKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC-HHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHCCcc
Confidence 99999999854322 2345667888999999888764 457889999998887544
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.98 E-value=2.8e-30 Score=272.25 Aligned_cols=358 Identities=17% Similarity=0.241 Sum_probs=312.1
Q ss_pred chHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHH
Q 008585 154 GNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CEN 231 (560)
Q Consensus 154 ~~i~~Ll~~L~~~-~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~ 231 (560)
..++.++..|+++ +++.+..|+..|.+++..++++...+++.|+++.|+++|+++++.+++.|+++|++++.+.+ .+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 4588999999988 89999999999999999888888888889999999999999999999999999999999875 888
Q ss_pred HHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCCh--hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 008585 232 WLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSA--EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~--~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~ 308 (560)
.+++.|+++.|++++++ .+..++..++++|.+++.+. .....+. .++++.|+.++.++++.++..++++|.+++.+
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 89999999999999996 68999999999999998753 3333333 78999999999999999999999999999975
Q ss_pred -chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHH
Q 008585 309 -PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALR 385 (560)
Q Consensus 309 -~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~ 385 (560)
++....+.+.|+++.++.++.++++ .++..++++|++++.+++..++.+.+.|+++.|+.++.+ +.++..|+++|+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCch-hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4778888889999999999998886 899999999999999888888888899999999999987 468999999999
Q ss_pred Hhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585 386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA 461 (560)
Q Consensus 386 nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A 461 (560)
|++. +...+.+.+.|+++.|+.+|.++++.++..|+++|++++. +++..+.+.+.|+++.|++++.++++.++..|
T Consensus 302 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 381 (450)
T 2jdq_A 302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVA 381 (450)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 9997 3455667788999999999999999999999999999985 46778888899999999999999999999999
Q ss_pred HHHHHHhcCCChh-----------hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCC
Q 008585 462 AQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (560)
Q Consensus 462 ~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~ 514 (560)
+++|.+++...++ ....+.+.++++.|..++++. ...+++.+..++.++..+
T Consensus 382 ~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 382 LNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE-NQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH-HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCCc
Confidence 9999999854332 234555678888888887764 345788888888877543
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=3.3e-30 Score=289.31 Aligned_cols=387 Identities=18% Similarity=0.181 Sum_probs=333.0
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhC-CCHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCE 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~ 230 (560)
...++.|+..|.++++.++..|+..|.+++... .+...+... |+++.|+++|+++ +++++..|+.+|.+|+.+++++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 446889999999999999999999999998744 455566644 7899999999865 8999999999999999988888
Q ss_pred HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-C
Q 008585 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-V 308 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~ 308 (560)
..+.+.|+++.|+++|+++++.++..|+++|.+|+.+ ++.+..+.+.|+++.|+.++.++++.++..++.+|++++. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999886 5667777789999999999999999999999999999995 6
Q ss_pred chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHH
Q 008585 309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN 386 (560)
Q Consensus 309 ~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~n 386 (560)
++++..+.+.|+++.|+.++++++....++.++.+|.+|+.. +.++..+++.|+++.|+.++.+ +.++..++++|.+
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~ 386 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 386 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 799999999999999999999887656778899999999975 5668889999999999999976 4578999999999
Q ss_pred hhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHcc-CC-HHHHHHHHH
Q 008585 387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA-KP-NSVREVAAQ 463 (560)
Q Consensus 387 la~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s-~~-~~v~~~A~~ 463 (560)
++..... .....++++.|+.+|.+.++.++..|+++|++|+.. ++.+..+.+.|+++.|++++.. .+ +.++..|+.
T Consensus 387 L~~~~~~-~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 387 LSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp HHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hhccchh-hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 9972111 011246799999999999999999999999999976 6888999999999999999975 33 489999999
Q ss_pred HHHHhcCCChh---hHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchh
Q 008585 464 AISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPG 540 (560)
Q Consensus 464 aL~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~ 540 (560)
+|++|+..... .+..+.+.++++.|+.+|.+.....+++.++.+|.+|+.++.++..+.+.|+++.|++++..++++
T Consensus 466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 99999864433 233455678999999999987655788899999999999999999999999999999998765544
Q ss_pred HH
Q 008585 541 AR 542 (560)
Q Consensus 541 ak 542 (560)
.+
T Consensus 546 ~~ 547 (780)
T 2z6g_A 546 TQ 547 (780)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=7.2e-30 Score=258.51 Aligned_cols=264 Identities=19% Similarity=0.213 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-----------CCHHHHHHHHHHHHHhhCCh-hhHHHHHhC
Q 008585 210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-----------GSTVGKEKATISLQRLSMSA-EMARAIVGH 277 (560)
Q Consensus 210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~La~~~-~~~~~l~~~ 277 (560)
...+..|+++|.+++.++++|..+++.|++++|+.+|.. .++.++..|+++|.+|+.+. +++..+...
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345568999999999998899999999999999999953 24678999999999999864 477777665
Q ss_pred CC-hHHHHHHhccCChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHh-hcCCchhHHHHHHHHHHHHccCChh
Q 008585 278 GG-VRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAAECLQNLTASNEN 353 (560)
Q Consensus 278 g~-i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL-~~~~~~~v~~~a~~~L~~La~~~~~ 353 (560)
++ ++.|+.+|++++++++..|+++|+||+.. ++++..+.+.|+++.|+++| .+++. .+++.++.+|+||+..++.
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~-~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH-HHHHHHHHHHHHHHccChh
Confidence 55 99999999999999999999999999974 68999999999999999986 44554 8999999999999997777
Q ss_pred HHHHHH-hCCCHHHHHHhccCC------ccHHHHHHHHHHhhc-----cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 008585 354 LRRSVV-SEGGIRSLLAYLDGP------LPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA 421 (560)
Q Consensus 354 ~~~~i~-~~g~l~~L~~ll~~~------~~~~~a~~~L~nla~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~ 421 (560)
++..+. ..|+++.|++++.++ .+++.|+++|+|++. ++++..+.+.|+++.|+.+|++++..+++.|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 777787 799999999999762 278999999999994 46778889999999999999999999999999
Q ss_pred HHHHHHh-CChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChh
Q 008585 422 SALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN 474 (560)
Q Consensus 422 ~aL~~La-~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~ 474 (560)
++|+|++ .+++.++.+.+.|+++.|++++.+++..+++.|+++|.+|+.+.++
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999 5689999999999999999999999999999999999999976555
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=2.3e-28 Score=247.45 Aligned_cols=260 Identities=20% Similarity=0.226 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCCc-hHHHHHhC-
Q 008585 170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAESGS-CENWLVSE- 236 (560)
Q Consensus 170 ~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~~~~-~~~~l~~~- 236 (560)
.+.+|+.+|.+++.+ ++++..+++.|++++|+.+|.. .++.+|+.|+++|.+|+..++ ++..+...
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 345788999999874 8899999999999999999952 237899999999999998876 77777554
Q ss_pred CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhhHHHHHhCCChHHHHHHh-ccCChHHHHHHHHHHHHhcC-CchhH
Q 008585 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISA-VPEVR 312 (560)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~-~~~~~ 312 (560)
|++|.|+++|+++++.+++.|+++|.+|+.. ++++..+.+.|+++.|+++| +++++.++..++.+|+||+. .++++
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 5599999999999999999999999999874 67899999999999999975 66789999999999999998 67889
Q ss_pred HHHH-hcCcHHHHHHHhhcCCch---hHHHHHHHHHHHHcc---CChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHH
Q 008585 313 QMLA-EEGIVSVMIKLLDCGILL---GSKEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA 383 (560)
Q Consensus 313 ~~i~-e~g~v~~L~~lL~~~~~~---~v~~~a~~~L~~La~---~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~ 383 (560)
..+. +.|+++.|++++.++++. ++++.++++|.||+. .++..++.+.+.|+++.|+++|.+ ..+++.|+++
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 8888 699999999999876642 489999999999997 678889999999999999999987 4579999999
Q ss_pred HHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585 384 LRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 384 L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~ 430 (560)
|+|++. ++.+..+.+.|+++.|+++|+++++.+++.|+++|.||+.+
T Consensus 287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999995 56788899999999999999999999999999999999966
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=4.4e-25 Score=213.47 Aligned_cols=234 Identities=25% Similarity=0.352 Sum_probs=219.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHH
Q 008585 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARA 273 (560)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~ 273 (560)
|+++.|+++|++++++++..|+++|.+++...+ .+..+++.|+++.|+++|++++..++..++++|.+++.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 678999999999999999999999999998876 899999999999999999999999999999999999987 888999
Q ss_pred HHhCCChHHHHHHhccCChHHHHHHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~ 352 (560)
+.+.|+++.|+.+++++++.++..++++|+|++ .+++++..+.+.|+++.+++++.++++ .++..++++|++|+..++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999 577999999999999999999999886 899999999999999888
Q ss_pred hHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 353 ~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
..++.+.+.|+++.|+.++.+ +.++..++++|.+++. +.....+.+.|+++.|+.+++++++.+++.|+++|++|+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 888889999999999999977 5689999999999997 456678889999999999999999999999999999998
Q ss_pred CC
Q 008585 429 TS 430 (560)
Q Consensus 429 ~~ 430 (560)
..
T Consensus 241 ~~ 242 (252)
T 4hxt_A 241 SG 242 (252)
T ss_dssp HT
T ss_pred cC
Confidence 55
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=6.2e-25 Score=212.91 Aligned_cols=236 Identities=18% Similarity=0.277 Sum_probs=214.4
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCEN 231 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~ 231 (560)
...++.++..|++++++.+..|+..|..++..++++...+++.|+++.|+++|+++++.++..|+++|++++.. ++.+.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34588999999999999999999999888877777888899999999999999999999999999999999985 45899
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhH-HHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP 309 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~ 309 (560)
.+++.|+++.|+++|+++++.++..++++|.+|+.+++.+ ..+.+.|+++.|+.+++++++.++..++++|+|++. ++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999999999999999999999999999988887 889999999999999999999999999999999997 55
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHh
Q 008585 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL 387 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nl 387 (560)
+.+..+.+.|+++.|+.++.+++. .++..++++|++++..++..++.+.+.|+++.|+.++.+ +.++..|+++|.|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 788888999999999999999876 899999999999998888888888888888888888865 56788888888887
Q ss_pred hc
Q 008585 388 VG 389 (560)
Q Consensus 388 a~ 389 (560)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 63
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.3e-24 Score=210.08 Aligned_cols=234 Identities=25% Similarity=0.352 Sum_probs=219.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWL 233 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l 233 (560)
.++.++..|++++++.+..|+..|.+++..+++++..+++.|+++.|+++|++++++++..|+++|++++.+ ++.+..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 478999999999999999999999999998888999999999999999999999999999999999999998 4589999
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhh-CChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cchh
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEV 311 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La-~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~ 311 (560)
.+.|+++.++++|+++++.++..++++|.+|+ .+++++..+.+.|+++.|+.+++++++.++..++++|+|++. +++.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 568889999999999999999999999999999999999997 5577
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~ 389 (560)
+..+.+.|+++.++.++.++++ .++..++++|++++..++..++.+.+.|+++.|++++.+ +.+++.|+++|+|++.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 7889999999999999998886 899999999999999888889999999999999999976 5689999999999997
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1e-24 Score=211.43 Aligned_cols=233 Identities=17% Similarity=0.251 Sum_probs=214.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHh-cCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHH
Q 008585 196 SNIAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARA 273 (560)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~ 273 (560)
...+.+++.|++++++++..|+++|.++. .+++.+..+++.|+++.|+++|+++++.++..++++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45899999999999999999999997654 455588899999999999999999999999999999999997 6888999
Q ss_pred HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH-HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~-~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~ 352 (560)
+.+.|+++.|+.+++++++.++..++++|+|++.+++.+ ..+.+.|+++.+++++.+++. .++..++++|++|+..++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHcCCh
Confidence 999999999999999999999999999999999988887 889999999999999999886 899999999999999888
Q ss_pred hHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 353 ~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
..++.+.+.|+++.|+.++.+ +.++..|+++|+|++. +.....+.+.|+++.|+.++.++++.+++.|+++|++|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 888889999999999999977 5689999999999996 456677889999999999999999999999999999997
Q ss_pred C
Q 008585 429 T 429 (560)
Q Consensus 429 ~ 429 (560)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 5
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.6e-23 Score=222.26 Aligned_cols=378 Identities=15% Similarity=0.124 Sum_probs=297.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch-HHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC-ENWL 233 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~-~~~l 233 (560)
+++.+...+..+..+....++-.+.+.+..+...+..+ ...+++.|.+++++ ..++..|+-+|..+...+.. ...+
T Consensus 256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si 332 (778)
T 3opb_A 256 LSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINL 332 (778)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcH
Confidence 45555566655554545556566666666666665555 56888999999976 47899999999999876531 1111
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhC-CChHHHHHHhcc-CChHHHHHHHHHHHHhcCCch-
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH-GGVRPLIEICQT-GDSVSQAAAACTLKNISAVPE- 310 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~-g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~- 310 (560)
. ...+.+.+.|.+++...+..|++.|..++.+++.+..+... |.++.|+.++++ ++..+..-++.+|.|++.+.+
T Consensus 333 ~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 333 K--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp H--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred H--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 1 15677788888877777999999999999999999998875 559999999995 788899999999999985211
Q ss_pred --------------------------------------hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh
Q 008585 311 --------------------------------------VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE 352 (560)
Q Consensus 311 --------------------------------------~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~ 352 (560)
+++.+.+.|+++.|+.++.++++ .+++.++++|.+|+.. +
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~-~~re~A~~aL~nLS~d-~ 488 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSP-NCKQQVVRIIYNITRS-K 488 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTS-G
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCH-HHHHHHHHHHHHHcCC-H
Confidence 45677789999999999999887 8999999999999875 7
Q ss_pred hHHHHHHhCCCHHHHHHhccCC--c---cHHHHHHHHHHhhccccHHHHHh----CCcHHHHHHHHhc--CC--------
Q 008585 353 NLRRSVVSEGGIRSLLAYLDGP--L---PQESAVGALRNLVGSVSQEVLIS----LGFFPRLVHVLKA--GS-------- 413 (560)
Q Consensus 353 ~~~~~i~~~g~l~~L~~ll~~~--~---~~~~a~~~L~nla~~~~~~~l~~----~~~i~~Lv~lL~~--~~-------- 413 (560)
.+|..+++.|+++.|+.++.+. . .+..|..+|.++....++..+.. .+++++|+.+|.. +.
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 7899999999999999999762 2 68999999999997544444432 3889999999983 21
Q ss_pred ---H-HHHHHHHHHHHHHhCCh-----hHHHHHHhc-CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhh-HHHhhhC
Q 008585 414 ---L-GAQQAAASALCRVCTSA-----EMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC-REVKRDD 482 (560)
Q Consensus 414 ---~-~v~~~A~~aL~~La~~~-----~~~~~i~~~-g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~-~~~~~~~ 482 (560)
+ --+..|+.+|.||+..+ +.++.++.. |+++.|..++.+.+..+|..|++++++|+.++... ..++...
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~ 648 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE 648 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence 1 22779999999999764 467888885 99999999999999999999999999999877765 3554322
Q ss_pred -----CChHHHHhccCCCCchhhHHHHHHHHHHhC-CChhhHHHHHHc-ChhHHHHHhhcc--Cchh
Q 008585 483 -----KSVPNLVQLLDPSPQNTAKKYAVACLASLS-PSKKCKKLMISY-GAIGYLKKLSEM--DIPG 540 (560)
Q Consensus 483 -----~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~-~~~~~r~~i~~~-g~i~~L~~L~~~--~~~~ 540 (560)
+.++.|+.+++.++ ...+..|.++|.+++ .++...+.+++. ++++.+..+.+. ++++
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~ 714 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIE 714 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHH
T ss_pred CchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHH
Confidence 13678999998754 457889999999996 577777888876 899999999887 6654
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-23 Score=226.30 Aligned_cols=377 Identities=13% Similarity=0.107 Sum_probs=292.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
+++.|...+++ .+.+..|+..|+.+..........+. ...+.+.++|..++.+.++.|++.|..++.+++.|+.+.
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~ 372 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIR 372 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34444444433 46777888888887654321111111 245667777877776779999999999999999988888
Q ss_pred hC-CCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChh---------------------------------------hHHH
Q 008585 235 SE-GVLPPLIRLVES-GSTVGKEKATISLQRLSMSAE---------------------------------------MARA 273 (560)
Q Consensus 235 ~~-g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~---------------------------------------~~~~ 273 (560)
+. |.+..|+.++++ ++..+...++.+|.|++..++ ++..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 65 569999999995 677889999999999987422 2345
Q ss_pred HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCch--hHHHHHHHHHHHHccC-
Q 008585 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILL--GSKEYAAECLQNLTAS- 350 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~--~v~~~a~~~L~~La~~- 350 (560)
+.+.|+++.|+.+++++++.++..++++|.||+.++++|..+++.|+++.|+.++.+++.. ..+..|+.+|.+|+..
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 6678999999999999999999999999999999999999999999999999999987642 2799999999999953
Q ss_pred ChhHHHHHHh----CCCHHHHHHhccC-Ccc---------------HHHHHHHHHHhhc-cc-----cHHHHHhC-CcHH
Q 008585 351 NENLRRSVVS----EGGIRSLLAYLDG-PLP---------------QESAVGALRNLVG-SV-----SQEVLISL-GFFP 403 (560)
Q Consensus 351 ~~~~~~~i~~----~g~l~~L~~ll~~-~~~---------------~~~a~~~L~nla~-~~-----~~~~l~~~-~~i~ 403 (560)
++.. ++. .|++++|+.+|.. +.. +..|+.+|.||+. +. .+..++.. |+++
T Consensus 533 np~~---~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~ 609 (778)
T 3opb_A 533 NPGL---IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS 609 (778)
T ss_dssp CHHH---HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHH
T ss_pred CHHH---HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHH
Confidence 3332 232 3889999999973 221 6799999999998 42 25667775 9999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhCChhHH-HHHHhc------CCHHHHHHHHccCCHHHHHHHHHHHHHhc-CCChhh
Q 008585 404 RLVHVLKAGSLGAQQAAASALCRVCTSAEMK-KLVGEA------GCTPLLIKLLEAKPNSVREVAAQAISSLV-TLPQNC 475 (560)
Q Consensus 404 ~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~-~~i~~~------g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~-~~~~~~ 475 (560)
.|..+|.+++..+|+.|+++++||+.+++.. +.+.+. +.++.|+.++.+++.++|..|+++|++++ .++..+
T Consensus 610 ~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia 689 (778)
T 3opb_A 610 TIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA 689 (778)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH
Confidence 9999999999999999999999999987764 344322 24889999999999999999999999996 577778
Q ss_pred HHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHhCC----Ch--hhHHHHH-HcChhHHHHHhhccCc
Q 008585 476 REVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSP----SK--KCKKLMI-SYGAIGYLKKLSEMDI 538 (560)
Q Consensus 476 ~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~~----~~--~~r~~i~-~~g~i~~L~~L~~~~~ 538 (560)
+.++...+++..++.++.+. +.+.++..++.++.||+. +. +....+. .....+.|.++.+.++
T Consensus 690 ~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 690 KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 88887768999999999883 455678889999998884 22 2333444 4566667777766654
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=2.8e-21 Score=181.68 Aligned_cols=194 Identities=21% Similarity=0.267 Sum_probs=178.2
Q ss_pred hCCChHHHHHHhccCChHHHHHHHHHHHHhc-CCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH
Q 008585 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (560)
Q Consensus 276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa-~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (560)
..++.+.|+.+++++++.++..|+++|.+++ .+++.+..+.+.|+++.+++++.++++ .++..|+++|+|++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCcHH
Confidence 4678899999999999999999999999999 467899999999999999999999886 89999999999999988898
Q ss_pred HHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585 355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 355 ~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~ 430 (560)
++.+++.|+++.|+.++++ +.++..|+++|+|++. +.....+.+.|+++.|+++|+++++.++..|+++|++++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999987 4678999999999997 35556788999999999999999999999999999999977
Q ss_pred -hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585 431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (560)
Q Consensus 431 -~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~ 470 (560)
++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999974
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=8.8e-22 Score=185.91 Aligned_cols=198 Identities=15% Similarity=0.133 Sum_probs=176.4
Q ss_pred hhhchHHHHHHHHccCCH--HHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-C
Q 008585 151 TTHGNTRELLARLQIGHL--EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-G 227 (560)
Q Consensus 151 ~~~~~i~~Ll~~L~~~~~--~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~ 227 (560)
+....++.++..|+++++ +.+..|+..|..++.++++++..+++.|++++|+++|+++++++|+.|+++|.+|+.. +
T Consensus 5 ~~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 5 DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred chhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 345679999999999988 8888999999999999999999999999999999999999999999999999999985 5
Q ss_pred chHHHHHhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc----------------cC
Q 008585 228 SCENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ----------------TG 290 (560)
Q Consensus 228 ~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~----------------~~ 290 (560)
+++..+.+.|++++|+++|+ +++..+++.++.+|++|+..++++..+.+. ++++|+.++. ..
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccc
Confidence 69999999999999999998 478999999999999999999999988874 6999988652 12
Q ss_pred ChHHHHHHHHHHHHhcC-CchhHHHHHh-cCcHHHHHHHhhcC------CchhHHHHHHHHHHHHccC
Q 008585 291 DSVSQAAAACTLKNISA-VPEVRQMLAE-EGIVSVMIKLLDCG------ILLGSKEYAAECLQNLTAS 350 (560)
Q Consensus 291 ~~~~~~~a~~aL~nLa~-~~~~~~~i~e-~g~v~~L~~lL~~~------~~~~v~~~a~~~L~~La~~ 350 (560)
++.++..|..+|+||+. ++++|+.|.+ .|+|+.|+.+++.+ ++ ..+++|+.+|+||++.
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~-k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDD-KATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchh-HHHHHHHHHHHHHHhh
Confidence 56899999999999987 5699999998 57899999999852 33 7899999999999874
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=5e-21 Score=179.95 Aligned_cols=196 Identities=20% Similarity=0.303 Sum_probs=181.1
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN 231 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~ 231 (560)
....+.++..|++++++.+..|+..|.+++..+++++..+++.|+++.|+++|+++++.+++.|+++|++++... +.+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 345778888999999999999999999999888999999999999999999999999999999999999999655 5888
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC-c
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-P 309 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~ 309 (560)
.+++.|+++.|+++|+++++.++..++++|.+|+.+ ++....+.+.|+++.|+.+++++++.++..++++|+|++.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999864 66677888999999999999999999999999999999976 7
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
+.+..+.+.|+++.|++++.+++. .+++.|+++|.+|+.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENE-KIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHhc
Confidence 889999999999999999998886 899999999999985
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=184.32 Aligned_cols=192 Identities=18% Similarity=0.213 Sum_probs=169.7
Q ss_pred CHHHHHHhhcCCCH--HHHHHHHHHHHHHhcCC-chHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHH
Q 008585 197 NIAALVQLLTATSP--RIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMAR 272 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~--~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~ 272 (560)
.++.|+++|.++++ .++..|+++|.+++..+ +.+..+++.|+||+|+++|+++++.+++.|+++|.+|+. +++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999987 89999999999999654 589999999999999999999999999999999999998 589999
Q ss_pred HHHhCCChHHHHHHhc-cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhh---cC------------CchhH
Q 008585 273 AIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CG------------ILLGS 336 (560)
Q Consensus 273 ~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~---~~------------~~~~v 336 (560)
.+.+.|+++.|+.+|+ ++++.++..++.+||||+..++++..+.+. +++.|++++. ++ .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999999875 7999988763 11 12379
Q ss_pred HHHHHHHHHHHccCChhHHHHHHhC-CCHHHHHHhccC--------CccHHHHHHHHHHhhc
Q 008585 337 KEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVGALRNLVG 389 (560)
Q Consensus 337 ~~~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~ll~~--------~~~~~~a~~~L~nla~ 389 (560)
+++|..+|.||+..+++.|+.+.+. |+++.|+.++++ ...+++|+.+|+||+.
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999999999888889999876 557999999853 3468899999999986
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=8.4e-20 Score=179.88 Aligned_cols=199 Identities=18% Similarity=0.192 Sum_probs=176.2
Q ss_pred hHHHHHHHHccC------------CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHH-hhcCCCHHHHHHHHHHHH
Q 008585 155 NTRELLARLQIG------------HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVIC 221 (560)
Q Consensus 155 ~i~~Ll~~L~~~------------~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~ 221 (560)
.++..+..|.+. +.+.+..|+..|.+++. +.++...+...|++++|+. +|+++++.+++.|+++|+
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356666666543 34678899999999997 5558788889999999999 999999999999999999
Q ss_pred HHhcCCc-hHHHHHhCCCHHHHHHhhhcC-CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHH
Q 008585 222 SLAESGS-CENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAA 298 (560)
Q Consensus 222 ~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a 298 (560)
+++.+++ ++..+++.|++++|+++|+++ +..++..|+|+|.+|+.+ ++....+.+.|+++.|+.+|+++++.++..|
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9998765 888999999999999999964 889999999999999875 6667789999999999999999999999999
Q ss_pred HHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH
Q 008585 299 ACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355 (560)
Q Consensus 299 ~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (560)
+++|.|++. +++.+..+++.|+++.|+.+|.+++. .+++.++.+|++|+...+...
T Consensus 188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~-~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS-PFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS-THHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh-hHHHHHHHHHHHHHhCChhHH
Confidence 999999986 57899999999999999999999887 899999999999998755443
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=6.7e-20 Score=180.58 Aligned_cols=223 Identities=18% Similarity=0.175 Sum_probs=183.3
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHH-HhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHh
Q 008585 292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK-LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY 370 (560)
Q Consensus 292 ~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~-lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~l 370 (560)
.+-+..|+..|.+++.+.++...+...|+++.++. +|.++++ .++..|+++|++++.+++..++.+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~-~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA-GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 35678899999999998899999999999999999 9999886 899999999999999999999999999999999999
Q ss_pred ccC---CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHH
Q 008585 371 LDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTP 444 (560)
Q Consensus 371 l~~---~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~ 444 (560)
+.+ +.++..|+++|+|++. +...+.+.+.|+++.|+.+|+++++.++..|+++|++++. +++.+..+.+.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 973 3579999999999998 3556778889999999999999999999999999999985 488999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhC-CCh----HHHHhccCCCC-chhhHHHHHHHHHHhCCCh
Q 008585 445 LLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDD-KSV----PNLVQLLDPSP-QNTAKKYAVACLASLSPSK 515 (560)
Q Consensus 445 ~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~-~~v----~~Lv~lL~~~~-~~~~~~~a~~~L~~L~~~~ 515 (560)
.|+.++.+++..+++.|+.+|.+|+.+.+......... ..+ ..-..-+...+ .....+++..++-.+...+
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999997744332222211 111 11122333232 2356677777777766543
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=4.1e-15 Score=156.53 Aligned_cols=319 Identities=14% Similarity=0.164 Sum_probs=252.7
Q ss_pred hhchHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc
Q 008585 152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~ 228 (560)
....|+.|..+++++. .+.|+.|+..|..++++.+ .-+..++++.|+..|+.+ |.++...++.+|.++-..++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 4556999999998765 7889999999999987544 234567899999999864 68889999999987654322
Q ss_pred ------------------hHHH-HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hh-hHHHHH-hCCChHHHHHH
Q 008585 229 ------------------CENW-LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AE-MARAIV-GHGGVRPLIEI 286 (560)
Q Consensus 229 ------------------~~~~-l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~-~~~~l~-~~g~i~~Lv~l 286 (560)
..+. +.+.+.++.|+.+|++.+..+|.++..+|..|+.+ ++ .+..+. ..+|++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1112 23567899999999999999999999999999765 44 567777 56999999999
Q ss_pred hccCChHHHHHHHHHHHHhcCC-chhHHHHHhcCcHHHHHHHhhcCC---chhHHHHHHHHHHHHccCChhHHHHHHhCC
Q 008585 287 CQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGI---LLGSKEYAAECLQNLTASNENLRRSVVSEG 362 (560)
Q Consensus 287 l~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~v~~L~~lL~~~~---~~~v~~~a~~~L~~La~~~~~~~~~i~~~g 362 (560)
|.+....+|..++..|.+|+.+ +++++.+.-+|+++.++.++.... ...+..-|+.+|.||...|..++..+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9999999999999999999974 567777777999999999998533 125788999999999999999999999999
Q ss_pred CHHHHHHhccCC-c-------c---HHHHHHHHHHhhcc--------ccHHHHHhCCcHHHHHHHHhcC--CHHHHHHHH
Q 008585 363 GIRSLLAYLDGP-L-------P---QESAVGALRNLVGS--------VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAA 421 (560)
Q Consensus 363 ~l~~L~~ll~~~-~-------~---~~~a~~~L~nla~~--------~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~ 421 (560)
+++.|..+++.+ + . ...++.+++.|..+ .++..+.+.|++..|++++... ...++..|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999998641 1 1 12367777777763 2466888999999999998875 578999999
Q ss_pred HHHHHHhCC-hhHHHHHHhcC---------CHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCChh
Q 008585 422 SALCRVCTS-AEMKKLVGEAG---------CTPLLIKLLEA-KPNSVREVAAQAISSLVTLPQN 474 (560)
Q Consensus 422 ~aL~~La~~-~~~~~~i~~~g---------~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~~~~~ 474 (560)
.+++.+.++ +.++..+.+.. .+..|+.++.+ ....+|..|+.++.....+++.
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 999999865 77888887643 33334444544 3577899999999999866543
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.68 E-value=1.1e-13 Score=145.89 Aligned_cols=393 Identities=14% Similarity=0.138 Sum_probs=278.2
Q ss_pred hchHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChH-----------------HHHHH-hhCCCHHHHHHhhcCCCHHH
Q 008585 153 HGNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEK-----------------NVLAV-MGRSNIAALVQLLTATSPRI 212 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~-----------------~~~~i-~~~g~v~~Lv~lL~~~~~~v 212 (560)
...++.|+..|+.+ |.+....++++|..+...+++ +...+ .+.++++.|+.+|++.+..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 33488889998754 677788889999888764432 11233 35678999999999999999
Q ss_pred HHHHHHHHHHHhcCCc--hHHHHHh-CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh-HHHHHhCCChHHHHHHhc
Q 008585 213 REKTVTVICSLAESGS--CENWLVS-EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQ 288 (560)
Q Consensus 213 ~~~A~~~L~~La~~~~--~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~-~~~l~~~g~i~~Lv~ll~ 288 (560)
|..++..|..|+...+ .++.+.. .++++.|+.+|++....+|..+...|.+|+.+... +..++-.|+++.|+.+++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999987764 6777774 48999999999999999999999999999987554 555555799999999998
Q ss_pred cCCh----HHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCch-----hHHHH---HHHHHHHHccC-----
Q 008585 289 TGDS----VSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILL-----GSKEY---AAECLQNLTAS----- 350 (560)
Q Consensus 289 ~~~~----~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~-----~v~~~---a~~~L~~La~~----- 350 (560)
.+.. .+...++.+|.||.. ++.|+..|.|.|+++.|..+++.+++. ....+ ++.++.-+...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 7444 788899999999997 557999999999999999999755421 12233 66677777664
Q ss_pred -ChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhc--cccHHHHHhCC---------cHHHHHHHHhc-CC
Q 008585 351 -NENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLISLG---------FFPRLVHVLKA-GS 413 (560)
Q Consensus 351 -~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~--~~~~~~l~~~~---------~i~~Lv~lL~~-~~ 413 (560)
+..++..+.+.|+++.+++++-. ..++..|+.+++.+.+ +.+++.+.+.. ++..|+.++.+ ..
