Query 008589
Match_columns 560
No_of_seqs 130 out of 155
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 14:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 99.9 3.1E-23 6.7E-28 231.6 18.7 211 80-294 505-731 (913)
2 KOG0964 Structural maintenance 95.8 5.9 0.00013 47.7 26.5 39 250-294 389-427 (1200)
3 PF00038 Filament: Intermediat 95.7 2.9 6.2E-05 42.4 27.3 83 25-124 12-95 (312)
4 KOG0612 Rho-associated, coiled 95.6 5.5 0.00012 48.8 25.8 112 182-295 649-787 (1317)
5 KOG1029 Endocytic adaptor prot 95.5 3.8 8.2E-05 48.3 23.6 63 106-168 319-381 (1118)
6 PRK03918 chromosome segregatio 95.5 6.2 0.00013 45.4 28.3 40 268-307 388-429 (880)
7 TIGR00606 rad50 rad50. This fa 95.3 10 0.00022 46.6 30.0 154 20-205 788-959 (1311)
8 KOG0244 Kinesin-like protein [ 95.2 0.83 1.8E-05 54.0 17.5 66 92-157 455-522 (913)
9 PF09726 Macoilin: Transmembra 95.2 6.8 0.00015 45.6 24.6 35 169-203 541-575 (697)
10 KOG0161 Myosin class II heavy 95.0 7.4 0.00016 49.9 25.8 43 161-203 1043-1085(1930)
11 PF03638 TCR: Tesmin/TSO1-like 94.8 0.017 3.7E-07 44.6 1.8 37 345-384 4-40 (42)
12 KOG1029 Endocytic adaptor prot 94.7 6.4 0.00014 46.5 22.2 49 180-228 472-520 (1118)
13 KOG0996 Structural maintenance 94.7 15 0.00032 45.2 27.7 69 133-201 429-507 (1293)
14 PF12128 DUF3584: Protein of u 94.6 15 0.00032 45.0 29.4 55 250-304 476-532 (1201)
15 PF07888 CALCOCO1: Calcium bin 94.6 11 0.00023 43.0 25.2 36 92-127 144-180 (546)
16 KOG0994 Extracellular matrix g 94.5 13 0.00028 45.8 24.5 99 186-306 1653-1751(1758)
17 TIGR00606 rad50 rad50. This fa 94.0 20 0.00044 44.1 28.6 22 108-129 796-817 (1311)
18 KOG4674 Uncharacterized conser 93.9 12 0.00026 47.7 23.9 237 24-298 798-1073(1822)
19 PF05033 Pre-SET: Pre-SET moti 93.8 0.04 8.6E-07 47.4 2.1 37 344-383 46-103 (103)
20 COG1196 Smc Chromosome segrega 93.7 21 0.00046 43.4 31.1 19 26-44 167-185 (1163)
21 PF10481 CENP-F_N: Cenp-F N-te 93.7 2.6 5.6E-05 44.3 15.2 105 178-297 23-128 (307)
22 TIGR02169 SMC_prok_A chromosom 93.6 19 0.0004 42.3 27.1 11 415-425 558-568 (1164)
23 TIGR02168 SMC_prok_B chromosom 93.6 18 0.00039 42.1 27.6 13 29-41 170-182 (1179)
24 KOG0161 Myosin class II heavy 93.4 23 0.00049 45.8 25.2 147 80-226 925-1087(1930)
25 KOG0250 DNA repair protein RAD 93.3 25 0.00054 42.9 26.7 60 140-199 277-342 (1074)
26 TIGR02169 SMC_prok_A chromosom 93.2 22 0.00047 41.7 26.4 13 112-124 192-204 (1164)
27 PF05010 TACC: Transforming ac 92.9 11 0.00024 37.8 18.0 123 92-221 70-195 (207)
28 PF10174 Cast: RIM-binding pro 92.6 27 0.00059 41.4 28.3 187 112-311 302-507 (775)
29 COG1196 Smc Chromosome segrega 92.1 36 0.00077 41.6 29.2 47 252-298 858-904 (1163)
