Query 008587
Match_columns 560
No_of_seqs 401 out of 2618
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 14:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 99.9 3.3E-27 7.2E-32 212.4 14.7 127 54-181 1-127 (127)
2 cd02122 PA_GRAIL_like PA _GRAI 99.9 1.5E-21 3.2E-26 178.2 14.3 118 50-181 17-138 (138)
3 cd02123 PA_C_RZF_like PA_C-RZF 99.9 2.9E-21 6.3E-26 179.7 16.0 121 46-176 22-142 (153)
4 cd02126 PA_EDEM3_like PA_EDEM3 99.9 4.5E-21 9.8E-26 172.7 13.4 118 50-181 2-126 (126)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 7.3E-21 1.6E-25 169.1 14.2 114 54-182 1-117 (118)
6 cd02132 PA_GO-like PA_GO-like: 99.8 2.6E-20 5.6E-25 170.7 14.6 120 46-181 17-139 (139)
7 cd04813 PA_1 PA_1: Protease-as 99.8 3.3E-19 7.1E-24 158.2 11.6 106 50-173 5-111 (117)
8 cd02129 PA_hSPPL_like PA_hSPPL 99.8 4E-18 8.6E-23 151.0 11.4 96 67-177 23-118 (120)
9 cd04816 PA_SaNapH_like PA_SaNa 99.7 2.1E-17 4.5E-22 148.3 14.3 116 53-181 6-122 (122)
10 cd02130 PA_ScAPY_like PA_ScAPY 99.7 3.9E-17 8.5E-22 146.5 13.7 109 55-181 14-122 (122)
11 cd04818 PA_subtilisin_1 PA_sub 99.7 2.3E-16 5E-21 140.6 13.7 113 52-181 2-118 (118)
12 KOG3920 Uncharacterized conser 99.6 6.6E-17 1.4E-21 145.0 3.7 126 35-175 34-165 (193)
13 cd02124 PA_PoS1_like PA_PoS1_l 99.6 1.3E-15 2.8E-20 137.7 11.7 92 72-181 38-129 (129)
14 cd04817 PA_VapT_like PA_VapT_l 99.6 4.1E-15 9E-20 135.4 13.1 98 61-177 33-137 (139)
15 KOG4628 Predicted E3 ubiquitin 99.6 3.1E-15 6.7E-20 153.3 12.9 115 47-174 35-150 (348)
16 PF02225 PA: PA domain; Inter 99.5 5.1E-14 1.1E-18 121.3 6.2 98 60-171 2-101 (101)
17 cd00538 PA PA: Protease-associ 99.4 6.2E-13 1.3E-17 119.1 10.7 99 73-181 28-126 (126)
18 cd02133 PA_C5a_like PA_C5a_lik 99.4 7.2E-12 1.6E-16 115.5 14.0 100 53-173 15-114 (143)
19 KOG2442 Uncharacterized conser 99.3 2.9E-12 6.3E-17 134.0 10.3 121 48-183 55-177 (541)
20 cd04819 PA_2 PA_2: Protease-as 99.3 1.4E-11 3.1E-16 111.2 13.1 104 62-180 21-126 (127)
21 KOG1214 Nidogen and related ba 99.3 9.2E-12 2E-16 136.1 8.7 115 415-543 729-849 (1289)
22 cd04815 PA_M28_2 PA_M28_2: Pro 99.2 7.5E-11 1.6E-15 107.5 8.9 104 60-181 13-134 (134)
23 cd02120 PA_subtilisin_like PA_ 99.0 1.2E-09 2.5E-14 98.2 10.1 85 74-176 36-121 (126)
24 cd02128 PA_TfR PA_TfR: Proteas 98.9 1E-08 2.2E-13 97.5 10.4 115 54-174 19-156 (183)
25 KOG1214 Nidogen and related ba 98.5 1.7E-07 3.6E-12 103.5 7.6 82 419-520 782-865 (1289)
26 cd02121 PA_GCPII_like PA_GCPII 98.4 1.1E-06 2.4E-11 86.3 10.1 123 62-199 43-207 (220)
27 KOG1219 Uncharacterized conser 98.4 3.4E-07 7.3E-12 109.0 6.4 96 428-544 3865-3965(4289)
28 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 5.4E-06 1.2E-10 76.8 11.1 96 62-172 18-133 (151)
29 cd04814 PA_M28_1 PA_M28_1: Pro 98.2 4.2E-06 9E-11 76.7 7.9 72 50-130 9-100 (142)
30 cd02131 PA_hNAALADL2_like PA_h 98.1 6.6E-06 1.4E-10 75.4 6.9 105 61-173 12-139 (153)
31 cd04820 PA_M28_1_1 PA_M28_1_1: 98.1 1.3E-05 2.8E-10 73.0 8.2 63 62-130 20-96 (137)
32 PF07645 EGF_CA: Calcium-bindi 97.9 9E-06 2E-10 58.7 3.7 34 419-461 1-34 (42)
33 PF12662 cEGF: Complement Clr- 97.7 1.9E-05 4.1E-10 49.7 2.1 22 501-523 1-24 (24)
34 KOG1219 Uncharacterized conser 97.7 4.3E-05 9.4E-10 92.0 6.6 78 421-514 3897-3975(4289)
35 KOG4289 Cadherin EGF LAG seven 97.5 0.00013 2.7E-09 85.1 5.9 86 394-509 1219-1308(2531)
36 PF12947 EGF_3: EGF domain; I 97.4 0.00011 2.4E-09 51.1 2.9 36 423-468 1-36 (36)
37 PF12947 EGF_3: EGF domain; I 97.4 3.8E-05 8.2E-10 53.5 0.4 33 476-515 1-34 (36)
38 PF07645 EGF_CA: Calcium-bindi 97.4 9.5E-05 2.1E-09 53.4 1.8 33 470-511 1-34 (42)
39 PF14670 FXa_inhibition: Coagu 97.2 0.00025 5.4E-09 49.4 2.7 33 423-466 1-35 (36)
40 KOG4260 Uncharacterized conser 97.1 0.00031 6.8E-09 69.4 2.9 73 415-511 231-304 (350)
41 PF14670 FXa_inhibition: Coagu 96.9 0.00029 6.2E-09 49.1 0.6 33 476-518 1-36 (36)
42 KOG4289 Cadherin EGF LAG seven 96.7 0.0014 3E-08 77.0 3.9 55 442-514 1216-1272(2531)
43 smart00179 EGF_CA Calcium-bind 96.1 0.0051 1.1E-07 42.8 2.9 33 419-461 1-33 (39)
44 KOG4260 Uncharacterized conser 95.9 0.0039 8.3E-08 61.9 2.1 75 447-542 216-295 (350)
45 PF12662 cEGF: Complement Clr- 95.7 0.0065 1.4E-07 38.3 1.7 22 447-475 1-24 (24)
46 KOG1217 Fibrillins and related 95.7 0.025 5.3E-07 61.2 7.3 80 439-533 243-327 (487)
47 KOG1217 Fibrillins and related 95.7 0.021 4.6E-07 61.7 6.7 104 416-541 267-377 (487)
48 smart00179 EGF_CA Calcium-bind 95.6 0.014 3.1E-07 40.5 3.2 32 474-514 3-35 (39)
49 PF00008 EGF: EGF-like domain 95.4 0.016 3.4E-07 39.2 2.9 27 433-463 4-31 (32)
50 cd04821 PA_M28_1_2 PA_M28_1_2: 94.3 0.085 1.8E-06 49.4 5.7 38 93-130 47-103 (157)
51 KOG2195 Transferrin receptor a 94.2 0.3 6.5E-06 56.0 10.8 187 93-314 182-411 (702)
52 cd00054 EGF_CA Calcium-binding 93.9 0.06 1.3E-06 36.7 2.8 34 420-463 2-35 (38)
53 cd01475 vWA_Matrilin VWA_Matri 93.6 0.049 1.1E-06 53.8 2.8 34 417-461 184-217 (224)
54 cd01475 vWA_Matrilin VWA_Matri 93.1 0.061 1.3E-06 53.1 2.6 34 468-512 184-218 (224)
55 smart00181 EGF Epidermal growt 92.7 0.13 2.8E-06 34.9 3.0 25 481-513 6-31 (35)
56 cd00053 EGF Epidermal growth f 92.2 0.17 3.6E-06 33.8 3.1 27 480-513 5-32 (36)
57 cd00054 EGF_CA Calcium-binding 90.8 0.24 5.2E-06 33.6 2.7 32 474-513 3-35 (38)
58 cd00053 EGF Epidermal growth f 90.3 0.26 5.6E-06 32.9 2.5 24 436-463 9-32 (36)
59 smart00181 EGF Epidermal growt 90.3 0.27 5.9E-06 33.2 2.6 20 440-463 12-31 (35)
60 PF00008 EGF: EGF-like domain 89.3 0.14 3E-06 34.6 0.5 25 482-513 5-31 (32)
61 cd03023 DsbA_Com1_like DsbA fa 81.7 0.89 1.9E-05 41.1 2.0 81 303-394 67-147 (154)
62 PF13462 Thioredoxin_4: Thiore 80.8 3.5 7.6E-05 37.7 5.7 86 289-393 68-153 (162)
63 PF12661 hEGF: Human growth fa 80.7 0.73 1.6E-05 24.7 0.6 11 503-513 1-11 (13)
64 PF12946 EGF_MSP1_1: MSP1 EGF 73.7 3.4 7.4E-05 28.9 2.5 27 437-468 9-36 (37)
65 KOG1225 Teneurin-1 and related 68.4 14 0.0003 41.2 7.2 10 504-513 355-364 (525)
66 PF07172 GRP: Glycine rich pro 65.5 3.1 6.7E-05 35.6 1.1 21 9-29 7-27 (95)
67 KOG1225 Teneurin-1 and related 63.2 11 0.00024 42.0 5.1 58 449-533 297-354 (525)
68 PF12946 EGF_MSP1_1: MSP1 EGF 58.3 2.8 6E-05 29.4 -0.3 19 496-514 13-33 (37)
69 cd03019 DsbA_DsbA DsbA family, 57.0 9.6 0.00021 35.4 3.0 56 327-389 101-156 (178)
70 KOG0994 Extracellular matrix g 50.0 23 0.00051 42.5 5.0 76 420-513 865-945 (1758)
71 cd03022 DsbA_HCCA_Iso DsbA fam 48.7 16 0.00034 34.5 3.0 56 328-390 126-181 (192)
72 COG2234 Iap Predicted aminopep 47.3 51 0.0011 35.6 7.1 84 96-183 104-188 (435)
73 PF09064 Tme5_EGF_like: Thromb 44.7 23 0.00051 24.3 2.4 19 496-514 12-30 (34)
74 KOG4258 Insulin/growth factor 42.7 13 0.00027 43.4 1.5 89 410-514 221-318 (1025)
75 COG4882 Predicted aminopeptida 41.2 2.1E+02 0.0046 30.5 9.9 97 96-205 90-188 (486)
76 cd03024 DsbA_FrnE DsbA family, 40.7 24 0.00053 33.5 3.0 59 326-391 132-191 (201)
77 PRK10954 periplasmic protein d 40.4 24 0.00052 34.3 2.9 54 328-388 126-179 (207)
78 cd04727 pdxS PdxS is a subunit 39.8 46 0.00099 34.2 4.8 69 107-178 16-91 (283)
79 PF06247 Plasmod_Pvs28: Plasmo 39.2 15 0.00032 35.3 1.1 86 439-540 11-105 (197)
80 COG5540 RING-finger-containing 35.3 9.9 0.00022 39.0 -0.7 43 98-140 149-194 (374)
81 PF00954 S_locus_glycop: S-loc 34.5 33 0.00071 29.7 2.5 31 474-512 78-108 (110)
82 PF06247 Plasmod_Pvs28: Plasmo 33.6 28 0.00061 33.5 2.0 93 393-511 16-119 (197)
83 TIGR00343 pyridoxal 5'-phospha 31.0 38 0.00083 34.8 2.6 54 107-163 18-77 (287)
84 PF01323 DSBA: DSBA-like thior 29.5 31 0.00068 32.4 1.7 59 327-392 125-184 (193)
85 PF07974 EGF_2: EGF-like domai 28.5 40 0.00086 22.7 1.6 22 437-464 10-31 (32)
86 PF01680 SOR_SNZ: SOR/SNZ fami 27.6 22 0.00049 33.9 0.3 63 107-172 22-93 (208)
87 KOG1215 Low-density lipoprotei 24.7 66 0.0014 38.5 3.6 72 419-513 324-397 (877)
88 PHA03099 epidermal growth fact 24.7 51 0.0011 29.7 2.0 40 419-471 41-83 (139)
89 KOG0994 Extracellular matrix g 23.8 61 0.0013 39.3 2.9 6 449-454 1085-1090(1758)
90 PF13605 DUF4141: Domain of un 23.8 78 0.0017 24.3 2.5 21 12-33 6-26 (55)
91 PF00954 S_locus_glycop: S-loc 22.3 62 0.0013 27.9 2.1 31 421-462 78-108 (110)
92 COG0214 SNZ1 Pyridoxine biosyn 20.9 52 0.0011 32.8 1.4 64 106-172 27-99 (296)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.95 E-value=3.3e-27 Score=212.41 Aligned_cols=127 Identities=65% Similarity=1.100 Sum_probs=106.4
Q ss_pred cCCCCCCCCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCce
Q 008587 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL 133 (560)
Q Consensus 54 ~FG~~~~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~l 133 (560)
|||.|+||++++|.|+|++.+.+||++++......+.++..+++||||+||+|+|.+|++|||++||++|||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999988999999997642122223467789999999999999999999999999999999988777
Q ss_pred eecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 134 ITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 134 ~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
+.|..+.++. ..++..+++||++||++++|+.|++.|++|..|+|+|
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 7886544311 1134467899999999999999999999999999875
No 2
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.87 E-value=1.5e-21 Score=178.20 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=97.2
Q ss_pred eeeccCCCCCCCCceeEEEEc--cCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEe
Q 008587 50 SAIGNFGIPQYGGSMAGAVTY--PKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVAD 127 (560)
Q Consensus 50 ~~~a~FG~~~~g~~~~G~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n 127 (560)
..+|.||.+.++..+.|.|+. +.++.+||+++++.. ..+...++||||+||+|+|.+|++|||++||++|||||
T Consensus 17 ~~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~----~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn 92 (138)
T cd02122 17 TESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFP----IPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYN 92 (138)
T ss_pred ccccccCCCCCCCccEEEEecCCCCCCcCCCCCCcccc----CCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEE
Confidence 358999999999999999864 456789999987620 01345689999999999999999999999999999999
Q ss_pred cCC--CceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 128 DIE--EALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 128 ~~~--~~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
+.+ +.++.|... ....||+++|++.+|++|+++|++|.+|++++
T Consensus 93 ~~~~~~~~~~m~~~----------~~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 93 NPGTGNETVKMSHP----------GTGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCCCceeeccCC----------CCCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 986 235666422 13479999999999999999999999988864
No 3
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.87 E-value=2.9e-21 Score=179.66 Aligned_cols=121 Identities=33% Similarity=0.457 Sum_probs=101.2
Q ss_pred ceeeeeeccCCCCCCCCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEE
Q 008587 46 GSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLV 125 (560)
Q Consensus 46 ~~~~~~~a~FG~~~~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV 125 (560)
..|++..|.||.+++++.++|.|++ .+|.+||++++++. .. .+...++||||+||+|+|.+|++|||++||++|||
T Consensus 22 ~~~~~~~A~FG~~~~~~~~~g~lv~-~~p~~gC~~~~~~~--~~-~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII 97 (153)
T cd02123 22 DEFDDLPANFGPIPPGSGLKGVLVV-AEPLNACSPIENPP--LN-SNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIV 97 (153)
T ss_pred ceEeeecccCCCCCCCCceEEEEEe-CCccccCCCCcccc--cc-cccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEE
Confidence 5789999999999999999999987 46899999987632 11 13455899999999999999999999999999999
Q ss_pred EecCCCceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCe
Q 008587 126 ADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEM 176 (560)
Q Consensus 126 ~n~~~~~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~ 176 (560)
||+.++.+..|.... ....+++||+++|++++|+.|++.++.+..
