BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008588
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
pdb|2H5G|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
Length = 463
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/421 (48%), Positives = 278/421 (66%), Gaps = 8/421 (1%)
Query: 145 ARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL 204
AR R L L+ + R +I+ +AD L I + N+ D+ A E A L+ RL+L
Sbjct: 38 ARSGGRXLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA-EGRLAAPLLKRLSL 96
Query: 205 KPGKISSLAKSIR-ILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALV 263
K++SLA +R I A ++ +G++L+RT +A L LE+ + P+GVLL++FESRPD L
Sbjct: 97 STSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLP 156
Query: 264 QIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXX 323
Q+A+LAI SGNGLLLKGGKEA SN ILH + A+ ++ + LV +REE+
Sbjct: 157 QVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRL 216
Query: 324 XXXXXXXXPRGSNKLVSQIKESTK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDY 382
PRGS++LV I+++ K IPV GH++GICH YVD A++D +V D+K +Y
Sbjct: 217 DKXIDLIIPRGSSQLVRDIQKAAKGIPVXGHSEGICHXYVDSEASVDKVTRLVRDSKCEY 276
Query: 383 PAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPR-ASKLLQIP-ETRLFHHEY 440
PAACNA+ETLL+H+DL ++++ L+ E V + GP+ AS L P E + EY
Sbjct: 277 PAACNALETLLIHRDLLRTPLFDQIIDXLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEY 336
Query: 441 NSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFC 500
+ +E+VD+V+ AIDHIH++GS+HTD IV ED+ AE FL VDSA VF NASTRF
Sbjct: 337 GDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFS 396
Query: 501 DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQGVV-YTHKNLA 557
DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+LRG HVV + G + Y H+NL
Sbjct: 397 DGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLP 456
Query: 558 L 558
+
Sbjct: 457 I 457
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 306 bits (785), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/452 (38%), Positives = 262/452 (57%), Gaps = 33/452 (7%)
Query: 139 REMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSL 198
+++A AR++ L+ + ++ R IL + DAL+AN I+ N+ D+A A+E G A SL
Sbjct: 17 QQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSL 76
Query: 199 VSRLALKPG-KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES 257
+ RL L G K + I+ +A++E+P+G++ EL DGL L + + P+GVLL++FES
Sbjct: 77 LKRLDLFKGDKFEVXLQGIKDVAELEDPVGKVKXARELDDGLTLYQVTAPVGVLLVIFES 136
Query: 258 RPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEK-----LIGLVT 312
RP+ + I +L+I+SGN +LKGGKE++ + K++ I E + L+
Sbjct: 137 RPEVIANITALSIKSGNAAILKGGKESVNTFREXAKIVNDTIAQFQSETGVPVGSVQLIE 196
Query: 313 SREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAK 372
+R+++ PRGSN LV +IK++TKIPVLGHADGIC +Y+D+ A+L AK
Sbjct: 197 TRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADLIKAK 256
Query: 373 NIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEG----------------- 415
I +DAK +YPA CNA ETLL++ + E++ L EG
Sbjct: 257 RISLDAKTNYPAGCNAXETLLINPKFS---KWWEVLENLTLEGGVTIHATKDLKTAYFDK 313
Query: 416 ---VGLFGGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIV 472
+G K + E + F E+ S+ + V +AI HI+ H S HTD IV
Sbjct: 314 LNELGKLTEAIQCKTVDADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIV 373
Query: 473 AEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 532
E++ AE F VDS+ V+ NASTRF DG R+G GAEVGISTS+IHARGPVG++GL++
Sbjct: 374 TENKANAEKFXKGVDSSGVYWNASTRFADGFRYGFGAEVGISTSKIHARGPVGLDGLVSY 433
Query: 533 RWILRGNGHVVDGDQGV----VYTHKNLALQS 560
++ +RG+G V G + HK+L +++
Sbjct: 434 QYQIRGDGQVASDYLGAGGNKAFVHKDLDIKT 465
>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
(tm0293) From Thermotoga Maritima At 2.00 A Resolution
Length = 427
Score = 248 bits (633), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 142/409 (34%), Positives = 236/409 (57%), Gaps = 7/409 (1%)
Query: 140 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLV 199
E A RE+ L+ ++++ K + +A+ L+ I N DV A+E G +SLV
Sbjct: 18 EKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLV 77