30 PLN03229 acetyl-coenzyme A car 91.7 27 0.00058 41.3 21.3 63 249-311 651-726 (762)
31 KOG0933 Structural maintenance 91.7 39 0.00085 41.3 23.6 43 170-219 777-819 (1174)
32 KOG0979 Structural maintenance 91.3 43 0.00092 40.9 25.0 29 134-162 703-731 (1072)
33 KOG4807 F-actin binding protei 90.6 33 0.00071 38.3 21.9 31 258-297 508-538 (593)
34 PF12128 DUF3584: Protein of u 90.2 54 0.0012 40.3 30.6 25 22-46 509-533 (1201)
35 PRK02224 chromosome segregatio 89.4 48 0.001 38.6 24.7 53 135-188 312-364 (880)
36 KOG0977 Nuclear envelope prote 89.3 46 0.00099 38.2 24.7 61 158-218 200-281 (546)
37 KOG0971 Microtubule-associated 89.3 61 0.0013 39.5 21.5 62 164-229 380-441 (1243)
38 PF04065 Not3: Not1 N-terminal 89.2 29 0.00062 35.6 18.0 72 103-177 4-96 (233)
39 PF15070 GOLGA2L5: Putative go 89.2 49 0.0011 38.3 27.8 19 28-46 47-65 (617)
40 PF07888 CALCOCO1: Calcium bin 88.8 49 0.0011 37.9 24.7 56 254-309 399-457 (546)
41 PRK04778 septation ring format 88.1 51 0.0011 37.2 23.0 8 192-199 329-336 (569)
42 KOG0995 Centromere-associated 87.8 58 0.0013 37.5 22.9 90 138-227 288-393 (581)
43 PF00038 Filament: Intermediat 87.6 35 0.00075 34.7 23.2 39 254-292 265-304 (312)
44 KOG0996 Structural maintenance 87.4 86 0.0019 39.1 24.7 21 28-48 264-284 (1293)
45 PF05266 DUF724: Protein of un 84.8 25 0.00053 34.9 13.3 55 149-204 129-183 (190)
46 PF14988 DUF4515: Domain of un 84.4 47 0.001 33.2 18.2 75 140-214 43-123 (206)
47 KOG0971 Microtubule-associated 84.2 1.1E+02 0.0024 37.4 23.8 73 109-185 229-309 (1243)
48 KOG0964 Structural maintenance 84.2 1.2E+02 0.0025 37.5 21.7 176 108-295 188-373 (1200)
49 PF00769 ERM: Ezrin/radixin/mo 83.9 46 0.001 33.9 15.2 21 108-128 2-22 (246)
50 KOG0982 Centrosomal protein Nu 83.5 84 0.0018 35.4 22.5 123 109-232 220-356 (502)
51 PRK11637 AmiB activator; Provi 82.2 79 0.0017 34.2 25.3 13 440-452 389-401 (428)
52 KOG0250 DNA repair protein RAD 82.0 1.4E+02 0.003 36.9 25.2 129 92-224 236-381 (1074)
53 KOG0933 Structural maintenance 81.6 1.4E+02 0.0031 36.8 25.8 26 266-291 908-933 (1174)
54 PF11559 ADIP: Afadin- and alp 81.5 45 0.00098 30.9 15.3 20 182-201 128-147 (151)
55 KOG4657 Uncharacterized conser 81.2 63 0.0014 33.6 14.7 56 163-219 90-147 (246)
56 PRK02224 chromosome segregatio 79.9 1.3E+02 0.0028 35.2 27.6 7 32-38 188-194 (880)
57 KOG0963 Transcription factor/C 79.5 1.3E+02 0.0029 35.1 25.4 52 257-308 289-342 (629)
58 PF05667 DUF812: Protein of un 79.4 1.3E+02 0.0028 34.9 22.5 22 140-161 404-425 (594)
59 PF09730 BicD: Microtubule-ass 78.6 9.4 0.0002 44.7 9.1 58 253-311 255-321 (717)