T Consensus 98 ~n~~~~~~~~m~~~~------~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 98 YNDESNDLISMSGND------QEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EECCCCcceeccCCC------CCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 999877777775321 112478999999999999999999998776
No 4
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.86 E-value=4.5e-21 Score=172.75 Aligned_cols=118 Identities=26% Similarity=0.422 Sum_probs=94.7
Q ss_pred eeeccCCCCCCCC-ceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEec
Q 008587 50 SAIGNFGIPQYGG-SMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADD 128 (560)
Q Consensus 50 ~~~a~FG~~~~g~-~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~ 128 (560)
..+|.||.+.+.. .+.|.|+.+ +|.+||+++.++. . ..++|+||+||+|+|.+|+++||++||+||||||+
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~~-~p~~gC~~~~~~~-~------~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~ 73 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVKA-KPYRACSEITNAE-E------VKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDN 73 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEeC-CchhcccCCCCcc-c------cCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEEC
Confidence 3578999888753 688998874 6789999886532 2 34799999999999999999999999999999998
Q ss_pred CCCc------eeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 129 IEEA------LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 129 ~~~~------l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
.++. ++.|.... ....+++||+++|++.+|+.|++.|+++.+|++.|
T Consensus 74 ~~~~~~~~~~~~~m~~~~------~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 74 NEGSSSDTAPMFAMSGDG------DSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CCCccccccceeEeecCC------CCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 7652 34553210 11236899999999999999999999999998864
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.85 E-value=7.3e-21 Score=169.12 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=92.5
Q ss_pred cCCCCCCCCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCC--
Q 008587 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE-- 131 (560)
Q Consensus 54 ~FG~~~~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~-- 131 (560)
.||.+..+..+.|.|+. .+|.+||++..+. +..+++|+||+||+|+|.+|++|||++||+||||||+..+
T Consensus 1 ~~~~~~~~~~~~~~lv~-~~p~~gC~~~~~~-------~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 72 (118)
T cd02127 1 DFGTIFNTRYKHVPLVP-ADPLEACEELRNI-------HDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSD 72 (118)
T ss_pred CCCccccccccceEEEE-CCccccCCCCCCc-------cccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 48887777777788875 5789999987653 2345799999999999999999999999999999998754
Q ss_pred -ceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEEE
Q 008587 132 -ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLD 182 (560)
Q Consensus 132 -~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l~ 182 (560)
..+.|... +...+++||+++|++++|+.|++.++++..|++.|.
T Consensus 73 ~~~~~m~~~-------~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 73 EYYVEMIQD-------DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ccceEecCC-------CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 23456421 223578999999999999999999999998877654
No 6
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.84 E-value=2.6e-20 Score=170.67 Aligned_cols=120 Identities=29% Similarity=0.391 Sum_probs=96.6
Q ss_pred ceeeeeeccCCCCCCC---CceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcE
Q 008587 46 GSHDSAIGNFGIPQYG---GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASA 122 (560)
Q Consensus 46 ~~~~~~~a~FG~~~~g---~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~a 122 (560)
..|...+|.||..++. +.+.+.++. .++.+||+++++ .++++||||+||+|+|.+|++|||++||++
T Consensus 17 ~~~~~~~a~FG~~~p~~~~~~~~~~lv~-~~~~~gC~~~~~---------~~~g~IvLV~RG~C~F~~K~~nA~~aGA~a 86 (139)
T cd02132 17 DELVGVTARFGASLPSKEDNANKTRAVL-ANPLDCCSPSTS---------KLSGSIALVERGECAFTEKAKIAEAGGASA 86 (139)
T ss_pred cEEEeeccccCCCCCCcccCccEEEEEE-CCcccccCCCCc---------ccCCeEEEEECCCCCHHHHHHHHHHcCCcE
Confidence 5789999999975543 357788776 468899999863 234799999999999999999999999999
Q ss_pred EEEEecCCCceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 123 VLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 123 vIV~n~~~~~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
|||||+.++ +..|.... ++...++.||+++|++.+|+.|+++|++|..|++++
T Consensus 87 vIv~n~~~~-~~~~~~~~-----~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 87 LLIINDQEE-LYKMVCED-----NDTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEEECCCc-ccccccCC-----CCCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 999998754 44554221 122336899999999999999999999999988764
No 7
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.80 E-value=3.3e-19 Score=158.20 Aligned_cols=106 Identities=28% Similarity=0.326 Sum_probs=84.0
Q ss_pred eeeccCCCCCCCCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecC
Q 008587 50 SAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDI 129 (560)
Q Consensus 50 ~~~a~FG~~~~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~ 129 (560)
...|.||+ ++...+++.. ..+|.+||++++. +.++++||||+||+|+|.+|++|||++||++|||||+.
T Consensus 5 ~~~~~~~~-~~~~~~~~~~--~~~p~~gC~~~~~--------~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~ 73 (117)
T cd04813 5 GRYASFSP-ILNPHLRGSY--KVSPTDACSLQEH--------AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDE 73 (117)
T ss_pred ccccccCC-ccCccccccc--cCCCCCCCCCCCc--------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 35689995 4445577663 3588999998843 23457999999999999999999999999999999987
Q ss_pred CC-ceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhC
Q 008587 130 EE-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (560)
Q Consensus 130 ~~-~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~ 173 (560)
++ .++.|..+. ...+++||+++|++++|+.|++++.+
T Consensus 74 ~~~~~~~m~~~~-------~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 74 PGRGLITMFSNG-------DTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred CcccceecccCC-------CCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 64 355665332 23578999999999999999988864
No 8
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.76 E-value=4e-18 Score=150.97 Aligned_cols=96 Identities=22% Similarity=0.204 Sum_probs=73.8
Q ss_pred EEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCceeecCCCccccccc
Q 008587 67 AVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSA 146 (560)
Q Consensus 67 ~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~l~~m~~~~~~~~~~ 146 (560)
.|+. .+|..||++.+... ..++++|+||+||+|+|.+|++|||++||+|||||||.+.. .+.. ..
T Consensus 23 ~~~~-~~~~~gC~~~~~~~------~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~~~------~~ 87 (120)
T cd02129 23 PLRN-LTSSVLCSASDVPP------GGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PPSG------NR 87 (120)
T ss_pred eeec-CCCcCCCCccccCc------cccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CCCC------CC
Confidence 3443 47889999876542 24458999999999999999999999999999999997532 1110 11
Q ss_pred cccCccceeEEEEcHHHHHHHHHHHhCCCeE
Q 008587 147 KYIENITIPSALIDKSFGETLKKALSGGEMV 177 (560)
Q Consensus 147 ~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V 177 (560)
+...+++||++||++++|++|++.+.++-.|
T Consensus 88 ~~~~~v~IP~v~Is~~dG~~i~~~l~~~~~v 118 (120)
T cd02129 88 SEYEKIDIPVALLSYKDMLDIQQTFGDSVKV 118 (120)
T ss_pred CCCcCCcccEEEEeHHHHHHHHHHhccCcEE
Confidence 1225789999999999999999999865333
No 9
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.75 E-value=2.1e-17 Score=148.26 Aligned_cols=116 Identities=24% Similarity=0.335 Sum_probs=89.2
Q ss_pred ccCCCCCCCCceeEEEEccCCC-cCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCC
Q 008587 53 GNFGIPQYGGSMAGAVTYPKEN-RKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE 131 (560)
Q Consensus 53 a~FG~~~~g~~~~G~lv~~~~~-~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~ 131 (560)
..|+.....+.++|.|++.... .+||++.+... +.++++||||+||+|+|.+|++|||++||++|||||+.++
T Consensus 6 ~~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~------~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~ 79 (122)
T cd04816 6 LSYSPSTPPGGVTAPLVPLDPERPAGCDASDYDG------LDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDG 79 (122)
T ss_pred EeccCCCCCCCcEEEEEEcCCCCccCCCccccCC------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 4566555566799999986432 59999876543 2445899999999999999999999999999999998764
Q ss_pred ceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 132 ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 132 ~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
....+... + . ...+.||+++|++++|++|+++|+++.+|++++
T Consensus 80 ~~~~~~~~-----~-~-~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 80 GGTAGTLG-----A-P-NIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred cccccccc-----C-C-CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 32211100 0 0 135789999999999999999999998888764
No 10
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.73 E-value=3.9e-17 Score=146.45 Aligned_cols=109 Identities=25% Similarity=0.349 Sum_probs=84.2
Q ss_pred CCCCCCCCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCcee
Q 008587 55 FGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALI 134 (560)
Q Consensus 55 FG~~~~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~l~ 134 (560)
|+..++ +..+|.|++. +.+||.+.+.+. ++.++||||+||+|+|.+|++||+++||++|||||+......
T Consensus 14 ~~~~~~-~~~~g~lv~~--~~~gC~~~~~~~-------~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~ 83 (122)
T cd02130 14 FTYSPA-GEVTGPLVVV--PNLGCDAADYPA-------SVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGL 83 (122)
T ss_pred cccCCC-CCcEEEEEEe--CCCCCCcccCCc-------CCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 444344 3468999983 578999865532 345899999999999999999999999999999998732212
Q ss_pred ecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 135 TMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 135 ~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
.... +...+..||+++|++++|+.|++.+++|.+|+++|
T Consensus 84 ~~~~--------~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 84 SGTL--------GEPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred cccc--------CCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 1111 11135789999999999999999999999998874
No 11
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.70 E-value=2.3e-16 Score=140.56 Aligned_cols=113 Identities=37% Similarity=0.566 Sum_probs=91.1
Q ss_pred eccCCCCCCC---CceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEec
Q 008587 52 IGNFGIPQYG---GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADD 128 (560)
Q Consensus 52 ~a~FG~~~~g---~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~ 128 (560)
+|.||..... ..+.|.++. .++.++|++..... ...++|||++||+|+|.+|+++|+++||+++||||+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~-------~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~ 73 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNAA-------AFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANN 73 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcCC-------CCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 6899975543 457788886 57899999886522 345899999999999999999999999999999998
Q ss_pred CCC-ceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 129 IEE-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 129 ~~~-~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
.++ ..+.|..+ .....||+++|++++|+.|+++++++.+|+++|
T Consensus 74 ~~~~~~~~~~~~---------~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 74 VAGGAPITMGGD---------DPDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCCCcceeccCC---------CCCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 764 23455421 124689999999999999999999998888864
No 12
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.65 E-value=6.6e-17 Score=144.98 Aligned_cols=126 Identities=21% Similarity=0.298 Sum_probs=101.0
Q ss_pred eEEEEccCcccceeeeeecc-CCCCCCCCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHH
Q 008587 35 SLMVTSPEKIKGSHDSAIGN-FGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVW 113 (560)
Q Consensus 35 ~l~V~~P~~l~~~~~~~~a~-FG~~~~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~ 113 (560)
.|+|++|.+|+++|+..+|. ||..-. .++.+.-.++++|..||+++.+.- .. .+.|+||+||+|+|..|.+
T Consensus 34 ~F~vlsP~~l~Yty~~~pAkdfG~~F~-~r~e~~~lV~adPp~aC~elrN~~-f~------~d~vaL~eRGeCSFl~Ktl 105 (193)
T KOG3920|consen 34 LFTVLSPYTLAYTYQMKPAKDFGVHFP-DRFENLELVLADPPHACEELRNEI-FA------PDSVALMERGECSFLVKTL 105 (193)
T ss_pred EEEecCcccEEEEEEecchhhhccccc-hhhcCcceeecCChhHHHHHhhcc-cC------CCcEEEEecCCceeeehhh
Confidence 46999999999999999997 996433 356665455689999999997653 22 2589999999999999999
Q ss_pred HHHHcCCcEEEEEecCCCc-----eeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCC
Q 008587 114 NAQKAGASAVLVADDIEEA-----LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGE 175 (560)
Q Consensus 114 nAq~aGA~avIV~n~~~~~-----l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~ 175 (560)
++|+|||.|+||.|+.... .+.|- + |.+.++.+||++++-..+|-.++..|+.-.
T Consensus 106 ~~e~aGa~aiiitd~~~~~~sf~~YveMI-~------D~sq~~AniPa~fllg~~Gy~ir~sL~r~~ 165 (193)
T KOG3920|consen 106 NGEKAGATAIIITDSQNYEYSFHQYVEMI-P------DESQDRANIPAVFLLGVTGYYIRVSLKRYF 165 (193)
T ss_pred hhhhcCceEEEEecCCCCchhHHHHHHhc-C------cccccccCCceEEEeccceEEEehhHHHhC
Confidence 9999999999999986532 35664 2 234467899999999999999888887643
No 13
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.64 E-value=1.3e-15 Score=137.66 Aligned_cols=92 Identities=29% Similarity=0.363 Sum_probs=72.5
Q ss_pred CCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCceeecCCCccccccccccCc
Q 008587 72 KENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIEN 151 (560)
Q Consensus 72 ~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~l~~m~~~~~~~~~~~~~~~ 151 (560)
+.+.+||++++... ++++++||||+||+|+|.+|++|||++||++|||||+.++.. .+... ..
T Consensus 38 ~~~~~gC~~~~~~~------~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~~~----------~~ 100 (129)
T cd02124 38 SVADDACQPLPDDT------PDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQVGS----------DA 100 (129)
T ss_pred CCCcccCcCCCccc------ccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-cccCC----------CC
Confidence 35779999985432 245689999999999999999999999999999999886542 23211 12
Q ss_pred cceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 152 ITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 152 i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
..||.+++ +++|++|+++|++|..|+++|
T Consensus 101 ~~~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 101 DSIIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred cceeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 34666666 999999999999999888864
No 14
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.62 E-value=4.1e-15 Score=135.35 Aligned_cols=98 Identities=28% Similarity=0.326 Sum_probs=72.0
Q ss_pred CCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCC-----HHHHHHHHHHcCCcEEEEEecC--CCce
Q 008587 61 GGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCF-----FALKVWNAQKAGASAVLVADDI--EEAL 133 (560)
Q Consensus 61 g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~Cs-----F~~Kv~nAq~aGA~avIV~n~~--~~~l 133 (560)
-+.++|.|++. ...+|+ + .. .+..++|+||+||.|+ |.+|++|||++||+|||||||. ++.+
T Consensus 33 ~g~~tg~lv~~--g~~g~d-~--~~------~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~ 101 (139)
T cd04817 33 TGSATGSLYYC--GTSGGS-Y--IC------GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQ 101 (139)
T ss_pred CCcceEEEEEc--cCCCcc-c--cC------CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcc
Confidence 35688998874 334563 2 11 1334799999999999 9999999999999999999998 3322
Q ss_pred eecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeE
Q 008587 134 ITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMV 177 (560)
Q Consensus 134 ~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V 177 (560)
..+. .+ ...+++||+++|++++|++|+++|.++.+|
T Consensus 102 ~~~l-g~-------~~~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 102 NPFL-VD-------TNNDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred cccc-cC-------CCCCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 2221 11 012579999999999999999999765444
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.1e-15 Score=153.34 Aligned_cols=115 Identities=23% Similarity=0.323 Sum_probs=94.6
Q ss_pred eeeeeeccCCCCCCCCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEE
Q 008587 47 SHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVA 126 (560)
Q Consensus 47 ~~~~~~a~FG~~~~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~ 126 (560)
+|...+|.||+....+.+.|.++. +.|.+||+++...... .+....+++||+||+|+|.+|+++||++|++|+|||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l~~-~ep~~aC~~i~~~p~~---~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVy 110 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVLVV-AEPLNACNPITNFPEH---STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVY 110 (348)
T ss_pred cccCCccccCCccccccceeeeec-CCCccccCccccCccC---CCCCcceEEEEEccCCchHHHHhhcccccCceEEEe
Confidence 889999999998888889999875 5788999999763211 135557999999999999999999999999999999
Q ss_pred ecCCC-ceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCC
Q 008587 127 DDIEE-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGG 174 (560)
Q Consensus 127 n~~~~-~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~ 174 (560)
||... .++.|... ..++.||++||+...|+.|++.....
T Consensus 111 nn~~~~~lv~~~~~---------~~~v~i~~~~vs~~~ge~l~~~~~~~ 150 (348)
T KOG4628|consen 111 NNVGSEDLVAMASN---------PSKVDIHIVFVSVFSGELLSSYAGRT 150 (348)
T ss_pred cCCCCchheeeccC---------CccceeEEEEEeeehHHHHHHhhccc
Confidence 98764 45666321 24799999999999999999975544
No 16
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.47 E-value=5.1e-14 Score=121.32 Aligned_cols=98 Identities=30% Similarity=0.398 Sum_probs=64.3
Q ss_pred CCCceeEEEEccCC--CcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCceeecC
Q 008587 60 YGGSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMD 137 (560)
Q Consensus 60 ~g~~~~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~l~~m~ 137 (560)
+.+...|.||.+.. ....|.+.+... ...+++||||+||.|+|.+|+++||++||+||||+|..... ..+.
