Query 008588
Match_columns 560
No_of_seqs 369 out of 2326
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:03:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o20_A Gamma-glutamyl phosphat 100.0 4.1E-88 1.4E-92 723.9 43.3 409 134-543 12-426 (427)
2 2wme_A BADH, betaine aldehyde 100.0 2.3E-86 7.9E-91 719.5 40.5 401 112-541 26-485 (490)
3 4ghk_A Gamma-glutamyl phosphat 100.0 2E-86 6.7E-91 714.2 39.3 408 135-543 25-443 (444)
4 1vlu_A Gamma-glutamyl phosphat 100.0 2.1E-83 7.3E-88 693.6 41.6 420 135-556 13-461 (468)
5 3ek1_A Aldehyde dehydrogenase; 100.0 4E-83 1.4E-87 697.0 41.2 401 112-541 52-504 (504)
6 2h5g_A Delta 1-pyrroline-5-car 100.0 2.5E-82 8.4E-87 684.5 42.8 437 112-556 11-455 (463)
7 3ifg_A Succinate-semialdehyde 100.0 1.1E-82 3.8E-87 691.2 40.1 398 112-538 32-483 (484)
8 4f3x_A Putative aldehyde dehyd 100.0 2.5E-82 8.4E-87 690.3 39.5 400 112-539 44-497 (498)
9 3prl_A NADP-dependent glyceral 100.0 3.2E-82 1.1E-86 690.5 40.1 400 112-539 31-483 (505)
10 3rh9_A Succinate-semialdehyde 100.0 1.1E-82 3.9E-87 693.6 36.4 400 112-541 31-486 (506)
11 3r31_A BADH, betaine aldehyde 100.0 3.4E-82 1.2E-86 691.6 40.0 399 112-543 34-492 (517)
12 3ros_A NAD-dependent aldehyde 100.0 2.6E-82 8.8E-87 687.9 38.7 396 113-539 9-458 (484)
13 1a4s_A ALDH, betaine aldehyde 100.0 1.3E-81 4.5E-86 685.8 42.0 399 112-541 40-498 (503)
14 3ed6_A Betaine aldehyde dehydr 100.0 3.8E-82 1.3E-86 691.7 37.7 400 112-540 52-511 (520)
15 3u4j_A NAD-dependent aldehyde 100.0 6.5E-82 2.2E-86 691.0 39.3 402 113-543 43-502 (528)
16 4e4g_A Methylmalonate-semialde 100.0 7.8E-82 2.7E-86 689.4 37.3 402 112-540 46-506 (521)
17 3pqa_A Lactaldehyde dehydrogen 100.0 1.4E-81 4.9E-86 682.3 37.8 401 112-540 16-465 (486)
18 3k2w_A Betaine-aldehyde dehydr 100.0 2E-81 6.9E-86 683.8 39.0 401 112-541 32-490 (497)
19 1o04_A Aldehyde dehydrogenase, 100.0 3.6E-81 1.2E-85 681.5 40.5 398 113-539 40-495 (500)
20 3iwj_A Putative aminoaldehyde 100.0 2.9E-81 1E-85 683.5 38.9 401 113-540 28-490 (503)
21 3jz4_A Succinate-semialdehyde 100.0 6.8E-81 2.3E-85 677.9 41.4 398 112-538 29-480 (481)
22 1wnd_A Putative betaine aldehy 100.0 7.2E-81 2.4E-85 678.3 41.5 399 112-538 42-494 (495)
23 2o2p_A Formyltetrahydrofolate 100.0 1.7E-81 6E-86 686.0 36.8 401 112-538 56-516 (517)
24 3qan_A 1-pyrroline-5-carboxyla 100.0 7.3E-81 2.5E-85 684.1 40.0 400 112-540 55-517 (538)
25 1bxs_A Aldehyde dehydrogenase; 100.0 7.1E-81 2.4E-85 679.3 39.3 399 112-539 40-496 (501)
26 3b4w_A Aldehyde dehydrogenase; 100.0 8.5E-81 2.9E-85 678.2 39.1 398 112-539 28-482 (495)
27 2d4e_A 5-carboxymethyl-2-hydro 100.0 1E-80 3.4E-85 680.7 39.7 399 112-539 46-505 (515)
28 3lns_A Benzaldehyde dehydrogen 100.0 2.1E-80 7.1E-85 670.0 40.3 404 110-538 8-456 (457)
29 2imp_A Lactaldehyde dehydrogen 100.0 5.5E-80 1.9E-84 670.4 43.2 398 112-538 26-478 (479)
30 2j6l_A Aldehyde dehydrogenase 100.0 2.9E-80 9.8E-85 675.2 40.7 402 112-538 41-498 (500)
31 2w8n_A Succinate-semialdehyde 100.0 4.8E-80 1.6E-84 671.4 42.2 398 112-538 30-485 (487)
32 1uxt_A Glyceraldehyde-3-phosph 100.0 3.1E-80 1.1E-84 674.7 40.7 400 112-539 36-492 (501)
33 2ve5_A BADH, betaine aldehyde 100.0 7.2E-80 2.5E-84 671.6 40.6 400 112-540 26-484 (490)
34 3sza_A Aldehyde dehydrogenase, 100.0 4.6E-80 1.6E-84 668.2 38.6 386 135-540 17-449 (469)
35 4h7n_A Aldehyde dehydrogenase; 100.0 2.8E-80 9.7E-85 671.8 36.3 399 112-540 10-464 (474)
36 1uzb_A 1-pyrroline-5-carboxyla 100.0 1.6E-79 5.6E-84 671.7 41.9 400 112-538 55-515 (516)
37 3i44_A Aldehyde dehydrogenase; 100.0 4.6E-80 1.6E-84 672.3 36.5 395 112-537 45-496 (497)
38 3etf_A Putative succinate-semi 100.0 7.7E-80 2.6E-84 667.0 37.5 396 113-538 12-460 (462)
39 1euh_A NADP dependent non phos 100.0 1.4E-79 4.8E-84 666.6 39.3 397 112-538 22-473 (475)
40 3r64_A NAD dependent benzaldeh 100.0 1.5E-79 5.1E-84 670.8 39.3 402 113-543 33-489 (508)
41 4dng_A Uncharacterized aldehyd 100.0 1.4E-79 4.9E-84 668.5 38.8 400 112-540 26-479 (485)
42 1t90_A MMSDH, probable methylm 100.0 5.6E-79 1.9E-83 663.3 36.3 400 112-539 25-480 (486)
43 3ty7_A Putative aldehyde dehyd 100.0 1.4E-78 4.6E-83 659.6 34.3 392 112-537 27-475 (478)
44 1ez0_A ALDH, aldehyde dehydrog 100.0 5.4E-78 1.8E-82 659.2 35.6 400 113-536 12-480 (510)
45 3v4c_A Aldehyde dehydrogenase 100.0 5.6E-78 1.9E-82 661.7 34.3 403 112-536 44-515 (528)
46 3ju8_A Succinylglutamic semial 100.0 1.7E-76 5.7E-81 644.4 39.3 393 113-541 25-473 (490)
47 4e3x_A Delta-1-pyrroline-5-car 100.0 3.1E-75 1E-79 641.1 39.3 399 113-539 82-551 (563)
48 4f9i_A Proline dehydrogenase/d 100.0 1.2E-74 4.2E-79 669.2 44.3 401 112-540 549-1011(1026)
49 2y53_A Aldehyde dehydrogenase 100.0 1.1E-73 3.9E-78 628.3 37.4 396 112-538 26-518 (534)
50 3haz_A Proline dehydrogenase; 100.0 1E-73 3.5E-78 660.2 38.3 385 134-540 548-988 (1001)
51 3k9d_A LMO1179 protein, aldehy 100.0 1.1E-71 3.9E-76 602.8 36.3 383 135-541 11-451 (464)
52 3my7_A Alcohol dehydrogenase/a 100.0 3.5E-69 1.2E-73 581.6 34.9 381 135-539 6-449 (452)
53 3ll9_A Isopentenyl phosphate k 99.9 7.6E-23 2.6E-27 205.3 9.0 125 1-126 138-266 (269)
54 2j5v_A Glutamate 5-kinase; pro 99.9 2E-22 6.8E-27 210.3 7.7 125 1-128 130-258 (367)
55 2ako_A Glutamate 5-kinase; str 99.9 3.7E-22 1.3E-26 198.6 8.0 122 1-125 123-250 (251)
56 3ll5_A Gamma-glutamyl kinase r 99.8 1.9E-21 6.6E-26 193.0 8.3 119 1-125 127-248 (249)
57 3d40_A FOMA protein; fosfomyci 99.8 1.8E-21 6.2E-26 197.0 8.1 125 1-128 149-283 (286)
58 2j4j_A Uridylate kinase; trans 99.8 6.1E-21 2.1E-25 186.8 9.2 116 1-127 107-225 (226)
59 2rd5_A Acetylglutamate kinase- 99.8 4.3E-20 1.5E-24 188.2 13.0 119 1-127 177-298 (298)
60 2v5h_A Acetylglutamate kinase; 99.8 9.1E-20 3.1E-24 187.3 13.4 120 1-128 189-311 (321)
61 2ap9_A NAG kinase, acetylgluta 99.8 8.2E-20 2.8E-24 186.2 12.3 118 1-128 171-291 (299)
62 3nwy_A Uridylate kinase; allos 99.8 7.5E-20 2.6E-24 183.6 8.1 109 1-126 171-280 (281)
63 3k4o_A Isopentenyl phosphate k 99.8 1.5E-19 5E-24 181.0 9.5 119 1-128 145-265 (266)
64 2egx_A Putative acetylglutamat 99.8 1.5E-19 5E-24 181.6 9.4 114 1-125 152-268 (269)
65 2va1_A Uridylate kinase; UMPK, 99.8 1.9E-19 6.5E-24 179.4 10.1 109 1-126 145-255 (256)
66 2ogx_A Molybdenum storage prot 99.8 9.8E-20 3.4E-24 183.3 8.0 120 1-128 146-272 (276)
67 3ek6_A Uridylate kinase; UMPK 99.8 2.2E-19 7.6E-24 177.4 9.5 110 1-127 131-241 (243)
68 2we5_A Carbamate kinase 1; arg 99.8 2.6E-19 8.9E-24 183.3 10.4 119 1-126 184-309 (310)
69 2a1f_A Uridylate kinase; PYRH, 99.8 3E-19 1E-23 177.1 9.7 113 1-130 130-243 (247)
70 1z9d_A Uridylate kinase, UK, U 99.8 4.7E-19 1.6E-23 176.3 10.6 111 1-128 129-241 (252)
71 2e9y_A Carbamate kinase; trans 99.8 5E-19 1.7E-23 181.6 10.8 118 1-127 188-315 (316)
72 2brx_A Uridylate kinase; UMP k 99.8 1.4E-19 4.9E-24 179.0 6.5 116 1-127 127-244 (244)
73 1ybd_A Uridylate kinase; alpha 99.8 4.8E-19 1.7E-23 174.7 10.1 110 1-127 129-239 (239)
74 2ogx_B Molybdenum storage prot 99.8 4.1E-19 1.4E-23 178.4 9.4 120 1-127 143-269 (270)
75 4a7w_A Uridylate kinase; trans 99.8 1.4E-18 4.7E-23 171.4 9.9 108 1-125 130-239 (240)
76 2ij9_A Uridylate kinase; struc 99.7 1.1E-18 3.7E-23 170.0 7.9 114 1-126 104-219 (219)
77 3kzf_A Carbamate kinase; argin 99.7 2E-18 7E-23 173.8 9.2 117 1-127 199-316 (317)
78 2bty_A Acetylglutamate kinase; 99.7 4.9E-18 1.7E-22 171.7 11.4 116 1-128 162-280 (282)
79 1e19_A Carbamate kinase-like c 99.7 5.1E-18 1.7E-22 173.9 11.4 119 1-127 188-314 (314)
80 2buf_A Acetylglutamate kinase; 99.7 7.5E-18 2.6E-22 171.7 12.0 117 1-128 178-297 (300)
81 1gs5_A Acetylglutamate kinase; 99.7 1.4E-17 4.7E-22 166.2 10.0 114 1-126 142-257 (258)
82 4axs_A Carbamate kinase; oxido 99.7 1.7E-17 5.9E-22 169.8 10.7 104 16-127 227-332 (332)
83 2jjx_A Uridylate kinase, UMP k 99.7 2.8E-17 9.5E-22 163.7 10.2 111 1-128 135-247 (255)
84 3d2m_A Putative acetylglutamat 99.7 1.8E-16 6.2E-21 170.9 14.2 132 1-144 187-323 (456)
85 3l86_A Acetylglutamate kinase; 99.6 2.8E-16 9.4E-21 157.6 10.7 96 1-108 174-271 (279)
86 3zzh_A Acetylglutamate kinase; 99.6 3.6E-16 1.2E-20 158.6 9.8 115 1-128 182-302 (307)
87 3c1m_A Probable aspartokinase; 99.6 1.9E-15 6.6E-20 163.1 9.0 110 1-128 187-301 (473)
88 3s6g_A N-acetylglutamate kinas 99.6 4.2E-15 1.4E-19 158.7 10.3 117 1-128 192-311 (460)
89 4ab7_A Protein Arg5,6, mitocho 99.6 6.9E-15 2.4E-19 156.6 10.2 115 1-128 182-302 (464)
90 2cdq_A Aspartokinase; aspartat 99.5 6.3E-15 2.1E-19 159.7 9.3 111 1-128 209-324 (510)
91 3tvi_A Aspartokinase; structur 99.5 9.1E-15 3.1E-19 155.9 8.1 110 1-128 165-279 (446)
92 3ab4_A Aspartokinase; aspartat 99.5 1.1E-14 3.9E-19 155.0 8.6 110 1-128 130-244 (421)
93 3s6k_A Acetylglutamate kinase; 99.5 1E-14 3.4E-19 155.9 6.9 118 1-128 195-314 (467)
94 3l76_A Aspartokinase; alloster 99.5 2E-14 6.9E-19 159.1 8.9 109 1-128 130-245 (600)
95 2j0w_A Lysine-sensitive aspart 99.5 2.5E-14 8.6E-19 153.1 8.5 107 1-128 178-292 (449)
96 4gic_A HDH, histidinol dehydro 97.3 0.2 6.8E-06 51.9 28.7 279 209-536 94-400 (423)
97 1kae_A HDH, histidinol dehydro 94.5 5.3 0.00018 41.5 28.0 258 237-537 113-394 (434)
98 3fgh_A Transcription factor A, 37.9 68 0.0023 23.5 5.7 36 144-179 29-64 (67)
99 3ewi_A N-acylneuraminate cytid 37.8 55 0.0019 29.0 6.1 57 38-117 11-69 (168)
100 2fiu_A Conserved hypothetical 36.3 69 0.0024 25.8 6.0 69 386-465 2-76 (99)
101 1k1e_A Deoxy-D-mannose-octulos 30.4 62 0.0021 28.5 5.3 59 38-117 10-70 (180)
102 2eqz_A High mobility group pro 29.5 99 0.0034 23.9 5.7 37 143-179 47-83 (86)
103 3v42_A Folliculin; tumor suppr 28.7 68 0.0023 30.3 5.2 70 263-342 21-90 (226)
104 2p9j_A Hypothetical protein AQ 25.9 89 0.0031 26.6 5.4 28 90-117 44-71 (162)
105 1hry_A Human SRY; DNA, DNA-bin 25.3 1.1E+02 0.0039 22.7 5.2 31 145-175 36-66 (76)
106 1v63_A Nucleolar transcription 25.2 1.3E+02 0.0044 24.3 5.7 38 143-180 36-73 (101)
107 1gt0_D Transcription factor SO 23.3 1E+02 0.0035 23.3 4.6 31 145-175 34-64 (80)
108 3u2b_C Transcription factor SO 23.2 1.3E+02 0.0044 22.6 5.2 32 144-175 33-64 (79)
109 2crj_A SWI/SNF-related matrix- 22.6 1.1E+02 0.0037 24.1 4.7 36 144-179 38-73 (92)
110 1v64_A Nucleolar transcription 22.0 1.5E+02 0.0053 24.1 5.7 37 144-180 44-80 (108)
111 2co9_A Thymus high mobility gr 21.5 1.6E+02 0.0056 23.5 5.7 36 144-179 48-83 (102)
112 3rag_A Uncharacterized protein 21.5 3.4E+02 0.012 25.7 8.7 76 88-170 28-129 (242)
113 2e6o_A HMG box-containing prot 21.0 1.5E+02 0.0051 22.9 5.2 31 144-174 48-78 (87)
114 4a3n_A Transcription factor SO 20.7 1.1E+02 0.0037 22.4 4.2 31 144-174 33-63 (71)
115 3f27_D Transcription factor SO 20.7 1.5E+02 0.0053 22.4 5.2 32 144-175 37-68 (83)
No 1
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=100.00 E-value=4.1e-88 Score=723.88 Aligned_cols=409 Identities=34% Similarity=0.616 Sum_probs=371.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhCChhHHHHHH
Q 008588 134 KQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLA 213 (560)
Q Consensus 134 ~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~~~~ 213 (560)
.-+++++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|+++++++|+.++..+++.....|+..++
T Consensus 12 ~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~ 91 (427)
T 1o20_A 12 HMDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMI 91 (427)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999998887888877777777778999999
Q ss_pred HHHHHHhcccccccccccccccCCCeeEEEeecceEEEEEEcCCChhhHHHHHHHHHHhCCeEEeeCCcchHHHHHHHHH
Q 008588 214 KSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHK 293 (560)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGNtvVlKPse~tp~t~~~l~~ 293 (560)
+.+++|+++.+..+...+....+.+...+++|+|+|||++|+||+|.+++++++|||++||+||+||||.||+|+.++++
T Consensus 92 ~~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p~~~~~~~~~~ALaaGNtVVlKps~~tp~t~~~l~~ 171 (427)
T 1o20_A 92 KACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVS 171 (427)
T ss_dssp HHHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHhcccccCccccccccCCCceeEEEeecceeEEEEecCChHHHHHHHHHHHHcCCEEEEECCHhHHHHHHHHHH
Confidence 99999987665445433211112244567889999999999999877888999999999999999999999999999999
Q ss_pred HHHHhcccc-cCcCcEEeecC-C-chhhHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCccceEEEcCCCCHHH
Q 008588 294 VITSAIPDT-VGEKLIGLVTS-R-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDV 370 (560)
Q Consensus 294 l~~~al~~a-lP~gvv~vv~~-~-~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~~~~~lElGGk~p~iV~~dADld~ 370 (560)
++.++|.++ +|+|++|+|++ + ++++++|..||+||+|+||||+++||.|++++.||++||||||||+||++|||+|.
T Consensus 172 l~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a~~~v~lELGGk~p~iV~~dADl~~ 251 (427)
T 1o20_A 172 AIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKK 251 (427)
T ss_dssp HHHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHH
T ss_pred HHHHHHHHcCCCcccEEEecCCChHHHHHHHhCCCCccEEEeCCChHHHHHHHHhcCCCEEEecCCCceEEEeCCCCHHH
Confidence 999988888 99999999996 4 46789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcccccceEEEeCccCCcchHHHHHHHHHhcCCeEecCcccccccc-C--CCCCcccccccCceEEE
Q 008588 371 AKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-I--PETRLFHHEYNSMVCTV 447 (560)
Q Consensus 371 Aa~~iv~~~f~n~g~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~~~~p-v--~~~~~~~eE~FGPVl~v 447 (560)
|++.+++++|.|+|+|+|++|+|||+++| |+|+++|+++++++++.+.|+++..+++| | +++++++||+||||++|
T Consensus 252 Aa~~i~~~~f~n~G~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~~~~gg~~~~~~~Ptl~~~~~~i~~eEiFGPVl~v 330 (427)
T 1o20_A 252 AVPVIINAKTQRPGTCNAAEKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAI 330 (427)
T ss_dssp HHHHHHHHHHSCTTSTTSEEEEEEEHHHH-HHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEE
T ss_pred HHHHHHHHhccCCCCCCCccEEEEehhhH-HHHHHHHHHHHHHcCCeeecChhhhhhCCcccCCCcchhhcccccceEEE
Confidence 99999999999999999999999999999 69999999999999988877765445668 5 46889999999999999
Q ss_pred EEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchh
Q 008588 448 EIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVE 527 (560)
Q Consensus 448 ~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~ 527 (560)
++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+..||||+++||+|.|+.+++|++|++
T Consensus 331 ~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~pfGg~~~SG~g~~~~~~~g~~gl~ 410 (427)
T 1o20_A 331 KVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLR 410 (427)
T ss_dssp EEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTG
T ss_pred EEECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHhCCccEEEECCCCccCCCCCCCCcccccccCCcccCCChHHHH
Confidence 99999999999999999999999999999999999999999999999977666778999999999987766678999999
Q ss_pred cceEEEEEEEcCceee
Q 008588 528 GLLTTRWILRGNGHVV 543 (560)
Q Consensus 528 ~ft~~K~v~~~~~~~~ 543 (560)
+||+.|+|+++.+++|
T Consensus 411 ~~~~~k~v~~~~~~~~ 426 (427)
T 1o20_A 411 ELTTYKFVVLGEYHVR 426 (427)
T ss_dssp GGEEEEEEEECSSCCC
T ss_pred HHhceEEEEECCCccC
Confidence 9999999999998887
No 2
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=2.3e-86 Score=719.55 Aligned_cols=401 Identities=16% Similarity=0.183 Sum_probs=349.0
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ ++||++|+++|++||+.|+++|..+|.++|++++++|++|.++|++++++|++++.
T Consensus 26 v~nP~tg~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 98 (490)
T 2wme_A 26 TINPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPL- 98 (490)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred eeCCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 35678899999988887 99999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++. ..++...++.+++++++.+ ..+...+. ..+...+++|+|+|||++|+|| ||. +++++++|
T Consensus 99 ---~ea~-------~~~v~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~a~ 165 (490)
T 2wme_A 99 ---AETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAP 165 (490)
T ss_dssp ---HHHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHHH-------HHHHHHHHHHHHHHHhccccccCccccc---cCCcceeEEecceeEEEEeccccCcchhhhhhHHH
Confidence 1221 1357778888888886554 23433332 2355678899999999999998 795 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+||||.||+|+.++++++++ + +|+|+||+|+| +.++++.|..||+||+|+||||+++|++|++.+
T Consensus 166 ALaaGNtVVlKPse~tp~ta~~l~~l~~e----aGlP~gv~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~~ 241 (490)
T 2wme_A 166 ALAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASA 241 (490)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCeEEEECCcCCHHHHHHHHHHHHH----hCCCCCcEEEEeCChHHHHHHHHhCCCCCEEEEECChHHHHHHHHhh
Confidence 99999999999999999999999999987 6 99999999996 678899999999999999999999999887643
Q ss_pred ----CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC-----
Q 008588 347 ----KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV----- 416 (560)
Q Consensus 347 ----~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~----- 416 (560)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 242 a~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~l~vGdp~~ 320 (490)
T 2wme_A 242 SSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQD 320 (490)
T ss_dssp HHHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTS
T ss_pred hccCCceEEEEcCCcCeEEEccCccHHHHHHHHHHHHhccCCCcCCCceeeccchhHH-HHHHHHHHHHHHhCcCCCCcc
Confidence 49999999999999999999999999999999999987 999999999999999 6999999999987532
Q ss_pred -----------------------------eE-ecCccc------cccc--c-C-----CCCCcccccccCceEEEEEeCC
Q 008588 417 -----------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 452 (560)
Q Consensus 417 -----------------------------~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~ 452 (560)
++ +||.+. .++| | | ++|++++||+||||++|++|+|
T Consensus 321 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 400 (490)
T 2wme_A 321 ENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDD 400 (490)
T ss_dssp TTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESC
T ss_pred ccCccCCcCCHHHHHHHHHHHHHHHhcCCEEEECCcccCcccccCCCccCCEEEEcCCCCChhhhccccCCEEEEEEeCC
Confidence 22 244321 2333 5 2 3689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEE
Q 008588 453 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 532 (560)
Q Consensus 453 ~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~ 532 (560)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.|.||+|+ ++|++||++||+.
T Consensus 401 ~deAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PFGG~k~SG~Gr----e~G~~gl~~ft~~ 476 (490)
T 2wme_A 401 EDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGR----ENGLTTLAHYTRI 476 (490)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEESC----BSHHHHHHTTEEE
T ss_pred HHHHHHHHhcCCCCCeEEEEcCCHHHHHHHHHHCCeeEEEEeCCCCCCCCCCcccccccccCc----hhHHHHHHHhhce
Confidence 999999999999999999999999999999999999999999877777789999999999873 5799999999999
Q ss_pred EEEEEcCce
Q 008588 533 RWILRGNGH 541 (560)
Q Consensus 533 K~v~~~~~~ 541 (560)
|+|+++.+.
T Consensus 477 K~v~i~~g~ 485 (490)
T 2wme_A 477 KSVQVELGD 485 (490)
T ss_dssp EEEEEECSC
T ss_pred eEEEEECCC
Confidence 999987753
No 3
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=100.00 E-value=2e-86 Score=714.20 Aligned_cols=408 Identities=36% Similarity=0.618 Sum_probs=350.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhCChhHHHHHHH
Q 008588 135 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 214 (560)
Q Consensus 135 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~~~~~ 214 (560)
.+|+++++++|++||+.|+++|..+|.++|++++++|++|.++|++++++|++++++.|+.++..+++..+..++..+++
T Consensus 25 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~ 104 (444)
T 4ghk_A 25 DQYMTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVE 104 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999988777656667777777777789999999
Q ss_pred HHHHHhcccccccccccccccCCCeeEEEeecceEEEEEEcCCChhhHHHHHHHHHHhCCeEEeeCCcchHHHHHHHHHH
Q 008588 215 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 294 (560)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGNtvVlKPse~tp~t~~~l~~l 294 (560)
.+++++++.++.+...+......+...+++|+|+|||++|+||||++++++++|||++||+||+||||.||+|+.+++++
T Consensus 105 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~nP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 184 (444)
T 4ghk_A 105 GLRQVATLPDPIGEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKL 184 (444)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECSEEEEECCSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhhccccCccCCcccCCCCccceEEEeccEEEEEEeCCCcHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHH
Confidence 99999877665555443211123456788999999999999999977789999999999999999999999999999999
Q ss_pred HHHhcccc-cCcCcEEeecC-Cc-hhhHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCccceEEEcCCCCHHHH
Q 008588 295 ITSAIPDT-VGEKLIGLVTS-RE-EIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 371 (560)
Q Consensus 295 ~~~al~~a-lP~gvv~vv~~-~~-~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~~~~~lElGGk~p~iV~~dADld~A 371 (560)
+.+++.++ +|+|+||+|++ +. +++++|..||+||+|+||||+.+|+.|++++.||++||||||||+||++|||||.|
T Consensus 185 ~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a~~pv~lELGGk~p~IV~~dADl~~A 264 (444)
T 4ghk_A 185 IGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEARVPMIKHLDGICHVYVDDRASVTKA 264 (444)
T ss_dssp HHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCCSCBCCCCCCCCEEEECTTCCHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCHHHHHHHHhcCCCccEEEEECcHHHHHHHHHhCCCCEEEEcCCcCeEEECCCCCHHHH
Confidence 98877788 99999999995 54 58999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccceEEEeCccCCcchHHHHHHHHHhcCCeEecCcccccccc-------C-CCCCcccccccCc
Q 008588 372 KNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-------I-PETRLFHHEYNSM 443 (560)
Q Consensus 372 a~~iv~~~f~n~g~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~~~~p-------v-~~~~~~~eE~FGP 443 (560)
++.+++|+|.|+|+|+|++|+|||+++| |+|+++|+++++++++.+.|++....++. + ++|++++||+|||
T Consensus 265 a~~i~~~~~~n~G~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~g~p~~~~~i~~a~~G~~~~~~~~~~~eEiFGP 343 (444)
T 4ghk_A 265 LTVCDNAKTHRYGTCNTMETLLVARGIA-PAVLSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAP 343 (444)
T ss_dssp HHHCC---------CCCCCEEEEEGGGH-HHHHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCCEECCSGGGTCC---C
T ss_pred HHHHHHHhcCCCcccCcCceEEEeHHHH-HHHHHHHHHHHHHcCCeecCCHHHHHHHHhcccCcccCCCchhhhccccCc
Confidence 9999999999988999999999999999 69999999999998775555543322221 1 4689999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccc
Q 008588 444 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGP 523 (560)
Q Consensus 444 Vl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~ 523 (560)
|++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.+.+..|||+|++||+|+++.+++|+
T Consensus 344 Vl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~pfGg~~~sG~g~~~~~~~G~ 423 (444)
T 4ghk_A 344 VLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGP 423 (444)
T ss_dssp EEEEEEESSHHHHHHHHHHHSCSSEEEEECSBHHHHHHHHHHCCSSEEEEEECGGGCSTTTTTCSCCSEEECCSSSCCEE
T ss_pred eEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCcceEEEcCCCccCCCCCcCCcccccccCCcccCCCh
Confidence 99999999999999999999999999999999999999999999999999998777788999999999998776678899
Q ss_pred cchhcceEEEEEEEcCceee
Q 008588 524 VGVEGLLTTRWILRGNGHVV 543 (560)
Q Consensus 524 ~gl~~ft~~K~v~~~~~~~~ 543 (560)
+|+++||+.|+|+++.+++|
T Consensus 424 ~gl~~~t~~K~v~~~~~~~~ 443 (444)
T 4ghk_A 424 VGLEGLTSLKYVVLGHGEGR 443 (444)
T ss_dssp ECGGGGEEEEEEEEEEEECC
T ss_pred hHHHhhceEEEEEECCCccc
Confidence 99999999999999999887
No 4
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=100.00 E-value=2.1e-83 Score=693.65 Aligned_cols=420 Identities=43% Similarity=0.714 Sum_probs=328.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhC-ChhHHHHHH
Q 008588 135 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL-KPGKISSLA 213 (560)
Q Consensus 135 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~ev~~~~ 213 (560)
-..+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.++|+.++...++.. +..++++++
T Consensus 13 ~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~a 92 (468)
T 1vlu_A 13 MSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVML 92 (468)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999988766667776567877 788999999
Q ss_pred HHHHHHhcccccccccccccccCCCeeEEEeecceEEEEEEcCCChhhHHHHHHHHHHhCCeEEeeCCcchHHHHHHHHH
Q 008588 214 KSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHK 293 (560)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGNtvVlKPse~tp~t~~~l~~ 293 (560)
+.++.+....++.|+..+....+.+...+++++|+|||++|+||||.+++++++|||++||+||+||||.||+|+.++++
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwNP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~ 172 (468)
T 1vlu_A 93 QGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVNTFREMAK 172 (468)
T ss_dssp HHHHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSCTHHHHHHHHHHHHHTCEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEeccChHHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHHH
Confidence 99998875554445433211111245568899999999999999986678999999999999999999999999999999
Q ss_pred HHHHhccc----c-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCccceEEEcCCCCH
Q 008588 294 VITSAIPD----T-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANL 368 (560)
Q Consensus 294 l~~~al~~----a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~~~~~lElGGk~p~iV~~dADl 368 (560)
+++++|.+ + +|+|+||+|+++++++++|..||+||+|+||||+++||.|++++.||+++|||||||+||++|||+
T Consensus 173 l~~~aL~e~~~~aGlP~gvv~vv~~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a~kpv~lElGGk~p~iV~~dADl 252 (468)
T 1vlu_A 173 IVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADL 252 (468)
T ss_dssp HHHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTCCSCBTTBCSCCEEEEECTTCCH
T ss_pred HHHHHHHhhchhcCCCCCcEEEECCHHHHHHHHhhCCCcCEEEEECCHHHHHHHHHhcCCCEEeecCCccceEECCCCCH
Confidence 99988888 8 999999999943368899999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcccccceEEEeCccCCcchHHHHHHHHHhcCCeEecCcccc---------------cccc--C-
Q 008588 369 DVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRAS---------------KLLQ--I- 430 (560)
Q Consensus 369 d~Aa~~iv~~~f~n~g~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~---------------~~~p--v- 430 (560)
|.|++.+++|+|.|+|+|+|++|+|||+++ | +|+++|+++++++++.+.|++... ++.| +
T Consensus 253 ~~Aa~~i~~~~~~n~G~C~a~~rvlV~~~i-d-~f~~~l~~~~~~~~v~~~Gdp~~~~~~i~~a~~~~~gG~g~~Ptvlv 330 (468)
T 1vlu_A 253 IKAKRISLDAKTNYPAGCNAMETLLINPKF-S-KWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGKLTEAIQCKTVD 330 (468)
T ss_dssp HHHHHHHHHTTCC----CCCCEEEEECTTS-T-THHHHHHHHHHHHCCCBEECHHHHHHHHHHHHHHTCCCHHHHTTBC-
T ss_pred HHHHHHHHHHhcCCCCcCCcCcEEEEECCH-H-HHHHHHHHHHHhcCCeecCCHHHhcccccccceeeccCCCCCCceee
Confidence 999999999999998899999999999999 8 999999999999876444443211 1225 2
Q ss_pred -CCCCcccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCcc
Q 008588 431 -PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGA 509 (560)
Q Consensus 431 -~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~ 509 (560)
++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++...+..|||+|+
T Consensus 331 ~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~pfG~Gg 410 (468)
T 1vlu_A 331 ADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKFMKGVDSSGVYWNASTRFADGFRYGFGA 410 (468)
T ss_dssp ------------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHHHHHHHHCCCSEEEESSCGGGCC--------
T ss_pred CCCchhhhcCccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCCCCCC
Confidence 3688999999999999999999999999999999999999999999999999999999999999987667778999888
Q ss_pred ceeccccCcccccccchhcceEEEEEEEcCceeeeCC----CCceeeeccc
Q 008588 510 EVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGD----QGVVYTHKNL 556 (560)
Q Consensus 510 ~sG~~~~~~~~~G~~gl~~ft~~K~v~~~~~~~~~~~----~~~~~~~~~~ 556 (560)
++|++.|+.++.|++|+++|++.|+|+++.+++|+.- -.-.|+|+.+
T Consensus 411 ~~G~~~SG~g~~G~~gl~~f~~~K~v~~~~~~~r~py~~~~~~~~~~~~~~ 461 (468)
T 1vlu_A 411 EVGISTSKIHARGPVGLDGLVSYQYQIRGDGQVASDYLGAGGNKAFVHKDL 461 (468)
T ss_dssp --------------CCSGGGEEEEEEEECSSCCSCCC--------------
T ss_pred CcceecCCCCCCcchHHHHhcceEEEEECCCCcCccccccccccceecCCC
Confidence 8898877665459999999999999999988888211 1256777765
No 5
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=100.00 E-value=4e-83 Score=696.95 Aligned_cols=401 Identities=17% Similarity=0.187 Sum_probs=349.5
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+.|++++..+|.++|++++++|++|.++|++++++|++++.
T Consensus 52 v~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 124 (504)
T 3ek1_A 52 VTNPADGSVIGTVPSLS------VATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPL- 124 (504)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 45678899999988777 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.+++++.+.+. .+...+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 125 ---~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 191 (504)
T 3ek1_A 125 ---AEA--------RGEVLYAASFIEWFAEEAKRVYGDTIPAP--QNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAP 191 (504)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--STTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccc--cccccceeeccCceEEEEECCCcchHHHHHHHHHH
Confidence 122 24677888888988865543 23332211 1345678899999999999998 795 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+|||+.||+|+.++++++.+ + +|+|+||+|++ +.++++.|..||+||+|+||||+++||.|++++
T Consensus 192 ALaaGN~VVlKPs~~tp~t~~~l~~l~~e----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~a 267 (504)
T 3ek1_A 192 ALAAGCTMIVRPADLTPLTALALGVLAEK----AGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQC 267 (504)
T ss_dssp HHHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTTEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCcChHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhh
Confidence 99999999999999999999999999987 6 99999999995 667888888999999999999999999999887
Q ss_pred C---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC------
Q 008588 347 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 416 (560)
Q Consensus 347 ~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~------ 416 (560)
+ ||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 268 a~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 346 (504)
T 3ek1_A 268 APTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVY-DKFAEKLAAKVKELKVGNGTEP 346 (504)
T ss_dssp GGGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hhhcCCeEecCCCCCeeEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEehhHH-HHHHHHHHHHHhhcccCCCccc
Confidence 4 9999999999999999999999999999999999987 999999999999999 6999999999987521
Q ss_pred ----------------------------eE-ecCccccccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHHH
Q 008588 417 ----------------------------GL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 459 (560)
Q Consensus 417 ----------------------------~~-~g~~~~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 459 (560)
++ +|+.+..++| | | ++|++++||+||||++|++|+|+||||++
T Consensus 347 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 426 (504)
T 3ek1_A 347 GVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQ 426 (504)
T ss_dssp TCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHH
T ss_pred cCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCeEEecCCCcChhhcccccCcEEEEEEeCCHHHHHHH
Confidence 22 2443223343 5 3 46899999999999999999999999999
Q ss_pred HHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEEEEEcC
Q 008588 460 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 539 (560)
Q Consensus 460 aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~~ 539 (560)
+|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+|+ ++|++|+++||+.|+|++++
T Consensus 427 aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~~t~~K~v~~~~ 502 (504)
T 3ek1_A 427 ANDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLGR----EGSKYGIEEYLETKYICSAY 502 (504)
T ss_dssp HHCSSCCSEEEEECCBHHHHHHHHHHSCCSEEEESCSCCCCSSSCBCCSGGGEESC----BSTTTSGGGGEEEEEEEEEC
T ss_pred HhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCcCCcCcCcCCC----CCcHHHHHHhhceEEEEEec
Confidence 99999999999999999999999999999999999987667789999999999873 57999999999999999876
Q ss_pred ce
Q 008588 540 GH 541 (560)
Q Consensus 540 ~~ 541 (560)
++
T Consensus 503 g~ 504 (504)
T 3ek1_A 503 KR 504 (504)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 6
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.5e-82 Score=684.47 Aligned_cols=437 Identities=47% Similarity=0.764 Sum_probs=345.2
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
..++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++.++
T Consensus 11 ~~~P~tg~~~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~- 83 (463)
T 2h5g_A 11 VDLGTENLYFQSMVKPA------GPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAE- 83 (463)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-
T ss_pred CcCCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc-
Confidence 34567888899888777 78999999999999999999999999999999999999999999999998886443
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhccc-ccccccccccccCCCeeEEEeecceEEEEEEcCCChhhHHHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADME-EPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAI 270 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~AL 270 (560)
.|+.....+++..+..|+..+++.++++++.. +..+...+......+...+++|+|+|||++|+||+|....++++|||
T Consensus 84 ~~~Gk~~~~rl~~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~nP~n~p~~~a~AL 163 (463)
T 2h5g_A 84 GRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAI 163 (463)
T ss_dssp TTSCHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTSTTCEEEEEEEETTEEEEEEEEECCEEEEEESSCTTHHHHHHHHHH
T ss_pred ccCCCchhhhhhhhHHHHHHHHHHHHHHHHhhHhhcCcccccccCCCCceeEEEEEcCceEEEEecCCcHHHHHHHHHHH
Confidence 22112222333345578999999999998543 44454332111113445688999999999999988854348999999
Q ss_pred HhCCeEEeeCCcchHHHHHHHHHHHHHhcccccCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHhcC-CC
Q 008588 271 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK-IP 349 (560)
Q Consensus 271 aaGNtvVlKPse~tp~t~~~l~~l~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~-~~ 349 (560)
++||+||+||||.||+|+.+++++++++|.++-|+|+||+|+++.++++.|..||+||+|+||||+++||.|+++++ ||
T Consensus 164 aaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aal~p 243 (463)
T 2h5g_A 164 ASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIP 243 (463)
T ss_dssp HHTCEEEEECCGGGHHHHHHHHHHHHHHHHTTTCGGGEEECCTTCCC-------CCCSEEEEESCHHHHHHHHHHCSSSC
T ss_pred HcCCEEEEECCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999864320189999999986667888889999999999999999999999887 99
Q ss_pred EEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCCcccccceEEEeCccCCcchHHHHHHHHHhcCCeEecCcccc--cc
Q 008588 350 VLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRAS--KL 427 (560)
Q Consensus 350 ~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~--~~ 427 (560)
++||||||||+||++|||||.|++.+++|+|.|+|+|+|++|+|||+++||+.+++++++.+.+.|+++++|.... ++
T Consensus 244 v~lElGGk~p~iV~~dADl~~Aa~~i~~~~f~nGQ~C~a~~rvlV~~~i~d~p~~~~~i~~~~~~Ga~v~~G~~~~~~g~ 323 (463)
T 2h5g_A 244 VMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLT 323 (463)
T ss_dssp BCSCSCCCEEEEECTTCCTTTHHHHHHHHHHSCTTSTTSEEEEEEEGGGTTSHHHHHHHHHHHHTTCEEEECHHHHC---
T ss_pred EEEecCCcceEEEcCCCCHHHHHHHHHHHhccCCCccccCcEEEEeccccchHHHHHHHHHHHhCCCEEEeCCcccccCc
Confidence 9999999999999999999999999999999995599999999999999931478888888888888887654321 22
Q ss_pred ccC-CCCCcccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccC
Q 008588 428 LQI-PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFG 506 (560)
Q Consensus 428 ~pv-~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG 506 (560)
| + ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.+++++|++++++|+|+||++....+.+|||
T Consensus 324 ~-~~~~~~i~~eE~FgPvl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfG 402 (463)
T 2h5g_A 324 F-SPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRFG 402 (463)
T ss_dssp -------CCSSCCCCSSEEEEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTT
T ss_pred c-CCCCchHHhccccCceEEEEEeCCHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEeCCccCCCCCCCC
Confidence 2 3 4689999999999999999999999999999999999999999999999999999999999999987667789999
Q ss_pred CccceeccccCcccccccchhcceEEEEEEEcCceeee--CCC-Cceeeeccc
Q 008588 507 LGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQ-GVVYTHKNL 556 (560)
Q Consensus 507 ~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~~~~~~~--~~~-~~~~~~~~~ 556 (560)
|.++||+|+++.+.+|++|+++||+.|+|+++.+++|+ ++. .-.|+|+.+
T Consensus 403 G~k~SG~G~~r~~~~G~~gl~~ft~~K~v~~~~~~~r~~y~~~~~~~~~~~~~ 455 (463)
T 2h5g_A 403 LGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENL 455 (463)
T ss_dssp SSCCSCEECCSSSCCEECCGGGGEEEEEEEECSSCCGGGGSTTSSCCCCCEEC
T ss_pred CCccCcCCCCcccCCCHHHHHHhceeEEEEECCCcccCCccccchhhcccccC
Confidence 99999998655555799999999999999999999983 112 247777755
No 7
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=100.00 E-value=1.1e-82 Score=691.15 Aligned_cols=398 Identities=15% Similarity=0.160 Sum_probs=347.7
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 32 v~~P~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 104 (484)
T 3ifg_A 32 VFDPATGESLGTVPKMG------AAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPL- 104 (484)
T ss_dssp EECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-
Confidence 34577899999988887 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.+++++...+ ..+...+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 105 ---~~a--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 171 (484)
T 3ifg_A 105 ---AEA--------KGEIAYAASFIEWFAEEGKRVAGDTLPTP--DANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGP 171 (484)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--STTEEEEEEEEECSSEEEECCSSSTTHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHhhcCcccccc--CCCceeEEEecCCcEEEEECCCcChHHHHHHHHHH
Confidence 122 2578888999999886543 233332211 1356678899999999999998 785 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+|||+.||+|+.++++++.+ + +|+|+||+|++ +.++++.|..||+||+|+||||+++||.|++++
T Consensus 172 ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~~~a 247 (484)
T 3ifg_A 172 ALAAGCPIVVKPAESTPFSALAMAFLAER----AGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQS 247 (484)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHT
T ss_pred HHHcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHh
Confidence 99999999999999999999999999987 6 99999999996 667888888999999999999999999999887
Q ss_pred C---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC------
Q 008588 347 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 416 (560)
Q Consensus 347 ~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~------ 416 (560)
+ ||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 248 a~~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 326 (484)
T 3ifg_A 248 APTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVY-DAFADKLAAAVSKLKVGRGTES 326 (484)
T ss_dssp GGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hccCCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCcccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 3 9999999999999999999999999999999999987 999999999999999 6999999999987531
Q ss_pred ----------------------------eE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHH
Q 008588 417 ----------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 457 (560)
Q Consensus 417 ----------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 457 (560)
++ +||.+. .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 327 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 406 (484)
T 3ifg_A 327 GATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELV 406 (484)
T ss_dssp TCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCceEcCEEEecCCCCChhhCCeeeCcEEEEEEeCCHHHHH
Confidence 22 244331 2333 5 3 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEEEEE
Q 008588 458 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 537 (560)
Q Consensus 458 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~ 537 (560)
+++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.++||+|+ ++|++|+++||+.|+|++
T Consensus 407 ~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~Gr----~~g~~gl~~~~~~k~v~~ 482 (484)
T 3ifg_A 407 RLANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLGR----EGSHYGIDDYVVIKYLCV 482 (484)
T ss_dssp HHHHCSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCEETTEECC----BSTTTTTGGGEEEEEEEE
T ss_pred HHHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCcCCC----CchHHHHHHhhceEEEEE
Confidence 9999999999999999999999999999999999999977667789999999999873 579999999999999986
Q ss_pred c
Q 008588 538 G 538 (560)
Q Consensus 538 ~ 538 (560)
.