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 33577888999999999999865 3467889999999988 35566665432 23334455554 35
Q ss_pred HHHHHHHHHHHHHHhC-ChhHHHHHHhc----------CC---HHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHh
Q 008585 414 LGAQQAAASALCRVCT-SAEMKKLVGEA----------GC---TPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK 479 (560)
Q Consensus 414 ~~v~~~A~~aL~~La~-~~~~~~~i~~~----------g~---i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~ 479 (560)
..++..|+.++..+.. +++.+..+... +. -..|...+.+.++---..|+.+|.++..+++..++..
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~ 458 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQL 458 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8889999999998874 46666666543 00 1134455556666555779999999998877776654
Q ss_pred hh--------CCC---hHHHHhccCCCCchhhHHHHHHHHH----HhCCChhhHHHHHHcC-hhHHHHHhhccCchhHHH
Q 008585 480 RD--------DKS---VPNLVQLLDPSPQNTAKKYAVACLA----SLSPSKKCKKLMISYG-AIGYLKKLSEMDIPGARK 543 (560)
Q Consensus 480 ~~--------~~~---v~~Lv~lL~~~~~~~~~~~a~~~L~----~L~~~~~~r~~i~~~g-~i~~L~~L~~~~~~~akk 543 (560)
.. +.. +..+..+|..+.+.. ..++.|+ =|..++..-+.|.+.| .+++|.....-+..+..-
T Consensus 459 l~v~l~~~~ge~~vtliq~~~~~L~~~~~~r---i~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~ 535 (651)
T 3grl_A 459 LRVQLATSIGNPPVSLLQQCTNILSQGSKIQ---TRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQ 535 (651)
T ss_dssp TTCBCCCCTTCCCCBHHHHHHHHTTTTCCHH---HHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCHHHH
T ss_pred HhCcccccCCCCcccHHHHHHHHHhcCCchh---HHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCcchH
Confidence 32 111 334455565443221 2233333 4557887777777766 588888655322222344
Q ss_pred HHHHH
Q 008585 544 LLERL 548 (560)
Q Consensus 544 l~~~l 548 (560)
+++.|
T Consensus 536 lvqGL 540 (651)
T 3grl_A 536 LVQGL 540 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.54 E-value=1.8e-13 Score=148.48 Aligned_cols=371 Identities=11% Similarity=0.067 Sum_probs=252.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
.++.+...++..+..++..|+..|..++...+.. ......++.+..+++++++.+|..++.+|+.++..... ...
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~ 278 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EIT 278 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccc
Confidence 3455555556666666777777776666543221 11123567777778777888888888888888764221 112
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~ 312 (560)
....++.+++++++.++.+|..++.+|..++.. ++......-...++.+..+++++++.+|..++.+|..++..-+
T Consensus 279 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-- 356 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-- 356 (588)
T ss_dssp HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--
T ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--
Confidence 335688899999999999999999999998653 2222112234456888899999999999999999999874211
Q ss_pred HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhcc
Q 008585 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS 390 (560)
Q Consensus 313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~ 390 (560)
........++.+..+++++++ .++..++.+|..+....... ......++.+..++.+ ..++..++.+|..++..
T Consensus 357 ~~~~~~~l~p~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~ 432 (588)
T 1b3u_A 357 KDNTIEHLLPLFLAQLKDECP-EVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432 (588)
T ss_dssp HHHHHHHTHHHHHHHHTCSCH-HHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 111223478889999988876 89999999998887632210 1112346777777766 35788899999998861
Q ss_pred ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585 391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (560)
Q Consensus 391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~ 470 (560)
-..+ .....+++.+...+.+++..++..|+.+++.++..-... ......+|.|.+++.+.+..+|..++.++..++.
T Consensus 433 ~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 433 LGVE-FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp HCGG-GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred cCHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 1111 112236788888899899999999999999998542111 1124578889988888889999999999999974
Q ss_pred CChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHHHHH
Q 008585 471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGARKLL 545 (560)
Q Consensus 471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~ 545 (560)
.-.. ..+. ...++.++.++++.+ ..++..++.++..+...-+ ..+....+++.|.++.+-.+++.+..+
T Consensus 510 ~~~~-~~~~--~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~--~~~~~~~~~p~l~~l~~d~d~~vr~~a 578 (588)
T 1b3u_A 510 VCGQ-DITT--KHMLPTVLRMAGDPV-ANVRFNVAKSLQKIGPILD--NSTLQSEVKPILEKLTQDQDVDVKYFA 578 (588)
T ss_dssp HHHH-HHHH--HHTHHHHHHGGGCSC-HHHHHHHHHHHHHHGGGSC--HHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hcCH-HHHH--HHHHHHHHhhCCCCC-chHHHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHcCCCchhHHHHH
Confidence 3221 1122 256788999988763 4588899999998875322 123345677888888766666655443
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.54 E-value=1.1e-12 Score=128.71 Aligned_cols=255 Identities=14% Similarity=0.039 Sum_probs=195.8
Q ss_pred HhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhH
Q 008585 192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA 271 (560)
Q Consensus 192 i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 271 (560)
..+.+.++.|+..|+++++.+|..|+.+|+.+.. .+.++.|+++|++.++.+|..++++|..+...++..
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 3456789999999999999999999999999872 236899999999999999999999999997544332
Q ss_pred HHHHhCCChHHHH-HHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 272 RAIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 272 ~~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
.. .++.|. .++.++++.++..++++|.++.. ++.. ...+++.+..++.++++ .++..++.+|+++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~-~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKST-NVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCH-HHHHHHHHHHHTC--
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCH-HHHHHHHHHHHhcCC
Confidence 22 123343 24567899999999999999863 2211 12468889999998886 899999999998753
Q ss_pred CChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008585 350 SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV 427 (560)
Q Consensus 350 ~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L 427 (560)
...++.|+.++.+ +.++..++++|+.+.... ...++.|+.+++++++.++..|+++|+++
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 2468899999977 457899999999885321 13578899999999999999999999998
Q ss_pred hCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHH
Q 008585 428 CTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVAC 507 (560)
Q Consensus 428 a~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~ 507 (560)
.. ...++.|+.++.+++ +|..|..+|..+.. ...++.|..++.+.+++.....++..
T Consensus 220 ~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 220 KD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp TC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred CC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 72 357899999997644 89999999999842 13568888888776544455555544
Q ss_pred H
Q 008585 508 L 508 (560)
Q Consensus 508 L 508 (560)
+
T Consensus 277 l 277 (280)
T 1oyz_A 277 L 277 (280)
T ss_dssp H
T ss_pred h
Confidence 3
No 43
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.52 E-value=6.9e-13 Score=143.84 Aligned_cols=367 Identities=14% Similarity=0.109 Sum_probs=260.9
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
..++.+...++..++++|..|+..|..++...+.. ......++.+..+++++++.+|..|+.+|..++..-+.. .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 34555556667889999999999999998654322 112356888999999999999999999999998754321 1
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC--chh
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--PEV 311 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~ 311 (560)
....+++.+.+++++.++.+|..++.+|..++..... .......++.++.+++++++.+|..++.+|..++.. ++.
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 2234788888999999999999999999999753211 112234578999999999999999999999998752 232
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~ 389 (560)
+....-...++.+..++.+.++ .+|..++.+|+.++..-.. .......++.+..++.+ +.++..++.++..++.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~-~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQ-HVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCH-HHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 2223335678899999988886 8999999999998752111 11122357778888876 4688888888888876
Q ss_pred cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 008585 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS 467 (560)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~ 467 (560)
...... ....+++.+..++.+.+..++..++.++..++.. ++. .....++.+..++.+.+..+|..|+.++..
T Consensus 393 ~~~~~~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 393 VIGIRQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNLKK 467 (588)
T ss_dssp HSCHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred hcCHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 222221 1245688888889888999999999999998743 111 112357888999999999999999999999
Q ss_pred hcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHcChhHHHHHhhccCchhHH
Q 008585 468 LVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISYGAIGYLKKLSEMDIPGAR 542 (560)
Q Consensus 468 L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~g~i~~L~~L~~~~~~~ak 542 (560)
++...... +. ....++.+..++.+.+ ..++..++.++..++..-. ........++.|.++++-.++..+
T Consensus 468 l~~~~~~~--~~-~~~llp~l~~~~~~~~-~~~R~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~~Vr 536 (588)
T 1b3u_A 468 LVEKFGKE--WA-HATIIPKVLAMSGDPN-YLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVANVR 536 (588)
T ss_dssp HHHHHCHH--HH-HHHTHHHHHHTTTCSC-HHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCHHHH
T ss_pred HHHHhCch--hH-HHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhCCCCCchHH
Confidence 97432221 11 1256688888776543 3578888888887764321 222345677888888776666554
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.51 E-value=2.2e-12 Score=126.42 Aligned_cols=251 Identities=14% Similarity=0.076 Sum_probs=195.7
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
..++.|+..|..+++.++..|+..|..+. ++ +.++.|+.+|+++++.+|..|+.+|+.+...++....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~- 90 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN- 90 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC--Cc---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-
Confidence 35889999999999999999999998874 22 3578899999999999999999999999755432111
Q ss_pred HhCCCHHHHH-HhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchh
Q 008585 234 VSEGVLPPLI-RLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV 311 (560)
Q Consensus 234 ~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~ 311 (560)
.++.+. .++++.++.++..++++|.++.. ++.... ..++.|+..+.++++.+|..++.+|.++..
T Consensus 91 ----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 233444 24677899999999999999963 222222 235889999999999999999999998764
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~ 389 (560)
.++++.|+.++.+++. .++..++++|+++...++. .++.|..++.+ +.++..++.+|+++.
T Consensus 158 ------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL~~~~- 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNG-DVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRK- 220 (280)
T ss_dssp -------CCHHHHHHHHTCSSH-HHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHTT-
T ss_pred ------HHHHHHHHHHHcCCCH-HHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHHHHhC-
Confidence 3589999999998886 8999999999998654443 26778888876 568999999999986
Q ss_pred cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHH
Q 008585 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAIS 466 (560)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~ 466 (560)
....++.|+..+++++ ++..|+.+|+++.. ...++.|.+++.. .++++...+..+|.
T Consensus 221 --------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 221 --------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp --------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred --------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 2457899999998755 88999999999864 2568999999964 56667777776664
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.51 E-value=9.9e-14 Score=157.73 Aligned_cols=347 Identities=14% Similarity=0.124 Sum_probs=235.3
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHH-Hh---hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLA-VM---GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC 229 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~-i~---~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~ 229 (560)
..++.++..+++++...+..++..|..++.+.+..... .. -...++.++++++++++.+|..|+.+|..+......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 36888899999999999999999999998765433111 00 013477778888888999999999999988755431
Q ss_pred HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 008585 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308 (560)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~ 308 (560)
...-.-.+.++.+++.+.++++.++..++++|.+++.. ++.-.... .+.++.++..+++.++.++..|+..+.+++..
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 11001124678888889999999999999999999764 32211111 13567788888888999999999999999976
Q ss_pred chhHHHHHh--cCcHHHHHHHh-----------hc-----------CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCH
Q 008585 309 PEVRQMLAE--EGIVSVMIKLL-----------DC-----------GILLGSKEYAAECLQNLTASNENLRRSVVSEGGI 364 (560)
Q Consensus 309 ~~~~~~i~e--~g~v~~L~~lL-----------~~-----------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l 364 (560)
...++.+.. ...++.++..+ .+ ... .++..+..+|..++...+. .++. ..+
T Consensus 287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~-~vr~~a~~~L~~la~~~~~---~~~~-~l~ 361 (852)
T 4fdd_A 287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW-NLRKCSAAALDVLANVYRD---ELLP-HIL 361 (852)
T ss_dssp TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC-CHHHHHHHHHHHHHHHHGG---GGHH-HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc-hHHHHHHHHHHHHHHhccH---HHHH-HHH
Confidence 544443321 34567777666 22 112 4788999999999863221 1111 235
Q ss_pred HHHHHhccC--CccHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hh--HHHHH
Q 008585 365 RSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AE--MKKLV 437 (560)
Q Consensus 365 ~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~--~~~~i 437 (560)
+.+...+.+ +..++.|+.+|++++.... +.+ .-..+++.++..+++.++.|+..|++++++++.. .. ....+
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 440 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL 440 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 666666665 5679999999999997211 111 2245688889999999999999999999999853 11 11111
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-hhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 438 GEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 438 ~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
.+.++.|++.+.+.++.+|..|+.+|.+++... .....++ ...++.|+..++.... .....+..++..++
T Consensus 441 --~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~-~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 441 --KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQH-KNLLILYDAIGTLA 511 (852)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhCh-HHHHHHHHHHHHHH
Confidence 356888999998889999999999999998432 2222333 2445677777765432 23334445555443
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.49 E-value=3e-13 Score=153.80 Aligned_cols=380 Identities=14% Similarity=0.078 Sum_probs=244.0
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (560)
...++.++..++.++++++..|+..|..++...++......+ +.++.++.++++.++.++..|+..+..++.....+..
T Consensus 214 ~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHH
Confidence 356777888888899999999999999999877754333222 4688888899988999999999999999987654443
Q ss_pred HHh--CCCHHHHHHhh-----------hc-----------CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc
Q 008585 233 LVS--EGVLPPLIRLV-----------ES-----------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ 288 (560)
Q Consensus 233 l~~--~g~i~~Lv~lL-----------~~-----------~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~ 288 (560)
+.. ...++.++..+ .+ .+..++..++.+|..++..... .+. ...++.+...+.
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~ 369 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLF 369 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhc
Confidence 211 13456666665 22 2234688899999998764221 111 124577778888
Q ss_pred cCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHH
Q 008585 289 TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL 368 (560)
Q Consensus 289 ~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~ 368 (560)
++++.+|..|+.+|++++......-.-.-.++++.++.++.+++. .++..++++|++++...........-.+.++.++
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~ 448 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA-LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL 448 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 899999999999999999754211111125678999999988886 8999999999999863211000001123467777
Q ss_pred HhccC--CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhH-HHHHHhcC
Q 008585 369 AYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEM-KKLVGEAG 441 (560)
Q Consensus 369 ~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~-~~~i~~~g 441 (560)
..+.+ +.++..|+++|.+++. ...... .-..+++.|+..++..+......+..+++.++.. +.. +..+. ..
T Consensus 449 ~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~-~~ 526 (852)
T 4fdd_A 449 KRILDSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QM 526 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH-HH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH-HH
Confidence 77754 6789999999999997 111110 1235677788888777777766777888887632 111 11121 23
Q ss_pred CHHHHHHHH---ccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCC----------------CCchhhH
Q 008585 442 CTPLLIKLL---EAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDP----------------SPQNTAK 501 (560)
Q Consensus 442 ~i~~Lv~ll---~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~----------------~~~~~~~ 501 (560)
.+|.+++.. .+.++.++ .+.+++..++.. ......+.. ..++.++.++.. .++...+
T Consensus 527 l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~--~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~ 603 (852)
T 4fdd_A 527 LMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCE--PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM 603 (852)
T ss_dssp HHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred HHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHH
Confidence 467676433 34555564 778888888732 122222221 122333333221 1223456
Q ss_pred HHHHHHHHHhCC--ChhhHHHHHHcChhHHHHHhhccCchhHH
Q 008585 502 KYAVACLASLSP--SKKCKKLMISYGAIGYLKKLSEMDIPGAR 542 (560)
Q Consensus 502 ~~a~~~L~~L~~--~~~~r~~i~~~g~i~~L~~L~~~~~~~ak 542 (560)
..++..+..++. ....+..+...++++.+........+..+
T Consensus 604 ~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr 646 (852)
T 4fdd_A 604 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR 646 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH
Confidence 667777777764 23455556578999999888766555444
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.42 E-value=1.4e-11 Score=133.90 Aligned_cols=330 Identities=13% Similarity=0.124 Sum_probs=227.5
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchH-H
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-N 231 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~-~ 231 (560)
...++.+...+.+.++.+|..|+.++..+...+++.. .+.+.++.+.++|.++++.++..|+.+|..++.+.+.. .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 4456778888899999999999999999998766432 23467899999999999999999999999999875411 0
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC---
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--- 307 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--- 307 (560)
.-...+.+..|++.+.+.++..+.....++.++... ++... ..++.+..++++.++.++..|++++.++..
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 001123467788888888999999999999888753 22222 235777888888999999999999999974
Q ss_pred -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-CccHHHHHHHHH
Q 008585 308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALR 385 (560)
Q Consensus 308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-~~~~~~a~~~L~ 385 (560)
+++..+.+. ..+.+.++.++. ++. .+|+.++.+|..+...++.. +.. .+..+....++ ..++..++..+.
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~~-~d~-~vr~~aL~~l~~i~~~~p~~----~~~-~~~~~~~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLLS-GEP-EVQYVALRNINLIVQKRPEI----LKQ-EIKVFFVKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHTT-SCH-HHHHHHHHHHHHHHHHCCST----TTT-CTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHhc-CCc-cHHHHHHHHHHHHHHhChHH----HHH-HHHhheeccCChHHHHHHHHHHHH
Confidence 334433333 345677776664 554 89999999999998744431 111 11112111222 346788888888
Q ss_pred HhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHH
Q 008585 386 NLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA 464 (560)
Q Consensus 386 nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~a 464 (560)
+++...+.+. +++.|..++.+.+.+++..++++|++++.. +.... .+++.|++++......++..+..+
T Consensus 344 ~l~~~~nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 344 RLASQANIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp HTCCSSTHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHCChhhHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHH
Confidence 8887544432 466777888888888999999999998854 32222 347788888887777777777777
Q ss_pred HHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585 465 ISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (560)
Q Consensus 465 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 513 (560)
+..+....++. ....+..|...+++...+..+..++.+++..+.
T Consensus 414 l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~ 457 (591)
T 2vgl_B 414 IRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAE 457 (591)
T ss_dssp HHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence 87776432222 134556677777654444456666666665543
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.34 E-value=2e-11 Score=132.76 Aligned_cols=293 Identities=16% Similarity=0.180 Sum_probs=212.8
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW 232 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~ 232 (560)
+..+.++-..|++++.+.+.+++..+..+..-+.+ -..+...+++++.+++..++..+..++..++...+. .
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d------~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e--~ 83 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD------VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPD--M 83 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC------CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH--H
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCch--H
Confidence 34477788888999999999988887766543321 113567788899999999999998888888764321 1
Q ss_pred HHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cchh
Q 008585 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEV 311 (560)
Q Consensus 233 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~ 311 (560)
+ .-+++.+.+-|++.++.+|..|..+|+++. .++....+. +.+..++.+.+|.+|..|+.++.++.. +++.
T Consensus 84 ~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~l~-----~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~ 155 (591)
T 2vgl_B 84 A--IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEYLC-----EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM 155 (591)
T ss_dssp H--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHHHH-----HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred H--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHHHH-----HHHHHHcCCCChHHHHHHHHHHHHHHhhChhh
Confidence 1 124678888899999999999999999986 455555443 788999999999999999999999975 3442
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG 389 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~ 389 (560)
. .+.+.++.+..++.+++. .++..|+.+|.+++..++..+......+.+..|+..+.+ +..+...+.+++.++.
T Consensus 156 ~---~~~~~~~~l~~lL~d~d~-~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 156 V---EDQGFLDSLRDLIADSNP-MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP 231 (591)
T ss_dssp H---HHHHHHHHHHHTTSCSCH-HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC
T ss_pred c---ccccHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC
Confidence 2 235788999999998886 899999999999998665321000001224556665543 5567778888877775
Q ss_pred cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC----ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 008585 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT----SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465 (560)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~----~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL 465 (560)
.+... ...+++.+...+++.++.|+..|++++..+.. +++..+.+. ....+.|+.++. .++++|..|+.+|
T Consensus 232 ~~~~~---~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l 306 (591)
T 2vgl_B 232 KDDRE---AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNI 306 (591)
T ss_dssp CSHHH---HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred CChHH---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHH
Confidence 22111 13467788888888999999999999999974 344444332 345677887664 7889999999999
Q ss_pred HHhcC
Q 008585 466 SSLVT 470 (560)
Q Consensus 466 ~~L~~ 470 (560)
..+..
T Consensus 307 ~~i~~ 311 (591)
T 2vgl_B 307 NLIVQ 311 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99974
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.32 E-value=7.2e-11 Score=110.39 Aligned_cols=123 Identities=21% Similarity=0.241 Sum_probs=92.1
Q ss_pred CCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHH
Q 008585 195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI 274 (560)
Q Consensus 195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l 274 (560)
.+.++.|+++|+++++.+|..|+..|+.+.. .+.++.|+++|+++++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 3567888888888888888888888877653 2467888888888888888888888877742
Q ss_pred HhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (560)
Q Consensus 275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La 348 (560)
.+.++.|+.++.++++.++..++.+|.++.. .+.++.|+.++.+++. .++..++.+|+++.
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIG 140 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHHcC
Confidence 2455777788888888888888888877653 2467777787777765 78888888887774
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.27 E-value=1.1e-10 Score=108.25 Aligned_cols=182 Identities=21% Similarity=0.220 Sum_probs=155.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHH
Q 008585 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275 (560)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~ 275 (560)
+..+.++++|+++++.+|..|+.+|+.+.. .+.++.|+++|+++++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 568899999999999999999999998764 2468999999999999999999999998753
Q ss_pred hCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH
Q 008585 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355 (560)
Q Consensus 276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (560)
...++.|+.++.++++.++..++++|.++.. ..+++.++.++.+++. .++..++.+|+++.. +
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~--~--- 137 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD--E--- 137 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHTC--G---
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCC--H---
Confidence 2467889999999999999999999998754 3478999999988886 899999999999863 2
Q ss_pred HHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 356 RSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 356 ~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
..++.|..++.+ +.++..|+.+|+.+.. ...++.|..+++++++.++..|..+|.++.
T Consensus 138 ------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 ------RAVEPLIKALKDEDGWVRQSAADALGEIGG---------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 347788888876 4688999999999853 236888999999999999999999999875
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.25 E-value=1.7e-09 Score=117.98 Aligned_cols=288 Identities=10% Similarity=0.080 Sum_probs=189.0
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
+.....+..+++.+.+.|.-+.-.+..++..+++.... .+..+.+-|+++++.+|..|+++|+++... + +
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-~----~ 139 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-E----M 139 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-H----H
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-H----H
Confidence 34566677778889888888888888888777653222 467888889999999999999999999842 1 2
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-hh
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV 311 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~ 311 (560)
. ..+++.+.++|++.++.+|..|+.++.++.. +++... +.++.+..++.+.++.++..|+.+|..++... +.
T Consensus 140 ~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 140 C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 2 2468889999999999999999999999965 344322 56778888888999999999999999998753 33
Q ss_pred HHHHHhcCcHHHHHHHhhc---------------CCchhHHHHHHHHHHHHccCChhHHHHHHh----------------
Q 008585 312 RQMLAEEGIVSVMIKLLDC---------------GILLGSKEYAAECLQNLTASNENLRRSVVS---------------- 360 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~---------------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~---------------- 360 (560)
...+ ...++.++++|.+ .++ ..+...+.+|+.++..++...+.+.+
T Consensus 214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDP-FLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH-HHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCC-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence 2223 3567878777763 233 67888888888888765442211100
Q ss_pred ---------------------CCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHH
Q 008585 361 ---------------------EGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQ 417 (560)
Q Consensus 361 ---------------------~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~ 417 (560)
..++..|..++.+ +.++..|+.+|..++.. .+..+ ......++..+.+++..++
T Consensus 291 ~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~-~p~~~--~~~~~~i~~~l~d~d~~Ir 367 (618)
T 1w63_A 291 NAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT-DHNAV--QRHRSTIVDCLKDLDVSIK 367 (618)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH-HHHHH--GGGHHHHHHGGGSSCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh-CHHHH--HHHHHHHHHHccCCChhHH
Confidence 0123334444432 44555555555555531 01111 1234455566666666666
Q ss_pred HHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 418 QAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 418 ~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
..|..+|..++....... .++.|...+.+.+.+++..+..+++.++
T Consensus 368 ~~alelL~~l~~~~nv~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la 413 (618)
T 1w63_A 368 RRAMELSFALVNGNNIRG------MMKELLYFLDSCEPEFKADCASGIFLAA 413 (618)
T ss_dssp HHHHHHHHHHCCSSSTHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHH------HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 666666666664422211 2355555555566666777777777766
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.24 E-value=2.9e-10 Score=105.37 Aligned_cols=182 Identities=23% Similarity=0.188 Sum_probs=154.9
Q ss_pred CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHH
Q 008585 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA 316 (560)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~ 316 (560)
+..+.+++.|+++++.+|..|+.+|..+.. ...++.|+.++.++++.++..++.+|.++..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 467899999999999999999999998753 2457899999999999999999999988754
Q ss_pred hcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHH
Q 008585 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQE 394 (560)
Q Consensus 317 e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~ 394 (560)
..+++.++.++.++++ .++..++.+|+++.. + ..++.|..++.+ +.++..++.+|+.+..
T Consensus 75 -~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp -GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred -HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 3578999999998886 899999999999864 2 247788888876 4588999999999863
Q ss_pred HHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 395 ~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
...++.|..++.+.++.++..|+.+|+++.. ...++.|..++.++++.+|..|..+|..+-
T Consensus 137 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999953 235788889999999999999999999884
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.23 E-value=2.9e-09 Score=116.20 Aligned_cols=326 Identities=13% Similarity=0.072 Sum_probs=234.6
Q ss_pred hhchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585 152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
+...+.++-..+++++...|.+++..|..+...+... ..+....++++.+++...+..+--.+..++...+...
T Consensus 32 i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~ 105 (618)
T 1w63_A 32 IQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH 105 (618)
T ss_dssp HHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH
Confidence 3445666666777777777888877777665432211 1246667788888888998888888888887654211
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cch
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPE 310 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~ 310 (560)
. -++..+.+-|++.++.++..|+++|+++.. ++.... .++.+..++.+.+|.+|..|+.++.++.. +++
T Consensus 106 ~----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~~~~-----l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 106 L----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEMCRD-----LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp H----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred H----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence 1 147788888999999999999999999974 443333 34888899999999999999999999975 444
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc-----------------C
Q 008585 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-----------------G 373 (560)
Q Consensus 311 ~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~-----------------~ 373 (560)
.. .+.++.+..++.+.+. .++..|+.+|..++..++.....+ ...++.++.+|. +
T Consensus 176 ~v-----~~~~~~l~~lL~D~d~-~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~ 247 (618)
T 1w63_A 176 LM-----EMFLPATKNLLNEKNH-GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISD 247 (618)
T ss_dssp GG-----GGGGGGTTTSTTCCCH-HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred HH-----HHHHHHHHHHhCCCCH-hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence 33 2567778888888776 899999999999998765432222 245777776653 3
Q ss_pred CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc------CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHH
Q 008585 374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA------GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLI 447 (560)
Q Consensus 374 ~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv 447 (560)
+..+...+.+|+.++..+.. ....+++.|..++.. .+..+...|++++..+...++.+. .+++.|.
T Consensus 248 ~~~q~~il~~L~~l~~~~~~---~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~ 319 (618)
T 1w63_A 248 PFLQVRILRLLRILGRNDDD---SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILG 319 (618)
T ss_dssp HHHHHHHHHHHHHHTTTCHH---HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHH
Confidence 55678888999998873211 123455666666542 346889999999999876544332 3578899
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh
Q 008585 448 KLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK 515 (560)
Q Consensus 448 ~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~ 515 (560)
.++.+.++++|..|+.+|..++...+ ..+. .....++..+.+.+ ..++..++.++..++...
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~--~~~~~i~~~l~d~d-~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ--RHRSTIVDCLKDLD-VSIKRRAMELSFALVNGN 381 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG--GGHHHHHHGGGSSC-HHHHHHHHHHHHHHCCSS
T ss_pred HHHhCCCCchHHHHHHHHHHHHhhCH---HHHH--HHHHHHHHHccCCC-hhHHHHHHHHHHHHcccc
Confidence 99999999999999999999975432 2332 34567888888754 468999999999998754
No 54
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.23 E-value=3.4e-10 Score=128.40 Aligned_cols=370 Identities=14% Similarity=0.129 Sum_probs=235.1
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch-----
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC----- 229 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~----- 229 (560)
.++.+...++..+.+.+..++..|..++...++..........++.+...+.+.+..++..|+.++..++.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 304 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYEL 304 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345555666788899999999999999876553322222224567777888888899999999999998765311
Q ss_pred -------------HHHHHhCCCHHHHHHhhhc-------CCHHHHHHHHHHHHHhhCChh--hHHHHHhCCChHHHHHHh
Q 008585 230 -------------ENWLVSEGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAE--MARAIVGHGGVRPLIEIC 287 (560)
Q Consensus 230 -------------~~~l~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~La~~~~--~~~~l~~~g~i~~Lv~ll 287 (560)
-.... ..+++.++..|.. +++.++..+..+|..++.... ... ..++.+...+
T Consensus 305 ~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~-----~l~~~l~~~l 378 (861)
T 2bpt_A 305 AQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE-----PVLEFVEQNI 378 (861)
T ss_dssp HHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHT
T ss_pred hhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHc
Confidence 01111 3467788887764 245788899999999876321 111 2346666777
Q ss_pred ccCChHHHHHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH-HHHHhCCCH
Q 008585 288 QTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR-RSVVSEGGI 364 (560)
Q Consensus 288 ~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~-~~i~~~g~l 364 (560)
.+.++..|..++.++..++... +.-.... ..+++.++..+.++++ .+|..++++|++++..-...- ..-.-...+
T Consensus 379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l 456 (861)
T 2bpt_A 379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSL-QVKETTAWCIGRIADSVAESIDPQQHLPGVV 456 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHGGGSCTTTTHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH
Confidence 7889999999999999999642 2112222 3478888898888876 899999999999985311000 000001236
Q ss_pred HHHHHhccC-CccHHHHHHHHHHhhcc-c-c-HHHH--HhCCcHHHHHHHHhcCC--HHHHHHHHHHHHHHhCC--hhHH
Q 008585 365 RSLLAYLDG-PLPQESAVGALRNLVGS-V-S-QEVL--ISLGFFPRLVHVLKAGS--LGAQQAAASALCRVCTS--AEMK 434 (560)
Q Consensus 365 ~~L~~ll~~-~~~~~~a~~~L~nla~~-~-~-~~~l--~~~~~i~~Lv~lL~~~~--~~v~~~A~~aL~~La~~--~~~~ 434 (560)
+.++..+.+ +.++..++++|.+++.. . . ...+ .-..+++.|+..+.+.+ +.++..++.++..++.. .+..