T Consensus 2 ~~~~~~~~lV~~~~~~~~~~~~~~~~~~------~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~-~~~~ 74 (101)
T PF02225_consen 2 PSGTVTGPLVPAGNGIDEGDCCPSDYNG------SDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNN-GSMI 74 (101)
T ss_dssp --EEEEEEEEEETTEEECCHHHHHHTST------STCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSC-TTTT
T ss_pred CCCCEEEEEEEecCCCCcccccccccCC------ccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccc-cCcc
Confidence 34567788873211 112233322222 34558999999999999999999999999999999922211 1111
Q ss_pred CCccccccccccCccceeEEEEcHHHHHHHHHHH
Q 008587 138 TPEEDISSAKYIENITIPSALIDKSFGETLKKAL 171 (560)
Q Consensus 138 ~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l 171 (560)
.......+.||+++|++++|++|++++
T Consensus 75 -------~~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 75 -------DSEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp -------CEBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred -------cccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 112234689999999999999999875
No 17
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.44 E-value=6.2e-13 Score=119.07 Aligned_cols=99 Identities=32% Similarity=0.375 Sum_probs=74.9
Q ss_pred CCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCceeecCCCccccccccccCcc
Q 008587 73 ENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENI 152 (560)
Q Consensus 73 ~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~l~~m~~~~~~~~~~~~~~~i 152 (560)
.+..+|.+... ++.. ....++|||++||.|+|.+|+++|+++||+++||+|+.+.....|.... ......
T Consensus 28 ~~~~~C~~~~~---~~~~-~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~------~~~~~~ 97 (126)
T cd00538 28 GPLVGCGYGTT---DDSG-ADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVG------LESTDP 97 (126)
T ss_pred cceEEEecCcc---cccC-CCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCccccccccc------CCCCCC
Confidence 46678887652 1111 3455899999999999999999999999999999998864333332111 001356
Q ss_pred ceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 153 TIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 153 ~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
.||+++|++++|++|+++++++.+|++++
T Consensus 98 ~iP~~~is~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 98 SIPTVGISYADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred cEeEEEeCHHHHHHHHHHHhcCCceEEeC
Confidence 89999999999999999999988887753
No 18
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.38 E-value=7.2e-12 Score=115.48 Aligned_cols=100 Identities=26% Similarity=0.261 Sum_probs=74.9
Q ss_pred ccCCCCCCCCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCc
Q 008587 53 GNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA 132 (560)
Q Consensus 53 a~FG~~~~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~ 132 (560)
..|+.|...+...+.|+|.. . |.+-+... ..++++|||++||+|+|.+|+++|+++||++|||+|+..+.
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g---~-g~~~d~~~------~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~ 84 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAG---L-GTPEDFEG------KDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL 84 (143)
T ss_pred ccCCCcCCCCCcEEEEEEcc---C-CchhccCC------CCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc
Confidence 45666666667888998852 2 22222221 24558999999999999999999999999999999987543
Q ss_pred eeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhC
Q 008587 133 LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (560)
Q Consensus 133 l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~ 173 (560)
..|.. . ....||+++|++++|+.|++++++
T Consensus 85 -~~~~~--------~--~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 85 -IPGTL--------G--EAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred -ccccC--------C--CCCeEeEEEecHHHHHHHHHHHhC
Confidence 22210 0 135799999999999999999987
No 19
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.35 E-value=2.9e-12 Score=134.00 Aligned_cols=121 Identities=26% Similarity=0.351 Sum_probs=89.6
Q ss_pred eeeeeccCCCCCCCCceeEEEE-c-cCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEE
Q 008587 48 HDSAIGNFGIPQYGGSMAGAVT-Y-PKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLV 125 (560)
Q Consensus 48 ~~~~~a~FG~~~~g~~~~G~lv-~-~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV 125 (560)
+....+.||..+....-...+. + -.+|.|-|.+... .+++++++|.||+|+|.+|+++||++||+|++|
T Consensus 55 ~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~---------kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLli 125 (541)
T KOG2442|consen 55 FAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQS---------KLSGKVALVFRGNCSFTEKAKLAQAAGASALLI 125 (541)
T ss_pred hhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCc---------cccceeEEEecccceeehhhhhhhhcCceEEEE
Confidence 4467788886332211111111 1 1468888887653 234799999999999999999999999999999
Q ss_pred EecCCCceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEEEe
Q 008587 126 ADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDW 183 (560)
Q Consensus 126 ~n~~~~~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l~~ 183 (560)
.||..+. .-|...+ .....+++||++||++++|+.|.+....+.+|++.|+.
T Consensus 126 in~~~d~-~~~~~~~-----~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYa 177 (541)
T KOG2442|consen 126 INNKKDL-LFMPCGN-----KETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYA 177 (541)
T ss_pred EcCchhh-ccCCCCC-----CCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEEC
Confidence 9997654 3443222 12335899999999999999999999999999999998
No 20
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.34 E-value=1.4e-11 Score=111.20 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=76.1
Q ss_pred CceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCC--CHHHHHHHHHHcCCcEEEEEecCCCceeecCCC
Q 008587 62 GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDC--FFALKVWNAQKAGASAVLVADDIEEALITMDTP 139 (560)
Q Consensus 62 ~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~C--sF~~Kv~nAq~aGA~avIV~n~~~~~l~~m~~~ 139 (560)
+.++|.+++.. .| .+.+ |.+ .+..++||||+||.| +|..|+++|+++||+||||+|+.++.+..+.
T Consensus 21 ~~~~~~lV~~g---~G-~~~d-----~~~-~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~-- 88 (127)
T cd04819 21 GEAKGEPVDAG---YG-LPKD-----FDG-LDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATG-- 88 (127)
T ss_pred CCeeEEEEEeC---CC-CHHH-----cCC-CCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccc--
Confidence 45789999853 22 2222 221 235589999999999 9999999999999999999988766432221
Q ss_pred ccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEE
Q 008587 140 EEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVN 180 (560)
Q Consensus 140 ~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~ 180 (560)
.. .+.......||++.|+.+||++|+++++.|.+|.+.
T Consensus 89 ~~---~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 89 DE---GTEDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred cc---cccCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 10 111123468999999999999999999998877664
No 21
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.27 E-value=9.2e-12 Score=136.11 Aligned_cols=115 Identities=24% Similarity=0.527 Sum_probs=94.9
Q ss_pred CCCCCCcccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceeecCCccceeeeC----CCCccCCCCCCCCCCcCC
Q 008587 415 SGDVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSG----PGKCKINNGGCWHESKDG 490 (560)
Q Consensus 415 ~~c~didEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~gdg~~~C~di~----~~eC~~~~~~C~~~~~~~ 490 (560)
+.|.|++||+..++.| ++++.|+|.+++|+|+|.. |..|.+|+.+ |..+. ++.|....+.|....+
T Consensus 729 r~c~d~~eca~~~~~C-----Gp~s~Cin~pg~~rceC~~--gy~F~dd~~t-CV~i~~pap~n~Ce~g~h~C~i~g~-- 798 (1289)
T KOG1214|consen 729 RNCVDENECATGFHRC-----GPNSVCINLPGSYRCECRS--GYEFADDRHT-CVLITPPAPANPCEDGSHTCAIAGQ-- 798 (1289)
T ss_pred CCCCChhhhccCCCCC-----CCCceeecCCCceeEEEee--cceeccCCcc-eEEecCCCCCCccccCccccCcCCc--
Confidence 4688999999999988 5679999999999999999 6677788888 98662 4678777677865422
Q ss_pred CcccccccC--CCceeeCCCCcccCCCcccccCCCCCCCCCCCCCCccCCCCCcc
Q 008587 491 HTYSACLDS--ENGKCQCPPGFKGDGVKSCILMNAKRGKPVSALSVAAKTPGEAM 543 (560)
Q Consensus 491 ~~~~~C~n~--gs~~C~C~~Gf~~dg~~sC~didEC~~~~~C~~~~~~~~~g~~~ 543 (560)
..|+.. ++|.|.|.|||.||| ..|.|+|||..+...+...|+|+||+|-
T Consensus 799 ---a~c~~hGgs~y~C~CLPGfsGDG-~~c~dvDeC~psrChp~A~Cyntpgsfs 849 (1289)
T KOG1214|consen 799 ---ARCVHHGGSTYSCACLPGFSGDG-HQCTDVDECSPSRCHPAATCYNTPGSFS 849 (1289)
T ss_pred ---eEEEecCCceEEEeecCCccCCc-cccccccccCccccCCCceEecCCCcce
Confidence 137776 779999999999999 4699999999887668899999999874
No 22
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.18 E-value=7.5e-11 Score=107.49 Aligned_cols=104 Identities=20% Similarity=0.160 Sum_probs=76.6
Q ss_pred CCCceeEEEEccCCCcCCCCCCCCCCcccccCCCCCCcEEEEecCCC------CHHHH-------HHHHHHcCCcEEEEE
Q 008587 60 YGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDC------FFALK-------VWNAQKAGASAVLVA 126 (560)
Q Consensus 60 ~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~C------sF~~K-------v~nAq~aGA~avIV~ 126 (560)
.++.++|.|++..+ .+ .+. ++. ...+.||||||+||.| +|..| +.+|+++||.|+||+
T Consensus 13 ~~~gvta~vv~v~~--~~--~~~----~~~-~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~ 83 (134)
T cd04815 13 PPEGITAEVVVVKS--FD--ELK----AAP-AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIR 83 (134)
T ss_pred CCCCcEEEEEEECC--HH--HHH----hcc-hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEE
Confidence 34558999988542 12 222 221 1355689999999999 99999 799999999999999
Q ss_pred ecCCCce--e---ecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCCCeEEEEE
Q 008587 127 DDIEEAL--I---TMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (560)
Q Consensus 127 n~~~~~l--~---~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v~l 181 (560)
|+.+... . +|..+ .....||++.|+.+||+.|.++|+++++|+++|
T Consensus 84 s~~~~~~~~~~~G~~~~~---------~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 84 SIGTDSHRSPHTGMMSYD---------DGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred ecCcccCCCCcCCccccC---------CCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 9754321 1 22111 124579999999999999999999999888874
No 23
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.04 E-value=1.2e-09 Score=98.24 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=66.8
Q ss_pred CcCCCCCCCCCCcccccCCCCCCcEEEEecCCC-CHHHHHHHHHHcCCcEEEEEecCCCceeecCCCccccccccccCcc
Q 008587 74 NRKGCREFGDFGISFKAKPGALPNFVLVDRGDC-FFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENI 152 (560)
Q Consensus 74 ~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~C-sF~~Kv~nAq~aGA~avIV~n~~~~~l~~m~~~~~~~~~~~~~~~i 152 (560)
...+|++...... ...++|||.+||.| +|.+|+.+|+++||+++|++++..+.. .+. ....
T Consensus 36 ~~~~C~~~~~~~~------~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~-----------~~~~ 97 (126)
T cd02120 36 DASLCLPGSLDPS------KVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVV-----------ADAH 97 (126)
T ss_pred ccccCCCCCCChh------hccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eec-----------cccc
Confidence 4478987654322 33479999999999 999999999999999999999875532 221 0135
Q ss_pred ceeEEEEcHHHHHHHHHHHhCCCe
Q 008587 153 TIPSALIDKSFGETLKKALSGGEM 176 (560)
Q Consensus 153 ~IPsv~Is~~~G~~L~~~l~~~~~ 176 (560)
.||+++|++++|+.|+++++++..
T Consensus 98 ~iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 98 VLPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred ccceEEECHHHHHHHHHHHHcCCC
Confidence 799999999999999999997644
No 24
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.88 E-value=1e-08 Score=97.47 Aligned_cols=115 Identities=24% Similarity=0.265 Sum_probs=72.6
Q ss_pred cCCCCCCCCceeEEEEccCCCcCCCCCCCCCCccccc-CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCc
Q 008587 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKA-KPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA 132 (560)
Q Consensus 54 ~FG~~~~g~~~~G~lv~~~~~~~gC~~~~~~~~~~~~-~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~ 132 (560)
.|-.-...+.++|.|||. ..| .+.++. .+.. .-...++||||+||.|+|.+|+++||++||+|||||++..+.
T Consensus 19 ~f~~~s~~G~v~g~lVyv---n~G-~~~Df~--~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~ 92 (183)
T cd02128 19 GYVAYSAAGTVTGKLVYA---NYG-RKKDFE--DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADF 92 (183)
T ss_pred cccCCCCCCceEEEEEEc---CCC-CHHHHH--HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHc
Confidence 344333345789999985 233 322221 0110 124558999999999999999999999999999999884210
Q ss_pred -------------------eeecCCCccccc---cccccCccceeEEEEcHHHHHHHHHHHhCC
Q 008587 133 -------------------LITMDTPEEDIS---SAKYIENITIPSALIDKSFGETLKKALSGG 174 (560)
Q Consensus 133 -------------------l~~m~~~~~~~~---~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~ 174 (560)
..+.+.|..... ..+...-..||++-||..+++.|++.|.-.
T Consensus 93 ~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 93 PIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred CcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 112222111000 000001247999999999999999999643
No 25
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.52 E-value=1.7e-07 Score=103.51 Aligned_cols=82 Identities=29% Similarity=0.711 Sum_probs=69.0
Q ss_pred CCcccCCCCCCcCCCCCCCcccceecCC-ceEEEccCCCCceeecCCccceeeeCCCCccCCCCCCCCCCcCCCcccccc
Q 008587 419 ETNECLDNNGGCWQDKTANVTACKDTFR-GRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACL 497 (560)
Q Consensus 419 didEC~~~~~~C~~~~~~~~~~C~nt~g-sy~C~C~~~~g~g~~gdg~~~C~di~~~eC~~~~~~C~~~~~~~~~~~~C~ 497 (560)
-++.|..+.+.|.- .....|+.+.+ .|.|+|.+ ||.|||.. |.++ |||. ++.|++.+. |+
T Consensus 782 p~n~Ce~g~h~C~i---~g~a~c~~hGgs~y~C~CLP----GfsGDG~~-c~dv--DeC~--psrChp~A~-------Cy 842 (1289)
T KOG1214|consen 782 PANPCEDGSHTCAI---AGQARCVHHGGSTYSCACLP----GFSGDGHQ-CTDV--DECS--PSRCHPAAT-------CY 842 (1289)
T ss_pred CCCccccCccccCc---CCceEEEecCCceEEEeecC----CccCCccc-cccc--cccC--ccccCCCce-------Ee
Confidence 56889888888853 13456776654 89999999 99999988 9999 9998 778999986 99
Q ss_pred cC-CCceeeCCCCcccCCCccccc
Q 008587 498 DS-ENGKCQCPPGFKGDGVKSCIL 520 (560)
Q Consensus 498 n~-gs~~C~C~~Gf~~dg~~sC~d 520 (560)
|+ +++.|+|.+||.|||+ .|..
T Consensus 843 ntpgsfsC~C~pGy~GDGf-~CVP 865 (1289)
T KOG1214|consen 843 NTPGSFSCRCQPGYYGDGF-QCVP 865 (1289)
T ss_pred cCCCcceeecccCccCCCc-eecC
Confidence 99 9999999999999996 4863
No 26
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.43 E-value=1.1e-06 Score=86.28 Aligned_cols=123 Identities=27% Similarity=0.280 Sum_probs=78.0
Q ss_pred CceeEEEEccCCCcCCCCCCCCCCcccc-cCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCc--------
Q 008587 62 GSMAGAVTYPKENRKGCREFGDFGISFK-AKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA-------- 132 (560)
Q Consensus 62 ~~~~G~lv~~~~~~~gC~~~~~~~~~~~-~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~-------- 132 (560)
+.++|.|||.. .|...++. .+. ..-+..++||||++|.+.+..|+++|+++||+|||||++..+.