T Consensus 483 ~ 483 (484)
T 3ifg_A 483 A 483 (484)
T ss_dssp E
T ss_pred e
Confidence 4
No 8
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=100.00 E-value=2.5e-82 Score=690.29 Aligned_cols=400 Identities=14% Similarity=0.139 Sum_probs=347.8
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 44 v~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 116 (498)
T 4f3x_A 44 ILNPRTGAGIIDLAEAS------HAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPI- 116 (498)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 34677899999988877 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.+++ ..|+...++.++++++..+. .+...+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 117 ---~ea~-------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 184 (498)
T 4f3x_A 117 ---NAVK-------NDELPAIIDCWRFFAGAVRNLHAPAAGEY--LPGHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAP 184 (498)
T ss_dssp ---HHHH-------HTHHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHHh-------HHHHHHHHHHHHHHHHHHHHhcCccccCC--cccccceEEEcCcceEEEECCCchHHHHHHHHHHH
Confidence 1221 24677888888888765432 23332211 2355678899999999999998 795 57899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccccCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 347 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~ 347 (560)
||++||+||+||||.||+|+.++++++.+ +||+|+||+|++ +.++++.|..||+||+|+||||+++|+.|+++|.
T Consensus 185 ALaaGNtVVlKPs~~tp~t~~~l~~l~~e----alP~gv~nvv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 260 (498)
T 4f3x_A 185 AIGGGNTVVFKPSEQTPLTALKLARLIAD----ILPEGVVNVITGRGETVGNALINHPKVGMVSITGDIATGKKVLAAAA 260 (498)
T ss_dssp HHHTTCEEEEECCTTCCHHHHHHHHHHHT----TSCTTSEEECCCCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHcCCeEEEECCcccHHHHHHHHHHHHH----hCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999999987 499999999996 6778888889999999999999999999998873
Q ss_pred ---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhc---------
Q 008588 348 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE--------- 414 (560)
Q Consensus 348 ---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~--------- 414 (560)
||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 261 ~~~k~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~d~~ 339 (498)
T 4f3x_A 261 KTVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIY-EKLVADLTSAVSTIRYNLDDDTE 339 (498)
T ss_dssp TTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHTTCCCSCSSGGG
T ss_pred hhCCceeecCCCCCcEEECCCCCHHHHHHHHHHHHHhcCCCCccCCceEEecHHHH-HHHHHHHHHHHHhcccCCCcccc
Confidence 9999999999999999999999999999999999987 999999999999999 69999999988754
Q ss_pred -------------------------CC-eE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHH
Q 008588 415 -------------------------GV-GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 457 (560)
Q Consensus 415 -------------------------~~-~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 457 (560)
|+ ++ +||.+. .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 340 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 419 (498)
T 4f3x_A 340 NEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAV 419 (498)
T ss_dssp CSSCCCSCHHHHHHHHHHHHHHHHSTTCEEEECCSBCCSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECTTSCHH
T ss_pred CccccCcCHHHHHHHHHHHHHHHHCCCCEEEECCccCCCCCcEECCEEeecCCCCChhhCCceeCcEEEEEEeCCHHHHH
Confidence 22 33 244321 2333 5 2 368999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEEEEE
Q 008588 458 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 537 (560)
Q Consensus 458 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~ 537 (560)
+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+|+ ++|++|+++||+.|+|++
T Consensus 420 ~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~~l~~~t~~k~v~~ 495 (498)
T 4f3x_A 420 AWANDSDYGLASSVWTKDISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYGK----DMSVYALEDYTAVRHIMI 495 (498)
T ss_dssp HHHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCSGGGEECC----BSHHHHHHHTEEEEEEEE
T ss_pred HHHhcCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCCcCc----cchHHHHHHhhceEEEEE
Confidence 9999999999999999999999999999999999999987777889999999999873 579999999999999987
Q ss_pred cC
Q 008588 538 GN 539 (560)
Q Consensus 538 ~~ 539 (560)
+.
T Consensus 496 ~~ 497 (498)
T 4f3x_A 496 NH 497 (498)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 9
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=100.00 E-value=3.2e-82 Score=690.46 Aligned_cols=400 Identities=21% Similarity=0.224 Sum_probs=345.4
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+.|+++|..+|.++|++++++|++|.++|++++++|++++..
T Consensus 31 v~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 104 (505)
T 3prl_A 31 ISAPASGVALGSIPALS------QEEVNDAIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKK 104 (505)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHH
T ss_pred EECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34678899999988777 899999999999999999999999999999999999999999999999887765431
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCC---CeeEEEeecceEEEEEEcCC-Chh-hHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELAD---GLILEKTSCPLGVLLIVFES-RPD-ALVQI 265 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~ 265 (560)
++ ..|+..+++.++++++..+ ..+...+...... +...+++|+|+|||++|+|| ||. +.+++
T Consensus 105 ----ea--------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~ 172 (505)
T 3prl_A 105 ----SA--------IGEVSRTADIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAK 172 (505)
T ss_dssp ----HH--------HHHHHHHHHHHHHHHHHHHTCCEEEEEGGGSTTTCSSEEEEEEEEECSEEEEEECSSSTTHHHHHH
T ss_pred ----HH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccccccCCceeEEEEcCCcEEEEECCCccHHHHHHHH
Confidence 22 2366777777777765432 2233222111011 45678899999999999998 785 67899
Q ss_pred HHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHH
Q 008588 266 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIK 343 (560)
Q Consensus 266 ~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~ 343 (560)
++|||++||+||+||||.||+|+.+|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|+
T Consensus 173 ~a~ALaaGN~VVlKpse~tp~ta~~l~~ll~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~ 248 (505)
T 3prl_A 173 IAPALVTGNTVVFKPATQGSLSGIKMVEALAD----AGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERIS 248 (505)
T ss_dssp HHHHHHTTCEEEEEECSTTHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHTCTTCCEEEEESCHHHHHHHH
T ss_pred HHHHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999987 6 99999999997 677888898999999999999999999999
Q ss_pred HhcC-CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC------
Q 008588 344 ESTK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------ 415 (560)
Q Consensus 344 ~~a~-~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~------ 415 (560)
++|+ ||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 249 ~~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~ 327 (505)
T 3prl_A 249 EKAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVA-DQLVANIKELVEQLTVGSPED 327 (505)
T ss_dssp HHCCSSCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTT
T ss_pred HHccCCcEEEECCCCCCCccCCCCCHHHHHHHHHHHHHhcCCCccccCceEEEeHHHH-HHHHHHHHHHHHhcccCCCCC
Confidence 9886 9999999999999999999999999999999999987 999999999999999 699999999988752
Q ss_pred ---------------------------CeE-ecCccccccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHHH
Q 008588 416 ---------------------------VGL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 459 (560)
Q Consensus 416 ---------------------------~~~-~g~~~~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 459 (560)
+++ +|+.+ .++| | | ++|++++||+||||++|++|+|+||||++
T Consensus 328 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~-~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~~~deAi~~ 406 (505)
T 3prl_A 328 DADITPVIDEKSAAFIQGLIDDALENGATLLSGNKR-QGNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISL 406 (505)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCE-ETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHH
T ss_pred cCcCCcccCHHHHHHHHHHHHHHHHCCCEEEecCCC-CCceeCCeEeecCCCCChhhcCCccCcEEEEEEeCCHHHHHHH
Confidence 122 24432 2333 5 2 36899999999999999999999999999
Q ss_pred HHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcC-cCCCCccCCccceeccccCcccccccchhcceEEEEEEEc
Q 008588 460 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTR-FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 538 (560)
Q Consensus 460 aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~-~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~ 538 (560)
+|+++|||++||||+|.++++++++++++|+|+||+++. ..+.+||||.++||+|+ ++|.+|+++||+.|+|+++
T Consensus 407 aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~PFGG~k~SG~Gr----~~g~~~~~~f~~~k~v~~~ 482 (505)
T 3prl_A 407 SNQSDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLGV----QGIKPSLLSMTRERVTVLN 482 (505)
T ss_dssp HHTSSEESEEEEECSCHHHHHHHHHTSCSSEEEESSCCCSCSTTSCBCCEETTEESC----BSHHHHHHHTEEEEEEEEE
T ss_pred HhCCCCCeEEEEEcCCHHHHHHHHHHCCeeEEEEcCCCCCCCCCCCcCCcCcCCCCc----CccHHHHHHhhceEEEEEe
Confidence 999999999999999999999999999999999999765 35678999999999873 6799999999999999886
Q ss_pred C
Q 008588 539 N 539 (560)
Q Consensus 539 ~ 539 (560)
.
T Consensus 483 ~ 483 (505)
T 3prl_A 483 L 483 (505)
T ss_dssp C
T ss_pred C
Confidence 5
No 10
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=100.00 E-value=1.1e-82 Score=693.63 Aligned_cols=400 Identities=17% Similarity=0.158 Sum_probs=346.7
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 31 v~~P~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 103 (506)
T 3rh9_A 31 VYNPATGSVIAKVPSMP------EEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPW- 103 (506)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 34677899999988887 89999999999999999999999999999999999999999999999987765442
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEee-cceEEEEEEcCC-Chh-hHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTS-CPLGVLLIVFES-RPD-ALVQIAS 267 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~PlGVV~~I~p~-~P~-~~~~~~~ 267 (560)
.++ ..|+...++.++++++..+. .+...+. ..+...+++| +|+|||++|+|| ||. +++++++
T Consensus 104 ---~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 169 (506)
T 3rh9_A 104 ---KEA--------QGEVDYAAGFFDYCAKHISALDSHTIPE---KPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLS 169 (506)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHGGGGCCEECSC---CGGGCEEEEEEEECCSEEEECCSSSTTHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc---CCCceeeEeecccceEEEEECCCchHHHHHHHHHH
Confidence 222 24677778888887765432 2332221 1244567888 999999999998 785 6789999
Q ss_pred HHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHh
Q 008588 268 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 345 (560)
Q Consensus 268 ~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~ 345 (560)
|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|+++
T Consensus 170 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~vG~~i~~~ 245 (506)
T 3rh9_A 170 AALAAGCPSVIKPASETPLTMIAFFSVMDK----LDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVD 245 (506)
T ss_dssp HHHHHTCCEEEECCTTSCHHHHHHHHHHTT----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEEcCCccHHHHHHHHHHHHH----hCcChhhEEEEeCCChHHHHHHHhCCCCCEEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999986 7 99999999996 66788888889999999999999999999988
Q ss_pred cC---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC------
Q 008588 346 TK---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------ 415 (560)
Q Consensus 346 a~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~------ 415 (560)
|+ ||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 246 aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~ 324 (506)
T 3rh9_A 246 TAEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVA-DAFGQKLAERVNKMTVGDGMN 324 (506)
T ss_dssp TTTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSSSSCCEEEEETTTH-HHHHHHHHHHHHHCCBSCTTS
T ss_pred hhhcCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHHhCCCCcccCcEEEEcHHHH-HHHHHHHHHHHHhccCCCCcc
Confidence 84 9999999999999999999999999999999999987 999999999999999 699999999988752
Q ss_pred ----------------------------CeE-ecCccc---cccc--c-C-----CCCCcccccccCceEEEEEeCCHHH
Q 008588 416 ----------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 455 (560)
Q Consensus 416 ----------------------------~~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~de 455 (560)
+++ +||.+. .++| | | ++|++++||+||||++|++|+|+||
T Consensus 325 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 404 (506)
T 3rh9_A 325 DGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEE 404 (506)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHH
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCCCcEECCeEEccCCCCChhhcccccCcEEEEEEeCCHHH
Confidence 222 355431 3333 5 2 3689999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEEE
Q 008588 456 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 535 (560)
Q Consensus 456 Ai~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v 535 (560)
||+++|+++|||++||||+|.+++++|++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.|+|
T Consensus 405 Ai~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~K~v 480 (506)
T 3rh9_A 405 VIDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIG----REGGLEGLFEFVEAQTV 480 (506)
T ss_dssp HHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTEEEEEE
T ss_pred HHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCccCcCcCcCC----cCccHHHHHHhcceEEE
Confidence 99999999999999999999999999999999999999998877788999999999987 36799999999999999
Q ss_pred EEcCce
Q 008588 536 LRGNGH 541 (560)
Q Consensus 536 ~~~~~~ 541 (560)
+++.++
T Consensus 481 ~~~~~~ 486 (506)
T 3rh9_A 481 PRGFAE 486 (506)
T ss_dssp EEC---
T ss_pred EEcCcc
Confidence 987654
No 11
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=3.4e-82 Score=691.59 Aligned_cols=399 Identities=14% Similarity=0.142 Sum_probs=344.5
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 34 v~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 106 (517)
T 3r31_A 34 SIFPATGEMIAKLHAAT------PAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPI- 106 (517)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 34678899999988887 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-----ccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-----IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQ 264 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~ 264 (560)
.++ |+..+++.++++++..+. .+...+. ..+. .+++|+|+|||++|+|| ||. +.++
T Consensus 107 ---~ea----------ev~~~~~~~~~~a~~~~~~~~~~~g~~~~~---~~~~-~~~~~~P~GVV~~I~PwN~P~~~~~~ 169 (517)
T 3r31_A 107 ---QET----------IVADPTSGADAFEFFGGIAPSALNGDYIPL---GGDF-AYTKRVPLGVCVGIGAWNYPQQIACW 169 (517)
T ss_dssp ---HHH----------HHHSHHHHHHHHHHHHHHHHHHTCCCEEEC---SSSE-EEEEEEECSEEEEECCSSSHHHHHHH
T ss_pred ---HHH----------HHHHHHHHHHHHHHHhhhccccccCccccc---CCCc-ceEEEcCccEEEEECCCcchHHHHHH
Confidence 121 455566666666543322 2332221 2345 78899999999999998 795 6789
Q ss_pred HHHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHH
Q 008588 265 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIK 343 (560)
Q Consensus 265 ~~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~ 343 (560)
+++|||++||+||+|||+.||+|+.++++++.+ + ||+|+||+|+|+.++++.|..||+||+|+||||+++|+.|+
T Consensus 170 ~~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~e----aGlP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~ 245 (517)
T 3r31_A 170 KAAPALVAGNAMVFKPSENTPLGALKIAEILIE----AGLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVA 245 (517)
T ss_dssp HHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH----TTCCTTSEEECCCCTTHHHHHHTCTTEEEEEEESCHHHHHHHH
T ss_pred HHHHHHHcCCEEEEEcCcccHHHHHHHHHHHHH----hCcCcccEEEEECCHHHHHHHHhCCCcCEEeccCCHHHHHHHH
Confidence 999999999999999999999999999999987 7 99999999998767888888999999999999999999999
Q ss_pred Hhc---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC----
Q 008588 344 EST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 415 (560)
Q Consensus 344 ~~a---~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~---- 415 (560)
++| .||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 246 ~~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p 324 (517)
T 3r31_A 246 AAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAK-ARFLENLKRRTEAMILGDP 324 (517)
T ss_dssp HHHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTSCCHHHHTTCEEEEEEGGGH-HHHHHHHHHHHHHCCBCCT
T ss_pred HHhhcCCCcEEEEcCCcCeEEEecCCCHHHHHHHHHHHHhcCCCceeccCceEEEeHHHH-HHHHHHHHHHHHhccCCCC
Confidence 887 49999999999999999999999999999999999998 999999999999999 699999999988752
Q ss_pred ------------------------------CeE-ecCc-c----ccccc--c-C-----CCCCcccccccCceEEEEEeC
Q 008588 416 ------------------------------VGL-FGGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 451 (560)
Q Consensus 416 ------------------------------~~~-~g~~-~----~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~ 451 (560)
.++ +||. . ..++| | | ++|++++||+||||++|++|+
T Consensus 325 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 404 (517)
T 3r31_A 325 LDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFD 404 (517)
T ss_dssp TSTTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECTTSHHHHSCCSSSEEEEEEEC
T ss_pred CCcCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEECCccCcccCCCCceECCEEEecCCCCCccccceeeccEEEEEEeC
Confidence 222 3552 1 12333 5 3 468999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceE
Q 008588 452 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 531 (560)
Q Consensus 452 ~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~ 531 (560)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||+.+...+.+||||.++||+|+ ++|++|+++||+
T Consensus 405 ~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~ft~ 480 (517)
T 3r31_A 405 DEDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFGR----ENSAAALEHYSE 480 (517)
T ss_dssp CHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHSCCSEEEESSCCCCCTTSCBCCEETTEECC----BSTGGGGGGSEE
T ss_pred CHHHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCCCCc----CchHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999987777889999999999873 579999999999
Q ss_pred EEEEEEcCceee
Q 008588 532 TRWILRGNGHVV 543 (560)
Q Consensus 532 ~K~v~~~~~~~~ 543 (560)
.|+|+++.++.+
T Consensus 481 ~K~v~~~~~~~~ 492 (517)
T 3r31_A 481 LKTVYVSTGKVD 492 (517)
T ss_dssp EEEEEECCC---
T ss_pred eEEEEEcCCCCC
Confidence 999999877654
No 12
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=100.00 E-value=2.6e-82 Score=687.85 Aligned_cols=396 Identities=17% Similarity=0.167 Sum_probs=340.1
Q ss_pred hhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 008588 113 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 192 (560)
Q Consensus 113 ~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~ 192 (560)
.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 9 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 80 (484)
T 3ros_A 9 VNPYTNEAFASYDNPT------SKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLL-- 80 (484)
T ss_dssp EETTTTEEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred eCCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 3567888888877777 89999999999999999999999999999999999999999999999987775442
Q ss_pred chhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHHH
Q 008588 193 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 269 (560)
Q Consensus 193 g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 269 (560)
.++. .|+...++.++++++..+ ..+...+. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 81 --~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 147 (484)
T 3ros_A 81 --SESK--------EEVELCVSICNYYADHGPEMLKPTKLN---SDLGNAYYLKQSTGVIMACEPWNFPLYQVIRVFAPN 147 (484)
T ss_dssp --HHHH--------HHHHHHHHHHHHHHHHHHHHTSCEEEC---CTTSEEEEEEECCCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHH--------HHHHHHHHHHHHHHHHHHHhcCCeecc---CCCceeEEEecCCceEEEECCCchHHHHHHHHHHHH
Confidence 2222 245555556665554321 12222211 1244678899999999999998 785 678999999
Q ss_pred HHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 008588 270 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 347 (560)
Q Consensus 270 LaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~ 347 (560)
|++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| ++++++ |..||+||+|+||||+++||.|+++|+
T Consensus 148 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~-L~~~p~vd~I~fTGS~~~G~~i~~~aa 222 (484)
T 3ros_A 148 FIVGNPILLKHAHNVPGSAALTAKIIKR----AGAPEGSLINLYPSYDQLAD-IIADPRIQGVALTGSERGGSAVAEAAG 222 (484)
T ss_dssp HHHTCCEEEECCTTCHHHHHHHHHHHHH----HTCCTTSEEEECCCHHHHHH-HHTSTTEEEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCChHHHHH-HHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 9999999999999999999999999987 6 99999999996 566788 778999999999999999999998874
Q ss_pred ---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC--------
Q 008588 348 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 415 (560)
Q Consensus 348 ---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~-------- 415 (560)
||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 223 ~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 301 (484)
T 3ros_A 223 KNLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRY-DEVLHELKNVFSNLKAGDPLEAD 301 (484)
T ss_dssp HTTCEEEEECCCCCEEEECTTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred ccCCceEeecCCCCcceeCCCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999987 999999999999999 699999999988752
Q ss_pred --------------------------CeE-ecCcc--ccccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHH
Q 008588 416 --------------------------VGL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 458 (560)
Q Consensus 416 --------------------------~~~-~g~~~--~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 458 (560)
+++ +||.. ..++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 302 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 381 (484)
T 3ros_A 302 TTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQ 381 (484)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEEECCCCCCSSCCCCCEEEECCCTTSTTTTSCCCSSEEEEEEESSHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCcCCCCCceeCCeEeecCCCCCcccccccccceEEEEEcCCHHHHHH
Confidence 222 24432 12333 5 2 3689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEEEEEc
Q 008588 459 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 538 (560)
Q Consensus 459 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~ 538 (560)
++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+++
T Consensus 382 ~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~K~v~~~ 457 (484)
T 3ros_A 382 LANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVINGRWITSGELPFGGIKKSGYG----RELSGLGLMAFVNEHLVIDV 457 (484)
T ss_dssp HHHSSSCCSCEEEECSCHHHHHHHHHHSCSSCCEETSCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTCEEEEEEEC
T ss_pred HHhCCCCCcEEEEECCCHHHHHHHHHhCccceEEECCCCCCCCCCCcCCcCcccCC----cCchHHHHHHhheeEEEEEC
Confidence 99999999999999999999999999999999999998777788999999999987 36799999999999999886
Q ss_pred C
Q 008588 539 N 539 (560)
Q Consensus 539 ~ 539 (560)
.
T Consensus 458 ~ 458 (484)
T 3ros_A 458 T 458 (484)
T ss_dssp G
T ss_pred C
Confidence 4
No 13
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=100.00 E-value=1.3e-81 Score=685.83 Aligned_cols=399 Identities=15% Similarity=0.157 Sum_probs=348.0
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 40 v~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 112 (503)
T 1a4s_A 40 VFEPATGRVLCQMVPCG------AEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTI- 112 (503)
T ss_dssp EECTTTCCEEEEECCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 34677899899887777 89999999999999999999999999999999999999999999999887764432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.++++++..+. .++..+.. .+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 113 ---~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 178 (503)
T 1a4s_A 113 ---TEA--------EYDIDAAWQCIEYYAGLAPTLSGQHIQLP---GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAP 178 (503)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHGGGCCEEEEECG---GGCEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCceeEEEEecCceEEEECCCcchHHHHHHHHHH
Confidence 122 24678888888888765442 34332211 233567889999999999998 795 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+||||.||+|+.++++++++ + +|+|+||+|+| + ++++.|..||+||+|+||||+++||.|+++|
T Consensus 179 ALaaGN~VVlKps~~tp~ta~~l~~l~~~----aGlP~gvv~vv~g~~-~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~a 253 (503)
T 1a4s_A 179 ALACGNAVVFKPSPMTPVTGVILAEIFHE----AGVPVGLVNVVQGGA-ETGSLLCHHPNVAKVSFTGSVPTGKKVMEMS 253 (503)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCSH-HHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCcCeEEEEecCc-hHHHHHHhCCCcCEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999987 7 99999999996 6 7888888999999999999999999999887
Q ss_pred ---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC-------
Q 008588 347 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 415 (560)
Q Consensus 347 ---~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 415 (560)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 254 a~~~~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 332 (503)
T 1a4s_A 254 AKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIM-PQFLEEVVKRTKAIVVGDPLLT 332 (503)
T ss_dssp HTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hhcCCceEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHH-HHHHHHHHHHHHhcCCCCCccc
Confidence 59999999999999999999999999999999999987 999999999999999 699999999988652
Q ss_pred ---------------------------CeE-ecCccc--------cccc--c-C-----CCCCcccccccCceEEEEEeC
Q 008588 416 ---------------------------VGL-FGGPRA--------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 451 (560)
Q Consensus 416 ---------------------------~~~-~g~~~~--------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~ 451 (560)
+++ +||... .++| | | ++|++++||+||||++|++|+
T Consensus 333 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 412 (503)
T 1a4s_A 333 ETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFD 412 (503)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEEC
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccccccCCceeCCEEEecCCCCCHHHhccccCceEEEEecC
Confidence 233 355432 2443 5 3 368899999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceE
Q 008588 452 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 531 (560)
Q Consensus 452 ~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~ 531 (560)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+
T Consensus 413 ~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~ 488 (503)
T 1a4s_A 413 TEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFG----RENGQATVDYYSQ 488 (503)
T ss_dssp CHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESCCCCCCTTSCBCCSGGGEEC----CBSTTGGGGGSEE
T ss_pred CHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHCceeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcC
Confidence 999999999999999999999999999999999999999999997766778999999999987 3679999999999
Q ss_pred EEEEEEcCce
Q 008588 532 TRWILRGNGH 541 (560)
Q Consensus 532 ~K~v~~~~~~ 541 (560)
.|+|+++.++
T Consensus 489 ~k~v~~~~~~ 498 (503)
T 1a4s_A 489 LKTVIVEMGD 498 (503)
T ss_dssp EEEEEECCSC
T ss_pred ceEEEEccCC
Confidence 9999987665
No 14
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=100.00 E-value=3.8e-82 Score=691.66 Aligned_cols=400 Identities=17% Similarity=0.208 Sum_probs=349.7
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHH--HHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 189 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~--~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~ 189 (560)
+.++.+|+.++++...+ .+|+++|+++|++|| +.|++++..+|.++|++++++|++|.++|++++++|++++
T Consensus 52 v~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 125 (520)
T 3ed6_A 52 IINPYNQEVIFTVSEGT------KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKT 125 (520)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 45678899999887777 899999999999999 8999999999999999999999999999999988776543
Q ss_pred HhhchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHH
Q 008588 190 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 266 (560)
Q Consensus 190 ~~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 266 (560)
. .++ ..|+..+++.++++++..+. .+...+.. ..+...+++|+|+|||++|+|| ||. +.++++
T Consensus 126 ~----~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 191 (520)
T 3ed6_A 126 L----EES--------YADMDDIHNVFMYFAGLADKDGGEMIDSP--IPDTESKIVKEPVGVVTQITPWNYPLLQASWKI 191 (520)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHTTSCCEEEECCS--STTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeecccC--CCCCcccccccCccEEEEECCCccHHHHHHHHH
Confidence 2 222 24688888899998876543 33332211 1345678899999999999998 796 568999
Q ss_pred HHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHH
Q 008588 267 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 344 (560)
Q Consensus 267 ~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~ 344 (560)
+|||++||+||+|||+.||+|+.++++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++||.|++
T Consensus 192 apALaaGNtVVlKPs~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTGS~~vG~~i~~ 267 (520)
T 3ed6_A 192 APALATGCSLVMKPSEITPLTTIRVFELMEE----VGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMK 267 (520)
T ss_dssp HHHHHHTCEEEEECCTTCCHHHHHHHHHHHH----HCCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEEcCCcchHHHHHHHHHHHH----hCCCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 6 99999999996 6778888989999999999999999999998
Q ss_pred hcC---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC-----
Q 008588 345 STK---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 415 (560)
Q Consensus 345 ~a~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~----- 415 (560)
+++ ||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 268 ~aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~l~vG~p~ 346 (520)
T 3ed6_A 268 NAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIK-DKFEQALIDRVKKIKLGNGF 346 (520)
T ss_dssp HHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGTSTTCCCEEEEEHHHH-HHHHHHHHHHHTTCCBCCTT
T ss_pred HhhhcCCCEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCcccCceEEEcHHHH-HHHHHHHHHHHHhccCCCCc
Confidence 873 9999999999999999999999999999999999987 999999999999999 699999999987652
Q ss_pred -----------------------------CeE-ecCccc------cccc--c-C-----CCCCcccccccCceEEEEEeC
Q 008588 416 -----------------------------VGL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 451 (560)
Q Consensus 416 -----------------------------~~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~ 451 (560)
+++ +||.+. .++| | | ++|++++||+||||++|++|+
T Consensus 347 d~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 426 (520)
T 3ed6_A 347 DADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFE 426 (520)
T ss_dssp STTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCCTTSHHHHSCCCSSEEEEEEES
T ss_pred cCCCcccccCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCccccCCCCceECCeEEecCCCCCccccCceeCcEEEEEEeC
Confidence 122 344332 2344 5 2 368999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceE
Q 008588 452 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 531 (560)
Q Consensus 452 ~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~ 531 (560)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+..||||.++||+|+ ++|++|+++||+
T Consensus 427 ~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----e~G~~gl~~~t~ 502 (520)
T 3ed6_A 427 TEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGR----ELGKEGLEEYLV 502 (520)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESCSCCCCTTSCBCCSGGGEESC----BSHHHHHHTTEE
T ss_pred CHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCcCCc----cchHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999987777789999999999873 579999999999
Q ss_pred EEEEEEcCc
Q 008588 532 TRWILRGNG 540 (560)
Q Consensus 532 ~K~v~~~~~ 540 (560)
.|+|+++.+
T Consensus 503 ~k~v~~~~~ 511 (520)
T 3ed6_A 503 SKHILTNTN 511 (520)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEcCC
Confidence 999998764
No 15
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=100.00 E-value=6.5e-82 Score=691.02 Aligned_cols=402 Identities=18% Similarity=0.185 Sum_probs=348.4
Q ss_pred hhhhc-CCceeeEEecCCCcccchhhHHHHHHHHHHHH--HHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 008588 113 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 189 (560)
Q Consensus 113 ~~~~~-G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~--~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~ 189 (560)
.++.+ |+.++++...+ .+|+++++++|++|| +.|++++.++|.++|++++++|++|.++|++++++|++++
T Consensus 43 ~nP~t~g~~i~~~~~~~------~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 116 (528)
T 3u4j_A 43 VSPGHAGEVVGTWPEAS------ADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKP 116 (528)
T ss_dssp ECTTSTTCEEEEEECCC------HHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45678 89999988887 899999999999999 7899999999999999999999999999999988776543
Q ss_pred HhhchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHH
Q 008588 190 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 266 (560)
Q Consensus 190 ~~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 266 (560)
. .++ ..|+...++.++++++..+ ..+...+.. ..+...+++|+|+|||++|+|| ||. +.++++
T Consensus 117 ~----~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 182 (528)
T 3u4j_A 117 I----AQA--------RGEIGFCADLWSYAAGQARALEGQTHNNI--GDDRLGLVLREPVGVVGIITPWNFPFIIASERV 182 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--CTTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeeccC--CCCceeEEEeccceEEEEECCCccHHHHHHHHH
Confidence 2 222 2466777777787775443 223322211 1355678899999999999998 795 678999
Q ss_pred HHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHH
Q 008588 267 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 344 (560)
Q Consensus 267 ~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~ 344 (560)
+|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++|+.|++
T Consensus 183 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 258 (528)
T 3u4j_A 183 PWAIGSGCTVVLKPSEFTSGTSIRLAELARE----AGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGE 258 (528)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCSSTTHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCeEEEEcCCccHHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999987 6 99999999996 7778888888999999999999999999998
Q ss_pred hc---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC-----
Q 008588 345 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 415 (560)
Q Consensus 345 ~a---~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~----- 415 (560)
++ .||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 259 ~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 337 (528)
T 3u4j_A 259 IAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIR-DALMERLLDISRKVAFGDPL 337 (528)
T ss_dssp HHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCEECTT
T ss_pred HHHhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHhhcCCCCCcCCCEEEEechHH-HHHHHHHHHHHHhhcCCCCC
Confidence 77 39999999999999999999999999999999999987 999999999999999 699999999987652
Q ss_pred -----------------------------CeE-ecCccc---cccc--c-C-----CCCCcccccccCceEEEEEeCCHH
Q 008588 416 -----------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 454 (560)
Q Consensus 416 -----------------------------~~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 454 (560)
+++ +||.+. .++| | | ++|++++||+||||++|++|+|+|
T Consensus 338 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 417 (528)
T 3u4j_A 338 NERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTAD 417 (528)
T ss_dssp STTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CcCCccCCccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCcEecceEEecCCCCCccccceeeccEEEEEEeCCHH
Confidence 223 344332 3333 5 2 368999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEE
Q 008588 455 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 534 (560)
Q Consensus 455 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~ 534 (560)
|||+++|+++|||++||||+|.++++++++++++|+|+||+.+...+.+||||.++||+|+ ++|++|+++||+.|+
T Consensus 418 eAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~ft~~K~ 493 (528)
T 3u4j_A 418 EAVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGR----ELGRYGFDEYSQFKG 493 (528)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEESC----BSTTHHHHHTEEEEE
T ss_pred HHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCcCCcCcCCCCc----CchHHHHHHhhceEE
Confidence 9999999999999999999999999999999999999999987777889999999999873 569999999999999
Q ss_pred EEEcCceee
Q 008588 535 ILRGNGHVV 543 (560)
Q Consensus 535 v~~~~~~~~ 543 (560)
|+++.++.+
T Consensus 494 v~~~~~~~~ 502 (528)
T 3u4j_A 494 VHVTLGRPA 502 (528)
T ss_dssp EEEESSCCC
T ss_pred EEEeCCCCC
Confidence 999876443
No 16
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=7.8e-82 Score=689.37 Aligned_cols=402 Identities=15% Similarity=0.168 Sum_probs=346.1
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+.|++++..+|.++|++++++|++|.++|++++++|++++.
T Consensus 46 v~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 118 (521)
T 4e4g_A 46 IFNPATGEVQGTVALAS------DADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTI- 118 (521)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCH-
T ss_pred EECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 35678899999988777 89999999999999999999999999999999999999999999999887765442
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.+++++++.+.. +...+. ...+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 119 ---~ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 185 (521)
T 4e4g_A 119 ---DDA--------KGDIVRGLEVCEFVIGIPHLQKSEFTEG--AGPGIDMYSIRQPVGIGAGITPFNFPGMIPMWMFAP 185 (521)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHTHHHHTCEEEEEE--EETTEEEEEEEEECCEEEEECCSSCTTHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCcceeEEEcCCcEEEEECCCcchHHHHHHHHHH
Confidence 122 247788888888887654322 222211 12355678899999999999998 785 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a- 346 (560)
||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+|+.+.++.|..||+||+|+||||+++||.|+++|
T Consensus 186 ALaaGN~VVlKpse~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~L~~~p~vd~I~FTGS~~vG~~i~~~aa 261 (521)
T 4e4g_A 186 AIACGNAFILKPSERDPSVPIRLAELMIE----AGLPAGILNVVNGDKGAVDAILTHPDIAAVSFVGSTPIARYVYGTAA 261 (521)
T ss_dssp HHHTTCEEEEECCTTSTHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCcCeEEEEeCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 99999999999999999999999999987 6 99999999997555567788899999999999999999999887
Q ss_pred --CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCc-cCCcchHHHHHHHHHhcCC------
Q 008588 347 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELVVELQHEGV------ 416 (560)
Q Consensus 347 --~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~-i~dd~f~~~l~~~~~~~~~------ 416 (560)
.||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||++ +| |+|+++|+++++++.+
T Consensus 262 ~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~vG~~~~~ 340 (521)
T 4e4g_A 262 MNGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETA-NRLIDKLVPMVESLRIGPYTDE 340 (521)
T ss_dssp HTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTSEEEEEEBSHHHH-HHHHHHHHHHHHTCCBCCTTCT
T ss_pred hcCCCeeecCCCCCeEEEcCCCCHHHHHHHHHHHHHhCCCCCcccCeEEEEeCchHH-HHHHHHHHHHHHhccCCCCCCc
Confidence 39999999999999999999999999999999999977 9999999999999 99 6999999999887521
Q ss_pred ----------------------------eE-ecCcc------ccccc--c-C-----CCCCcccccccCceEEEEEeCCH
Q 008588 417 ----------------------------GL-FGGPR------ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 453 (560)
Q Consensus 417 ----------------------------~~-~g~~~------~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 453 (560)
++ +||.+ ..++| | | ++|++++||+||||++|++|+|+
T Consensus 341 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 420 (521)
T 4e4g_A 341 KADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNY 420 (521)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEECCBSSH
T ss_pred cCccCCCCCHHHHHHHHHHHHHHHHCCCEEEecCcccCCCcCCCCcEECCEEEEcCCCCCHhhcCcccCcEEEEEEeCCH
Confidence 22 34432 12333 5 2 36899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcC-CCCccCCccceeccccCcccccccchhcceEE
Q 008588 454 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFC-DGARFGLGAEVGISTSRIHARGPVGVEGLLTT 532 (560)
Q Consensus 454 deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~-~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~ 532 (560)
||||+++|+++|||++||||+|.++++++++++++|+|+||+++... +..||||.+.||+| +.+++|++|+++||+.
T Consensus 421 deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~k~SG~G--~~~~~G~~gl~~ft~~ 498 (521)
T 4e4g_A 421 EEALSLPMKHEYGNGVAIYTRDGDAARDFASRINIGMVGVNVPIPVPLAYHSFGGWKSSSFG--DLNQHGTDSIKFWTRT 498 (521)
T ss_dssp HHHHHHHHHSSEESEEEEECSBHHHHHHHHHHCCCSEEEESCSSCCCCTTSCBCCEETTEES--SCCBSHHHHHHHTEEE
T ss_pred HHHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCCcCCcccCCCC--CCccchHHHHHHhheE
Confidence 99999999999999999999999999999999999999999986543 66899999999987 2346799999999999
Q ss_pred EEEEEcCc
Q 008588 533 RWILRGNG 540 (560)
Q Consensus 533 K~v~~~~~ 540 (560)
|+|++++.