T Consensus 457 ~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~ 536 (861)
T 2bpt_A 457 QACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536 (861)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH
Confidence 667777765 56788999999998861 1 0 0001 01234677778887543 78999999999999843 3333
Q ss_pred HHHHhcCCHHHHHHHHccC---------------CHHHHHHHHHHHHHhcCCC-hhhHHHhhhCCChHHHHhccCCCCch
Q 008585 435 KLVGEAGCTPLLIKLLEAK---------------PNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPSPQN 498 (560)
Q Consensus 435 ~~i~~~g~i~~Lv~ll~s~---------------~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~ 498 (560)
..+ ...++.+++.+... ...++..++.+|..++..- .....+.. ..++.++..+++.+.+
T Consensus 537 ~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~ 612 (861)
T 2bpt_A 537 ETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--MLMGLFFRLLEKKDSA 612 (861)
T ss_dssp HHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHHHHSTTGG
T ss_pred HHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHccCCCC
Confidence 333 23567777766521 3457888999999988432 22222222 3456677777765432
Q ss_pred hhHHHHHHHHHHhCCCh--hhHHHHHHcChhHHHHHhhccCc
Q 008585 499 TAKKYAVACLASLSPSK--KCKKLMISYGAIGYLKKLSEMDI 538 (560)
Q Consensus 499 ~~~~~a~~~L~~L~~~~--~~r~~i~~~g~i~~L~~L~~~~~ 538 (560)
.+++.++.++..++... .....+ ...++.|.+..+.++
T Consensus 613 ~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~ 652 (861)
T 2bpt_A 613 FIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVD 652 (861)
T ss_dssp GTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhcccc
Confidence 57778888887776432 222222 225566665554433
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.22 E-value=5.3e-10 Score=104.44 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=132.6
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
..++.|+..|+++++.++..|+..|..+.. .+.++.|+++|+++++.+|..|+.+|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 358899999999999999999999987632 2578999999999999999999999998863
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHH
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~ 313 (560)
.+.++.|+++|++.++.++..++++|.++.. ...++.|+.++.++++.++..++.+|.++..
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 3468999999999999999999999999854 2466889999999999999999999998854
Q ss_pred HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHc
Q 008585 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348 (560)
Q Consensus 314 ~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La 348 (560)
...++.|..++.++++ .++..++.+|+.+.
T Consensus 142 ----~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDG-WVRQSAADALGEIG 171 (211)
T ss_dssp ----GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhC
Confidence 3578999999988886 89999999999985
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.18 E-value=5.8e-10 Score=126.51 Aligned_cols=340 Identities=15% Similarity=0.146 Sum_probs=225.8
Q ss_pred hHHHHHHHHccC-------CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 008585 155 NTRELLARLQIG-------HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG 227 (560)
Q Consensus 155 ~i~~Ll~~L~~~-------~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~ 227 (560)
.++.++..+... +...+..+...|..++...++. +. ...++.+.+.+.+.++..|+.|+.+++.++...
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 400 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC
Confidence 455556666532 2356777888888877533211 11 124666777788888999999999999999754
Q ss_pred c--hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-------hhHHHHHhCCChHHHHHHhccCChHHHHHH
Q 008585 228 S--CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-------EMARAIVGHGGVRPLIEICQTGDSVSQAAA 298 (560)
Q Consensus 228 ~--~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-------~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a 298 (560)
. .-...+. .+++.+++.+++.++.+|..+++++.+++..- +... ..++.++..+.+. +.++..+
T Consensus 401 ~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-----~~l~~l~~~l~~~-~~v~~~a 473 (861)
T 2bpt_A 401 DKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP-----GVVQACLIGLQDH-PKVATNC 473 (861)
T ss_dssp CHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH-----HHHHHHHHHHTSC-HHHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH-----HHHHHHHHHhccC-hHHHHHH
Confidence 2 1111122 46888999999999999999999999987531 1122 2357788888775 8999999
Q ss_pred HHHHHHhcCC------chhHHHHHhcCcHHHHHHHhhcCCc-hhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc
Q 008585 299 ACTLKNISAV------PEVRQMLAEEGIVSVMIKLLDCGIL-LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL 371 (560)
Q Consensus 299 ~~aL~nLa~~------~~~~~~i~e~g~v~~L~~lL~~~~~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll 371 (560)
+++|.+++.. +.....+ ..+++.++.++.+.+. ..++..++.+++.++...+......+. ..++.++..+
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l 550 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKL 550 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHH
Confidence 9999998742 1222222 3467888888875431 378999999999998743321111111 2344455544
Q ss_pred cC-----------------CccHHHHHHHHHHhhc--cccHHHHHhCCcHHHHHHHHhcCCH-HHHHHHHHHHHHHhCC-
Q 008585 372 DG-----------------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSL-GAQQAAASALCRVCTS- 430 (560)
Q Consensus 372 ~~-----------------~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~~Lv~lL~~~~~-~v~~~A~~aL~~La~~- 430 (560)
.+ ..++..++.+|.+++. ...... .-..+++.++..++..+. .+++.+..++..++..
T Consensus 551 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 551 GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL 629 (861)
T ss_dssp HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH
Confidence 31 2356688888888886 211000 112457777888887766 8999999999999854
Q ss_pred -hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCC-chhhHHHHHHH
Q 008585 431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSP-QNTAKKYAVAC 507 (560)
Q Consensus 431 -~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~-~~~~~~~a~~~ 507 (560)
.+...++ ...+|.|.+.+...+..++..+..++..++.. ......++. ..++.++..+.+.+ +..++..++.+
T Consensus 630 ~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~ 705 (861)
T 2bpt_A 630 GKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSV 705 (861)
T ss_dssp GGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred hhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH--HHHHHHHHHhCCccccHhhhHHHHHH
Confidence 4455554 33789999999888888999999999999833 223333332 44566777776642 34688889998
Q ss_pred HHHhCC
Q 008585 508 LASLSP 513 (560)
Q Consensus 508 L~~L~~ 513 (560)
+..++.
T Consensus 706 l~~l~~ 711 (861)
T 2bpt_A 706 FGDIAS 711 (861)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.10 E-value=2.4e-09 Score=121.62 Aligned_cols=347 Identities=15% Similarity=0.114 Sum_probs=228.5
Q ss_pred chHHHHHHHHccC--CHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc
Q 008585 154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~ 228 (560)
..++.++..+.++ ++..+..++..|..++..- ++.... .-...++.+.+.+.++ +..+|..|+.++..+...-.
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888 8899999999999998753 221110 1123567778888876 68999999999999875421
Q ss_pred -h-HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585 229 -C-ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (560)
Q Consensus 229 -~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (560)
. .........++.+...+.+.+..++..++.+|..+... ++.-........++.++..+.+.++.++..++..+.++
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1 11111112567777778888999999999999999753 33222233346778888888888899999999998888
Q ss_pred cCCch----------------------hHHHHHhcCcHHHHHHHhhc-------CCchhHHHHHHHHHHHHccCChhHHH
Q 008585 306 SAVPE----------------------VRQMLAEEGIVSVMIKLLDC-------GILLGSKEYAAECLQNLTASNENLRR 356 (560)
Q Consensus 306 a~~~~----------------------~~~~i~e~g~v~~L~~lL~~-------~~~~~v~~~a~~~L~~La~~~~~~~~ 356 (560)
+.... ..+... ...++.+++.+.. ++. .++..+..+|..++...+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~-~~r~~a~~~l~~l~~~~~~--- 361 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDW-NPCKAAGVCLMLLATCCED--- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCC-CHHHHHHHHHHHHHHHHGG---
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhccccccccccc-HHHHHHHHHHHHHHHHCcH---
Confidence 75320 000011 3356777777752 233 6899999999998863221
Q ss_pred HHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-h
Q 008585 357 SVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-A 431 (560)
Q Consensus 357 ~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~ 431 (560)
.++. ..++.+...+.+ +.++..++.++++++.....+.+ .-..+++.++..+++.++.++..|++++++++.. +
T Consensus 362 ~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 362 DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 1111 234555556655 45789999999999973221111 2245788899999999999999999999999853 2
Q ss_pred h---HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh---------------hhHHHhhhCCChHHHHhccC
Q 008585 432 E---MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ---------------NCREVKRDDKSVPNLVQLLD 493 (560)
Q Consensus 432 ~---~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~---------------~~~~~~~~~~~v~~Lv~lL~ 493 (560)
. ....+ ...++.|+..+.+. +.++..++.+|.+++.... ....++. ..++.|++.+.
T Consensus 441 ~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~il~~L~~~l~ 515 (876)
T 1qgr_A 441 EAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE--LIVQKLLETTD 515 (876)
T ss_dssp GGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH--HHHHHHHHHTT
T ss_pred hhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHH--HHHHHHHHHHh
Confidence 1 11222 24577888888764 8899999999999983311 1112221 34577777776
Q ss_pred CCC--chhhHHHHHHHHHHhC
Q 008585 494 PSP--QNTAKKYAVACLASLS 512 (560)
Q Consensus 494 ~~~--~~~~~~~a~~~L~~L~ 512 (560)
..+ ...++..++.++..++
T Consensus 516 ~~~~~~~~~r~~~~~~l~~l~ 536 (876)
T 1qgr_A 516 RPDGHQNNLRSSAYESLMEIV 536 (876)
T ss_dssp SCSSCSTTHHHHHHHHHHHHH
T ss_pred CcCcchhhHHHHHHHHHHHHH
Confidence 542 2345656666666554
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.10 E-value=3.2e-10 Score=118.87 Aligned_cols=347 Identities=13% Similarity=0.107 Sum_probs=224.1
Q ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHHHhhChHHHH--------HH---hhCCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008585 156 TRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVL--------AV---MGRSNIAALVQLLTATSPRIREKTVTVICS 222 (560)
Q Consensus 156 i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~--------~i---~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~ 222 (560)
+..|+..+..+ ++.+|..|+..|.++......... .+ .....-..|+..|.++++.+ ..++.+++.
T Consensus 37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ 115 (462)
T 1ibr_B 37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAG 115 (462)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHH
Confidence 44555666554 578888888899888754311100 00 01123445778888877777 888999999
Q ss_pred HhcCCchHHHHHhCCCHHHHHHhhhcC--CHHHHHHHHHHHHHhhCC--hhhHHHHHhCCChHHHHHHhccC--ChHHHH
Q 008585 223 LAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTG--DSVSQA 296 (560)
Q Consensus 223 La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~--~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~ 296 (560)
++....... .-.+.++.|+..+.++ ++.+++.++.+|..++.+ ++...... ...++.++..+.+. ++.+|.
T Consensus 116 ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~ 192 (462)
T 1ibr_B 116 IACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKL 192 (462)
T ss_dssp HHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHH
T ss_pred HHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHH
Confidence 987531110 0146789999999998 899999999999999753 21111110 12457788888887 789999
Q ss_pred HHHHHHHHhcCC-chhH-HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-
Q 008585 297 AAACTLKNISAV-PEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG- 373 (560)
Q Consensus 297 ~a~~aL~nLa~~-~~~~-~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~- 373 (560)
.++.++.++... ++.- ......-.++.+...+.+++. .++..++.+|..++...+..-...+..+.++.++..+.+
T Consensus 193 ~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (462)
T 1ibr_B 193 AATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD 271 (462)
T ss_dssp HHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999997642 1111 011111146666666766665 899999999999987443211111111445666666655
Q ss_pred -CccHHHHHHHHHHhhccc-cHHH------------------HH---hCCcHHHHHHHHhc-------CCHHHHHHHHHH
Q 008585 374 -PLPQESAVGALRNLVGSV-SQEV------------------LI---SLGFFPRLVHVLKA-------GSLGAQQAAASA 423 (560)
Q Consensus 374 -~~~~~~a~~~L~nla~~~-~~~~------------------l~---~~~~i~~Lv~lL~~-------~~~~v~~~A~~a 423 (560)
+.++..++.++.+++... .... +. -..+++.++..+.. .+..++..|+.+
T Consensus 272 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~ 351 (462)
T 1ibr_B 272 IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHH
Confidence 567889999998887521 0000 00 02345566666643 235789999999
Q ss_pred HHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh-h-hHHHhhhCCChHHHHhccCCCCchhhH
Q 008585 424 LCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ-N-CREVKRDDKSVPNLVQLLDPSPQNTAK 501 (560)
Q Consensus 424 L~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~-~-~~~~~~~~~~v~~Lv~lL~~~~~~~~~ 501 (560)
|..++..-. +.+. ..+++.+...+.+.+..+|..|+.+|..++.+.. . ....+ ...++.++..|.+.. ..++
T Consensus 352 L~~l~~~~~--~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~-~~Vr 425 (462)
T 1ibr_B 352 LMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPS-VVVR 425 (462)
T ss_dssp HHHHHHHTT--TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSC-HHHH
T ss_pred HHHHHHhcc--HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCC-HHHH
Confidence 999884311 1111 2457788888888999999999999999996432 1 22222 356788999998764 4689
Q ss_pred HHHHHHHHHhCC
Q 008585 502 KYAVACLASLSP 513 (560)
Q Consensus 502 ~~a~~~L~~L~~ 513 (560)
..++.++..++.
T Consensus 426 ~~a~~~l~~~~~ 437 (462)
T 1ibr_B 426 DTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 59
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.09 E-value=1.7e-07 Score=101.88 Aligned_cols=356 Identities=13% Similarity=0.111 Sum_probs=239.5
Q ss_pred hchHHHHHHHHcc---CCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 008585 153 HGNTRELLARLQI---GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC 229 (560)
Q Consensus 153 ~~~i~~Ll~~L~~---~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~ 229 (560)
...+.++-..++. .+...+.+++..+.-+..-+.+ -..+....++++.+++...+..+--++..++...+.
T Consensus 34 ~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e 107 (621)
T 2vgl_A 34 NKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD------IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSE 107 (621)
T ss_dssp HHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC------CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcH
Confidence 4445555566653 3677888888877776543321 124577788899999999999999999988876542
Q ss_pred HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh--ccCChHHHHHHHHHHHHhcC
Q 008585 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC--QTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll--~~~~~~~~~~a~~aL~nLa~ 307 (560)
.-.+ ++..+.+=|++.++.++..|..+|+++.. ++....+ ++.+.+.+ .+.+|.+|..|+.++.++..
T Consensus 108 ~~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~~~~l-----~~~v~~~l~~~d~~~~VRK~A~~al~kl~~ 177 (621)
T 2vgl_A 108 LIRL----INNAIKNDLASRNPTFMGLALHCIANVGS-REMAEAF-----AGEIPKILVAGDTMDSVKQSAALCLLRLYR 177 (621)
T ss_dssp HHHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHHHHHH-----TTHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 1111 36677778889999999999999999954 5544444 48888999 88999999999999999875
Q ss_pred -CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHH----Hhcc----------
Q 008585 308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL----AYLD---------- 372 (560)
Q Consensus 308 -~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~----~ll~---------- 372 (560)
+++... ..+.++.+.++|.+.+. .++.+|+.++..++..++.... ..++.++ +++.
T Consensus 178 ~~p~~~~---~~~~~~~l~~lL~d~d~-~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~ 248 (621)
T 2vgl_A 178 TSPDLVP---MGDWTSRVVHLLNDQHL-GVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDYT 248 (621)
T ss_dssp HCGGGCC---CCSCHHHHHHHTTCSCH-HHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTTE
T ss_pred hChhhcC---chhHHHHHHHHhCCCCc-cHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccchh
Confidence 333221 24789999999988776 8999999999999986654211 1233333 3321
Q ss_pred -----CCccHHHHHHHHHHhhccccH---HHHHhCCcHHHHHHHH---------hcCC--HHHHHHHHHHHHHHhCChhH
Q 008585 373 -----GPLPQESAVGALRNLVGSVSQ---EVLISLGFFPRLVHVL---------KAGS--LGAQQAAASALCRVCTSAEM 433 (560)
Q Consensus 373 -----~~~~~~~a~~~L~nla~~~~~---~~l~~~~~i~~Lv~lL---------~~~~--~~v~~~A~~aL~~La~~~~~ 433 (560)
+|..|...+..|..++..+.. +.+. .++..++..+ ++.+ ..|..+|+.++..+...++.
T Consensus 249 ~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~ 326 (621)
T 2vgl_A 249 YYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNL 326 (621)
T ss_dssp ETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHH
Confidence 234677788888887763222 1111 1334444332 2223 38888999999999765555
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccC-CCCchhhHHHHHHHHHHhC
Q 008585 434 KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLD-PSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 434 ~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~~~~~~a~~~L~~L~ 512 (560)
.+. ++..|..++.+.++++|..|+.+|..++...+. ..++. .....++..|. +. +..++..++.++..++
T Consensus 327 ~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 327 LVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTER-DVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCC-CHhHHHHHHHHHHHHc
Confidence 443 377888999889999999999999999865443 22343 45677888887 54 4568999999999998
Q ss_pred CChhhHHHHHHcChhHHHHHhhccCchhHHHHHHHHh
Q 008585 513 PSKKCKKLMISYGAIGYLKKLSEMDIPGARKLLERLE 549 (560)
Q Consensus 513 ~~~~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l~ 549 (560)
.. ++-..++. ....+ +.+.+++-..+++.++.
T Consensus 398 ~~-~Nv~~Iv~-eL~~y---l~~~d~~~~~~~v~~I~ 429 (621)
T 2vgl_A 398 DR-SNAQQIVA-EMLSY---LETADYSIREEIVLKVA 429 (621)
T ss_dssp CH-HHHHHHHH-HHHHH---HHHCCHHHHHHHHHHHH
T ss_pred Ch-hhHHHHHH-HHHHH---HHhcCHHHHHHHHHHHH
Confidence 54 34444433 12222 22344444555555554
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.06 E-value=7.1e-09 Score=117.76 Aligned_cols=369 Identities=14% Similarity=0.082 Sum_probs=222.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc------
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS------ 228 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~------ 228 (560)
.++.+...++..+.+.+..++..|..++...++..........++.++..+.+.++.++..++..+..++....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 297 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 34455556677788899999999999998766543333444678888888888889999999999988875420
Q ss_pred -------------hHHHH--HhCCCHHHHHHhhhc-------CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHH
Q 008585 229 -------------CENWL--VSEGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI 286 (560)
Q Consensus 229 -------------~~~~l--~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~l 286 (560)
....+ .-...++.+++.|.. +++.+|..+..+|..++..... .+. ...++.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~ 374 (876)
T 1qgr_A 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEH 374 (876)
T ss_dssp HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHH
T ss_pred ccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHH
Confidence 00000 012356777777752 3567888999999998653221 111 1234666677
Q ss_pred hccCChHHHHHHHHHHHHhcCCc--hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH---HHHHHhC
Q 008585 287 CQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL---RRSVVSE 361 (560)
Q Consensus 287 l~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~---~~~i~~~ 361 (560)
+.+.++.+|..++.+|.+++... +...... ..+++.++..+.+++. .+|..|+++|++++...+.. ...+ .
T Consensus 375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~l--~ 450 (876)
T 1qgr_A 375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSV-VVRDTAAWTVGRICELLPEAAINDVYL--A 450 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHCGGGTSSTTTH--H
T ss_pred ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHhCchhcccHHHH--H
Confidence 78889999999999999998642 2222222 4588999999988886 89999999999998743220 0000 1
Q ss_pred CCHHHHHHhccC-CccHHHHHHHHHHhhcccc-------------HHHH--HhCCcHHHHHHHHhcC---CHHHHHHHHH
Q 008585 362 GGIRSLLAYLDG-PLPQESAVGALRNLVGSVS-------------QEVL--ISLGFFPRLVHVLKAG---SLGAQQAAAS 422 (560)
Q Consensus 362 g~l~~L~~ll~~-~~~~~~a~~~L~nla~~~~-------------~~~l--~~~~~i~~Lv~lL~~~---~~~v~~~A~~ 422 (560)
..++.++..+.+ +.++..++++|.+++.... ...+ .-..+++.|+..+... +..++..+..
T Consensus 451 ~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~ 530 (876)
T 1qgr_A 451 PLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHH
Confidence 235666666655 5678888888888875100 0000 0012344444444332 1234444444
Q ss_pred --------------------------------------------------------HHHHHhCC---hhHHHHHHhcCCH
Q 008585 423 --------------------------------------------------------ALCRVCTS---AEMKKLVGEAGCT 443 (560)
Q Consensus 423 --------------------------------------------------------aL~~La~~---~~~~~~i~~~g~i 443 (560)
++..++.. .+....+ ...+
T Consensus 531 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~ 608 (876)
T 1qgr_A 531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVM 608 (876)
T ss_dssp HHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHH
T ss_pred HHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHH
Confidence 44444322 1111111 1246
Q ss_pred HHHHHHHccCC--HHHHHHHHHHHHHhcCC-ChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh--hhH
Q 008585 444 PLLIKLLEAKP--NSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK--KCK 518 (560)
Q Consensus 444 ~~Lv~ll~s~~--~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~--~~r 518 (560)
+.+++++.+.+ ..+++.++.++..++.. ......++. ..++.+...|.+.....++..++.++..++..- ..+
T Consensus 609 ~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 686 (876)
T 1qgr_A 609 ASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME--AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII 686 (876)
T ss_dssp HHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67777776654 36899999999999843 222333332 345777777776534457888888888776422 121
Q ss_pred HHHHHcChhHHHHHhhcc
Q 008585 519 KLMISYGAIGYLKKLSEM 536 (560)
Q Consensus 519 ~~i~~~g~i~~L~~L~~~ 536 (560)
.. -...++.|.+....
T Consensus 687 ~~--~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 687 PF--CDEVMQLLLENLGN 702 (876)
T ss_dssp HH--HHHHHHHHHHHHTC
T ss_pred hh--HHHHHHHHHHHhCC
Confidence 11 13455555555443
No 61
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.99 E-value=2.6e-09 Score=117.82 Aligned_cols=192 Identities=14% Similarity=0.176 Sum_probs=153.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHH-HhhhcCCHHHHHHHHHHHHHhhCC--hhhHHH
Q 008585 197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMS--AEMARA 273 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~La~~--~~~~~~ 273 (560)
.+.++++.|++++++.|..|+.+|.+|+.+++.+..+...|++.+++ .+|.+.+..++..|+++|++|+.+ ++.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 45667788999999999999999999999888999999999988765 578889999999999999999864 678889
Q ss_pred HHhCCChHHHHHHhccCC---------------------hHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcC
Q 008585 274 IVGHGGVRPLIEICQTGD---------------------SVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCG 331 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~---------------------~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~ 331 (560)
++..|++++|..+++... +.+...++.+|++||. +++....+.+.+.++.++.++.+.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 999999999999986311 1233467889999986 557777888899999999988543
Q ss_pred C--chhHHHHHHHHHHHHccCChhHHHHHHhCCCHH---HHHHhccC-CccHHHHHHHHHHhh
Q 008585 332 I--LLGSKEYAAECLQNLTASNENLRRSVVSEGGIR---SLLAYLDG-PLPQESAVGALRNLV 388 (560)
Q Consensus 332 ~--~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~---~L~~ll~~-~~~~~~a~~~L~nla 388 (560)
+ +.+++..++.+|.+++.+++...+.+.+.+... .+..+..+ ...+..+++.|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 2 347999999999999999998888888766432 23333333 445777888888874
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.97 E-value=7.9e-09 Score=122.00 Aligned_cols=343 Identities=15% Similarity=0.128 Sum_probs=228.8
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
..+..++..+.+.+.+.|..|...|.+....+......-.....++.|++.|.+.++.+|..|+.+|+.++..-.. ..+
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 4578899999999999999999999887654311000000113577888899988999999999999999865432 111
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC--hhh----HHHHHhCCChHHHHHHhc-cCChHHHHHHHHHHHHhc
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEM----ARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNIS 306 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~--~~~----~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa 306 (560)
..+++.++..+.+++..+|..++.+|..++.. ++. ...-.....++.|+..+. ++++.++..++.+|.+++
T Consensus 85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 23577888888888889999999999998643 220 001112245688999998 488999999999999987
Q ss_pred C--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC---CccHHHHH
Q 008585 307 A--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAV 381 (560)
Q Consensus 307 ~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~---~~~~~~a~ 381 (560)
. .+.....+ ...++.++..+.+++. .+|..++.+|..++...+. .+ -...++.++..+.+ +..+..++
T Consensus 163 ~~~~~~l~~~~--~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 163 SRQGGLLVNFH--PSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHTCSSCTTTH--HHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHhHhHHHHHH--HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHH
Confidence 3 11111111 3467778888888776 8999999999999975432 11 22347777777743 35677788
Q ss_pred HHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc-----
Q 008585 382 GALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA----- 452 (560)
Q Consensus 382 ~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s----- 452 (560)
.+++.++..... .+ .-..+++.++..+.+.++.++..+..++..++.. .+....+ ...++.+++.+..
T Consensus 236 ~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCC
Confidence 888888862111 11 1246789999999888899999999999998753 2333322 1234444433321
Q ss_pred --------------------------------CCHHHHHHHHHHHHHhcCCCh-hhHHHhhhCCChHHHHhccCCCCchh
Q 008585 453 --------------------------------KPNSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNT 499 (560)
Q Consensus 453 --------------------------------~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~ 499 (560)
....+|..|+.+|..++...+ ....++ ...++.++..+.+.+ +.
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~-~~ 389 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKERE-EN 389 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSS-SH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCc-hH
Confidence 123478999999999986433 234444 366788888886553 45
Q ss_pred hHHHHHHHHHHhC
Q 008585 500 AKKYAVACLASLS 512 (560)
Q Consensus 500 ~~~~a~~~L~~L~ 512 (560)
++..++.++..+.
T Consensus 390 Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 390 VKADVFHAYLSLL 402 (1230)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665544
No 63
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.96 E-value=7.9e-09 Score=108.15 Aligned_cols=272 Identities=13% Similarity=0.107 Sum_probs=183.8
Q ss_pred chHHHHHHHHccC--CHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCc
Q 008585 154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS 228 (560)
Q Consensus 154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~ 228 (560)
..++.++..++++ ++..+..++..|..++.+. ++...... ...++.++.+++++ ++.+|..|++++..+...-+
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4578888899888 8999999999999998754 22111111 13678888899887 79999999999998764321
Q ss_pred --hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585 229 --CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (560)
Q Consensus 229 --~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (560)
........-+++.+...+.+.+..++..++++|..++... +.-......+.++.++..+++.++.++..++..+.++
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 0001111114566667778889999999999999997532 2111111115567777888888999999999988888
Q ss_pred cCCchh------------------HHHHHh---cCcHHHHHHHhhcC------CchhHHHHHHHHHHHHccCChhHHHHH
Q 008585 306 SAVPEV------------------RQMLAE---EGIVSVMIKLLDCG------ILLGSKEYAAECLQNLTASNENLRRSV 358 (560)
Q Consensus 306 a~~~~~------------------~~~i~e---~g~v~~L~~lL~~~------~~~~v~~~a~~~L~~La~~~~~~~~~i 358 (560)
+..... ...+.+ ...+|.+++.+.+. ++..++..|..+|..++...+. .+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~ 363 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI 363 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---TH
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HH
Confidence 753210 000111 33567777777432 1126899999999999874331 11
Q ss_pred HhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHH--HhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585 359 VSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 359 ~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~ 430 (560)
. ...++.+...+.+ ..++..++.+|+.++.....+.+ .-..+++.++..|++.++.|+..|+++|++++..
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 1 1235666667766 45789999999999972111111 1256799999999999999999999999999853
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.92 E-value=9e-08 Score=104.15 Aligned_cols=324 Identities=14% Similarity=0.151 Sum_probs=219.4
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHH
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL 233 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l 233 (560)
+.....+..+++.+.+.|.-+.-.+..++..+++.... .+..+.+=|+++++.++-.|+++|+++... + +
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-e----~ 143 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSR-E----M 143 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-H----H
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-H----H
Confidence 34667778888999999988888888888777654322 356777778899999999999999999652 2 2
Q ss_pred HhCCCHHHHHHhh--hcCCHHHHHHHHHHHHHhhC-ChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-Cc
Q 008585 234 VSEGVLPPLIRLV--ESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP 309 (560)
Q Consensus 234 ~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~La~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~ 309 (560)
. ...++.+.+.| .+.++.+|..|+.++.++.. +++... ..+.++.+.+++.+.++.++..|+.++..++. ++
T Consensus 144 ~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 144 A-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp H-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred H-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 2 23678899999 88899999999999999965 233221 24788999999999999999999999999975 32
Q ss_pred hhHHHHHhcCcHHHHH----HHhhcC-C-----------chhHHHHHHHHHHHHccC-ChhHHHHHHhCCCHHHHHHhcc
Q 008585 310 EVRQMLAEEGIVSVMI----KLLDCG-I-----------LLGSKEYAAECLQNLTAS-NENLRRSVVSEGGIRSLLAYLD 372 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~----~lL~~~-~-----------~~~v~~~a~~~L~~La~~-~~~~~~~i~~~g~l~~L~~ll~ 372 (560)
+. + ...++.++ +++..+ . +...|...+.+|..++.. ++..++.+.+ .+..++..+.