T Consensus 43 g~v~g~lVyvn----yG~~~D~~--~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~ 116 (220)
T cd02121 43 GNVTAELVYAN----YGSPEDFE--YLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENG 116 (220)
T ss_pred CCceEEEEEcC----CCcHHHHH--HHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhccccccccc
Confidence 45899999963 34332221 111 0124558999999999999999999999999999999874211
Q ss_pred ------------ee----ec---CCCcccc------ccc--------cccCccceeEEEEcHHHHHHHHHHHhCCCeEEE
Q 008587 133 ------------LI----TM---DTPEEDI------SSA--------KYIENITIPSALIDKSFGETLKKALSGGEMVNV 179 (560)
Q Consensus 133 ------------l~----~m---~~~~~~~------~~~--------~~~~~i~IPsv~Is~~~G~~L~~~l~~~~~V~v 179 (560)
-+ .+ ..+. |+ +.. ....-..||++=||..+++.|++.|.... +
T Consensus 117 ~~yP~g~~~~~~~vqRgsv~~~~~~~G-DplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~---~ 192 (220)
T cd02121 117 KTYPDGPARPPSGVQRGSVLFMSIGPG-DPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG---A 192 (220)
T ss_pred ccCCCCCCCCCCcceecceeccccCCC-CCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC---C
Confidence 00 00 0010 00 000 00012379999999999999999998543 4
Q ss_pred EEEecccccCCCCceeEEEE
Q 008587 180 NLDWREAVPHPDDRVEYELW 199 (560)
Q Consensus 180 ~l~~~~~~p~~~~~v~~~~w 199 (560)
--+|+-.+ .++|.+|
T Consensus 193 p~~W~g~l-----~~~y~~g 207 (220)
T cd02121 193 PSDWQGGL-----PVTYRLG 207 (220)
T ss_pred CccccCCC-----CCceeeC
Confidence 45664433 3677776
No 27
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.40 E-value=3.4e-07 Score=109.05 Aligned_cols=96 Identities=22% Similarity=0.515 Sum_probs=75.3
Q ss_pred CCcCCCCCCCcccceecC-CceEEEccCCCCceeecCCcccee-eeCCCCccCCCCCCCCCCcCCCcccccccC-CCcee
Q 008587 428 GGCWQDKTANVTACKDTF-RGRVCECPLVDGVQFKGDGYSHCE-VSGPGKCKINNGGCWHESKDGHTYSACLDS-ENGKC 504 (560)
Q Consensus 428 ~~C~~~~~~~~~~C~nt~-gsy~C~C~~~~g~g~~gdg~~~C~-di~~~eC~~~~~~C~~~~~~~~~~~~C~n~-gs~~C 504 (560)
..|..++|.+.+.|..++ |+|+|.||+ .|.|.. |+ ++ ..|.. .+|-.+.. |... +.|.|
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCps----qysG~~---CEi~~--epC~s--nPC~~Ggt-------Cip~~n~f~C 3926 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPS----QYSGNH---CEIDL--EPCAS--NPCLTGGT-------CIPFYNGFLC 3926 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcc----cccCcc---ccccc--ccccC--CCCCCCCE-------EEecCCCeeE
Confidence 345555667788998886 599999999 999864 87 45 88884 46765543 9988 99999
Q ss_pred eCCCCcccCCCcccc-c-CCCCCCCCCCCCCCccCCCCCccc
Q 008587 505 QCPPGFKGDGVKSCI-L-MNAKRGKPVSALSVAAKTPGEAMN 544 (560)
Q Consensus 505 ~C~~Gf~~dg~~sC~-d-idEC~~~~~C~~~~~~~~~g~~~~ 544 (560)
.||.||+|+- |+ + |+||..+.+-..++|.|.||+|.=
T Consensus 3927 nC~~gyTG~~---Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~C 3965 (4289)
T KOG1219|consen 3927 NCPNGYTGKR---CEARGISECSKNVCGTGGQCINIPGSFHC 3965 (4289)
T ss_pred eCCCCccCce---eecccccccccccccCCceeeccCCceEe
Confidence 9999999873 86 3 999998865588899999998753
No 28
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.31 E-value=5.4e-06 Score=76.84 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=64.6
Q ss_pred CceeEEEEccCC--CcCCCCCCCCCCcccccCCCCCCcEEEEecCC------------------CCHHHHHHHHHHcCCc
Q 008587 62 GSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGD------------------CFFALKVWNAQKAGAS 121 (560)
Q Consensus 62 ~~~~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~------------------CsF~~Kv~nAq~aGA~ 121 (560)
+.++|.|||... ...+|...++...+ ..+|||||.||. |+|..|+++|+++||+
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~giD------VkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYAGLD------VKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred CCceEeEEEecCCcCccccchhhccCCC------CCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 568999998642 24566655443333 447999999985 9999999999999999
Q ss_pred EEEEEecCCCceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHh
Q 008587 122 AVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALS 172 (560)
Q Consensus 122 avIV~n~~~~~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~ 172 (560)
|||||++..+..-.-..+. .. ... .++.|+....+.|..++.
T Consensus 92 aVIv~~d~~~~~~~~~~~~----~~----~~~-~~~~~~~~~~~~~~~~~~ 133 (151)
T cd04822 92 AVIVVNGPNSHSGDADRLP----RF----GGT-APQRVDIAAADPWFTAAE 133 (151)
T ss_pred EEEEEeCCcccCccccccc----cc----Ccc-ceEEechHHHHHHhhhhh
Confidence 9999998654310000000 00 111 178888888888887643
No 29
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.21 E-value=4.2e-06 Score=76.72 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=53.3
Q ss_pred eeeccCCCCCCCCceeEEEEccCC--CcCCCCCCCCCCcccccCCCCCCcEEEEecCCC------------------CHH
Q 008587 50 SAIGNFGIPQYGGSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGDC------------------FFA 109 (560)
Q Consensus 50 ~~~a~FG~~~~g~~~~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~C------------------sF~ 109 (560)
..+.+|+.+ +.+.+.||+... ...+|.--++... +..||||||.||.| +|.
T Consensus 9 ~~~~~~~~~---~~~~aelVfvGyGi~a~~~~~dDYag~------DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~ 79 (142)
T cd04814 9 AAMLNVDAV---AIKDAPLVFVGYGIKAPELSWDDYAGL------DVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWT 79 (142)
T ss_pred ccccCCCCc---cccceeeEEecCCcCCCCCChhhcCCC------CCCCcEEEEEcCCCCcccccccccccccccccCHH
Confidence 455666643 457788888632 2345654444333 44579999999999 799
Q ss_pred HHHHHHHHcCCcEEEEEecCC
Q 008587 110 LKVWNAQKAGASAVLVADDIE 130 (560)
Q Consensus 110 ~Kv~nAq~aGA~avIV~n~~~ 130 (560)
.|+.+|+++||+||||+++.+
T Consensus 80 ~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 80 YKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred HHHHHHHHCCCcEEEEEeCCC
Confidence 999999999999999999865
No 30
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.11 E-value=6.6e-06 Score=75.45 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=65.7
Q ss_pred CCceeEEEEccCCCcCCCC-CCCCCCcccccCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCc-------
Q 008587 61 GGSMAGAVTYPKENRKGCR-EFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA------- 132 (560)
Q Consensus 61 g~~~~G~lv~~~~~~~gC~-~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~------- 132 (560)
.++++|.+||.. .|=. +|. .+...-+++++|||++.|.-++..||+|||++||++||||.|..+.
T Consensus 12 sG~Vtg~~VYvN---yG~~eDf~----~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~ 84 (153)
T cd02131 12 KGTLQAEVVDVQ---YGSVEDLR----RIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTW 84 (153)
T ss_pred CCceEEEEEEec---CCCHHHHH----HHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCc
Confidence 357899999852 1110 110 0110123458999999999999999999999999999999875221
Q ss_pred --ee--ec---CCCcccc---c--cc---cccCccceeEEEEcHHHHHHHHHHHhC
Q 008587 133 --LI--TM---DTPEEDI---S--SA---KYIENITIPSALIDKSFGETLKKALSG 173 (560)
Q Consensus 133 --l~--~m---~~~~~~~---~--~~---~~~~~i~IPsv~Is~~~G~~L~~~l~~ 173 (560)
.. .+ ++|.. + + +. ....-.+||+.=|+..|+..|+++-.+
T Consensus 85 ~~v~~v~~~~~GDP~T-PG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~~ 139 (153)
T cd02131 85 HQAFMVSLNPGGDPST-PGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPPS 139 (153)
T ss_pred cceEEEecCCCCCCCC-CCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCcc
Confidence 00 11 11110 0 0 00 001124799999999999998876543
No 31
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.08 E-value=1.3e-05 Score=73.02 Aligned_cols=63 Identities=17% Similarity=0.081 Sum_probs=48.4
Q ss_pred CceeEEEEccC--CCcCCCCCCCCCCcccccCCCCCCcEEEEecCCCC------------HHHHHHHHHHcCCcEEEEEe
Q 008587 62 GSMAGAVTYPK--ENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCF------------FALKVWNAQKAGASAVLVAD 127 (560)
Q Consensus 62 ~~~~G~lv~~~--~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~Cs------------F~~Kv~nAq~aGA~avIV~n 127 (560)
+.++|.|||.. ....+|..-++..+ +..||||||.||.|. +..|+++|+++||+|||||+
T Consensus 20 g~v~gelVfvGyG~~~~~~~~~Dy~~i------DVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 20 ASVEAPLVFVGYGLVAPELGHDDYAGL------DVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCceEeEEEecCCcCccCcCHhhccCC------CCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 46889999863 23355654444333 344799999999994 88999999999999999999
Q ss_pred cCC
Q 008587 128 DIE 130 (560)
Q Consensus 128 ~~~ 130 (560)
+..
T Consensus 94 d~~ 96 (137)
T cd04820 94 TPR 96 (137)
T ss_pred CCc
Confidence 854
No 32
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.94 E-value=9e-06 Score=58.73 Aligned_cols=34 Identities=24% Similarity=0.639 Sum_probs=30.5
Q ss_pred CCcccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceee
Q 008587 419 ETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFK 461 (560)
Q Consensus 419 didEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~ 461 (560)
|||||..+.+.|. ..+.|+|+.|+|.|.|++ ||.
T Consensus 1 DidEC~~~~~~C~-----~~~~C~N~~Gsy~C~C~~----Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCP-----ENGTCVNTEGSYSCSCPP----GYE 34 (42)
T ss_dssp ESSTTTTTSSSSS-----TTSEEEEETTEEEEEEST----TEE
T ss_pred CccccCCCCCcCC-----CCCEEEcCCCCEEeeCCC----CcE
Confidence 6899999888894 469999999999999999 777
No 33
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.74 E-value=1.9e-05 Score=49.68 Aligned_cols=22 Identities=41% Similarity=1.100 Sum_probs=19.4
Q ss_pred CceeeCCCCcc--cCCCcccccCCC
Q 008587 501 NGKCQCPPGFK--GDGVKSCILMNA 523 (560)
Q Consensus 501 s~~C~C~~Gf~--~dg~~sC~didE 523 (560)
||.|.|++||+ .+| ++|+||||
T Consensus 1 sy~C~C~~Gy~l~~d~-~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDG-RSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCC-CccccCCC
Confidence 68999999998 567 67999998
No 34
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=97.73 E-value=4.3e-05 Score=91.99 Aligned_cols=78 Identities=26% Similarity=0.672 Sum_probs=66.2
Q ss_pred cccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceeecCCccceeeeCCCCccCCCCCCCCCCcCCCcccccccC-
Q 008587 421 NECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDS- 499 (560)
Q Consensus 421 dEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~gdg~~~C~di~~~eC~~~~~~C~~~~~~~~~~~~C~n~- 499 (560)
+.|..+-..|..+||.+...|.-..++|.|.||. ||+|+. |+.-|.+||+ ...|.+.+. |.|.
T Consensus 3897 ~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~----gyTG~~---Ce~~Gi~eCs--~n~C~~gg~-------C~n~~ 3960 (4289)
T KOG1219|consen 3897 NHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPN----GYTGKR---CEARGISECS--KNVCGTGGQ-------CINIP 3960 (4289)
T ss_pred cccccccccccCCCCCCCCEEEecCCCeeEeCCC----CccCce---eecccccccc--cccccCCce-------eeccC
Confidence 5566666668888889999999999999999999 999875 9865569998 447988765 9999
Q ss_pred CCceeeCCCCcccCC
Q 008587 500 ENGKCQCPPGFKGDG 514 (560)
Q Consensus 500 gs~~C~C~~Gf~~dg 514 (560)
|+|.|.|.+||+|.+
T Consensus 3961 gsf~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3961 GSFHCNCTPGILGRT 3975 (4289)
T ss_pred CceEeccChhHhccc
Confidence 999999999999875
No 35
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=97.50 E-value=0.00013 Score=85.13 Aligned_cols=86 Identities=30% Similarity=0.737 Sum_probs=63.2
Q ss_pred cceeeeccc-CcccCCCCccccCCCCCCcccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceeecCCcccee-ee
Q 008587 394 GAVLKAICS-GFEETTEPAVCLSGDVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCE-VS 471 (560)
Q Consensus 394 ~~v~~~iC~-g~~~~~~p~~C~~~c~didEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~gdg~~~C~-di 471 (560)
-.-++|-|+ ||... .| ..++|+| .+++|+|+++|+...|+|.|+|.+ ||.|.. |+ +.
T Consensus 1219 vnglrCrCPpGFTgd----~C---eTeiDlC-------Ys~pC~nng~C~srEggYtCeCrp----g~tGeh---CEvs~ 1277 (2531)
T KOG4289|consen 1219 VNGLRCRCPPGFTGD----YC---ETEIDLC-------YSGPCGNNGRCRSREGGYTCECRP----GFTGEH---CEVSA 1277 (2531)
T ss_pred cCceeEeCCCCCCcc----cc---cchhHhh-------hcCCCCCCCceEEecCceeEEecC----Cccccc---eeeec
Confidence 345677885 66632 34 2466666 445567899999999999999999 999865 87 33
Q ss_pred CCCCccCCCCCCCCCCcCCCcccccccC--CCceeeCCCC
Q 008587 472 GPGKCKINNGGCWHESKDGHTYSACLDS--ENGKCQCPPG 509 (560)
Q Consensus 472 ~~~eC~~~~~~C~~~~~~~~~~~~C~n~--gs~~C~C~~G 509 (560)
...+|. +|.|.+... |+|. +.+.|.||.|
T Consensus 1278 ~agrCv--pGvC~nggt-------C~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1278 RAGRCV--PGVCKNGGT-------CVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred ccCccc--cceecCCCE-------EeecCCCceeccCCCc
Confidence 345666 667776543 9998 8999999999
No 36
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.44 E-value=0.00011 Score=51.15 Aligned_cols=36 Identities=42% Similarity=1.050 Sum_probs=28.6
Q ss_pred cCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceeecCCccce
Q 008587 423 CLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHC 468 (560)
Q Consensus 423 C~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~gdg~~~C 468 (560)
|..++++|+ .++.|.++.++|.|.|++ ||.|||.. |
T Consensus 1 C~~~~~~C~-----~nA~C~~~~~~~~C~C~~----Gy~GdG~~-C 36 (36)
T PF12947_consen 1 CLENNGGCH-----PNATCTNTGGSYTCTCKP----GYEGDGFF-C 36 (36)
T ss_dssp TTTGGGGS------TTCEEEE-TTSEEEEE-C----EEECCSTC-E
T ss_pred CCCCCCCCC-----CCcEeecCCCCEEeECCC----CCccCCcC-C
Confidence 566788886 469999999999999999 99999976 5
No 37
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.43 E-value=3.8e-05 Score=53.52 Aligned_cols=33 Identities=42% Similarity=1.112 Sum_probs=26.3
Q ss_pred ccCCCCCCCCCCcCCCcccccccC-CCceeeCCCCcccCCC
Q 008587 476 CKINNGGCWHESKDGHTYSACLDS-ENGKCQCPPGFKGDGV 515 (560)
Q Consensus 476 C~~~~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~~dg~ 515 (560)
|..++++|+.++. |.++ ++|.|.|++||.|||.