T Consensus 499 K~v~~~~~ 506 (521)
T 4e4g_A 499 KTITSRWP 506 (521)
T ss_dssp EEEEECCC
T ss_pred EEEEEecC
Confidence 99998754
No 17
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=100.00 E-value=1.4e-81 Score=682.34 Aligned_cols=401 Identities=18% Similarity=0.216 Sum_probs=345.7
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 16 ~~nP~tg~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 88 (486)
T 3pqa_A 16 VINPYSLEVIKKIPALS------REEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPI- 88 (486)
T ss_dssp EECTTTCCEEEEECCCC------HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 34577899999887777 89999999999999999999999999999999999999999999999887765442
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+...++.++++++..+ ..+...+. .+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 89 ---~ea--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 153 (486)
T 3pqa_A 89 ---KQA--------RVEVERSIGTFKLAAFYVKEHRDEVIPS----DDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAP 153 (486)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHHHCCEEEECC----TTEEEEEEEEECSEEEEEECSSSHHHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCceecC----CCceeEEEEccccEEEEECCCchHHHHHHHHHHH
Confidence 122 2356667777777664332 22332221 245678899999999999998 795 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+||||.||+|+.++++++++++.++ +|+|+||+|++ ++++++.|..||+||+|+||||+++||.|++.+
T Consensus 154 ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GlP~gvv~vv~g~~~~~g~~L~~~p~vd~V~fTGS~~~g~~i~~~a 233 (486)
T 3pqa_A 154 AIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKA 233 (486)
T ss_dssp HHHTTCEEEEEECTTSCHHHHHHHHHHHHHHHHTTCCGGGEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHC
T ss_pred HHHcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHHHHHHHhCCCccEEEEECChHHHHHHHHHc
Confidence 9999999999999999999999999999998888 99999999996 667788888899999999999999999999888
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC--------
Q 008588 347 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV-------- 416 (560)
Q Consensus 347 -~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~-------- 416 (560)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 234 a~~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 312 (486)
T 3pqa_A 234 GFKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIA-DKFIEMFVNKAKVLNVGNPLDEKT 312 (486)
T ss_dssp CSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred CCCceeeccCCcCcEEEcCCCCHHHHHHHHHHHHHhcCCCCccCCcEEEEeHHHH-HHHHHHHHHHHHhcccCCCCcCCC
Confidence 59999999999999999999999999999999999987 999999999999999 6999999999886531
Q ss_pred --------------------------eE-ecCccccccc-c-C----CCCCcccccccCceEEEEEeCCHHHHHHHHHhc
Q 008588 417 --------------------------GL-FGGPRASKLL-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQH 463 (560)
Q Consensus 417 --------------------------~~-~g~~~~~~~~-p-v----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~ 463 (560)
++ +||.+...++ | | ++|++++||+||||++|++|+| ||||+++|++
T Consensus 313 ~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~v~~~~~i~~eEiFGPVl~v~~~~~-deAi~~aN~~ 391 (486)
T 3pqa_A 313 DVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTILEVDRDNILCKTETFAPVIPIIRTNE-EEMIDIANST 391 (486)
T ss_dssp SBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEECCTTSGGGTCCCCSSEEEEEEECH-HHHHHHHTCS
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCCCCcEeccEEEeCCCCChhhcccccccEEEEEEEcH-HHHHHHHhcC
Confidence 22 2433222223 5 2 4689999999999999999999 9999999999
Q ss_pred CCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCc-CCCCccCCccceeccccCcccccccchhcceEEEEEEEcCc
Q 008588 464 GSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 540 (560)
Q Consensus 464 ~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~-~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~~~ 540 (560)
+|||++||||+|.++++++++++++|+|+||+++.+ .+.+||||.++||+| +++|++|+++||+.|+|+++.+
T Consensus 392 ~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G----r~~g~~gl~~f~~~k~v~~~~~ 465 (486)
T 3pqa_A 392 EYGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLG----REGVKYAMEEMSNIKTIIISKA 465 (486)
T ss_dssp SCCSEEEEECSBHHHHHHHHHHSCSSEEEESSCTTCCCTTSCBCCSGGGEES----CBSHHHHHHHTEEEEEEEEEC-
T ss_pred CCCcEEEEECCCHHHHHHHHHhCCcceEEEeCCCCcCCCCCCCCCcCcCcCC----CCCcHHHHHHhhceEEEEEcCC
Confidence 999999999999999999999999999999997643 357899999999987 3679999999999999998753
No 18
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=100.00 E-value=2e-81 Score=683.82 Aligned_cols=401 Identities=15% Similarity=0.184 Sum_probs=348.6
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 32 ~~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~- 104 (497)
T 3k2w_A 32 ILSPSTGKVIGEIPAGC------KADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLL- 104 (497)
T ss_dssp EECSSSCSEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 34567899999988877 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+...++.++++++..+ ..+...+.. ..+...+++|+|+|||++|+|| ||+ +.+++++|
T Consensus 105 ---~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ 171 (497)
T 3k2w_A 105 ---SVA--------EMEVDVTATFIDYGCDNALTIEGDILPSD--NQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGP 171 (497)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHTTTTCCEEEEECS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCcceeEEEcCCceEEEECCCccHHHHHHHHHHH
Confidence 122 2467788888888876543 233332211 2355678899999999999998 795 56899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+|||+.||+|+.++++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 172 ALaaGN~VVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~G~~i~~~a 247 (497)
T 3k2w_A 172 ALITGNTMVLKPTQETPLATTELGRIAKE----AGLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYKTS 247 (497)
T ss_dssp HHHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCSCTTTHHHHHHHCSSEEEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECcHHHHHHHHHHh
Confidence 99999999999999999999999999987 7 99999999996 667888888899999999999999999999888
Q ss_pred C---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC------
Q 008588 347 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 416 (560)
Q Consensus 347 ~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~------ 416 (560)
+ ||+++|||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 248 a~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vg~p~~~ 326 (497)
T 3k2w_A 248 AEYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVY-DEFMAKFLPLVKGLKVGDPMDA 326 (497)
T ss_dssp TTTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTSEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hhcCCCeEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhCCCCCCcCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 4 9999999999999999999999999999999999987 999999999999999 6999999999987632
Q ss_pred ----------------------------eE-ecCcc--c----cccc--c-C-----CCCCcccccccCceEEEEEeCCH
Q 008588 417 ----------------------------GL-FGGPR--A----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 453 (560)
Q Consensus 417 ----------------------------~~-~g~~~--~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 453 (560)
++ +||.+ . .++| | | ++|++++||+||||++|++|+|+
T Consensus 327 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 406 (497)
T 3k2w_A 327 DSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSM 406 (497)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred CCccccCcCHHHHHHHHHHHHHHHHCCCEEEecCccCCccccCCCceeCCEEEecCCCCcHhhcCCccCcEEEEEEeCCH
Confidence 22 34431 1 2333 5 2 36899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEE
Q 008588 454 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 533 (560)
Q Consensus 454 deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K 533 (560)
||||+++|+++|||++||||+|.+++++|++++++|+|+||+++...+.+||||.++||+|+ ++|++|+++||+.|
T Consensus 407 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G~----~~G~~gl~~ft~~k 482 (497)
T 3k2w_A 407 EQAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFGG----EDGKFGLEQYLEKK 482 (497)
T ss_dssp HHHHHHHTCSSEESEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCEETSEESC----BSHHHHHHTTEEEE
T ss_pred HHHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCcCCcCCCcCCc----cchHHHHHHhcceE
Confidence 99999999999999999999999999999999999999999988777889999999999873 67999999999999
Q ss_pred EEEEcCce
Q 008588 534 WILRGNGH 541 (560)
Q Consensus 534 ~v~~~~~~ 541 (560)
+|+++...
T Consensus 483 ~v~~~~~~ 490 (497)
T 3k2w_A 483 TVYINEAE 490 (497)
T ss_dssp EEEEECCC
T ss_pred EEEEEccc
Confidence 99987643
No 19
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=100.00 E-value=3.6e-81 Score=681.45 Aligned_cols=398 Identities=14% Similarity=0.144 Sum_probs=344.7
Q ss_pred hhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 008588 113 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 189 (560)
Q Consensus 113 ~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~ 189 (560)
.++.+|+.++++...+ .+|+++++++|++||+ .|++++.++|.++|++++++|++|.++|++++++|++++
T Consensus 40 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 113 (500)
T 1o04_A 40 VNPSTGEVICQVAEGD------KEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKP 113 (500)
T ss_dssp EETTTTEEEEEEECBC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4567889899988887 8899999999999999 999999999999999999999999999999988776544
Q ss_pred HhhchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHH
Q 008588 190 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 266 (560)
Q Consensus 190 ~~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 266 (560)
. .++. ..|+...++.++++++..+ ..+...+. ..+...+++|+|+|||++|+|| ||. +.++++
T Consensus 114 ~----~ea~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 179 (500)
T 1o04_A 114 Y----VISY-------LVDLDMVLKCLRYYAGWADKYHGKTIPI---DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 179 (500)
T ss_dssp H----HHHH-------HTHHHHHHHHHHHHHHHTTTCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHHH-------HHHHHHHHHHHHHHHHHHHHhhCcceec---CCCceEEEEEecCCcEEEECCCCchHHHHHHHH
Confidence 2 1221 1367777788888775443 33432221 2345568899999999999998 695 678999
Q ss_pred HHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHH
Q 008588 267 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 344 (560)
Q Consensus 267 ~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~ 344 (560)
+|||++||+||+||||.||+|+.+|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 180 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~ 255 (500)
T 1o04_A 180 GPALATGNVVVMKVAEQTPLTALYVANLIKE----AGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQV 255 (500)
T ss_dssp HHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCccChHHHHHHHHHHHH----hCCCcCeEEEEecCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 6 99999999996 6778888889999999999999999999997
Q ss_pred hcC----CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC----
Q 008588 345 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 415 (560)
Q Consensus 345 ~a~----~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~---- 415 (560)
+|+ ||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 256 ~aa~~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p 334 (500)
T 1o04_A 256 AAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIY-DEFVERSVARAKSRVVGNP 334 (500)
T ss_dssp HHHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBCCT
T ss_pred hhhhhcCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhccCCCCCCCCCEEEEehhHH-HHHHHHHHHHHHhCcCCCc
Confidence 764 9999999999999999999999999999999999987 999999999999999 699999999988752
Q ss_pred ------------------------------CeE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCCHH
Q 008588 416 ------------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 454 (560)
Q Consensus 416 ------------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 454 (560)
+++ +||... .++| | | ++|++++||+||||++|++|+|+|
T Consensus 335 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 414 (500)
T 1o04_A 335 FDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIE 414 (500)
T ss_dssp TSTTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECCHH
T ss_pred ccccCccCcccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEeCCCCCChhhhCcccceEEEEEeeCCHH
Confidence 223 244432 2433 5 3 367899999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEE
Q 008588 455 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 534 (560)
Q Consensus 455 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~ 534 (560)
|||+++|+++|||++||||+|.++++++++++++|+|+||++.......||||.+.||+| +++|++|+++|++.|+
T Consensus 415 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~f~~~K~ 490 (500)
T 1o04_A 415 EVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSG----RELGEYGLQAYTEVKT 490 (500)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCSGGGEES----CBSTGGGGGGGEEEEE
T ss_pred HHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcceEE
Confidence 999999999999999999999999999999999999999997766678999999999886 3579999999999999
Q ss_pred EEEcC
Q 008588 535 ILRGN 539 (560)
Q Consensus 535 v~~~~ 539 (560)
|+++.
T Consensus 491 v~~~~ 495 (500)
T 1o04_A 491 VTVKV 495 (500)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 98864
No 20
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=100.00 E-value=2.9e-81 Score=683.53 Aligned_cols=401 Identities=17% Similarity=0.179 Sum_probs=343.8
Q ss_pred hhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHH
Q 008588 113 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-----RLQALQSQDRRKILLDVADALEANESLIKVENEADVA 187 (560)
Q Consensus 113 ~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~ 187 (560)
.++.+|+.++++...+ .+|+++|+++|++||+ .|++++..+|.++|++++++|++|.++|++++++|++
T Consensus 28 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 101 (503)
T 3iwj_A 28 INPATQNIIGDIPAAT------KEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCG 101 (503)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677899999988777 8999999999999999 9999999999999999999999999999999887765
Q ss_pred HHHhhchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-ccccc-cccccCCCeeEEEeecceEEEEEEcCC-Chh-hHH
Q 008588 188 AAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQIL-KRTELADGLILEKTSCPLGVLLIVFES-RPD-ALV 263 (560)
Q Consensus 188 ~~~~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~ 263 (560)
++. .++ ..|+..+++.+++++++.+. .+... +......+...+++|+|+|||++|+|| ||. +.+
T Consensus 102 k~~----~ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~ 169 (503)
T 3iwj_A 102 KPL----DEA--------AWDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMAT 169 (503)
T ss_dssp CCH----HHH--------HHHHHHHHHHHHHHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEEEECCSSSHHHHHH
T ss_pred CCH----HHH--------HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCccceEEEcCCceEEEECCCchHHHHHH
Confidence 432 122 13566677777776654321 12211 100011345678899999999999998 796 568
Q ss_pred HHHHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHH
Q 008588 264 QIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQ 341 (560)
Q Consensus 264 ~~~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~ 341 (560)
++++|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++||.
T Consensus 170 ~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~ 245 (503)
T 3iwj_A 170 WKVAPALAAGCAAILKPSELASLTCLELGEICKE----VGLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGSSATGSK 245 (503)
T ss_dssp HHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCHHHHTHHHHTCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCcHHHHHHHhhCCCccEEEEECcHHHHHH
Confidence 9999999999999999999999999999999987 6 99999999996 6678888889999999999999999999
Q ss_pred HHHhcC---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC--
Q 008588 342 IKESTK---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-- 415 (560)
Q Consensus 342 i~~~a~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~-- 415 (560)
|+++|. ||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 246 i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g 324 (503)
T 3iwj_A 246 IMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIA-TEFLNRIVKWIKNIKIS 324 (503)
T ss_dssp HHHHHGGGTCCEEEECCCCEEEEECSSSCHHHHHHHHHHHHTGGGGCCTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBS
T ss_pred HHHHHhcCCCCEEEECCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCCcccCCeeEEcHHHH-HHHHHHHHHHHHhccCC
Confidence 998873 8999999999999999999999999999999999987 999999999999999 699999999888652
Q ss_pred --------------------------------CeE-ecCccc----cccc--c-C-----CCCCcccccccCceEEEEEe
Q 008588 416 --------------------------------VGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIV 450 (560)
Q Consensus 416 --------------------------------~~~-~g~~~~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~ 450 (560)
+++ +||.+. .++| | | ++|++++||+||||++|++|
T Consensus 325 ~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 404 (503)
T 3iwj_A 325 DPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTF 404 (503)
T ss_dssp CTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCCSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred CCCCCCCcccCccCHHHHHHHHHHHHHHHHCCCEEEecCCCCccCCCCceeCCeeeecCCCCchhhCceeeCceEEEEEe
Confidence 222 344322 2333 5 2 36899999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcce
Q 008588 451 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLL 530 (560)
Q Consensus 451 ~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft 530 (560)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++......+||||.++||+|+ ++|.+|+++||
T Consensus 405 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G~----~~G~~g~~~f~ 480 (503)
T 3iwj_A 405 STEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFGR----ELGEWGLDNYL 480 (503)
T ss_dssp SSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSSCCCCTTSCBCCSGGGEECC----BSHHHHHHTTE
T ss_pred CCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcccCCC----cchHHHHHHhh
Confidence 99999999999999999999999999999999999999999999987667789999999999873 57999999999
Q ss_pred EEEEEEEcCc
Q 008588 531 TTRWILRGNG 540 (560)
Q Consensus 531 ~~K~v~~~~~ 540 (560)
+.|+|+++.+
T Consensus 481 ~~k~v~~~~~ 490 (503)
T 3iwj_A 481 SVKQVTQYIS 490 (503)
T ss_dssp EEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999998653
No 21
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=100.00 E-value=6.8e-81 Score=677.87 Aligned_cols=398 Identities=17% Similarity=0.170 Sum_probs=347.1
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 29 ~~~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~- 101 (481)
T 3jz4_A 29 VTNPANGDKLGSVPKMG------ADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPL- 101 (481)
T ss_dssp EECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-
Confidence 34677899999988777 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.+++++.... ..+...+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 102 ---~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 168 (481)
T 3jz4_A 102 ---AEA--------KGEISYAASFIEWFAEEGKRIYGDTIPGH--QADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGP 168 (481)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHGGGCCEEEECCS--STTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccc--CCCceEEEEEcCccEEEEECCCcchHHHHHHHHHH
Confidence 122 2477888888888876432 334333211 2355678899999999999998 785 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+|||+.||+|+.++++++.+ + +|+|+||+|++ +.++++.|..||+||+|+||||+++|+.|++++
T Consensus 169 ALaaGN~VVlKps~~tp~~~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~fTGS~~~g~~i~~~a 244 (481)
T 3jz4_A 169 ALAAGCTMVLKPASQTPFSALALAELAIR----AGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQC 244 (481)
T ss_dssp HHHHTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCBCTHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCCCcHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHH
Confidence 99999999999999999999999999987 6 99999999996 667888888999999999999999999999887
Q ss_pred C---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC-------
Q 008588 347 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 415 (560)
Q Consensus 347 ~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 415 (560)
. ||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 245 a~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 323 (481)
T 3jz4_A 245 AKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVY-DRFAEKLQQAMSKLHIGDGLDN 323 (481)
T ss_dssp TTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHTTCCBSCTTST
T ss_pred hhcCCceEEecCCCCeEEEcCCCCHHHHHHHHHHHHHHhCCCcccCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCccC
Confidence 4 9999999999999999999999999999999999987 999999999999999 699999999987652
Q ss_pred ---------------------------CeE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHH
Q 008588 416 ---------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 457 (560)
Q Consensus 416 ---------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 457 (560)
+++ +|+... .++| | | ++|.+++||+||||++|++|+|+||||
T Consensus 324 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 403 (481)
T 3jz4_A 324 GVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVI 403 (481)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECCHHHHH
T ss_pred cCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCceeccEEEecCCCCcccccccccCceEEEEEECCHHHHH
Confidence 222 244321 2233 5 2 368999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEEEEE
Q 008588 458 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 537 (560)
Q Consensus 458 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~ 537 (560)
+++|+++|||++||||+|.++++++++++++|+|+||++....+..||||.++||+| +++|++|+++||+.|+|++
T Consensus 404 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~g~~~~t~~k~v~~ 479 (481)
T 3jz4_A 404 AQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLG----REGSKYGIEDYLEIKYMCI 479 (481)
T ss_dssp HHHHCSSCCSEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCSGGGEES----CBSHHHHHHTTEEEEEEEE
T ss_pred HHHhcCCCCceEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCcCCcccCcCC----CCchHHHHHHhhceeEEEE
Confidence 999999999999999999999999999999999999998777788999999999987 3679999999999999987
Q ss_pred c
Q 008588 538 G 538 (560)
Q Consensus 538 ~ 538 (560)
+
T Consensus 480 ~ 480 (481)
T 3jz4_A 480 G 480 (481)
T ss_dssp E
T ss_pred e
Confidence 4
No 22
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=100.00 E-value=7.2e-81 Score=678.30 Aligned_cols=399 Identities=15% Similarity=0.150 Sum_probs=345.0
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 42 v~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 114 (495)
T 1wnd_A 42 VYNPATGDVLLEIAEAS------AEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPL- 114 (495)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 45678899999988877 88999999999999999999999999999999999999999999999887765442
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++. ..|+...++.++++++..+ ..++..+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 115 ---~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 182 (495)
T 1wnd_A 115 ---HSAF-------NDEIPAIVDVFRFFAGAARCLNGLAAGEY--LEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAP 182 (495)
T ss_dssp ---HHHH-------HTHHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHHH-------HHHHHHHHHHHHHHHHHHHHhcCccccCC--CCCceeEEeeecCCeEEEECCCcchHHHHHHHHHH
Confidence 1221 1157777888888775443 334333211 1244568889999999999998 695 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccccCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a- 346 (560)
||++||+||+|||+.||+|+.++++++.+ +||+|+||+|+| +.++++.|..||+||+|+||||+++||.|+++|
T Consensus 183 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----alP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aa 258 (495)
T 1wnd_A 183 ALAAGNCVVLKPSEITPLTALKLAELAKD----IFPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTA 258 (495)
T ss_dssp HHHTTCEEEEECCTTCCHHHHHHHHHHTT----TSCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHHHHHHG
T ss_pred HHHcCCeeEeeCCCCChHHHHHHHHHHHH----hCCcCeEEEEeCCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHH
Confidence 99999999999999999999999999987 499999999996 667788888899999999999999999999887
Q ss_pred --CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhc---------
Q 008588 347 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE--------- 414 (560)
Q Consensus 347 --~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~--------- 414 (560)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 259 ~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 337 (495)
T 1wnd_A 259 SSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIY-DTLVEKLGAAVATLKSGAPDDES 337 (495)
T ss_dssp GGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBCCTTSTT
T ss_pred hcCCccccccCCCCeEEECCcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhH-HHHHHHHHHHHHhccCCCCccCC
Confidence 39999999999999999999999999999999999987 999999999999999 69999999988764
Q ss_pred -------------------------C-CeEe-cCc-cc-cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHH
Q 008588 415 -------------------------G-VGLF-GGP-RA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 457 (560)
Q Consensus 415 -------------------------~-~~~~-g~~-~~-~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 457 (560)
| +++. ||. .. .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 338 ~~~Gpli~~~~~~rv~~~i~~a~~~G~a~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 417 (495)
T 1wnd_A 338 TELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVV 417 (495)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHHH
T ss_pred CCccCCCCHHHHHHHHHHHHHHHhCCCeEEEECCcccCCCCCeeCCEEEeCCCCCChhhhccccCceEEEEEeCCHHHHH
Confidence 3 4443 554 22 2443 5 3 368999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEEEEE
Q 008588 458 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 537 (560)
Q Consensus 458 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~ 537 (560)
+++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.+.||+|+ ++|++|+++||+.|+|++
T Consensus 418 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~f~~~k~v~~ 493 (495)
T 1wnd_A 418 NWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGK----DMSLYGLEDYTVVRHVMV 493 (495)
T ss_dssp HHHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCCCCCTTSCBCCSGGGEECC----BSHHHHHHTTEEEEEEEE
T ss_pred HHHhcCCCCeeEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCCcCcCCc----cchHHHHHHhhCeEEEEe
Confidence 9999999999999999999999999999999999999876666789999999998863 579999999999999986
Q ss_pred c
Q 008588 538 G 538 (560)
Q Consensus 538 ~ 538 (560)
+
T Consensus 494 ~ 494 (495)
T 1wnd_A 494 K 494 (495)
T ss_dssp E
T ss_pred c
Confidence 4
No 23
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=100.00 E-value=1.7e-81 Score=685.99 Aligned_cols=401 Identities=15% Similarity=0.178 Sum_probs=344.8
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 189 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~ 189 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+ .|+++|..+|.++|++++++|++|.++|++++++|++++
T Consensus 56 v~nP~tg~~i~~v~~a~------~~dv~~av~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 129 (517)
T 2o2p_A 56 TINPTDGSVICQVSLAQ------VSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAV 129 (517)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC
Confidence 34677899999988887 8999999999999999 999999999999999999999999999999988776543
Q ss_pred HhhchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccc-cCCCeeEEEeecceEEEEEEcCC-Chh-hHHHH
Q 008588 190 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTE-LADGLILEKTSCPLGVLLIVFES-RPD-ALVQI 265 (560)
Q Consensus 190 ~~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~ 265 (560)
. .++. ..|+..+++.++++++..+ ..+...+... ...+...+++|+|+|||++|+|| ||. +.+++
T Consensus 130 ~----~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~ 198 (517)
T 2o2p_A 130 Y----TLAL-------KTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWK 198 (517)
T ss_dssp H----HHHH-------HTTTHHHHHHHHHHHHHGGGCCEEEECCCCCTTSCEEEEEEEEECCEEEEECCSSSHHHHHHHH
T ss_pred H----HHHH-------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEecCCccEEEECCCcchHHHHHHH
Confidence 2 1221 1357778888888876543 2343322110 01233568899999999999998 795 56899
Q ss_pred HHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHH
Q 008588 266 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIK 343 (560)
Q Consensus 266 ~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~ 343 (560)
++|||++||+||+|||+.||+|+.++++++++ + ||+|+||+|+| +.++++.|..||+||+|+||||+++|+.|+
T Consensus 199 ~a~ALaaGNtVVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~g~~~g~~L~~~~~v~~V~FTGS~~~G~~I~ 274 (517)
T 2o2p_A 199 TAACLAAGNTVVIKPAQVTPLTALKFAELTLK----AGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIM 274 (517)
T ss_dssp HHHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHH
T ss_pred HHHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECCHHHHHHHH
Confidence 99999999999999999999999999999987 6 99999999997 667788888899999999999999999998
Q ss_pred HhcC----CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC---
Q 008588 344 ESTK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--- 415 (560)
Q Consensus 344 ~~a~----~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~--- 415 (560)
++|. ||++||||||||+||++|||||.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 275 ~~aa~~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~vGd 353 (517)
T 2o2p_A 275 KSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIH-NQFVQKVVEEVEKMKIGN 353 (517)
T ss_dssp HHHHHHTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHTTCCBSC
T ss_pred HHhHHhcCCeEEEECCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCeEEEEeHHHH-HHHHHHHHHHHHhcCCCC
Confidence 8764 9999999999999999999999999999999999987 999999999999999 699999999887652
Q ss_pred -------------------------------CeE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCC-
Q 008588 416 -------------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD- 452 (560)
Q Consensus 416 -------------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~- 452 (560)
+++ +||... .++| | | ++|++++||+||||++|++|+|
T Consensus 354 p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 433 (517)
T 2o2p_A 354 PLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADG 433 (517)
T ss_dssp TTSTTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECTT
T ss_pred CCCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeccccCCCCCCeECCEEEeCCCCCChhhhccccccEEEEEEcCCC
Confidence 222 244332 2443 5 3 3689999999999999999999
Q ss_pred -HHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceE
Q 008588 453 -VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 531 (560)
Q Consensus 453 -~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~ 531 (560)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.++||+|+ ++|++|+++||+
T Consensus 434 ~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----~~G~~~l~~~~~ 509 (517)
T 2o2p_A 434 DVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGK----DLGEAALNEYLR 509 (517)
T ss_dssp CSHHHHHHHTCSSCCSCCEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCCGGGEECC----BSHHHHHHTTEE
T ss_pred CHHHHHHHHhcCCCCceEEEeCCCHHHHHHHHHhcCEeEEEECCCCCCCCCCCcCCcCcCCcCc----cChHHHHHHhCC
Confidence 999999999999999999999999999999999999999999876666789999999999873 579999999999
Q ss_pred EEEEEEc
Q 008588 532 TRWILRG 538 (560)
Q Consensus 532 ~K~v~~~ 538 (560)
.|+|+++
T Consensus 510 ~k~v~~~ 516 (517)
T 2o2p_A 510 IKTVTFE 516 (517)
T ss_dssp EEEEEEE
T ss_pred ceEEEee
Confidence 9999874
No 24
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=100.00 E-value=7.3e-81 Score=684.14 Aligned_cols=400 Identities=18% Similarity=0.203 Sum_probs=344.3
Q ss_pred hhhhhc-CCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 008588 112 IIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 190 (560)
Q Consensus 112 i~~~~~-G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~ 190 (560)
+.++.+ |+.++++...+ .+|+++|+++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 55 ~~nP~t~~~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 128 (538)
T 3qan_A 55 SWNPARKDQLVGSVSKAN------QDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPW 128 (538)
T ss_dssp EECSSSTTCEEEEEECBC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH
T ss_pred EECCCCCCcEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 456788 88899988888 89999999999999999999999999999999999999999999999877665432
Q ss_pred hhchhHHHHHHhhCChhHHHHHHHHHHHHhcc-cc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHH
Q 008588 191 EAGYAKSLVSRLALKPGKISSLAKSIRILADM-EE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 266 (560)
Q Consensus 191 ~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 266 (560)
.++ ..|+..+++.++++++. .+ ..++..+. ..+...+++|+|+|||++|+|| ||+ +.++++
T Consensus 129 ----~ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 193 (538)
T 3qan_A 129 ----KEA--------DADTAEAIDFLEYYARQMIELNRGKEILS---RPGEQNRYFYTPMGVTVTISPWNFALAIMVGTA 193 (538)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHHHHHTCBCCCC---CTTEEEEEEEEECCEEEEECCSTTTTHHHHHHH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHHHhcCCeeecc---cCCcceeeecCCCcEEEEECCCchHHHHHHHHH
Confidence 122 23567777777777654 22 22333221 1255678899999999999998 795 678999
Q ss_pred HHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHH
Q 008588 267 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 344 (560)
Q Consensus 267 ~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~ 344 (560)
+|||++||+||+||||.||+|+.++++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 194 a~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~ 269 (538)
T 3qan_A 194 VAPIVTGNTVVLKPASTTPVVAAKFVEVLED----AGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYE 269 (538)
T ss_dssp HHHHHTTCEEEEECCTTSHHHHHHHHHHHHH----TTCCTTSEEECCBCTTTTHHHHHHCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCCCeEEEEecCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 6 99999999996 6778888888999999999999999999998
Q ss_pred hc---------CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhc
Q 008588 345 ST---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE 414 (560)
Q Consensus 345 ~a---------~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~ 414 (560)
.| .||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 270 ~aa~~~~~~~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~ 348 (538)
T 3qan_A 270 RAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVY-DEVLEKTVALAKNL 348 (538)
T ss_dssp HHTSCCTTCCSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHTTC
T ss_pred HhhhccccccccccEEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCccCceeEEehHHH-HHHHHHHHHHHHhc
Confidence 76 47999999999999999999999999999999999987 999999999999999 69999999998765
Q ss_pred CC---------------------------------eE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEe
Q 008588 415 GV---------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIV 450 (560)
Q Consensus 415 ~~---------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~ 450 (560)
.+ ++ +||... .++| | | ++|++++||+||||++|++|
T Consensus 349 ~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~ 428 (538)
T 3qan_A 349 TVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKA 428 (538)
T ss_dssp CBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHSEEEECCCEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred cCCCCCCCCCCCcCccCHHHHHHHHHHHHHHHHCCeEEeCCCcCCCCCceeCCeeeecCCCCChhhCCCcCCcEEEEEEe
Confidence 21 12 244322 2343 5 2 36899999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEc-CCcCc-CCCCccCCccceeccccCcccccccchhc
Q 008588 451 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHN-ASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEG 528 (560)
Q Consensus 451 ~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN-~~~~~-~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ 528 (560)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+|| ..+.. .+..||||.++||+|. +++|++|+++
T Consensus 429 ~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~G~~gl~~ 505 (538)
T 3qan_A 429 NDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDS---KAGGPDYLAL 505 (538)
T ss_dssp SSHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHCCCSEEEESSCSCCCCTTTSCBCCEETTBSCC---CBTSTTTGGG
T ss_pred CCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCeeEEEEeCCCCCCCCCCCCcCCcCcCCCCc---ccccHHHHHH
Confidence 99999999999999999999999999999999999999999999 55544 6789999999999872 3679999999
Q ss_pred ceEEEEEEEcCc
Q 008588 529 LLTTRWILRGNG 540 (560)
Q Consensus 529 ft~~K~v~~~~~ 540 (560)
||+.|+|+++.+
T Consensus 506 ft~~k~v~~~~~ 517 (538)
T 3qan_A 506 HMQAKTVSEMYA 517 (538)
T ss_dssp GEEEEEEEEEC-
T ss_pred hhCeEEEEEecC
Confidence 999999998764
No 25
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=100.00 E-value=7.1e-81 Score=679.25 Aligned_cols=399 Identities=16% Similarity=0.155 Sum_probs=344.4
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHH
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAA 188 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~ 188 (560)
+.++.+|+.++++...+ .+|+++++++|++||+ .|+++|.++|.++|++++++|++|.++|++++++|+++
T Consensus 40 v~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 113 (501)
T 1bxs_A 40 VFNPATEEKLCEVEEGD------KEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGK 113 (501)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTC
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34577899999988887 8899999999999999 99999999999999999999999999999999877654
Q ss_pred HHhhchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHH
Q 008588 189 AQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQI 265 (560)
Q Consensus 189 ~~~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~ 265 (560)
+. .++. ..|+...++.++++++..+ ..+...+. ..+...+++|+|+|||++|+|| ||. +.+++
T Consensus 114 ~~----~e~~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~ 179 (501)
T 1bxs_A 114 LF----SNAY-------LMDLGGCIKTLRYCAGWADKIQGRTIPM---DGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWK 179 (501)
T ss_dssp CH----HHHH-------HTHHHHHHHHHHHHHHHGGGCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHH
T ss_pred CH----HHHH-------HHHHHHHHHHHHHHHHHHHHhhCCeeec---cCCcceeEEecCCceEEEECCCcchHHHHHHH
Confidence 42 1221 2366777777887775433 23332221 2345668899999999999998 695 67899
Q ss_pred HHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHH
Q 008588 266 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIK 343 (560)
Q Consensus 266 ~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~ 343 (560)
++|||++||+||+|||+.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|+
T Consensus 180 ~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~ 255 (501)
T 1bxs_A 180 IGPALSCGNTVVVKPAEQTPLTALHMGSLIKE----AGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIK 255 (501)
T ss_dssp HHHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHTCTTCSEEEEESCHHHHHHHH
T ss_pred HHHHHHcCCeeeccCCCccHHHHHHHHHHHHH----hCCCcceEEEEecCchHHHHHHHhCCCcCEEEEECCHHHHHHHH
Confidence 99999999999999999999999999999987 6 99999999996 677888888999999999999999999998
Q ss_pred HhcC----CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC---
Q 008588 344 ESTK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--- 415 (560)
Q Consensus 344 ~~a~----~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~--- 415 (560)
++|+ ||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 256 ~~aa~~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~ 334 (501)
T 1bxs_A 256 EAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIY-DEFVRRSVERAKKYVLGN 334 (501)
T ss_dssp HHHHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHH-HHHHHHHHHHHTCCCBSC
T ss_pred HHhhhccCCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEchhHH-HHHHHHHHHHHHhcCCCC
Confidence 8764 9999999999999999999999999999999999987 999999999999999 699999999887642
Q ss_pred -------------------------------CeEe-cCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCCH
Q 008588 416 -------------------------------VGLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 453 (560)
Q Consensus 416 -------------------------------~~~~-g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 453 (560)
+++. ||... .++| | | ++|++++||+||||++|++|+|+
T Consensus 335 p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 414 (501)
T 1bxs_A 335 PLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSL 414 (501)
T ss_dssp TTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEECCH
T ss_pred CcccCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEecCCCCCHHHhcccccceEEEEEeCCH
Confidence 2232 44332 2443 5 3 36889999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEE
Q 008588 454 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 533 (560)
Q Consensus 454 deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K 533 (560)
||||+++|+++|||++||||+|.++++++++++++|+|+||++.......||||.+.||+| +++|++|+++|++.|
T Consensus 415 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~pfGG~k~SG~G----~~~G~~~l~~f~~~K 490 (501)
T 1bxs_A 415 DDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNG----RELGEYGFHEYTEVK 490 (501)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhcCCCCeeEEEEcCCHHHHHHHHHhcCeeEEEECCCCCCCCCCCCCCcCcCCcC----ccchHHHHHHhhCee
Confidence 9999999999999999999999999999999999999999997766678999999999886 357999999999999
Q ss_pred EEEEcC
Q 008588 534 WILRGN 539 (560)
Q Consensus 534 ~v~~~~ 539 (560)
+|+++.
T Consensus 491 ~v~~~~ 496 (501)
T 1bxs_A 491 TVTIKI 496 (501)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 998754
No 26
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.5e-81 Score=678.16 Aligned_cols=398 Identities=15% Similarity=0.139 Sum_probs=345.4
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 189 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~ 189 (560)
+.++.+|+.++++...+ .+|+++++++|++||+ .|+++|.++|.++|++++++|++|.++|++++++|++++
T Consensus 28 ~~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 101 (495)
T 3b4w_A 28 VRCPATGEYVGKVPMAA------AADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQP 101 (495)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34677899999988887 8899999999999999 899999999999999999999999999999988776544
Q ss_pred HhhchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHH
Q 008588 190 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 266 (560)
Q Consensus 190 ~~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 266 (560)
. .++. ..|+...++.++++++..+ ..+...+. ..+...+++|+|+|||++|+|| ||. ++++++
T Consensus 102 ~----~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 167 (495)
T 3b4w_A 102 P----TIIE-------TMHWMGSMGAMNYFAGAADKVTWTETRT---GSYGQSIVSREPVGVVGAIVAWNVPLFLAVNKI 167 (495)
T ss_dssp H----HHHH-------HTTTHHHHHHHHHHHTCGGGSCSEEEEE---ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCceEEEEEccCceEEEECCCcchHHHHHHHH
Confidence 2 1221 1356777888888876543 33433221 2344568899999999999998 795 678999
Q ss_pred HHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHh
Q 008588 267 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 345 (560)
Q Consensus 267 ~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~ 345 (560)
+|||++||+||+||||.||+|+.++++++++ + ||+|+||+|+|+.++++.|..||+||+|+||||+++||.|+++
T Consensus 168 ~~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~~ 243 (495)
T 3b4w_A 168 APALLAGCTIVLKPAAETPLTANALAEVFAE----VGLPEGVLSVVPGGIETGQALTSNPDIDMFTFTGSSAVGREVGRR 243 (495)
T ss_dssp HHHHHTTCEEEEECBTTSCHHHHHHHHHHHH----TTCCTTSEEECCBSHHHHHHHTTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEecCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHH
Confidence 9999999999999999999999999999997 7 9999999999866678888889999999999999999999988
Q ss_pred c---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC------
Q 008588 346 T---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------ 415 (560)
Q Consensus 346 a---~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~------ 415 (560)
| .||++||||||||+||++|||||.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 244 aa~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~ 322 (495)
T 3b4w_A 244 AAEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRY-DEIVAAVTNFVTALPVGPPSD 322 (495)
T ss_dssp HHHTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHSCBCCTTC
T ss_pred hhhcCCceeecCCCcceEEECCCCCHHHHHHHHHHHHhhcCCCCCCCCeEEEEcccHH-HHHHHHHHHHHHhcCCCCCcc
Confidence 7 49999999999999999999999999999999999987 999999999999999 699999999987652
Q ss_pred ----------------------------CeE-ecCccc----cccc--c-C-----CCCCcccccccCceEEEEEeCCHH
Q 008588 416 ----------------------------VGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 454 (560)
Q Consensus 416 ----------------------------~~~-~g~~~~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 454 (560)
+++ +||... .++| | | ++|++++||+||||++|++|+|+|
T Consensus 323 ~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 402 (495)
T 3b4w_A 323 PAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEE 402 (495)
T ss_dssp TTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEecCcccccccCCceeCCEEecCCCCCChhhhcccccceEEEEecCCHH
Confidence 233 355432 2443 5 3 368899999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEE
Q 008588 455 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 534 (560)
Q Consensus 455 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~ 534 (560)
|||+++|+++|||++||||+|.++++++++++++|+|+||+++ ..+.+||||.+.||+| +++|++|+++||+.|+
T Consensus 403 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~-~~~~~PfGG~k~SG~G----r~~G~~gl~~~~~~k~ 477 (495)
T 3b4w_A 403 DAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGINWYA-FDPGSPFGGYKNSGIG----RENGPEGVEHFTQQKS 477 (495)
T ss_dssp HHHHHHHCSSCCSCCEEECSCHHHHHHHHHHSCCSCCEESSCC-CCTTSCBCCSGGGEES----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCEeEEEECCCC-CCCCCCCCCCCCCCcC----ccchHHHHHHhcceeE
Confidence 9999999999999999999999999999999999999999877 6678999999999986 3679999999999999
Q ss_pred EEEcC
Q 008588 535 ILRGN 539 (560)
Q Consensus 535 v~~~~ 539 (560)
|+++.
T Consensus 478 v~~~~ 482 (495)
T 3b4w_A 478 VLLPM 482 (495)
T ss_dssp EECCT
T ss_pred EEEcc
Confidence 98864
No 27
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=1e-80 Score=680.66 Aligned_cols=399 Identities=16% Similarity=0.166 Sum_probs=348.3
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 46 ~~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 118 (515)
T 2d4e_A 46 SLDPATNEVLGVAARGG------EREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVL- 118 (515)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 45678899999988887 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.++++++..+. .+...+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 119 ---~ea--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 185 (515)
T 2d4e_A 119 ---RIV--------RAQVARAAENFAFYAEYAEHAMEDRTFPV--DRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAP 185 (515)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHTTGGGTTCEEECCB--TTTEEEEEEEEECCCEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecCCceEEECCCCchhhhhhhhhhH
Confidence 122 13677888899998875543 34332211 2345678899999999999998 795 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+||||.||+|+.++++++++ + +|+|+||+|+| +.++++.|..||+||+|+||||+++||.|+++|
T Consensus 186 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~I~~~a 261 (515)
T 2d4e_A 186 ALAFGNTVVLKPAEWSPFTATKLAEILKE----ADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNA 261 (515)
T ss_dssp HHHTTCCEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCeeeecCCCCcHHHHHHHHHHHHH----hCCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999987 7 99999999996 567888888899999999999999999999887
Q ss_pred C---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC-------
Q 008588 347 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 415 (560)
Q Consensus 347 ~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 415 (560)
. ||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 262 a~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 340 (515)
T 2d4e_A 262 ADHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIF-EDFVGKVVERARAIRVGHPLDP 340 (515)
T ss_dssp GGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEHHHH-HHHHHHHHHHHHHCCBCCTTST
T ss_pred hhcCCceEecCCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEehhHH-HHHHHHHHHHHhhcccCCcccc
Confidence 4 9999999999999999999999999999999999987 999999999999999 699999999988752
Q ss_pred ---------------------------CeE-ecCccc----------cccc--c-C----CCCCcccccccCceEEEEEe
Q 008588 416 ---------------------------VGL-FGGPRA----------SKLL--Q-I----PETRLFHHEYNSMVCTVEIV 450 (560)
Q Consensus 416 ---------------------------~~~-~g~~~~----------~~~~--p-v----~~~~~~~eE~FGPVl~v~~~ 450 (560)
+++ +||... .++| | | ++|++++||+||||++|++|
T Consensus 341 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~~~g~~~~PTvl~~~~~~~i~~eEiFGPVl~v~~~ 420 (515)
T 2d4e_A 341 ETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVGENHMKIAQEEIFGPVLVAIPF 420 (515)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCBCTTSCBCTTTTCBCCEEEECCTTSHHHHSCCCSSEEEEEEE
T ss_pred cCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccccccccccccCCCceeCCEEEeCCCCChhhhccccCCceEEEee
Confidence 122 354431 2444 5 3 35789999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcce
Q 008588 451 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLL 530 (560)
Q Consensus 451 ~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft 530 (560)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+|+ ++|++|+++||
T Consensus 421 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~~~ 496 (515)
T 2d4e_A 421 KDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDRR----EGGTYALDFYT 496 (515)
T ss_dssp SSHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESSSCCCCTTSCBCCSGGGBCSC----BSHHHHHHHHE
T ss_pred CCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCCc----cchHHHHHHhC
Confidence 99999999999999999999999999999999999999999999977667789999999999873 57999999999
Q ss_pred EEEEEEEcC
Q 008588 531 TTRWILRGN 539 (560)
Q Consensus 531 ~~K~v~~~~ 539 (560)
+.|+|+++.