Query: 200 SRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRP 259
RLAL +I K+ + +++P+G+++ DGL + + P+G + I++ESRP
Sbjct: 78 DRLALNDKRIDEXIKACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRP 137
Query: 260 DALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLV--TSREE 316
+ V+ LA++SGN +LL+GG +A+ SN + I A+ +T + E + + T R
Sbjct: 138 NVTVETTILALKSGNTILLRGGSDALNSNKAIVSAIREALKETEIPESSVEFIENTDRSL 197
Query: 317 IPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVI 376
+ PRG L+S ++++ +PVL G CH++VD+SA+L A ++I
Sbjct: 198 VLEXIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKAVPVII 257
Query: 377 DAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ--IPETR 434
+AK P CNA E LLVH+ +A L +V EL+ GV + G + +++ +P T
Sbjct: 258 NAKTQRPGTCNAAEKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATE 316
Query: 435 L-FHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFH 493
+ EY ++ +++V +V AI+HI ++ + H++ I+ E+ A+ F+ ++D+AAV+
Sbjct: 317 DDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYV 376
Query: 494 NASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 542
NASTRF DG +FG GAE+GIST R HARGPVG+ L T ++++ G HV
Sbjct: 377 NASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLGEYHV 425
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 238 bits (607), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 217/386 (56%), Gaps = 12/386 (3%)
Query: 167 VADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI 226
VA A+E + +K N DVA A++ G + V RL L + ++ + +R +A + +PI
Sbjct: 57 VARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVEGLRQVATLPDPI 116
Query: 227 GQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMR 286
G++ G+ + + PLGV+ I++ESRP+ + A+L ++SGN +L+GG EA+
Sbjct: 117 GEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALE 176
Query: 287 SNAILHKVITSAIPDT-VGEKLIGLVTS--REEIPXXXXXXXXXXXXXPRGSNKLVSQIK 343
SN L K+I + + + + + +V + R + PRG L+ ++
Sbjct: 177 SNTALAKLIGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLI 236
Query: 344 ESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGA 403
++P++ H DGICHVYVD A++ A + +AK CN METLLV + +A
Sbjct: 237 NEARVPMIKHLDGICHVYVDDRASVTKALTVCDNAKTHRYGTCNTMETLLVARGIA-PAV 295
Query: 404 LNELVVELQHEGVGLFGGPRASKLLQIP--------ETRLFHHEYNSMVCTVEIVDDVRA 455
L+ L + +GV L A +L+ + EY + V ++IVD + A
Sbjct: 296 LSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAPVLAIKIVDGIDA 355
Query: 456 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGIST 515
AI+HI+++GS HTD IV ED A FL +VDSA+V NASTRF DG FGLGAE+GIS
Sbjct: 356 AIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISN 415
Query: 516 SRIHARGPVGVEGLLTTRWILRGNGH 541
++HARGPVG+EGL + ++++ G+G
Sbjct: 416 DKLHARGPVGLEGLTSLKYVVLGHGE 441
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 20 DNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDK-S 77
DND+ +D +GLY+ P S P ++LI GD S
Sbjct: 148 DNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVS 207
Query: 78 RVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSIIKVLEGKRVGTLFHRDA 129
+G GGM+ K+ GI +I +G I V+EG VGTLFH A
Sbjct: 208 GLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA 259
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 20 DNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDK-S 77
DND+ +D +GLY+ P S P ++LI GD S
Sbjct: 148 DNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVS 207
Query: 78 RVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSIIKVLEGKRVGTLFHRDA 129
+G GGM+ K+ GI +I +G I V+EG VGTLFH A
Sbjct: 208 GLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA 259
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 117/293 (39%), Gaps = 33/293 (11%)
Query: 147 ESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKP 206
E+ +R +A S R + L LEA + LI+ E E ++ A A K+ +
Sbjct: 22 EAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQ-EQEQELVGALAADLHKNEWN------ 74
Query: 207 GKISSLAKSIRILADMEEPIGQILKRTELADGLILEKT-----------SCPLGVLLIV- 254
+ + + +L ++E I K E A +EKT S PLGV+L++
Sbjct: 75 ---AYYEEVVYVLEEIEY---MIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIG 128
Query: 255 -FESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS 313