T Consensus 1 C~~~~~~C~~nA~-------C~~~~~~~~C~C~~Gy~GdG~ 34 (36)
T PF12947_consen 1 CLENNGGCHPNAT-------CTNTGGSYTCTCKPGYEGDGF 34 (36)
T ss_dssp TTTGGGGS-TTCE-------EEE-TTSEEEEE-CEEECCST
T ss_pred CCCCCCCCCCCcE-------eecCCCCEEeECCCCCccCCc
Confidence 4566789999886 9999 9999999999999994
No 38
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.36 E-value=9.5e-05 Score=53.36 Aligned_cols=33 Identities=24% Similarity=0.771 Sum_probs=28.9
Q ss_pred eeCCCCccCCCCCCCCCCcCCCcccccccC-CCceeeCCCCcc
Q 008587 470 VSGPGKCKINNGGCWHESKDGHTYSACLDS-ENGKCQCPPGFK 511 (560)
Q Consensus 470 di~~~eC~~~~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~ 511 (560)
|| |||....+.|..... |+|+ |+|.|.|++||+
T Consensus 1 Di--dEC~~~~~~C~~~~~-------C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DI--DECAEGPHNCPENGT-------CVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp ES--STTTTTSSSSSTTSE-------EEEETTEEEEEESTTEE
T ss_pred Cc--cccCCCCCcCCCCCE-------EEcCCCCEEeeCCCCcE
Confidence 56 999998889975544 9999 999999999998
No 39
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.23 E-value=0.00025 Score=49.37 Aligned_cols=33 Identities=42% Similarity=0.898 Sum_probs=26.3
Q ss_pred cCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceee--cCCcc
Q 008587 423 CLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFK--GDGYS 466 (560)
Q Consensus 423 C~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~--gdg~~ 466 (560)
|..++++| .+.|++++++|+|.|++ ||. .|+++
T Consensus 1 C~~~NGgC-------~h~C~~~~g~~~C~C~~----Gy~L~~D~~t 35 (36)
T PF14670_consen 1 CSVNNGGC-------SHICVNTPGSYRCSCPP----GYKLAEDGRT 35 (36)
T ss_dssp CTTGGGGS-------SSEEEEETTSEEEE-ST----TEEE-TTSSS
T ss_pred CCCCCCCc-------CCCCccCCCceEeECCC----CCEECcCCCC
Confidence 56778999 58999999999999999 665 56654
No 40
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00031 Score=69.44 Aligned_cols=73 Identities=25% Similarity=0.538 Sum_probs=53.3
Q ss_pred CCCCCCcccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceeecCCccceeeeCCCCccCCCCCCCCCCcCCCccc
Q 008587 415 SGDVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYS 494 (560)
Q Consensus 415 ~~c~didEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~gdg~~~C~di~~~eC~~~~~~C~~~~~~~~~~~ 494 (560)
..|+|+|||......|. ..+.|+|+.|||.|.+.+ ||.+ + + |+|..-...|...-.
T Consensus 231 ~gCvDvnEC~~ep~~c~-----~~qfCvNteGSf~C~dk~----Gy~~-g------~--d~C~~~~d~~~~kn~------ 286 (350)
T KOG4260|consen 231 EGCVDVNECQNEPAPCK-----AHQFCVNTEGSFKCEDKE----GYKK-G------V--DECQFCADVCASKNR------ 286 (350)
T ss_pred cccccHHHHhcCCCCCC-----hhheeecCCCceEecccc----cccC-C------h--HHhhhhhhhcccCCC------
Confidence 46899999988777774 579999999999999988 7765 2 1 444431223332211
Q ss_pred ccccC-CCceeeCCCCcc
Q 008587 495 ACLDS-ENGKCQCPPGFK 511 (560)
Q Consensus 495 ~C~n~-gs~~C~C~~Gf~ 511 (560)
.|.|+ ++|+|.|+.|+.
T Consensus 287 ~c~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 287 PCMNIDGQYRCVCFSGLI 304 (350)
T ss_pred CcccCCccEEEEecccce
Confidence 28899 999999999986
No 41
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=96.91 E-value=0.00029 Score=49.09 Aligned_cols=33 Identities=52% Similarity=1.435 Sum_probs=25.3
Q ss_pred ccCCCCCCCCCCcCCCcccccccC-CCceeeCCCCcc--cCCCccc
Q 008587 476 CKINNGGCWHESKDGHTYSACLDS-ENGKCQCPPGFK--GDGVKSC 518 (560)
Q Consensus 476 C~~~~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~--~dg~~sC 518 (560)
|..++++|.+. |+++ ++|.|.|++||. .|+ ++|
T Consensus 1 C~~~NGgC~h~---------C~~~~g~~~C~C~~Gy~L~~D~-~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHI---------CVNTPGSYRCSCPPGYKLAEDG-RTC 36 (36)
T ss_dssp CTTGGGGSSSE---------EEEETTSEEEE-STTEEE-TTS-SSE
T ss_pred CCCCCCCcCCC---------CccCCCceEeECCCCCEECcCC-CCC
Confidence 45568889876 9999 999999999998 344 444
No 42
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=96.67 E-value=0.0014 Score=76.96 Aligned_cols=55 Identities=35% Similarity=0.842 Sum_probs=46.4
Q ss_pred eecCCceEEEccCCCCceeecCCcccee-eeCCCCccCCCCCCCCCCcCCCcccccccC-CCceeeCCCCcccCC
Q 008587 442 KDTFRGRVCECPLVDGVQFKGDGYSHCE-VSGPGKCKINNGGCWHESKDGHTYSACLDS-ENGKCQCPPGFKGDG 514 (560)
Q Consensus 442 ~nt~gsy~C~C~~~~g~g~~gdg~~~C~-di~~~eC~~~~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~~dg 514 (560)
.++.++++|.||+ ||+||. |+ .+ |+|- .++|..+.+ |... |.|+|.|.+||+|.-
T Consensus 1216 i~pvnglrCrCPp----GFTgd~---CeTei--DlCY--s~pC~nng~-------C~srEggYtCeCrpg~tGeh 1272 (2531)
T KOG4289|consen 1216 IHPVNGLRCRCPP----GFTGDY---CETEI--DLCY--SGPCGNNGR-------CRSREGGYTCECRPGFTGEH 1272 (2531)
T ss_pred ccccCceeEeCCC----CCCccc---ccchh--Hhhh--cCCCCCCCc-------eEEecCceeEEecCCccccc
Confidence 5678899999999 999985 76 56 8897 467988754 9999 999999999999763
No 43
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.14 E-value=0.0051 Score=42.77 Aligned_cols=33 Identities=30% Similarity=0.737 Sum_probs=25.7
Q ss_pred CCcccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceee
Q 008587 419 ETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFK 461 (560)
Q Consensus 419 didEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~ 461 (560)
++|||... ..|. +.+.|+++.++|.|.|++ ||.
T Consensus 1 d~~~C~~~-~~C~-----~~~~C~~~~g~~~C~C~~----g~~ 33 (39)
T smart00179 1 DIDECASG-NPCQ-----NGGTCVNTVGSYRCECPP----GYT 33 (39)
T ss_pred CcccCcCC-CCcC-----CCCEeECCCCCeEeECCC----CCc
Confidence 46788653 4563 456899999999999999 887
No 44
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.0039 Score=61.94 Aligned_cols=75 Identities=20% Similarity=0.391 Sum_probs=54.5
Q ss_pred ceEE-EccCCCCceeecCCccceeeeCCCCccCCCCCCCCCCcCCCcccccccC-CCceeeCCCCcccCCCcccccCCCC
Q 008587 447 GRVC-ECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDS-ENGKCQCPPGFKGDGVKSCILMNAK 524 (560)
Q Consensus 447 sy~C-~C~~~~g~g~~gdg~~~C~di~~~eC~~~~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~~dg~~sC~didEC 524 (560)
+..| +|.. ||.-+... |.|| |||...+..|.... .|+|+ |||.|.+.+||.+ | +|||
T Consensus 216 ~k~C~kCkk----GW~lde~g-CvDv--nEC~~ep~~c~~~q-------fCvNteGSf~C~dk~Gy~~-g------~d~C 274 (350)
T KOG4260|consen 216 SKGCSKCKK----GWKLDEEG-CVDV--NECQNEPAPCKAHQ-------FCVNTEGSFKCEDKEGYKK-G------VDEC 274 (350)
T ss_pred CCChhhhcc----cceecccc-cccH--HHHhcCCCCCChhh-------eeecCCCceEecccccccC-C------hHHh
Confidence 4445 6777 88877545 9999 99998888887663 49999 9999999999986 3 3555
Q ss_pred CC--C-CCCCCCCccCCCCCc
Q 008587 525 RG--K-PVSALSVAAKTPGEA 542 (560)
Q Consensus 525 ~~--~-~~C~~~~~~~~~g~~ 542 (560)
.- . ..-.+..|.|++|+.
T Consensus 275 ~~~~d~~~~kn~~c~ni~~~~ 295 (350)
T KOG4260|consen 275 QFCADVCASKNRPCMNIDGQY 295 (350)
T ss_pred hhhhhhcccCCCCcccCCccE
Confidence 43 1 122556677777764
No 45
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=95.72 E-value=0.0065 Score=38.31 Aligned_cols=22 Identities=36% Similarity=0.825 Sum_probs=18.1
Q ss_pred ceEEEccCCCCceee--cCCccceeeeCCCC
Q 008587 447 GRVCECPLVDGVQFK--GDGYSHCEVSGPGK 475 (560)
Q Consensus 447 sy~C~C~~~~g~g~~--gdg~~~C~di~~~e 475 (560)
||.|.|++ ||. .++++ |+|| ||
T Consensus 1 sy~C~C~~----Gy~l~~d~~~-C~DI--dE 24 (24)
T PF12662_consen 1 SYTCSCPP----GYQLSPDGRS-CEDI--DE 24 (24)
T ss_pred CEEeeCCC----CCcCCCCCCc-cccC--CC
Confidence 69999999 666 67766 9999 65
No 46
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=95.68 E-value=0.025 Score=61.22 Aligned_cols=80 Identities=25% Similarity=0.640 Sum_probs=61.4
Q ss_pred ccceecCCceEEEccCCCCceeecCC-ccceeeeCCCCccCCCCCCCCCCcCCCcccccccC-CCceeeCCCCcccCCCc
Q 008587 439 TACKDTFRGRVCECPLVDGVQFKGDG-YSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDS-ENGKCQCPPGFKGDGVK 516 (560)
Q Consensus 439 ~~C~nt~gsy~C~C~~~~g~g~~gdg-~~~C~di~~~eC~~~~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~~dg~~ 516 (560)
..|.++.++|.|.|++ ||.++. .. |.++ ++|..... |.+... |.+. ++|.|.|++||.+..-.
T Consensus 243 ~~c~~~~~~~~C~~~~----g~~~~~~~~-~~~~--~~C~~~~~-c~~~~~-------C~~~~~~~~C~C~~g~~g~~~~ 307 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPE----GYTGDACVT-CVDV--DSCALIAS-CPNGGT-------CVNVPGSYRCTCPPGFTGRLCT 307 (487)
T ss_pred CcccccCCceeeeCCC----Cccccccce-eeec--cccCCCCc-cCCCCe-------eecCCCcceeeCCCCCCCCCCc
Confidence 6889999999999999 888876 44 8888 99987654 776544 9999 77999999999977532
Q ss_pred ccccCCCCCC---CCCCCCC
Q 008587 517 SCILMNAKRG---KPVSALS 533 (560)
Q Consensus 517 sC~didEC~~---~~~C~~~ 533 (560)
.|.+.++|.. ...|..+
T Consensus 308 ~~~~~~~C~~~~~~~~c~~g 327 (487)
T KOG1217|consen 308 ECVDVDECSPRNAGGPCANG 327 (487)
T ss_pred cccccccccccccCCcCCCC
Confidence 3667778852 2335554
No 47
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=95.67 E-value=0.021 Score=61.70 Aligned_cols=104 Identities=27% Similarity=0.559 Sum_probs=72.0
Q ss_pred CCCCCcccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceeecCCccceeeeCCCCccC--CCCCCCCCCcCCCcc
Q 008587 416 GDVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKI--NNGGCWHESKDGHTY 493 (560)
Q Consensus 416 ~c~didEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~gdg~~~C~di~~~eC~~--~~~~C~~~~~~~~~~ 493 (560)
.+.++++|..... |. +...|++..+.|.|.|++ ||.+.....|.+. .+|.. ....|+....
T Consensus 267 ~~~~~~~C~~~~~-c~-----~~~~C~~~~~~~~C~C~~----g~~g~~~~~~~~~--~~C~~~~~~~~c~~g~~----- 329 (487)
T KOG1217|consen 267 TCVDVDSCALIAS-CP-----NGGTCVNVPGSYRCTCPP----GFTGRLCTECVDV--DECSPRNAGGPCANGGT----- 329 (487)
T ss_pred eeeeccccCCCCc-cC-----CCCeeecCCCcceeeCCC----CCCCCCCcccccc--ccccccccCCcCCCCcc-----
Confidence 4668999987765 74 468999999999999999 8887663225555 77753 2344665533
Q ss_pred ccc--ccC-CCceeeCCCCcccCCCcccccC-CCCCCCCCCCCCCccC-CCCC
Q 008587 494 SAC--LDS-ENGKCQCPPGFKGDGVKSCILM-NAKRGKPVSALSVAAK-TPGE 541 (560)
Q Consensus 494 ~~C--~n~-gs~~C~C~~Gf~~dg~~sC~di-dEC~~~~~C~~~~~~~-~~g~ 541 (560)
| .+. +.+.|.|+.||.|. .|++. ++|..........+.+ ++++
T Consensus 330 --C~~~~~~~~~~C~c~~~~~g~---~C~~~~~~C~~~~~~~~~~c~~~~~~~ 377 (487)
T KOG1217|consen 330 --CNTLGSFGGFRCACGPGFTGR---RCEDSNDECASSPCCPGGTCVNETPGS 377 (487)
T ss_pred --cccCCCCCCCCcCCCCCCCCC---ccccCCccccCCccccCCEeccCCCCC
Confidence 6 333 67889999996554 39888 4998875455555665 4444
No 48
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.56 E-value=0.014 Score=40.45 Aligned_cols=32 Identities=31% Similarity=1.023 Sum_probs=25.2
Q ss_pred CCccCCCCCCCCCCcCCCcccccccC-CCceeeCCCCcccCC
Q 008587 474 GKCKINNGGCWHESKDGHTYSACLDS-ENGKCQCPPGFKGDG 514 (560)
Q Consensus 474 ~eC~~~~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~~dg 514 (560)
++|... ..|.+.+. |.++ ++|.|.|++||. +|
T Consensus 3 ~~C~~~-~~C~~~~~-------C~~~~g~~~C~C~~g~~-~g 35 (39)
T smart00179 3 DECASG-NPCQNGGT-------CVNTVGSYRCECPPGYT-DG 35 (39)
T ss_pred ccCcCC-CCcCCCCE-------eECCCCCeEeECCCCCc-cC
Confidence 778753 56876543 9999 999999999999 44
No 49
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=95.43 E-value=0.016 Score=39.22 Aligned_cols=27 Identities=33% Similarity=0.703 Sum_probs=23.0
Q ss_pred CCCCCcccceecC-CceEEEccCCCCceeecC
Q 008587 433 DKTANVTACKDTF-RGRVCECPLVDGVQFKGD 463 (560)
Q Consensus 433 ~~~~~~~~C~nt~-gsy~C~C~~~~g~g~~gd 463 (560)
+++.|.+.|++.. ++|.|.|++ ||.|+
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~----G~~G~ 31 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPP----GYTGK 31 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBT----TEEST
T ss_pred CcCCCCeEEEeCCCCCEEeECCC----CCccC
Confidence 3556789999999 999999999 89875
No 50
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.34 E-value=0.085 Score=49.38 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=30.4
Q ss_pred CCCCcEEEEecCCCCH-------------------HHHHHHHHHcCCcEEEEEecCC
Q 008587 93 GALPNFVLVDRGDCFF-------------------ALKVWNAQKAGASAVLVADDIE 130 (560)
Q Consensus 93 ~~~~~IvLV~RG~CsF-------------------~~Kv~nAq~aGA~avIV~n~~~ 130 (560)
+.+||||||.+|+=.| ..|...|+++||+|||++++..
T Consensus 47 DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 47 DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 4557999998876533 3499999999999999997653
No 51
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=94.17 E-value=0.3 Score=56.04 Aligned_cols=187 Identities=21% Similarity=0.167 Sum_probs=107.9
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCC----c---------------ee----e-----cCCCcccc-
Q 008587 93 GALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE----A---------------LI----T-----MDTPEEDI- 143 (560)
Q Consensus 93 ~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~----~---------------l~----~-----m~~~~~~~- 143 (560)
+.+++|+|++-|.=++..|+.||+++||.+||||.+..+ . ++ . .+.|....
T Consensus 182 ~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~d~~~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~ 261 (702)
T KOG2195|consen 182 NLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPYDYGSDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGY 261 (702)
T ss_pred cccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccccccccccccccCcccccCCccceecceecccCCCCCCCCCCc
Confidence 355899999999999999999999999999999986431 0 00 0 01110000
Q ss_pred -c-------c--ccccCcc-ceeEEEEcHHHHHHHHHHHhCCCeEEEEEEecccccCCCCceeEEEEeecCccccchhhh
Q 008587 144 -S-------S--AKYIENI-TIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDM 212 (560)
Q Consensus 144 -~-------~--~~~~~~i-~IPsv~Is~~~G~~L~~~l~~~~~V~v~l~~~~~~p~~~~~v~~~~w~~s~~~~g~~c~~ 212 (560)
+ . ......+ .||+.=|+..+.+.|...+..+.... + ...+.|+++..+...+.