T Consensus 497 ~~K~v~~~~ 505 (515)
T 2d4e_A 497 DLKTIALPL 505 (515)
T ss_dssp EEEEEEEES
T ss_pred ceeEEEEcC
Confidence 999998864
No 28
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=100.00 E-value=2.1e-80 Score=670.01 Aligned_cols=404 Identities=17% Similarity=0.145 Sum_probs=329.0
Q ss_pred chhhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 008588 110 DSIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 189 (560)
Q Consensus 110 ~~i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~ 189 (560)
..+.+..+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++
T Consensus 8 ~~~~~~~~~~~i~~v~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 81 (457)
T 3lns_A 8 HHHSSGHIDDDDKHMNYLS------PAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKP 81 (457)
T ss_dssp ---------------CCCC------HHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCC
T ss_pred ccccCCCCCCeeeecCCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 3456677888888887777 8999999999999999999999999999999999999999999999998887654
Q ss_pred HhhchhHHHHHHhhCChhHHHHHHHHHHHHhcccccccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHH
Q 008588 190 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 267 (560)
Q Consensus 190 ~~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 267 (560)
. .++...++..+...++++++.++.+.+. ....... ...+...+++|+|+|||++|+|| ||. +++++++
T Consensus 82 ~----~ea~~~ev~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 152 (457)
T 3lns_A 82 K----DVVDLAEIGAVLHEIDFALAHLDEWVAP-VSVPSPD----IIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLI 152 (457)
T ss_dssp H----HHHHHHTHHHHHHHHHHHHHHHHHHTSC-EEECCCG----GGCSCEEEEEEEECCEEEEECCSSSTTHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccc----cCCCcceEEEeecceEEEEECCCcchHHHHHHHHH
Confidence 2 2333233333344555555555554421 1111110 01234578899999999999998 785 6789999
Q ss_pred HHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccccCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 008588 268 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 347 (560)
Q Consensus 268 ~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~ 347 (560)
|||++||+||+|||+.||+|+.++++++.+ ++|+|+||+|+++.++++.|.. ++||+|+||||+++||.|+++|.
T Consensus 153 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----alP~gvv~vv~g~~~~~~~L~~-~~vd~V~fTGS~~~G~~i~~~aa 227 (457)
T 3lns_A 153 GAIIGGNTCIIKPSETTPETSAVIEKIIAE----AFAPEYVAVIQGGRDENSHLLS-LPFDFIFFTGSPNVGKVVMQAAA 227 (457)
T ss_dssp HHHHTTCEEEEECCTTCHHHHHHHHHHHHH----HCCTTTEEECCCCHHHHHHHTT-SCCSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCCHhhEEEecCCHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHh
Confidence 999999999999999999999999999987 4999999999976566777766 68999999999999999998873
Q ss_pred ---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhc---------
Q 008588 348 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE--------- 414 (560)
Q Consensus 348 ---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~--------- 414 (560)
||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 228 ~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~p~~~~~gp 306 (457)
T 3lns_A 228 KHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVK-DALLERLVERVKTELPEINSTGK 306 (457)
T ss_dssp TTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHHHHHHHHHHCCSTTTTCC
T ss_pred hccCceEEECCCCCCCeECCCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhcCCCcccccC
Confidence 9999999999999999999999999999999999987 999999999999999 69999999998775
Q ss_pred ------------------CCeEecCccc-cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHHHHHh-cCCC
Q 008588 415 ------------------GVGLFGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQ-HGSA 466 (560)
Q Consensus 415 ------------------~~~~~g~~~~-~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~-~~~G 466 (560)
+.-++||... .++| | | ++|++++||+||||++|++|+|+||||+++|+ ++||
T Consensus 307 li~~~~~~rv~~~i~~a~~~~~~gg~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~~g 386 (457)
T 3lns_A 307 LVTERQVQRLVSLLEATQGQVLVGSQADVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKP 386 (457)
T ss_dssp CSSHHHHHHHHHHHHHCCSEEEECCCEEGGGTEECCEEEESCCTTSGGGSSCCCSSEEEEEEESCHHHHHHHHHHHSCSC
T ss_pred CCCHHHHHHHHHHHHhcCCeEEeCCccCCCCceeCCEEEecCCCCChhhcCcccCcEEEEEEeCCHHHHHHHHHcCCCCC
Confidence 2123455432 3333 5 2 36899999999999999999999999999999 9999
Q ss_pred ceeEEEecCHHHHHHHHhhcCeeeEEEcCCcC--cCCCCccCCccceeccccCcccccccchhcceEEEEEEEc
Q 008588 467 HTDCIVAEDQKVAETFLCQVDSAAVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 538 (560)
Q Consensus 467 L~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~--~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~ 538 (560)
|++||||+|.+++++|++++++|+|+||++.. ..+.+||||.++||+|+ ++|.+|+++||+.|+|++.
T Consensus 387 L~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~~PfGG~k~SG~G~----~~g~~~~~~f~~~k~v~~~ 456 (457)
T 3lns_A 387 LAVYVFGKDMDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMGE----YHGHFSYLTFTHKKSVRIV 456 (457)
T ss_dssp SEEEEECSCHHHHHHHHHTSCCSEEEESCCSGGGGCTTSCBCCCGGGEECC----BSHHHHHHHTEEEEEEEEC
T ss_pred eEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCCcCCcCcCCCCC----CchHHHHHHhhCeeEEEeC
Confidence 99999999999999999999999999999753 35778999999999873 5799999999999999863
No 29
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=100.00 E-value=5.5e-80 Score=670.38 Aligned_cols=398 Identities=18% Similarity=0.196 Sum_probs=346.3
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 26 v~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 98 (479)
T 2imp_A 26 VVNPATEAVISRIPDGQ------AEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQ- 98 (479)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 45677899999988887 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.++++++..+ ..+...+.. ..+...+++++|+|||++|+|| ||. +.+++++|
T Consensus 99 ---~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 165 (479)
T 2imp_A 99 ---QLA--------EVEVAFTADYIDYMAEWARRYEGEIIQSD--RPGENILLFKRALGVTTGILPWNFPFFLIARKMAP 165 (479)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHTTTTTCCCEEECCS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhhCCccccC--CCCceeEEEEeccceEEEECCCchHHHHHHHHHHH
Confidence 122 2478888999999886553 334332211 1244678899999999999998 795 56899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+|||+.||+|+.++++++++ + ||+|+||+|++ ++++++.|..||+||+|+||||+++|+.|++++
T Consensus 166 ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~a 241 (479)
T 2imp_A 166 ALLTGNTIVIKPSEFTPNNAIAFAKIVDE----IGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATA 241 (479)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTEEEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCccchHHHHHHHHHHHH----hCCCcCeEEEEECCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999987 6 99999999996 566788888899999999999999999999887
Q ss_pred C---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC-------
Q 008588 347 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 415 (560)
Q Consensus 347 ~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 415 (560)
. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 242 a~~~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 320 (479)
T 2imp_A 242 AKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIY-DQFVNRLGEAMQAVQFGNPAER 320 (479)
T ss_dssp HTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTTC
T ss_pred hccCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhH-HHHHHHHHHHHHhcccCCcccc
Confidence 3 9999999999999999999999999999999999987 999999999999999 699999999987642
Q ss_pred ----------------------------CeE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHH
Q 008588 416 ----------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAA 456 (560)
Q Consensus 416 ----------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deA 456 (560)
+++ +||... .++| | | ++|++++||+||||++|++|+|+|||
T Consensus 321 ~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPVl~v~~~~~~~eA 400 (479)
T 2imp_A 321 NDIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDA 400 (479)
T ss_dssp SSCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSSCCCCCEEEESCCTTSGGGGSCCCSSEEEEEEESSHHHH
T ss_pred CCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCceECCEEEeCCCCCCHHHhCccCCceEEEEeeCCHHHH
Confidence 233 355431 2433 5 2 36889999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEEEE
Q 008588 457 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 536 (560)
Q Consensus 457 i~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~ 536 (560)
|+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+
T Consensus 401 i~~aN~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~~l~~~~~~k~v~ 476 (479)
T 2imp_A 401 ISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIG----GADGKHGLHEYLQTQVVY 476 (479)
T ss_dssp HHHHHCSSEESEEEEECCCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCEETTEES----CBSHHHHHHTTEEEEEEE
T ss_pred HHHHhcCCCCeeEEEECCCHHHHHHHHHhCCEeEEEECCCCCCCCCCCCCCCCCCCCC----CCchHHHHHHhcCeeEEE
Confidence 9999999999999999999999999999999999999997766678999999999987 367999999999999998
Q ss_pred Ec
Q 008588 537 RG 538 (560)
Q Consensus 537 ~~ 538 (560)
++
T Consensus 477 ~~ 478 (479)
T 2imp_A 477 LQ 478 (479)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 30
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=100.00 E-value=2.9e-80 Score=675.24 Aligned_cols=402 Identities=16% Similarity=0.159 Sum_probs=344.9
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 41 v~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 113 (500)
T 2j6l_A 41 TYCPANNEPIARVRQAS------VADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKIL- 113 (500)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-
Confidence 45677899899888877 88999999999999999999999999999999999999999999998876654332
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+...++.++++++..+ ..+...+.. ..+...+++|+|+|||++|+|| ||. +++++++|
T Consensus 114 ---~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 180 (500)
T 2j6l_A 114 ---VEG--------VGEVQEYVDICDYAVGLSRMIGGPILPSE--RSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAI 180 (500)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHTTTCCCBEECCS--STTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccc--CCCceeEEEEecccEEEEECCCcchhhHHHHHHHH
Confidence 121 2467777778887775443 233322211 1234457789999999999998 695 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a- 346 (560)
||++||+||+|||+.||+|+.++++++.+++.++ +|+|+||+|+|+.++++.|..||+||+|+||||+++||.|++++
T Consensus 181 ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~g~~i~~~aa 260 (500)
T 2j6l_A 181 AMICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMVQ 260 (500)
T ss_dssp HHHTTCEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCGGGEEEECCSHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEECCCccHHHHHHHHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHhcCCCcCEEEEECCHHHHHHHHHHhc
Confidence 9999999999999999999999999999988889 99999999998667888888899999999999999999999877
Q ss_pred --CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC--------
Q 008588 347 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 415 (560)
Q Consensus 347 --~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~-------- 415 (560)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 261 ~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 339 (500)
T 2j6l_A 261 ERFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIH-DEVVNRLKKAYAQIRVGNPWDPN 339 (500)
T ss_dssp HTTCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred cCCCceEEEcCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCcCCCcEEEEcHHHH-HHHHHHHHHHhhhcccCCcccCC
Confidence 49999999999999999999999999999999999987 999999999999999 699999999988753
Q ss_pred --------------------------CeE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHH
Q 008588 416 --------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 458 (560)
Q Consensus 416 --------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 458 (560)
.++ +||... .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 340 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 419 (500)
T 2j6l_A 340 VLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFA 419 (500)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSSCBCCEEEESCCTTCHHHHSCCSSSEEEEEEECCHHHHHH
T ss_pred CccccCCCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCCEEcCEEEECCCCcChhhcCcccCceEEEEeeCCHHHHHH
Confidence 222 344331 2333 5 3 3688999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHH--hhcCeeeEEEcCCcCc-CCCCccCCccceeccccCcccccccchhcceEEEEE
Q 008588 459 HIHQHGSAHTDCIVAEDQKVAETFL--CQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 535 (560)
Q Consensus 459 ~aN~~~~GL~a~I~t~d~~~a~~~~--~~l~~G~V~VN~~~~~-~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v 535 (560)
++|+++|||++||||+|.+++++++ +++++|+|+||++... ....||||.+.||+| +++|.+|+++|++.|+|
T Consensus 420 ~aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~G~V~vN~~~~~~~~~~PfGG~k~SG~G----~~~g~~~~~~f~~~k~v 495 (500)
T 2j6l_A 420 WNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGG----RESGSDAWKQYMRRSTC 495 (500)
T ss_dssp HHHTSSCCSEEEEECCCHHHHHHHHSTTSCCSSEEEESSCTTCCCTTSEECCSGGGCSC----CEESTTGGGGGEEEEEE
T ss_pred HHhCCCCCcEEEEECCCHHHHHHHHhhccCCeeEEEECCCCccCCCCCCcCCcCCCCCC----CcchHHHHHHhhceEEE
Confidence 9999999999999999999999999 7799999999986543 357899999999886 35799999999999999
Q ss_pred EEc
Q 008588 536 LRG 538 (560)
Q Consensus 536 ~~~ 538 (560)
+++
T Consensus 496 ~~~ 498 (500)
T 2j6l_A 496 TIN 498 (500)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
No 31
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=100.00 E-value=4.8e-80 Score=671.42 Aligned_cols=398 Identities=16% Similarity=0.176 Sum_probs=345.4
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 30 ~~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 102 (487)
T 2w8n_A 30 VQDPASGAALGMVADCG------VREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPL- 102 (487)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 34677899999988887 88999999999999999999999999999999999999999999999987765442
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.++++++..+ ..++..+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 103 ---~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 169 (487)
T 2w8n_A 103 ---KEA--------HGEILYSAFFLEWFSEEARRVYGDIIHTP--AKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGA 169 (487)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHGGGCCCEEECCS--CTTCEEEEEEEECCEEEEECCSSSTTHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecceEEEEECCCcchHHHHHHHHHH
Confidence 222 1357778888888775443 234332211 1344678899999999999998 685 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeec---C-CchhhHhhcCCCCccEEEeecCHHHHHHHH
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVT---S-REEIPDLLKLDDVIDLVIPRGSNKLVSQIK 343 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~---~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~ 343 (560)
||++||+||+|||+.||+|+.++++++.+ + ||+|+||+|+ | +.++++.|..||+||+|+||||+++|+.|+
T Consensus 170 ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~~~~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~ 245 (487)
T 2w8n_A 170 ALAAGCTVVVKPAEDTPFSALALAELASQ----AGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILL 245 (487)
T ss_dssp HHHHTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCCHHHHHHHHHHHTTCTTEEEEEEEECHHHHHHHH
T ss_pred HHHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCCCeEEEEecCCCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999987 6 9999999999 7 566788888999999999999999999999
Q ss_pred Hhc---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHh-cC---
Q 008588 344 EST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQH-EG--- 415 (560)
Q Consensus 344 ~~a---~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~-~~--- 415 (560)
+++ .||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|++++++ +.
T Consensus 246 ~~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~G~ 324 (487)
T 2w8n_A 246 HHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIH-DAFVKAFAEAMKKNLRVGN 324 (487)
T ss_dssp HHHHTTTCEEEEEECEEEEEEECTTSCHHHHHHHHHHHHTCCCSCCCSEEEEEEEEHHHH-HHHHHHHHHHHHHHCCBSC
T ss_pred HHHhccCCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCccccCCEEEEcccHH-HHHHHHHHHHHHhhcccCC
Confidence 887 49999999999999999999999999999999999987 999999999999999 6999999999888 52
Q ss_pred -------------------------------CeE-ecCccc-ccc--c-c-C-----CCCCcccccccCceEEEEEeCCH
Q 008588 416 -------------------------------VGL-FGGPRA-SKL--L-Q-I-----PETRLFHHEYNSMVCTVEIVDDV 453 (560)
Q Consensus 416 -------------------------------~~~-~g~~~~-~~~--~-p-v-----~~~~~~~eE~FGPVl~v~~~~~~ 453 (560)
+++ +||... .++ + | | ++|++++||+||||++|++|+|+
T Consensus 325 p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gg~~~~~g~~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 404 (487)
T 2w8n_A 325 GFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTE 404 (487)
T ss_dssp TTSTTCCBCCCSSHHHHHHHHHHHHHHHTTTCEEEECCSBCTTCTTCBCCEEEEEECGGGGTTCTTCCSSEEEEEEESCH
T ss_pred cccccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCceECCEEEecCCCcchhhhcccccceEEEEEeCCH
Confidence 222 244332 243 4 5 3 35899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEE
Q 008588 454 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 533 (560)
Q Consensus 454 deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K 533 (560)
||||+++|+++|||++||||+|.++++++++++++|+|+||++....+..||||.+.||+| +++|++|+++||+.|
T Consensus 405 ~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~~~SG~G----~~~G~~~l~~f~~~k 480 (487)
T 2w8n_A 405 EEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLG----REGSKYGIDEYLELK 480 (487)
T ss_dssp HHHHHHHTCTTCCSEEEEECCCHHHHHHHHHHSCSSEEEESCSCCCCTTSCBCCSGGGEES----CBSTTTGGGGGEEEE
T ss_pred HHHHHHHhCCCCCceEEEeCCCHHHHHHHHHhCCeeeEEEcCCCCCCCCCCCCCCCCCCcC----CCchHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999998766677999999999886 367999999999999
Q ss_pred EEEEc
Q 008588 534 WILRG 538 (560)
Q Consensus 534 ~v~~~ 538 (560)
+|+++
T Consensus 481 ~v~~~ 485 (487)
T 2w8n_A 481 YVCYG 485 (487)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99874
No 32
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=100.00 E-value=3.1e-80 Score=674.69 Aligned_cols=400 Identities=15% Similarity=0.152 Sum_probs=346.2
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 190 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~-~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~ 190 (560)
+.++.+|+.++++...+ .+|+++++++|++||+ .|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 36 v~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 109 (501)
T 1uxt_A 36 VKSPIDLATIAKVISPS------REEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPK 109 (501)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 34567899999988887 8999999999999999 9999999999999999999999999999999887765432
Q ss_pred hhchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-ccccccccccCC--CeeEEEeecceEEEEEEcCC-Chh-hHHHH
Q 008588 191 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELAD--GLILEKTSCPLGVLLIVFES-RPD-ALVQI 265 (560)
Q Consensus 191 ~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~ 265 (560)
.++ ..|+..+++.++++++..+. .++..+...... +...+++|+|+|||++|+|| ||. +.+++
T Consensus 110 ----~ea--------~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~ 177 (501)
T 1uxt_A 110 ----SAA--------VGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNK 177 (501)
T ss_dssp ----HHH--------HHHHHHHHHHHHTGGGGGGGTCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCTTSTTHHHHHH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCcCceEEEEEeeccEEEEECCCccHHHHHHHH
Confidence 122 24688889999998866543 243322110012 34668899999999999998 785 67899
Q ss_pred HHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHH
Q 008588 266 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 344 (560)
Q Consensus 266 ~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~ 344 (560)
++|||++||+||+|||+.||+|+.++++++++ + +|+|+||+|+|..++++.|..||+||+|+||||+++||.|++
T Consensus 178 ~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~G~~i~~ 253 (501)
T 1uxt_A 178 ITYSFIYGNAVVVKPSISDPLPAAMAVKALLD----AGFPPDAIALLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVK 253 (501)
T ss_dssp HHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEeCCCCchHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHhCCCcCEEEEeCcHHHHHHHHH
Confidence 99999999999999999999999999999987 7 999999999963378888889999999999999999999999
Q ss_pred hcC-CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC------
Q 008588 345 STK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 416 (560)
Q Consensus 345 ~a~-~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~------ 416 (560)
+|+ ||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 254 ~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 332 (501)
T 1uxt_A 254 VGGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVY-GKLVEEVAKRLSSLRVGDPRDP 332 (501)
T ss_dssp HHCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hcCCCeEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhcCCCCCCcCCcEEEeccchH-HHHHHHHHHHHHhccCCCcccc
Confidence 885 9999999999999999999999999999999999987 999999999999999 6999999999886532
Q ss_pred ----------------------------eE-ecCccccc-cc--c-C----C----CCCcccccccCceEEEEEeCCHHH
Q 008588 417 ----------------------------GL-FGGPRASK-LL--Q-I----P----ETRLFHHEYNSMVCTVEIVDDVRA 455 (560)
Q Consensus 417 ----------------------------~~-~g~~~~~~-~~--p-v----~----~~~~~~eE~FGPVl~v~~~~~~de 455 (560)
++ +||.. .+ +| | | + +|++++||+||||++|++|+|+||
T Consensus 333 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~-~g~~~~~Ptvl~~v~~~~~~~~i~~eEiFGPVl~v~~~~~~de 411 (501)
T 1uxt_A 333 TVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRR-LGPTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQ 411 (501)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCB-CSSSCBCCEEEECCHHHHTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCCceECCEEEeCCCCCCCcCHHHhCcccCceEEEEeeCCHHH
Confidence 22 34433 34 33 5 2 2 368999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCC-cCcCCCCccCCccceeccccCcccccccchhcceEEEE
Q 008588 456 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNAS-TRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 534 (560)
Q Consensus 456 Ai~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~-~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~ 534 (560)
||+++|+++|||++||||+|.++++++++++++|+|+||++ +...+.+||||.++||+| +++|++|+++||+.|+
T Consensus 412 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~~k~ 487 (501)
T 1uxt_A 412 AIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVF----REGIGYAVEAVTAYKT 487 (501)
T ss_dssp HHHHHHTSSEESEEEEECCCHHHHHHHHHHCCSSEEEETSCCCCTTSSSCBCCEETTEES----CBSTTTTHHHHEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCHHHHHHHHHhCCEeeEEEeCCCCCCCCCCCCCCcCCCCCC----ccChHHHHHHhCceeE
Confidence 99999999999999999999999999999999999999987 555678999999999987 3679999999999999
Q ss_pred EEEcC
Q 008588 535 ILRGN 539 (560)
Q Consensus 535 v~~~~ 539 (560)
|+++.
T Consensus 488 v~~~~ 492 (501)
T 1uxt_A 488 IVFNY 492 (501)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 98864
No 33
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=7.2e-80 Score=671.59 Aligned_cols=400 Identities=16% Similarity=0.182 Sum_probs=347.3
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 26 ~~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~- 98 (490)
T 2ve5_A 26 TINPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPL- 98 (490)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 34677899999988887 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++. ..|+...++.++++++..+ ..+...+. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 99 ---~ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~ 165 (490)
T 2ve5_A 99 ---AETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAP 165 (490)
T ss_dssp ---HHHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHHh-------HHHHHHHHHHHHHHHHHHHHhcCccccC---CCCceeeEeeccccEEEEECCCcchHHHHHHHHHH
Confidence 1211 1267777888888775443 22332221 2355678899999999999998 796 56799999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+|||+.||+|+.+|++++.+ + +|+|+||+|++ +.++++.|..||+||+|+||||+++||.|++++
T Consensus 166 ALaaGN~vVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~vd~v~fTGS~~~g~~i~~~a 241 (490)
T 2ve5_A 166 ALAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASA 241 (490)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCChHHHHHHHhCCCcCEEEEeCCcHHHHHHHHhc
Confidence 99999999999999999999999999987 6 99999999996 777888888999999999999999999999887
Q ss_pred ----CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC------
Q 008588 347 ----KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------ 415 (560)
Q Consensus 347 ----~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~------ 415 (560)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 242 ~a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~d 320 (490)
T 2ve5_A 242 SSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQD 320 (490)
T ss_dssp HHHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTS
T ss_pred hhccccceEEEcCCCceeEECCCCCHHHHHHHHHHHHHhcCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCC
Confidence 49999999999999999999999999999999999987 999999999999999 699999999988652
Q ss_pred ----------------------------CeE-ecCccc------cccc--c-C-----CCCCcccccccCceEEEEEeCC
Q 008588 416 ----------------------------VGL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 452 (560)
Q Consensus 416 ----------------------------~~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~ 452 (560)
+++ +||.+. .++| | | ++|++++||+||||++|++|+|
T Consensus 321 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPvl~v~~~~~ 400 (490)
T 2ve5_A 321 ENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDD 400 (490)
T ss_dssp TTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESC
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceEccEEEecCCCCCccccceeeCCeEEEEEeCC
Confidence 122 344331 2333 5 2 3689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEE
Q 008588 453 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 532 (560)
Q Consensus 453 ~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~ 532 (560)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.++||+|+ ++|.+|+++||+.
T Consensus 401 ~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~pfGG~k~SG~G~----~~G~~~~~~f~~~ 476 (490)
T 2ve5_A 401 EDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGR----ENGLTTLAHYTRI 476 (490)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEESC----BSHHHHHHTTEEE
T ss_pred HHHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCCCCCCCCC----cchHHHHHHhhee
Confidence 999999999999999999999999999999999999999999987677889999999999873 5799999999999
Q ss_pred EEEEEcCc
Q 008588 533 RWILRGNG 540 (560)
Q Consensus 533 K~v~~~~~ 540 (560)
|+|+++.+
T Consensus 477 k~v~~~~~ 484 (490)
T 2ve5_A 477 KSVQVELG 484 (490)
T ss_dssp EEEEEECS
T ss_pred EEEEEccC
Confidence 99998765
No 34
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=100.00 E-value=4.6e-80 Score=668.17 Aligned_cols=386 Identities=21% Similarity=0.231 Sum_probs=325.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhCChhHHHHHHH
Q 008588 135 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 214 (560)
Q Consensus 135 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~~~~~ 214 (560)
.+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++. .++...++..+..+++++++
T Consensus 17 ~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~ea~~~ev~~~~~~~~~~~~ 92 (469)
T 3sza_A 17 MSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNE----WNAYYEEVVYVLEEIEYMIQ 92 (469)
T ss_dssp -CHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH----HHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999988876543 23332334444456677777
Q ss_pred HHHHHhcccccccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHHHHHhCCeEEeeCCcchHHHHHHHH
Q 008588 215 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 292 (560)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGNtvVlKPse~tp~t~~~l~ 292 (560)
.++.|+... ..+.... ..+...+++|+|+|||++|+|| ||. +.+++++|||++||+||+||||.||+|+.+++
T Consensus 93 ~~~~~~~~~-~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 167 (469)
T 3sza_A 93 KLPEWAADE-PVEKTPQ----TQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLA 167 (469)
T ss_dssp HHHHHHSCE-ECCCCGG----GTTSEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHH
T ss_pred HHHhhhccc-ccCcccc----CCCccceeeccCCCEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHH
Confidence 776665311 1111111 1233568889999999999998 795 67899999999999999999999999999999
Q ss_pred HHHHHhcccccCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhcC---CCEEEecCccceEEEcCCCCH
Q 008588 293 KVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK---IPVLGHADGICHVYVDKSANL 368 (560)
Q Consensus 293 ~l~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~---~~~~lElGGk~p~iV~~dADl 368 (560)
+++.+ +||+|+||+|+| ++.+++++ .| +||+|+||||+++||.|+++|+ ||++||||||||+||++||||
T Consensus 168 ~l~~~----alP~gvv~vv~g~~~~~~~ll-~~-~vd~I~FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~iV~~dADl 241 (469)
T 3sza_A 168 TIIPQ----YLDKDLYPVINGGVPETTELL-KE-RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDL 241 (469)
T ss_dssp HHHHH----HSCTTTSCBCCCSHHHHHHHT-TS-CCSEEEEESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECTTSCH
T ss_pred HHHHH----hCCcceEEEEECCHHHHHHHH-hc-CCCEEEEECCHHHHHHHHHHHhhccCceEEecCCCCceEECCCCCH
Confidence 99986 499999999996 44556666 45 7999999999999999998873 999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhc----------------------------CCeE-
Q 008588 369 DVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE----------------------------GVGL- 418 (560)
Q Consensus 369 d~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~----------------------------~~~~- 418 (560)
|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++ |+++
T Consensus 242 ~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~i~ga~v~ 320 (469)
T 3sza_A 242 DVACRRIAWGKFMNSGQTCVAPDYILCDPSIQ-NQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVA 320 (469)
T ss_dssp HHHHHHHHHHHHGGGGCCTTSCCEEEECGGGH-HHHHHHHHHHHHHHHCSCGGGCTTCCCCSCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEehhHH-HHHHHHHHHHHHHhcCCCCcccCcccccCCHHHHHHHHHHHcCCEEE
Confidence 9999999999999987 999999999999999 69999999988763 1222
Q ss_pred ecCccc-cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCee
Q 008588 419 FGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSA 489 (560)
Q Consensus 419 ~g~~~~-~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G 489 (560)
+||... .++| | | ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|
T Consensus 321 ~GG~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~~G 400 (469)
T 3sza_A 321 YGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSG 400 (469)
T ss_dssp ECCCEETTTTEECCEEEESCCTTSGGGTSCCCSSEEEEEECSSHHHHHHHHHHSCCCSEEEEECSCHHHHHHHHHHCCCS
T ss_pred eCCccCCCCceeCCeeecCCCCcchhhhccccCCeEEEEecCCHHHHHHHHHcCCCCceEEEECCCHHHHHHHHHhCCcc
Confidence 244322 2333 5 2 36899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCcC--cCCCCccCCccceeccccCcccccccchhcceEEEEEEEcCc
Q 008588 490 AVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 540 (560)
Q Consensus 490 ~V~VN~~~~--~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~~~ 540 (560)
+|+||+... ..+..||||.++||+|+ ++|.+|+++||+.|+|+++..
T Consensus 401 ~V~vN~~~~~~~~~~~PfGG~k~SG~Gr----~~G~~g~~~ft~~K~v~~~~~ 449 (469)
T 3sza_A 401 GVAANDVIVHITLHSLPFGGVGNSGMGS----YHGKKSFETFSHRRSCLVRPL 449 (469)
T ss_dssp EEEESCSSGGGSCTTSCBCCCGGGEECC----BSTHHHHHHTEEEEEEEECCS
T ss_pred eEEEeCCCCCCCCCCCCcCCccccccCc----cchHHHHHHhhCeeEEEECCc
Confidence 999999753 35678999999999873 679999999999999998754
No 35
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=100.00 E-value=2.8e-80 Score=671.82 Aligned_cols=399 Identities=16% Similarity=0.117 Sum_probs=335.0
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ ++|+++|+++|++||+.|+++|.++|.++|++++++|++|.++|++++++|+|+..
T Consensus 10 v~nP~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 82 (474)
T 4h7n_A 10 VRNPRTGKFDYVIIPPP------PRLLAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLS- 82 (474)
T ss_dssp EECTTTCSEEEEECCCC------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSH-
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH-
Confidence 34678999999987777 99999999999999999999999999999999999999999999999887765421
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.+ ..|+..++..++++++... ..+..... ....+...+..++|+|||++|+|| ||. +.+++++|
T Consensus 83 ----~~--------~~ev~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~~~ 149 (474)
T 4h7n_A 83 ----IT--------VLEIDSFLASIDRWCGLAPELLQTSAKN-TSIPFIALQQSLVPYPLVGVISPWNFPLTLSMIDTIP 149 (474)
T ss_dssp ----HH--------HHHHHHHHHHHHHHHHHHHHHHCCEEEE-CSSTTEEEEEEEEECSEEEEEECSSSHHHHHHTTHHH
T ss_pred ----HH--------HHHHHHHHHHHHHHHhhhhhcccccccC-CCCCCccceEEEEeccEEEEECCCCcHHHHHhcccCc
Confidence 11 1356666666776654321 11111110 112344566788999999999998 796 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a- 346 (560)
||++||+||+||||.||+++..+++++.+ + +|+|++|+|+++.+.+..|..| +|+|+||||+++||.|++.+
T Consensus 150 ALaaGN~VVlKps~~tp~~~~~l~~~~~~----ag~p~gv~~~v~g~~~~~~~l~~~--v~~v~FTGS~~~G~~i~~~aa 223 (474)
T 4h7n_A 150 ALLAGCAVVVKPSEIAPRFVAPLLMALNT----VPELRDVLIFVEGGGETGANLINY--VDFVCFTGSVATGREVAETAA 223 (474)
T ss_dssp HHHHTCEEEEEECTTSCTTHHHHHHHHTT----CTTTTTTEEECCCCHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHH
T ss_pred chhcCCceeecccccCchHHHHHHhhhhh----hcccccceeeccccchhhhhhhhc--cceEEeccccchhhhhhhhhh
Confidence 99999999999999999999999998876 6 9999999999766677777655 99999999999999999877
Q ss_pred --CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC-------
Q 008588 347 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 416 (560)
Q Consensus 347 --~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~------- 416 (560)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 224 ~~~~~v~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 302 (474)
T 4h7n_A 224 RRFIPAYLELGGKDPAIVLESANLELATSAILWGAVVNTGQSCLSIERIYVAESKF-EEFYHQLIAKAHRLQLAYPLVED 302 (474)
T ss_dssp HHTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCBCCSSGGG
T ss_pred cccccccccCCCcCccccCchhhHHHHHHHHHhhhccCCCCceeecccccchHHHH-HHHHHHHHHHhhccccCCCcccc
Confidence 49999999999999999999999999999999999987 999999999999999 6999999998887532
Q ss_pred ---------------------------eE-ecCccc---cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHH
Q 008588 417 ---------------------------GL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 457 (560)
Q Consensus 417 ---------------------------~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 457 (560)
.+ .|+... .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 303 ~~~gpli~~~~~~~v~~~i~~a~~~ga~v~~Gg~~~~~~~g~~~~Ptv~~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 382 (474)
T 4h7n_A 303 GAIGPIIAEKQAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVMTNVNHSMKVMTEETFGPIMPVMPFPDVEEAV 382 (474)
T ss_dssp CSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCEEETTEEECCCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHH
T ss_pred cccCccccHHHHHHHHHHHHHHHhhCceeccCCcccccCCCcccCceeEEeeccccccccccccCcEEEEEEECCHHHHH
Confidence 12 233221 1233 5 2 368999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCc--CCCCccCCccceeccccCcccccccchhcceEEEEE
Q 008588 458 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 535 (560)
Q Consensus 458 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~--~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v 535 (560)
+++|+++|||++||||+|.++++++++++++|+|+||+.+.. ...+||||.+.||+|. +++|.+|+++|++.|+|
T Consensus 383 ~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~v~iN~~~~~~~~~~~pfgG~~~SG~G~---~~~G~~g~~~f~~~k~v 459 (474)
T 4h7n_A 383 YLANDTIYGLSAAVFAGSEDEALKVARQLNAGAISINDAALTAMMHEGEKNAFNFSGLGG---SRVGAAGLKRFLRKQAF 459 (474)
T ss_dssp HHHHCSSCCSEEEEECSSHHHHHHHHTTSCCSEEEESSSCGGGTCCCSCCCCCGGGEESC---CSSTTHHHHTTEEEEEE
T ss_pred HHHHcCCCCCeEEEEeCCHHHHHHHHHhCCeeEEEECCCCccCCcCCCCCCCcCCCCCCC---CcchHHHHHHhCeEEEE
Confidence 999999999999999999999999999999999999987543 3578999999999873 24589999999999999
Q ss_pred EEcCc
Q 008588 536 LRGNG 540 (560)
Q Consensus 536 ~~~~~ 540 (560)
+++..
T Consensus 460 ~~~~~ 464 (474)
T 4h7n_A 460 LIKTN 464 (474)
T ss_dssp EEECS
T ss_pred EECCC
Confidence 98754
No 36
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=100.00 E-value=1.6e-79 Score=671.65 Aligned_cols=400 Identities=16% Similarity=0.172 Sum_probs=339.5
Q ss_pred hhhhh-cCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 008588 112 IIKVL-EGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 190 (560)
Q Consensus 112 i~~~~-~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~ 190 (560)
+.++. +|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 55 ~~nP~~t~~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 128 (516)
T 1uzb_A 55 SLNPSAPSEVVGTTAKAG------KAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNW 128 (516)
T ss_dssp EEETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred EECCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 45677 588888888777 89999999999999999999999999999999999999999999999887765442
Q ss_pred hhchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHH
Q 008588 191 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 267 (560)
Q Consensus 191 ~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 267 (560)
.++. .|+...++.++++++..+ ..+...+... ..+...+++|+|+|||++|+|| ||+ +.+++++
T Consensus 129 ----~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a 195 (516)
T 1uzb_A 129 ----VEAS--------ADVAEAIDFIEYYARAALRYRYPAVEVVP-YPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIV 195 (516)
T ss_dssp ----HHHH--------HHHHHHHHHHHHHHHHHGGGCSSCCCCCC-CTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHH
T ss_pred ----HHHH--------HHHHHHHHHHHHHHHHHHHhcCCcccccC-CCCceEEEEEeccceEEEECCCccHHHHHHHHHH
Confidence 2221 356667777777764332 2222211011 1245668899999999999998 695 6789999
Q ss_pred HHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHh
Q 008588 268 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 345 (560)
Q Consensus 268 ~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~ 345 (560)
|||++||+||+|||+.||+|+.+|++++++ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|+++
T Consensus 196 ~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~I~FTGS~~~G~~i~~~ 271 (516)
T 1uzb_A 196 GPVAVGNTVIAKPAEDAVVVGAKVFEIFHE----AGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEA 271 (516)
T ss_dssp HHHHTTCEEEEECCGGGHHHHHHHHHHHHH----HTCCTTSEEECCCSSSHHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCHHHHHHHHHHHHH----hCCCcCeEEEEeCCCchhhhhhhcCCCcCEEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999987 6 99999999996 67788888889999999999999999999876
Q ss_pred c---------CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC
Q 008588 346 T---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 415 (560)
Q Consensus 346 a---------~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~ 415 (560)
| .||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 272 aa~~~~~~~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~ 350 (516)
T 1uzb_A 272 AGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAY-EPVLERVLKRAERLS 350 (516)
T ss_dssp HTSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHTTCC
T ss_pred hhhccccccccceeEEecCCccceeECCCCCHHHHHHHHHHHHHhCCCCccccCcEEEEchHHH-HHHHHHHHHHHHhcc
Confidence 5 38999999999999999999999999999999999987 999999999999999 699999999987643
Q ss_pred C--------------------------------eE-ecCcc--ccccc--c-C-----CCCCcccccccCceEEEEEeCC
Q 008588 416 V--------------------------------GL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 452 (560)
Q Consensus 416 ~--------------------------------~~-~g~~~--~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~ 452 (560)
+ ++ +|+.. ..++| | | ++|++++||+||||++|++|+|
T Consensus 351 ~G~p~~~~~~Gpli~~~~~~~v~~~i~~a~~~G~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 430 (516)
T 1uzb_A 351 VGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKD 430 (516)
T ss_dssp BSCGGGCCSBCCCSCHHHHHHHHHHHHHHTTTSEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEESS
T ss_pred CCCCccccccCCCCCHHHHHHHHHHHHHHHHCCCEEECCccCCCCCcEECCEEEECCCCCCHhhhccccCceEEEEEeCC
Confidence 1 22 35543 12433 5 3 3689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCc--CCCCccCCccceeccccCcccccccchhcce
Q 008588 453 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLL 530 (560)
Q Consensus 453 ~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~--~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft 530 (560)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+|. +++|++++++||
T Consensus 431 ~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~g~~~l~~f~ 507 (516)
T 1uzb_A 431 FAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNA---KTGALDYLRLFL 507 (516)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCSGGGBSCC---CBTSHHHHHTTE
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCEeEEEEeCCCCCCCCCCCCCCCcCcCCCCC---ccchHHHHHHcC
Confidence 99999999999999999999999999999999999999999986543 4568999999998762 245889999999
Q ss_pred EEEEEEEc
Q 008588 531 TTRWILRG 538 (560)
Q Consensus 531 ~~K~v~~~ 538 (560)
+.|+|+++
T Consensus 508 ~~k~v~~~ 515 (516)
T 1uzb_A 508 EMKAVAER 515 (516)
T ss_dssp EEEEEEEE
T ss_pred CeeEEEec
Confidence 99999874
No 37
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=100.00 E-value=4.6e-80 Score=672.28 Aligned_cols=395 Identities=16% Similarity=0.169 Sum_probs=335.0
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++|+++|++||+.|++++..+|.++|++++++|++|.++|++++++|++++.
T Consensus 45 v~nP~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 117 (497)
T 3i44_A 45 VIDPSTEEACAVISLGS------TRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPI- 117 (497)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 45678899999988777 89999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccccccccccccccCCCeeEEEe-ecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKT-SCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++.. .|+...++.++++++..+.. ..+. ....+...+++ |+|+|||++|+|| ||. +.+++++|
T Consensus 118 ---~~a~~-------~ev~~~~~~~~~~a~~~~~~--~~~~-~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 184 (497)
T 3i44_A 118 ---DMALN-------AQTATGSSHIRNFIKAYKEF--SFQE-ALIEGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVIP 184 (497)
T ss_dssp ---HHHHH-------THHHHHHHHHHHHHHHHHHC--CSEE-ESSTTCSSCEEEEEECCEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHHHH-------HHHHHHHHHHHHHHHHhhcc--cccc-cccCCceeEEEeecCceEEEEECCCcchHHHHHHHHHH
Confidence 22211 35566666666665422110 0010 00113334667 9999999999998 795 57899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+|||+.||+|+.++++++.+ + ||+|+||+|++ +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 185 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~hp~v~~I~FTGS~~~G~~i~~~a 260 (497)
T 3i44_A 185 ALLAGCTMVLKPSEIAPLSAMLFAEILDE----AALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKDISKNA 260 (497)
T ss_dssp HHHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCcccHHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999987 7 99999999996 667888888899999999999999999999887
Q ss_pred C---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC------
Q 008588 347 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 416 (560)
Q Consensus 347 ~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~------ 416 (560)
. ||++||||||||+||++||| |.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 261 a~~~k~v~lElGGk~p~IV~~dAD-~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~~~ 338 (497)
T 3i44_A 261 SNTLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFYNSGQSCNAPTRMLVEQAIY-DKAIKTAKDIAEKTQVGPGHQT 338 (497)
T ss_dssp HTTTCEEEEECCCCCEEEECTTSC-TTHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHHCCBCCTTSC
T ss_pred hhcCCceeeccCCCCceEECCChh-HHHHHHHHHHHHhcCCCCcccCCEEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 3 99999999999999999999 9999999999999987 999999999999999 6999999999886532
Q ss_pred ----------------------------eE-ecCc-cc----cccc--c-C-----CCCCcccccccCceEEEEEeCCHH
Q 008588 417 ----------------------------GL-FGGP-RA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 454 (560)
Q Consensus 417 ----------------------------~~-~g~~-~~----~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 454 (560)
++ +|+. +. .++| | | ++|++++||+||||++|++|+|+|
T Consensus 339 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 418 (497)
T 3i44_A 339 GNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTED 418 (497)
T ss_dssp SSCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCcCCCCcEECCEEEEeCCCCCHHHcCcccCceEEEEecCCHH
Confidence 22 3442 21 2333 5 2 368999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEE
Q 008588 455 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 534 (560)
Q Consensus 455 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~ 534 (560)
|||+++|+++|||++||||+|.++++++++++++|+|+||. ....+..||||.+.||+| +++|++|+++||+.|+
T Consensus 419 eAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~-~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~t~~K~ 493 (497)
T 3i44_A 419 EAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVNG-HELPGGSYFGGVKFSGRA----REGGLWGIKEFLDTKA 493 (497)
T ss_dssp HHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEETT-CCCCTTCCBCCSGGGCCC----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCC----ccchHHHHHHhcceeE
Confidence 99999999999999999999999999999999999999995 445677899999999986 3679999999999999
Q ss_pred EEE
Q 008588 535 ILR 537 (560)
Q Consensus 535 v~~ 537 (560)
|+.