T Consensus 220 ~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~ 292 (621)
T 2vgl_A 220 EE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ 292 (621)
T ss_dssp HH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred HH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence 21 1 12344444 444322 1 236888888888888763 3454444432 2333333221
Q ss_pred C-C------------ccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHh
Q 008585 373 G-P------------LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGE 439 (560)
Q Consensus 373 ~-~------------~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~ 439 (560)
+ + .+...|+.++..+.. ..+.+ ..++..|..+|.+.++.+|..++.+|..++........+
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~~~--~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-- 366 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDS--EPNLL--VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-- 366 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHCC--CHHHH--HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcCC--cHHHH--HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--
Confidence 1 2 445566666666643 22111 235778888888889999999999999998653212233
Q ss_pred cCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 440 AGCTPLLIKLLE-AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 440 ~g~i~~Lv~ll~-s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
....+.++..+. +.+..++..++..|..++ ++.|...++ ..|...+...+ ...+..++..+..++
T Consensus 367 ~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~-~~~Nv~~Iv------~eL~~yl~~~d-~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 367 KTHIETVINALKTERDVSVRQRAVDLLYAMC-DRSNAQQIV------AEMLSYLETAD-YSIREEIVLKVAILA 432 (621)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC-CHHHHHHHH------HHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc-ChhhHHHHH------HHHHHHHHhcC-HHHHHHHHHHHHHHH
Confidence 345777888887 888899999999999996 445555544 44555554443 235555565555554
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.91 E-value=6.2e-09 Score=114.78 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=149.9
Q ss_pred CHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHH-HHhccCChHHHHHHHHHHHHhcC--CchhHHH
Q 008585 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISA--VPEVRQM 314 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~ 314 (560)
.+.++++.|++.++..|..|+++|.+|+.++..+..+...|++..++ .++.+.+.+++..|+++|+||+. ..+++..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 46677888999999999999999999999999999999999998865 46888999999999999999984 5689999
Q ss_pred HHhcCcHHHHHHHhhcCCc--------------------hhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-
Q 008585 315 LAEEGIVSVMIKLLDCGIL--------------------LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG- 373 (560)
Q Consensus 315 i~e~g~v~~L~~lL~~~~~--------------------~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~- 373 (560)
+...|+++.|..++++... ..+..+++.+|++|+..++.....+...++++.++..+.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 9999999999999863110 0244578899999998888877888889999999998843
Q ss_pred ----CccHHHHHHHHHHhhc--cccHHHHHhCCcHH--HHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 374 ----PLPQESAVGALRNLVG--SVSQEVLISLGFFP--RLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 374 ----~~~~~~a~~~L~nla~--~~~~~~l~~~~~i~--~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
.+++..++.+|.+++. ....+.+.+.+... .++..+...+...+..++..|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 3578899999999998 24445566655422 2222233344455778888888873
No 66
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.83 E-value=7.6e-07 Score=90.78 Aligned_cols=313 Identities=15% Similarity=0.129 Sum_probs=206.0
Q ss_pred chHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhCh---HHHHHHhhCCC-HHHHHH-hhcCCCHHHHHHHHHHHHHHhcCC
Q 008585 154 GNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDE---KNVLAVMGRSN-IAALVQ-LLTATSPRIREKTVTVICSLAESG 227 (560)
Q Consensus 154 ~~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~---~~~~~i~~~g~-v~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~ 227 (560)
..+..++..|+ +.+.+.....+.-+.+++.+++ .....+.+... ...+.. .+..+++-....+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 34677888886 5667788888888889988776 44444444333 222333 344444666677777767765332
Q ss_pred ch----HHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhCChhhHHHHHhCCC--hHHHHHHhcc-----------
Q 008585 228 SC----ENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGG--VRPLIEICQT----------- 289 (560)
Q Consensus 228 ~~----~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~--i~~Lv~ll~~----------- 289 (560)
.. ...+... +-++..|.. ++...+..++.+|..|...++.+..+.+.++ ++.++.+++.
T Consensus 157 ~~~~~~l~~l~~~---~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 157 LHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CccHhHHHHHhhh---HHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 11 1111111 034455555 2455677899999999999999999987543 6666655431
Q ss_pred ----C--ChHHHHHHHHHHHHhcCCchhHHHHHhcCcH--HHHHHHhhcCCchhHHHHHHHHHHHHccCCh-----hHHH
Q 008585 290 ----G--DSVSQAAAACTLKNISAVPEVRQMLAEEGIV--SVMIKLLDCGILLGSKEYAAECLQNLTASNE-----NLRR 356 (560)
Q Consensus 290 ----~--~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v--~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~-----~~~~ 356 (560)
+ ...++..++.++|-|+.+++..+.+...+.. +.++.+++....+.+.+-++.+|.|+...++ ...+
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 1 2456799999999999999999999887754 6677778776656899999999999998652 1223
Q ss_pred HHHhCCCHHHHHHhccC-----CccH-------HHHHHHHHHhhc-cccHH----------------H--------HHhC
Q 008585 357 SVVSEGGIRSLLAYLDG-----PLPQ-------ESAVGALRNLVG-SVSQE----------------V--------LISL 399 (560)
Q Consensus 357 ~i~~~g~l~~L~~ll~~-----~~~~-------~~a~~~L~nla~-~~~~~----------------~--------l~~~ 399 (560)
.++..++ .++++.|.. +++. +.--..+..++. .+... . +.+.
T Consensus 314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~ 392 (480)
T 1ho8_A 314 LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD 392 (480)
T ss_dssp HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence 3433444 445555533 2211 111111112221 11111 1 1122
Q ss_pred --CcHHHHHHHHhc----------CCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 008585 400 --GFFPRLVHVLKA----------GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466 (560)
Q Consensus 400 --~~i~~Lv~lL~~----------~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~ 466 (560)
..+..|+++|.+ .++.+...||.=|+.++++ |+.+..+-+.|+-..+++++.+++++||..|+.|+.
T Consensus 393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 347889999973 3688889999999999965 899998888899999999999999999999999998
Q ss_pred HhcC
Q 008585 467 SLVT 470 (560)
Q Consensus 467 ~L~~ 470 (560)
.+..
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 67
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.73 E-value=7.4e-08 Score=113.72 Aligned_cols=340 Identities=11% Similarity=0.092 Sum_probs=222.2
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchH--
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-- 230 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~-- 230 (560)
...++.++..|...++++|..|+..|..++...+.. .+ ...++.|+..+.++++.+|..|+.+|+.++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 455777888888889999999999999998754431 11 135778888888888899999999999998643311
Q ss_pred ----HHHHhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCC--h---hhHHHHHhCCChHHHHHHhccCChHHHHHHHH
Q 008585 231 ----NWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMS--A---EMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300 (560)
Q Consensus 231 ----~~l~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~--~---~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~ 300 (560)
..-.-..++|.|++.+. ++++.++..++.++..++.. . +... ..++.++..+.++++.+|..|+.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~-----~ll~~l~~~L~~~~~~vR~~a~~ 197 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP-----SILTCLLPQLTSPRLAVRKRTII 197 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH-----HHHHHHGGGGGCSSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH-----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 11112347899999998 47889999999999998632 1 1112 23467777788888999999999
Q ss_pred HHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH--hCCCHHHHHHhccC--Ccc
Q 008585 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV--SEGGIRSLLAYLDG--PLP 376 (560)
Q Consensus 301 aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~--~~g~l~~L~~ll~~--~~~ 376 (560)
+|..++...+. .+ -...++.++..+.+.++..++..++.++..++...+. .+. -...++.++..+.+ +.+
T Consensus 198 al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~v 271 (1230)
T 1u6g_C 198 ALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDEL 271 (1230)
T ss_dssp HHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred HHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHH
Confidence 99999864321 12 2346888888887654325778889999988864322 111 13457777887754 678
Q ss_pred HHHHHHHHHHhhc--c-ccHHHHHhCCcHHHHHHHHhc-------------------------------------CCHHH
Q 008585 377 QESAVGALRNLVG--S-VSQEVLISLGFFPRLVHVLKA-------------------------------------GSLGA 416 (560)
Q Consensus 377 ~~~a~~~L~nla~--~-~~~~~l~~~~~i~~Lv~lL~~-------------------------------------~~~~v 416 (560)
+..++.++..++. . .....+ ..+++.++..+.. ....+
T Consensus 272 R~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v 349 (1230)
T 1u6g_C 272 REYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV 349 (1230)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHH
T ss_pred HHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHH
Confidence 9999999998886 2 211110 1223333333221 11357
Q ss_pred HHHHHHHHHHHhCC-hh-HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh----------------hhHHH
Q 008585 417 QQAAASALCRVCTS-AE-MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ----------------NCREV 478 (560)
Q Consensus 417 ~~~A~~aL~~La~~-~~-~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~----------------~~~~~ 478 (560)
+..|+.++..++.. ++ ....+ ...++.++..+.+.++.+|..+..++..+...-. .+...
T Consensus 350 R~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (1230)
T 1u6g_C 350 RRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 427 (1230)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHH
Confidence 88999999998864 32 33333 4568888888888889999999999888763100 11111
Q ss_pred hh--hCCChHHHHhccCCCCchhhHHHHHHHHHHhC
Q 008585 479 KR--DDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512 (560)
Q Consensus 479 ~~--~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~ 512 (560)
+. -...++.+.+.+.+.++ .++..++.++..++
T Consensus 428 ~~~~l~~ll~~l~~~l~~~~~-~vr~~~~~~L~~l~ 462 (1230)
T 1u6g_C 428 LQSQVPNIVKALHKQMKEKSV-KTRQCCFNMLTELV 462 (1230)
T ss_dssp HHHHTTHHHHHHHHHTTCSCH-HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhccCCH-HHHHHHHHHHHHHH
Confidence 11 01234555566776543 45666776666554
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.61 E-value=1.3e-05 Score=89.79 Aligned_cols=369 Identities=14% Similarity=0.156 Sum_probs=244.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc----hH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS----CE 230 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~ 230 (560)
.+.+++..+...+...+..++..+..+...+... ..+..+.+..|.+.++..... +.|+.++..|+.... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 3555777777766666778888898887643211 111125567777777665333 999999999996542 33
Q ss_pred HHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhC--ChhhHHHHHhCCChHHHHHHhccC-ChHHHHHHHHHHHHhcC
Q 008585 231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISA 307 (560)
Q Consensus 231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~ 307 (560)
..++ +.++.++....+....++..|..++..+.. ++.....+ +|.|+..+.+. .+..+..|+.++..|+.
T Consensus 91 ~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 91 PYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKAL-----LPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 3444 578999999999889999998888888843 45444333 48999988764 69999999999999985
Q ss_pred CchhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc--CChhHHHHHHhCCCHHHHHHhccCCccHHHHHHH
Q 008585 308 VPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA--SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGA 383 (560)
Q Consensus 308 ~~~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~--~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~ 383 (560)
.. ...+.. ..+||.+-..+.+..+ +++..|..++..+|. +|.+. ...++.|++.+.+|+-...++..
T Consensus 164 ~~--~~~~~~~~~~~~p~~~~~~~d~k~-~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~~~~~~~~ 234 (986)
T 2iw3_A 164 AA--KDQVALRMPELIPVLSETMWDTKK-EVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTEVPETVHL 234 (986)
T ss_dssp HS--HHHHHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTHHHHHHHH
T ss_pred Hh--HHHHHHhccchhcchHhhcccCcH-HHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhhhHHHHHH
Confidence 32 222222 4578888888888876 899999999999987 33332 23488999999888766666666
Q ss_pred HHHhhc-ccc-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC---hhHHHHHHhcCCHHHHHHHHc-cCCHHH
Q 008585 384 LRNLVG-SVS-QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS---AEMKKLVGEAGCTPLLIKLLE-AKPNSV 457 (560)
Q Consensus 384 L~nla~-~~~-~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~---~~~~~~i~~~g~i~~Lv~ll~-s~~~~v 457 (560)
|+.-.+ .+. ...+ .=.+|.|.+-|+.....+++.++-++.|||.- +.....+. -..+|.+-+... ..+|++
T Consensus 235 l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 235 LGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEA 311 (986)
T ss_dssp HTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHH
T ss_pred hhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHH
Confidence 666665 221 1111 11467777888888999999999999999965 33333321 356777776665 468999
Q ss_pred HHHHHHHHHHhc---CC--ChhhHHHhhhCC----ChHHHHhccCCC----CchhhHHHHHHHHHHhCCChhhHHHHHHc
Q 008585 458 REVAAQAISSLV---TL--PQNCREVKRDDK----SVPNLVQLLDPS----PQNTAKKYAVACLASLSPSKKCKKLMISY 524 (560)
Q Consensus 458 ~~~A~~aL~~L~---~~--~~~~~~~~~~~~----~v~~Lv~lL~~~----~~~~~~~~a~~~L~~L~~~~~~r~~i~~~ 524 (560)
|+.|..++..|- .. ........ ..+ ....+...+... ..+.+..|+..+...+.........-+..
T Consensus 312 r~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 390 (986)
T 2iw3_A 312 REVTLRALKTLRRVGNVGEDDAIPELS-HAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFT 390 (986)
T ss_dssp HHHHHHHHHHHHHHHTCBTTTBCCCCC-CTTCHHHHHHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccccc-ccchHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhccccchhHHHH
Confidence 999988888884 11 11100000 001 112344445443 12346778888888887766555555666
Q ss_pred ChhHHHHHhhccCchhHHHHHHHHh
Q 008585 525 GAIGYLKKLSEMDIPGARKLLERLE 549 (560)
Q Consensus 525 g~i~~L~~L~~~~~~~akkl~~~l~ 549 (560)
...+||..+.. ..+++.+++.+.
T Consensus 391 ~~~~~~~~~~~--~~~~~~~~~~~~ 413 (986)
T 2iw3_A 391 HITPYMTIFLH--EKKAKDILDEFR 413 (986)
T ss_dssp HTHHHHTTTSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--hhhHHHHHHHHH
Confidence 67788776643 445666655543
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.52 E-value=4e-07 Score=86.74 Aligned_cols=180 Identities=13% Similarity=0.182 Sum_probs=136.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCc--hHHHHH
Q 008585 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGS--CENWLV 234 (560)
Q Consensus 158 ~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~--~~~~l~ 234 (560)
.+...+++.+...|..|+..|..++...++...... ...++.|...+ ++.+..++..|+.+++.|+..-. ....+
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 366778889999999999999999986432100000 13467788888 48899999999999999996422 21222
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhc-CC-ch--
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS-AV-PE-- 310 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa-~~-~~-- 310 (560)
..+++.++..+++.+..+|..+..+|..+....... . .++.+...+++.++.+|..++..|..+. .. ++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~-~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE-A-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH-H-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH-H-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 237899999999999999999999999997754322 2 3477888899999999999999999964 33 32
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 311 ~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
....+ ...++.+..++.+... ++|..|..+++.++.
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~-~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDP-TVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHH
Confidence 22333 3589999999998886 899999999999885
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.50 E-value=3.1e-06 Score=77.24 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=144.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWL 233 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l 233 (560)
.+..++..|+..|+.++..++..|-++.+.-++......-...++.++.++++.+..+--.|+++|..|-.+.+ ....+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 46677888899999999999999999999855443333334689999999999999999999999999988765 44444
Q ss_pred HhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCC---ch
Q 008585 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV---PE 310 (560)
Q Consensus 234 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~---~~ 310 (560)
.. +...+..+++++++..+++++..+..+.-....+.. +..+..++.+.++.++..+..+|.|++.. ++
T Consensus 114 ~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V------~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 114 LK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLV------RTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHH------HHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHH------HHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 44 478889999999999999999999999332333332 36788888999999999999999999852 23
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC
Q 008585 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350 (560)
Q Consensus 311 ~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~ 350 (560)
+-+ +++.-+-.++++.++ .+++.|+.+|-.+...
T Consensus 186 i~~-----~I~~eI~elL~~eD~-~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 186 HLT-----LILDEIPSLLQNDNE-FIVELALDVLEKALSF 219 (265)
T ss_dssp CGG-----GTTTTHHHHHTCSCH-HHHHHHHHHHHHHTTS
T ss_pred HHH-----HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHcC
Confidence 333 344556677888876 8999999999999874
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.47 E-value=5.3e-05 Score=83.98 Aligned_cols=289 Identities=16% Similarity=0.043 Sum_probs=192.4
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHH
Q 008585 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT---ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI 243 (560)
Q Consensus 167 ~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv 243 (560)
....+..|+.+|.-+-..+. .+++..|-+.|. ++++.++..|+.+|+.+...... .++..|.
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~ 435 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLK 435 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHH
T ss_pred chHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHH
Confidence 33345555555555544332 135666777776 56789999999999998665431 1467777
Q ss_pred HhhhcCC--------HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585 244 RLVESGS--------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML 315 (560)
Q Consensus 244 ~lL~~~~--------~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (560)
..|.+.+ +.++..|+..|.-......+.. +++.|..++.+.+..++..|+.+|+.+-....+.
T Consensus 436 ~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee------v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--- 506 (963)
T 4ady_A 436 NIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE------VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--- 506 (963)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH------HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH---
T ss_pred HHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH---
Confidence 7777655 6688888888888743222222 2367778888777777778888888763221111
Q ss_pred HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc---CCccHHHHHHHHHHhhc-cc
Q 008585 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD---GPLPQESAVGALRNLVG-SV 391 (560)
Q Consensus 316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~---~~~~~~~a~~~L~nla~-~~ 391 (560)
.++..|++.+.+.....+++.++..|+.+..+++.. ++.+++.|. ++.++..++.+++.-.. ..
T Consensus 507 ---~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 507 ---EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred ---HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 234556665544433489999999999998776654 556666653 36677777777775554 33
Q ss_pred cHHHHHhCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHH-HccCCHHHHHHHHHHHHHhc
Q 008585 392 SQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKL-LEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 392 ~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~l-l~s~~~~v~~~A~~aL~~L~ 469 (560)
+.. .|+.|++.+.+ .+..+++.|+.+|+.+..... ..++.++.+ .++.++.+|..|+.+|..++
T Consensus 575 n~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 575 NNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred CHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 322 47777776654 578899999999999875421 346666664 45788999999999999998
Q ss_pred CCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC
Q 008585 470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP 513 (560)
Q Consensus 470 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~ 513 (560)
.+.++.+. +..|..++++. ++.++..|+.+|..+..
T Consensus 641 aGn~~~~a-------id~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 641 AGKGLQSA-------IDVLDPLTKDP-VDFVRQAAMIALSMILI 676 (963)
T ss_dssp SSSCCHHH-------HHHHHHHHTCS-SHHHHHHHHHHHHHHST
T ss_pred cCCCcHHH-------HHHHHHHccCC-CHHHHHHHHHHHHHHhc
Confidence 66655322 46677777766 34588888888886653
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.45 E-value=1.2e-05 Score=80.20 Aligned_cols=303 Identities=12% Similarity=0.073 Sum_probs=169.4
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh
Q 008585 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV 246 (560)
Q Consensus 167 ~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL 246 (560)
++.....++..+..+...++....... ......+++++.+++...+...--.+..++..++.. + =++..+.+=+
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl 113 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDM 113 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhc
Confidence 344445566666666544332110000 023445678999999999999888888888764321 1 2577888888
Q ss_pred hcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHH
Q 008585 247 ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMI 325 (560)
Q Consensus 247 ~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~ 325 (560)
+++++-+|..|.++|+++.. ++..+.+. +.+-..+.+.+|.++..|+.+..+|.. .++.. + +.+..+-
T Consensus 114 ~~~N~~iR~lALRtL~~I~~-~~m~~~l~-----~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~ 182 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALCQITD-STMLQAIE-----RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQ 182 (355)
T ss_dssp HSSCHHHHHHHHHHHHHHCC-TTTHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHH
T ss_pred CCCcHhHHHHHHHHHhcCCC-HHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHH
Confidence 99999999999999999965 33333333 677788889999999999999999975 44432 2 5788888
Q ss_pred HHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC-----CccHHHHHHHHHHhhccccHHHHHhCC
Q 008585 326 KLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-----PLPQESAVGALRNLVGSVSQEVLISLG 400 (560)
Q Consensus 326 ~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~-----~~~~~~a~~~L~nla~~~~~~~l~~~~ 400 (560)
+++.+.++ .++.+|+.+|..+...+... +..++..+.. +..+..-++.+..++..+.. -....
T Consensus 183 ~ll~d~n~-~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~--~~~~~ 250 (355)
T 3tjz_B 183 EAASSDNI-MVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG--SRDSP 250 (355)
T ss_dssp HHTTCSSH-HHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------
T ss_pred HHhcCCCc-cHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch--hhHHH
Confidence 99988886 89999999999998765321 3333443322 22223333333333322101 12356
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhh
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~ 480 (560)
+++.+...|++.++.|.-+|+.++..+...+.. .. ..++..|..++.+.++++|..|+..|..++...++.-.
T Consensus 251 ~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~--- 323 (355)
T 3tjz_B 251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT--- 323 (355)
T ss_dssp ------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC---------------
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH---
Confidence 778888888999999999999999998653211 11 23467788888899999999999999998755444222
Q ss_pred hCCChHHHHhccCCCCchhhHHHHHHHH
Q 008585 481 DDKSVPNLVQLLDPSPQNTAKKYAVACL 508 (560)
Q Consensus 481 ~~~~v~~Lv~lL~~~~~~~~~~~a~~~L 508 (560)
..-..+..++.+++.. +..+|+..|
T Consensus 324 --~~n~~ie~li~d~n~s-I~t~Aittl 348 (355)
T 3tjz_B 324 --ACNLDLENLVTDANRS-IATLAITTL 348 (355)
T ss_dssp ----------------------------
T ss_pred --HHHHHHHHHccCCcHh-HHHHHHHHh
Confidence 2336677778776433 343444443
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.37 E-value=0.00014 Score=80.59 Aligned_cols=262 Identities=17% Similarity=0.081 Sum_probs=178.8
Q ss_pred cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC--------HHHHHHHHHHHHHHhcCCchHHHHHhC
Q 008585 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--------PRIREKTVTVICSLAESGSCENWLVSE 236 (560)
Q Consensus 165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--------~~v~~~A~~~L~~La~~~~~~~~l~~~ 236 (560)
++++..+.-|+..|.-+..+... ..+..|...|.+++ +.++..|+..|+........ .
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-e----- 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-I----- 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-H-----
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-H-----
Confidence 45677788888888776554321 14667777776554 66888888888886433221 1
Q ss_pred CCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHh-ccCChHHHHHHHHHHHHhcCCchhHHHH
Q 008585 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQML 315 (560)
Q Consensus 237 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i 315 (560)
.+++.|..+|.+.+...++.|+.+|..+-....+...+ ..|+..+ .+.+..+++.++.+|..+....
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai------~~LL~~~~e~~~e~vrR~aalgLGll~~g~------ 539 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI------HDMFTYSQETQHGNITRGLAVGLALINYGR------ 539 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTC------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH------HHHHHHHhccCcHHHHHHHHHHHHhhhCCC------
Confidence 24778888998888777888888888773322222222 4555554 3467788999999998776422
Q ss_pred HhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc-C--CccHHHHHHHHHHhhcccc
Q 008585 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G--PLPQESAVGALRNLVGSVS 392 (560)
Q Consensus 316 ~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~-~--~~~~~~a~~~L~nla~~~~ 392 (560)
...++.+++.|....+..+|+.++.+++.-..+..+... ++.|+..+. + ..+|..|+-+|+.+...+
T Consensus 540 --~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a-------Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~- 609 (963)
T 4ady_A 540 --QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA-------VKRLLHVAVSDSNDDVRRAAVIALGFVLLRD- 609 (963)
T ss_dssp --GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH-------HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-
T ss_pred --hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHhccCCcHHHHHHHHHHHHhhccCC-
Confidence 235677777777544447888888887755444333221 666777663 2 468889999999887521
Q ss_pred HHHHHhCCcHHHHHHHH-hcCCHHHHHHHHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 393 QEVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 393 ~~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
...++.++..| ++.++.++..|+.+|+.++.+.... ..+..|..+.++.+..||..|+.+|..+...
T Consensus 610 ------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 610 ------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp ------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 13467777644 5689999999999999998553221 2367788888999999999999999999854
Q ss_pred Chh
Q 008585 472 PQN 474 (560)
Q Consensus 472 ~~~ 474 (560)
..+
T Consensus 678 tnn 680 (963)
T 4ady_A 678 QTE 680 (963)
T ss_dssp CCT
T ss_pred Ccc
Confidence 433
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.36 E-value=0.00013 Score=63.78 Aligned_cols=211 Identities=18% Similarity=0.265 Sum_probs=159.0
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhc-cCChHHHHHHHHHHHHhcC-Cchh
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISA-VPEV 311 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~-~~~~ 311 (560)
+...+..++.+|.++-+.++.+|...+..++.. ++....+. ..|+.+++ ++........+.+++.++. .|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 345788999999999999999999999999886 55555443 66777764 5666676778888988885 4443
Q ss_pred HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCc--cHHHHHHHHHHhhc
Q 008585 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVG 389 (560)
Q Consensus 312 ~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~--~~~~a~~~L~nla~ 389 (560)
-. +.+|.+..=..-+++ .++.+...+|..++..++.....+ +.-+..++.+++ -+-.|+.+|..+..
T Consensus 105 v~-----~vVp~lfanyrigd~-kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDE-KTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSH-HHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HH-----hhHHHHHHHHhcCCc-cceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 32 356777776777876 899999999999999988776544 566778887754 35567777777765
Q ss_pred cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhC-ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 008585 390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468 (560)
Q Consensus 390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~-~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L 468 (560)
+. .+- -.-++|+|..+|.+++.-|+..|..+|.+++. ++..|+.+. .-++-+...+..++....++|..|
T Consensus 174 n~-~~y--v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 174 NS-FKY--VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TT-HHH--HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred cC-ccc--cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHH
Confidence 21 111 24689999999999999999999999999995 477776652 234456677788999999999888
Q ss_pred cC
Q 008585 469 VT 470 (560)
Q Consensus 469 ~~ 470 (560)
+.
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.29 E-value=9.4e-08 Score=81.83 Aligned_cols=122 Identities=17% Similarity=0.249 Sum_probs=92.3
Q ss_pred hCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHH
Q 008585 194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA 273 (560)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 273 (560)
....++.++.+|+++++.+|..|+.+|+.+... .++.|+++|++.++.+|..++++|.++.. +
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-~----- 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD-E----- 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-H-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-H-----
Confidence 346788899999999999999999888766421 36899999999999999999999999853 1
Q ss_pred HHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL 347 (560)
Q Consensus 274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~L 347 (560)
..++.|+..++++++.+|..++++|.++.. ..+++.|..++++++. .++..++.+|.+|
T Consensus 73 ----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~-~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ----RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTG-FARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCT-HHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHhC
Confidence 236889999999999999999999998863 3468889999988776 8999999888653
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.18 E-value=3.4e-05 Score=76.87 Aligned_cols=274 Identities=14% Similarity=0.054 Sum_probs=154.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
.....++.+++.+.+.|.-..-.+..++...++. + =.+..+.+=++++++.+|-.|+++|+++...+-..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~---- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ---- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH----
Confidence 3455667788999888888777887777653321 1 14778888889999999999999999997654221
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHH
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~ 313 (560)
...+.+.+.|.+.++.++..|+.+..+|... ++.. + +++..+-+++.+.++.++.+|..+|..+..++..
T Consensus 139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 2456677888899999999999999999654 4432 2 5789999999999999999999999999875421
Q ss_pred HHHhcCcHHHHHHHhhcCC--chhHHHHHHHHHHHHccCC-hhHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhh
Q 008585 314 MLAEEGIVSVMIKLLDCGI--LLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV 388 (560)
Q Consensus 314 ~i~e~g~v~~L~~lL~~~~--~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla 388 (560)
++..++.-+..+. ....+..-++++..++..+ +.. ....++.+...+++ +.+...|+.+|..+.
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~ 278 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNLP 278 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC--
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 3344455454432 1133333344443444333 221 12345566666665 567888888888875
Q ss_pred ccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 008585 389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466 (560)
Q Consensus 389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~ 466 (560)
.. .... ...++..|..+|.+.++.+|-.|+..|..+... |+.-. .+-..+.+++.+.+-.+...|..+|.
T Consensus 279 ~~--~~~~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 279 GC--SAKE-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred CC--CHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 41 1111 134567777888899999999999999998843 33221 23455677777777777766665543
No 77
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.15 E-value=0.00043 Score=70.70 Aligned_cols=312 Identities=14% Similarity=0.118 Sum_probs=194.8
Q ss_pred hCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCc---hHHHH-HhCC-CHHHHHH-hhhcCCHHHHHHHHHHHHHhhC
Q 008585 194 GRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGS---CENWL-VSEG-VLPPLIR-LVESGSTVGKEKATISLQRLSM 266 (560)
Q Consensus 194 ~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~---~~~~l-~~~g-~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~ 266 (560)
+..++..++++|+. ++.++....+..+..+..+++ .+..+ .+.. ....+.. .+..++......+..++..++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 44568889999985 458999999999999887765 33333 2222 2222332 3444556666777777677643
Q ss_pred C-hh---hHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHhcCCchhHHHHHhcC--cHHHHHHHhhcC--------
Q 008585 267 S-AE---MARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEG--IVSVMIKLLDCG-------- 331 (560)
Q Consensus 267 ~-~~---~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g--~v~~L~~lL~~~-------- 331 (560)
. +. ....+.... -++..+.. ++...+..++.+|..|...++.|..+.+.+ .++.++.++...
T Consensus 155 ~~~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 155 NGLHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp TTTCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred cCCccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 2 22 112222111 34455554 345667789999999999999999998643 467776654411
Q ss_pred -------C-chhHHHHHHHHHHHHccCChhHHHHHHhCCCH--HHHHHhccC---CccHHHHHHHHHHhhccc--cH---
Q 008585 332 -------I-LLGSKEYAAECLQNLTASNENLRRSVVSEGGI--RSLLAYLDG---PLPQESAVGALRNLVGSV--SQ--- 393 (560)
Q Consensus 332 -------~-~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l--~~L~~ll~~---~~~~~~a~~~L~nla~~~--~~--- 393 (560)
. ...++++++.|++.++...+ ..+.+.+.+.. ..|+.++.. .++...++.+|.|+.... ..