T Consensus 262 pa~~~~~~~~~~~~~~~~~P~Ip~~Pis~~~ae~l~~~~~g~~~~~----~-------~~~~~~~~gpg~~~~~~----- 325 (702)
T KOG2195|consen 262 PAVDIYSRHSPDAKFSGGLPKIPSLPISAEDAEILLRLLGGGVKPD----G-------LLGVSYRVGPGSTGDKD----- 325 (702)
T ss_pred cCccccccCChhhhhcCCCCCCCCcCccchhHHHHHHHhCCCcccc----c-------ccCcccccccccccccc-----
Confidence 0 0 0111123 89999999977777777766543322 2 34567777755555311
Q ss_pred hHHHHHHhhhHHHHHhcCCceeEEeEEEEeccCcccccccccccccccCCccCCCCCCCCCCCCCCchhhHHHHHHHhhh
Q 008587 213 LMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCV 292 (560)
Q Consensus 213 ~~~f~~~f~~~~~~l~~~~~~~f~phy~~~~c~~~~~~~~~~~~~Ci~~GrYC~~dpd~~~~~~~~G~dvv~E~lRqlCi 292 (560)
+ .+.. +...+++.+.+..+-+... ..++=|--|.+-++=-.+ -.+..+|+-+++|+.|++-.
T Consensus 326 ---~---------~~~~-~~~~~~ki~NIig~I~Gs~----epD~~ViigahrDSw~~G-a~dp~sGta~Ll~i~~~~~~ 387 (702)
T KOG2195|consen 326 ---L---------VVVQ-NTREETKIQNIIGKIEGSE----EPDRYVIIGAHRDSWTFG-AIDPNSGTALLLEIARALSK 387 (702)
T ss_pred ---c---------eecc-ceeeeeeeeeEEEEEecCc----CCCeEEEEeccccccccC-CcCCCccHHHHHHHHHHHHH
Confidence 0 1111 3456667776665433211 122223333333322222 11345899999999999998
Q ss_pred hhhcccC---CCCceeeehHHHhcc
Q 008587 293 FKVAKES---KKPWVWWDYVTDFQI 314 (560)
Q Consensus 293 ~~~~~~~---~~~~~ww~Y~~~f~~ 314 (560)
++...-. ...+.||+ ..+|+-
T Consensus 388 ~~k~gwrP~RtI~F~sWd-AeEfGl 411 (702)
T KOG2195|consen 388 LKKRGWRPRRTILFASWD-AEEFGL 411 (702)
T ss_pred HHHcCCCccceEEEEEcc-chhccc
Confidence 8776531 24567998 445543
No 52
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=93.85 E-value=0.06 Score=36.70 Aligned_cols=34 Identities=29% Similarity=0.742 Sum_probs=25.5
Q ss_pred CcccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceeecC
Q 008587 420 TNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGD 463 (560)
Q Consensus 420 idEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~gd 463 (560)
+++|... ..| .+.+.|.++.++|.|.|++ +|.+.
T Consensus 2 ~~~C~~~-~~C-----~~~~~C~~~~~~~~C~C~~----g~~g~ 35 (38)
T cd00054 2 IDECASG-NPC-----QNGGTCVNTVGSYRCSCPP----GYTGR 35 (38)
T ss_pred cccCCCC-CCc-----CCCCEeECCCCCeEeECCC----CCcCC
Confidence 5677543 345 3457899999999999999 88763
No 53
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=93.58 E-value=0.049 Score=53.79 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=29.4
Q ss_pred CCCCcccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceee
Q 008587 417 DVETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFK 461 (560)
Q Consensus 417 c~didEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~ 461 (560)
|.+.+||...++.|+ +.|.|+.|+|.|.|++ ||.
T Consensus 184 C~~~~~C~~~~~~c~-------~~C~~~~g~~~c~c~~----g~~ 217 (224)
T cd01475 184 CVVPDLCATLSHVCQ-------QVCISTPGSYLCACTE----GYA 217 (224)
T ss_pred CcCchhhcCCCCCcc-------ceEEcCCCCEEeECCC----Ccc
Confidence 457889988888894 7899999999999999 775
No 54
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=93.11 E-value=0.061 Score=53.11 Aligned_cols=34 Identities=24% Similarity=0.616 Sum_probs=29.7
Q ss_pred eeeeCCCCccCCCCCCCCCCcCCCcccccccC-CCceeeCCCCccc
Q 008587 468 CEVSGPGKCKINNGGCWHESKDGHTYSACLDS-ENGKCQCPPGFKG 512 (560)
Q Consensus 468 C~di~~~eC~~~~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~~ 512 (560)
|.++ ++|...++.|++. |.++ |+|.|.|++||..
T Consensus 184 C~~~--~~C~~~~~~c~~~---------C~~~~g~~~c~c~~g~~~ 218 (224)
T cd01475 184 CVVP--DLCATLSHVCQQV---------CISTPGSYLCACTEGYAL 218 (224)
T ss_pred CcCc--hhhcCCCCCccce---------EEcCCCCEEeECCCCccC
Confidence 8877 8998777889865 9999 9999999999974
No 55
>smart00181 EGF Epidermal growth factor-like domain.
Probab=92.71 E-value=0.13 Score=34.85 Aligned_cols=25 Identities=40% Similarity=1.190 Sum_probs=20.6
Q ss_pred CCCCCCCcCCCcccccccC-CCceeeCCCCcccC
Q 008587 481 GGCWHESKDGHTYSACLDS-ENGKCQCPPGFKGD 513 (560)
Q Consensus 481 ~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~~d 513 (560)
..|.++ . |.++ ++|.|.|++||+++
T Consensus 6 ~~C~~~-~-------C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNG-T-------CINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCC-E-------EECCCCCeEeECCCCCccC
Confidence 467664 3 9999 99999999999985
No 56
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=92.24 E-value=0.17 Score=33.80 Aligned_cols=27 Identities=33% Similarity=1.041 Sum_probs=21.2
Q ss_pred CCCCCCCCcCCCcccccccC-CCceeeCCCCcccC
Q 008587 480 NGGCWHESKDGHTYSACLDS-ENGKCQCPPGFKGD 513 (560)
Q Consensus 480 ~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~~d 513 (560)
...|.+.+. |.++ +.|.|.|+.||.+.
T Consensus 5 ~~~C~~~~~-------C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGT-------CVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCE-------EecCCCCeEeECCCCCccc
Confidence 345665443 9998 89999999999877
No 57
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=90.81 E-value=0.24 Score=33.59 Aligned_cols=32 Identities=28% Similarity=0.956 Sum_probs=24.0
Q ss_pred CCccCCCCCCCCCCcCCCcccccccC-CCceeeCCCCcccC
Q 008587 474 GKCKINNGGCWHESKDGHTYSACLDS-ENGKCQCPPGFKGD 513 (560)
Q Consensus 474 ~eC~~~~~~C~~~~~~~~~~~~C~n~-gs~~C~C~~Gf~~d 513 (560)
++|... ..|..... |.+. +.|.|.|++||.|.
T Consensus 3 ~~C~~~-~~C~~~~~-------C~~~~~~~~C~C~~g~~g~ 35 (38)
T cd00054 3 DECASG-NPCQNGGT-------CVNTVGSYRCSCPPGYTGR 35 (38)
T ss_pred ccCCCC-CCcCCCCE-------eECCCCCeEeECCCCCcCC
Confidence 677642 46764433 9999 99999999999874
No 58
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=90.28 E-value=0.26 Score=32.86 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=20.4
Q ss_pred CCcccceecCCceEEEccCCCCceeecC
Q 008587 436 ANVTACKDTFRGRVCECPLVDGVQFKGD 463 (560)
Q Consensus 436 ~~~~~C~nt~gsy~C~C~~~~g~g~~gd 463 (560)
.+++.|+++.++|.|.|+. ||.+.
T Consensus 9 ~~~~~C~~~~~~~~C~C~~----g~~g~ 32 (36)
T cd00053 9 SNGGTCVNTPGSYRCVCPP----GYTGD 32 (36)
T ss_pred CCCCEEecCCCCeEeECCC----CCccc
Confidence 3458899999999999999 88776
No 59
>smart00181 EGF Epidermal growth factor-like domain.
Probab=90.27 E-value=0.27 Score=33.20 Aligned_cols=20 Identities=35% Similarity=0.874 Sum_probs=18.0
Q ss_pred cceecCCceEEEccCCCCceeecC
Q 008587 440 ACKDTFRGRVCECPLVDGVQFKGD 463 (560)
Q Consensus 440 ~C~nt~gsy~C~C~~~~g~g~~gd 463 (560)
.|+++.++|.|.|++ ||.+.
T Consensus 12 ~C~~~~~~~~C~C~~----g~~g~ 31 (35)
T smart00181 12 TCINTPGSYTCSCPP----GYTGD 31 (35)
T ss_pred EEECCCCCeEeECCC----CCccC
Confidence 899999999999999 88774
No 60
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=89.34 E-value=0.14 Score=34.56 Aligned_cols=25 Identities=36% Similarity=1.059 Sum_probs=19.9
Q ss_pred CCCCCCcCCCcccccccC--CCceeeCCCCcccC
Q 008587 482 GCWHESKDGHTYSACLDS--ENGKCQCPPGFKGD 513 (560)
Q Consensus 482 ~C~~~~~~~~~~~~C~n~--gs~~C~C~~Gf~~d 513 (560)
+|.+.+. |++. +.|.|.|++||.|+
T Consensus 5 ~C~n~g~-------C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 5 PCQNGGT-------CIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp SSTTTEE-------EEEESTSEEEEEEBTTEEST
T ss_pred cCCCCeE-------EEeCCCCCEEeECCCCCccC
Confidence 5666544 8777 78999999999875
No 61
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=81.71 E-value=0.89 Score=41.06 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=50.5
Q ss_pred ceeeehHHHhccccCCCccccHHHhHHHHHHHcCCCHHHHccccCCCCCCCCchhhHHHHHHHcCCCCccceEecceeEE
Q 008587 303 WVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIEKCMGDPDADADNPVLKEEQDAQVGKGSRGDVTILPTLVV 382 (560)
Q Consensus 303 ~~ww~Y~~~f~~~C~~~~~~y~~~Cs~~v~~~~gi~~~~I~~C~~ds~~~~~N~iLe~e~~~q~~~~~~~~v~~~P~l~I 382 (560)
.++|+|....-.. . ......=...+++.+|++.+++++|+.+.. ....|+++.+.- .+.+|.-.|+++|
T Consensus 67 ~~~~~~~~~lf~~---~-~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~gi~gtPt~~v 135 (154)
T cd03023 67 GKYLEFHNALMAT---R-GRLNEESLLRIAKKAGLDEAKLKKDMDDPE---IEATIDKNRQLA----RALGITGTPAFII 135 (154)
T ss_pred hHHHHHHHHHHhc---C-CCCCHHHHHHHHHHcCCCHHHHHHHhhChH---HHHHHHHHHHHH----HHcCCCcCCeEEE
Confidence 3688887665321 1 111111134567788999999999998643 223454444332 2234888999999
Q ss_pred cCeeeccccccc
Q 008587 383 NNRQYRGKLEKG 394 (560)
Q Consensus 383 N~~~~rG~l~~~ 394 (560)
||..+.|..+..
T Consensus 136 ~g~~~~G~~~~~ 147 (154)
T cd03023 136 GDTVIPGAVPAD 147 (154)
T ss_pred CCEEecCCCCHH
Confidence 999888876543
No 62
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=80.76 E-value=3.5 Score=37.69 Aligned_cols=86 Identities=14% Similarity=0.251 Sum_probs=47.7
Q ss_pred HhhhhhhcccCCCCceeeehHHHhccccCCCccccHHHhHHHHHHHcCCCHHHHccccCCCCCCCCchhhHHHHHHHcCC
Q 008587 289 QLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIEKCMGDPDADADNPVLKEEQDAQVGK 368 (560)
Q Consensus 289 qlCi~~~~~~~~~~~~ww~Y~~~f~~~C~~~~~~y~~~Cs~~v~~~~gi~~~~I~~C~~ds~~~~~N~iLe~e~~~q~~~ 368 (560)
-.|+++.. + .||.+...+...-.. .. .. ..+.+..+.+.+++++|+.+... ...|++..+.-
T Consensus 68 ~~~~~~~~-~-----~~~~~~~~~~~~~~~---~~-~~--~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--- 129 (162)
T PF13462_consen 68 AECVADQG-K-----YFWFFHELLFSQQEN---FE-NK--KDIAANAGGSNEQFNKCLNSDEI---KAQLEADSQLA--- 129 (162)
T ss_dssp HHHHHHHT-H-----HHHHHHHHHHHHCHS---TS-SH--HHHHHHTTSHHHHHHHHHTSHHH---HHHHHHHHHHH---
T ss_pred HHHHHHHh-H-----HHHHHHHHHHHhhhc---cc-hh--HHHHHHcCCCHHHHHHHhhchHH---HHHHHHHHHHH---
Confidence 44555553 2 577776654443221 11 11 33444556667889999986532 12333332221
Q ss_pred CCccceEecceeEEcCeeecccccc
Q 008587 369 GSRGDVTILPTLVVNNRQYRGKLEK 393 (560)
Q Consensus 369 ~~~~~v~~~P~l~IN~~~~rG~l~~ 393 (560)
.+..|...|+++|||..+.|..+.
T Consensus 130 -~~~~i~~tPt~~inG~~~~~~~~~ 153 (162)
T PF13462_consen 130 -RQLGITGTPTFFINGKYVVGPYTI 153 (162)
T ss_dssp -HHHT-SSSSEEEETTCEEETTTSH
T ss_pred -HHcCCccccEEEECCEEeCCCCCH
Confidence 234478899999999998766543
No 63
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=80.73 E-value=0.73 Score=24.72 Aligned_cols=11 Identities=64% Similarity=1.730 Sum_probs=8.7
Q ss_pred eeeCCCCcccC
Q 008587 503 KCQCPPGFKGD 513 (560)
Q Consensus 503 ~C~C~~Gf~~d 513 (560)
.|.|++||+|.
T Consensus 1 ~C~C~~G~~G~ 11 (13)
T PF12661_consen 1 TCQCPPGWTGP 11 (13)
T ss_dssp EEEE-TTEETT
T ss_pred CccCcCCCcCC
Confidence 48999999986
No 64
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=73.74 E-value=3.4 Score=28.91 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=21.1
Q ss_pred CcccceecC-CceEEEccCCCCceeecCCccce
Q 008587 437 NVTACKDTF-RGRVCECPLVDGVQFKGDGYSHC 468 (560)
Q Consensus 437 ~~~~C~nt~-gsy~C~C~~~~g~g~~gdg~~~C 468 (560)
.++.|.+.. |++.|.|.. ||..++.+ |
T Consensus 9 ~NA~C~~~~dG~eecrCll----gyk~~~~~-C 36 (37)
T PF12946_consen 9 ANAGCFRYDDGSEECRCLL----GYKKVGGK-C 36 (37)
T ss_dssp TTEEEEEETTSEEEEEE-T----TEEEETTE-E
T ss_pred CCcccEEcCCCCEEEEeeC----CccccCCC-c
Confidence 358888887 999999999 89877655 5
No 65
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=68.42 E-value=14 Score=41.21 Aligned_cols=10 Identities=40% Similarity=1.401 Sum_probs=6.1
Q ss_pred eeCCCCcccC
Q 008587 504 CQCPPGFKGD 513 (560)
Q Consensus 504 C~C~~Gf~~d 513 (560)
|.|..||+|.