T Consensus 494 v~~ 496 (497)
T 3i44_A 494 ISY 496 (497)
T ss_dssp ESC
T ss_pred EEe
Confidence 864
No 38
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=100.00 E-value=7.7e-80 Score=667.01 Aligned_cols=396 Identities=15% Similarity=0.205 Sum_probs=339.6
Q ss_pred hhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 008588 113 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 192 (560)
Q Consensus 113 ~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~ 192 (560)
.++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 12 ~~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 83 (462)
T 3etf_A 12 VNPATGQTLAAMPWAN------AQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPI-- 83 (462)
T ss_dssp ECTTTCCEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3567889899887777 89999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHHH
Q 008588 193 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 269 (560)
Q Consensus 193 g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 269 (560)
.++ ..|+..+++.++++++..+ ..+.. +.. ..+...+++|+|+|||++|+|| ||. +.++++++|
T Consensus 84 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 150 (462)
T 3etf_A 84 --KQA--------RAEVTKSAALCDWYAEHGPAMLNPE-PTL--VENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPI 150 (462)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHHHHTSCE-ECS--SGGGCEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHhHHHhcCCc-ccC--CCCceeEEEeecCcEEEEECCCchHHHHHHHHHHHH
Confidence 122 2356667777777664332 12222 111 1234578899999999999998 785 678999999
Q ss_pred HHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 008588 270 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 346 (560)
Q Consensus 270 LaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a-- 346 (560)
|++||+||+|||+.||+|+.++++++.+ + +|+|+||+|+++.+.++.|..||+||+|+||||+++|+.|++.+
T Consensus 151 LaaGN~VvlKps~~tp~~~~~l~~~l~~----aglP~gv~~vv~g~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~aa~ 226 (462)
T 3etf_A 151 LLAGNSYLLKHAPNVTGCAQMIARILAE----AGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGA 226 (462)
T ss_dssp HHTTCEEEEECCTTCHHHHHHHHHHHHH----TTCCBTTEEECCCCHHHHHHHHTSTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HhcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcCeEEEEECCHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHhc
Confidence 9999999999999999999999999987 6 99999999997556667777899999999999999999999887
Q ss_pred -CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC---------
Q 008588 347 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 415 (560)
Q Consensus 347 -~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~--------- 415 (560)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 227 ~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~ 305 (462)
T 3etf_A 227 ALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIA-QAFTDRFVAAAAALKMGDPLVEEN 305 (462)
T ss_dssp TTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTSTTC
T ss_pred cCCceEEEcCCCCccEECCCCCHHHHHHHHHHHHHhcCCCcccCCcEEEEehhHH-HHHHHHHHHHHHhhcCCCCccccC
Confidence 39999999999999999999999999999999999987 999999999999999 699999999988652
Q ss_pred -------------------------CeE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHHH
Q 008588 416 -------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 459 (560)
Q Consensus 416 -------------------------~~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 459 (560)
+++ +|+... .++| | | ++|++++||+||||++|++|+|+||||++
T Consensus 306 ~~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 385 (462)
T 3etf_A 306 DLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALAL 385 (462)
T ss_dssp SBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCcEEeeEEEECCCCCChhhcCceeCcEEEEEEcCCHHHHHHH
Confidence 122 244321 2333 5 2 36889999999999999999999999999
Q ss_pred HHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEEEEEc
Q 008588 460 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 538 (560)
Q Consensus 460 aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~ 538 (560)
+|+++|||++||||+|.++++++++++++|+|+||++.......||||.++||+|. ++|++|+++||+.|+|+++
T Consensus 386 an~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G~----~~g~~g~~~~~~~k~v~~~ 460 (462)
T 3etf_A 386 ANDSEFGLSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFGR----ELSHFGLHEFCNVQTVWKN 460 (462)
T ss_dssp HHCSSCCSCEEEECSCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCSGGGEECC----BSHHHHHHTTEEEEEEEEC
T ss_pred HhCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcCCCCCCc----cchHHHHHHHhceeEEEEe
Confidence 99999999999999999999999999999999999987677789999999999873 5799999999999999875
No 39
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=100.00 E-value=1.4e-79 Score=666.58 Aligned_cols=397 Identities=18% Similarity=0.183 Sum_probs=344.4
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 22 ~~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 94 (475)
T 1euh_A 22 IYEPASGAELGSVPAMS------TEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGY- 94 (475)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 34677899999988877 88999999999999999999999999999999999999999999999987775442
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCC----eeE-EEeecceEEEEEEcCC-Chh-hHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADG----LIL-EKTSCPLGVLLIVFES-RPD-ALV 263 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~-~~~~~PlGVV~~I~p~-~P~-~~~ 263 (560)
.++ ..|+..+++.++++++..+ ..+...+.. . .+ ... +++|+|+|||++|+|| ||. +.+
T Consensus 95 ---~ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~ 161 (475)
T 1euh_A 95 ---KSA--------VSEVVRTAEIINYAAEEGLRMEGEVLEGG-S-FEAASKKKIAVVRREPVGLVLAISPFNYPVNLAG 161 (475)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEEEGG-G-TCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC-C-CCccccceeeEEEEeccceEEEECCCCchHHHHH
Confidence 122 2477888888888876443 234332211 1 23 355 8899999999999998 785 568
Q ss_pred HHHHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHH
Q 008588 264 QIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQ 341 (560)
Q Consensus 264 ~~~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~ 341 (560)
++++|||++||+||+|||+.||+|+.++++++.+ + +|+|+||+|++ +.++++.|..||+||+|+||||+++|+.
T Consensus 162 ~~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~ 237 (475)
T 1euh_A 162 SKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAE----AGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGER 237 (475)
T ss_dssp HHHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHH----HTCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHHhCCCcCEEEEECchHHHHH
Confidence 9999999999999999999999999999999987 6 99999999996 5667888888999999999999999999
Q ss_pred HHHhc-CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC----
Q 008588 342 IKEST-KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 415 (560)
Q Consensus 342 i~~~a-~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~---- 415 (560)
|++++ .||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 238 i~~~aa~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p 316 (475)
T 1euh_A 238 IGKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVA-DELVEKIREKVLALTIGNP 316 (475)
T ss_dssp HHHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHTSCBSCG
T ss_pred HHHhcCCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCCCCcEEEEehhHH-HHHHHHHHHHHHhccCCCc
Confidence 99988 49999999999999999999999999999999999987 999999999999999 699999999987653
Q ss_pred -----------------------------CeEe-cCccccccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHH
Q 008588 416 -----------------------------VGLF-GGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 457 (560)
Q Consensus 416 -----------------------------~~~~-g~~~~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi 457 (560)
+++. ||.. .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 317 ~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~-~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~eai 395 (475)
T 1euh_A 317 EDDADITPLIDTKSADYVEGLINDANDKGATALTEIKR-EGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAI 395 (475)
T ss_dssp GGTCSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCE-ETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHHHH
T ss_pred cccCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCceeCCEEEeCCCCcCHHHcCccccceEEEEecCCHHHHH
Confidence 2222 3332 2333 5 2 368899999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcC-CcCcCCCCccCCccceeccccCcccccccchhcceEEEEEE
Q 008588 458 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNA-STRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 536 (560)
Q Consensus 458 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~-~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~ 536 (560)
+++|+++|||++||||+|.++++++++++++|+|+||+ +....+.+||||.++||+| +++|++|+++||+.|+|+
T Consensus 396 ~~an~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~k~SG~G----~~~g~~~~~~~~~~k~v~ 471 (475)
T 1euh_A 396 EISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAG----IQGVKYSIEAMTTVKSVV 471 (475)
T ss_dssp HHHHHSSEESEEEEECSCHHHHHHHHHHSCSSEEEESSCCCCCSTTSCBCCEETTEES----CBSHHHHHHHTEEEEEEE
T ss_pred HHHhCCCCCeeEEEEeCCHHHHHHHHHhCCEeeEEECCCCCCCCCCCCcCCCCCCCcC----CCccHHHHHHhCCeeEEE
Confidence 99999999999999999999999999999999999999 7666678999999999987 367999999999999998
Q ss_pred Ec
Q 008588 537 RG 538 (560)
Q Consensus 537 ~~ 538 (560)
++
T Consensus 472 ~~ 473 (475)
T 1euh_A 472 FD 473 (475)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 40
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.5e-79 Score=670.83 Aligned_cols=402 Identities=17% Similarity=0.172 Sum_probs=331.8
Q ss_pred hhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 008588 113 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 192 (560)
Q Consensus 113 ~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~ 192 (560)
.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 33 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 104 (508)
T 3r64_A 33 INPYDDSVIAESKQAS------IADVDAAYEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTR-- 104 (508)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH--
Confidence 4567899999988777 89999999999999999999999999999999999999999999999876654432
Q ss_pred chhHHHHHHhhCChhHHHHHHHHHHHHhcccccccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHHHH
Q 008588 193 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 270 (560)
Q Consensus 193 g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 270 (560)
.++ ..|+..+++.++++++..+......+.. ...+...+++|+|+|||++|+|| ||. +.++++++||
T Consensus 105 --~~a--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 173 (508)
T 3r64_A 105 --SKA--------NLEITLAGNITKESASFPGRVHGRISPS-NTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPAL 173 (508)
T ss_dssp --HHH--------HHHHHHHHHHHHHHTTSTTTCCEEEECC-SSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHhhhhcCccccc-CCCCceeEEEEecceEEEEECCCcchHHHHHHHHHHHH
Confidence 122 2378889999999987654322232211 12346678999999999999998 785 5789999999
Q ss_pred HhCCeEEeeCCcchHHHH-HHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 008588 271 RSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 346 (560)
Q Consensus 271 aaGNtvVlKPse~tp~t~-~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a- 346 (560)
++||+||+|||+.||+|+ .++++++.+ + +|+|+||+|++ +.++++.|..||+||+|+||||+++||.|++.|
T Consensus 174 aaGN~VVlKps~~tp~t~~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~aa 249 (508)
T 3r64_A 174 AVGNAVVIKPASDTPVTGGVIPARIFEE----AGVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAI 249 (508)
T ss_dssp HTTCEEEEECCTTCHHHHTHHHHHHHHT----TTCCTTTEEECCCCTTTTHHHHHHCSSCSEEEEESCHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCChHHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHhhCCCccEEEEECCHHHHHHHHHHhh
Confidence 999999999999999999 999999886 7 99999999996 567788888899999999999999999998876
Q ss_pred ----CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC-----
Q 008588 347 ----KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV----- 416 (560)
Q Consensus 347 ----~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~----- 416 (560)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|++|||||+++| |+|+++|+++++++.+
T Consensus 250 ~~~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~ 328 (508)
T 3r64_A 250 NGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVH-DEFLEKFVEAVKNIPTGDPSA 328 (508)
T ss_dssp SSSSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTSTTCTTTCCSEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTS
T ss_pred cccCCCceEeecCCcCceEECCCCCHHHHHHHHHHHHHhcCCCCcccCcEEEEehhHH-HHHHHHHHHHHHhccCCCCcc
Confidence 38999999999999999999999999999999999987 999999999999999 6999999999987521
Q ss_pred -----------------------------eE-ecCccccccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHH
Q 008588 417 -----------------------------GL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 458 (560)
Q Consensus 417 -----------------------------~~-~g~~~~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 458 (560)
++ +||.+ .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 329 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~-~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 407 (508)
T 3r64_A 329 EGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI-EGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAE 407 (508)
T ss_dssp SSCCBCCCSCHHHHHHHHHHHHHHHTTTCEEEECCCE-ETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEESSHHHHHH
T ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEecCCC-CCcEEecEEEecCCCCChhhcccccCceEEEEEeCCHHHHHH
Confidence 22 23333 2333 5 3 3689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCc-CCCCccCCccceeccccCcccccccchhcceEEEEEEE
Q 008588 459 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 537 (560)
Q Consensus 459 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~-~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~ 537 (560)
++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+|+ ++|++|+++||+.|+|++
T Consensus 408 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~~~SG~Gr----~~G~~~l~~ft~~k~v~~ 483 (508)
T 3r64_A 408 LANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLGR----FNGDWAIEEFTTDRWIGI 483 (508)
T ss_dssp HHTSSSCCSCEEEECSCHHHHHHHHTTSCSSEEEECC--------------------C----CCHHHHHHHTEEEEEEEE
T ss_pred HHhCCCCCcEEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCcCCcCCCCCCc----CccHHHHHHhhceEEEEE
Confidence 99999999999999999999999999999999999998654 5678999999998873 569999999999999998
Q ss_pred cCceee
Q 008588 538 GNGHVV 543 (560)
Q Consensus 538 ~~~~~~ 543 (560)
+.+..+
T Consensus 484 ~~~~~~ 489 (508)
T 3r64_A 484 KRSAEN 489 (508)
T ss_dssp ECCSTT
T ss_pred ecccch
Confidence 776544
No 41
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-79 Score=668.45 Aligned_cols=400 Identities=17% Similarity=0.185 Sum_probs=325.8
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 26 ~~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 98 (485)
T 4dng_A 26 ILNPYDQSVITTASLAT------GKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTI- 98 (485)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 34678899999988887 89999999999999999999999999999999999999999999999877664432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.++++++..+.. +...+. ....+...+++|+|+|||++|+|| ||. +.++++++
T Consensus 99 ---~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 166 (485)
T 4dng_A 99 ---IKS--------TIELEQTIAILDEAMTYTGELGGVKEVP-SDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAP 166 (485)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHGGGCSCEECCC-CSSTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhCCeeccc-cCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHH
Confidence 122 236788888888887654432 332221 112346678999999999999998 785 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHH-HHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHh
Q 008588 269 AIRSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 345 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~-~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~ 345 (560)
||++||+||+|||+.||+++ .++++++.+ + +|+|+||+|++ ++++++.|..||+||+|+||||+++||.|++.
T Consensus 167 ALaaGN~VVlKps~~tp~~~~~~l~~~l~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~v~~v~fTGS~~~g~~i~~~ 242 (485)
T 4dng_A 167 AIALGNSVVHKPDIQTAISGGTIIAKAFEH----AGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEI 242 (485)
T ss_dssp HHHTTCEEEEECCGGGHHHHTHHHHHHHHH----TTCCTTSEEECCCCHHHHTTHHHHCSSCSEEEEEECHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCcChHHHHHHHHHHHHH----hCcCCCeEEEEeCCChhHHHHHHhCCCCCEEEEECCcHHHHHHHHH
Confidence 99999999999999999999 999999987 7 99999999996 55688888889999999999999999999988
Q ss_pred c---CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCC-----
Q 008588 346 T---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV----- 416 (560)
Q Consensus 346 a---~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~----- 416 (560)
+ .||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 243 aa~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~~~~ 321 (485)
T 4dng_A 243 AGRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVY-DEFVEKFTARVKQLPYGDQTD 321 (485)
T ss_dssp HHHHTCEEEEEECCCEEEEECTTSCHHHHHHHHHHHHTTCC----CCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTS
T ss_pred HhhhccchhhhcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCccccCCEEEEeHHHH-HHHHHHHHHHHHhccCCCCCc
Confidence 7 49999999999999999999999999999999999988 999999999999999 6999999999887532
Q ss_pred -----------------------------eE-ecCccccccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHH
Q 008588 417 -----------------------------GL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 458 (560)
Q Consensus 417 -----------------------------~~-~g~~~~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 458 (560)
++ +||.+ .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 322 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~-~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~~eAi~ 400 (485)
T 4dng_A 322 PKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKR-VGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAID 400 (485)
T ss_dssp TTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCE-ETTEECCEEEESCCTTSHHHHCCCCSSEEEEEEESSHHHHHH
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCC-CCcEECCEEEecCCCCChhhcCccccceEEEEEeCCHHHHHH
Confidence 11 23332 2333 5 2 3688999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCc-CCCCccCCccceeccccCcccccccchhcceEEEEEEE
Q 008588 459 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 537 (560)
Q Consensus 459 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~-~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~ 537 (560)
++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+|+ ++|++|+++||+.|+|++
T Consensus 401 ~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~~~SG~G~----~~g~~~l~~~t~~k~v~~ 476 (485)
T 4dng_A 401 MANDTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVGR----FGNPWVVEEFTVTKWISI 476 (485)
T ss_dssp HHHCSSCCSEEEEECSCHHHHHHHHTTSCSSEEEESCC--------------------------CHHHHHHHEEEEEEEE
T ss_pred HHhCCCCCceEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCCcCCcCCCCCCc----cchHHHHHHhhceEEEEE
Confidence 99999999999999999999999999999999999998654 5778999999998863 569999999999999988
Q ss_pred cCc
Q 008588 538 GNG 540 (560)
Q Consensus 538 ~~~ 540 (560)
+..
T Consensus 477 ~~~ 479 (485)
T 4dng_A 477 QKQ 479 (485)
T ss_dssp EC-
T ss_pred ecC
Confidence 654
No 42
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=5.6e-79 Score=663.27 Aligned_cols=400 Identities=15% Similarity=0.144 Sum_probs=342.1
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 25 ~~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 97 (486)
T 1t90_A 25 VVNPATKEVLCQVPIST------KEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNT- 97 (486)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 34677899999988777 88999999999999999999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhccccc-ccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++ ..|+..+++.+++++.+.+. .++..+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 98 ---~~a--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ 164 (486)
T 1t90_A 98 ---KEA--------LGEVGRGIENVEFAAGAPSLMMGDSLASI--ATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPM 164 (486)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHTTHHHHHCEEEEEEE--ETTEEEEEEEEECSEEEEECCSSCTTHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEecccCEEEEECCCchhHHHHHHHHHH
Confidence 122 24677888888887754332 23322211 1344568889999999999998 695 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a- 346 (560)
||++||+||+|||+.||+|+.++++++++ + ||+|+||+|+++.++++.|..||+||+|+||||+++|+.|+++|
T Consensus 165 ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~I~fTGS~~~g~~i~~~aa 240 (486)
T 1t90_A 165 AIALGNTFILKPSERTPLLTEKLVELFEK----AGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGS 240 (486)
T ss_dssp HHHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCCSHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCEEEEEECCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHh
Confidence 99999999999999999999999999987 7 99999999997556777788899999999999999999999887
Q ss_pred --CCCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccce-EEEeCccCCcchHHHHHHHHHhcCC------
Q 008588 347 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMET-LLVHKDLACNGALNELVVELQHEGV------ 416 (560)
Q Consensus 347 --~~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~r-v~V~~~i~dd~f~~~l~~~~~~~~~------ 416 (560)
.||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++| +|||++ | |+|+++|+++++++.+
T Consensus 241 ~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvv~v~~~-~-d~f~~~l~~~~~~~~vG~~~~~ 318 (486)
T 1t90_A 241 ENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGI-A-DEFMAKLQEKVADIKIGNGLDD 318 (486)
T ss_dssp HTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHH-H-HHHHHHHHHHHTTCCBSCTTST
T ss_pred ccCCcEEeccCCCCcEEECCCCCHHHHHHHHHHHHHhCCCCCcccCCeeEEecCC-H-HHHHHHHHHHHHhcccCCCCcc
Confidence 59999999999999999999999999999999999987 9999999 999999 9 6999999998876531
Q ss_pred ----------------------------eE-ecCcc---ccccc--c-C-----CCCCcccccccCceEEEEEeCCHHHH
Q 008588 417 ----------------------------GL-FGGPR---ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAA 456 (560)
Q Consensus 417 ----------------------------~~-~g~~~---~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~deA 456 (560)
++ +|+.+ ..++| | | ++|++++||+||||++|++|+|+|||
T Consensus 319 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPvl~v~~~~~~~ea 398 (486)
T 1t90_A 319 GVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEA 398 (486)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECSSSSCCSSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCCEECCEEEeCCCCCCHhhcCcccCceEEEEEeCCHHHH
Confidence 22 24432 12333 5 3 35889999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCc-CCCCccCCccceeccccCcccccccchhcceEEEEE
Q 008588 457 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 535 (560)
Q Consensus 457 i~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~-~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v 535 (560)
|+++|+++|||++||||+|.++++++++++++|+|+||++... .+.+||||.++||+|. ++++|++|+++||+.|+|
T Consensus 399 i~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G~--~~~~g~~g~~~~~~~k~v 476 (486)
T 1t90_A 399 IEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGT--LHANGKDSVDFYTRKKVV 476 (486)
T ss_dssp HHHHHHSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCCTTSCCCCEETTEESS--SCSSHHHHHHHTEEEEEE
T ss_pred HHHHhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCcCCCCcCCCCC--CccchHHHHHHhhceEEE
Confidence 9999999999999999999999999999999999999986543 3568999999999863 246799999999999999
Q ss_pred EEcC
Q 008588 536 LRGN 539 (560)
Q Consensus 536 ~~~~ 539 (560)
++++
T Consensus 477 ~~~~ 480 (486)
T 1t90_A 477 TARY 480 (486)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8754
No 43
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-78 Score=659.63 Aligned_cols=392 Identities=16% Similarity=0.166 Sum_probs=317.5
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
+.++.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 27 ~~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~- 99 (478)
T 3ty7_A 27 VINPATEEVIGKVAKGN------KADVDKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPL- 99 (478)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred eECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 34677899999988877 89999999999999999999999999999999999999999999999887765442
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHH
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 268 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 268 (560)
.++. ..|+...++.++++++..+ ..+... +...+++++|+|||++|+|| ||. +.++++++
T Consensus 100 ---~ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 162 (478)
T 3ty7_A 100 ---SLSE-------RVHYQMGLNHFVAARDALDNYEFEER-------RGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAA 162 (478)
T ss_dssp ---HHHH-------HTHHHHHHHHHHHHHHHHHHCCSEEE-------ETTEEEEEEECCCEEEECCSSSTTHHHHHHHHH
T ss_pred ---HHHh-------HHHHHHHHHHHHHHHHHHHHhhcccC-------CccceEEecCceEEEEECCCcchHHHHHHHHHH
Confidence 2221 1356666777777664332 112110 12357889999999999998 785 67899999
Q ss_pred HHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc
Q 008588 269 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 346 (560)
Q Consensus 269 ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a 346 (560)
||++||+||+|||+.||+|+.++++++.+ + +|+|+||+|++ +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 163 ALaaGN~VVlKps~~tp~t~~~l~~~~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~v~fTGS~~~G~~i~~~a 238 (478)
T 3ty7_A 163 AFAAGSPVVLKPSEETPFAAVILAEIFDK----VGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKA 238 (478)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCCCTTTTHHHHHHCTTCCEEEECSCHHHHCC--CST
T ss_pred HHHcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEECCChHHHHHHHhCCCcCEEEEECcHHHHHHHHHHH
Confidence 99999999999999999999999999987 6 99999999996 667888888899999999999999999999887
Q ss_pred C---CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC-------
Q 008588 347 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 415 (560)
Q Consensus 347 ~---~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~------- 415 (560)
. ||++||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 239 a~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 317 (478)
T 3ty7_A 239 AKDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIK-DAFLAELKEQFSQVRVGNPRED 317 (478)
T ss_dssp TTTTCEEECCCCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred HhcCCceEEecCCCCCcccCCCCCHHHHHHHHHHHHHHhCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 3 9999999999999999999999999999999999987 999999999999999 699999999988642
Q ss_pred ---------------------------CeE-ecCc-c----ccccc--c-C-----CCCCcccccccCceEEEEEeCCHH
Q 008588 416 ---------------------------VGL-FGGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 454 (560)
Q Consensus 416 ---------------------------~~~-~g~~-~----~~~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~~~d 454 (560)
+++ +|+. . ..++| | | ++|++++||+||||++|++|+|+|
T Consensus 318 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~ 397 (478)
T 3ty7_A 318 GTQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLD 397 (478)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEecCccCccccCCCceeCCEEEecCCCCCcccCceeECceeEEEecCCHH
Confidence 233 3442 1 12333 5 2 368899999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCcCCCCccCCccceeccccCcccccccchhcceEEEE
Q 008588 455 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 534 (560)
Q Consensus 455 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~ 534 (560)
|||+++|+++|||++||||+|.++++++++++++|+|+||+ ....+..||||.++||+|. ++|++|+++||+.|+
T Consensus 398 eAi~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~-~~~~~~~PfGG~k~SG~G~----~~G~~~l~~~t~~k~ 472 (478)
T 3ty7_A 398 EAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINE-AGRKPDLPFGGYKQSGLGR----EWGDYGIEEFLEVKS 472 (478)
T ss_dssp HHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCSSEEEETT-CC--------------------------CCGGGEEEEE
T ss_pred HHHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCCc----cchHHHHHHhcCeEE
Confidence 99999999999999999999999999999999999999999 4455678999999999873 579999999999999
Q ss_pred EEE
Q 008588 535 ILR 537 (560)
Q Consensus 535 v~~ 537 (560)
|+.
T Consensus 473 v~~ 475 (478)
T 3ty7_A 473 IAG 475 (478)
T ss_dssp EET
T ss_pred EEE
Confidence 873
No 44
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=100.00 E-value=5.4e-78 Score=659.20 Aligned_cols=400 Identities=15% Similarity=0.147 Sum_probs=333.9
Q ss_pred hhhhcCCce-eeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 008588 113 IKVLEGKRV-GTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 191 (560)
Q Consensus 113 ~~~~~G~~~-GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~ 191 (560)
.++.+|+.+ +++...+ .+|+++++++|++||+.|+++|..+|.++|++++++|++|.++|++++++|++++..
T Consensus 12 ~nP~tg~~i~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 85 (510)
T 1ez0_A 12 TNAFTGEALPLAFPVHT------EVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEV 85 (510)
T ss_dssp ECTTTSSEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred ECCCCCCEEEEEECCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 356789999 6888777 899999999999999999999999999999999999999999999999887755432
Q ss_pred hchhHHHHHHhhCChhHHHHHHHHHHHHhcccc---cccccc----cccccCCC-eeEEEeecceEEEEEEcCC-Chhh-
Q 008588 192 AGYAKSLVSRLALKPGKISSLAKSIRILADMEE---PIGQIL----KRTELADG-LILEKTSCPLGVLLIVFES-RPDA- 261 (560)
Q Consensus 192 ~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~-~~~~~~~~PlGVV~~I~p~-~P~~- 261 (560)
++. .|+...++.++++++..+ ..+... +.. .+.+ ...+++|+|+|||++|+|| ||+.
T Consensus 86 ----~a~--------~Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 152 (510)
T 1ez0_A 86 ----RLT--------GEIARTANQLRLFADVVNSGSYHQAILDTPNPTR-APLPKPDIRRQQIALGPVAVFGASNFPLAF 152 (510)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHHTGGGCEEEECCBTTC-SSSCBCCEEEEEEECSCEEEECCSSCTTTT
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHhCcccccccccccccc-CCCCCCCceEEEecCcEEEEECCccchhhh
Confidence 221 244455555555543221 111111 100 0111 1357889999999999998 7964
Q ss_pred H--HHHHHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHH
Q 008588 262 L--VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 337 (560)
Q Consensus 262 ~--~~~~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~ 337 (560)
+ .++++|||++||+||+|||+.||+|+.++++++.+++.++ +|+|+||+|+| +.++++.|..||+||+|+||||++
T Consensus 153 ~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~ 232 (510)
T 1ez0_A 153 SAAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVG 232 (510)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhHHHHHHHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHcCCCCCEEEEeCcHH
Confidence 3 4999999999999999999999999999999999888888 99999999996 677888888899999999999999
Q ss_pred HHHHHHHhcC-----CCEEEecCccceEEEcCCCCHH--HHHHHHHhhcCCCCC-cccccceEEEeCc-cCCcchHHHHH
Q 008588 338 LVSQIKESTK-----IPVLGHADGICHVYVDKSANLD--VAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELV 408 (560)
Q Consensus 338 ~G~~i~~~a~-----~~~~lElGGk~p~iV~~dADld--~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~-i~dd~f~~~l~ 408 (560)
+||.|+++|. ||++||||||||+||++|||+| .|++.+++|+|.|+| +|+|++|+|||++ +| |+|+++|+
T Consensus 233 ~G~~i~~~aa~~l~~~pv~lELGGk~p~iV~~dADl~~~~aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~ 311 (510)
T 1ez0_A 233 GGRALFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPET-QAFIETAQ 311 (510)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCEEEECHHHHHHCTTHHHHHHHHHTGGGGCCTTCCCEEEEESSHHH-HHHHHHHH
T ss_pred HHHHHHHHhhccCCCccEEEECCCCCeEEEeCCCCccHHHHHHHHHHHHHcCCCCCcCCCCEEEEeCCccH-HHHHHHHH
Confidence 9999998873 9999999999999999999999 999999999999987 9999999999999 99 69999999
Q ss_pred HHHHhc-------------------------CCeEe-cCccccccc--c-C-----CC---CCcccccccCceEEEEEeC
Q 008588 409 VELQHE-------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEIVD 451 (560)
Q Consensus 409 ~~~~~~-------------------------~~~~~-g~~~~~~~~--p-v-----~~---~~~~~eE~FGPVl~v~~~~ 451 (560)
++++++ |+++. |+. . ++| | | ++ |++++||+||||++|++|+
T Consensus 312 ~~~~~~~~gp~~~~~~~~~~~~~v~~~~~~~Ga~~~~gg~-~-g~~~~Ptvl~~~~~~~~~~~i~~eEiFGPVl~v~~~~ 389 (510)
T 1ez0_A 312 SLIRQQSPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQA-E-SPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCE 389 (510)
T ss_dssp HHHHHCCCBCCSSHHHHHHHHHHHHHHHTSTTEEEEECCC-C-TTSBCCEEEEEEHHHHHHCGGGGSCCCSSEEEEEEES
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEecCC-C-CCEecCEEEEecCCccccCHHHcCCccCCeEEEEEeC
Confidence 988765 23333 443 2 443 5 3 23 8999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEecCH--HHHHHHHhhc--CeeeEEEcCCcC---cCCCCccCC-ccceeccccCcccccc
Q 008588 452 DVRAAIDHIHQHGSAHTDCIVAEDQ--KVAETFLCQV--DSAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARGP 523 (560)
Q Consensus 452 ~~deAi~~aN~~~~GL~a~I~t~d~--~~a~~~~~~l--~~G~V~VN~~~~---~~~~~pfG~-g~~sG~~~~~~~~~G~ 523 (560)
|+||||+++|+++|||++||||+|. ++++++++++ ++|+|+||++.. ..+..|||| +++||+|+. +++|+
T Consensus 390 ~~deai~~aN~~~~gLaa~v~t~d~~~~~a~~~~~~l~~~aG~V~iN~~~~~~~~~~~~pfGG~~~~sG~g~~--~~~G~ 467 (510)
T 1ez0_A 390 NVADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSAS--TSVGA 467 (510)
T ss_dssp SHHHHHHHHHTCCCEEEEEEECCGGGHHHHHHHHHHHHTTEEEEEESSCSSCCCCSSSCCCCCSTTSCSCSSC--CSSSG
T ss_pred CHHHHHHHHhcCCCCeEEEEEccCcCHHHHHHHHHHHhhcccEEEECCCCccCccCCCCCCCCCCCCcCCCCC--CCccH
Confidence 9999999999999999999999987 8999999999 899999998754 346789998 678887642 34699
Q ss_pred cchhcceEEEEEE
Q 008588 524 VGVEGLLTTRWIL 536 (560)
Q Consensus 524 ~gl~~ft~~K~v~ 536 (560)
+|+++|++.|++.
T Consensus 468 ~gl~~~~~~k~~~ 480 (510)
T 1ez0_A 468 EAIHRWLRPVAYQ 480 (510)
T ss_dssp GGGGGGEEEEEEE
T ss_pred HHHHHhheEEEEc
Confidence 9999999998765
No 45
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.6e-78 Score=661.68 Aligned_cols=403 Identities=15% Similarity=0.100 Sum_probs=336.3
Q ss_pred hhhhhcCCcee-eEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 008588 112 IIKVLEGKRVG-TLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 190 (560)
Q Consensus 112 i~~~~~G~~~G-T~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~ 190 (560)
+.++.+|+.++ ++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 44 v~nP~tg~~i~~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 117 (528)
T 3v4c_A 44 TFASAPAHGPAHDFAVGT------VELVNRACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPE 117 (528)
T ss_dssp EEECCCSSSCCCEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ccCCCCCCEeeeEeCCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 66788899887 887777 89999999999999999999999999999999999999999999999887765542
Q ss_pred hhchhHHHHHHhhCChhHHHHHHHHHHHHhccccc---ccccc----cccccCCCeeEEEeecceEEEEEEcCC-Chhh-
Q 008588 191 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADGLILEKTSCPLGVLLIVFES-RPDA- 261 (560)
Q Consensus 191 ~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~~- 261 (560)
. ++. .|+...++.++++++..+. .+... +......+...+++|+|+|||++|+|| ||..
T Consensus 118 ~----~a~--------~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 185 (528)
T 3v4c_A 118 A----RLN--------GERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPLAF 185 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHHCGGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSSTTTT
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCCcceeEeeCCcEEEEECCCcchHHH
Confidence 1 221 2455555556655532211 11111 100001223467889999999999998 7964
Q ss_pred H--HHHHHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHH
Q 008588 262 L--VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 337 (560)
Q Consensus 262 ~--~~~~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~ 337 (560)
. .++++|||++||+||+|||+.||+|+.++++++.+++.++ ||+|+||+|++ +.++++.|..||+||+|+||||++
T Consensus 186 ~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~V~fTGS~~ 265 (528)
T 3v4c_A 186 STAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLA 265 (528)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCHHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhhhhhHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECChH
Confidence 2 3899999999999999999999999999999999988889 99999999996 657888888899999999999999
Q ss_pred HHHHHHHhcC-----CCEEEecCccceEEEcCCC---CHHHHHHHHHhhcCCCCC-cccccceEEEeCc-cCCcchHHHH
Q 008588 338 LVSQIKESTK-----IPVLGHADGICHVYVDKSA---NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNEL 407 (560)
Q Consensus 338 ~G~~i~~~a~-----~~~~lElGGk~p~iV~~dA---Dld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~-i~dd~f~~~l 407 (560)
+||.|++.+. ||+++|||||||+||++|| |+|.|++.+++|+|.|+| +|+|++|+|||++ || |+|+++|
T Consensus 266 ~G~~i~~~aa~~~~~~pv~lElGGk~p~iV~~dAd~~dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l 344 (528)
T 3v4c_A 266 GGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEGADA-DRFTTAA 344 (528)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHGGGGCCTTCCCEEEEESSHHH-HHHHHHH
T ss_pred HHHHHHHHHhhccCCCceEEecCCCCeEEECCCCChhhHHHHHHHHHHHHHhcCCCccccCcEEEEecccHH-HHHHHHH
Confidence 9999998773 8999999999999999999 889999999999999987 9999999999997 99 6999999
Q ss_pred HHHHHhc-------------------------CCeEe-cCccccccc--c-C-----CC---CCcccccccCceEEEEEe
Q 008588 408 VVELQHE-------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEIV 450 (560)
Q Consensus 408 ~~~~~~~-------------------------~~~~~-g~~~~~~~~--p-v-----~~---~~~~~eE~FGPVl~v~~~ 450 (560)
+++++++ |+++. ||.. .++| | | ++ |.+++||+||||++|++|
T Consensus 345 ~~~~~~~~~~~~~gp~~~~~~~~~v~~~~~~~Ga~v~~gG~~-~g~~~~PTvl~~~~~~~~~~~i~~eEiFGPVl~V~~~ 423 (528)
T 3v4c_A 345 VEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPLLATES-SGRDASPNLFETTGAQFLADHALGEEVFGPLGLVVRV 423 (528)
T ss_dssp HHHHHTCCCEECSCHHHHHHHHHHHHHHHTCTTCEEEECCCC-CTTEECCEEEEEEHHHHHHCGGGGCCCSSSEEEEEEE
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCEEEeCCCc-CCceeccEEEEecCcccccChhhcccccCCeEEEEec
Confidence 9988764 33333 4443 3443 6 3 23 799999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEec--CHHHHHHHHhhcC--eeeEEEcCCcC---cCCCCccCC-ccceeccccCccccc
Q 008588 451 DDVRAAIDHIHQHGSAHTDCIVAE--DQKVAETFLCQVD--SAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARG 522 (560)
Q Consensus 451 ~~~deAi~~aN~~~~GL~a~I~t~--d~~~a~~~~~~l~--~G~V~VN~~~~---~~~~~pfG~-g~~sG~~~~~~~~~G 522 (560)
+|+||||+++|+++|||++||||+ |.+++++|+++++ +|+|+||+.+. ..+.+|||| .+.||+| +.+.+|
T Consensus 424 ~~~deAi~~aN~~~~GL~a~v~t~d~d~~~a~~~a~~l~~~aG~V~vN~~~~~~~~~~~~pfGG~~~~Sg~g--r~~~~G 501 (528)
T 3v4c_A 424 GSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNF--GATSVG 501 (528)
T ss_dssp SSHHHHHHHHHHCCCEEEEEEECCGGGHHHHHHHHHHHHHHEEEEEESSCTTCCCCSTTCCCCCTTTTBSCT--TCCSSS
T ss_pred CCHHHHHHHHhcCCCCceEEEEcCCCCHHHHHHHHHHHhhcCcEEEEcCCCCCCccCCCCCCCCCCCCCCCC--CCCCCc
Confidence 999999999999999999999999 8999999999998 99999999654 246789998 8888876 333459
Q ss_pred ccchhcceEEEEEE
Q 008588 523 PVGVEGLLTTRWIL 536 (560)
Q Consensus 523 ~~gl~~ft~~K~v~ 536 (560)
++|+++|++.|++-
T Consensus 502 ~~gl~~~~~~k~~q 515 (528)
T 3v4c_A 502 TMSIRRFLRPVAYQ 515 (528)
T ss_dssp GGGGGGGEEEEEEE
T ss_pred HHHHHHhchhHHhh
Confidence 99999999999853
No 46
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.7e-76 Score=644.44 Aligned_cols=393 Identities=16% Similarity=0.116 Sum_probs=331.6
Q ss_pred hhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 008588 113 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 192 (560)
Q Consensus 113 ~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~ 192 (560)
.++.+|+.++++...+ .+|+++++++|++||+.|++++.++|.++|++++++|++|.++|++++++|++++.
T Consensus 25 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 96 (490)
T 3ju8_A 25 LDPVGQGVVWSGRGAD------ATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPL-- 96 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 3677899999988877 89999999999999999999999999999999999999999999999887765442
Q ss_pred chhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHHH
Q 008588 193 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 269 (560)
Q Consensus 193 g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 269 (560)
.++ ..|+..+++.++++++..+ ..+...+. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 97 --~ea--------~~ev~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 163 (490)
T 3ju8_A 97 --WES--------ATEVTSMVNKVAISVQAFRERTGEKSGP---LADATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPA 163 (490)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHHHHSCCEEEE---ETTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccc---CCCCeeeEEECCCCEEEEECCCcchHHHHHHHHHHH
Confidence 122 1356666666666654322 12222211 1123456679999999999998 785 578999999
Q ss_pred HHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHHHHhcC-
Q 008588 270 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK- 347 (560)
Q Consensus 270 LaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~- 347 (560)
|++||+||+|||+.||+|+.++++++.+ + +|+|++|+|+++.++++.|..||+||+|+||||+++||.|++++.
T Consensus 164 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~ 239 (490)
T 3ju8_A 164 LLAGNCVVFKPSELTPKVAELTLKAWIQ----AGLPAGVLNLVQGGRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGG 239 (490)
T ss_dssp HHHTCEEEEECCTTCHHHHHHHHHHHHH----TTCCTTTEEECCCSHHHHHHHHTCTTCSEEEEESCHHHHHHHHHHTTT
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHH----hCcCcCeEEEEeCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhhc
Confidence 9999999999999999999999999987 6 999999999986678888889999999999999999999998874
Q ss_pred --CCE-EEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCcc-CCcchHHHHHHHHHhcCC------
Q 008588 348 --IPV-LGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDL-ACNGALNELVVELQHEGV------ 416 (560)
Q Consensus 348 --~~~-~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i-~dd~f~~~l~~~~~~~~~------ 416 (560)
+|+ +||||||||+||++|||||.|++.+++|+|.|+| +|+|++|+|||+++ | |+|+++|+++++++.+
T Consensus 240 ~~~~v~~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~~G~~~~~ 318 (490)
T 3ju8_A 240 QPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWG-DALLARLVAVSATLRVGRFDEQ 318 (490)
T ss_dssp CTTSEEEEECCCCEEEEECCCSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEESSHHH-HHHHHHHHHHHHHCCBCCTTCS
T ss_pred cCCCcEEeecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCCEEEEECCccH-HHHHHHHHHHHHhccCCCCCCC
Confidence 898 7999999999999999999999999999999987 99999999999996 9 6999999999887532
Q ss_pred -----------------------------eE-ecCccc--cccc--c-C----CCCCcccccccCceEEEEEeCCHHHHH
Q 008588 417 -----------------------------GL-FGGPRA--SKLL--Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAI 457 (560)
Q Consensus 417 -----------------------------~~-~g~~~~--~~~~--p-v----~~~~~~~eE~FGPVl~v~~~~~~deAi 457 (560)
++ +|+.+. .++| | | ++|++++||+||||++|++|+|+||||
T Consensus 319 ~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl~v~~~~~i~~eEiFGPVl~v~~~~~~~eAi 398 (490)
T 3ju8_A 319 PAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILDVSAVAERPDEEFFGPLLQVIRYSDFAAAI 398 (490)
T ss_dssp SCCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCCCSTTSCCCCCEEEECTTCSSCCCCCCCSSEEEEEEESSHHHHH
T ss_pred CcCccccccCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCCEEccEEEEeCCCCccccccccccEEEEEEeCCHHHHH
Confidence 11 233221 2333 5 2 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCc-CCCCccCCccceeccccCcccccccchhcceEEEEEE
Q 008588 458 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 536 (560)
Q Consensus 458 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~-~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~ 536 (560)
+++|+++|||++||||+|.++++++++++++|+|+||+++.. ....||||.+.|| ..++++|++.|+|+
T Consensus 399 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~~~SG----------~~~~~~~~~~k~v~ 468 (490)
T 3ju8_A 399 REANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASG----------NHRPSAYYAADYCA 468 (490)
T ss_dssp HHHHCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSCSSCCCTTSEECCCGGGB----------SSCCEETTHHHHHE
T ss_pred HHHhcCCCCceEEEEcCCHHHHHHHHHhcCcceEEECCCcCCCCCCCCcCCccccc----------hhHHHhhheeEEEE
Confidence 999999999999999999999999999999999999997653 4678999776664 35789999999998
Q ss_pred EcCce
Q 008588 537 RGNGH 541 (560)
Q Consensus 537 ~~~~~ 541 (560)
+....