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~ 310 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKV 310 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhH
Confidence 1 23578999999999999644 45566666532 455555543 567788899999999832 11
Q ss_pred -H-HHHhCCcHHHHHHHHhc---CCHHHHHHHHHHHHHH-------hCChhHHH----------------HHHhc-----
Q 008585 394 -E-VLISLGFFPRLVHVLKA---GSLGAQQAAASALCRV-------CTSAEMKK----------------LVGEA----- 440 (560)
Q Consensus 394 -~-~l~~~~~i~~Lv~lL~~---~~~~v~~~A~~aL~~L-------a~~~~~~~----------------~i~~~----- 440 (560)
. .+...++ .+++..|.. .|+++.+..-.....| +..+++.. .++.+
T Consensus 311 ~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf 389 (480)
T 1ho8_A 311 IKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF 389 (480)
T ss_dssp HHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG
T ss_pred HHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHH
Confidence 1 2222333 556666654 4565554332222222 11122222 22222
Q ss_pred -----CCHHHHHHHHcc----------CCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHH
Q 008585 441 -----GCTPLLIKLLEA----------KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAV 505 (560)
Q Consensus 441 -----g~i~~Lv~ll~s----------~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~ 505 (560)
..++.|++++.+ .++.+...||.=++.++.+.++-+.++.+-++=..+++++.+.+ +.++..|+
T Consensus 390 ~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~~AL 468 (480)
T 1ho8_A 390 KKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKYEAL 468 (480)
T ss_dssp SSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHHHHH
T ss_pred HhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHHHHH
Confidence 257889999973 35667888899999999776676778877777788889998764 46888888
Q ss_pred HHHHHh
Q 008585 506 ACLASL 511 (560)
Q Consensus 506 ~~L~~L 511 (560)
.++..+
T Consensus 469 ~avQkl 474 (480)
T 1ho8_A 469 KATQAI 474 (480)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877644
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.14 E-value=8.2e-06 Score=77.90 Aligned_cols=183 Identities=8% Similarity=0.100 Sum_probs=132.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-HHhhChHHHHHHhh-CCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCC---chH-H
Q 008585 159 LLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMG-RSNIAALVQLL-TATSPRIREKTVTVICSLAESG---SCE-N 231 (560)
Q Consensus 159 Ll~~L~~~~~~~~~~A~~~L~~-L~~~~~~~~~~i~~-~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~---~~~-~ 231 (560)
+...+++.+...|.+|+..|.. ++.+.++......+ ...+..|.+.+ +..+..++..|+.+|+.|+..- ... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456789999999999999999 88654421100001 12366777888 6888999999999999998532 222 2
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh------hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA------EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~------~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (560)
... -+++.++..+++....++..+..++..++..- .+-.. .++.|+..+++.+|.+|..++..|..+
T Consensus 101 y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~-----ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 101 YVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNED-----MLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp HHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 222 26899999999999999999999988886532 10112 347888889999999999999999988
Q ss_pred cCC-ch---hHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 306 SAV-PE---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 306 a~~-~~---~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
... +. .-........+|.+.+++.+.+. .+|..|..++..++.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~-~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP-AIRTIGFESFAILIK 220 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHH
Confidence 742 21 11112224689999999998886 899999999999875
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.13 E-value=0.00034 Score=61.25 Aligned_cols=212 Identities=17% Similarity=0.176 Sum_probs=148.3
Q ss_pred hCCChHHHHHHhccCChHHHHHHHHHHHHhcC-CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhH
Q 008585 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354 (560)
Q Consensus 276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~ 354 (560)
+...+..++.+|.+.-+.++.+|...+.+++. .++....+ +..|+.+++..+..........+++.++.-+++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 44567889999999889999999999999985 55555444 4556677766655466677888999999877765
Q ss_pred HHHHHhCCCHHHHHHhc--cCCccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChh
Q 008585 355 RRSVVSEGGIRSLLAYL--DGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE 432 (560)
Q Consensus 355 ~~~i~~~g~l~~L~~ll--~~~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~ 432 (560)
-+.+ ++.++.-. .++..+.+..++|..++.. +++. -.+++.-+..++.+.+..=+-.|...+..++.+
T Consensus 105 v~~v-----Vp~lfanyrigd~kikIn~~yaLeeIara-nP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-- 174 (253)
T 2db0_A 105 VKSM-----IPVLFANYRIGDEKTKINVSYALEEIAKA-NPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-- 174 (253)
T ss_dssp HHHH-----HHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--
T ss_pred HHhh-----HHHHHHHHhcCCccceecHHHHHHHHHHh-ChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--
Confidence 3322 44444433 3477889999999999872 1111 134577788889988877777777777777643
Q ss_pred HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHh
Q 008585 433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL 511 (560)
Q Consensus 433 ~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L 511 (560)
.-+++ ..++|.|..+++.++.-+|..|.++|.+++...+..+..+ ..-++-+++.. +.+++....+|..+
T Consensus 175 ~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S-~lv~~~V~egL~rl 244 (253)
T 2db0_A 175 SFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTS-SLVNKTVKEGISRL 244 (253)
T ss_dssp THHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSC-HHHHHHHHHHHHHH
T ss_pred Ccccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcH-HHHHHHHHHHHHHH
Confidence 22333 4679999999999999999999999999998777766655 33344455442 23444454555443
No 80
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.13 E-value=5.2e-06 Score=78.91 Aligned_cols=141 Identities=13% Similarity=0.081 Sum_probs=105.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcC-Cch-HHHHHhCCCHHHHHHhhh-cCCHHHHHHHHHHHHHhhCChhhHHHHHh
Q 008585 200 ALVQLLTATSPRIREKTVTVICSLAES-GSC-ENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVG 276 (560)
Q Consensus 200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~-~~~l~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~l~~ 276 (560)
.+.+.+.+.++..|..|+..|..+... +.. ...+ ..+++.|...+. +.+..++..++.++..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 477788888999999999999999775 321 1111 135777888884 88999999999999999853211101111
Q ss_pred CCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
...++.++..+.+.++.+|..+..+|.++...... ..+++.+...+.+.++ .++..++..|..+..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~-~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNP-SVKSETALFIARALT 162 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHH
Confidence 23569999999999999999999999999864332 1357788888888876 899999999999654
No 81
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.09 E-value=4e-05 Score=69.96 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=135.7
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHH
Q 008585 278 GGVRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355 (560)
Q Consensus 278 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~ 355 (560)
+.+..|..++.+.|+.++..++.+|.++-.. ...+.... ...++.++.++.+.++ .+.-.|+.||..|-.+.+--.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dE-kval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENE-KVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTH-HHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccch-hHHHHHHHHHHHHHcCCCCCH
Confidence 3457889999999999999999999999753 33343444 4589999999988886 899999999999988554222
Q ss_pred HHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChh
Q 008585 356 RSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE 432 (560)
Q Consensus 356 ~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~ 432 (560)
+.+.+ ....+..++.+ +-.++.+...++.+-. ...+ +++..+..++.+.+..+|..+..++.+++...+
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 22211 24566666655 3468899999998833 2233 368889999989999999999999999995422
Q ss_pred HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 433 ~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
....+ .+.+..+-.++.+.++.+++.|..+|-.+...
T Consensus 183 D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11111 24466677889999999999999999999754
No 82
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.05 E-value=4e-07 Score=77.85 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=91.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
.++.++..|++.++..+..|+..|..+- ...++.|+.+|+++++.+|..|+++|+.+..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~------------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhC------------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 4667777888888888888877776542 1237899999999999999999999998863
Q ss_pred hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585 235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (560)
Q Consensus 235 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (560)
...++.|+..|++.++.+|..++++|.++.. ...++.|+.+++++++.++..++.+|.++
T Consensus 72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1258999999999999999999999999852 12358899999999999999999998764
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.96 E-value=2.8e-05 Score=74.19 Aligned_cols=183 Identities=9% Similarity=0.125 Sum_probs=128.5
Q ss_pred HHHHhccCChHHHHHHHHHHHH-hcC-CchhHHHHHh-cCcHHHHHHHh-hcCCchhHHHHHHHHHHHHccCC--hhHH-
Q 008585 283 LIEICQTGDSVSQAAAACTLKN-ISA-VPEVRQMLAE-EGIVSVMIKLL-DCGILLGSKEYAAECLQNLTASN--ENLR- 355 (560)
Q Consensus 283 Lv~ll~~~~~~~~~~a~~aL~n-La~-~~~~~~~i~e-~g~v~~L~~lL-~~~~~~~v~~~a~~~L~~La~~~--~~~~- 355 (560)
+.+.+.+.++.-|..++..|.. +.. .++....-.+ ...+..+.+.+ ++.+. .++..|+.+|+.|+.+- +...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~-~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI-QAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHhcccccccH
Confidence 4466788999999999999999 863 2222100001 23577888888 56665 78999999999998521 1111
Q ss_pred HHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHH--hCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-
Q 008585 356 RSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS- 430 (560)
Q Consensus 356 ~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~- 430 (560)
.+. .-.++.++..+.+ +.++..+..++.+++......... -..+++.|+..|++.++.+++.++.+|..++..
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 111 1247888888876 567888888888888621110000 113688889999999999999999999998843
Q ss_pred hh----HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 431 AE----MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 431 ~~----~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.. ... ......+|.|.+++...+.++|..|..+|..++
T Consensus 178 ~~~~~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 178 KDGYSTLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp CSCSHHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCcchhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 21 112 222467999999999999999999999999996
No 84
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.89 E-value=0.00065 Score=66.02 Aligned_cols=177 Identities=14% Similarity=0.078 Sum_probs=134.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV 234 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~ 234 (560)
.+..++..|++++.+.+..++..|..+..++......++..+|+..|+......+...+..++.++.+|-.+.....-++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 36788889999999999999999999877888899999999999999999999999999999999999988866555555
Q ss_pred -hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC-hhhHHHHHh----------CCChHHHHHHhc---cCChHHHHHHH
Q 008585 235 -SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVG----------HGGVRPLIEICQ---TGDSVSQAAAA 299 (560)
Q Consensus 235 -~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~----------~g~i~~Lv~ll~---~~~~~~~~~a~ 299 (560)
....|..+..++.+.+..+...|..+|..+... +.+...+.+ .--+..|+.+|+ +.+.+++..+.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 445788888899988888999999999999764 334332221 123788999997 67889998877
Q ss_pred HHHHHhc---CCchhHHHHH----hcCcHHHHHHHhhcC
Q 008585 300 CTLKNIS---AVPEVRQMLA----EEGIVSVMIKLLDCG 331 (560)
Q Consensus 300 ~aL~nLa---~~~~~~~~i~----e~g~v~~L~~lL~~~ 331 (560)
..+-.+- .+.+.+..+. +.|.-..+...+...
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 6665442 2233233333 344445555656553
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.79 E-value=0.00051 Score=66.72 Aligned_cols=175 Identities=14% Similarity=0.162 Sum_probs=125.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHH-hcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHH-
Q 008585 282 PLIEICQTGDSVSQAAAACTLKN-ISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV- 359 (560)
Q Consensus 282 ~Lv~ll~~~~~~~~~~a~~aL~n-La~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~- 359 (560)
.+++-|.+.+...++.++.-|.. ++.+.+....|++.+++.+|++....++. ..+.+++.+|.+|..+..+. .-++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g-N~q~Y~L~AL~~LM~~v~Gm-~gvvs 199 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH-NYQSYILRALGQLMLFVDGM-LGVVA 199 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTSHHHH-HHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh-HHHHHHHHHHHHHHhccccc-cchhC
Confidence 34455556677778888889998 67788999999999999999999999886 89999999999999875554 3344
Q ss_pred hCCCHHHHHHhccC--CccHHHHHHHHHHhhc--cccHHHHHh----------CCcHHHHHHHHh---cCCHHHHHHHHH
Q 008585 360 SEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLIS----------LGFFPRLVHVLK---AGSLGAQQAAAS 422 (560)
Q Consensus 360 ~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~--~~~~~~l~~----------~~~i~~Lv~lL~---~~~~~v~~~A~~ 422 (560)
+...+..+..++.+ ..+...|+..|.+++. +.+...+.+ ......|+.+|+ +.+.+++..|..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 44568888888876 4567889999999987 223332211 123789999997 678999999988
Q ss_pred HHHHHhCC---hh----HHHHHHhcCCHHHHHHHHccC--CHHHH
Q 008585 423 ALCRVCTS---AE----MKKLVGEAGCTPLLIKLLEAK--PNSVR 458 (560)
Q Consensus 423 aL~~La~~---~~----~~~~i~~~g~i~~Lv~ll~s~--~~~v~ 458 (560)
.|-.+-.. .+ ....+.+.|.-..+.+.+... +++++
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~ 324 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLR 324 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHH
Confidence 77766432 23 233344445444555556543 44443
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.63 E-value=0.0051 Score=69.06 Aligned_cols=288 Identities=15% Similarity=0.147 Sum_probs=187.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhh--HHHHHhCC
Q 008585 201 LVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM--ARAIVGHG 278 (560)
Q Consensus 201 Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~--~~~l~~~g 278 (560)
+.+-+...+..-+..++..+..+...+..- ..+..+.+..+.+.+.+.... +.|+.++..|+..... ..+..--+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 333344433333455555666654432100 111125677777777765443 8999999999854221 11222225
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHH
Q 008585 279 GVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR 356 (560)
Q Consensus 279 ~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~ 356 (560)
.++.++..+.+....++..|-.++..+.. +++.. ..++|.++..+.+......+..|+.++..|+...+.
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~--- 167 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD--- 167 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH---
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH---
Confidence 78999999999889999888777776653 33332 236899999998765337899999999999975432
Q ss_pred HHHh--CCCHHHHHHhccC--CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC-
Q 008585 357 SVVS--EGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS- 430 (560)
Q Consensus 357 ~i~~--~g~l~~L~~ll~~--~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~- 430 (560)
.+.. ...+|.+...+-+ +++...|..++..+|. -.+.+ -..++|.|++.+.+++. | -.++..|+..
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~p~~-~----~~~~~~l~~~t 239 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIADPTE-V----PETVHLLGATT 239 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHCTTH-H----HHHHHHHTTCC
T ss_pred HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcChhh-h----HHHHHHhhcCe
Confidence 2221 3457777777765 6789999999999998 23332 25689999999988753 3 2345555533
Q ss_pred --hh-HHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC---CChhhHHHhhhCCChHHHHhccCCCCchhhHHHH
Q 008585 431 --AE-MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT---LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYA 504 (560)
Q Consensus 431 --~~-~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~---~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a 504 (560)
.+ ....+ +=.+|.|.+-|......++..++..+-||+. ++.....|+ .+.++.+-...+.-.++++++.+
T Consensus 240 fv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~ 315 (986)
T 2iw3_A 240 FVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVT 315 (986)
T ss_dssp CCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHH
T ss_pred eEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHH
Confidence 11 11122 1248888888988888899999999999983 444556666 37778887777766566777777
Q ss_pred HHHHHHh
Q 008585 505 VACLASL 511 (560)
Q Consensus 505 ~~~L~~L 511 (560)
-.++..|
T Consensus 316 ~~a~~~l 322 (986)
T 2iw3_A 316 LRALKTL 322 (986)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.17 E-value=0.043 Score=62.65 Aligned_cols=246 Identities=13% Similarity=0.121 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCchHHHHHhC-----CCH
Q 008585 171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT------ATSPRIREKTVTVICSLAESGSCENWLVSE-----GVL 239 (560)
Q Consensus 171 ~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~------~~~~~v~~~A~~~L~~La~~~~~~~~l~~~-----g~i 239 (560)
+..|...|..++...++. +.. -.++.+.+.+. +.++..++.|+.+++.++........-... ...
T Consensus 378 R~aa~~~L~~l~~~~~~~---v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 378 RRACTDFLKELKEKNEVL---VTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp HHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred HHHHHHHHHHHHHHcchh---HHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 444555666666544321 111 12334444454 456889999999999998642110000000 122
Q ss_pred H----HHHHhhhcC---CHHHHHHHHHHHHHhhCC--hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCc-
Q 008585 240 P----PLIRLVESG---STVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP- 309 (560)
Q Consensus 240 ~----~Lv~lL~~~---~~~~~~~a~~~L~~La~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~- 309 (560)
+ .++..|.+. ++.+|..+++++.+++.. ++... ..++.++..+.++++.++..|+.+|.+++...
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 2 233345666 889999999999999764 22222 23477888888888999999999999998631
Q ss_pred -------h-hHHHHHh--cCcHHHHHHHhhcCC----chhHHHHHHHHHHHHccCC-hhHHHHHHhCCCHHHHHHhc---
Q 008585 310 -------E-VRQMLAE--EGIVSVMIKLLDCGI----LLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYL--- 371 (560)
Q Consensus 310 -------~-~~~~i~e--~g~v~~L~~lL~~~~----~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~ll--- 371 (560)
+ .+..+.. ...++.|+.++.... .....+.+..+|..++... +.....+. ..++.+...+
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHH
Confidence 2 1222222 346677777777641 0013355666666654311 11111110 1233344333
Q ss_pred -cCC---ccHHHHHHHHHHhhcc--ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008585 372 -DGP---LPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV 427 (560)
Q Consensus 372 -~~~---~~~~~a~~~L~nla~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~L 427 (560)
+++ .....++.+|+.++.. .....-....+++.+...|.....+....+...+..+
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 232 2344567777777652 1111223345677777777765444444444444443
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.15 E-value=0.0086 Score=56.82 Aligned_cols=176 Identities=13% Similarity=0.097 Sum_probs=123.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh----cCCCHHHHHHHHHHHHHHhc----CCc
Q 008585 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL----TATSPRIREKTVTVICSLAE----SGS 228 (560)
Q Consensus 157 ~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL----~~~~~~v~~~A~~~L~~La~----~~~ 228 (560)
.++...|.+.+...+.++++.|.+....+++.... .++.+++.+ -++++.+...++.+|..+.. .+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~-----~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS-----NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH-----THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 35667777888888999999999988776644322 333344433 36678888888888777632 211
Q ss_pred -hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 229 -CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 229 -~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
....- ..-.+|.|+.-+.+....+|..+-.++..+....+... .++.+++-+++.++..|..++..+.++-.
T Consensus 124 ~~~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~------v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLK------MTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH------HHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 11111 12268999999999999999999888877754322222 23677788889999999999998888853
Q ss_pred CchhHHHHHhcCcH---HHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 308 VPEVRQMLAEEGIV---SVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 308 ~~~~~~~i~e~g~v---~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
..+.. -..++ +.+.+++.+.+. .||..|+.++..+-.
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~-~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDV-NVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSH-HHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCH-HHHHHHHHHHHHHHH
Confidence 22211 23467 999999999887 899999999887654
No 89
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.13 E-value=0.063 Score=49.82 Aligned_cols=211 Identities=15% Similarity=0.163 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHHccCChhHHHHHHh-CCCHHHHHHhc-------cCCcc-------HHHHHHHHHHhhc-cccHHHHHh
Q 008585 335 GSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYL-------DGPLP-------QESAVGALRNLVG-SVSQEVLIS 398 (560)
Q Consensus 335 ~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~ll-------~~~~~-------~~~a~~~L~nla~-~~~~~~l~~ 398 (560)
+.|+.|+.-|..=-...++....+.+ -|.+..|++=+ ..|.. .-+|+..|..+|. ++.+..+++
T Consensus 16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~ 95 (268)
T 2fv2_A 16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLA 95 (268)
T ss_dssp TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHH
T ss_pred hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHH
Confidence 45888877766655555666666665 45555554433 22222 2577888888888 788999999
Q ss_pred CCcHHHHHHHHhcCC-----HHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 399 LGFFPRLVHVLKAGS-----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 399 ~~~i~~Lv~lL~~~~-----~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
.++.-.|..+|+..+ ..++-.+..+++.+.+. ++.-..+.+.+.+|..++.++.+++-.+..|...+..+..+
T Consensus 96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 175 (268)
T ss_dssp TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhcc
Confidence 999989999998654 57888999999999854 78888889999999999999999999999999999998866
Q ss_pred ChhhHHH-------hhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCChhhHHHHHHc-------ChhHHHHHhhccC
Q 008585 472 PQNCREV-------KRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSKKCKKLMISY-------GAIGYLKKLSEMD 537 (560)
Q Consensus 472 ~~~~~~~-------~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~i~~~-------g~i~~L~~L~~~~ 537 (560)
+.....+ ..=...+..++.-+...+....-++.+.+...|+.++..|..+.+. |....+. .+
T Consensus 176 d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l----~~ 251 (268)
T 2fv2_A 176 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVL----KD 251 (268)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTHHHH----TS
T ss_pred chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHHHHH----hc
Confidence 6543332 2212344555555555555567789999999999999999888652 3222222 36
Q ss_pred chhHHHHHHHHh
Q 008585 538 IPGARKLLERLE 549 (560)
Q Consensus 538 ~~~akkl~~~l~ 549 (560)
|+..|+.+.-|-
T Consensus 252 D~~~k~~l~qLl 263 (268)
T 2fv2_A 252 DTTTKRWLAQLV 263 (268)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777777766554
No 90
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.86 E-value=0.036 Score=63.30 Aligned_cols=328 Identities=10% Similarity=0.078 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-----CCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHH-
Q 008585 170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-----ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI- 243 (560)
Q Consensus 170 ~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-----~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv- 243 (560)
.+..++..|..+....++....... ..++..++++. ..+..+...++..+..++..+..+..+...+.++.++
T Consensus 262 vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~ 340 (960)
T 1wa5_C 262 VKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE 340 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHH
Confidence 4567788888887665543322221 34555566664 2347888999999999876554433321112344444
Q ss_pred ----Hhhh----c-----CC--------------HHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhc------cC
Q 008585 244 ----RLVE----S-----GS--------------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ------TG 290 (560)
Q Consensus 244 ----~lL~----~-----~~--------------~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~------~~ 290 (560)
..+. + ++ ...|..|..+|..++.... ..+. ...++.+...+. +.
T Consensus 341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~-~~~l~~i~~~l~~~~~~~~~ 417 (960)
T 1wa5_C 341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT-NIFLAHMKGFVDQYMSDPSK 417 (960)
T ss_dssp HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH-HHHHHHHHHHHHHHHC----
T ss_pred HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH-HHHHHHHHHHHHHhccCcch
Confidence 2221 0 01 1356677777777765432 1111 001233333444 46
Q ss_pred ChHHHHHHHHHHHHhcCCchhHHHHHhc-----CcHH----HHHHHhhcC---CchhHHHHHHHHHHHHccCChhHHHHH
Q 008585 291 DSVSQAAAACTLKNISAVPEVRQMLAEE-----GIVS----VMIKLLDCG---ILLGSKEYAAECLQNLTASNENLRRSV 358 (560)
Q Consensus 291 ~~~~~~~a~~aL~nLa~~~~~~~~i~e~-----g~v~----~L~~lL~~~---~~~~v~~~a~~~L~~La~~~~~~~~~i 358 (560)
++..+..|+.+++.++.....+..-... ...+ .++..+.++ ++ .+|..++++++.++..-. .+.
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p-~vr~~a~~~lg~~~~~~~--~~~- 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHI-ILRVDAIKYIYTFRNQLT--KAQ- 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCH-HHHHHHHHHHHHTGGGSC--HHH-
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCc-eehHHHHHHHHHHHhhCC--HHH-
Confidence 7788999999999997431101000000 1222 233445555 54 799999999999987421 111
Q ss_pred HhCCCHHHHHHhccC--CccHHHHHHHHHHhhcc-c---------cHHHHH--hCCcHHHHHHHHhcCC---HH--HHHH
Q 008585 359 VSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS-V---------SQEVLI--SLGFFPRLVHVLKAGS---LG--AQQA 419 (560)
Q Consensus 359 ~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~-~---------~~~~l~--~~~~i~~Lv~lL~~~~---~~--v~~~ 419 (560)
-...++.++..+.+ +.++..|+.+|.+++.. . .+..+. -...++.|+.+++... +. ....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 12236677777766 44789999999999872 1 122221 1234555666666541 11 2345
Q ss_pred HHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHc-----cCCHHHHHHHHHHHHHhcCC--ChhhHHHhhhCCChHHHHh
Q 008585 420 AASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLVTL--PQNCREVKRDDKSVPNLVQ 490 (560)
Q Consensus 420 A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~-----s~~~~v~~~A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~ 490 (560)
+..+|..++.. ++...++ ...++.|+..+. ..+...+....++|..++.. +.....+. ...++.+..
T Consensus 573 l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~ 648 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHH
Confidence 56666665422 2222211 123455555543 23556777889999988843 23333332 244566667
Q ss_pred ccCCCCchhhHHHHHHHHHHh
Q 008585 491 LLDPSPQNTAKKYAVACLASL 511 (560)
Q Consensus 491 lL~~~~~~~~~~~a~~~L~~L 511 (560)
.|+.... ....++..++..+
T Consensus 649 iL~~~~~-~~~~~~~~i~~~l 668 (960)
T 1wa5_C 649 VFSEDIQ-EFIPYVFQIIAFV 668 (960)
T ss_dssp HHHTTCT-TTHHHHHHHHHHH
T ss_pred HHHhhhH-hhHHHHHHHHHHH
Confidence 6765422 2444555554433
No 91
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.016 Score=55.81 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=122.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChHHHH--HHh-hC-CCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc----hH
Q 008585 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVL--AVM-GR-SNIAALVQLLTATSPRIREKTVTVICSLAESGS----CE 230 (560)
Q Consensus 159 Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~--~i~-~~-g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~ 230 (560)
+-.+|.+.+-..|.+|+..|..+....+.... ... .- ...+.+-..+++.+..++..++.++..++..-. .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45788999999999999999998865442211 111 11 235566678888899999999999998876421 11
Q ss_pred H--HHHhCCCHHHHHH-hhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC
Q 008585 231 N--WLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307 (560)
Q Consensus 231 ~--~l~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~ 307 (560)
. ...-..+++.|+. .+.+....++..+..++..+.........+ ++.++..+.+.+|.++..++..|.++..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 1222345677774 578888889998888887775432211112 2666677888999999999888887743
Q ss_pred C--ch-h-HHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 308 V--PE-V-RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 308 ~--~~-~-~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
. .. . ..... ..+++.+..++.+.+. .||..|..++..+-.
T Consensus 169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~-~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDR-NVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHH-HHHGGGHHHHHTCSSH-HHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHH-HHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHH
Confidence 1 11 1 11111 1245567778888886 899999999988865
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.53 E-value=0.0056 Score=63.00 Aligned_cols=239 Identities=12% Similarity=0.137 Sum_probs=153.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---hHHHHHhCCCHHHHHHhhhc----------CCHHHHHHHHHHHHHh
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPPLIRLVES----------GSTVGKEKATISLQRL 264 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~Lv~lL~~----------~~~~~~~~a~~~L~~L 264 (560)
.+.|+.-|=++.+++|.-|+.+|..+..... .+..-.+....-.++-++.- --.++|+.++.+|..+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 4556666667789999999999999865432 11100111223333333321 1347999999999999
Q ss_pred hCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHH
Q 008585 265 SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL 344 (560)
Q Consensus 265 a~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L 344 (560)
..-+.. ..++..++..+..+.++++..++-.|.++. +.... -.++++.++.-|.+.++ +|+..|+.+|
T Consensus 256 -~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DD-DVRAVAAetL 323 (800)
T 3oc3_A 256 -YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDE-DIKLLSAELL 323 (800)
T ss_dssp -TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSH-HHHHHHHHHH
T ss_pred -HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCccc-HHHHHHHHHh
Confidence 652221 455566666667789999999999999992 21111 24568888888888886 8999999999
Q ss_pred HHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHH
Q 008585 345 QNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQA 419 (560)
Q Consensus 345 ~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~ 419 (560)
.-++. .+. -..+ +..+...|.+ .......+..|..|+. +.. .-.....+|+|..++++.-+.|+..
T Consensus 324 iPIA~-p~~-l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 324 CHFPI-TDS-LDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp TTSCC-SST-HHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhcc-hhh-HHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence 99982 111 1111 3344444432 3345667778888877 321 1112377999999999999999999
Q ss_pred HHHHHHHHhCChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 008585 420 AASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466 (560)
Q Consensus 420 A~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~ 466 (560)
+..++..+. ..+.-+.+. -+++-..+++++..+..+-.
T Consensus 395 VL~TL~tfL-~~~~LRLIF--------QNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS-EESIDFLVA--------EVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC-CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence 999998887 222222221 12334577888887777664
No 93
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.44 E-value=0.062 Score=49.90 Aligned_cols=171 Identities=20% Similarity=0.248 Sum_probs=121.3
Q ss_pred HHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCCc--hHHHHHhCCCHHHHHHhh
Q 008585 174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLV 246 (560)
Q Consensus 174 A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL 246 (560)
|+.-|..++ .+++.+..+.++...-.|-.+|+..+ ..+|-.++.+++.|...++ ....+.+.+++|..++.+
T Consensus 76 aLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 76 ALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 343444444 58889999999888888888887654 5778899999999987654 677888999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhCChhhHHHHHhC--------CChHHHH-HHhccCChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585 247 ESGSTVGKEKATISLQRLSMSAEMARAIVGH--------GGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317 (560)
Q Consensus 247 ~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~--------g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (560)
+.|+.-.+..|..++.++-.++..-..+.+. .++..++ .+.+++++.+..+..++-..|+.++..+..+..
T Consensus 155 e~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999998777665444331 1222222 233567889999999999999999988888764
Q ss_pred c--CcH--HHHHHHhhcCCchhHHHHHHHHHHHH
Q 008585 318 E--GIV--SVMIKLLDCGILLGSKEYAAECLQNL 347 (560)
Q Consensus 318 ~--g~v--~~L~~lL~~~~~~~v~~~a~~~L~~L 347 (560)
. ..+ ..+..+++ ++. .++.+-...+.|+
T Consensus 235 ~LP~~Lrd~tf~~~l~-~D~-~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 235 CLPDQLKDTTFAQVLK-DDT-TTKRWLAQLVKNL 266 (268)
T ss_dssp HSCGGGTSSTTHHHHT-SCH-HHHHHHHHHHHHS
T ss_pred hCcHHhhChHHHHHHh-cCH-HHHHHHHHHHHhc
Confidence 1 000 11222232 232 5666666666654
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.38 E-value=0.26 Score=56.11 Aligned_cols=212 Identities=18% Similarity=0.153 Sum_probs=125.0
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh---hcCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChH
Q 008585 206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV---ESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVR 281 (560)
Q Consensus 206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~ 281 (560)
.+.++..++.++.+++.++...... ....++.++..+ .++++.++..+++++.+++.. .+.. .. -...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHHHH
Confidence 4567889999999999999764310 012344444443 335788999999999999753 2222 22 246788
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCC-chhHHHHHHHHHHHHccCCh-hHHHH
Q 008585 282 PLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNE-NLRRS 357 (560)
Q Consensus 282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~-~~~v~~~a~~~L~~La~~~~-~~~~~ 357 (560)
.++..+.+ +.++..|+.+|.+++. +.+..+.. ...+..+..++.+++ +...+.....+++.++...+ .....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88888854 8899999999999984 22222221 234555666666532 23688888999999886432 22222
Q ss_pred HHhCCCHHHHHHhcc----C---CccH---HHHHHHHHHhhc--c--cc-------------------HHHHHhCCcHHH
Q 008585 358 VVSEGGIRSLLAYLD----G---PLPQ---ESAVGALRNLVG--S--VS-------------------QEVLISLGFFPR 404 (560)
Q Consensus 358 i~~~g~l~~L~~ll~----~---~~~~---~~a~~~L~nla~--~--~~-------------------~~~l~~~~~i~~ 404 (560)
.+ ...++.+...+. . ++.+ ...+.+|+.+.. . .. .-.-....+++.