T Consensus 355 C~C~~Gw~G~ 364 (525)
T KOG1225|consen 355 CKCKKGWRGP 364 (525)
T ss_pred ceeccCccCC
Confidence 6666666643
No 66
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.50 E-value=3.1 Score=35.63 Aligned_cols=21 Identities=29% Similarity=0.051 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhccCccceE
Q 008587 9 LKLFLGFLILSLNVHTSVSRF 29 (560)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (560)
|+|+|+|+++||.++-++|+=
T Consensus 7 llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred HHHHHHHHHHHHHHhhhhhHH
Confidence 556666667777676666654
No 67
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=63.21 E-value=11 Score=41.99 Aligned_cols=58 Identities=29% Similarity=0.793 Sum_probs=39.3
Q ss_pred EEEccCCCCceeecCCccceeeeCCCCccCCCCCCCCCCcCCCcccccccCCCceeeCCCCcccCCCcccccCCCCCCCC
Q 008587 449 VCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACLDSENGKCQCPPGFKGDGVKSCILMNAKRGKP 528 (560)
Q Consensus 449 ~C~C~~~~g~g~~gdg~~~C~di~~~eC~~~~~~C~~~~~~~~~~~~C~n~gs~~C~C~~Gf~~dg~~sC~didEC~~~~ 528 (560)
.|.|++ +|.|.. |+. .+|. ..|..+.+ |++ -.|.|.+||+|+- |.-.+ |....
T Consensus 297 ~CiC~~----g~~G~d---Cs~---~~cp---adC~g~G~-------Ci~---G~C~C~~Gy~G~~---C~~~~-C~~~g 349 (525)
T KOG1225|consen 297 ECICNP----GYSGKD---CSI---RRCP---ADCSGHGK-------CID---GECLCDEGYTGEL---CIQRA-CSGGG 349 (525)
T ss_pred EeecCC----Cccccc---ccc---ccCC---ccCCCCCc-------ccC---CceEeCCCCcCCc---ccccc-cCCCc
Confidence 899999 998764 654 3343 45665543 763 4799999999874 65545 76665
Q ss_pred CCCCC
Q 008587 529 VSALS 533 (560)
Q Consensus 529 ~C~~~ 533 (560)
.|.++
T Consensus 350 ~cv~g 354 (525)
T KOG1225|consen 350 QCVNG 354 (525)
T ss_pred eeccC
Confidence 66666
No 68
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=58.27 E-value=2.8 Score=29.35 Aligned_cols=19 Identities=32% Similarity=0.863 Sum_probs=15.9
Q ss_pred cccC--CCceeeCCCCcccCC
Q 008587 496 CLDS--ENGKCQCPPGFKGDG 514 (560)
Q Consensus 496 C~n~--gs~~C~C~~Gf~~dg 514 (560)
|.+. |++.|+|..||+.+|
T Consensus 13 C~~~~dG~eecrCllgyk~~~ 33 (37)
T PF12946_consen 13 CFRYDDGSEECRCLLGYKKVG 33 (37)
T ss_dssp EEEETTSEEEEEE-TTEEEET
T ss_pred cEEcCCCCEEEEeeCCccccC
Confidence 8777 999999999999776
No 69
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=57.03 E-value=9.6 Score=35.39 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=38.6
Q ss_pred hHHHHHHHcCCCHHHHccccCCCCCCCCchhhHHHHHHHcCCCCccceEecceeEEcCeeecc
Q 008587 327 CAAAVIKSLGLDAKKIEKCMGDPDADADNPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRG 389 (560)
Q Consensus 327 Cs~~v~~~~gi~~~~I~~C~~ds~~~~~N~iLe~e~~~q~~~~~~~~v~~~P~l~IN~~~~rG 389 (560)
=-.++.+++|++.+++++|+.+.. .+..+++....- .+.+|.-.|+++|||..+.+
T Consensus 101 ~l~~~a~~~Gl~~~~~~~~~~s~~---~~~~i~~~~~~~----~~~gi~gTPt~iInG~~~~~ 156 (178)
T cd03019 101 DIRKIFLSQGVDKKKFDAAYNSFS---VKALVAKAEKLA----KKYKITGVPAFVVNGKYVVN 156 (178)
T ss_pred HHHHHHHHhCCCHHHHHHHHhCHH---HHHHHHHHHHHH----HHcCCCCCCeEEECCEEEEC
Confidence 356677888999999999998653 223444443322 22348899999999986543
No 70
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.97 E-value=23 Score=42.48 Aligned_cols=76 Identities=24% Similarity=0.578 Sum_probs=44.1
Q ss_pred CcccCCCCCCcCCCCCCCcccceecCCceEE-EccCCCCceeecCCccceeeeCCCCccCCCCCCCCCCcCCCcc-cccc
Q 008587 420 TNECLDNNGGCWQDKTANVTACKDTFRGRVC-ECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTY-SACL 497 (560)
Q Consensus 420 idEC~~~~~~C~~~~~~~~~~C~nt~gsy~C-~C~~~~g~g~~gdg~~~C~di~~~eC~~~~~~C~~~~~~~~~~-~~C~ 497 (560)
-|+|-...|.| -.|.+...++.| .|.. ||.||-+. =.. ..|. +=+|......|..| ..|.
T Consensus 865 A~~Cd~~tGaC--------i~CqD~T~G~~CdrCl~----GyyGdP~l-g~g---~~Cr--PCpCP~gp~Sg~~~A~sC~ 926 (1758)
T KOG0994|consen 865 ADTCDPITGAC--------IDCQDSTTGHSCDRCLD----GYYGDPRL-GSG---IGCR--PCPCPDGPASGRQHADSCY 926 (1758)
T ss_pred ccccCcccccc--------ccccccccccchhhhhc----cccCCccc-CCC---CCCC--CCCCCCCCccchhcccccc
Confidence 46777777777 568888889999 7988 88876533 001 1222 11232222222222 1243
Q ss_pred cC---CCceeeCCCCcccC
Q 008587 498 DS---ENGKCQCPPGFKGD 513 (560)
Q Consensus 498 n~---gs~~C~C~~Gf~~d 513 (560)
-. ....|.|.+||.|.
T Consensus 927 ~d~~t~~ivC~C~~GY~G~ 945 (1758)
T KOG0994|consen 927 LDTRTQQIVCHCQEGYSGS 945 (1758)
T ss_pred ccccccceeeecccCcccc
Confidence 22 45679999999865
No 71
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=48.67 E-value=16 Score=34.46 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCHHHHccccCCCCCCCCchhhHHHHHHHcCCCCccceEecceeEEcCeeeccc
Q 008587 328 AAAVIKSLGLDAKKIEKCMGDPDADADNPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGK 390 (560)
Q Consensus 328 s~~v~~~~gi~~~~I~~C~~ds~~~~~N~iLe~e~~~q~~~~~~~~v~~~P~l~IN~~~~rG~ 390 (560)
-..+.+.+|+|.+++.+++.+... ...|+++.+.- .+.+|.-.|+++|||..+.|.
T Consensus 126 l~~~a~~~Gld~~~~~~~~~~~~~---~~~l~~~~~~a----~~~gi~gvPtfvv~g~~~~G~ 181 (192)
T cd03022 126 LAAVAAAAGLDADELLAAADDPAV---KAALRANTEEA----IARGVFGVPTFVVDGEMFWGQ 181 (192)
T ss_pred HHHHHHHcCCCHHHHHHHcCCHHH---HHHHHHHHHHH----HHcCCCcCCeEEECCeeeccc
Confidence 345677889999999999986532 22333333221 123488999999999888776
No 72
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=47.30 E-value=51 Score=35.62 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=58.5
Q ss_pred CcEEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCcee-ecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhCC
Q 008587 96 PNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALI-TMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGG 174 (560)
Q Consensus 96 ~~IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~l~-~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~~ 174 (560)
..+.++.|+...+..+..++...|+.+.+.++....... .+.... .........+|++.+.+..+..+......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (435)
T COG2234 104 LPAAFISRGNADLVETAPNAVEAGAAAFILYASVAAENFPKLGLIG----TGRALYLAEIPAVGVSKLVGNRLIFYKQAG 179 (435)
T ss_pred cccccccccccchhhcccchhhcccchheeeccccccccccccccc----ccccccccccccccccccchhHHhhhhhcC
Confidence 356778888899999999999999999999987654221 111100 011112468999999999999998888877
Q ss_pred CeEEEEEEe
Q 008587 175 EMVNVNLDW 183 (560)
Q Consensus 175 ~~V~v~l~~ 183 (560)
....+....
T Consensus 180 ~~~~~~~~~ 188 (435)
T COG2234 180 GGLTSKNVA 188 (435)
T ss_pred cceEEEEEe
Confidence 555554444
No 73
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=44.72 E-value=23 Score=24.29 Aligned_cols=19 Identities=37% Similarity=0.906 Sum_probs=13.5
Q ss_pred cccCCCceeeCCCCcccCC
Q 008587 496 CLDSENGKCQCPPGFKGDG 514 (560)
Q Consensus 496 C~n~gs~~C~C~~Gf~~dg 514 (560)
|.......|.||.||..|.
T Consensus 12 CDpn~~~~C~CPeGyIlde 30 (34)
T PF09064_consen 12 CDPNSPGQCFCPEGYILDE 30 (34)
T ss_pred cCCCCCCceeCCCceEecC
Confidence 5444445899999998653
No 74
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=42.75 E-value=13 Score=43.39 Aligned_cols=89 Identities=27% Similarity=0.606 Sum_probs=46.9
Q ss_pred CccccCCCCCCcccCCC--CCCcCCCCCCCcccceecCCce---EE--EccCCCCceee-cCCccceeeeCCCCccCCCC
Q 008587 410 PAVCLSGDVETNECLDN--NGGCWQDKTANVTACKDTFRGR---VC--ECPLVDGVQFK-GDGYSHCEVSGPGKCKINNG 481 (560)
Q Consensus 410 p~~C~~~c~didEC~~~--~~~C~~~~~~~~~~C~nt~gsy---~C--~C~~~~g~g~~-gdg~~~C~di~~~eC~~~~~ 481 (560)
|..|..+|..-.+|-.. -|+|.+.++ -+.|+.-.+-| .| .||+ .+. -.+.+ |... .+|..-.+
T Consensus 221 p~~~g~gC~ang~cCH~eClGgC~~~~d--ptaC~aCr~~y~~G~CV~~Cp~----~~Y~~e~~R-Cvt~--~~C~~l~~ 291 (1025)
T KOG4258|consen 221 PENCGNGCTANGECCHEECLGGCSQPND--PTACVACRGLYDDGVCVEACPP----DYYLFENWR-CVTR--EECALLHS 291 (1025)
T ss_pred ccccccCcccccccccHhhccCcCCCCC--hhHhHHhhccccCCceeccCCc----chhhhccce-eccH--HHHHHhcC
Confidence 44455555554444432 256743322 24444444433 48 7998 555 33334 9887 88886554
Q ss_pred CCCCCCcCCCcc-cccccCCCceeeCCCCcccCC
Q 008587 482 GCWHESKDGHTY-SACLDSENGKCQCPPGFKGDG 514 (560)
Q Consensus 482 ~C~~~~~~~~~~-~~C~n~gs~~C~C~~Gf~~dg 514 (560)
+......|.-+ +.|+. +||.||+-+.
T Consensus 292 -~~~~~i~G~~~~~~Cv~------~CPsGy~~N~ 318 (1025)
T KOG4258|consen 292 -LSNSVISGVIHAGQCVA------KCPSGYKRNS 318 (1025)
T ss_pred -cccccccceeccccchh------hCCCcceecC
Confidence 54443322211 12433 7999998554
No 75
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=41.18 E-value=2.1e+02 Score=30.53 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=59.7
Q ss_pred CcEEEEecCCCCHHHHH--HHHHHcCCcEEEEEecCCCceeecCCCccccccccccCccceeEEEEcHHHHHHHHHHHhC
Q 008587 96 PNFVLVDRGDCFFALKV--WNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (560)
Q Consensus 96 ~~IvLV~RG~CsF~~Kv--~nAq~aGA~avIV~n~~~~~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~ 173 (560)
|.+++.+|-+=-...|. ..|.++||.|+|+-.+.+..+++-+.-.- ......-.||++.+...++..++.
T Consensus 90 Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy----~~~s~PtPIPva~v~en~~~y~~~---- 161 (486)
T COG4882 90 GRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGY----SVSSSPTPIPVAVVPENYSRYAEE---- 161 (486)
T ss_pred CeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEecccccc----cCCCCCCCcceEEeccCcchhhcc----
Confidence 67888777665555554 36789999999998776554444321100 001124579999999888866553
Q ss_pred CCeEEEEEEecccccCCCCceeEEEEeecCcc
Q 008587 174 GEMVNVNLDWREAVPHPDDRVEYELWTNSNDE 205 (560)
Q Consensus 174 ~~~V~v~l~~~~~~p~~~~~v~~~~w~~s~~~ 205 (560)
...|.+.++. - +.-+-.|++++.+..+
T Consensus 162 ~~rvrl~vD~---~--~~~ty~y~~Ia~~~~e 188 (486)
T COG4882 162 AGRVRLWVDA---C--VERTYDYNVIAVDGGE 188 (486)
T ss_pred ceeEEEEEec---c--cceeEEEEEEEecCCC
Confidence 2356666655 2 2444667777666664
No 76
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.67 E-value=24 Score=33.50 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=38.2
Q ss_pred HhHHHHHHHcCCCHHHHccccCCCCCCCCchhhHHHHHHHcCCCCccceEecceeEEcCe-eecccc
Q 008587 326 ECAAAVIKSLGLDAKKIEKCMGDPDADADNPVLKEEQDAQVGKGSRGDVTILPTLVVNNR-QYRGKL 391 (560)
Q Consensus 326 ~Cs~~v~~~~gi~~~~I~~C~~ds~~~~~N~iLe~e~~~q~~~~~~~~v~~~P~l~IN~~-~~rG~l 391 (560)
+=-..+.+.+|+|.+++.+++.+... ...|+++.+.-. +.+|.-.|+++|||. ...|-.
T Consensus 132 ~~l~~~a~~~Gld~~~~~~~~~~~~~---~~~~~~~~~~a~----~~gv~G~Pt~vv~g~~~~~G~~ 191 (201)
T cd03024 132 DVLVDLAEEAGLDAAEARAVLASDEY---ADEVRADEARAR----QLGISGVPFFVFNGKYAVSGAQ 191 (201)
T ss_pred HHHHHHHHHcCCCHHHHHHHhcCccc---chHHHHHHHHHH----HCCCCcCCEEEECCeEeecCCC
Confidence 33456778899999999999987643 233343333222 234889999999975 334443
No 77
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=40.42 E-value=24 Score=34.26 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCHHHHccccCCCCCCCCchhhHHHHHHHcCCCCccceEecceeEEcCeeec
Q 008587 328 AAAVIKSLGLDAKKIEKCMGDPDADADNPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYR 388 (560)
Q Consensus 328 s~~v~~~~gi~~~~I~~C~~ds~~~~~N~iLe~e~~~q~~~~~~~~v~~~P~l~IN~~~~r 388 (560)
-.++.+..|+|.+++++|+.+.. ....+++..+.- .+..|.-.|+++|||....
T Consensus 126 L~~~a~~~Gld~~~f~~~l~s~~---~~~~v~~~~~~a----~~~gI~gtPtfiInGky~v 179 (207)
T PRK10954 126 IRDVFIKAGVKGEDYDAAWNSFV---VKSLVAQQEKAA----ADLQLRGVPAMFVNGKYMV 179 (207)
T ss_pred HHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHH----HHcCCCCCCEEEECCEEEE
Confidence 44566778999999999998743 223444333321 2344888999999998543
No 78
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=39.81 E-value=46 Score=34.19 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCC------ceeecCCCccccccccccCccceeEEEEcHHH-HHHHHHHHhCCCeEE
Q 008587 107 FFALKVWNAQKAGASAVLVADDIEE------ALITMDTPEEDISSAKYIENITIPSALIDKSF-GETLKKALSGGEMVN 178 (560)
Q Consensus 107 sF~~Kv~nAq~aGA~avIV~n~~~~------~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~-G~~L~~~l~~~~~V~ 178 (560)
+-+++++-|.+|||.+|++.+..+. ....|..|++-. .-...++||++.+-|.+ -...+...+.|..+.