T Consensus 469 ~~~~~ 473 (490)
T 3ju8_A 469 YPVAS 473 (490)
T ss_dssp EEEEE
T ss_pred Eeccc
Confidence 86544
No 47
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=100.00 E-value=3.1e-75 Score=641.13 Aligned_cols=399 Identities=16% Similarity=0.172 Sum_probs=329.9
Q ss_pred hhhhc-CCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHc-HHHHHHHHHHHHHHHH
Q 008588 113 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEAN-ESLIKVENEADVAAAQ 190 (560)
Q Consensus 113 ~~~~~-G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~-~~el~~~~~~~~~~~~ 190 (560)
.++.+ ++.++++..++ .+||++|+++|++||+.|+++|.++|.++|++++++|+++ +++|+++++.|++++.
T Consensus 82 ~~P~~~~~~i~~~~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~~ 155 (563)
T 4e3x_A 82 LSPFNHAHKVAKFCYAD------KALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTV 155 (563)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCCH
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCCH
Confidence 34555 67788887777 8999999999999999999999999999999999999999 9999998876654432
Q ss_pred hhchhHHHHHHhhCChhHHHHHHHHHHHHhcccc-cccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHH
Q 008588 191 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 267 (560)
Q Consensus 191 ~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 267 (560)
.++..+ ++...++.++++++..+ ..+..... ...+...+.++.|+|||++|+|| ||. ...++++
T Consensus 156 ----~ea~~e-------~v~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~r~p~GVV~~I~PwNfP~~~~~~~~a 222 (563)
T 4e3x_A 156 ----IQAEID-------AAAELIDFFRFNAKFAVELEGEQPIS--VPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGA 222 (563)
T ss_dssp ----HHHHHH-------TTHHHHHHHHHHHHHHHHHTTCCCCC--CTTEEEEEECCBCSSEEEEECCSSCHHHHHHHHHH
T ss_pred ----HHHhHH-------HHHHHHHHHHHHHHHHHHhhCCCccC--CCCCcceEEEecCceEEEEECCchHHHHHHHHHHH
Confidence 232211 24455566666554322 11211111 11234456778889999999998 796 4579999
Q ss_pred HHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHh
Q 008588 268 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 345 (560)
Q Consensus 268 ~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~ 345 (560)
||| +||+||+|||+.||+++.++++++++ + ||+||||+|+| +.++++.|..||+|++|+||||+++|+.|+++
T Consensus 223 pAL-aGNtVVlKPs~~tp~sa~~l~~ll~e----AGlP~Gvvnvv~g~g~~~g~~L~~hp~v~~I~FTGSt~vG~~i~~~ 297 (563)
T 4e3x_A 223 PAL-MGNVVLWKPSDTAMLASYAVYRILRE----AGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQ 297 (563)
T ss_dssp HHH-TTCCEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTTCTTEEEEEEESCHHHHHHHHHH
T ss_pred Hhh-cCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999 69999999999999999999999987 6 99999999996 66788999999999999999999999999887
Q ss_pred cC---C------CEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC
Q 008588 346 TK---I------PVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 415 (560)
Q Consensus 346 a~---~------~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~ 415 (560)
++ | |+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 298 aa~~lk~~~~~prv~lElGGk~p~IV~~dADld~Aa~~iv~~~f~~~GQ~C~A~~rv~V~~si~-d~f~~~l~~~~~~l~ 376 (563)
T 4e3x_A 298 VAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLW-PQIKGRLLEEHSRIK 376 (563)
T ss_dssp HHHTTTTCSSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHTCC
T ss_pred HHhhCCccccCCceeccCCCCCceeeCCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEecchH-HHHHHHHHHHHHhcc
Confidence 73 5 499999999999999999999999999999999987 999999999999999 699999999998753
Q ss_pred C------------------------------------eE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEE
Q 008588 416 V------------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVE 448 (560)
Q Consensus 416 ~------------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~v~ 448 (560)
+ ++ .||... .++| | | ++|++++||+||||++|+
T Consensus 377 vGdp~~d~~~~~Gpli~~~~~~rv~~~i~~a~~~~ga~v~~GG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~ 456 (563)
T 4e3x_A 377 VGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVY 456 (563)
T ss_dssp BSCTTTCTTCSBCCCSCHHHHHHHHHHHHHHHHCTTEEEEECCCEECSSSCEECCEEEEESCTTCGGGTSCCCSSEEEEE
T ss_pred CCCcccCcCCccCCCcCHHHHHHHHHHHHHHhhcCCCEEEeCCccCCCCCcEecCEEEecCCCCChhhcCCCcCeEEEEE
Confidence 1 11 233221 2344 5 2 468999999999999999
Q ss_pred EeCC--HHHHHHHH-HhcCCCceeEEEecCHHHHHHHHhhcC--eeeEEEcCCcCc--CCCCccCCccceeccccCcccc
Q 008588 449 IVDD--VRAAIDHI-HQHGSAHTDCIVAEDQKVAETFLCQVD--SAAVFHNASTRF--CDGARFGLGAEVGISTSRIHAR 521 (560)
Q Consensus 449 ~~~~--~deAi~~a-N~~~~GL~a~I~t~d~~~a~~~~~~l~--~G~V~VN~~~~~--~~~~pfG~g~~sG~~~~~~~~~ 521 (560)
+|+| +||||+++ |+++|||+++|||+|.+++++++++++ +|+|+||+.+.. ....||||.+.||++. +.+
T Consensus 457 ~~~d~~~deAi~~ann~s~yGLta~V~t~d~~~~~~~~~~l~~~aG~v~IN~~~~~~~~~~~PFGG~k~SG~g~---~~~ 533 (563)
T 4e3x_A 457 VYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTND---KPG 533 (563)
T ss_dssp EECGGGHHHHHHHHHHSSSEESEEEEECSCHHHHHHHHHHTTTTCSEEEESSCSCCCCTTTSCCCCEETTBCCC---CTT
T ss_pred EECCCCHHHHHHHHHcCCCCCCEEEEEeCCHHHHHHHHHhhhcCeeEEEEcCCCCCCCcCCCCCCCccccCCCC---ccC
Confidence 9997 79999999 799999999999999999999999965 999999987543 3568999999988762 357
Q ss_pred cccchhcceEEEEEEEcC
Q 008588 522 GPVGVEGLLTTRWILRGN 539 (560)
Q Consensus 522 G~~gl~~ft~~K~v~~~~ 539 (560)
|++++++|++.|+|....
T Consensus 534 G~~~l~~~~~~k~v~~~~ 551 (563)
T 4e3x_A 534 GPHYILRWTSPQVIKETH 551 (563)
T ss_dssp STTGGGGGBCCEEEEEEC
T ss_pred CHHHHHHhCceEEEEEeC
Confidence 999999999999998764
No 48
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=100.00 E-value=1.2e-74 Score=669.19 Aligned_cols=401 Identities=17% Similarity=0.178 Sum_probs=342.9
Q ss_pred hhhhhc-CCceeeEEecCCCcccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 008588 112 IIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 190 (560)
Q Consensus 112 i~~~~~-G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~ 190 (560)
+.++.+ ++.+|++..++ .+||++|+++|++||+.|+++|.++|+++|++++++|++|.++|++++++|.+++.
T Consensus 549 v~nPa~~~~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~~ 622 (1026)
T 4f9i_A 549 TVNPNKPSEVLGQICQAG------TTEVGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQW 622 (1026)
T ss_dssp EEETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH
T ss_pred EeCCCCCCceEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 345665 77788888787 89999999999999999999999999999999999999999999999876654432
Q ss_pred hhchhHHHHHHhhCChhHHHHHHHHHHHHhcccccc-cccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHH
Q 008588 191 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 267 (560)
Q Consensus 191 ~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 267 (560)
.++ ..|+..+++.+++++...+.. +...+.. ..+...++.++|+|||++|+|| ||+ +..++++
T Consensus 623 ----~ea--------~~Ev~~aid~lr~~a~~~~~~~~~~~~~~--~~g~~~~~~~~PlGVV~~I~PwNfPl~i~~~~~a 688 (1026)
T 4f9i_A 623 ----DQA--------YADVTEAIDFLEYYAREMIRLGQPQRVGH--APGELNHYFYEPKGVAAVIAPWNFPLAISMGMAS 688 (1026)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHHHHTSCEEECC--CTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHH
T ss_pred ----hhH--------HHHHHHHHHHHHHHHHHHHHhcCCccccC--CCCccceeEeecCceEEEeCCCccHHHHHHHHHH
Confidence 122 246778888888887654322 2211110 2355677889999999999998 785 6789999
Q ss_pred HHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHh
Q 008588 268 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 345 (560)
Q Consensus 268 ~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~ 345 (560)
+||++||+||+|||+.||+++.++++++++ + +|+|+||+|+| +.++++.|..||+|++|+||||+++|+.|++.
T Consensus 689 ~ALaaGNtVVlKPse~tplsa~~l~ell~e----AGlP~gvvnvV~G~g~~vg~~L~~hp~v~~V~FTGSt~vg~~I~~~ 764 (1026)
T 4f9i_A 689 AAIVTGNCVVFKPSGITSIIGWHLVELFRE----AGLPEGVFNFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIER 764 (1026)
T ss_dssp HHHHTTCEEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHHCTTEEEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEEcCccchHHHHHHHHHHHH----hCcCCCeEEEEecCcHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHH
Confidence 999999999999999999999999999987 6 99999999996 66788888889999999999999999999987
Q ss_pred cC---------CCEEEecCccceEEEcCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcC
Q 008588 346 TK---------IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 415 (560)
Q Consensus 346 a~---------~~~~lElGGk~p~iV~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~ 415 (560)
++ ||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||++|| |+|+++|+++++++.
T Consensus 765 aa~~~~~~~~lkpv~lElGGknp~IV~~dADld~Aa~~iv~saf~~aGQ~C~A~~rl~V~~~i~-d~f~~~L~~~~~~l~ 843 (1026)
T 4f9i_A 765 AAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVY-DKFIERLVSMAKATK 843 (1026)
T ss_dssp HTSCCTTCCSCCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCC
T ss_pred hhcccccccCccceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCCCCCCceEEecHHHH-HHHHHHHHHHHHhcc
Confidence 64 7999999999999999999999999999999999987 999999999999999 699999999998763
Q ss_pred C---------------------------------e-EecCccc-c-ccc--c-C-----CCCCcccccccCceEEEEEeC
Q 008588 416 V---------------------------------G-LFGGPRA-S-KLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 451 (560)
Q Consensus 416 ~---------------------------------~-~~g~~~~-~-~~~--p-v-----~~~~~~~eE~FGPVl~v~~~~ 451 (560)
+ + ++|+... . ++| | | +++.+++||+||||++|++|+
T Consensus 844 vG~p~d~~t~~Gpvi~~~~~~~v~~~i~~a~~~G~~v~gG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~ 923 (1026)
T 4f9i_A 844 VGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGHVLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAK 923 (1026)
T ss_dssp BCCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHHSEEEEECCCCSSSSCCCCCEEEESCCTTSGGGTSCCCSSEEEEEEES
T ss_pred cCCcccccCccccccCHHHHHHHHHHHHHHHhCCeEEecCCcCCCCCceecceeeecCCCCccccCceecCcEEEEEEeC
Confidence 2 1 1244321 1 444 5 2 368899999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcCeeeEEEcCCcCc--CCCCccCCccceeccccCcccccccchhcc
Q 008588 452 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGL 529 (560)
Q Consensus 452 ~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~V~VN~~~~~--~~~~pfG~g~~sG~~~~~~~~~G~~gl~~f 529 (560)
|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+.+.. ....||||.+.||+|. +.+|++++++|
T Consensus 924 d~deAI~~aN~t~yGLt~~V~t~d~~~a~~~~~~l~aG~v~IN~~~~~~~~~~~PFGG~k~SG~G~---~~gG~~~l~~f 1000 (1026)
T 4f9i_A 924 DFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGT---KAGGPDYLLHF 1000 (1026)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECCCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCCGGGBSSC---CBTSTTTGGGG
T ss_pred CHHHHHHHHHcCCCCCeEEEECCCHHHHHHHHHhCCEeeEEEcCCCCCCCCCCCCCCCcCcCCCCC---CcCCHHHHHHh
Confidence 999999999999999999999999999999999999999999997654 3568999999998762 34689999999
Q ss_pred eEEEEEEEcCc
Q 008588 530 LTTRWILRGNG 540 (560)
Q Consensus 530 t~~K~v~~~~~ 540 (560)
++.|+|+++..
T Consensus 1001 ~~~k~v~~~~~ 1011 (1026)
T 4f9i_A 1001 MDPRVVTENTM 1011 (1026)
T ss_dssp EEEEEEEEECC
T ss_pred ceEEEEEEecc
Confidence 99999998764
No 49
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=100.00 E-value=1.1e-73 Score=628.27 Aligned_cols=396 Identities=15% Similarity=0.133 Sum_probs=323.1
Q ss_pred hhhhhcCCceeeEEecCCCcccchhhHHHHHHHHHHH-HHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 008588 112 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARES-SRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 190 (560)
Q Consensus 112 i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A~~A-~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~ 190 (560)
+.++.+|+.++++... .+|+++|+++|++| |+.|+++|.++|.++|++++++|++|.++|++++++|++++.
T Consensus 26 v~nP~tg~~i~~~~~~-------~~dv~~Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 98 (534)
T 2y53_A 26 LTDPVTGVALVRVSSE-------GLDLARAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTR 98 (534)
T ss_dssp EECTTTCCEEEEECCT-------TCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred EECCCCCCEEEEEeCC-------HHHHHHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 3467788888876543 36999999999999 599999999999999999999999999999999887765442
Q ss_pred hhchhHHHHHHhhCChhHHHHHHHHHHHHhccccc--------ccccccccccCCCeeEEEeecce-EEEEEEcCC-Chh
Q 008588 191 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP--------IGQILKRTELADGLILEKTSCPL-GVLLIVFES-RPD 260 (560)
Q Consensus 191 ~~g~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Pl-GVV~~I~p~-~P~ 260 (560)
.++. .|+...++.+++++...+. .++..+.. .......+.+|+|+ |||++|+|| ||.
T Consensus 99 ----~ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~P~~GVv~~I~PwN~P~ 165 (534)
T 2y53_A 99 ----NDSA--------VDIDGGIFTLSYYAKLGASLGEVHALRDGSAESLS-KDRSFSAQHVLSPTRGVALFINAFNFPS 165 (534)
T ss_dssp ----HHHH--------HHHHHHHHHHHHHHHHHHTTCSCSEEEEEEEEECS-TTSSEEEEEEEEECSSCEEEECCTTCTT
T ss_pred ----HHHH--------HHHHHHHHHHHHHHHHHHhccccccccCCccccCC-CCCcccceEEEecCCCEEEEECCCchHH
Confidence 2222 2455566666666543211 12211110 11222457889997 999999998 796
Q ss_pred -hHHHHHHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHH
Q 008588 261 -ALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 337 (560)
Q Consensus 261 -~~~~~~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~ 337 (560)
+++++++|||++||+||+||||.||+|+.++++++.++ . ||+|+||+|+| +.+.++.| +++|+|+||||++
T Consensus 166 ~~~~~~~a~ALaaGN~VVlKPs~~tp~~~~~l~~l~~~a---G~lP~gvv~vv~g~~~~l~~~l---~~vd~V~FTGS~~ 239 (534)
T 2y53_A 166 WGLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDA---GILPPGALSIICGSSAGLLDQI---RSFDVVSFTGSAD 239 (534)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHHHHH---TCSCTTSEEECCSCCTTSGGGC---CTTCEEEEESCHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh---CCCCCCeEEEEeCChHHHHhcc---cccCEEEEECCHH
Confidence 66899999999999999999999999999999999873 3 69999999996 44334433 4799999999999
Q ss_pred HHHHHHHhc-----CCCEEEecCccceEEEcCCC-----CHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHH
Q 008588 338 LVSQIKEST-----KIPVLGHADGICHVYVDKSA-----NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNE 406 (560)
Q Consensus 338 ~G~~i~~~a-----~~~~~lElGGk~p~iV~~dA-----Dld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~ 406 (560)
+||.|++.+ .||++||||||||+||++|| |||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++
T Consensus 240 ~G~~i~~~aa~a~~~k~v~lELGGk~p~iV~~dA~~~~~Dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~ 318 (534)
T 2y53_A 240 TAATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAAL-EPVLEA 318 (534)
T ss_dssp HHHHHHTSHHHHTTCCEEEEECCCCEEEEECTTCCTTSHHHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHH
T ss_pred HHHHHHHhhhhhcCCCcEEEEcCCCCeEEECCCccccccCHHHHHHHHHHHHHhCCCCcccCCCEEEEeccHH-HHHHHH
Confidence 999999764 49999999999999999999 999999999999999987 999999999999999 699999
Q ss_pred HHHHHHhcCC---------------------------------eE-ecCcc--------ccccc--c-C----C-C--CC
Q 008588 407 LVVELQHEGV---------------------------------GL-FGGPR--------ASKLL--Q-I----P-E--TR 434 (560)
Q Consensus 407 l~~~~~~~~~---------------------------------~~-~g~~~--------~~~~~--p-v----~-~--~~ 434 (560)
|+++++++.+ ++ +||.. ..++| | | + + |.
T Consensus 319 l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~ga~~~~GG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~~~ 398 (534)
T 2y53_A 319 LKAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATL 398 (534)
T ss_dssp HHHHHTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHHHTSSEEEEECTTSCCBSCCTTTSCCCCCEEEECSCGGGCSS
T ss_pred HHHHHHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHHHcCCEEEECCcccccccccCCCCceecCEEEEecCccccCH
Confidence 9999886532 33 35532 12443 5 3 2 3 58
Q ss_pred cccccccCceEEEEEeC---CH-----HHHHHHHHhcCCCceeEEEecCHHHHHHHHhhc--CeeeEEEcCCcC------
Q 008588 435 LFHHEYNSMVCTVEIVD---DV-----RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQV--DSAAVFHNASTR------ 498 (560)
Q Consensus 435 ~~~eE~FGPVl~v~~~~---~~-----deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l--~~G~V~VN~~~~------ 498 (560)
+++||+||||++|++|+ |+ ||||+++|+++|||++||||+|.++++++++++ ++|+|+||+++.
T Consensus 399 i~~eEiFGPVl~v~~~~~~~~~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~~aG~V~vN~~~~~~~~~~ 478 (534)
T 2y53_A 399 LHDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTG 478 (534)
T ss_dssp TTTCCCSSSEEEEEEECCCCC---CTTHHHHHHHHTTSSEEEEEEECSCHHHHHHHHHHHTTTEEEEEEECGGGTTTCCC
T ss_pred HHhCCCcCCEEEEEEECCCCCcccCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHHHHhhCCEEEEcCCcccccccc
Confidence 99999999999999999 99 999999999999999999999999999999999 899999998642
Q ss_pred ---cCCCCccCCccceeccccCccc-ccccchhcceEEEEEEEc
Q 008588 499 ---FCDGARFGLGAEVGISTSRIHA-RGPVGVEGLLTTRWILRG 538 (560)
Q Consensus 499 ---~~~~~pfG~g~~sG~~~~~~~~-~G~~gl~~ft~~K~v~~~ 538 (560)
..+.+||||.++||+|+ + +|++|+++|++.|+|...
T Consensus 479 ~~~~~~~~pfGG~k~SG~Gr----~~~g~~~l~~~~~~k~v~~~ 518 (534)
T 2y53_A 479 HGNVMPMSLHGGPGRAGGGE----ELGGLRALAFYHRRSAIQAA 518 (534)
T ss_dssp SSCCCTTSEECCSGGGCSCC----EESGGGGGGGGEEEEEEEEE
T ss_pred cCCCCCCCCCCCcccCCCCC----CcchHHHHHHHhhhheeecC
Confidence 23578999999998863 4 589999999999998764
No 50
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=100.00 E-value=1e-73 Score=660.19 Aligned_cols=385 Identities=17% Similarity=0.154 Sum_probs=328.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhCChhHHHHHH
Q 008588 134 KQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLA 213 (560)
Q Consensus 134 ~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~~~~ 213 (560)
+.+|+++|+++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++. .++ ..|+..++
T Consensus 548 ~~~dv~~Av~aA~~A~~~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~----~ea--------~~Ev~~ai 615 (1001)
T 3haz_A 548 TPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTL----DDA--------LSELREAA 615 (1001)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCH----HHH--------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHH--------HHHHHHHH
Confidence 388999999999999999999999999999999999999999999999876654432 122 35788889
Q ss_pred HHHHHHhccccc-ccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHHHHHhCCeEEeeCCcchHHHHHH
Q 008588 214 KSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAI 290 (560)
Q Consensus 214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGNtvVlKPse~tp~t~~~ 290 (560)
+.+++|+...+. .+...... ...+...+++++|+|||++|+|| ||. +.++++++||++||+||+||||.||+|+..
T Consensus 616 ~~lr~~a~~a~~~~g~~~~~~-~~~g~~~~~~~~P~GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVlKPse~tp~ta~~ 694 (1001)
T 3haz_A 616 DFCRYYAAQGRKLFGSETAMP-GPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIARE 694 (1001)
T ss_dssp HHHHHHHHHHHHHHSSCEECC-CCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhcCcccccc-CCCCCceEEEEeCCcEEEEEcCCCChHHHHHHHHHHHHHcCCEEEEecchhhHHHHHH
Confidence 999998865432 22221111 12355678899999999999998 795 678999999999999999999999999999
Q ss_pred HHHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhc------CCCEEEecCccceEEE
Q 008588 291 LHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST------KIPVLGHADGICHVYV 362 (560)
Q Consensus 291 l~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a------~~~~~lElGGk~p~iV 362 (560)
+++++.+ + +|+|+||+|+| +++ ++.|..||+||+|+||||+++|+.|++++ .||+++|||||||+||
T Consensus 695 l~ell~e----AGlP~gvv~vV~G~g~~-g~~L~~~p~Vd~V~FTGSt~vGr~I~~~aA~~~~~l~pv~lElGGknp~IV 769 (1001)
T 3haz_A 695 AVALLHE----AGIPKSALYLVTGDGRI-GAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIA 769 (1001)
T ss_dssp HHHHHHH----HTCCTTTEEECCCCHHH-HHHHHHCTTCCEEEEESCHHHHHHHHHHHHHSSSCCCCEEEECCCCEEEEE
T ss_pred HHHHHHH----hCcCcCcEEEEecCchH-HHHHHhCCCcCEEEecCCHHHHHHHHHHHhcccCCCceEEeecCCcceEEE
Confidence 9999987 6 99999999996 555 88888899999999999999999998764 3899999999999999
Q ss_pred cCCCCHHHHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHHhcCCe------------------------
Q 008588 363 DKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGVG------------------------ 417 (560)
Q Consensus 363 ~~dADld~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~~------------------------ 417 (560)
++|||+|.|++.+++|+|.|+| +|+|++|+|||++|| |+|+++|+++++++.+.
T Consensus 770 ~~dADld~Aa~~iv~s~f~naGQ~C~A~~rllV~e~i~-d~f~~~L~~~~~~l~vGdp~d~~t~~Gpli~~~~~~rv~~~ 848 (1001)
T 3haz_A 770 DATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVA-DRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAH 848 (1001)
T ss_dssp CTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCCCCceeeccHHHH-HHHHHHHHHHHHhcCCCCcccccCccCCCCCHHHHHHHHHH
Confidence 9999999999999999999987 999999999999999 69999999999876421
Q ss_pred ---------EecCccc-cccc--c-C---CCCCcccccccCceEEEEEeCC--HHHHHHHHHhcCCCceeEEEecCHHHH
Q 008588 418 ---------LFGGPRA-SKLL--Q-I---PETRLFHHEYNSMVCTVEIVDD--VRAAIDHIHQHGSAHTDCIVAEDQKVA 479 (560)
Q Consensus 418 ---------~~g~~~~-~~~~--p-v---~~~~~~~eE~FGPVl~v~~~~~--~deAi~~aN~~~~GL~a~I~t~d~~~a 479 (560)
++|+... .++| | | +++.+++||+||||++|++|++ +||||+++|+++|||++||||+|.+++
T Consensus 849 i~~a~~~g~v~gg~~~~~G~fv~PTvl~~~~~~~~~eEiFGPVL~V~~~~~~~ldeAI~~aN~t~yGLta~V~T~d~~~a 928 (1001)
T 3haz_A 849 IARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSI 928 (1001)
T ss_dssp HHHHHHHSEEEEECCCCSSSCCCCEEEECSSGGGCCSCCCSSEEEEEEECGGGHHHHHHHHHHTCCCSEEEEECSCHHHH
T ss_pred HHHHHhcCeEeccccCCCCcEEeeEEecCCCHHHHhccccCcEEEEEEeCCCCHHHHHHHHHcCCCCceEEEEcCCHHHH
Confidence 1111111 1333 5 3 4678999999999999999996 899999999999999999999999999
Q ss_pred HHHHhhcCeeeEEEcCCcCcC--CCCccCCccceeccccCcccccccchhcceEEEEEEEcCc
Q 008588 480 ETFLCQVDSAAVFHNASTRFC--DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 540 (560)
Q Consensus 480 ~~~~~~l~~G~V~VN~~~~~~--~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~~~ 540 (560)
+++++++++|+|+||+++... ...||||.+.||+|. +.+|++|+++|++.|+|+++..
T Consensus 929 ~~~a~~l~aG~V~VN~~~~~~~~~~~PFGG~k~SG~G~---~~gG~~gl~~ft~~K~v~~~~~ 988 (1001)
T 3haz_A 929 EAIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGP---KAGGPHYLARFATEQTVTINTA 988 (1001)
T ss_dssp HHHHHHCCCSEEEESSCSCCCCTTTSCBCCCGGGBCCC---CBTSTTSGGGGEEEEEEEEECG
T ss_pred HHHHHhCCeeeEEEeCCCcCCCCCCCCCCCcccCcCCC---CCCCHHHHHHhceeeEEEECCc
Confidence 999999999999999976543 457999999998763 3468999999999999998764
No 51
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-71 Score=602.83 Aligned_cols=383 Identities=18% Similarity=0.225 Sum_probs=309.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhCChhHHHHHHH
Q 008588 135 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 214 (560)
Q Consensus 135 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~~~~~ 214 (560)
.+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++.+|++++. .++.. .+....+.
T Consensus 11 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~e~~~-------~~~~~~~~ 79 (464)
T 3k9d_A 11 IQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGI----WQDKV-------IKNVFASK 79 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCH----HHHHH-------HHHHHHHH
Confidence 78999999999999999999999999999999999999999999999887765432 22221 12334455
Q ss_pred HHHHHhcccccccccccccccCCCeeEEEeecceEEEEEEcCC-Chhh-HHHHHHHHHHhCCeEEeeCCcchHHHHHHHH
Q 008588 215 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPDA-LVQIASLAIRSGNGLLLKGGKEAMRSNAILH 292 (560)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~~-~~~~~~~ALaaGNtvVlKPse~tp~t~~~l~ 292 (560)
.+.++++..+..|.... ..+...+++++|+|||++|+|| ||.. .++++++||++||+||+||||.||+|+..++
T Consensus 80 ~~~~~~~~~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKps~~ap~t~~~l~ 155 (464)
T 3k9d_A 80 HVYNYIKDMKTIGMLKE----DNEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETV 155 (464)
T ss_dssp HHHHHHTTCCCSEEEEE----ETTTTEEEEEEECCEEEEEECSSSHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH
T ss_pred HHHHhhhcccccceecc----CCCceeEEEEecceEEEEECCCcChHHHHHHHHHHHHHhCCeEEEECCcchHHHHHHHH
Confidence 55555443333332211 2344578889999999999998 7974 5799999999999999999999999999999
Q ss_pred HHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecC-ccceEEEcCCCCHH
Q 008588 293 KVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHAD-GICHVYVDKSANLD 369 (560)
Q Consensus 293 ~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~~~~~lElG-Gk~p~iV~~dADld 369 (560)
+++.+++.++ +|+|+||+|++ +.++++.|..||+||+|+||||+++.+..+ ...||+ +|+| ||+|+||++|||||
T Consensus 156 ~ll~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~vd~I~fTGs~~v~~~a~-~~~kpv-lelG~G~~p~iV~~dADl~ 233 (464)
T 3k9d_A 156 RIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAY-SSGTPA-IGVGPGNGPAFIERSANIP 233 (464)
T ss_dssp HHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTEEEEEECSCHHHHHHHT-TSSSCE-EEBCCCCCEEEECTTSCHH
T ss_pred HHHHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCChHHHHHHH-hcCCcE-EeeCCCCCeEEECCCCCHH
Confidence 9998888889 99999999996 566777777899999999999999877653 346999 6777 99999999999999
Q ss_pred HHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHHHH-------hc--C-------CeEecC----cc---cc
Q 008588 370 VAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQ-------HE--G-------VGLFGG----PR---AS 425 (560)
Q Consensus 370 ~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~-------~~--~-------~~~~g~----~~---~~ 425 (560)
.|++.+++|+|+|+| +|+|++|+|||++|| |+|+++|+++.. +. | ..+ |. .. ..
T Consensus 234 ~Aa~~i~~~~~~n~Gq~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~-gp~i~~~~~~~i~ 311 (464)
T 3k9d_A 234 RAVKHILDSKTFDNGTICASEQSVVVERVNK-EAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSM-NPAIVGKSVQHIA 311 (464)
T ss_dssp HHHHHHHHHHTGGGGCSTTSCCEEEEEHHHH-HHHHHHHHHTTEEECCHHHHHHHHHHHBCTTSCB-CGGGTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeHHHH-HHHHHHHHHhhhhhcChhhhhhhcccccCCCCcc-CcccCHHHHHHHH
Confidence 999999999999987 999999999999999 699999987641 11 0 000 00 00 00
Q ss_pred ccc----c------------CCCCCcccccccCceEEEEEeCCHHHHH----HHHHhcCCCceeEEEecCHHHHHHHHhh
Q 008588 426 KLL----Q------------IPETRLFHHEYNSMVCTVEIVDDVRAAI----DHIHQHGSAHTDCIVAEDQKVAETFLCQ 485 (560)
Q Consensus 426 ~~~----p------------v~~~~~~~eE~FGPVl~v~~~~~~deAi----~~aN~~~~GL~a~I~t~d~~~a~~~~~~ 485 (560)
.++ + ++.+..+.||+||||++|++|+|+|||| +++|+++|||++||||+|.+++++|+++
T Consensus 312 ~~~~~a~~~ga~vl~gg~~~v~~~~~~~~E~fgPVl~v~~~~~~~eAi~~ai~~~n~~~~gl~a~i~t~d~~~a~~~~~~ 391 (464)
T 3k9d_A 312 NLAGLTVPADARVLIAEETKVGAKIPYSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALK 391 (464)
T ss_dssp HHTTCCCCTTCCEEEEECCCCSTTCGGGSCCCSSEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH
T ss_pred HHhhhhhcCCCEEEEcCCCCCCCCCcccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHh
Confidence 000 1 2222335699999999999999999997 7999999999999999999999999999
Q ss_pred cCeeeEEEcCCcC---------cCCCCccCCccceeccccCcccccccchhcceEEEEEEEcCce
Q 008588 486 VDSAAVFHNASTR---------FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGH 541 (560)
Q Consensus 486 l~~G~V~VN~~~~---------~~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~~~~ 541 (560)
+++|+|+||+++. ..+.+|||+|.+ |.+ ..+|..|+++|++.|+|.++..+
T Consensus 392 l~~G~v~vN~~~~~~~~g~~~~~~~~~~~G~G~~-G~g----~~~~~~~~~~~~~~k~v~~~~~~ 451 (464)
T 3k9d_A 392 KPVSRLLVNTPGALGGIGATTNLVPALTLGCGAV-GGS----SSSDNIGPENLFNIRRIATGVLE 451 (464)
T ss_dssp SSEEEEEESSCHHHHHTTSSSSSCCCSCBBCTGG-GTC----SCCSBCCGGGSEEEEEEEECCCC
T ss_pred CCEeEEEEECCccccccccCCCCCccccccCcCC-CCC----cCCCCCCHHHheEEEEEEecCCc
Confidence 9999999999875 357789998654 433 24588999999999999987654
No 52
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=100.00 E-value=3.5e-69 Score=581.60 Aligned_cols=381 Identities=17% Similarity=0.221 Sum_probs=295.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhCChhHHHHHHH
Q 008588 135 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 214 (560)
Q Consensus 135 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~~~~~ 214 (560)
.+|+++++++|++||+.|+++|.++|.++|++++++|++|.++|++++.+|++++. .++.. .++...++
T Consensus 6 ~~~v~~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~----~e~~~-------~~~~~a~~ 74 (452)
T 3my7_A 6 MAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGI----VEDKV-------IKNHFASE 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHH-------HHHHHHHH
Confidence 78999999999999999999999999999999999999999999998877665432 22221 23445555
Q ss_pred HH-HHHhcccccccccccccccCCCeeEEEeecceEEEEEEcCC-Chh-hHHHHHHHHHHhCCeEEeeCCcchHHHHHHH
Q 008588 215 SI-RILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAIL 291 (560)
Q Consensus 215 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGNtvVlKPse~tp~t~~~l 291 (560)
.+ +++.. .+..|.... +.+...+++++|+|||++|+|| ||. +.++++++||++||+||+|||+.||+|+..+
T Consensus 75 ~~~~~~~~-~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~~~~ 149 (452)
T 3my7_A 75 FIYNKYKD-EQTCGILEE----DDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDA 149 (452)
T ss_dssp HHHHHHTT-CCCSEEC-----------CEEEEEECCEEEEEECTTSTTHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred HHHHHhhh-ccccccccC----CCCCceEEEecCceEEEEEcCCCChHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHH
Confidence 55 34432 222332211 1233457889999999999998 796 4579999999999999999999999999999
Q ss_pred HHHHHHhcccc-cCcCcEEeecC-CchhhHhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEEecCccceEEEcCCCCHH
Q 008588 292 HKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLD 369 (560)
Q Consensus 292 ~~l~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~a~~~~~lElGGk~p~iV~~dADld 369 (560)
++++++++.++ +|+|+||+|++ +.++++.|..||+||+|+||||+++++..+ ...||+++|||||+|+||++|||+|
T Consensus 150 ~~~~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~p~v~~V~fTGs~~~~~~a~-~~~kp~~~e~gG~~p~iV~~dADl~ 228 (452)
T 3my7_A 150 AKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGGPGMVKAAY-SSGKPAIGVGAGNVPVVIDETADIK 228 (452)
T ss_dssp HHHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTCCEEEECSCHHHHHHHH-TSSSCEEECC--CEEEEECTTSCHH
T ss_pred HHHHHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhCCCccEEEEECcHHHHHHHH-hcCCCEEecCCCCCeEEEeCCCCHH
Confidence 99999988889 99999999996 667788888899999999999999988653 4579999999999999999999999
Q ss_pred HHHHHHHhhcCCCCC-cccccceEEEeCccCCcchHHHHHHH------------HHhc-------CCeEecCccc-----
Q 008588 370 VAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVE------------LQHE-------GVGLFGGPRA----- 424 (560)
Q Consensus 370 ~Aa~~iv~~~f~n~g-~C~a~~rv~V~~~i~dd~f~~~l~~~------------~~~~-------~~~~~g~~~~----- 424 (560)
.|++.+++|+|+|+| +|+|.+|+|||+++| |+|+++|+++ ++++ +.+++|+...
T Consensus 229 ~Aa~~iv~s~~~~~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~gpli~~~~~~~v~~~i~~~~~~~a~v~G~~~~~~~~~ 307 (452)
T 3my7_A 229 RAVASVLMSKTFDNGVVCASEQAVIVVDEVY-DEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKIVGQPATAIAEM 307 (452)
T ss_dssp HHHHHHHHGGGGGGGCCTTCEEEEEEEGGGH-HHHHHHHHTTTEEECCHHHHHHHHHHHEETTEECGGGTTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccCCCcEEEEcHHHH-HHHHHHHHHhCCCcCCHHHHHHHHHHHHhhcccCCeEecCccchhHHh
Confidence 999999999999987 999999999999999 6999998763 1111 2233344321
Q ss_pred cccc--c-C------------CCCCcccccccCceEEEEEeCCHHHHHHHHHhcC----CCceeEEEecCHHHHHH---H
Q 008588 425 SKLL--Q-I------------PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG----SAHTDCIVAEDQKVAET---F 482 (560)
Q Consensus 425 ~~~~--p-v------------~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~----~GL~a~I~t~d~~~a~~---~ 482 (560)
.+++ | + ++++++ +|+||||++|++|+|+||||+++|++. |||+++|||+|.+++++ |
T Consensus 308 ~G~~v~pt~~vl~~~~~~~v~~~~~~~-~E~FgPVl~v~~~~~~~eAi~~an~~~~~~g~Glta~i~t~d~~~a~~i~~~ 386 (452)
T 3my7_A 308 AGVKVPADTKVLIGEGLGKVSYDDAFA-HEKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYF 386 (452)
T ss_dssp HTCCCCTTCCEEEEECSSSCCTTCGGG-SCCSSSEEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEESCTTTCHHHHHHH
T ss_pred CCceeCCCeeEEeeccccCCCCcchhh-cCccCcEEEEEEeCCHHHHHHHHHhcccccCCCCEEEEEcCCHHHHHHHHHH
Confidence 1222 3 2 134545 589999999999999999999999985 99999999999887777 9
Q ss_pred HhhcCeeeEEEcCCcCcC-----------CCCccCCccceeccccCcccccccchhcceEEEEEEEcC
Q 008588 483 LCQVDSAAVFHNASTRFC-----------DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 539 (560)
Q Consensus 483 ~~~l~~G~V~VN~~~~~~-----------~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~~~~ 539 (560)
++++++|+|+||+++.+. +.+.+|.|.+.|.+. .+..+.++|.+.|+|..+.
T Consensus 387 a~~l~~G~V~VN~~~~~Gg~G~~~~f~~~~~~t~g~g~~Gg~~~-----~~nv~~~~l~n~~~v~~~~ 449 (452)
T 3my7_A 387 GDKMKTARILINIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNSI-----SENVGPKHLINKKTVAKRA 449 (452)
T ss_dssp HHHCCCSEEEESCCCC---------------------------------CCCCCGGGGEEEEEEECCC
T ss_pred HHhCCEEEEEECCCCCCcccccccccCcCceEeeeccccCCCcc-----CCCCChhHeeeeeEEEeec
Confidence 999999999999986541 223456666655543 3678999999999998653
No 53
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.87 E-value=7.6e-23 Score=205.31 Aligned_cols=125 Identities=23% Similarity=0.330 Sum_probs=98.6
Q ss_pred CCcccCCccccCC--CCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCC
Q 008588 1 MPVSFDNRNNFQD--SSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKS 77 (560)
Q Consensus 1 ~Pv~~gd~~~~~~--~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~ 77 (560)
|||++||++.+.+ .+..++|+|++|+++|.+|+||.|+++|||||||++|| .+|++++|+++++.++.+.+ .++++
T Consensus 138 ipVi~~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l-~~~~~ 216 (269)
T 3ll9_A 138 VPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESL-DGTLN 216 (269)
T ss_dssp EEEEECEEEEBSCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------
T ss_pred EEEECCCEEecccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHh-cccCC
Confidence 6999999998864 34567999999999999999999999999999999999 58999999999998886433 33345
Q ss_pred ccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCce-eeEEe
Q 008588 78 RVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRV-GTLFH 126 (560)
Q Consensus 78 ~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~-GT~~~ 126 (560)
.+++|||.+|+++|..+.++|++++|+||+.|+.+.++++|+.. ||++.