T Consensus 609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (963)
T 2x19_B 609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence 22 122333433332 2 1122 234455554444 1 00 011122334555
Q ss_pred HHHHHhc--CCHHHHHHHHHHHHHHh
Q 008585 405 LVHVLKA--GSLGAQQAAASALCRVC 428 (560)
Q Consensus 405 Lv~lL~~--~~~~v~~~A~~aL~~La 428 (560)
+..++.. .+..+.+.++.++..++
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHH
Confidence 5556643 46789999999998875
No 95
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.28 E-value=0.12 Score=58.93 Aligned_cols=210 Identities=15% Similarity=0.079 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh---h--cCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChH
Q 008585 208 TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV---E--SGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVR 281 (560)
Q Consensus 208 ~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL---~--~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~ 281 (560)
.+...++.++.+++.++....... ...++.++.++ . +.++.++..+++++..++.. .++...+ ...++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 467889999999999987543111 12344444433 2 34888999999999998752 1111101 12345
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh--cCcHHHHHHHhhcCC-chhHHHHHHHHHHHHccCCh-hHHHH
Q 008585 282 PLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNE-NLRRS 357 (560)
Q Consensus 282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~v~~L~~lL~~~~-~~~v~~~a~~~L~~La~~~~-~~~~~ 357 (560)
.|+..+ + +.++..|+.++.+++. +.+..+.. ...+..+.+++.+++ +...+..+..+++.++..-+ .....
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 666666 3 7889999999999984 33344432 456667777777642 23788899999999876321 21212
Q ss_pred HHhCCCHHHHHHhc----cCCc----cHHHHHHHHHHhhc-----ccc----------HH--HHHhCCcHHHHHHHHhc-
Q 008585 358 VVSEGGIRSLLAYL----DGPL----PQESAVGALRNLVG-----SVS----------QE--VLISLGFFPRLVHVLKA- 411 (560)
Q Consensus 358 i~~~g~l~~L~~ll----~~~~----~~~~a~~~L~nla~-----~~~----------~~--~l~~~~~i~~Lv~lL~~- 411 (560)
.++ ..+++++..+ +.+. .+.....++..++. ... .+ .-....+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW 703 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc
Confidence 111 1233333332 2221 23344444444443 110 00 11224567777777764
Q ss_pred -CCHHHHHHHHHHHHHHhC
Q 008585 412 -GSLGAQQAAASALCRVCT 429 (560)
Q Consensus 412 -~~~~v~~~A~~aL~~La~ 429 (560)
.+..+.+.+++++++++.
T Consensus 704 ~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 367999999999999874
No 96
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.12 E-value=1.6 Score=49.51 Aligned_cols=298 Identities=10% Similarity=0.049 Sum_probs=155.6
Q ss_pred CHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcC----------CchHHHHHh--CCCHHHHHHhhhcC--------CH
Q 008585 197 NIAALVQLLTA-----TSPRIREKTVTVICSLAES----------GSCENWLVS--EGVLPPLIRLVESG--------ST 251 (560)
Q Consensus 197 ~v~~Lv~lL~~-----~~~~v~~~A~~~L~~La~~----------~~~~~~l~~--~g~i~~Lv~lL~~~--------~~ 251 (560)
.++.|+.+... .+.++...++..+..++.. ...+..+.. ...++.++..+..+ ++
T Consensus 349 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~ 428 (971)
T 2x1g_F 349 IVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSS 428 (971)
T ss_dssp HHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCH
T ss_pred HHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCH
Confidence 45556665533 3577888898888777651 111111111 12444444444221 11
Q ss_pred -------HHHHHHHHHHHHhhCChh-h-HHHHHhCCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCCchhHHHHHh
Q 008585 252 -------VGKEKATISLQRLSMSAE-M-ARAIVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISAVPEVRQMLAE 317 (560)
Q Consensus 252 -------~~~~~a~~~L~~La~~~~-~-~~~l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~~~~~~~i~e 317 (560)
..|..+..+|..++.... . -..+. +.+-..+.. .++..+..++.+++.++.......
T Consensus 429 ~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~-----~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~---- 499 (971)
T 2x1g_F 429 DDLECFRCYRQDISDTFMYCYDVLNDYILEILA-----AMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE---- 499 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH-----HHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----
Confidence 345566677777665322 1 11111 222233332 578889999999999986321110
Q ss_pred cCcHHHHHHHh---h--cCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHHHhhcccc
Q 008585 318 EGIVSVMIKLL---D--CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS 392 (560)
Q Consensus 318 ~g~v~~L~~lL---~--~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~nla~~~~ 392 (560)
...++.++.++ . +.++ .++..++++++.++..-....+.+ ...++.++..++ +.++..|+.++.+++.. .
T Consensus 500 ~~~l~~l~~~l~~l~~~d~~~-~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~-~~v~~~A~~al~~l~~~-~ 574 (971)
T 2x1g_F 500 KRQIPRLMRVLAEIPYEKLNV-KLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN-SSMSAQATLGLKELCRD-C 574 (971)
T ss_dssp -CHHHHHHHHHHHSCTTTSCH-HHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH-SSCHHHHHHHHHHHHHH-C
T ss_pred hHHHHHHHHHHHhcCccccCH-HHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC-hHHHHHHHHHHHHHHHH-H
Confidence 12344444433 2 2344 799999999999875211100101 123555666664 88999999999999962 2
Q ss_pred HHHHH--hCCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhCC---hhHHHHHHhcCCHHHHHHHH----ccC--CHHHHH
Q 008585 393 QEVLI--SLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTS---AEMKKLVGEAGCTPLLIKLL----EAK--PNSVRE 459 (560)
Q Consensus 393 ~~~l~--~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~La~~---~~~~~~i~~~g~i~~Lv~ll----~s~--~~~v~~ 459 (560)
...+. -..++..+..++..+ +...+..+..+++.++.. ++....+ ...++++++.+ ... +++.+.
T Consensus 575 ~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ 652 (971)
T 2x1g_F 575 QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL--DIIVSPCFEELQAICQADSKTPAARI 652 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH--HHHHHHHHHHHHHHHTC---CHHHHH
T ss_pred HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHhcCCCChhhHH
Confidence 22221 234566667777763 578899999999998743 2222222 12344444433 332 333333
Q ss_pred HHHHHHHHhc---C--CC------------hhhHHHhhhCCChHHHHhccCCC-CchhhHHHHHHHHHHhC
Q 008585 460 VAAQAISSLV---T--LP------------QNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLS 512 (560)
Q Consensus 460 ~A~~aL~~L~---~--~~------------~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~~~~a~~~L~~L~ 512 (560)
....++..|+ . .. .....+. ...++.+.++++.. ..+.+.+.++.++..++
T Consensus 653 ~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 653 RTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAI 721 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3333443333 1 11 1112222 24556666666433 23457777777777654
No 97
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.89 E-value=0.0032 Score=59.32 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=101.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhC
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH 277 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~ 277 (560)
...+..+++++++.+|..++..|. .+.|..++++.++.+|..++.. +.
T Consensus 76 ~~~l~~L~~D~~~~VR~~aA~~L~-----------------~~~L~~ll~D~d~~VR~~aA~~---l~------------ 123 (244)
T 1lrv_A 76 VEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVADR---LP------------ 123 (244)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHHH---SC------------
T ss_pred HHHHHHHccCcCHHHHHHHHHHCC-----------------HHHHHHHHcCCCHHHHHHHHHh---CC------------
Confidence 455666677777888877775420 1346667778888888877763 21
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHH
Q 008585 278 GGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS 357 (560)
Q Consensus 278 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~ 357 (560)
.+.|..+++++++.+|..++.. +. .+.+..++++++. .|+..++.. +.
T Consensus 124 --~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~-~VR~~aa~~---l~--------- 171 (244)
T 1lrv_A 124 --LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDR-QVRKLVAKR---LP--------- 171 (244)
T ss_dssp --TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCH-HHHHHHHHH---SC---------
T ss_pred --HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCH-HHHHHHHHc---CC---------
Confidence 1234566677888888777763 21 1233455566665 777777664 11
Q ss_pred HHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHHH
Q 008585 358 VVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK 435 (560)
Q Consensus 358 i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~~ 435 (560)
.+.+..++.+ +.++..++.. + ..+.|..++.+.+..|+..++..+.
T Consensus 172 ------~~ll~~ll~D~d~~VR~aaa~~---l-------------~~~~L~~Ll~D~d~~VR~~aa~~l~---------- 219 (244)
T 1lrv_A 172 ------EESLGLMTQDPEPEVRRIVASR---L-------------RGDDLLELLHDPDWTVRLAAVEHAS---------- 219 (244)
T ss_dssp ------GGGGGGSTTCSSHHHHHHHHHH---C-------------CGGGGGGGGGCSSHHHHHHHHHHSC----------
T ss_pred ------HHHHHHHHcCCCHHHHHHHHHh---C-------------CHHHHHHHHcCCCHHHHHHHHHcCC----------
Confidence 1233344555 3455555543 2 2355677788888888888887642
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 008585 436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466 (560)
Q Consensus 436 ~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~ 466 (560)
.+.|..+ +..+..||..+...|.
T Consensus 220 -------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 -------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 3556666 8888889988876553
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.82 E-value=0.032 Score=57.59 Aligned_cols=242 Identities=14% Similarity=0.145 Sum_probs=153.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHh--hCCCHHHHHHhh--cC-----CC---HHHHHHHHHHHHH
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLL--TA-----TS---PRIREKTVTVICS 222 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~--~~g~v~~Lv~lL--~~-----~~---~~v~~~A~~~L~~ 222 (560)
....|+.-|-+..-+.|.-|+-+|+++++......-... +.+..-.|+-++ +. +| .-+||.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 667788888899999999999999999976542111111 112233333333 21 11 6799999999999
Q ss_pred HhcCCchHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHH
Q 008585 223 LAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL 302 (560)
Q Consensus 223 La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL 302 (560)
+ .+-+.. ..++..++..+....++++..+.-.|..+ .+.... =.++++.++.-|++.+.+++..|+.+|
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 543321 33455555566778999999999999998 111111 134467788888999999999999999
Q ss_pred HHhcCCchhHHHHHhcCcHHHHHHHhhcCCch-hHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccHHH
Q 008585 303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGILL-GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES 379 (560)
Q Consensus 303 ~nLa~~~~~~~~i~e~g~v~~L~~lL~~~~~~-~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~~~ 379 (560)
..++ .++... .++..+...|.+-++. .........|..|+...... -.....+|.|..++.+ +++|..
T Consensus 324 iPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 324 CHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp TTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHH
Confidence 9998 222221 2344444445443322 34555666777777644311 1123567888888887 678999
Q ss_pred HHHHHHHhhccccHHHHHhCCcHHHHH-HHHhcCCHHHHHHHHHHHH
Q 008585 380 AVGALRNLVGSVSQEVLISLGFFPRLV-HVLKAGSLGAQQAAASALC 425 (560)
Q Consensus 380 a~~~L~nla~~~~~~~l~~~~~i~~Lv-~lL~~~~~~v~~~A~~aL~ 425 (560)
++.++..+.. ..++..+. ++|-..+++++..+..+-.
T Consensus 395 VL~TL~tfL~---------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLSE---------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999988861 11333333 3455677888877776653
No 99
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.61 E-value=0.61 Score=45.24 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=165.4
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh-h----hHHHHHhCCChHHHHHHhcc-CChHHHHHHHHHHHHh
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-E----MARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNI 305 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~----~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL 305 (560)
.+...+.+..|+..|..-+.+.|..++.+..++-... + ....+.. --..|..+++. +++++-..+-..|+..
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 4556688999999999999999999999999886532 2 2233333 12333333333 4566666777788888
Q ss_pred cCCchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccCCccHHHHHHHHH
Q 008585 306 SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALR 385 (560)
Q Consensus 306 a~~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~~~~~~~a~~~L~ 385 (560)
..++..++.+.+.+.+..+++.+..++- ++..-|..++..+-..+....... + .
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~F-diasDAf~TfkelLt~Hk~lvaef------------L-------------~ 204 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTF-DIASDAFATFKDLLTRHKLLSAEF------------L-------------E 204 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSH-HHHHHHHHHHHHHHHSSHHHHHHH------------H-------------H
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHhccHHHHHHH------------H-------------H
Confidence 8999999999998889999999998886 788888888888776544321111 1 0
Q ss_pred HhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCChhHH----HHHHhcCCHHHHHHHHccCCHHHHHHH
Q 008585 386 NLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMK----KLVGEAGCTPLLIKLLEAKPNSVREVA 461 (560)
Q Consensus 386 nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~~~~~----~~i~~~g~i~~Lv~ll~s~~~~v~~~A 461 (560)
.+-+ .+....-.+|.+++.-+++.+...|+.+--+..+. +++.+..-+..++.+|.+++..+|..|
T Consensus 205 -----~nyd-----~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EA 274 (341)
T 1upk_A 205 -----QHYD-----RFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEA 274 (341)
T ss_dssp -----HTHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred -----HhHH-----HHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhh
Confidence 0111 25677778899999999999999999998664443 334444578999999999999999999
Q ss_pred HHHHHHhcCCChh---hHHHhhh--CCChHHHHhccCCC-Cc---hhhHHHHHHHHHHhC
Q 008585 462 AQAISSLVTLPQN---CREVKRD--DKSVPNLVQLLDPS-PQ---NTAKKYAVACLASLS 512 (560)
Q Consensus 462 ~~aL~~L~~~~~~---~~~~~~~--~~~v~~Lv~lL~~~-~~---~~~~~~a~~~L~~L~ 512 (560)
-.+.--...++.. ...++.. ++.+..|-....+. ++ ...|.+.+.-+..|-
T Consensus 275 FhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L~ 334 (341)
T 1upk_A 275 FHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK 334 (341)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred hhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence 9998888755433 2333321 12233333333333 22 245667777776664
No 100
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.38 E-value=0.66 Score=52.72 Aligned_cols=299 Identities=11% Similarity=0.078 Sum_probs=152.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc--h-HHHH---Hh--CCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCCh
Q 008585 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS--C-ENWL---VS--EGVLPPLIRLVESGSTVGKEKATISLQRLSMSA 268 (560)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~-~~~l---~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 268 (560)
.++.+.+.+. ++++++.|+.++..+..... . ...+ .. .+..+.+...+..++.......+..+..+....
T Consensus 242 ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~ 319 (963)
T 2x19_B 242 LIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENH 319 (963)
T ss_dssp HHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3555666663 56789999999999987432 1 1111 11 011222323334455555566666666664321
Q ss_pred hhHHHHHh--------CCChHHHHHHhcc-----CChHHHHHHHHHHHHhcCC---------chhHHHHHh--cCcHHHH
Q 008585 269 EMARAIVG--------HGGVRPLIEICQT-----GDSVSQAAAACTLKNISAV---------PEVRQMLAE--EGIVSVM 324 (560)
Q Consensus 269 ~~~~~l~~--------~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~---------~~~~~~i~e--~g~v~~L 324 (560)
. ..+.. ...+..++.+... .++.+...++..+..++.. +.....+.. ...++.+
T Consensus 320 ~--~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 397 (963)
T 2x19_B 320 S--RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL 397 (963)
T ss_dssp H--HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1 11110 1334445554443 2444444444444444330 111111111 2234444
Q ss_pred HHHhhcCCch--------------hHHHHHHHHHHHHccCCh-hHHHHHHhCCCHHHHHHhc----cCC--ccHHHHHHH
Q 008585 325 IKLLDCGILL--------------GSKEYAAECLQNLTASNE-NLRRSVVSEGGIRSLLAYL----DGP--LPQESAVGA 383 (560)
Q Consensus 325 ~~lL~~~~~~--------------~v~~~a~~~L~~La~~~~-~~~~~i~~~g~l~~L~~ll----~~~--~~~~~a~~~ 383 (560)
+.-+..+++. ..+..+..+|..++...+ ..-..+ ++.+...+ .++ ..++.++.+
T Consensus 398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~w~~~eaal~a 472 (963)
T 2x19_B 398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNL-----YDKLGRLLTSSEEPYSWQHTEALLYG 472 (963)
T ss_dssp HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-----HHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH-----HHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4444322110 123445555655553111 111111 22222333 222 357889999
Q ss_pred HHHhhccccHHHHHhCCcHHHHHHHHh---cCCHHHHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHH
Q 008585 384 LRNLVGSVSQEVLISLGFFPRLVHVLK---AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459 (560)
Q Consensus 384 L~nla~~~~~~~l~~~~~i~~Lv~lL~---~~~~~v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~ 459 (560)
++.++..-.. .....++.++..+. .+++.++..++++++.++.. .++.+.+ ...++.|+..+.. +.++.
T Consensus 473 l~~i~~~~~~---~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~~--~~V~~ 545 (963)
T 2x19_B 473 FQSIAETIDV---NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLHALGN--PELSV 545 (963)
T ss_dssp HHHHTTSCCS---SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHHHTTC--GGGHH
T ss_pred HHHHHhhcCc---hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHhCC--chHHH
Confidence 9999872100 01344566665552 35688999999999999854 2223333 4678889988854 78999
Q ss_pred HHHHHHHHhcCCCh-hhHHHhhhCCChHHHHhccCCCC-chhhHHHHHHHHHHhCC
Q 008585 460 VAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSP-QNTAKKYAVACLASLSP 513 (560)
Q Consensus 460 ~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~-~~~~~~~a~~~L~~L~~ 513 (560)
.|+.++.+++.... ....++. ..+..+.+++...+ ....+.....++..++.
T Consensus 546 ~A~~al~~l~~~~~~~l~p~~~--~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 546 SSVSTLKKICRECKYDLPPYAA--NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHHHHHHTGGGCTTTHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 99999999983211 1111111 22344455555432 33567777788877654
No 101
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.33 E-value=0.5 Score=45.84 Aligned_cols=221 Identities=12% Similarity=0.116 Sum_probs=160.4
Q ss_pred HHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh----HHHHHHh-CCCHHHHHHhccCCccHHHHHHHHHHh
Q 008585 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN----LRRSVVS-EGGIRSLLAYLDGPLPQESAVGALRNL 387 (560)
Q Consensus 313 ~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~----~~~~i~~-~g~l~~L~~ll~~~~~~~~a~~~L~nl 387 (560)
..+...+.+..++.-+..=+- +.|..+..+..++.....+ .-+++.. ...+..|+..-+++++-..+-..|+.+
T Consensus 72 ~ei~~~dll~~Li~~l~~L~f-E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDF-EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCH-HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCc-hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 445567888888888887775 7888899888888774432 2234443 335666666667788899999999999
Q ss_pred hc-cccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh-CChhHHHHHHhcC---CHHHHHHHHccCCHHHHHHHH
Q 008585 388 VG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAG---CTPLLIKLLEAKPNSVREVAA 462 (560)
Q Consensus 388 a~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La-~~~~~~~~i~~~g---~i~~Lv~ll~s~~~~v~~~A~ 462 (560)
.. ......+.....+..+.++++.++-++...|..++..+- ++......+...+ +...+-+++.+++--+|..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 98 455666777778889999999999999999999998865 5555554554443 577788899999999999999
Q ss_pred HHHHHhcCCChhhH---HHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCC----ChhhHHHHHH--cChhHHHHHh
Q 008585 463 QAISSLVTLPQNCR---EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP----SKKCKKLMIS--YGAIGYLKKL 533 (560)
Q Consensus 463 ~aL~~L~~~~~~~~---~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~----~~~~r~~i~~--~g~i~~L~~L 533 (560)
..|+.|..+..|.. .++.+...+..++.+|.+.. ..++-.|..++-...- .+...+.+.. ...+.+|.+.
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f 309 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF 309 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 99999998887754 44556666788889998874 3466677777764443 2234444443 4566777776
Q ss_pred hc
Q 008585 534 SE 535 (560)
Q Consensus 534 ~~ 535 (560)
..
T Consensus 310 ~~ 311 (341)
T 1upk_A 310 QN 311 (341)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 102
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.97 E-value=1.8 Score=50.52 Aligned_cols=298 Identities=12% Similarity=0.043 Sum_probs=166.7
Q ss_pred chHHHHHHHHccC--CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhcC---
Q 008585 154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL--TATSPRIREKTVTVICSLAES--- 226 (560)
Q Consensus 154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL--~~~~~~v~~~A~~~L~~La~~--- 226 (560)
..+..++..+.+. +.+.+.+|-..|.++-... ++...+...| .+.++.+|..|+..|.+....
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3355555554444 6667888887877764322 2333333333 345689999999999887643
Q ss_pred --Cc-hHHHHHhCCCHHHHHHhhh---cCCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCChHHHHHHH
Q 008585 227 --GS-CENWLVSEGVLPPLIRLVE---SGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299 (560)
Q Consensus 227 --~~-~~~~l~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~ 299 (560)
++ .+..+ +..++..+...-. +.+..++...+.++..++..+ +..| .+.++.|+.++.+ ++..+..++
T Consensus 81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L 154 (1204)
T 3a6p_A 81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVM 154 (1204)
T ss_dssp GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHH
T ss_pred cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHH
Confidence 22 33332 3233443333211 136788899999999986642 2222 3556888888865 566677788
Q ss_pred HHHHHhcCC-------chhH-----HHHHh--cCcHHHHHHHhhcC------------------CchhHHHHHHHHHHHH
Q 008585 300 CTLKNISAV-------PEVR-----QMLAE--EGIVSVMIKLLDCG------------------ILLGSKEYAAECLQNL 347 (560)
Q Consensus 300 ~aL~nLa~~-------~~~~-----~~i~e--~g~v~~L~~lL~~~------------------~~~~v~~~a~~~L~~L 347 (560)
.+|..++.. ...+ ..+.+ ..+++.+..++.+. ....+...++.++.+.
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 888887531 1111 12222 12333444444331 1113556667777655
Q ss_pred ccCChhHHHHHHhCC--CHHHHHHhccCCccHHHHHHHHHHhhc-cccHHH---HHh---CCcHHHHHHHHh--------
Q 008585 348 TASNENLRRSVVSEG--GIRSLLAYLDGPLPQESAVGALRNLVG-SVSQEV---LIS---LGFFPRLVHVLK-------- 410 (560)
Q Consensus 348 a~~~~~~~~~i~~~g--~l~~L~~ll~~~~~~~~a~~~L~nla~-~~~~~~---l~~---~~~i~~Lv~lL~-------- 410 (560)
..--+. ..+++.. .++.+..++.+++++..|+.+|..+.. ....+. ++. ..++..++..+.
T Consensus 235 l~Wi~~--~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~ 312 (1204)
T 3a6p_A 235 IDWVSM--SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLV 312 (1204)
T ss_dssp TTTSCH--HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCC
T ss_pred HhccCH--HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCc
Confidence 442221 2334433 677788888889999999999999997 221221 111 111334555542
Q ss_pred cCCHHHHHHHHHHHHHHhCChhHHHHHHh----------cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 411 AGSLGAQQAAASALCRVCTSAEMKKLVGE----------AGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 411 ~~~~~v~~~A~~aL~~La~~~~~~~~i~~----------~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
..+.++.+..+..+..++. +....+.+ .++++.++.+....+..+-..+...-..+..+
T Consensus 313 e~d~e~~k~l~~ll~~lg~--~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 313 EKHYVFLKRLCQVLCALGN--QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHHHH--HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 1135666666777777662 22222211 13577777777777777777777765556544
No 103
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.16 Score=48.59 Aligned_cols=181 Identities=12% Similarity=0.029 Sum_probs=116.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCC-ch--hHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCCh---hH
Q 008585 283 LIEICQTGDSVSQAAAACTLKNISAV-PE--VRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE---NL 354 (560)
Q Consensus 283 Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~--~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~---~~ 354 (560)
|-+-|.+.++..|..|+..|..+... +. ....... ....+.+-+.+.+.+. .++..++.++..++.... ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~-~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV-VAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHhhhhhcc
Confidence 55778889999999999999876532 11 1111111 2345566667777775 899999999998875221 11
Q ss_pred HH--HHHhCCCHHHHHHh-ccC--CccHHHHHHHHHHhhcc-ccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008585 355 RR--SVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVGS-VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428 (560)
Q Consensus 355 ~~--~i~~~g~l~~L~~l-l~~--~~~~~~a~~~L~nla~~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La 428 (560)
+. ...-...++.|+.- +.+ +.++..+..++..++.. .... .+++.+...+.+.++.++..++..|.++.
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 11 11113346666654 555 44677888888777652 1111 13566777888999999999999888875
Q ss_pred CC--h---hHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 008585 429 TS--A---EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471 (560)
Q Consensus 429 ~~--~---~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~ 471 (560)
.. . ..+..+ ..+++.+..++.+.++.||..|..++..+...
T Consensus 168 ~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 168 AAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 32 1 112111 13466788888999999999999999988643
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.85 E-value=0.84 Score=41.99 Aligned_cols=141 Identities=9% Similarity=0.044 Sum_probs=97.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHH-hhhcCCHHHHHHHHHHHHHhhC--ChhhHHHH
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSM--SAEMARAI 274 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~La~--~~~~~~~l 274 (560)
++....+.+++..++|..|+..|+.+ . .. ...++.+.. +-.+.+..+++.++.++..++. +++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence 34444566677789999999988887 2 11 124555655 5556799999999999999864 3432
Q ss_pred HhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh-cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChh
Q 008585 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN 353 (560)
Q Consensus 275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~ 353 (560)
.++.+...+.++++.+|+.|...+..-+..+..+ .+ .-+++.+-.+..+++. .||....+.|..++..+++
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~-yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSE-YVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCH-HHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHhhhCHH
Confidence 4577788899999999999998875433211110 11 1245656556666665 8999999999999998887
Q ss_pred HHHHHH
Q 008585 354 LRRSVV 359 (560)
Q Consensus 354 ~~~~i~ 359 (560)
.-..++
T Consensus 212 ~V~~~~ 217 (240)
T 3l9t_A 212 LVKIEL 217 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544333
No 105
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.78 E-value=0.38 Score=44.69 Aligned_cols=137 Identities=17% Similarity=0.153 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHHhCChhHHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh--h-hHHHh---------
Q 008585 413 SLGAQQAAASALCRVCTSAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ--N-CREVK--------- 479 (560)
Q Consensus 413 ~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~--~-~~~~~--------- 479 (560)
+...+..+..+|..+..+......+.. .+.+..|...+.++++.++..+.+.|..++..+. + ...++
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 467788899999999888666555544 4688999999999999999999999988885433 3 22222
Q ss_pred hhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh-------hhHHHHHHcChhHHHHHhhccCchhHHHHHHHHh
Q 008585 480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK-------KCKKLMISYGAIGYLKKLSEMDIPGARKLLERLE 549 (560)
Q Consensus 480 ~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l~ 549 (560)
.+..-...++..+..+.....+..++..+..+..++ ..|..+...|..+.+.+|-..++++-.+-++..+
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~fe 223 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFD 223 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHHHH
Confidence 223345678888876533334545555555555433 3677888999999999999888887776666554
No 106
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.59 E-value=1.8 Score=49.69 Aligned_cols=294 Identities=13% Similarity=0.092 Sum_probs=149.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCC--ch----HHHHHh--
Q 008585 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALV-QLLTATSPRIREKTVTVICSLAESG--SC----ENWLVS-- 235 (560)
Q Consensus 165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~--~~----~~~l~~-- 235 (560)
.++.+.+..++.++......-+-+ .+.+...++.+. .++. +++++..|+.+|..+.... +. ...+..
T Consensus 206 ~~~~~~~~~aL~~l~~~l~wi~~~--~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 206 GSSSSLIVATLESLLRYLHWIPYR--YIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCTH--HHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCCHH--HHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 345677888888888876644422 244455666666 3442 6899999999999998652 21 111111
Q ss_pred CCCHHHHHH-h----------h---hcCCHHHHHHHHHHHHHhhCC--------hhhHHHHHhCCChHHHHHHhccCChH
Q 008585 236 EGVLPPLIR-L----------V---ESGSTVGKEKATISLQRLSMS--------AEMARAIVGHGGVRPLIEICQTGDSV 293 (560)
Q Consensus 236 ~g~i~~Lv~-l----------L---~~~~~~~~~~a~~~L~~La~~--------~~~~~~l~~~g~i~~Lv~ll~~~~~~ 293 (560)
.+.+..+.. + . .+.+.+.....+..+..+... ++....+ ...++.++.....++.+
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~ 359 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERE 359 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHH
Confidence 111221111 1 1 112333334444444333211 1111111 12345555655666777
Q ss_pred HHHHHHHHHHHhcC----CchhHHHHHh--cCcHHHHHHHhhcCC------------------ch---hHHHHHHHHHHH
Q 008585 294 SQAAAACTLKNISA----VPEVRQMLAE--EGIVSVMIKLLDCGI------------------LL---GSKEYAAECLQN 346 (560)
Q Consensus 294 ~~~~a~~aL~nLa~----~~~~~~~i~e--~g~v~~L~~lL~~~~------------------~~---~v~~~a~~~L~~ 346 (560)
+...++..+..++. .+..+..+.. ...++.++..+..++ +. ..+..+..+|..
T Consensus 360 v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~ 439 (1049)
T 3m1i_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHH
Confidence 77777766666654 2211111111 123444444432110 00 123345667776
Q ss_pred HccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhccccH--HHHHhCCcHHHHHHHHhc-----CCHH
Q 008585 347 LTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKA-----GSLG 415 (560)
Q Consensus 347 La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~~~~--~~l~~~~~i~~Lv~lL~~-----~~~~ 415 (560)
++...+..--.+ ..+.+-+.+.+ ...++.++.+++.++..... +.-.-..+++.|..+... +.+.
T Consensus 440 l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~ 515 (1049)
T 3m1i_C 440 LTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV 515 (1049)
T ss_dssp HHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred HHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence 664322110001 12333333432 23578999999999862111 111112233334433221 2244
Q ss_pred HHHHHHHHHHHHhCC-hhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 008585 416 AQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470 (560)
Q Consensus 416 v~~~A~~aL~~La~~-~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~ 470 (560)
++..++++++.++.. ..+.+.+ ...++.+++.+.+.++.++..|+.++.+++.
T Consensus 516 v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 555688888887743 1222222 2457778888888889999999999999985
No 107
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.46 E-value=0.8 Score=45.94 Aligned_cols=137 Identities=17% Similarity=0.153 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHHhCChhHHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh--h-hHHHh---------
Q 008585 413 SLGAQQAAASALCRVCTSAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ--N-CREVK--------- 479 (560)
Q Consensus 413 ~~~v~~~A~~aL~~La~~~~~~~~i~~-~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~--~-~~~~~--------- 479 (560)
+...+..++.+|..+..+......+.. ..++..|...+.+.++.++..+.+.|..+|..+. + ...++
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence 457888999999999888666555554 4689999999999999999999999999885442 3 33322
Q ss_pred hhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh-------hhHHHHHHcChhHHHHHhhccCchhHHHHHHHHh
Q 008585 480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK-------KCKKLMISYGAIGYLKKLSEMDIPGARKLLERLE 549 (560)
Q Consensus 480 ~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l~ 549 (560)
.+..-...++..|+.......+.+++..+..+..++ ..|..+...|..+.+.+|-..++++-.+-++..+
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi~~fe 289 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFD 289 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHHHHHHH
Confidence 223446778888887533344545555555555432 3677888999999999998887766555444443
No 108
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.45 E-value=0.29 Score=55.73 Aligned_cols=295 Identities=13% Similarity=0.019 Sum_probs=154.7
Q ss_pred cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---hHHHHHhCCCHHH
Q 008585 165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPP 241 (560)
Q Consensus 165 ~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~ 241 (560)
..+++....++.++......-+- ..+++...++.+.++|.. +++++.|+.+|..+..... .+..++..=.+..