+ + +Q AI +GN ++LK + + ++L +I + + + G V
Sbjct: 129 TWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPE 188
Query: 314 REEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKN 373
E+ G K++ PV G YVDK+ +LDVA
Sbjct: 189 TTEL--LKERFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACR 246
Query: 374 IVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK 426
+I + N+ +T + + C+ ++ +VE + + F G A K
Sbjct: 247 -----RIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKK 294
>pdb|1AD3|A Chain A, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
pdb|1AD3|B Chain B, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
Length = 452
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 15/222 (6%)
Query: 209 ISSLAKSIRILADM--EEPIGQILKRTELADGLILEKTSCPLGVLLIV--FESRPDALVQ 264
+ L +I+ L D +EP+ + R D L + S PLGV+L++ + + +Q
Sbjct: 67 LEELDTTIKELPDWAEDEPVAKT--RQTQQDDLYIH--SEPLGVVLVIGAWNYPFNLTIQ 122
Query: 265 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXX 324
A+ +GN ++LK + + +L +I + + + G V E+
Sbjct: 123 PMVGAVAAGNAVILKPSEVSGHMADLLATLIPQYMDQNLYLVVKGGVPETTELLKERFDH 182
Query: 325 XXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA 384
G + + K T PV G YVDK +LDVA +I +
Sbjct: 183 IMYTGSTAVGKIVMAAAAKHLT--PVTLELGGKSPCYVDKDCDLDVACR-----RIAWGK 235
Query: 385 ACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK 426
N+ +T + + C+ ++ +VE + + F G A +
Sbjct: 236 FMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKDFYGEDAKQ 277
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 508 GAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNL 556
G EV +ST R H E L W++ NG V+ +G +Y H+ +
Sbjct: 37 GIEVVVSTGRAHFDVXSIFEPLGIKTWVISANGAVIHDPEGRLYHHETI 85
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 431 PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSA----HTDCIV-AEDQKVAETFLCQ 485
PE RL+ EY A++ I G+A +D IV A ++KV T L Q
Sbjct: 2 PEGRLYQVEY---------------ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQ 46
Query: 486 VDSAAVFHNASTRFCDG-ARFGLGAEVGISTSRIHAR 521
S + + + A AE+ I+T+RIHA+
Sbjct: 47 DTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ 83
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 431 PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSA----HTDCIV-AEDQKVAETFLCQ 485
PE RL+ EY A++ I G+A +D IV A ++KV T L Q
Sbjct: 15 PEGRLYQVEY---------------ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQ 59
Query: 486 VDSAAVFHNASTRFCDG-ARFGLGAEVGISTSRIHAR 521
S + + + A AE+ I+T+RIHA+
Sbjct: 60 DTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ 96
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 431 PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSA----HTDCIV-AEDQKVAETFLCQ 485
PE RL+ EY A++ I G+A +D IV A ++KV T L Q
Sbjct: 5 PEGRLYQVEY---------------ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQ 49
Query: 486 VDSAAVFHNASTRFCDG-ARFGLGAEVGISTSRIHAR 521
S + + + A AE+ I+T+RIHA+
Sbjct: 50 DTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ 86
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 431 PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSA----HTDCIV-AEDQKVAETFLCQ 485
PE RL+ EY A++ I G+A +D IV A ++KV T L Q
Sbjct: 14 PEGRLYQVEY---------------ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQ 58
Query: 486 VDSAAVFHNASTRFCDG-ARFGLGAEVGISTSRIHAR 521
S + + + A AE+ I+T+RIHA+
Sbjct: 59 DTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ 95
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 431 PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSA----HTDCIV-AEDQKVAETFLCQ 485
PE RL+ EY A++ I G+A +D IV A ++KV T L Q
Sbjct: 15 PEGRLYQVEY---------------ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQ 59
Query: 486 VDSAAVFHNASTRFCDG-ARFGLGAEVGISTSRIHAR 521
S + + + A AE+ I+T+RIHA+
Sbjct: 60 DTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,566,387
Number of Sequences: 62578
Number of extensions: 540401
Number of successful extensions: 1490
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1470
Number of HSP's gapped (non-prelim): 24
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)