T Consensus 217 ~~~tgGM~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 217 TDVTGGMVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp -------SHHHHHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred CcCcCCcHHHHHHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 68999999999999999999999999999999999999999988 99876
No 54
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.86 E-value=2e-22 Score=210.31 Aligned_cols=125 Identities=38% Similarity=0.519 Sum_probs=77.4
Q ss_pred CCcccC-CccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeeh--hchHHHHhcCCC
Q 008588 1 MPVSFD-NRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIR--AKHQAEITFGDK 76 (560)
Q Consensus 1 ~Pv~~g-d~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~--~~~~~~~~~~~~ 76 (560)
|||+++ |.+.. .+..|+|||++|+++|.+++||.|+|+|||||||++|| ++|++++|++|+. .++.+ +..+++
T Consensus 130 IPIv~end~v~~--~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~-l~~~~~ 206 (367)
T 2j5v_A 130 VPVINENDAVAT--AEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRA-IAGDSV 206 (367)
T ss_dssp EEEEEECTTSCC--GGGCCCSHHHHHHHHHHHHTCSEEEEEECC------------------------------------
T ss_pred EEEECCCCceec--ccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHH-HhhccC
Confidence 588874 44443 24568999999999999999999999999999999999 5999999999998 67764 444445
Q ss_pred CccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 77 SRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 77 ~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
+.+++|||.+|++||+.+.++|++++|+||++|+.+.++++|+..||++.+.
T Consensus 207 s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~ 258 (367)
T 2j5v_A 207 SGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQ 258 (367)
T ss_dssp -------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCC
T ss_pred CCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcC
Confidence 6789999999999999999999999999999999999999998899999886
No 55
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.85 E-value=3.7e-22 Score=198.58 Aligned_cols=122 Identities=29% Similarity=0.432 Sum_probs=101.7
Q ss_pred CCcccCC-ccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehh--chHHHHhcCCC
Q 008588 1 MPVSFDN-RNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRA--KHQAEITFGDK 76 (560)
Q Consensus 1 ~Pv~~gd-~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~--~~~~~~~~~~~ 76 (560)
|||++|+ .+... +..++|+|++|+++|.+++||.|+++|||||||++|| ++|++++|+++++. |+.+ +..+++
T Consensus 123 ipVi~~~d~v~~~--~~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~-~~~~~~ 199 (251)
T 2ako_A 123 LPIINENDATAIE--EIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQ-ATIKTG 199 (251)
T ss_dssp EEEEEECTTTCCH--HHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC--------
T ss_pred EEEEeCCCceeec--ceeecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHH-HhcccC
Confidence 5888854 33221 2368999999999999999999999999999999999 58999999999998 7764 333334
Q ss_pred CccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhh--hhcCCceeeEE
Q 008588 77 SRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIK--VLEGKRVGTLF 125 (560)
Q Consensus 77 ~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~--~~~G~~~GT~~ 125 (560)
+.+++|||.+|++||..+.++|++++|+||++|+.+.+ +++|+..||++
T Consensus 200 ~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i 250 (251)
T 2ako_A 200 SEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 250 (251)
T ss_dssp --CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCCSSEEE
T ss_pred CCCccCchHHHHHHHHHHHHCCCeEEEEeCCChhhhhhhHHhcCCCCceEe
Confidence 56899999999999999999999999999999999999 99998899987
No 56
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.84 E-value=1.9e-21 Score=192.98 Aligned_cols=119 Identities=24% Similarity=0.344 Sum_probs=95.3
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||++||++.+.+.+..++|+|++|+++|.+++||.|+++|||||||++|| .+|++++|++++ +.+. ....+.+
T Consensus 127 ipVi~~~~~~~~~~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~----~~~~~~~ 201 (249)
T 3ll5_A 127 VPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNIT----FDRVQND 201 (249)
T ss_dssp EEEEECEEEEEETTEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC------------
T ss_pred EEEECCCEEEcCCCceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHh----cccCCCe
Confidence 699999888775433458999999999999999999999999999999999 599999999994 2332 2223568
Q ss_pred ccCChHHHHHHHHHH-HHCCCcEEEEeCCCCchhhhhhcCCce-eeEE
Q 008588 80 GRGGMTAKVNAAYCA-ACAGIPVVITSGFAMDSIIKVLEGKRV-GTLF 125 (560)
Q Consensus 80 ~tggM~~K~~aa~~~-~~~gi~v~I~~g~~~~~i~~~~~G~~~-GT~~ 125 (560)
++|||.+|+++|..+ .++|++++|+||++|+++.+ +.|+.. ||++
T Consensus 202 ~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i 248 (249)
T 3ll5_A 202 VTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGD-IGKESFIGTVI 248 (249)
T ss_dssp -----HHHHHHHHHHHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEE
T ss_pred eECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEe
Confidence 999999999999999 89999999999999999999 888888 9987
No 57
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.84 E-value=1.8e-21 Score=197.01 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=102.9
Q ss_pred CCcccCCccccCCCCC-ceechhHHHHHHHHH-cCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHH--hcCCC
Q 008588 1 MPVSFDNRNNFQDSSG-IFWDNDSLAGLLALE-LKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEI--TFGDK 76 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~-~~~~~D~~aa~~A~~-l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~--~~~~~ 76 (560)
|||++||++.+.+ +. .++|+|++|+++|.+ |+||.|+|+|||||||++||+ ++++|++|++.++++.+ ..+++
T Consensus 149 IpVi~gd~~~~~~-g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~--~a~~i~~is~~e~~~l~~~~~~~~ 225 (286)
T 3d40_A 149 LPVLAGDALFDEH-GKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG--GDTILPEVDARSPEQAYAALWGSS 225 (286)
T ss_dssp EEEEECEEEEBTT-SCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC-----CEECCEEETTSCHHHHHHHHHSC
T ss_pred EEEEcCCeEEcCC-CCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC--CCcCCcccCHHHHHHHHHhhcccc
Confidence 6999999888864 43 579999999999999 999999999999999999998 79999999998865422 22334
Q ss_pred CccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcC-----Cce-eeEEecC
Q 008588 77 SRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEG-----KRV-GTLFHRD 128 (560)
Q Consensus 77 ~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G-----~~~-GT~~~~~ 128 (560)
+.+++|||.+|++||..++++|++++|+||++|+++.+++++ +.. ||.+..+
T Consensus 226 ~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 226 EWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp C----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred CCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence 668999999999999999999999999999999999999998 665 9998764
No 58
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.83 E-value=6.1e-21 Score=186.84 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=97.5
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||++| +..++|+|++|+++|.+|+||.|+++|||||||++|| ++|++++|+++++.|+.+.+.. ...
T Consensus 107 ipVi~g--------g~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~---~~~ 175 (226)
T 2j4j_A 107 VVVTGG--------FQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEG---SQS 175 (226)
T ss_dssp BEEECC--------CSTTSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC-------
T ss_pred EEEEcC--------CCCCCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhc---CCC
Confidence 588888 2348999999999999999999999999999999999 5999999999999988753321 247
Q ss_pred ccCCh--HHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEec
Q 008588 80 GRGGM--TAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 127 (560)
Q Consensus 80 ~tggM--~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~ 127 (560)
.+||| .+|++++..+.++|++++|+||++|+.+.++++|+..||++.+
T Consensus 176 ~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 176 VQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp ------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred CcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 88999 9999999999999999999999999999999999889999864
No 59
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.82 E-value=4.3e-20 Score=188.18 Aligned_cols=119 Identities=27% Similarity=0.374 Sum_probs=104.5
Q ss_pred CCcccCCccccCCCCCce-echhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~-~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||+++. ..+. .|..| +|+|++|+++|.+|+||.|+|+|||||||++||+ | +++|++|+++|+.+.+. ...
T Consensus 177 IpVi~~v-~~~~-~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~-~-a~~i~~is~~e~~~~~~----~g~ 248 (298)
T 2rd5_A 177 IPVIASV-AADD-SGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED-P-SSLIKEIDIKGVKKMIE----DGK 248 (298)
T ss_dssp EEEEESE-EECT-TSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC-T-TSEECEEEHHHHHHHHH----TTS
T ss_pred EEEEcCe-eECC-CCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC-C-CCCcccCCHHHHHHHHH----CCC
Confidence 6899975 5554 36666 5999999999999999999999999999999997 5 89999999998876443 247
Q ss_pred ccCChHHHHHHHHHHHHCCCc-EEEEeCCCCchh-hhhhcCCceeeEEec
Q 008588 80 GRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHR 127 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~-v~I~~g~~~~~i-~~~~~G~~~GT~~~~ 127 (560)
++|||.+|++||..+.++|++ ++|+||+.|+.+ .++++++..||++.+
T Consensus 249 ~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 249 VAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp SCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred CCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 899999999999999999998 999999999998 889998889999863
No 60
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.81 E-value=9.1e-20 Score=187.32 Aligned_cols=120 Identities=23% Similarity=0.381 Sum_probs=105.4
Q ss_pred CCcccCCccccCCCCCcee-chhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFW-DNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~-~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||+++ +..+. .|..|+ |+|++|+++|.+|+||.|+|+|||||||++||+ ++++|++|+++|+.+.+. ...
T Consensus 189 IpVi~~-v~~~~-~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~--~a~~i~~is~~e~~~l~~----~g~ 260 (321)
T 2v5h_A 189 IPVISS-VAADE-NGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR--PESLIPRLNIPQSRELIA----QGI 260 (321)
T ss_dssp EEEEES-EEECT-TSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC--TTCBCCEEEHHHHHHHHH----TTS
T ss_pred eEEEeC-ceECC-CCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC--CCeeeeEEcHHHHHHHHh----CCC
Confidence 588884 56665 366776 999999999999999999999999999999997 489999999998876443 247
Q ss_pred ccCChHHHHHHHHHHHHCCCc-EEEEeCCCCchh-hhhhcCCceeeEEecC
Q 008588 80 GRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 128 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~-v~I~~g~~~~~i-~~~~~G~~~GT~~~~~ 128 (560)
++|||.+|++||..+.++|++ ++|+||+.|+.+ .++++++..||++.+.
T Consensus 261 ~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 261 VGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp SCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred CcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 899999999999999999998 999999999988 7888888899999876
No 61
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.81 E-value=8.2e-20 Score=186.20 Aligned_cols=118 Identities=24% Similarity=0.330 Sum_probs=104.8
Q ss_pred CCcccCCccccCCCCCce-echhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~-~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||++|. ..+. .|..| +|+|++|+.+|.+|+||.|+|+|||||||++||+ ++++|++|+++|+.+ +.. +
T Consensus 171 IpVv~~v-~~~~-~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~--~~~~i~~is~~e~~~-l~~-----~ 240 (299)
T 2ap9_A 171 IPVVSTL-APDA-DGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD--RDSLVSEIDTGTLAQ-LLP-----T 240 (299)
T ss_dssp EEEEESE-EECT-TCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC--TTCEESEEEHHHHHH-HGG-----G
T ss_pred eEEECCe-eECC-CCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC--CCcChhhcCHHHHHH-HHH-----h
Confidence 6899975 5565 36666 5999999999999999999999999999999996 479999999998875 322 7
Q ss_pred ccCChHHHHHHHHHHHHCCCc-EEEEeCCCCchh-hhhhcCCceeeEEecC
Q 008588 80 GRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 128 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~-v~I~~g~~~~~i-~~~~~G~~~GT~~~~~ 128 (560)
++|||.+|++||..+.++|++ ++|+||++|+.+ .++++++..||++.+.
T Consensus 241 ~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 241 LELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp SCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred hcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 899999999999999999999 999999999986 8899999999999876
No 62
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.79 E-value=7.5e-20 Score=183.61 Aligned_cols=109 Identities=21% Similarity=0.371 Sum_probs=94.6
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||+.| ..+..|+|||++|+++|.+++||+|+++|||||||++|| ++|++++|+++++.|+.+
T Consensus 171 IpVv~g------~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~---------- 234 (281)
T 3nwy_A 171 VVIFGA------GMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD---------- 234 (281)
T ss_dssp EEEEES------TTSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT----------
T ss_pred eEEEEC------CCCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH----------
Confidence 577877 236678999999999999999999999999999999999 699999999999877642
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEe
Q 008588 80 GRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 126 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~ 126 (560)
.|+|..|+.|+..+.++|++++|+||++|++|.++++|+..||++.
T Consensus 235 -~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 235 -RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp -TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred -cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 2567889999999999999999999999999999999999999975
No 63
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.79 E-value=1.5e-19 Score=180.99 Aligned_cols=119 Identities=25% Similarity=0.258 Sum_probs=102.9
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHH--hcCCCCc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEI--TFGDKSR 78 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~--~~~~~~~ 78 (560)
|||++||++.+.+.+..++|+|++|+++|.+++||.|+++||||||| +|| ++|++++..++++.+ ..++.+.
T Consensus 145 ipVi~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~-----~~i~~~~~~e~~~l~~~~~~~~~~ 218 (266)
T 3k4o_A 145 VPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVL-IDN-----KPIKRIDKNNIYKILNYLSGSNSI 218 (266)
T ss_dssp EEEEECEEEEESSSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSS-----SBCSEECTTTHHHHHHHHHSTTCS
T ss_pred EEEEeCCEEEcCCCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCC-----eecCcCCHHHHHHHHHHhccccCC
Confidence 69999999888653456899999999999999999999999999999 654 688888877665422 2355667
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 79 VGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 79 ~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
+++|||.+|+++|..+.+ +++|+||++|+.+.++++|+..||++.+.
T Consensus 219 ~~tGGM~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 219 DVTGGMKYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp CCSSHHHHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred cccCCHHHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 999999999999998887 99999999999999999999899999875
No 64
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.79 E-value=1.5e-19 Score=181.58 Aligned_cols=114 Identities=29% Similarity=0.346 Sum_probs=95.3
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchH--HHHhcCCCCc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQ--AEITFGDKSR 78 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~--~~~~~~~~~~ 78 (560)
|||+++ +..+.+....++|+|++|+++|.+++||.|+++|||||||+ || +|++++|++++++++. + + +.
T Consensus 152 ipVi~~-v~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp-~~~a~~i~~i~~~e~~~~~-l-----~~ 222 (269)
T 2egx_A 152 LPVLTP-PALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLA-RY-PDEASLVREIPVERIEDPE-Y-----LA 222 (269)
T ss_dssp EEEEEC-CEEETTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC--------CBCCEECHHHHHCHH-H-----HT
T ss_pred EEEEcC-cEECCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC-CCCccccccCCHHHhhHHH-h-----cC
Confidence 588886 55665422357999999999999999999999999999999 89 6899999999998887 5 3 24
Q ss_pred cccCChHHHHHHHHHHHHCCC-cEEEEeCCCCchhhhhhcCCceeeEE
Q 008588 79 VGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEGKRVGTLF 125 (560)
Q Consensus 79 ~~tggM~~K~~aa~~~~~~gi-~v~I~~g~~~~~i~~~~~G~~~GT~~ 125 (560)
+++|||.+|++||..+.++|+ +++|+||++|+.+.+.+.| .||++
T Consensus 223 ~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i 268 (269)
T 2egx_A 223 LAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGTVV 268 (269)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTT--CSEEE
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCC--CCeEE
Confidence 789999999999999999999 8999999999999988877 79986
No 65
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.79 E-value=1.9e-19 Score=179.41 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=92.2
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeec-CCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSD-VEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSR 78 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltd-VdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~ 78 (560)
|||+.| ..+..|+|||++|+++|.+++||.|+++|| |||||++|| ++|++++|++|+++++.+ +
T Consensus 145 IpVi~~------~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~-~------- 210 (256)
T 2va1_A 145 VMIFVA------GTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALT-Q------- 210 (256)
T ss_dssp EEEEES------TTSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHH-H-------
T ss_pred EEEEEC------CCCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHH-h-------
Confidence 588888 236779999999999999999999999999 999999999 589999999999998875 2
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEe
Q 008588 79 VGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 126 (560)
Q Consensus 79 ~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~ 126 (560)
+.||| |++|+..+.++|++++|+||++|+.+.++++|+..||++.
T Consensus 211 -~~~~m--k~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 211 -NLKVM--DATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp -TCCSS--CHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred -ccCCc--cHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 13788 9999999999999999999999999999999988999985
No 66
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.79 E-value=9.8e-20 Score=183.34 Aligned_cols=120 Identities=19% Similarity=0.189 Sum_probs=104.9
Q ss_pred CCcccCCccccCC-C--CC-ceechhHHHHHHHHHcCCCeEEEeecCCccccCCCC---CCCCceeeeeehhchHHHHhc
Q 008588 1 MPVSFDNRNNFQD-S--SG-IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS---EPNSKLIHTYIRAKHQAEITF 73 (560)
Q Consensus 1 ~Pv~~gd~~~~~~-~--~~-~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~---~p~a~~i~~i~~~~~~~~~~~ 73 (560)
|||++|++..+.. . +. .++|||++|+++|.+++||.|+++|||||||++||+ +|++++|+++++.++.+ +.
T Consensus 146 IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~-~~- 223 (276)
T 2ogx_A 146 AVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAK-SE- 223 (276)
T ss_dssp EEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHT-SC-
T ss_pred EEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHH-Hh-
Confidence 6999998777731 1 23 689999999999999999999999999999999994 89999999999987764 21
Q ss_pred CCCCccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 74 GDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 74 ~~~~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
++|||.+|+.++..+.+.+++++|+||++|+.+.++++|+..||++.+.
T Consensus 224 ------g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 224 ------GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp ------SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred ------CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 6899999998887777778999999999999999999998899999765
No 67
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.78 E-value=2.2e-19 Score=177.37 Aligned_cols=110 Identities=24% Similarity=0.334 Sum_probs=97.3
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||++| .++..|+|||++|+++|.+++||.|+++|||||||++|| .+|++++|+++++.|+.+ .
T Consensus 131 IpVv~~------~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---~------ 195 (243)
T 3ek6_A 131 IAIFAA------GTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIM---Q------ 195 (243)
T ss_dssp EEEEES------TTSSTTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHH---H------
T ss_pred EEEEEC------CCCCCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHh---C------
Confidence 578877 236678999999999999999999999999999999999 599999999999987753 1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEec
Q 008588 80 GRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 127 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~ 127 (560)
+.++| |+.|+..|.++|++++|+||++|+++.++++|+..||++.+
T Consensus 196 g~~~~--~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 196 GLEVM--DTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp TCCSS--CHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred CchhH--HHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 13445 78999999999999999999999999999999989999875
No 68
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.78 E-value=2.6e-19 Score=183.33 Aligned_cols=119 Identities=21% Similarity=0.204 Sum_probs=99.2
Q ss_pred CCcccCC---cc--ccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCC
Q 008588 1 MPVSFDN---RN--NFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGD 75 (560)
Q Consensus 1 ~Pv~~gd---~~--~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~ 75 (560)
|||++|+ -+ .|......|+|+|++|+++|.+|+||.|+++|||||||+ ||.+|++++|++|+.+++.+.+..
T Consensus 184 IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~~~~a~~i~~i~~~e~~~~~~~-- 260 (310)
T 2we5_A 184 ITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI-NYGKPDEKQLTNVTVAELEEYKQA-- 260 (310)
T ss_dssp EEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-STTSTTCEECCEEEHHHHHHHHHT--
T ss_pred EEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCCCCCCeECCEEcHHHHHHHhhC--
Confidence 6888865 12 122222467999999999999999999999999999999 688999999999999988764432
Q ss_pred CCccccCChHHHHHHHHHHHHCCC--cEEEEeCCCCchhhhhhcCCceeeEEe
Q 008588 76 KSRVGRGGMTAKVNAAYCAACAGI--PVVITSGFAMDSIIKVLEGKRVGTLFH 126 (560)
Q Consensus 76 ~~~~~tggM~~K~~aa~~~~~~gi--~v~I~~g~~~~~i~~~~~G~~~GT~~~ 126 (560)
+.+.+|||.+|++||..+.++|+ +++|++ ++++.++++|+..||++.
T Consensus 261 -g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 261 -GHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp -TCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred -CCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence 23667999999999999999999 799997 677888999988999885
No 69
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.78 E-value=3e-19 Score=177.14 Aligned_cols=113 Identities=23% Similarity=0.321 Sum_probs=93.7
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||+.|. .+..|+|+|++|+++|.+++||.|+|+|||||||++|| ++|++++|++++++|+.+ .
T Consensus 130 ipVi~~~------~g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~-~-------- 194 (247)
T 2a1f_A 130 VVIFSAG------TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVID-K-------- 194 (247)
T ss_dssp EEEEEST------TSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHH-T--------
T ss_pred EEEEeCC------cCCCCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHH-c--------
Confidence 5788871 25578999999999999999999999999999999999 599999999999988764 1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecCCC
Q 008588 80 GRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRDAH 130 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~~~ 130 (560)
+.++| |++++..|.+.|++++|+|+++|+.+.++++|+..||+|....|
T Consensus 195 g~~~m--~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~~~ 243 (247)
T 2a1f_A 195 ELKVM--DLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEGHH 243 (247)
T ss_dssp TCCSS--CHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC--
T ss_pred Ccccc--CHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeeccc
Confidence 34777 77899999999999999999999999999999999999987643
No 70
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.77 E-value=4.7e-19 Score=176.25 Aligned_cols=111 Identities=21% Similarity=0.289 Sum_probs=99.3
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEee-cCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSR 78 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~lt-dVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~ 78 (560)
|||+.| ..+..++|+|++|+++|.+++||.|+|+| ||||||++|| ++|++++|++|++.|+.+
T Consensus 129 IpVi~~------~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~--------- 193 (252)
T 1z9d_A 129 IVVFGA------GIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK--------- 193 (252)
T ss_dssp EEEEES------TTSCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT---------
T ss_pred EEEEeC------CcCCCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHh---------
Confidence 578887 12556999999999999999999999999 9999999999 599999999999887753
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 79 VGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 79 ~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
.+.++| |++|+..+.+.|++++|+||++|+.+.++++|+..||++.+.
T Consensus 194 ~~~~~m--k~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 241 (252)
T 1z9d_A 194 RGLKIM--DATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 241 (252)
T ss_dssp TTCCCS--CHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred cccccc--CHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecC
Confidence 135788 899999999999999999999999999999998899999876
No 71
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.77 E-value=5e-19 Score=181.57 Aligned_cols=118 Identities=25% Similarity=0.275 Sum_probs=99.0
Q ss_pred CCcccCC----ccccCCCCCc-----eechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHH
Q 008588 1 MPVSFDN----RNNFQDSSGI-----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEI 71 (560)
Q Consensus 1 ~Pv~~gd----~~~~~~~~~~-----~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~ 71 (560)
|||++|+ +..+++ +.. ++|+|++|+++|.+|+||.|+|+|||||||+ ||++|++++|++++.+++.+.+
T Consensus 188 IpI~~g~~g~pv~~~~~-g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~~p~a~~i~~i~~~e~~~~~ 265 (316)
T 2e9y_A 188 AVVALGGGGVPVVERPG-GVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAV-NYGREGERWLRRAAASELKKYL 265 (316)
T ss_dssp EEEECGGGCEEEEECTT-SCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTTSTTCEECSEEEHHHHHHHH
T ss_pred EEEEECCCCCCeeECCC-CCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCCCCCCcCCcEEcHHHHHHHH
Confidence 5888873 344543 433 4599999999999999999999999999999 7888999999999998887644
Q ss_pred hcCCCCccccCChHHHHHHHHHHHHCCC-cEEEEeCCCCchhhhhhcCCceeeEEec
Q 008588 72 TFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEGKRVGTLFHR 127 (560)
Q Consensus 72 ~~~~~~~~~tggM~~K~~aa~~~~~~gi-~v~I~~g~~~~~i~~~~~G~~~GT~~~~ 127 (560)
.. +.+++|||.+|+++|..+.++|+ +++|+| ++++.++++| ..||++.+
T Consensus 266 ~~---g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 266 RE---GHFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp HT---TCSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred hc---CCCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence 32 35788999999999999999999 799997 6778888888 68999864
No 72
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.77 E-value=1.4e-19 Score=179.03 Aligned_cols=116 Identities=26% Similarity=0.345 Sum_probs=92.7
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||++| +..|+|||++|+++|.+++||.|+|+|||||||++|| ++|++++|++|++.|+.+.+.. ...
T Consensus 127 IpVi~g--------g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~---~g~ 195 (244)
T 2brx_A 127 IPVMGG--------THPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGK---GIE 195 (244)
T ss_dssp BCEECC--------CSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC------
T ss_pred EEEEcC--------CCCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhc---cCC
Confidence 688888 3457899999999999999999999999999999999 5899999999999988754332 134
Q ss_pred ccCChHHHHHH-HHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEec
Q 008588 80 GRGGMTAKVNA-AYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 127 (560)
Q Consensus 80 ~tggM~~K~~a-a~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~ 127 (560)
.+|||.+|..+ +..+.+.+++++|+||++|+.+.++++|+..||++.+
T Consensus 196 ~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 196 KAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 244 (244)
T ss_dssp -----CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred CCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence 57887766554 5555568999999999999999999999889999853
No 73
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.77 E-value=4.8e-19 Score=174.75 Aligned_cols=110 Identities=20% Similarity=0.295 Sum_probs=96.7
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||+.|. .+..|+|||++|+++|.+++||.|+|+|||||||++|| ++|++++|++++++|+.+ .
T Consensus 129 ipVv~g~------~g~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~-~-------- 193 (239)
T 1ybd_A 129 VVIFAAG------TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALL-K-------- 193 (239)
T ss_dssp EEEEEST------TSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHH-T--------
T ss_pred EEEEECC------ccCCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHH-h--------
Confidence 4677642 24568999999999999999999999999999999999 599999999999988764 2
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEec
Q 008588 80 GRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 127 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~ 127 (560)
+.++| |++++..+.++|++++|+|+++|+.+.++++|+..||++.+
T Consensus 194 g~~~m--~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 194 NLKVM--DATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp TCCSS--CHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred ccccc--CHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 34677 77899999999999999999999999999999889999864
No 74
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.77 E-value=4.1e-19 Score=178.37 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=100.3
Q ss_pred CCcccCCccccCC-----CC-CceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhc
Q 008588 1 MPVSFDNRNNFQD-----SS-GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITF 73 (560)
Q Consensus 1 ~Pv~~gd~~~~~~-----~~-~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~ 73 (560)
|||++|+...+.. .+ ..++|||++|+++|.+++||.|+++|||||||++|| ++|++++|++++++|+.+ +..
T Consensus 143 ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~-~~~ 221 (270)
T 2ogx_B 143 AVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKA-KGL 221 (270)
T ss_dssp EEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHH-TTC
T ss_pred EEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHH-Hhc
Confidence 6999998654421 12 356999999999999999999999999999999999 699999999999988875 322
Q ss_pred CCCCccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEec
Q 008588 74 GDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 127 (560)
Q Consensus 74 ~~~~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~ 127 (560)
+ + ....|||.+|+++|. .+++++|+||++|+.+.++++|+..||++.+
T Consensus 222 ~-g-~~~~ggm~~kl~aa~----~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 222 H-D-SILEFPVLDLLQSAQ----HVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp C-C-TTSCHHHHHHHHHCS----SCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred C-C-CcccHHHHHHHHHhh----cCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 2 1 134489999999985 4579999999999999999999889999875
No 75
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.75 E-value=1.4e-18 Score=171.43 Aligned_cols=108 Identities=20% Similarity=0.295 Sum_probs=94.5
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||++|. .+..|+|||++|+++|.+++||.|+++|||||||++|| .+|++++|+++++.|+.+ .
T Consensus 130 ipVi~~~------~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---------~ 194 (240)
T 4a7w_A 130 VVIFGAG------TGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALI---------G 194 (240)
T ss_dssp EEEEEST------TSCTTSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHH---------S
T ss_pred EEEEeCC------CCCCCCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHh---------c
Confidence 5788872 35568999999999999999999999999999999999 599999999999987753 1
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCC-ceeeEE
Q 008588 80 GRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGK-RVGTLF 125 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~-~~GT~~ 125 (560)
+.++| |+.|+..|.++|++++|+||++|+++.+.+.|+ ..||.+
T Consensus 195 g~~~m--~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 195 DIEVM--DDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp SCCSS--CHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred Ccccc--HHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 36788 679999999999999999999999999887665 579976
No 76
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.75 E-value=1.1e-18 Score=170.00 Aligned_cols=114 Identities=25% Similarity=0.265 Sum_probs=92.8
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||++| +..|+|+|++|+++|.+++||.|+++|||||||++|| ++|++++|+++++.++.+ +... .+.
T Consensus 104 ipVi~~--------g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~-~~~~--~g~ 172 (219)
T 2ij9_A 104 VVVMGG--------TFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVE-IVSR--SSA 172 (219)
T ss_dssp EEEECC--------CSSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHH-HTCC-----
T ss_pred EEEEeC--------CCCCCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHH-HHhc--CCC
Confidence 578887 3467899999999999999999999999999999999 599999999999998875 3221 123
Q ss_pred ccCChHHH-HHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEe
Q 008588 80 GRGGMTAK-VNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 126 (560)
Q Consensus 80 ~tggM~~K-~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~ 126 (560)
.+|||.+| ..|+..+.+.+++++|+|| +|+.+.++++|+..||++.
T Consensus 173 ~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 173 KAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp --CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred CCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 46776554 5566667778999999999 9999998999988999873
No 77
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.74 E-value=2e-18 Score=173.82 Aligned_cols=117 Identities=26% Similarity=0.295 Sum_probs=94.7
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCccc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVG 80 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~~ 80 (560)
|||++++..... ...++|+|++|+++|.+|+||.|||||||||||+ ||++|++++|++++.+++++.+. .+.++
T Consensus 199 iPv~~~~~~~~G--~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~~p~a~~I~~it~~e~~~li~---~g~~~ 272 (317)
T 3kzf_A 199 IPCKRENKVISG--VDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYKKPDERKLEEIKLSEILALEK---DGHFA 272 (317)
T ss_dssp EEEEECSSCEEE--CSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSSCSSCEECCEEEHHHHHHHHT---TTSCC
T ss_pred CCcccCCCcccc--eEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCCCCCCeECcCcCHHHHHHHHh---cCCCC
Confidence 377776443331 2347999999999999999999999999999999 89889999999999998886443 24578
Q ss_pred cCChHHHHHHHHHHHHC-CCcEEEEeCCCCchhhhhhcCCceeeEEec
Q 008588 81 RGGMTAKVNAAYCAACA-GIPVVITSGFAMDSIIKVLEGKRVGTLFHR 127 (560)
Q Consensus 81 tggM~~K~~aa~~~~~~-gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~ 127 (560)
+|||.+|+++|..+++. +.+++|+|+ +.+.++++|+ .||++.+
T Consensus 273 ~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~ 316 (317)
T 3kzf_A 273 AGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIK 316 (317)
T ss_dssp --CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEec
Confidence 99999999999999874 567999995 4577888887 7999875
No 78
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.74 E-value=4.9e-18 Score=171.69 Aligned_cols=116 Identities=28% Similarity=0.378 Sum_probs=101.0
Q ss_pred CCcccCCccccCCCCCce-echhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~-~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||+++. ..+. .|..| +|+|++|+++|.+++||.|+++|||||||++ | ++|++++++++.+.+. ...
T Consensus 162 IpVi~~v-~~~~-~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~----~--~~i~~i~~~e~~~~~~----~g~ 229 (282)
T 2bty_A 162 IPVIAPV-GIGE-DGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD----G--KLISTLTPDEAEELIR----DGT 229 (282)
T ss_dssp EEEEESE-EECS-SSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET----T--EECCEECHHHHHHHHT----TTC
T ss_pred EEEECCC-ccCC-CCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC----c--hhhhhCCHHHHHHHHH----cCC
Confidence 6899975 5555 36666 5999999999999999999999999999997 3 9999999998875332 346
Q ss_pred ccCChHHHHHHHHHHHHCCCc-EEEEeCCCCchh-hhhhcCCceeeEEecC
Q 008588 80 GRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 128 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~-v~I~~g~~~~~i-~~~~~G~~~GT~~~~~ 128 (560)
++|||.+|++||..+.++|++ ++|+||+.|+.+ .++++++..||++.+.
T Consensus 230 ~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 230 VTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp SCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred CCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 899999999999999999998 999999999998 7888888899999765
No 79
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.74 E-value=5.1e-18 Score=173.86 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=96.9
Q ss_pred CCcccC----CccccCCC--C-CceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhc
Q 008588 1 MPVSFD----NRNNFQDS--S-GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITF 73 (560)
Q Consensus 1 ~Pv~~g----d~~~~~~~--~-~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~ 73 (560)
|||++| .++.+.+. + ..|+|+|++|+++|.+++||.|+++|||||||++|| +|++++|++++++++.+.+..
T Consensus 188 IpV~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p-~~~a~~i~~i~~~e~~~~~~~ 266 (314)
T 1e19_A 188 IVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG-TEKEQWLREVKVEELRKYYEE 266 (314)
T ss_dssp EEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT-STTCEECCEEEHHHHHHHHHT
T ss_pred EEEEeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC-CCCCeECCEECHHHHHHHHhC
Confidence 577877 44544321 2 247999999999999999999999999999999999 799999999999888764432
Q ss_pred CCCCccccCChHHHHHHHHHHHH-CCCcEEEEeCCCCchhhhhhcCCceeeEEec
Q 008588 74 GDKSRVGRGGMTAKVNAAYCAAC-AGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 127 (560)
Q Consensus 74 ~~~~~~~tggM~~K~~aa~~~~~-~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~ 127 (560)
+.+++|||.+|+++|..+++ .+++++|+|+ +.+.++++|. .||++.+
T Consensus 267 ---g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~~g~-~GT~i~~ 314 (314)
T 1e19_A 267 ---GHFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEGK-TGTQVLP 314 (314)
T ss_dssp ---TCSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHHTTS-SSEEEEC
T ss_pred ---CCcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHHcCC-CCeEEcC
Confidence 35789999999999988665 6778999984 5688888874 7999863
No 80
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.73 E-value=7.5e-18 Score=171.69 Aligned_cols=117 Identities=24% Similarity=0.349 Sum_probs=101.5
Q ss_pred CCcccCCccccCCCCCcee-chhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFW-DNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~-~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||+++ +..+. .|..|+ |+|++|+++|.+++||.|+++|||||||++ ++++|++++..++.+.+. +..
T Consensus 178 IpVi~~-v~~~~-~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~-----~a~~i~~i~~~e~~~~~~----~~~ 246 (300)
T 2buf_A 178 IPVIAP-IGVGS-NGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK-----QGQVLTGLSTEQVNELIA----DGT 246 (300)
T ss_dssp EEEEEE-EEECT-TSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT-----TSCBCCEECHHHHHHHHH----TTC
T ss_pred EEEEcC-ceeCC-CCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC-----CCcChhhCCHHHHHHHHH----cCC
Confidence 588884 45565 366664 999999999999999999999999999997 489999999998876433 346
Q ss_pred ccCChHHHHHHHHHHHHCCCc-EEEEeCCCCchh-hhhhcCCceeeEEecC
Q 008588 80 GRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 128 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~-v~I~~g~~~~~i-~~~~~G~~~GT~~~~~ 128 (560)
++|||.+|+++|..+.++|++ ++|+||+.|+.+ .++++++..||++.+.
T Consensus 247 ~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 247 IYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp SCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred CCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 799999999999999999999 999999999987 7888888899999875
No 81
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.71 E-value=1.4e-17 Score=166.22 Aligned_cols=114 Identities=33% Similarity=0.373 Sum_probs=99.1
Q ss_pred CCcccCCccccCCCCC-ceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSG-IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~-~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||++|. ..+.+ |. .++|+|++|+++|.+++|| |+++|||||||++ ++++|++++++|+.+.+. +..
T Consensus 142 ipVi~~~-g~~~~-g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~-----d~~~i~~i~~~e~~~l~~----~~~ 209 (258)
T 1gs5_A 142 LPVVSSI-GVTDE-GQLMNVNADQAATALAATLGAD-LILLSDVSGILDG-----KGQRIAEMTAAKAEQLIE----QGI 209 (258)
T ss_dssp EEEECSE-EECTT-SCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCT-----TSCBCCEECHHHHHHHHH----TTC
T ss_pred EEEEeCC-cCCCC-CcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECC-----CCCCCcccCHHHHHHHHh----cCC
Confidence 6999998 44543 54 5799999999999999999 9999999999997 379999999999886432 357
Q ss_pred ccCChHHHHHHHHHHHH-CCCcEEEEeCCCCchhhhhhcCCceeeEEe
Q 008588 80 GRGGMTAKVNAAYCAAC-AGIPVVITSGFAMDSIIKVLEGKRVGTLFH 126 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~-~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~ 126 (560)
++|||.+|+.+|..+++ .+++++|+||++|+.+.++++|+..||++.
T Consensus 210 ~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 210 ITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp SCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 89999999999998876 689999999999999999999988999885
No 82
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.71 E-value=1.7e-17 Score=169.80 Aligned_cols=104 Identities=22% Similarity=0.260 Sum_probs=89.5
Q ss_pred CceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCccccCChHHHHHHHHHHH
Q 008588 16 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAA 95 (560)
Q Consensus 16 ~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~~tggM~~K~~aa~~~~ 95 (560)
..++|||++|+++|.+++||+|||||||||||+++| +|++++|++++.+++.+++.. +.+++|||.||++||..++
T Consensus 227 ~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~-~~~~~~i~~it~~e~~~~~~~---g~~~~GgM~pKv~Aa~~~v 302 (332)
T 4axs_A 227 DGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFN-KPTQKALKTVDVKALNNFINQ---DQFAKGSMLPKIKAAMGFV 302 (332)
T ss_dssp SSCCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTT-STTCEECSSCBHHHHHHHHHT---TCSCTTTTHHHHHHHHHHH
T ss_pred eeeechHHHHHHHHHHhCCceEEEEecCCceEcCCC-CcchhhcccCCHHHHHHHHHC---CCcCcCCcHHHHHHHHHHH
Confidence 358999999999999999999999999999999877 588999999999999875543 4588999999999999999
Q ss_pred HCCC--cEEEEeCCCCchhhhhhcCCceeeEEec
Q 008588 96 CAGI--PVVITSGFAMDSIIKVLEGKRVGTLFHR 127 (560)
Q Consensus 96 ~~gi--~v~I~~g~~~~~i~~~~~G~~~GT~~~~ 127 (560)
+.|. .++|.+ ++.+.+++.|+ .||++.+
T Consensus 303 ~~g~g~~~iI~~---~~~~~~~l~g~-~GT~IvA 332 (332)
T 4axs_A 303 NGHPNRSAIIAD---LSKVEDALKGL-SGTKIIA 332 (332)
T ss_dssp TTCTTCEEEEEC---STTHHHHTTTS-SSEEEBC
T ss_pred HhCCCcEEEECC---HHHHHHHHCCC-CCcEEeC
Confidence 9765 477755 67788889887 6999864
No 83
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.70 E-value=2.8e-17 Score=163.69 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=95.9
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEee-cCCccccCCC-CCCCCceeeeeehhchHHHHhcCCCCc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSR 78 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~lt-dVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~~~~ 78 (560)
|||+.|. .+..++++|++|+++|.+|+||.|+++| ||||||++|| ++|++++|++|+++++.+ +
T Consensus 135 IpVi~gg------~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~-~------- 200 (255)
T 2jjx_A 135 IVIFGGG------NGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVR-Q------- 200 (255)
T ss_dssp EEEEEST------TSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHH-T-------
T ss_pred EEEEeCC------CCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHH-c-------
Confidence 5888871 2445688999999999999999999999 9999999999 599999999999877753 1
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 79 VGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 79 ~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
++|+|.+ .|+..+.+.|++++|+||++|+.+.++++|+..||++.++
T Consensus 201 -G~~~m~~--~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 201 -NIQVMDQ--AALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp -TCCSSCH--HHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred -CCccCHH--HHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 4688875 5777777799999999999999999999998899999874
No 84
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.68 E-value=1.8e-16 Score=170.87 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=106.4
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCccc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVG 80 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~~ 80 (560)
|||+++. ..+.+....++|+|++|+.+|.+++||.|+|+|||||||++ ++++|++|+..++.+.+.. +
T Consensus 187 ipIi~~~-~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~-----~~~~i~~i~~~e~~~~~~~------g 254 (456)
T 3d2m_A 187 IVWMPPL-GHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP-----DGTLAETLSAQEAQSLAEH------A 254 (456)
T ss_dssp EEEECSE-EECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT-----TSCBCSEEEHHHHHHHHTT------C
T ss_pred eEEECCc-ccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC-----CCCccccCCHHHHHHHHhc------c
Confidence 6899975 44443234579999999999999999999999999999997 6899999999988764321 2
Q ss_pred cCChHHHHHHHHHHHHCCCc-EEEEeCCCCchh-hhhhcCCceeeEEecCCCccc---chhhHHHHHHH
Q 008588 81 RGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRDAHLWV---KQVGAREMAVA 144 (560)
Q Consensus 81 tggM~~K~~aa~~~~~~gi~-v~I~~g~~~~~i-~~~~~G~~~GT~~~~~~~~~~---~~~~v~~av~~ 144 (560)
+|||.+|++||..++++|++ ++|+||+.|+.+ ..+++++..||++.+..-... +++|++...+.
T Consensus 255 ~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~~~~IR~a~~~D~~~i~~l 323 (456)
T 3d2m_A 255 ASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIAAL 323 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCCCCEEEECCGGGHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecccceeeCCCCHHHHHHHHHH
Confidence 49999999999999999996 999999999998 667788888999987531111 46676665443
No 85
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.65 E-value=2.8e-16 Score=157.64 Aligned_cols=96 Identities=25% Similarity=0.407 Sum_probs=83.7
Q ss_pred CCcccCCccccCCCCCce-echhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhchHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~-~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~~~~~~~~~~~~~~ 79 (560)
|||+++ +..+++ |..| +|+|++|+.+|.+|+||.|+|+|||||||+ ++++|++++.+|+.+.+. +.+
T Consensus 174 IPVi~~-v~~~~~-G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~------d~~~I~~i~~~e~~~l~~----~~~ 241 (279)
T 3l86_A 174 IPILAS-LGYSKE-GDMLNINADYLATAVAVALAADKLILMTNVKGVLE------NGAVLEKITSHQVQEKID----TAV 241 (279)
T ss_dssp EEEEES-EEECTT-SCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE------TTEECCEEEGGGSHHHHH----TTS
T ss_pred EEEECC-cEECCC-CCEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc------CCEehhhccHHHHHHHHh----CCC
Confidence 699999 566653 6666 599999999999999999999999999995 389999999998886443 347
Q ss_pred ccCChHHHHHHHHHHHHCCCc-EEEEeCCC
Q 008588 80 GRGGMTAKVNAAYCAACAGIP-VVITSGFA 108 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~-v~I~~g~~ 108 (560)
++|||.+|++||..|.+.|++ ++|+|++.