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 36778888999999999875442 245555678888888865 7999999999999987543 3333333211222
Q ss_pred HHHhhh--cCCHHHHHHHHHHHHHhh-------CCh-----hhHHHHH--hCCChHHHHHHhccCChHHHHHHHHHHHHh
Q 008585 242 LIRLVE--SGSTVGKEKATISLQRLS-------MSA-----EMARAIV--GHGGVRPLIEICQTGDSVSQAAAACTLKNI 305 (560)
Q Consensus 242 Lv~lL~--~~~~~~~~~a~~~L~~La-------~~~-----~~~~~l~--~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL 305 (560)
.+..+. .++.+..+..++.+..++ ..+ +.+.... -.+.++.++.++.+++.++-..++.-+..+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 222222 356666555444443331 111 1111111 136778888888888877765555544433
Q ss_pred cCCc-------hhHHHHHh--cCcHHHHHHHhhcC-----------Cc----hhHHHHHHHHHHHHccCChhHHHH-HHh
Q 008585 306 SAVP-------EVRQMLAE--EGIVSVMIKLLDCG-----------IL----LGSKEYAAECLQNLTASNENLRRS-VVS 360 (560)
Q Consensus 306 a~~~-------~~~~~i~e--~g~v~~L~~lL~~~-----------~~----~~v~~~a~~~L~~La~~~~~~~~~-i~~ 360 (560)
.... .....+.+ ...++.++.-+.-+ ++ .+.|......+..++.-.+...-. +.+
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~ 439 (980)
T 3ibv_A 360 LVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYS 439 (980)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3110 01111111 11233333333211 11 023333332233333222221111 000
Q ss_pred CCCHHH-HHHhccC-----CccHHHHHHHHHHhhc--cccHHHH-----HhCCcHHHHHHHHh-----cCCHHHHHHHHH
Q 008585 361 EGGIRS-LLAYLDG-----PLPQESAVGALRNLVG--SVSQEVL-----ISLGFFPRLVHVLK-----AGSLGAQQAAAS 422 (560)
Q Consensus 361 ~g~l~~-L~~ll~~-----~~~~~~a~~~L~nla~--~~~~~~l-----~~~~~i~~Lv~lL~-----~~~~~v~~~A~~ 422 (560)
.+.. +-+.+.+ -...|.++.+|++++. ......+ ....+++.+..+++ ...+.|+..+++
T Consensus 440 --~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~ 517 (980)
T 3ibv_A 440 --AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME 517 (980)
T ss_dssp --HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred --HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 1111 2222321 2347899999999987 2111000 00123455555655 466999999999
Q ss_pred HHHHHhCChhHHHHHHhcCCHHHHHHHH------ccCCHHHHHHHHHHHHHhcC
Q 008585 423 ALCRVCTSAEMKKLVGEAGCTPLLIKLL------EAKPNSVREVAAQAISSLVT 470 (560)
Q Consensus 423 aL~~La~~~~~~~~i~~~g~i~~Lv~ll------~s~~~~v~~~A~~aL~~L~~ 470 (560)
++++.+..-.. ....++.++..+ .+++..++..|+.++.+++.
T Consensus 518 ~l~rys~~~~~-----~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 518 ILVRYASFFDY-----ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHHHTGGGGGT-----CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 99998865211 113455555544 34667899999999999983
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.35 E-value=0.029 Score=52.72 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=41.6
Q ss_pred ccCCHHHHHHHHH-----HHHHHHhhChH-HHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCC
Q 008585 164 QIGHLEAKHKALD-----SLVEAMKEDEK-NVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG 237 (560)
Q Consensus 164 ~~~~~~~~~~A~~-----~L~~L~~~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g 237 (560)
+..+++++..++. .|..++.+.+. .+...+..-..+.|..+++++++.+|..++..+ .
T Consensus 60 ~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l---~------------- 123 (244)
T 1lrv_A 60 ADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRL---P------------- 123 (244)
T ss_dssp TCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS---C-------------
T ss_pred cCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhC---C-------------
Confidence 4445555555553 23333333222 222333322345677788888888888887632 1
Q ss_pred CHHHHHHhhhcCCHHHHHHHHH
Q 008585 238 VLPPLIRLVESGSTVGKEKATI 259 (560)
Q Consensus 238 ~i~~Lv~lL~~~~~~~~~~a~~ 259 (560)
.+.+..++++.++.+|..++.
T Consensus 124 -~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 124 -LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp -TGGGGGGTTCSSHHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHH
Confidence 122444456666666666554
No 110
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.28 E-value=0.53 Score=45.56 Aligned_cols=164 Identities=14% Similarity=0.087 Sum_probs=97.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHH----HHHhhhc-CCHHHHHHHHHHHHHhhCChhhHH
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPP----LIRLVES-GSTVGKEKATISLQRLSMSAEMAR 272 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~----Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~ 272 (560)
+..+.++++-+ .+.+--++..++.+..++.....+.+.+.-.. +...+.+ ..+..+..++++++|+..++..+.
T Consensus 105 l~~l~kil~WP-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAINCP-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHHTSC-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHcCC-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 45556665433 23444555666666655544444443322233 3333432 356678899999999998888777
Q ss_pred HHHhC--CChHHHHHHhccCChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 273 AIVGH--GGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 273 ~l~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
.+... .+++.+...+.+.+..++..++..+.|++... ..+..=....++..+..+++...+.+..+.++.+|+++..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 66542 23333444444568899999999999998521 0000000122455555666655555899999999999998
Q ss_pred CChhHHHHHHhCC
Q 008585 350 SNENLRRSVVSEG 362 (560)
Q Consensus 350 ~~~~~~~~i~~~g 362 (560)
.+...++..-..|
T Consensus 264 ~~~~~~~lak~l~ 276 (304)
T 3ebb_A 264 DDSNAVQLAKSLG 276 (304)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CChhHHHHHHHcC
Confidence 7666544333333
No 111
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.19 E-value=3.3 Score=47.49 Aligned_cols=217 Identities=12% Similarity=0.106 Sum_probs=132.1
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC-----c
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAESG-----S 228 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~~-----~ 228 (560)
.+..++..+.+++.+.+.+|-..|.++-. ++ +....+..+|. +.++.+|..|+..|.+..... +
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 35566666667777778778777766633 33 34555666664 456899999999999876431 2
Q ss_pred -hHHHHHhCCCHHHHHHhhhcC-----CHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHH
Q 008585 229 -CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301 (560)
Q Consensus 229 -~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a 301 (560)
.+..+ +...+..+...-.+. +..++...+.++..++.. -+..| .+.++.|+..++ .++..+..++.+
T Consensus 87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-SSVNVCENNMIV 160 (1049)
T ss_dssp HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-cChHHHHHHHHH
Confidence 33332 222333333322111 366788888888888664 12222 355688888886 566666777777
Q ss_pred HHHhcCC-----c----hh-----HHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHH
Q 008585 302 LKNISAV-----P----EV-----RQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR 365 (560)
Q Consensus 302 L~nLa~~-----~----~~-----~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~ 365 (560)
|..++.. . .. +..+.+ ..++..+..++.+.....++..++.++.....--+. ..+.+...++
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~ 238 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILE 238 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHH
Confidence 7777521 0 01 122332 223444555565544347889999999887653332 2355566666
Q ss_pred HHH-HhccCCccHHHHHHHHHHhhc
Q 008585 366 SLL-AYLDGPLPQESAVGALRNLVG 389 (560)
Q Consensus 366 ~L~-~ll~~~~~~~~a~~~L~nla~ 389 (560)
.+. .++.++..+..|+.+|..+..
T Consensus 239 ~l~~~~l~~~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 239 LLSTKFMTSPDTRAITLKCLTEVSN 263 (1049)
T ss_dssp HHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHhHHHHHHHHHHHHHh
Confidence 666 345567888999999998886
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.58 E-value=5.3 Score=40.65 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=99.0
Q ss_pred cCCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHH
Q 008585 248 SGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK 326 (560)
Q Consensus 248 ~~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~ 326 (560)
.++...+..|+..+.+...+ |+....- +..++++|.+.+..+|..|...|..+|.+ ++..+ +..+|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence 35788999999999999765 6655432 38999999999999999999999999987 55443 4678899
Q ss_pred HhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhc-cC-CccHHHHHHHHHHhhcc---ccHHHHHhCCc
Q 008585 327 LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-DG-PLPQESAVGALRNLVGS---VSQEVLISLGF 401 (560)
Q Consensus 327 lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll-~~-~~~~~~a~~~L~nla~~---~~~~~l~~~~~ 401 (560)
+|..++. .-...+-.+|..+...++... +..++.-+ .+ +.+|+.++.+|..=..+ +....-.+.-+
T Consensus 108 lLqtdd~-~E~~~V~~sL~sllk~Dpk~t--------l~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 108 LLQTDDS-AEFNLVNNALLSIFKMDAKGT--------LGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HTTCCCH-HHHHHHHHHHHHHHHHCHHHH--------HHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHhccch-HHHHHHHHHHHHHHhcChHHH--------HHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 9997775 444455555665655444321 33333333 22 55788888887665541 11111122334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008585 402 FPRLVHVLKAGSLGAQQAAASALCR 426 (560)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~ 426 (560)
+..+.+.|+.-...--......|..
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~ 203 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSG 203 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccHHHHHHHHHHHHh
Confidence 5555566644333322333344433
No 113
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.28 E-value=1.3 Score=42.70 Aligned_cols=173 Identities=14% Similarity=0.128 Sum_probs=101.6
Q ss_pred HHHHHHhccC-CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHH----HHHHhc-CCHHHHHHHHHHHHHHhCChhHHHH
Q 008585 364 IRSLLAYLDG-PLPQESAVGALRNLVG-SVSQEVLISLGFFPRL----VHVLKA-GSLGAQQAAASALCRVCTSAEMKKL 436 (560)
Q Consensus 364 l~~L~~ll~~-~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~L----v~lL~~-~~~~v~~~A~~aL~~La~~~~~~~~ 436 (560)
+..+.+++.= .+.+.+++..++.++. +.....+.+.+.-..+ ...+.. ..+..+..++++++|+..++..+..
T Consensus 105 l~~l~kil~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~ 184 (304)
T 3ebb_A 105 LQILWKAINCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKL 184 (304)
T ss_dssp HHHHHHHHTSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHH
T ss_pred HHHHHHHHcCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHH
Confidence 4455555521 4567888898888877 3333333333222333 333332 3577799999999999999888887
Q ss_pred HHhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCChhhHHHhhhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCC
Q 008585 437 VGEA--GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (560)
Q Consensus 437 i~~~--g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~ 514 (560)
+... ..++.+...+.+.+..+|..++..+.|++....+....-........+.++++...+.+...-++.+|.+|...
T Consensus 185 l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 185 MMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 7653 23444444445668889999999999998321110000000112344556665544445565677777777654
Q ss_pred h-hhHHHHHHcChhHHHHHhhcc
Q 008585 515 K-KCKKLMISYGAIGYLKKLSEM 536 (560)
Q Consensus 515 ~-~~r~~i~~~g~i~~L~~L~~~ 536 (560)
. ..+.....-|.-..+.++.+.
T Consensus 265 ~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 265 DSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp CHHHHHHHHHTTHHHHGGGGGGC
T ss_pred ChhHHHHHHHcCHHHHHHHHHhC
Confidence 4 344444445666666666655
No 114
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.02 E-value=1.6 Score=42.35 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=91.0
Q ss_pred HHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhc-CCchh
Q 008585 257 ATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC-GILLG 335 (560)
Q Consensus 257 a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~-~~~~~ 335 (560)
+...|.-|-.+.+.-.-++..+|+..+..+..-++.++.+..+..|..++.....+..=. ...+|.++..+.- +++ +
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eD-d 340 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDD-E 340 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCH-H
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCc-c
Confidence 334444445556667789999999999999999999999999999999987654442211 4578888888774 554 8
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc
Q 008585 336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372 (560)
Q Consensus 336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~ 372 (560)
+.+...+.|.|...+....++..+..|++..|-..+.
T Consensus 341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 9999999999999998889999999999999888874
No 115
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.72 E-value=1.8 Score=43.41 Aligned_cols=137 Identities=16% Similarity=0.144 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHHhCChhHHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCCh--h-hHHHh---------
Q 008585 413 SLGAQQAAASALCRVCTSAEMKKLVG-EAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ--N-CREVK--------- 479 (560)
Q Consensus 413 ~~~v~~~A~~aL~~La~~~~~~~~i~-~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~~~~~--~-~~~~~--------- 479 (560)
+...+..++.+|..+..+......+. ..+++..|...+.+.++.++..+++.|..+|..+. + ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 46778889999999988765555444 44788999999999999999999999988885433 3 22222
Q ss_pred hhCCChHHHHhccCCCCchhhHHHHHHHHHHhCCCh-------hhHHHHHHcChhHHHHHhhccCchhHHHHHHHHh
Q 008585 480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSK-------KCKKLMISYGAIGYLKKLSEMDIPGARKLLERLE 549 (560)
Q Consensus 480 ~~~~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~~-------~~r~~i~~~g~i~~L~~L~~~~~~~akkl~~~l~ 549 (560)
.+..-...++..+..+.....+.+++..+..+..++ ..|..|...|..+.+.+|-..++++-..-++..+
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe 227 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFD 227 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHH
Confidence 223345668888876543345555556666555433 3778889999999999998888876655555443
No 116
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=92.55 E-value=6.6 Score=44.57 Aligned_cols=286 Identities=12% Similarity=0.083 Sum_probs=159.5
Q ss_pred CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCC---CHHHHHHHHHHHHHHhc--CCc-h--HHHHHhCCC
Q 008585 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT---SPRIREKTVTVICSLAE--SGS-C--ENWLVSEGV 238 (560)
Q Consensus 167 ~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~v~~~A~~~L~~La~--~~~-~--~~~l~~~g~ 238 (560)
+++.|.+|-..|.++=. ++ ++......+|..+ ++.+|-.|+.+|.+... .++ + ....++..+
T Consensus 21 d~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~l 90 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRS-SS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSV 90 (980)
T ss_dssp CHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-Ch---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHH
Confidence 67888888877766643 33 3556666777553 68999999988887654 222 0 222223233
Q ss_pred HHHHHHhhh-cCCHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCCh-HHHHHHHHHHHHhcC----C---
Q 008585 239 LPPLIRLVE-SGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISA----V--- 308 (560)
Q Consensus 239 i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~----~--- 308 (560)
+..+.+.-. .++..++.+.+.++..+.... +..| .+.++.++.++..+++ ......+.+|..++. .
T Consensus 91 l~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~ 166 (980)
T 3ibv_A 91 WSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVL 166 (980)
T ss_dssp HHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccc
Confidence 444433110 246678888898888886531 1111 3445777777766444 334445555553321 0
Q ss_pred --c-------hhHHHHHhc---CcHHHHHHHhhc----CCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhcc
Q 008585 309 --P-------EVRQMLAEE---GIVSVMIKLLDC----GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372 (560)
Q Consensus 309 --~-------~~~~~i~e~---g~v~~L~~lL~~----~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~ 372 (560)
. +.++.+.+. .+++....++.. .++ .++..++.+|.....--+ -..+++.+.++.+.+++.
T Consensus 167 ~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~-~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~ 243 (980)
T 3ibv_A 167 KTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNY-GTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQ 243 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTT
T ss_pred cCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcC
Confidence 0 112233321 124444444433 444 788889999988876333 235666677888999998
Q ss_pred CCccHHHHHHHHHHhhc-cc---cHHHHHhCCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhC-------Ch-----hHH
Q 008585 373 GPLPQESAVGALRNLVG-SV---SQEVLISLGFFPRLVHVLK--AGSLGAQQAAASALCRVCT-------SA-----EMK 434 (560)
Q Consensus 373 ~~~~~~~a~~~L~nla~-~~---~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~A~~aL~~La~-------~~-----~~~ 434 (560)
++..+..|+.+|..+.. .. ....++..=.+...+..+. .+|.+..+..++.+..++. .+ +.+
T Consensus 244 ~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~ 323 (980)
T 3ibv_A 244 IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELK 323 (980)
T ss_dssp SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhh
Confidence 89999999999999987 22 2222221101122222222 3566665545544444331 11 111
Q ss_pred HHHH--hcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 435 KLVG--EAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 435 ~~i~--~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.... -.+.++.++..+..++.++-..+...+..+.
T Consensus 324 ~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 324 ENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp HHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 1110 1257888888887777777766666655554
No 117
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.13 E-value=3.6 Score=38.70 Aligned_cols=174 Identities=14% Similarity=0.061 Sum_probs=107.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHh----hcCCchhHHHHHHHHHHHHcc----CCh
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL----DCGILLGSKEYAAECLQNLTA----SNE 352 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL----~~~~~~~v~~~a~~~L~~La~----~~~ 352 (560)
+.+...+-+.+..-+..++..|..... .+...+.. .+..+++.+ .+.+. .+...++.+|..+.. .+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~--~lDll~kw~~lr~~d~N~-~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLS--NSDLLLKWCTLRFFETNP-AALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHH--THHHHHHHHHHHTTSCCH-HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHH--HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHhccc
Confidence 334444445566666667666665432 11222221 233333332 24443 677788888777643 100
Q ss_pred hHHHHHHhCCCHHHHHHhccC--CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhCC
Q 008585 353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430 (560)
Q Consensus 353 ~~~~~i~~~g~l~~L~~ll~~--~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~ 430 (560)
....+- -.-.+|.|+.-+-+ ..+|+.+-.++..++.-... ..+.+.++.-+++.+..++..++..+..+-..
T Consensus 124 ~~~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 124 PMSQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-----LKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCCHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 000000 01137788887766 34788888887777651111 22577888888999999999999999988632
Q ss_pred hhHHHHHHhcCCH---HHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 431 AEMKKLVGEAGCT---PLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 431 ~~~~~~i~~~g~i---~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
.... ....+ +.+.+++.+.+..||..|..++..+.
T Consensus 198 ~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 198 AGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1111 23468 99999999999999999999999775
No 118
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.77 E-value=1.2 Score=50.96 Aligned_cols=135 Identities=13% Similarity=-0.008 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhc-----CCHHHHHHHHHHHHHhhC----ChhhHHHHHhC
Q 008585 208 TSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVES-----GSTVGKEKATISLQRLSM----SAEMARAIVGH 277 (560)
Q Consensus 208 ~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~La~----~~~~~~~l~~~ 277 (560)
.++..+|.++.+++.+++... ....-.-..+++.|+.++.. ....++..+++++++.+. +++.-.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~----- 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR----- 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----
Confidence 469999999999999997654 21211112367888888764 233455667788888754 222211
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHh------cCcHHHHHH----HhhcCCchhHHHHHHHHHHHH
Q 008585 278 GGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE------EGIVSVMIK----LLDCGILLGSKEYAAECLQNL 347 (560)
Q Consensus 278 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e------~g~v~~L~~----lL~~~~~~~v~~~a~~~L~~L 347 (560)
..+..|++.+.+..|.++.+|++++.+++. +++..+.. ...++.++. ....-+. ..+.....+++.+
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~-~~~~~lyeai~~v 616 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP-QQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence 223556666666778999999999999996 56666642 223444433 3333333 5567777888887
Q ss_pred ccC
Q 008585 348 TAS 350 (560)
Q Consensus 348 a~~ 350 (560)
...
T Consensus 617 i~~ 619 (1023)
T 4hat_C 617 ISE 619 (1023)
T ss_dssp HTT
T ss_pred HHh
Confidence 764
No 119
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.75 E-value=3.8 Score=37.83 Aligned_cols=148 Identities=17% Similarity=0.201 Sum_probs=95.4
Q ss_pred hhHHHHHhcCcHHHHHHHhhc----C------CchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC--CccH
Q 008585 310 EVRQMLAEEGIVSVMIKLLDC----G------ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQ 377 (560)
Q Consensus 310 ~~~~~i~e~g~v~~L~~lL~~----~------~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~--~~~~ 377 (560)
...+.| ..+++..|+.++.. + .+...+..++.||..+.....+....+....++..+...+++ +.++
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r 113 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 113 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 444555 45677777777753 1 123568889999999998766655444456788889888877 4567
Q ss_pred HHHHHHHHHhhc-c--cc-HHHHH----------hCCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhCCh-------hHHH
Q 008585 378 ESAVGALRNLVG-S--VS-QEVLI----------SLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSA-------EMKK 435 (560)
Q Consensus 378 ~~a~~~L~nla~-~--~~-~~~l~----------~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~La~~~-------~~~~ 435 (560)
..++..|..+|. + .+ ...+. +..-...+++.++. .+.+.+..+...+-.+..++ ..|.
T Consensus 114 ~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ 193 (233)
T 2f31_A 114 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 193 (233)
T ss_dssp HHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 788888888887 3 25 44431 22345667777774 45677777776666666542 3456
Q ss_pred HHHhcCCHHHHHHHHccCCHHHH
Q 008585 436 LVGEAGCTPLLIKLLEAKPNSVR 458 (560)
Q Consensus 436 ~i~~~g~i~~Lv~ll~s~~~~v~ 458 (560)
.+...|..+.+-++-...++++.
T Consensus 194 ef~~~Gl~~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 194 ELMRLGLHQVLQELREIENEDMK 216 (233)
T ss_dssp HHHHTTHHHHHHHHHHCCCHHHH
T ss_pred HHHHCChHHHHHHHhccCCHHHH
Confidence 66677865555554444555543
No 120
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.89 E-value=8.1 Score=44.15 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=134.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC-----c
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESG-----S 228 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~-----~ 228 (560)
.+..++..+..++.+.|.+|-..|.++- .++ ++...+..+|.. .++.+|-.|+..|.+..... +
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q-~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLK-EHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSS-CCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 4666777777778887877777775543 333 344445555644 46899999999999886632 2
Q ss_pred hHHHHHhCCCHHHHHHhhhc-----CCHHHHHHHHHHHHHhhCC-hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHH
Q 008585 229 CENWLVSEGVLPPLIRLVES-----GSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL 302 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~La~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL 302 (560)
....-++..++..+.+.-.+ .++.++.+.+.++..++.. .+..| .+.++.++..++. ++......+.+|
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W----p~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW----PTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc----cHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 22222333345555444322 2466677888888888653 11112 3455777777754 445556677777
Q ss_pred HHhcCC--c------------hhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585 303 KNISAV--P------------EVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS 366 (560)
Q Consensus 303 ~nLa~~--~------------~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~ 366 (560)
..|+.. + ..+..+.+ ..++..+..++.......+...++.+|.....--+- ..+++.+.++.
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~~ 251 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIFETKLIST 251 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHHH
Confidence 777531 0 11223333 224444445555544446778888999988873332 35778888888
Q ss_pred H-HHhccCCccHHHHHHHHHHhhc
Q 008585 367 L-LAYLDGPLPQESAVGALRNLVG 389 (560)
Q Consensus 367 L-~~ll~~~~~~~~a~~~L~nla~ 389 (560)
+ ..++.++..+..|+.+|..+..
T Consensus 252 L~~~~L~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 252 LIYKFLNVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHh
Confidence 7 5888888999999999999886
No 121
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.39 E-value=5.6 Score=36.50 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=91.7
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhc--CCchHH
Q 008585 156 TRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVICSLAE--SGSCEN 231 (560)
Q Consensus 156 i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~~La~--~~~~~~ 231 (560)
+..+...|. ....++|.-|+..|..+ ... ...++.+.. +-...+..+++.++.++..++. +++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 445555554 44467788888866665 211 123455555 4455679999999999999874 332
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCC---hhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHHHhcC-
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS---AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA- 307 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~---~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~- 307 (560)
..++.+....++++..+|..|...+.--+.. ..+...+ ++.|-.+..+++.-+|...++.|..++.
T Consensus 139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~l-----l~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEA-----IRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHH-----HHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHH-----HHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 1578888999999999999988886432211 1112221 2445555567888999999999999997
Q ss_pred CchhHHHHHh
Q 008585 308 VPEVRQMLAE 317 (560)
Q Consensus 308 ~~~~~~~i~e 317 (560)
+|+.-..+++
T Consensus 209 ~Pd~V~~~~~ 218 (240)
T 3l9t_A 209 FPDLVKIELK 218 (240)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5565555544
No 122
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.85 E-value=3.6 Score=46.94 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=135.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC-----Cc
Q 008585 155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAES-----GS 228 (560)
Q Consensus 155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~-----~~ 228 (560)
.+..++..+.+++.+.|.+|-..|.++-+ ++ ++...+..+|. +.++.+|-.|+..|.+.... ++
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~ 86 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHc-Cc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 46667777777777777777777766543 33 34555556664 45689999999999887653 22
Q ss_pred hHHHHHhCCCHHHHHHhhhcC-----CHHHHHHHHHHHHHhhCCh-hhHHHHHhCCChHHHHHHhccCChHHHHHHHHHH
Q 008585 229 CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL 302 (560)
Q Consensus 229 ~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~La~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL 302 (560)
.....++..++..+.+.-.++ ...++.+.+.++..++... +..| .+.++.++..+++ ++......+..|
T Consensus 87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W----p~~l~dL~~~l~~-~~~~~~~~L~iL 161 (1023)
T 4hat_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSSS-SVNVCENNMIVL 161 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc----hHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 222333334455555443222 3556677888888886532 1112 3456778888764 444556666666
Q ss_pred HHhcCC---------c-----hhHHHHHh--cCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCChhHHHHHHhCCCHHH
Q 008585 303 KNISAV---------P-----EVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS 366 (560)
Q Consensus 303 ~nLa~~---------~-----~~~~~i~e--~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~ 366 (560)
..|+.. . ..+..+.+ ..++..+..++.+....++...++.++.....--+ -..+++.+.++.
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~ 239 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILEL 239 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHH
Confidence 665321 1 11222233 23455555556554333788889999998876322 245677888899
Q ss_pred HH-HhccCCccHHHHHHHHHHhhc
Q 008585 367 LL-AYLDGPLPQESAVGALRNLVG 389 (560)
Q Consensus 367 L~-~ll~~~~~~~~a~~~L~nla~ 389 (560)
++ .++.++..+..|+.+|..+..
T Consensus 240 l~~~~L~~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 240 LSTKFMTSPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHc
Confidence 99 888888899999999999886
No 123
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.08 E-value=19 Score=35.78 Aligned_cols=172 Identities=13% Similarity=0.140 Sum_probs=110.6
Q ss_pred HHHHHccCCH-HHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhc
Q 008585 159 LLARLQIGHL-EAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 159 Ll~~L~~~~~-~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~ 225 (560)
.+..|+++.. +...+.+..|..-+..++ .....+. .+|+..|+.+|.. .+...+..++.+|..+..
T Consensus 71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN 149 (383)
T 3eg5_B 71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 149 (383)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc
Confidence 3445555432 223456677776666554 4455665 6788889888852 135778889999999988
Q ss_pred CCchHHHHH-hCCCHHHHHHhhhcCCHHHHHHHHHHHHHhhCChh--h-HHHHH----------hCCChHHHHHHhcc-C
Q 008585 226 SGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAIV----------GHGGVRPLIEICQT-G 290 (560)
Q Consensus 226 ~~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~-~~~l~----------~~g~i~~Lv~ll~~-~ 290 (560)
+......+. ....+..|+..|.+.++.++..+...|..++..++ + ...+. +..-...++..++. .
T Consensus 150 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~ 229 (383)
T 3eg5_B 150 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT 229 (383)
T ss_dssp SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccC
Confidence 776545444 55689999999999999999999999999887532 3 32222 24557778888876 4
Q ss_pred ChHHHHHHHHHHHHhcCC---ch----hHHHHHhcCcHHHHHHHhhcCC
Q 008585 291 DSVSQAAAACTLKNISAV---PE----VRQMLAEEGIVSVMIKLLDCGI 332 (560)
Q Consensus 291 ~~~~~~~a~~aL~nLa~~---~~----~~~~i~e~g~v~~L~~lL~~~~ 332 (560)
+.+.+..++..+-.+... -+ .|..+...|..+.+-+ ++..+
T Consensus 230 ~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~ 277 (383)
T 3eg5_B 230 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIE 277 (383)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSC
T ss_pred cHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCC
Confidence 556655555544444332 23 3445556777666655 55443
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.13 E-value=13 Score=42.50 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=94.6
Q ss_pred HHHHHHhcc----CChHHHHHHHHHHHHhc----CCchhHH-HHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccCC
Q 008585 281 RPLIEICQT----GDSVSQAAAACTLKNIS----AVPEVRQ-MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN 351 (560)
Q Consensus 281 ~~Lv~ll~~----~~~~~~~~a~~aL~nLa----~~~~~~~-~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~~ 351 (560)
..+..++.+ .++.++..+.-+++.|. .+...|. .++ ..+...+.+.+..++. +-+..++.+|+|+...
T Consensus 394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~-~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKE-EEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCCh-HHHHHHHHHhhccCCh-
Confidence 555566654 46677777777776664 2221111 110 1122334444555654 6778899999999752
Q ss_pred hhHHHHHHhCCCHHHHHHhccC---------CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHh--cCCHHHHHHH
Q 008585 352 ENLRRSVVSEGGIRSLLAYLDG---------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK--AGSLGAQQAA 420 (560)
Q Consensus 352 ~~~~~~i~~~g~l~~L~~ll~~---------~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~A 420 (560)
. .++.+.+++.. ..++..|+.+|+.++... ++ .+-+.++.+.. ..++++|..|
T Consensus 471 -~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~-----~v~~il~~i~~n~~e~~EvRiaA 534 (1056)
T 1lsh_A 471 -N---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR-----KVQEIVLPIFLNVAIKSELRIRS 534 (1056)
T ss_dssp -G---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH-----HHHHHHHHHHHCTTSCHHHHHHH
T ss_pred -h---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hH-----HHHHHHHHHhcCCCCChHHHHHH
Confidence 2 26667777632 135677999999887521 11 13455667774 3579999999
Q ss_pred HHHHHHHhCChhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcC
Q 008585 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVT 470 (560)
Q Consensus 421 ~~aL~~La~~~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~~ 470 (560)
+..|..-.-+. ..+..+...+.. .+..|.......|.+++.