T Consensus 16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~---~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiI 91 (283)
T cd04727 16 TNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIK---EIMDAVSIPVMAKVRIGHFVEAQILEALGVDMI 91 (283)
T ss_pred CCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHH---HHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEE
Confidence 4578999999999999999776553 344665554310 11124699999998776 333344445565443
No 79
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=39.20 E-value=15 Score=35.28 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=47.6
Q ss_pred ccceecCCceEEEccCCCCceeecCCccceeeeCCCCccC---CCCCCCCCCcCCCcccccccC------CCceeeCCCC
Q 008587 439 TACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKI---NNGGCWHESKDGHTYSACLDS------ENGKCQCPPG 509 (560)
Q Consensus 439 ~~C~nt~gsy~C~C~~~~g~g~~gdg~~~C~di~~~eC~~---~~~~C~~~~~~~~~~~~C~n~------gs~~C~C~~G 509 (560)
+........|.|.|.+ ||.-.....|+.. .+|.. .+-.|..-+ .|.+. ..|.|.|-+|
T Consensus 11 G~LiQMSNHfEC~Cne----gfvl~~EntCE~k--v~C~~~e~~~K~Cgdya-------~C~~~~~~~~~~~~~C~C~~g 77 (197)
T PF06247_consen 11 GYLIQMSNHFECKCNE----GFVLKNENTCEEK--VECDKLENVNKPCGDYA-------KCINQANKGEERAYKCDCING 77 (197)
T ss_dssp EEEEEESSEEEEEEST----TEEEEETTEEEE------SG-GGTTSEEETTE-------EEEE-SSTTSSTSEEEEE-TT
T ss_pred CEEEEccCceEEEcCC----CcEEccccccccc--eecCcccccCccccchh-------hhhcCCCcccceeEEEecccC
Confidence 4445567899999999 7764333349988 78875 234465433 37655 3599999999
Q ss_pred cccCCCcccccCCCCCCCCCCCCCCccCCCC
Q 008587 510 FKGDGVKSCILMNAKRGKPVSALSVAAKTPG 540 (560)
Q Consensus 510 f~~dg~~sC~didEC~~~~~C~~~~~~~~~g 540 (560)
|.... ..|.. ++|... .|..+-|.-.|.
T Consensus 78 Y~~~~-~vCvp-~~C~~~-~Cg~GKCI~d~~ 105 (197)
T PF06247_consen 78 YILKQ-GVCVP-NKCNNK-DCGSGKCILDPD 105 (197)
T ss_dssp EEESS-SSEEE-GGGSS----TTEEEEEEEG
T ss_pred ceeeC-CeEch-hhcCce-ecCCCeEEecCC
Confidence 98543 23643 356554 366665554443
No 80
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.31 E-value=9.9 Score=38.97 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=34.5
Q ss_pred EEEEecCCCCHHHHHHHHHHcCCcEEEEEecCCCc---eeecCCCc
Q 008587 98 FVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA---LITMDTPE 140 (560)
Q Consensus 98 IvLV~RG~CsF~~Kv~nAq~aGA~avIV~n~~~~~---l~~m~~~~ 140 (560)
+.++.||+|+..+|.+-+++.+-+|||..++.... +.-|..|+
T Consensus 149 ~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~~frlhymvapd 194 (374)
T COG5540 149 DRCNRRGNETEEDPTRERRRTRFKGVIRGSERNGETFRLHYMVAPD 194 (374)
T ss_pred HHHHHccCccccCccccchhccccceeeccccCCceEEEEEEeccC
Confidence 56788999999999999999999999999987643 23454443
No 81
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=34.53 E-value=33 Score=29.72 Aligned_cols=31 Identities=32% Similarity=0.831 Sum_probs=21.4
Q ss_pred CCccCCCCCCCCCCcCCCcccccccCCCceeeCCCCccc
Q 008587 474 GKCKINNGGCWHESKDGHTYSACLDSENGKCQCPPGFKG 512 (560)
Q Consensus 474 ~eC~~~~~~C~~~~~~~~~~~~C~n~gs~~C~C~~Gf~~ 512 (560)
+.|.. .+.|+..+. |....+..|.|++||+.
T Consensus 78 d~Cd~-y~~CG~~g~-------C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 78 DQCDV-YGFCGPNGI-------CNSNNSPKCSCLPGFEP 108 (110)
T ss_pred cCCCC-ccccCCccE-------eCCCCCCceECCCCcCC
Confidence 56664 457877654 84435667999999974
No 82
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=33.57 E-value=28 Score=33.46 Aligned_cols=93 Identities=23% Similarity=0.436 Sum_probs=51.2
Q ss_pred ccceeeeccc-CcccCCCCccccCCCCCCcccCC-CCCCcCCCCCCCcccceecC-----CceEEEccCCCCceeecCCc
Q 008587 393 KGAVLKAICS-GFEETTEPAVCLSGDVETNECLD-NNGGCWQDKTANVTACKDTF-----RGRVCECPLVDGVQFKGDGY 465 (560)
Q Consensus 393 ~~~v~~~iC~-g~~~~~~p~~C~~~c~didEC~~-~~~~C~~~~~~~~~~C~nt~-----gsy~C~C~~~~g~g~~gdg~ 465 (560)
.+.-|++.|. ||...+ ... |....+|.. .+-. .+|+..+.|.+.. +.|.|.|.+ ||....-
T Consensus 16 MSNHfEC~Cnegfvl~~-Ent----CE~kv~C~~~e~~~---K~Cgdya~C~~~~~~~~~~~~~C~C~~----gY~~~~~ 83 (197)
T PF06247_consen 16 MSNHFECKCNEGFVLKN-ENT----CEEKVECDKLENVN---KPCGDYAKCINQANKGEERAYKCDCIN----GYILKQG 83 (197)
T ss_dssp ESSEEEEEESTTEEEEE-TTE----EEE----SG-GGTT---SEEETTEEEEE-SSTTSSTSEEEEE-T----TEEESSS
T ss_pred ccCceEEEcCCCcEEcc-ccc----cccceecCcccccC---ccccchhhhhcCCCcccceeEEEeccc----CceeeCC
Confidence 4556889996 665432 223 445666754 2211 1235678898775 689999999 8886544
Q ss_pred cceeeeCCCCccCCCCCCCCCCcCCCcccccccC----CCceeeCCCCcc
Q 008587 466 SHCEVSGPGKCKINNGGCWHESKDGHTYSACLDS----ENGKCQCPPGFK 511 (560)
Q Consensus 466 ~~C~di~~~eC~~~~~~C~~~~~~~~~~~~C~n~----gs~~C~C~~Gf~ 511 (560)
. |.. ++|. +-.|... .|+-. ....|+|.-|+.
T Consensus 84 v-Cvp---~~C~--~~~Cg~G--------KCI~d~~~~~~~~CSC~IGkV 119 (197)
T PF06247_consen 84 V-CVP---NKCN--NKDCGSG--------KCILDPDNPNNPTCSCNIGKV 119 (197)
T ss_dssp S-EEE---GGGS--S---TTE--------EEEEEEGGGSEEEEEE-TEEE
T ss_pred e-Ech---hhcC--ceecCCC--------eEEecCCCCCCceeEeeeceE
Confidence 4 765 5675 3456643 26332 345899999997
No 83
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=30.97 E-value=38 Score=34.78 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCC------CceeecCCCccccccccccCccceeEEEEcHHH
Q 008587 107 FFALKVWNAQKAGASAVLVADDIE------EALITMDTPEEDISSAKYIENITIPSALIDKSF 163 (560)
Q Consensus 107 sF~~Kv~nAq~aGA~avIV~n~~~------~~l~~m~~~~~~~~~~~~~~~i~IPsv~Is~~~ 163 (560)
+-.++++-|++|||.||+.-...+ +....|..|.+-. .-...++||++.+-+..
T Consensus 18 ~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~---~I~~~V~iPVig~~kig 77 (287)
T TIGR00343 18 VNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIK---EIMDAVSIPVMAKVRIG 77 (287)
T ss_pred CCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHH---HHHHhCCCCEEEEeecc
Confidence 457899999999999999966544 3455776654311 11124699999987764
No 84
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=29.48 E-value=31 Score=32.36 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=38.0
Q ss_pred hHHHHHHHcCCCHHHHccccCCCCCCCCchhhHHHHHHHcCCCCccceEecceeEEcCe-eeccccc
Q 008587 327 CAAAVIKSLGLDAKKIEKCMGDPDADADNPVLKEEQDAQVGKGSRGDVTILPTLVVNNR-QYRGKLE 392 (560)
Q Consensus 327 Cs~~v~~~~gi~~~~I~~C~~ds~~~~~N~iLe~e~~~q~~~~~~~~v~~~P~l~IN~~-~~rG~l~ 392 (560)
=...+++++|+|.+++++-+.++. ....|+++...... ..|.-.|+++|||. .+.|.-.
T Consensus 125 vl~~~~~~~Gld~~~~~~~~~~~~---~~~~~~~~~~~a~~----~gv~GvP~~vv~g~~~~~G~~~ 184 (193)
T PF01323_consen 125 VLAEIAEEAGLDPDEFDAALDSPE---VKAALEEDTAEARQ----LGVFGVPTFVVNGKYRFFGADR 184 (193)
T ss_dssp HHHHHHHHTT--HHHHHHHHTSHH---HHHHHHHHHHHHHH----TTCSSSSEEEETTTEEEESCSS
T ss_pred HHHHHHHHcCCcHHHHHHHhcchH---HHHHHHHHHHHHHH----cCCcccCEEEECCEEEEECCCC
Confidence 345577888999999999887643 22344444443322 33788999999998 6667643
No 85
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=28.54 E-value=40 Score=22.75 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=16.0
Q ss_pred CcccceecCCceEEEccCCCCceeecCC
Q 008587 437 NVTACKDTFRGRVCECPLVDGVQFKGDG 464 (560)
Q Consensus 437 ~~~~C~nt~gsy~C~C~~~~g~g~~gdg 464 (560)
++..|++. ..+|.|.+ ||.|+.
T Consensus 10 ~~G~C~~~--~g~C~C~~----g~~G~~ 31 (32)
T PF07974_consen 10 GHGTCVSP--CGRCVCDS----GYTGPD 31 (32)
T ss_pred CCCEEeCC--CCEEECCC----CCcCCC
Confidence 45667654 56899999 888753
No 86
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=27.61 E-value=22 Score=33.89 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCC------CceeecCCCccccccccccCccceeEEE---EcHHHHHHHHHHHh
Q 008587 107 FFALKVWNAQKAGASAVLVADDIE------EALITMDTPEEDISSAKYIENITIPSAL---IDKSFGETLKKALS 172 (560)
Q Consensus 107 sF~~Kv~nAq~aGA~avIV~n~~~------~~l~~m~~~~~~~~~~~~~~~i~IPsv~---Is~~~G~~L~~~l~ 172 (560)
+-.++++-|++|||.||+.-...+ +....|.+|.-- -+-...++||+.- |.+-.-.+|+++|.
T Consensus 22 ~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I---~eI~~aVsIPVMAK~RIGHfvEAqiLealg 93 (208)
T PF01680_consen 22 TNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMI---KEIMDAVSIPVMAKVRIGHFVEAQILEALG 93 (208)
T ss_dssp SSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHH---HHHHHH-SSEEEEEEETT-HHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHH---HHHHHheEeceeeccccceeehhhhHHHhC
Confidence 447899999999999999987654 345567654310 0111246899863 55555566777775
No 87
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=24.74 E-value=66 Score=38.45 Aligned_cols=72 Identities=31% Similarity=0.643 Sum_probs=48.6
Q ss_pred CCcccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceeecCCccceeeeCCCCccCCCCCCCCCCcCCCcccccc-
Q 008587 419 ETNECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGKCKINNGGCWHESKDGHTYSACL- 497 (560)
Q Consensus 419 didEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~gdg~~~C~di~~~eC~~~~~~C~~~~~~~~~~~~C~- 497 (560)
.+++|......| .+.|.++.....|.|.. +..+.....+ +. ..|...++.|.+- |.
T Consensus 324 ~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~--~~~~~~~~~~---~~--~~~~~~~g~Csq~---------C~~ 380 (877)
T KOG1215|consen 324 GLNECAERVLKC-------SHKCPDVSVGPRCDCMG--AKVLPLGART---DS--NPCESDNGGCSQL---------CVP 380 (877)
T ss_pred ccccchhhcccc-------cCCCCccccCCcccCCc--cceecccccc---cC--CcccccCCcccee---------ccC
Confidence 456666666666 36778888888999988 2222222222 22 5566678888876 87
Q ss_pred cC-CCceeeCCCCcccC
Q 008587 498 DS-ENGKCQCPPGFKGD 513 (560)
Q Consensus 498 n~-gs~~C~C~~Gf~~d 513 (560)
+. +.+.|.|..||...
T Consensus 381 ~~p~~~~c~c~~g~~~~ 397 (877)
T KOG1215|consen 381 NSPGTFKCACSPGYELR 397 (877)
T ss_pred CCCCceeEecCCCcEec
Confidence 44 89999999999743
No 88
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=24.72 E-value=51 Score=29.69 Aligned_cols=40 Identities=20% Similarity=0.475 Sum_probs=27.0
Q ss_pred CCcccCCCCC-CcCCCCCCCcccceecC--CceEEEccCCCCceeecCCccceeee
Q 008587 419 ETNECLDNNG-GCWQDKTANVTACKDTF--RGRVCECPLVDGVQFKGDGYSHCEVS 471 (560)
Q Consensus 419 didEC~~~~~-~C~~~~~~~~~~C~nt~--gsy~C~C~~~~g~g~~gdg~~~C~di 471 (560)
++.+|..... -|. ++.|.-.. ..+.|.|+. ||.|.. |+-.
T Consensus 41 ~i~~Cp~ey~~YCl------HG~C~yI~dl~~~~CrC~~----GYtGeR---CEh~ 83 (139)
T PHA03099 41 AIRLCGPEGDGYCL------HGDCIHARDIDGMYCRCSH----GYTGIR---CQHV 83 (139)
T ss_pred ccccCChhhCCEeE------CCEEEeeccCCCceeECCC----Cccccc---ccce
Confidence 4566665433 364 34676544 689999999 999875 8755
No 89
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.84 E-value=61 Score=39.26 Aligned_cols=6 Identities=33% Similarity=1.126 Sum_probs=4.5
Q ss_pred EEEccC
Q 008587 449 VCECPL 454 (560)
Q Consensus 449 ~C~C~~ 454 (560)
+|+|.+
T Consensus 1085 QCqCkp 1090 (1758)
T KOG0994|consen 1085 QCQCKP 1090 (1758)
T ss_pred ceeccC
Confidence 577888
No 90
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=23.78 E-value=78 Score=24.30 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=13.2
Q ss_pred HHHHHHHHHhccCccceEEEEe
Q 008587 12 FLGFLILSLNVHTSVSRFVVEK 33 (560)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ve~ 33 (560)
+++++++ +.+..+.|.+||-.
T Consensus 6 ~~~~~~~-~~~~~a~AQWvV~D 26 (55)
T PF13605_consen 6 MLCVACL-LLAGPARAQWVVTD 26 (55)
T ss_pred HHHHHHH-hcCCcceeEEEEeC
Confidence 3333333 66778889887654
No 91
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=22.27 E-value=62 Score=27.94 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=21.1
Q ss_pred cccCCCCCCcCCCCCCCcccceecCCceEEEccCCCCceeec
Q 008587 421 NECLDNNGGCWQDKTANVTACKDTFRGRVCECPLVDGVQFKG 462 (560)
Q Consensus 421 dEC~~~~~~C~~~~~~~~~~C~nt~gsy~C~C~~~~g~g~~g 462 (560)
+.| ...+.| ++.+.| +......|.|++ ||..
T Consensus 78 d~C-d~y~~C-----G~~g~C-~~~~~~~C~Cl~----GF~P 108 (110)
T PF00954_consen 78 DQC-DVYGFC-----GPNGIC-NSNNSPKCSCLP----GFEP 108 (110)
T ss_pred cCC-CCcccc-----CCccEe-CCCCCCceECCC----CcCC
Confidence 456 345566 567889 344566899999 8764
No 92
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=20.92 E-value=52 Score=32.85 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCC------CceeecCCCccccccccccCccceeEE---EEcHHHHHHHHHHHh
Q 008587 106 CFFALKVWNAQKAGASAVLVADDIE------EALITMDTPEEDISSAKYIENITIPSA---LIDKSFGETLKKALS 172 (560)
Q Consensus 106 CsF~~Kv~nAq~aGA~avIV~n~~~------~~l~~m~~~~~~~~~~~~~~~i~IPsv---~Is~~~G~~L~~~l~ 172 (560)
-+-.++++-|..|||.||+.....+ +....|..|.-- -+-...++||+. -|.+-.-..++++|.
T Consensus 27 V~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i---~eim~aVsIPVMAKvRIGH~~EA~iLealg 99 (296)
T COG0214 27 VVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMI---EEIMDAVSIPVMAKVRIGHFVEAQILEALG 99 (296)
T ss_pred ecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHH---HHHHHhcccceeeeeecchhHHHHHHHHhC
Confidence 3557899999999999999987665 344567655320 011234689985 355555556666664
Done!