T Consensus 242 ~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~ 271 (279)
T 3l86_A 242 ITAGMIPKIESAAKTVAAGVGQVLIGDNLL 271 (279)
T ss_dssp SCTTHHHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred CcCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 899999999999999999998 99999864
No 86
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.64 E-value=3.6e-16 Score=158.63 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=94.4
Q ss_pred CCcccCCccccCCCCC-ceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhc-hHHHHhcCCCCc
Q 008588 1 MPVSFDNRNNFQDSSG-IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSR 78 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~-~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~-~~~~~~~~~~~~ 78 (560)
|||++|+. .+.+ |. .++|+|++|+.+|.+|+||.|+++|||||||++ |++++|++++..+ +...+. +.
T Consensus 182 IpVi~~~g-~~~~-G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~----~~~~~i~~i~~~e~~~~l~~----~~ 251 (307)
T 3zzh_A 182 LPILTSLA-ETAS-GQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMK----QS 251 (307)
T ss_dssp EEEECCCE-ECTT-CBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET----TTTEECCEEEHHHHHHHHHT----ST
T ss_pred EEEEeCCe-ECCC-CcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC----CCCcCCcccCHHHHHHHHHh----CC
Confidence 69999984 4543 43 469999999999999999999999999999986 4799999999875 444332 35
Q ss_pred cccCChHHHHHHHHHHHHC---CCcEEEEeCCCCchh-hhhhcCCceeeEEecC
Q 008588 79 VGRGGMTAKVNAAYCAACA---GIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 128 (560)
Q Consensus 79 ~~tggM~~K~~aa~~~~~~---gi~v~I~~g~~~~~i-~~~~~G~~~GT~~~~~ 128 (560)
.++|||.+|+++++.|.+. |.+++|++ ++.+ .++++++..||++.+.
T Consensus 252 ~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 252 WVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp TSCHHHHHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCSEEEECC
T ss_pred CCCCcHHHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCcEEEecC
Confidence 6899999999987666664 88899998 7776 6678888899999876
No 87
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.58 E-value=1.9e-15 Score=163.12 Aligned_cols=110 Identities=24% Similarity=0.337 Sum_probs=95.6
Q ss_pred CCcccCCccccCCCCCc----eechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCC
Q 008588 1 MPVSFDNRNNFQDSSGI----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGD 75 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~----~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~ 75 (560)
|||++|+...+++ |.. ++++|++|+++|.+++||.|+++|||||||++|| .+|++++|+++++.|+.+..
T Consensus 187 ipVv~G~~g~~~~-g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~---- 261 (473)
T 3c1m_A 187 IPVVTGFIGTTEE-GYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELA---- 261 (473)
T ss_dssp EEEEESSEEEETT-SCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHH----
T ss_pred EEEEeCCcccCCC-CCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCCcceeCCCCCCCCCeEecccCHHHHHHHH----
Confidence 6999999998764 432 4799999999999999999999999999999999 58999999999999987532
Q ss_pred CCccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 76 KSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 76 ~~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
..|.+||.+| ++..+.++|+|++|.|+++|+ ..||++.+.
T Consensus 262 --~~g~~~m~~~--a~~~a~~~gi~v~I~~~~~~~---------~~GT~i~~~ 301 (473)
T 3c1m_A 262 --YFGAKVLHPR--TIEPAMEKGIPILVKNTFEPE---------SEGTLITND 301 (473)
T ss_dssp --HTTCTTSCGG--GHHHHHHHTCCEEEEETTSTT---------SCCEEEESC
T ss_pred --hcCCcchHHH--HHHHHHHcCCEEEEEecCCCC---------CceEEEecc
Confidence 2456899996 889999999999999999885 469999875
No 88
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.57 E-value=4.2e-15 Score=158.65 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=97.3
Q ss_pred CCcccCCccccCCCCC-ceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehh-chHHHHhcCCCCc
Q 008588 1 MPVSFDNRNNFQDSSG-IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSR 78 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~-~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~-~~~~~~~~~~~~~ 78 (560)
|||+.+. ..+.+ |. .++|+|++|+.+|.+|+||.||++|||||||++ ++++|++|+.. ++...+. ..
T Consensus 192 IpVi~p~-g~~~~-G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~-----~~~lI~~i~~~~e~~~l~~----~~ 260 (460)
T 3s6g_A 192 AAILACL-GETPD-GTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDE-----DGDILSSINLATDFGDLMQ----AD 260 (460)
T ss_dssp EEEEECE-EECTT-CCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCT-----TSSBCCEEEHHHHHHHHHH----CS
T ss_pred EEEEECc-eECCC-CcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCeecceeCcHHHHHHHHh----cC
Confidence 6888864 33433 54 469999999999999999999999999999986 58999999986 6664333 34
Q ss_pred cccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhh-hhhcCCceeeEEecC
Q 008588 79 VGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSII-KVLEGKRVGTLFHRD 128 (560)
Q Consensus 79 ~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~-~~~~G~~~GT~~~~~ 128 (560)
.++|||.+|+++|..+++.+.+++|++|+.|+.+. .+++++..||++.+.
T Consensus 261 ~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 261 WVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp SSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 78999999999999999854469999999999885 578888899999886
No 89
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.55 E-value=6.9e-15 Score=156.64 Aligned_cols=115 Identities=16% Similarity=0.167 Sum_probs=94.3
Q ss_pred CCcccCCccccCCCCC-ceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehhc-hHHHHhcCCCCc
Q 008588 1 MPVSFDNRNNFQDSSG-IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSR 78 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~-~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~~-~~~~~~~~~~~~ 78 (560)
|||++|+ ..+.+ |. .++|+|++|+.+|.+|+||.||++|||||||++ |++++|++|+..+ +...+ . +.
T Consensus 182 IPVi~~~-g~~~~-G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~----~~~~lI~~it~~e~~~~li-~---~~ 251 (464)
T 4ab7_A 182 LPILTSL-AETAS-GQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLM-K---QS 251 (464)
T ss_dssp EEEEESE-EECTT-CBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT----TTCCEECEEEHHHHHHHHH-T---CS
T ss_pred EEEEcCC-cCCCC-CCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC----CCCcCCcccCHHHHHHHHH-h---cC
Confidence 6999997 44543 44 469999999999999999999999999999987 4799999999875 44333 2 45
Q ss_pred cccCChHHHHHHHHHHHHC---CCcEEEEeCCCCchh-hhhhcCCceeeEEecC
Q 008588 79 VGRGGMTAKVNAAYCAACA---GIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 128 (560)
Q Consensus 79 ~~tggM~~K~~aa~~~~~~---gi~v~I~~g~~~~~i-~~~~~G~~~GT~~~~~ 128 (560)
.++|||.+|+++++.|.+. |.+++|++ ++.+ .++++++..||++.+.
T Consensus 252 ~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 252 WVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred CCCCcHHHHHHHHHHHHHhcccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 7899999999988777764 78899998 5554 5678888899999876
No 90
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.55 E-value=6.3e-15 Score=159.65 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=95.1
Q ss_pred CCcccCCccccC-CCCCc---eechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCC
Q 008588 1 MPVSFDNRNNFQ-DSSGI---FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGD 75 (560)
Q Consensus 1 ~Pv~~gd~~~~~-~~~~~---~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~ 75 (560)
|||++|+...+. +...+ ++++|++|+++|..++||.|+++|||||||++|| .+|++++|++|+++|+.+ +.
T Consensus 209 IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~e-la--- 284 (510)
T 2cdq_A 209 VPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAE-LA--- 284 (510)
T ss_dssp EEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHH-HH---
T ss_pred EEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHH-HH---
Confidence 699999998875 42222 4779999999999999999999999999999999 589999999999999875 43
Q ss_pred CCccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 76 KSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 76 ~~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
..|+++|.+| ++..+.++|||++|.|+++|+ ..||++.+.
T Consensus 285 --~~Ga~vmh~~--a~~~a~~~gIpv~I~n~~~p~---------~~GT~I~~~ 324 (510)
T 2cdq_A 285 --YFGAQVLHPQ--SMRPAREGEIPVRVKNSYNPK---------APGTIITKT 324 (510)
T ss_dssp --HHHSSCCCHH--HHHHHHHHTCCEEEEETTSTT---------SCCEEEESC
T ss_pred --hcCcchhHHH--HHHHHHHCCCeEEEEccCcCC---------CCCeEEecc
Confidence 2577889875 888999999999999999885 368988765
No 91
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.52 E-value=9.1e-15 Score=155.89 Aligned_cols=110 Identities=20% Similarity=0.203 Sum_probs=92.1
Q ss_pred CCcccCCccccCCCCC----ceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCC
Q 008588 1 MPVSFDNRNNFQDSSG----IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGD 75 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~----~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~ 75 (560)
|||+.|+...+.+ +. -++++|++|+++|.+++||.|+++|||||||++|| .+|+|++|++++++|+.+ +.
T Consensus 165 v~Vv~Gf~g~~~~-g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~e-la--- 239 (446)
T 3tvi_A 165 KAVIPGFYGSSFN-GDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRE-LS--- 239 (446)
T ss_dssp SEECCCSEEECTT-SCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHH-TT---
T ss_pred eEEeeCceecCCC-CCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHH-HH---
Confidence 6999999888764 43 24789999999999999999999999999999999 599999999999998875 42
Q ss_pred CCccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 76 KSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 76 ~~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
..|.++| +..|+..+.++|||++|.|+++|+ ..||++.+.
T Consensus 240 --~~Ga~vl--~~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~i~~~ 279 (446)
T 3tvi_A 240 --YMGATVL--HEEAIFPVKDSGIPINIKNTNKPS---------DPGTLILSD 279 (446)
T ss_dssp --TC----C--CSTTTHHHHHSSCCEEEEETTBTT---------SCCEEEECT
T ss_pred --hCCCCcc--hHHHHHHHHHcCCeEEEecCCCCC---------CCCEEEecC
Confidence 2456666 568999999999999999999885 458999876
No 92
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.52 E-value=1.1e-14 Score=154.98 Aligned_cols=110 Identities=20% Similarity=0.273 Sum_probs=84.2
Q ss_pred CCcccCCccccCCCCCc----eechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCC
Q 008588 1 MPVSFDNRNNFQDSSGI----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGD 75 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~----~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~ 75 (560)
|||+.|....+.+.|.. ++++|++|+++|.+|+||.|+++|||||||++|| .+|++++|++|+++|+.+....
T Consensus 130 ipVv~g~~g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~-- 207 (421)
T 3ab4_A 130 ICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAV-- 207 (421)
T ss_dssp EEEC------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHT--
T ss_pred EEEEeCCcCcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhc--
Confidence 69999987776531322 3699999999999999999999999999999999 5899999999999998863321
Q ss_pred CCccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 76 KSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 76 ~~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
|.|..|+.++..+.++|+|++|.|+++| ..||++.+.
T Consensus 208 ------Ga~v~~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 208 ------GSKILVLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp ------TCCSSCHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred ------CCcCchHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence 3356678899999999999999999887 369999765
No 93
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.51 E-value=1e-14 Score=155.87 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=96.1
Q ss_pred CCcccCCccccCCCCCceechhHHHHHHHHHcCCCeEEEeecCCccccCCCCCCCCceeeeeehh-chHHHHhcCCCCcc
Q 008588 1 MPVSFDNRNNFQDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRV 79 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP~~p~a~~i~~i~~~-~~~~~~~~~~~~~~ 79 (560)
|||+... ..+.+....++|+|++|+.+|.+|+||.||++|||||||++ ++++|++++.. ++...+. ...
T Consensus 195 IpVi~pv-g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~-----~~~lI~~i~~~~e~~~l~~----~~~ 264 (467)
T 3s6k_A 195 IPVITSL-GETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDA-----EGKLIDSINLSTEYDHLMQ----QPW 264 (467)
T ss_dssp BCCCCSC-CCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCS-----SCCCCCCCCTTTTTHHHHT----SSS
T ss_pred EEEEECc-eECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCC-----CCCCccccChHHHHHHHHh----cCC
Confidence 6888832 12332234579999999999999999999999999999986 58999999986 6665332 347
Q ss_pred ccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhh-hhhcCCceeeEEecC
Q 008588 80 GRGGMTAKVNAAYCAACAGIPVVITSGFAMDSII-KVLEGKRVGTLFHRD 128 (560)
Q Consensus 80 ~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~-~~~~G~~~GT~~~~~ 128 (560)
++|||.+|+++|..+++.+.+++|++++.|+.+. .+++++..||++.+.
T Consensus 265 ~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 265 INGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp CCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 8999999999999998854469999999999885 577888899998876
No 94
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.50 E-value=2e-14 Score=159.08 Aligned_cols=109 Identities=23% Similarity=0.229 Sum_probs=91.5
Q ss_pred CCcccCCccccCCCC--C----ceechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhc
Q 008588 1 MPVSFDNRNNFQDSS--G----IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITF 73 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~--~----~~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~ 73 (560)
|||+.|....+++ | . -++++|++|+++|.+|+||.|+++|||||||++|| .+|++++|++++++|+.+ +.
T Consensus 130 IpVv~Gf~g~~~~-g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~e-la- 206 (600)
T 3l76_A 130 VVVVAGFQGISSV-EHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLE-LA- 206 (600)
T ss_dssp EEEEECEEEC-----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHH-TG-
T ss_pred EEEEECCeecCCC-CCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHH-HH-
Confidence 6899998877753 4 1 24679999999999999999999999999999999 599999999999998875 42
Q ss_pred CCCCccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 74 GDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 74 ~~~~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
..|+|+|.+ .|+..+.++|+|++|.|++++ ..||++...
T Consensus 207 ----~~G~~vm~p--~a~~~a~~~gipv~I~n~~~~----------~~GT~I~~~ 245 (600)
T 3l76_A 207 ----SLGAKVLHP--RAVEIARNYGIPLVVRSSWSD----------EPGTKVVAP 245 (600)
T ss_dssp ----GGGTTTCCH--HHHHHHHHHTCCEEEEETTCC----------SCCEEEECC
T ss_pred ----hCCCCccHH--HHHHHHHHCCCeEEEEECCCC----------CCCeEEecC
Confidence 267899999 899999999999999999864 258888765
No 95
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.49 E-value=2.5e-14 Score=153.07 Aligned_cols=107 Identities=25% Similarity=0.236 Sum_probs=91.6
Q ss_pred CCcccCCccccCCCCCc----eechhHHHHHHHHHcCCCeEEEeecCCccccCCC-CCCCCceeeeeehhchHHHHhcCC
Q 008588 1 MPVSFDNRNNFQDSSGI----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGD 75 (560)
Q Consensus 1 ~Pv~~gd~~~~~~~~~~----~~~~D~~aa~~A~~l~Ad~li~ltdVdGvy~~dP-~~p~a~~i~~i~~~~~~~~~~~~~ 75 (560)
|||++|+...+++ |.+ ++++|++|+++|.+++||.|+++|||||||++|| .+|++++|++|+++|+.+ +..
T Consensus 178 IpVv~Gf~g~~~~-g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~e-la~-- 253 (449)
T 2j0w_A 178 LVITQGFIGSENK-GRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAE-MAT-- 253 (449)
T ss_dssp EEEEESSEEECTT-SCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHH-HHH--
T ss_pred EEEEeCCeeeCCC-CCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHH-HHh--
Confidence 6999999998864 432 4779999999999999999999999999999999 589999999999998875 321
Q ss_pred CCccccCChHHHH---HHHHHHHHCCCcEEEEeCCCCchhhhhhcCCceeeEEecC
Q 008588 76 KSRVGRGGMTAKV---NAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 128 (560)
Q Consensus 76 ~~~~~tggM~~K~---~aa~~~~~~gi~v~I~~g~~~~~i~~~~~G~~~GT~~~~~ 128 (560)
.| +|+ .++..+.++|+|++|.|+++|+ ..||++.+.
T Consensus 254 -----~G---~kvlh~~a~~~a~~~gi~v~I~~~~~p~---------~~GT~I~~~ 292 (449)
T 2j0w_A 254 -----FG---AKVLHPATLLPAVRSDIPVFVGSSKDPR---------AGGTLVCNK 292 (449)
T ss_dssp -----TT---CTTSCTTTHHHHHHHTCCEEEEESSCTT---------SCCEEEESC
T ss_pred -----cC---CccchHHHHHHHHHCCCeEEEEECCCCC---------CCeeEEecc
Confidence 11 477 7888899999999999999885 469999875
No 96
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=97.34 E-value=0.2 Score=51.95 Aligned_cols=279 Identities=14% Similarity=0.143 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHhcccccccccccccccCCCeeEEEeecceEEEEEEcCC----ChhhHHHHHHHHHHhCCe--EEeeCCc
Q 008588 209 ISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGGK 282 (560)
Q Consensus 209 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~----~P~~~~~~~~~ALaaGNt--vVlKPse 282 (560)
++.+++.++.+.+...+..... ....|.....++.|+--|++-.|- ||...++.+.||-.||+. |+.-|.+
T Consensus 94 i~~A~~~I~~fh~~Q~~~~~~~---~~~~G~~~g~~~~Pi~~VGlYVPGG~A~ypSsvLM~aiPAkVAGV~~Iv~~tPp~ 170 (423)
T 4gic_A 94 LREAAERIRAYAERQKLDSWDY---READGTLLGQKITPLDRVGLYVPGGKAAYPSSVLMNAVPAKVAGVPELIMAVPAP 170 (423)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEE---ECTTSCEEEEEEEECSEEEEECCCSTTCCHHHHHHHHHHHHHHTCSEEEEECCCG
T ss_pred HHHHHHHHHHHHHhcccCCccc---ccCCCCEEEEEEEEecceeEEeeCCCCchhhHHHHhhccHHHhCCCeEEEecCCC
Confidence 4555666666543211111111 112455666788999999999992 565667888899999986 5556654
Q ss_pred c---hHHHHHHHHHHHHHhcccccCcCcEEeec-CCchhhHhhc----CCCCccEEEeecCHHH--HHHHHHhcCCCEEE
Q 008588 283 E---AMRSNAILHKVITSAIPDTVGEKLIGLVT-SREEIPDLLK----LDDVIDLVIPRGSNKL--VSQIKESTKIPVLG 352 (560)
Q Consensus 283 ~---tp~t~~~l~~l~~~al~~alP~gvv~vv~-~~~~~~~~l~----~~~~v~~V~fTGS~~~--G~~i~~~a~~~~~l 352 (560)
. .|.+ +..+++ .|+=.+.. ||...-++|. +=|+||+|+=-|..=| +|+.. .+.--+=
T Consensus 171 ~G~i~p~i-L~AA~l----------~Gv~eIy~vGGAQAIAAlAyGTetI~~VDkIvGPGN~yVa~AKr~v--~g~VgID 237 (423)
T 4gic_A 171 RGELNALV-LAAAYI----------SGVDRVFRIGGAQAVAALAYGTETVPRVDKIVGPGNIYVATAKKLV--FGQVGID 237 (423)
T ss_dssp GGCCCHHH-HHHHHH----------HTCCEEECCCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHH--BTTBEEC
T ss_pred CCCccHHH-HHHHHh----------cCCcEEEEcCChhhhhhhccCCCcccceeEEecCCcHHHHHHHHHh--cCCcCcc
Confidence 3 2322 122222 24445555 5543222232 2478999988887543 23221 2221111
Q ss_pred ecCccceE--EEcCCCCHHHHHHHHHhhcCCCCCcccccceEEEeCccCCcchHHHHHHHHHhcCCeEecCccccccccC
Q 008588 353 HADGICHV--YVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQI 430 (560)
Q Consensus 353 ElGGk~p~--iV~~dADld~Aa~~iv~~~f~n~g~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~~~~pv 430 (560)
-.-|-+=+ |-+++||.+..+..++.-+=.... ..-++|..+ .+|.+++.+++++.-..+
T Consensus 238 m~AGPSEilViAD~~a~p~~vAaDLlsQAEHd~~----a~~iLvT~s---~~la~~V~~~i~~~l~~l------------ 298 (423)
T 4gic_A 238 MVAGPSEILVISDGRTDPDWIAMDLFSQAEHDED----AQAILISPD---AAHLEAVQASIERLLPGM------------ 298 (423)
T ss_dssp CCCCCCEEEEEECSCSCHHHHHHHHHHHHTTCTT----CEEEEEESC---HHHHHHHHHHHHHHGGGC------------
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhhccCCC----CeEEEEeCc---HHHHHHHHHHHHHHHhhC------------
Confidence 12233333 335569999988888876554322 112566554 356666666665421000
Q ss_pred CCCCcccc--cccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhhcC-eeeEEEcCCcCc--CC----
Q 008588 431 PETRLFHH--EYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVD-SAAVFHNASTRF--CD---- 501 (560)
Q Consensus 431 ~~~~~~~e--E~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~-~G~V~VN~~~~~--~~---- 501 (560)
+...+..+ +-+| .|+.++|++||++++|..-- =-.-|.++|.. .+..+++ +|.|++-..+.- .+
T Consensus 299 ~r~~i~~~sl~~~g---~ii~v~~~~ea~~~~N~~AP-EHLel~~~~~~---~~l~~i~nAGaIFlG~~tp~~~GDY~aG 371 (423)
T 4gic_A 299 ERAEVIRTSLERRG---GMILVDDLEQAAAVANRIAP-EHLELSVESPE---VLVESIRNAGAIFMGRYTAEALGDYCAG 371 (423)
T ss_dssp TTHHHHHHHHHHHC---EEEECSSHHHHHHHHHHHCC-SEEEEESSCHH---HHGGGCCCCSEEEEC-------------
T ss_pred ccHHHHHHHHhcCc---eEEEEeehHHHHHHHHhhCh-HHhhhhhCCHH---HHHhhCcEeceeecCCCCchhhhhcCcC
Confidence 11112211 1133 45568999999999999643 35678899965 5667665 999999765431 11
Q ss_pred -CCccCCccceeccccCcccccccchhcceEEEEEE
Q 008588 502 -GARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 536 (560)
Q Consensus 502 -~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~K~v~ 536 (560)
+.-++- +|.. ++.|..++..|...-++.
T Consensus 372 ~NHvLPT---~G~A----r~~sgLsv~~F~K~~s~~ 400 (423)
T 4gic_A 372 PNHVLPT---SGTA----RFSSPLGVYDFQKRSSLI 400 (423)
T ss_dssp ---CCCC---TTGG----GTCCCCCGGGGEEEEEEE
T ss_pred CCccCCC---CCcc----cccCCCCHHHeeeeeeEE
Confidence 000111 1221 234778889998876654
No 97
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=94.49 E-value=5.3 Score=41.46 Aligned_cols=258 Identities=10% Similarity=0.105 Sum_probs=147.3
Q ss_pred CCeeEEEeecceEEEEEEcCC----ChhhHHHHHHHHHHhCCe--EEeeCCcchHHHHHHHHHHHHHhcccccCcCcEEe
Q 008588 237 DGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGL 310 (560)
Q Consensus 237 ~~~~~~~~~~PlGVV~~I~p~----~P~~~~~~~~~ALaaGNt--vVlKPse~tp~t~~~l~~l~~~al~~alP~gvv~v 310 (560)
.|.....++.|+--|++-.|. +|...++.+.||-.||+. |+.-|..-.|.+- ..+++ .|+=.+
T Consensus 113 ~Gv~~gq~~~Pi~rvGlYVPGG~a~ypSsvLM~aiPAkVAGV~~Iv~~tPp~i~p~iL-~AA~l----------~Gv~eI 181 (434)
T 1kae_A 113 PGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEIL-YAAQL----------CGVQDV 181 (434)
T ss_dssp TTEEEEEEEEECSEEEEECCCSSSCCTHHHHHHHHHHHHHTCSEEEEEECSSCCHHHH-HHHHH----------TTCCEE
T ss_pred CCcEEEEEEeehheEEEEecCCCCCchhHHHHhhccHhhcCCCeEEEECCCCCCHHHH-HHHHH----------cCCCEE
Confidence 366667788999999999993 565667888899999985 4455553344332 11222 244445
Q ss_pred ec-CCchhhHhhc----CCCCccEEEeecCH--HHHHHHHHh-cCCCEEEecCccce--EEEcCCCCHHHHHHHHHhhcC
Q 008588 311 VT-SREEIPDLLK----LDDVIDLVIPRGSN--KLVSQIKES-TKIPVLGHADGICH--VYVDKSANLDVAKNIVIDAKI 380 (560)
Q Consensus 311 v~-~~~~~~~~l~----~~~~v~~V~fTGS~--~~G~~i~~~-a~~~~~lElGGk~p--~iV~~dADld~Aa~~iv~~~f 380 (560)
.. ||...-++|. +=|+||+|+=-|.. ..+|+.... .+.--+=-.-|-+= +|-+++||.+..+..++.-+=
T Consensus 182 y~vGGAQAIAAlAyGTetIp~VDkI~GPGN~yVa~AKr~Vs~~~G~VgIDm~AGPSEilViAD~tAnp~~vAaDLLsQAE 261 (434)
T 1kae_A 182 FNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAE 261 (434)
T ss_dssp EECCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHHHCTTSCEESCCCCCCEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eecccHHHHHHHHcCCCCCCCccEEECCCcHHHHHHHHHhHhhcCccccCCCCCCceEEEEeCCCCCHHHHHHHHHHHhc
Confidence 54 5443222222 34789999877774 345544321 22111112223333 333567999998888887655
Q ss_pred CCCCcccccceEEEeCccCCcchHHHHHHHHHhcCCeEecCccccccccCCCCCcccccccCceEEEEEeCCHHHHHHHH
Q 008588 381 DYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDHI 460 (560)
Q Consensus 381 ~n~g~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~~~~~~g~~~~~~~~pv~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 460 (560)
.... ..-++|..| ++|.+++.+++++.-..+ +...+. ++-+..- .|+-++|+|||++++
T Consensus 262 Hd~~----a~aiLvT~s---~~la~~V~~ev~~ql~~l------------pr~~ia-~~sl~~~-~ii~v~~l~ea~~~~ 320 (434)
T 1kae_A 262 HGPD----SQVILLTPA---ADMARRVAEAVERQLAEL------------PRAETA-RQALNAS-RLIVTKDLAQCVEIS 320 (434)
T ss_dssp TCTT----CEEEEEESC---HHHHHHHHHHHHHHHTTC------------TTHHHH-HHHHTTC-EEEECSSHHHHHHHH
T ss_pred cCCC----CcEEEEECC---HHHHHHHHHHHHHHHHhC------------ChHHHH-HHHHHcC-eEEEECCHHHHHHHH
Confidence 4322 112455544 256666665555320000 111122 2222334 677899999999999
Q ss_pred HhcCCCceeEEEecCHHHHHHHHhhc-CeeeEEEcCCcCc-------CCCCccCCccceeccccCcccccccchhcceEE
Q 008588 461 HQHGSAHTDCIVAEDQKVAETFLCQV-DSAAVFHNASTRF-------CDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 532 (560)
Q Consensus 461 N~~~~GL~a~I~t~d~~~a~~~~~~l-~~G~V~VN~~~~~-------~~~~pfG~g~~sG~~~~~~~~~G~~gl~~ft~~ 532 (560)
|..--= -.-|.++|.. .++.++ .+|.|++...+.- .++.-++-+ |.. ++.|..+++.|+..
T Consensus 321 N~~APE-HLel~~~dp~---~~l~~I~nAGaIFlG~~tpe~~GDY~aG~NHvLPT~---G~A----R~~sgLsV~~F~K~ 389 (434)
T 1kae_A 321 NQYGPE-HLIIQTRNAR---ELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTY---GYT----ATCSSLGLADFQKR 389 (434)
T ss_dssp HHHCCS-EEEEESTTHH---HHGGGCCSCSEEEESTTCCHHHHHHTSSSCCCCCCT---TGG----GTCCCSCGGGGEEE
T ss_pred HHhhhH-hhhhhhcCHH---HHHhhcCcccchhcCCCCchhhcccccCCCcccCCC---Cce----eccCCCcHHhccce
Confidence 996533 5678999975 455554 6899999876531 111111211 222 23477889999887
Q ss_pred EEEEE
Q 008588 533 RWILR 537 (560)
Q Consensus 533 K~v~~ 537 (560)
-++..
T Consensus 390 ~s~~~ 394 (434)
T 1kae_A 390 MTVQE 394 (434)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 66543
No 98
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=37.91 E-value=68 Score=23.49 Aligned_cols=36 Identities=6% Similarity=0.115 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHH
Q 008588 144 AARESSRRLQALQSQDRRKILLDVADALEANESLIK 179 (560)
Q Consensus 144 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~ 179 (560)
.++..-..|+.+|.++|..+.......-+++..++.
T Consensus 29 i~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 64 (67)
T 3fgh_A 29 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK 64 (67)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667789999999999998777666665555543
No 99
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=37.76 E-value=55 Score=29.04 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=34.4
Q ss_pred EEeecCCccccCCC-C-CCCCceeeeeehhchHHHHhcCCCCccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhh
Q 008588 38 VLLSDVEGLYSGPP-S-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKV 115 (560)
Q Consensus 38 i~ltdVdGvy~~dP-~-~p~a~~i~~i~~~~~~~~~~~~~~~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~ 115 (560)
++++|+||..++.- . .++.+.+..++..+. .+...+.+.|+++.|++|+ ......
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~---------------------~~L~~Lk~~Gi~~~I~Tg~--~~~~~~ 67 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDA---------------------IGISLLKKSGIEVRLISER--ACSKQT 67 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHH---------------------HHHHHHHHTTCEEEEECSS--CCCHHH
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcH---------------------HHHHHHHHCCCEEEEEeCc--HHHHHH
Confidence 56789999998743 1 344444444432111 2445566689999999988 444444
Q ss_pred hc
Q 008588 116 LE 117 (560)
Q Consensus 116 ~~ 117 (560)
+.
T Consensus 68 l~ 69 (168)
T 3ewi_A 68 LS 69 (168)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 100
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=36.30 E-value=69 Score=25.83 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=39.5
Q ss_pred ccccceEEEeCccCC----cchHHHHHHHHHhcCCeEe--cCccccccccCCCCCcccccccCceEEEEEeCCHHHHHHH
Q 008588 386 CNAMETLLVHKDLAC----NGALNELVVELQHEGVGLF--GGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDH 459 (560)
Q Consensus 386 C~a~~rv~V~~~i~d----d~f~~~l~~~~~~~~~~~~--g~~~~~~~~pv~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 459 (560)
|+..-+++++-++.| +++.+.....+++.|.+++ |+.. .+...+. .|-+.|+.|.|.+.|.+.
T Consensus 2 ~M~~~Y~I~~~~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~----------~~~eG~~-~~~~viieFpS~~aa~~~ 70 (99)
T 2fiu_A 2 HMAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSV----------TELEGTA-RARNVVIEFPSVQHAIDC 70 (99)
T ss_dssp -CCCEEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEESCCE----------EEEESCC-CSEEEEEEESSHHHHHHH
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCc----------eEEecCC-cCeEEEEECCCHHHHHHH
Confidence 344445566555553 3444555555666665543 2211 1111111 347889999999999999
Q ss_pred HHhcCC
Q 008588 460 IHQHGS 465 (560)
Q Consensus 460 aN~~~~ 465 (560)
.|+-+|
T Consensus 71 ~~s~~Y 76 (99)
T 2fiu_A 71 YNSPEY 76 (99)
T ss_dssp HHSHHH
T ss_pred HcCHHH
Confidence 998665
No 101
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=30.44 E-value=62 Score=28.52 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=34.6
Q ss_pred EEeecCCccccCCC--CCCCCceeeeeehhchHHHHhcCCCCccccCChHHHHHHHHHHHHCCCcEEEEeCCCCchhhhh
Q 008588 38 VLLSDVEGLYSGPP--SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKV 115 (560)
Q Consensus 38 i~ltdVdGvy~~dP--~~p~a~~i~~i~~~~~~~~~~~~~~~~~~tggM~~K~~aa~~~~~~gi~v~I~~g~~~~~i~~~ 115 (560)
++++|+||...++- -.++.+.+..+..... ++...+.+.|++++|++|+....+...
T Consensus 10 ~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~---------------------~~l~~L~~~G~~~~i~Tg~~~~~~~~~ 68 (180)
T 1k1e_A 10 FVITDVDGVLTDGQLHYDANGEAIKSFHVRDG---------------------LGIKMLMDADIQVAVLSGRDSPILRRR 68 (180)
T ss_dssp EEEEECTTTTSCSEEEEETTEEEEEEEEHHHH---------------------HHHHHHHHTTCEEEEEESCCCHHHHHH
T ss_pred EEEEeCCCCcCCCCeeeccCcceeeeeccchH---------------------HHHHHHHHCCCeEEEEeCCCcHHHHHH
Confidence 45789999776521 1223444444433211 334445567999999998877666554
Q ss_pred hc
Q 008588 116 LE 117 (560)
Q Consensus 116 ~~ 117 (560)
+.
T Consensus 69 ~~ 70 (180)
T 1k1e_A 69 IA 70 (180)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 102
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.53 E-value=99 Score=23.91 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHH
Q 008588 143 VAARESSRRLQALQSQDRRKILLDVADALEANESLIK 179 (560)
Q Consensus 143 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~ 179 (560)
+.++..-..|+.++.++|..+.......-+++..++.
T Consensus 47 eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 83 (86)
T 2eqz_A 47 EFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK 83 (86)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666789999999999998777776666655543
No 103
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=28.75 E-value=68 Score=30.27 Aligned_cols=70 Identities=6% Similarity=0.093 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCeEEeeCCcchHHHHHHHHHHHHHhcccccCcCcEEeecCCchhhHhhcCCCCccEEEeecCHHHHHHH
Q 008588 263 VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQI 342 (560)
Q Consensus 263 ~~~~~~ALaaGNtvVlKPse~tp~t~~~l~~l~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i 342 (560)
+..++..+..||=||+|.+...-. ..+..++.. -||.|++++++..++- ...-+.+.+.++.+..+=..+
T Consensus 21 F~~l~~~vl~GnQiIVrg~~~~~~--~s~~~~L~~----lLP~~c~~l~~~s~~Y----~~~~~cnilgls~~v~iP~~v 90 (226)
T 3v42_A 21 FRMLAWHVLMGNQVIWKSRDVDLV--QSAFEVLRT----MLPVGCVRIIPYSSQY----EEAYRCNFLGLSPHVQIPPHV 90 (226)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHH--HHHHHHHGG----GSCGGGCCEEEEESSC----CCTTTCSEEEECTTCCCCHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHH--HHHHHHHHH----hCCHHHHhccccchhh----cchhheeeecCCCCcccCccc
Confidence 466788999999999999864332 233444432 3999999999732221 123357888888887666655
No 104
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=25.87 E-value=89 Score=26.60 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=18.2
Q ss_pred HHHHHHHCCCcEEEEeCCCCchhhhhhc
Q 008588 90 AAYCAACAGIPVVITSGFAMDSIIKVLE 117 (560)
Q Consensus 90 aa~~~~~~gi~v~I~~g~~~~~i~~~~~ 117 (560)
+...+.+.|++++|++++....+...+.
T Consensus 44 ~l~~l~~~g~~~~i~T~~~~~~~~~~l~ 71 (162)
T 2p9j_A 44 GIKLLQKMGITLAVISGRDSAPLITRLK 71 (162)
T ss_dssp HHHHHHTTTCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHH
Confidence 3344455789988888877665555443
No 105
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=25.28 E-value=1.1e+02 Score=22.75 Aligned_cols=31 Identities=3% Similarity=0.146 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHcH
Q 008588 145 ARESSRRLQALQSQDRRKILLDVADALEANE 175 (560)
Q Consensus 145 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~ 175 (560)
++..-..|+.+|.++|..+..+....-+++.
T Consensus 36 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 66 (76)
T 1hry_A 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAMHR 66 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 3455567999999999988766655544443
No 106
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=25.17 E-value=1.3e+02 Score=24.27 Aligned_cols=38 Identities=8% Similarity=0.048 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHH
Q 008588 143 VAARESSRRLQALQSQDRRKILLDVADALEANESLIKV 180 (560)
Q Consensus 143 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~ 180 (560)
+.++..-..|+.++.+++..+..+....-+++..++..
T Consensus 36 eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 73 (101)
T 1v63_A 36 ERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDL 73 (101)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778899999999999998888877777777664
No 107
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=23.27 E-value=1e+02 Score=23.34 Aligned_cols=31 Identities=6% Similarity=0.134 Sum_probs=22.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHcH
Q 008588 145 ARESSRRLQALQSQDRRKILLDVADALEANE 175 (560)
Q Consensus 145 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~ 175 (560)
++..-..|+.+|.++|..+.......-+++.
T Consensus 34 sk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~ 64 (80)
T 1gt0_D 34 SKRLGAEWKLLSETEKRPFIDEAKRLRALHM 64 (80)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999988776655544443
No 108
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=23.24 E-value=1.3e+02 Score=22.60 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcH
Q 008588 144 AARESSRRLQALQSQDRRKILLDVADALEANE 175 (560)
Q Consensus 144 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~ 175 (560)
.++..-..|+.++.++|..+.......-+++.
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 64 (79)
T 3u2b_C 33 ISKRLGKRWKLLKDSDKIPFIQEAERLRLKHM 64 (79)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 34556678999999999998876655544443
No 109
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=22.57 E-value=1.1e+02 Score=24.09 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHH
Q 008588 144 AARESSRRLQALQSQDRRKILLDVADALEANESLIK 179 (560)
Q Consensus 144 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~ 179 (560)
.++..-..|+.++.++|..+.......-+++..++.
T Consensus 38 isk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 73 (92)
T 2crj_A 38 ITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELW 73 (92)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556779999999999998887776666665554
No 110
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.04 E-value=1.5e+02 Score=24.10 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHHH
Q 008588 144 AARESSRRLQALQSQDRRKILLDVADALEANESLIKV 180 (560)
Q Consensus 144 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~ 180 (560)
.++..-..|+.++.+++..+.......-+++..++..
T Consensus 44 isk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 80 (108)
T 1v64_A 44 RMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLR 80 (108)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667899999999999998888877777777654
No 111
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.49 E-value=1.6e+02 Score=23.54 Aligned_cols=36 Identities=6% Similarity=0.020 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcHHHHH
Q 008588 144 AARESSRRLQALQSQDRRKILLDVADALEANESLIK 179 (560)
Q Consensus 144 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~ 179 (560)
.++..-..|+.++.++|..+.......-+++..++.
T Consensus 48 isk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 83 (102)
T 2co9_A 48 VSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLA 83 (102)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555679999999999998877776666665554
No 112
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=21.46 E-value=3.4e+02 Score=25.69 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=44.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCCC--------chhhhhhcCCceeeEEecCCCcccchhhHHHHHHHH-HHH-----HH---
Q 008588 88 VNAAYCAACAGIPVVITSGFAM--------DSIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAA-RES-----SR--- 150 (560)
Q Consensus 88 ~~aa~~~~~~gi~v~I~~g~~~--------~~i~~~~~G~~~GT~~~~~~~~~~~~~~v~~av~~A-~~A-----~~--- 150 (560)
+.+|..|.+.||.++.+.-... +.|.++.. ..-|+++... .+++.+.++.. +++ +.
T Consensus 28 ~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~-~tGG~yf~a~------~~~l~~~~~~~t~~~~~~t~q~~v~ 100 (242)
T 3rag_A 28 VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIAD-AGGGMCRIVQ------PADISATAQMMTHQTMQMTLQQVVN 100 (242)
T ss_dssp HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHH-HTTSCEEEEC------GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHH-hcCCeEEEee------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999877654222 34455443 1126777766 45555443222 222 11
Q ss_pred ---------HHhhCCHHHHHHHHHHHHHH
Q 008588 151 ---------RLQALQSQDRRKILLDVADA 170 (560)
Q Consensus 151 ---------~w~~~~~~~R~~~L~~~a~~ 170 (560)
....++++.|.++++-+.++
T Consensus 101 ~~~~~i~g~~~~~l~p~~r~~~~~~~~~l 129 (242)
T 3rag_A 101 QELLAVMGKSTEDLPPADRARVMQVVEKL 129 (242)
T ss_dssp HHHHHHSSCCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCCcchhcchhhhhhhh
Confidence 24567888888887655443
No 113
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=21.00 E-value=1.5e+02 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHc
Q 008588 144 AARESSRRLQALQSQDRRKILLDVADALEAN 174 (560)
Q Consensus 144 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~ 174 (560)
.++..-..|+.++.++|..+..+....-+++
T Consensus 48 isk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~ 78 (87)
T 2e6o_A 48 ISVILGDRWKKMKNEERRMYTLEAKALAEEQ 78 (87)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 3455566899999999998877665544444
No 114
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=20.66 E-value=1.1e+02 Score=22.42 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHc
Q 008588 144 AARESSRRLQALQSQDRRKILLDVADALEAN 174 (560)
Q Consensus 144 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~ 174 (560)
.++..-..|+.+|.++|..+.......-+++
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y 63 (71)
T 4a3n_A 33 LSKMLGKSWKALTLAEKRPFVEEAERLRVQH 63 (71)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3455567799999999998887665544444
No 115
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=20.65 E-value=1.5e+02 Score=22.43 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcH
Q 008588 144 AARESSRRLQALQSQDRRKILLDVADALEANE 175 (560)
Q Consensus 144 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~ 175 (560)
.++..-..|+.++.++|..+.......-+++.
T Consensus 37 isk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 68 (83)
T 3f27_D 37 LSKMLGKSWKALTLAEKRPFVEEAERLRVQHM 68 (83)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 34555678999999999998876655544443
Done!