T Consensus 535 ~~~Lm~t~P~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 535 CIVFFESKPSV---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHTCCCH---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCcCH---------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 88886543332 123344444443 566677777777777773
No 125
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=86.95 E-value=4.4 Score=38.65 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=93.5
Q ss_pred hHHHHHHHHccC------CHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhh--cCCCHHHHHHHHHHHHHHhcC
Q 008585 155 NTRELLARLQIG------HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL--TATSPRIREKTVTVICSLAES 226 (560)
Q Consensus 155 ~i~~Ll~~L~~~------~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL--~~~~~~v~~~A~~~L~~La~~ 226 (560)
.+......+++| +.+.-..|+..|.+++. +-++...|++.. ...|-.++ ....+.+++.|+++++.--++
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence 455566666777 44557788999999886 455555555422 33343333 344578999999999998887
Q ss_pred Cc-hHHHHHh--CCCHHHHHHhhhc-------CCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccC--ChHH
Q 008585 227 GS-CENWLVS--EGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DSVS 294 (560)
Q Consensus 227 ~~-~~~~l~~--~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~~ 294 (560)
.+ ....+.+ ...+..++.-|.. ....++..-+.+|..|..++. .| ...++..|.+++... ++.+
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHH
Confidence 75 4444433 2344444443433 244666777888888877752 12 256778888888777 8888
Q ss_pred HHHHHHHHHHhc
Q 008585 295 QAAAACTLKNIS 306 (560)
Q Consensus 295 ~~~a~~aL~nLa 306 (560)
+..++..+..+-
T Consensus 177 k~Kvl~li~d~f 188 (315)
T 3qml_C 177 QIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888877776553
No 126
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=85.78 E-value=8.7 Score=37.28 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=91.6
Q ss_pred HHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-hHHHHHhCCCHHHHHHhhhc-CCHHHH
Q 008585 177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVES-GSTVGK 254 (560)
Q Consensus 177 ~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~-~~~~~~ 254 (560)
-|.+++.++.....-++..+|+..+...+.-++.++.....+.|...+.... +...+ .+.+|.+++.++- ++.++.
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceE
Confidence 3445555666677788899999999999999999999999999999887654 22221 2357888887764 577888
Q ss_pred HHHHHHHHHhhCChh-hHHHHHhCCChHHHHHHhccC-------ChHHHHHHHHHHHH
Q 008585 255 EKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKN 304 (560)
Q Consensus 255 ~~a~~~L~~La~~~~-~~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~n 304 (560)
......|++...+.. .++.-...|+++.|...+... +..-+..+|+.++|
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 899999999977644 455555789999888877532 22344556665554
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.19 E-value=63 Score=36.83 Aligned_cols=196 Identities=11% Similarity=0.070 Sum_probs=114.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchHHHHHhCCCHHHHHHhhhc----CCHHHHHHHHHHHHHhh----CCh
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLS----MSA 268 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~La----~~~ 268 (560)
+..+.+++.+......+ |+.+|..+... .+..+ .+..+..++++ .++.++..+.-++..|. .+.
T Consensus 358 ~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~ 430 (1056)
T 1lsh_A 358 LLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT 430 (1056)
T ss_dssp HHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 55666677666533333 33333332221 11222 24555556654 35666776666666553 221
Q ss_pred hhHHHHHhCCChHH----HHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhc------CCchhHHH
Q 008585 269 EMARAIVGHGGVRP----LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC------GILLGSKE 338 (560)
Q Consensus 269 ~~~~~l~~~g~i~~----Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~------~~~~~v~~ 338 (560)
..+ ....++. +.+.+...+..-+..++.+|+|+... ..++.+.+++.. +.+..++.
T Consensus 431 ~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~ 496 (1056)
T 1lsh_A 431 VSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQA 496 (1056)
T ss_dssp SSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred CCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHH
Confidence 110 1112333 44445567777788999999998762 357777777642 12236788
Q ss_pred HHHHHHHHHccCChhHHHHHHhCCCHHHHHHhccC----CccHHHHHHHHHHhhccccHHHHHhCCcHHHHHHHHhc-CC
Q 008585 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA-GS 413 (560)
Q Consensus 339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~~~a~~~L~nla~~~~~~~l~~~~~i~~Lv~lL~~-~~ 413 (560)
.|+++|..++...+..- -+.++++..+ +++|..|+..|.... +.. ..+..+...+.. .+
T Consensus 497 aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~-------~~l~~ia~~l~~E~~ 560 (1056)
T 1lsh_A 497 EAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESK-PSV-------ALVSMVAVRLRREPN 560 (1056)
T ss_dssp HHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCH-------HHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHC-cCH-------HHHHHHHHHHhhCch
Confidence 89999999997655432 2345555533 566777776664332 211 246677777765 57
Q ss_pred HHHHHHHHHHHHHHhCC
Q 008585 414 LGAQQAAASALCRVCTS 430 (560)
Q Consensus 414 ~~v~~~A~~aL~~La~~ 430 (560)
..|.......|.+++.+
T Consensus 561 ~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 561 LQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888888888888865
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.07 E-value=36 Score=33.85 Aligned_cols=159 Identities=13% Similarity=0.168 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCCchHHHH-HhCCCH
Q 008585 173 KALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA----T-------SPRIREKTVTVICSLAESGSCENWL-VSEGVL 239 (560)
Q Consensus 173 ~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~----~-------~~~v~~~A~~~L~~La~~~~~~~~l-~~~g~i 239 (560)
+.+..|.-.+..++ .....+. .+|+..|+.+|.. . +...+..++.+|..+..+......+ ...+++
T Consensus 24 ~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 24 SCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHH
T ss_pred HHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHH
Confidence 34556655555444 4455554 5778888877742 1 3567888999999998877644444 455689
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHhhCChh--h-HHHHH----------hCCChHHHHHHhcc-CChHHHHHHHHHHHHh
Q 008585 240 PPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAIV----------GHGGVRPLIEICQT-GDSVSQAAAACTLKNI 305 (560)
Q Consensus 240 ~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~--~-~~~l~----------~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL 305 (560)
..+...|.+.++.++..+...|..++..++ . ...+. +..-+..++..+.. .+.+.+..++..+-.+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999988887543 3 32222 23456678887764 4445555555444444
Q ss_pred cCCc---h----hHHHHHhcCcHHHHHHHhhcCC
Q 008585 306 SAVP---E----VRQMLAEEGIVSVMIKLLDCGI 332 (560)
Q Consensus 306 a~~~---~----~~~~i~e~g~v~~L~~lL~~~~ 332 (560)
...+ + .|..+...|..+.+-++=..++
T Consensus 183 v~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~ 216 (386)
T 2bnx_A 183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIEN 216 (386)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCC
T ss_pred HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCC
Confidence 3322 2 3555666777666654433333
No 129
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.96 E-value=40 Score=34.34 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=90.3
Q ss_pred ccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHH
Q 008585 164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI 243 (560)
Q Consensus 164 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv 243 (560)
..|+...+.-|+.-+..+.+.-|+... ..+..++.++.+.+..+|.+|++.|-.++.+ +.... +.+.|+
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILT 106 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence 467788899999999999887775533 4678899999999999999999999999988 54333 478899
Q ss_pred HhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCCChHHHHHHhccCChHHHHHHHHHHH
Q 008585 244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK 303 (560)
Q Consensus 244 ~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~ 303 (560)
++|.++++.-...+-.+|..|-..+. +. .+..++..+..+++.+|..++.-|.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp-k~------tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA-KG------TLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH-HH------HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh-HH------HHHHHHHHHcccchHHHHHHHHHHH
Confidence 99999988877777777777643221 11 2245555555567777777666554
No 130
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=83.13 E-value=10 Score=43.31 Aligned_cols=211 Identities=12% Similarity=0.085 Sum_probs=126.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhhhc-CCHHHHHHHHHHHHHhhC------Chhh
Q 008585 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSM------SAEM 270 (560)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~------~~~~ 270 (560)
++.++..+-+++++.|..|-..|..+-.+++... .+..+|.. .++.+|..|+.+|.+... +++.
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~---------~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWT---------RVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHH---------HHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 5556666666778888899999988877765432 33333433 488899999999988743 2333
Q ss_pred HHHHHhCCChHHHHHHhcc-----CChHHHHHHHHHHHHhcC--CchhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHH
Q 008585 271 ARAIVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAEC 343 (560)
Q Consensus 271 ~~~l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~ 343 (560)
+..+ +...+..+.....+ .++.++...+.++..++. .++. -.+.++-++.++..+. ...+..+.+
T Consensus 101 ~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~~~--~~~~~~L~I 172 (1073)
T 3gjx_A 101 CEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRTSE--SLCQNNMVI 172 (1073)
T ss_dssp HHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHCH--HHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCCCH--HHHHHHHHH
Confidence 3333 33333444433322 245666777777777763 2211 1456677777776443 456777777
Q ss_pred HHHHccC---C--h--------hHHHHHHhCCCHHHHHHhc----cC---CccHHHHHHHHHHhhccccHHHHHhCCcHH
Q 008585 344 LQNLTAS---N--E--------NLRRSVVSEGGIRSLLAYL----DG---PLPQESAVGALRNLVGSVSQEVLISLGFFP 403 (560)
Q Consensus 344 L~~La~~---~--~--------~~~~~i~~~g~l~~L~~ll----~~---~~~~~~a~~~L~nla~~~~~~~l~~~~~i~ 403 (560)
|..|... . . ..++.+.+. ++.++.++ .+ +.+...++.+|+.+..=-....+.+.++++
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~ 250 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLIS 250 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHH
Confidence 7777652 1 0 112222222 44444443 22 345567788888888711234566788888
Q ss_pred HHH-HHHhcCCHHHHHHHHHHHHHHhC
Q 008585 404 RLV-HVLKAGSLGAQQAAASALCRVCT 429 (560)
Q Consensus 404 ~Lv-~lL~~~~~~v~~~A~~aL~~La~ 429 (560)
.++ .+| .++.++..|+.+|+.+..
T Consensus 251 ~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 251 TLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 774 555 577899999999999874
No 131
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=76.60 E-value=1.2e+02 Score=35.18 Aligned_cols=277 Identities=12% Similarity=0.086 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh--hcCCHHHHHHHHHHHHHhhC------ChhhHHHHHhCCCh
Q 008585 209 SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV--ESGSTVGKEKATISLQRLSM------SAEMARAIVGHGGV 280 (560)
Q Consensus 209 ~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~La~------~~~~~~~l~~~g~i 280 (560)
+...|.+|-..|..+-.+++ +...+...| .+.+..+|..|+..|.+... +++.+..+.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred ChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 57788889888888765543 334444433 34578899999999988742 333444443
Q ss_pred HHHHHHhcc-------CChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHccC-
Q 008585 281 RPLIEICQT-------GDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS- 350 (560)
Q Consensus 281 ~~Lv~ll~~-------~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~~- 350 (560)
..++..+.. ..+.++...+.++..++.. ++. -.+.++.++.++.++. ..++.++.+|..|+..
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~~~--~~~e~~L~iL~~L~Eev 164 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQGE--TQTELVMFILLRLAEDV 164 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHH
Confidence 334444432 3577888888888888742 211 1467888888887633 5678888888888642
Q ss_pred --C---hhHHH-----HHHhCCCHHHHHHh----ccC---------------------CccHHHHHHHHHHhhccccHHH
Q 008585 351 --N---ENLRR-----SVVSEGGIRSLLAY----LDG---------------------PLPQESAVGALRNLVGSVSQEV 395 (560)
Q Consensus 351 --~---~~~~~-----~i~~~g~l~~L~~l----l~~---------------------~~~~~~a~~~L~nla~~~~~~~ 395 (560)
. ...|. .+.+. ++.++.+ +.+ +.+...++.++.++..-.....
T Consensus 165 ~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~ 242 (1204)
T 3a6p_A 165 VTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242 (1204)
T ss_dssp HTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred ccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence 0 01111 12211 3333333 211 1234455666655544112233
Q ss_pred HHhCC--cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC---hhHHHHHHhc---CCHHHHHHHHc--------cCCHHHHH
Q 008585 396 LISLG--FFPRLVHVLKAGSLGAQQAAASALCRVCTS---AEMKKLVGEA---GCTPLLIKLLE--------AKPNSVRE 459 (560)
Q Consensus 396 l~~~~--~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~---~~~~~~i~~~---g~i~~Lv~ll~--------s~~~~v~~ 459 (560)
+.+.. .++.+..++. ++.++..|+.+|..+... ++.+..+... .++..++.... ..+.+...
T Consensus 243 i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k 320 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK 320 (1204)
T ss_dssp HHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred HHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence 33433 6777776655 577899999999999853 2332222211 11334444442 11234555
Q ss_pred HHHHHHHHhcCCChhhHHHhh------hC----CChHHHHhccCCCCchhhHHHHHHHHHHhCCC
Q 008585 460 VAAQAISSLVTLPQNCREVKR------DD----KSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514 (560)
Q Consensus 460 ~A~~aL~~L~~~~~~~~~~~~------~~----~~v~~Lv~lL~~~~~~~~~~~a~~~L~~L~~~ 514 (560)
.-++.+..+... ...++. .. ..++.++...... +..+...++..+..+.++
T Consensus 321 ~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~-~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 321 RLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHP-SQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCc-cHHhHHHHHHHHHHHHhc
Confidence 666666666511 111111 01 2245566666543 344565666666655544
No 132
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=74.07 E-value=7.4 Score=32.64 Aligned_cols=69 Identities=9% Similarity=0.012 Sum_probs=56.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|.++++.++..|+..|-.+.. +..++..+....++..|++++...++.|+...+..+..-+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 46677777888999999999988888874 3777777777778888888887788899999999888775
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=72.43 E-value=9.9 Score=32.78 Aligned_cols=69 Identities=7% Similarity=-0.014 Sum_probs=56.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|+++++.++..|+..|-.+..+ ..++..+....++..|++++.. .++.|+..++..+..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 466677778889999999999999888844 7788888777889999998875 56789999988887765
No 134
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=71.58 E-value=65 Score=29.91 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=72.9
Q ss_pred hhhchHHHHHHHHccCCHHHHHHHHHHHHHHHhh-ChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 008585 151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC 229 (560)
Q Consensus 151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~ 229 (560)
..+..+-+++...+....+.+...+....+++.+ ++..-. ..++.++.+....+.++|...+..+...+....
T Consensus 12 ~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~- 85 (257)
T 3gs3_A 12 TARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV- 85 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-
Confidence 3455577777777765557899999999997755 443222 356677777666779999999999988774432
Q ss_pred HHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh
Q 008585 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL 264 (560)
Q Consensus 230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 264 (560)
-....+++.|..+++++++.+...+..+..++
T Consensus 86 ---~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 86 ---ELLPHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11123577788888888888888777776665
No 135
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.38 E-value=9.8 Score=32.23 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=58.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s------~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|+++++.++..|+..|-.+.. +..++..+....++..|++++.. .+..|+..++..+..-+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 46677777889999999999999998884 47888888888899999999864 36789999998888776
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=70.72 E-value=12 Score=31.71 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=58.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhC--ChhHHHHHHhcCCHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~--~~~~~~~i~~~g~i~~Lv~ll~s------~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-+.++++.++..|+..|-.+.. ...++..+....++..|++++.. .+..|+...+..+..-+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 46677788889999999999999998884 47888888888899999999963 46789999999888876
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.42 E-value=14 Score=31.78 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=56.9
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~ 225 (560)
...++.+..+|+.+++.++..|+..|-.+.+.. +.....+.....+..|+++++. .++.+++.++..+..-+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 344677888999999999999998888887764 4455566666778888888875 568999999888877664
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.24 E-value=19 Score=30.46 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=58.8
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTA------TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~------~~~~v~~~A~~~L~~La~ 225 (560)
...++.+..+|+++++.++..|+..|-.+.+.. +.....+.....+..|+++++. .++.+++..+..+..-+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 444778888999999999999998888888764 4555677777888999999864 368999999988887765
Q ss_pred C
Q 008585 226 S 226 (560)
Q Consensus 226 ~ 226 (560)
.
T Consensus 117 ~ 117 (148)
T 1mhq_A 117 W 117 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=67.28 E-value=15 Score=30.63 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=56.4
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~ 225 (560)
...++.+..+|+.+++.++..|+..|-.+.+.. +.....+.....+..|+.+++..++.+++..+..+..-+.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 445778888999999999999988777777654 3344456566778888888877789999999988877664
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=67.04 E-value=9.5 Score=33.20 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=57.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s------~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|+++++.++..|+..|-.+..+ ..++..+....++..|++++.. .+..|+..++..+..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 466777888899999999999999998855 7788888888899999999963 35789999999888876
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=63.92 E-value=19 Score=31.25 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=58.1
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA------TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~------~~~~v~~~A~~~L~~La~ 225 (560)
...++.+..+|+++++.++..|+..|-.+.+... .....+.....+..|+.+++. .+..+++.++..+..-+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3447788899999999999999988888887654 455566676788899999863 358999999998887765
Q ss_pred C
Q 008585 226 S 226 (560)
Q Consensus 226 ~ 226 (560)
.
T Consensus 129 ~ 129 (171)
T 1juq_A 129 A 129 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 142
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=59.16 E-value=73 Score=30.30 Aligned_cols=133 Identities=11% Similarity=0.010 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhCCCHHHHHHhh--hcCCHHHHHHHHHHHHHhhCC-hhhHHHHHh--CCChHHHH
Q 008585 210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV--ESGSTVGKEKATISLQRLSMS-AEMARAIVG--HGGVRPLI 284 (560)
Q Consensus 210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~La~~-~~~~~~l~~--~g~i~~Lv 284 (560)
.+.-+.|+..|..++.+-++-..|.+.. .+.|-.++ ...++.+++.+++++..--.+ |+....+.. ...+..++
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 4456778888888887776545555422 33333333 345777899999998887665 666555543 34555555
Q ss_pred HHhcc-------CChHHHHHHHHHHHHhcCCchhHHHHHhcCcHHHHHHHhhcC--CchhHHHHHHHHHHHHc
Q 008585 285 EICQT-------GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG--ILLGSKEYAAECLQNLT 348 (560)
Q Consensus 285 ~ll~~-------~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~v~~L~~lL~~~--~~~~v~~~a~~~L~~La 348 (560)
.-|.. ....++..-+.+|-.|..++. .+. ...+..|.+++..+ .. .++..++..+..+-
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F~-~~~m~~L~~ly~~~~~d~-~~k~Kvl~li~d~f 188 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DLP-IYSTVVLQNVYERNNKDK-QLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hhh-hccHHHHHHHHccCCCCH-HHHHHHHHHHHHHc
Confidence 44433 233566777888888887652 121 34667777777655 54 78888888777665
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=57.58 E-value=34 Score=28.86 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=58.1
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA------TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~------~~~~v~~~A~~~L~~La~ 225 (560)
...++.+..+|++.++.++..|+..|-.+.+... .....+.....+..|+++++. .++.+++..+..+..-+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4457788899999999999999988877777654 344566666788889999863 468999999998888765
Q ss_pred C
Q 008585 226 S 226 (560)
Q Consensus 226 ~ 226 (560)
.
T Consensus 127 ~ 127 (149)
T 3g2s_A 127 G 127 (149)
T ss_dssp H
T ss_pred H
Confidence 3
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.98 E-value=18 Score=32.99 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=56.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|+++++.++..|+..|-.+..+ ..+...+....++..|++++.. .+..|+..++..+...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 466777888899999999999999998865 6678888777888888888864 56789999999888876
No 145
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=51.64 E-value=15 Score=34.29 Aligned_cols=132 Identities=8% Similarity=0.004 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCchHHHHHhCCCHHHHH-HhhhcCCHHHHHHHHHHHHHhhCChh-hHHHHHhCCChHHHHHHhcc-
Q 008585 213 REKTVTVICSLAESGSCENWLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQT- 289 (560)
Q Consensus 213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~La~~~~-~~~~l~~~g~i~~Lv~ll~~- 289 (560)
+--++..++.+..++..- +.+..++ ..+.+.++..+..++++++|+-.++. .+..+..+.....+++.+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~ 144 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 144 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHHcCCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHH
Confidence 444667777777666532 1222222 23345577899999999999988887 45544433223444444321
Q ss_pred -------CChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhhc----C----CchhHHHHHHHHHHHHccCChh
Q 008585 290 -------GDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDC----G----ILLGSKEYAAECLQNLTASNEN 353 (560)
Q Consensus 290 -------~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~~----~----~~~~v~~~a~~~L~~La~~~~~ 353 (560)
.+..++..++..+.|++..- ..+. +......+++.+.. . ++.+..+.++.+|+++...++.
T Consensus 145 ~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 145 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGG
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHH
Confidence 24567888889999997411 0000 12233444444442 1 1237888899999999875443
No 146
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.14 E-value=47 Score=33.30 Aligned_cols=133 Identities=9% Similarity=0.042 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhcCCchHHHHHhCCCHHHHH-HhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCC-ChHHHHHHhcc-
Q 008585 213 REKTVTVICSLAESGSCENWLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHG-GVRPLIEICQT- 289 (560)
Q Consensus 213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g-~i~~Lv~ll~~- 289 (560)
+--++.+|+.+..++..-. .+..++ ..+.+.++..+..++++++|+-.++.....+..+. ....+++.+.+
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 5557888888877765322 233333 33445678889999999999988887555444332 23455555421
Q ss_pred -------CChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhh---------cCCchhHHHHHHHHHHHHccCCh
Q 008585 290 -------GDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLD---------CGILLGSKEYAAECLQNLTASNE 352 (560)
Q Consensus 290 -------~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~---------~~~~~~v~~~a~~~L~~La~~~~ 352 (560)
.+..++..++..+.|++... ..+. +...+..+...+. ..+ .+..+.++.+|++|....+
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d-~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQEC-EEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTS-HHHHHHHHHHHHHHHHHCH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCC-HHHHHHHHHHHHHHHhcCH
Confidence 24567888888999997521 0000 1234445555555 123 3789999999999997655
Q ss_pred hHH
Q 008585 353 NLR 355 (560)
Q Consensus 353 ~~~ 355 (560)
..+
T Consensus 393 ~~~ 395 (425)
T 3pst_A 393 TLR 395 (425)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.08 E-value=90 Score=28.24 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=54.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCC--chhHHHHHhcCcHHHHHHHhhcCCchhHHHHHHHHHHHHcc
Q 008585 281 RPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349 (560)
Q Consensus 281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~v~~L~~lL~~~~~~~v~~~a~~~L~~La~ 349 (560)
+.|.+-+.+.+|.++..|+..|-.+..| ......+.....+..|.+++....+..|++.++..+..-+.
T Consensus 48 ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 48 NSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 6777888889999999999888887753 35666777777888888888765555899999998887764
No 148
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.25 E-value=30 Score=31.28 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=55.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~Lv~ll~s-~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|.++++.++..|+..|-.+..+ ..++..+....++..|++++.. .+..|+..+++.+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 356677778889999999999999998855 6677788777788888888864 46789998888887776
No 149
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=45.02 E-value=39 Score=33.14 Aligned_cols=133 Identities=8% Similarity=0.035 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHhCCCHHHHH-HhhhcCCHHHHHHHHHHHHHhhCChhhHHHHHhCC-ChHHHHHHhc--
Q 008585 213 REKTVTVICSLAESGSCENWLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHG-GVRPLIEICQ-- 288 (560)
Q Consensus 213 ~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~La~~~~~~~~l~~~g-~i~~Lv~ll~-- 288 (560)
+--++.+++.+..++..- +.+..++ ..+.+.++..+..+.++++|+-.++.....+..+. ....+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 445778888877776532 2233333 33445678899999999999988887544444332 1233444431
Q ss_pred ------cCChHHHHHHHHHHHHhcCCc-hhHHHHHhcCcHHHHHHHhh---------cCCchhHHHHHHHHHHHHccCCh
Q 008585 289 ------TGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLD---------CGILLGSKEYAAECLQNLTASNE 352 (560)
Q Consensus 289 ------~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~v~~L~~lL~---------~~~~~~v~~~a~~~L~~La~~~~ 352 (560)
..+..++..++..+.|++... ..+. +......+...+. ..+ .+..+.++.+|++|....+
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d-~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQEC-EEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTS-HHHHHHHHHHHHHHHHHCH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCC-HHHHHHHHHHHHHHHhcCH
Confidence 124567888888999997521 0000 1234445555555 124 3789999999999997555
Q ss_pred hHH
Q 008585 353 NLR 355 (560)
Q Consensus 353 ~~~ 355 (560)
..+
T Consensus 330 ~~~ 332 (362)
T 3l3f_X 330 TLR 332 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.05 E-value=58 Score=27.64 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=54.0
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcCCHHH-HHHHHcc---CCHHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLK-AGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPL-LIKLLEA---KPNSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g~i~~-Lv~ll~s---~~~~v~~~A~~aL~~L~ 469 (560)
++..|.+-|+ ++++.++..|+..|-.+..+ ..++..+.+..++.. |++++.. .+..|+..++..+..-+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4566777777 47899999999999888844 788888888888988 8888843 34578988888887775
No 151
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=43.16 E-value=2.1e+02 Score=28.14 Aligned_cols=105 Identities=21% Similarity=0.216 Sum_probs=68.8
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHh--------
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLA-------- 224 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La-------- 224 (560)
..+++.++..-...+.+.|...+..|.+.+..+.+... ..++.|..+|++.++.+...++.+..++-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44678888777777889999999999888876665532 25678888888888888877776655543
Q ss_pred cCCc-------hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh
Q 008585 225 ESGS-------CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL 264 (560)
Q Consensus 225 ~~~~-------~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 264 (560)
.++. .+..+.. .-..++.++.+++..++..+..++..+
T Consensus 137 ~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 1111 2222222 234455566667777777777766664
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.24 E-value=50 Score=29.78 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=55.5
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh-HHHHHHhhCCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~ 225 (560)
...++.+..+|+++++.++..|+..|-.+.+... .....+.....+..|+.+++. .+..+++.++..+..-+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3446778889999999999999988888887654 344566666778888888864 458899988888777664
No 153
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=40.92 E-value=2.7e+02 Score=27.36 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=72.8
Q ss_pred hchHHHHHHHHccCCHHHHHHHHHHHHHHHh-hChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchHH
Q 008585 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMK-EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231 (560)
Q Consensus 153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~-~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~ 231 (560)
+.-+-+++...+....+.+...+..+.+++- .++. +. ...++.++++-...+.++|...+..|...+.... +
T Consensus 24 ~~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~--e 96 (386)
T 3o2t_A 24 SERVVDLLNQAALITNDSKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI--E 96 (386)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG--G
T ss_pred HHHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH--H
Confidence 3345566665554333679999999999765 4442 22 3688999998888889999999999988775332 1
Q ss_pred HHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh
Q 008585 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRL 264 (560)
Q Consensus 232 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 264 (560)
.+ ..+++.|..+|++.++.+...+..+..++
T Consensus 97 l~--~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 97 LL--LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11 22577888888888888888877777665
No 154
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=38.52 E-value=91 Score=26.37 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=54.1
Q ss_pred hchHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhC-hHHHHHHhhCCCHHH-HHHhhcC---CCHHHHHHHHHHHHHHhc
Q 008585 153 HGNTRELLARLQ-IGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAA-LVQLLTA---TSPRIREKTVTVICSLAE 225 (560)
Q Consensus 153 ~~~i~~Ll~~L~-~~~~~~~~~A~~~L~~L~~~~-~~~~~~i~~~g~v~~-Lv~lL~~---~~~~v~~~A~~~L~~La~ 225 (560)
...++.+..+|+ .+++.++..|+..|-.+.+.. +.....+.....+.. |++++.. +...+++.++..+..-+.
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 344677888997 588999999998888888765 555556666677887 7888742 236889988888877654
No 155
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=33.98 E-value=2.8e+02 Score=25.49 Aligned_cols=104 Identities=12% Similarity=0.126 Sum_probs=68.3
Q ss_pred chHHHHHHHHccCCHHHHHHHHHHHHHHHhhChHHHHHHhhCCCHHHHHHhhcCCCHHHHHHHHHHHHHH--------hc
Q 008585 154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSL--------AE 225 (560)
Q Consensus 154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~L--------a~ 225 (560)
..++.++......+.+.|...+.-+.+.+...++... ..++.|..+|+.+++.+...++.+..++ +.
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466666655566788888888888888876664432 3577888889888888888777655444 33
Q ss_pred CCc-------hHHHHHhCCCHHHHHHhhhcCCHHHHHHHHHHHHHh
Q 008585 226 SGS-------CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL 264 (560)
Q Consensus 226 ~~~-------~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 264 (560)
++. ....+.. .=..+++.+.+++..++..+...+..+
T Consensus 128 ~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 128 LMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp SSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 321 2222222 334566667777888888888777765
No 156
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=33.00 E-value=82 Score=26.18 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=48.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhCC--hhHHHHHHhcC-CHHHHHHHHccCC--------HHHHHHHHHHHHHhc
Q 008585 401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAG-CTPLLIKLLEAKP--------NSVREVAAQAISSLV 469 (560)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~La~~--~~~~~~i~~~g-~i~~Lv~ll~s~~--------~~v~~~A~~aL~~L~ 469 (560)
+++.|.+-|+..++.++..|+..|-.|+.+ +.+...+.+.- .|..+.++-...+ ..||..|.+++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 577888888888999999999999999954 67777776553 2222222222222 348999988888875
Q ss_pred C
Q 008585 470 T 470 (560)
Q Consensus 470 ~ 470 (560)
.
T Consensus 130 d 130 (140)
T 1vdy_A 130 S 130 (140)
T ss_dssp C
T ss_pred C
Confidence 3
No 157
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.89 E-value=82 Score=29.08 Aligned_cols=97 Identities=8% Similarity=0.037 Sum_probs=62.9
Q ss_pred HHHhccC-CccHHHHHHHHHHhhc-cccHHHHHhCCcHHHHHH-HHhcCCHHHHHHHHHHHHHHhCChh-HHHHHHhcCC
Q 008585 367 LLAYLDG-PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVH-VLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGC 442 (560)
Q Consensus 367 L~~ll~~-~~~~~~a~~~L~nla~-~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~A~~aL~~La~~~~-~~~~i~~~g~ 442 (560)
+.+++.. | .+.+++..++.+.. +... +.+..++. .+.+.++..+..++++++|+-.++. .++.+.....
T Consensus 61 ~~ki~~~WP-~~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~ 133 (253)
T 3gae_A 61 ANTIRSNWE-IKTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQV 133 (253)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHH
T ss_pred HHHHHHhCC-ccchHHHHHHHHHcCCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchh
Confidence 3344444 5 68889999998887 3322 23333332 2334568899999999999998877 5666644323
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHHHHhcC
Q 008585 443 TPLLIKLLEA--------KPNSVREVAAQAISSLVT 470 (560)
Q Consensus 443 i~~Lv~ll~s--------~~~~v~~~A~~aL~~L~~ 470 (560)
...+++.+.+ .+..+|..++..+.|++.
T Consensus 134 ~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av 169 (253)
T 3gae_A 134 YKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSA 169 (253)
T ss_dssp HTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Confidence 3444444321 245688889999999983
Done!