60 PF10212 TTKRSYEDQ: Predicted 77.9 1.4E+02 0.0029 34.3 18.4 126 92-224 317-503 (518)
61 COG2433 Uncharacterized conser 75.8 80 0.0017 36.8 15.1 134 139-292 354-509 (652)
62 PF14988 DUF4515: Domain of un 75.8 91 0.002 31.3 25.3 80 103-182 39-123 (206)
63 KOG0243 Kinesin-like protein [ 73.8 1.8E+02 0.0038 36.0 17.8 22 24-45 404-425 (1041)
64 PF04912 Dynamitin: Dynamitin 73.5 1.4E+02 0.003 32.2 17.7 104 112-215 262-378 (388)
65 PHA02562 46 endonuclease subun 72.8 1.5E+02 0.0033 32.4 21.4 215 24-297 174-398 (562)
66 PF00769 ERM: Ezrin/radixin/mo 69.8 1.2E+02 0.0025 31.1 13.4 15 283-297 187-201 (246)
67 PF10146 zf-C4H2: Zinc finger- 69.5 1.4E+02 0.003 30.6 15.1 79 142-220 13-93 (230)
68 PF05667 DUF812: Protein of un 68.9 2.3E+02 0.005 32.9 25.4 42 254-295 488-529 (594)
69 COG3883 Uncharacterized protei 68.8 1.6E+02 0.0035 31.1 14.8 62 159-220 148-210 (265)
70 PF15254 CCDC14: Coiled-coil d 68.6 2.7E+02 0.0059 33.6 18.4 79 109-187 392-490 (861)
71 PF09755 DUF2046: Uncharacteri 67.8 1.8E+02 0.004 31.3 26.1 23 208-230 181-203 (310)
72 COG1579 Zn-ribbon protein, pos 67.6 1.6E+02 0.0035 30.6 19.6 122 141-297 14-136 (239)
73 PF05010 TACC: Transforming ac 67.0 1.5E+02 0.0032 30.0 18.3 21 159-179 122-142 (207)
74 PRK04863 mukB cell division pr 67.0 3.7E+02 0.008 34.6 22.4 14 29-42 146-159 (1486)
75 PRK11637 AmiB activator; Provi 64.8 2.1E+02 0.0046 31.0 25.2 21 272-292 234-254 (428)
76 KOG4673 Transcription factor T 64.7 3.1E+02 0.0068 33.0 23.5 49 249-297 603-656 (961)
77 COG4942 Membrane-bound metallo 64.7 2.4E+02 0.0052 31.6 23.5 19 141-159 91-109 (420)
78 PRK12704 phosphodiesterase; Pr 64.6 1.8E+02 0.004 32.9 14.8 35 195-229 111-145 (520)
79 PF08614 ATG16: Autophagy prot 64.5 51 0.0011 32.0 9.3 63 108-170 120-191 (194)
80 KOG1899 LAR transmembrane tyro 64.2 1.1E+02 0.0023 36.2 12.9 71 135-205 193-263 (861)
81 PF04111 APG6: Autophagy prote 64.0 1.4E+02 0.003 31.6 13.0 13 112-124 58-70 (314)
82 PF09726 Macoilin: Transmembra 63.3 3.1E+02 0.0068 32.4 22.2 15 299-313 645-659 (697)
83 PF08581 Tup_N: Tup N-terminal 62.5 50 0.0011 28.7 7.9 35 112-154 40-74 (79)
84 PF13904 DUF4207: Domain of un 61.7 2E+02 0.0043 29.7 15.7 12 169-180 184-195 (264)
85 PF12761 End3: Actin cytoskele 61.3 1.1E+02 0.0023 31.1 11.0 49 108-156 100-151 (195)
86 KOG0018 Structural maintenance 60.6 4.3E+02 0.0093 33.1 21.8 66 86-153 243-312 (1141)
87 PF15397 DUF4618: Domain of un 60.2 2.3E+02 0.0049 29.8 14.5 139 28-202 60-222 (258)
88 KOG4674 Uncharacterized conser 59.7 5.4E+02 0.012 34.0 25.8 128 135-263 1016-1165(1822)
89 KOG0977 Nuclear envelope prote 59.4 3.3E+02 0.0073 31.5 21.5 25 502-527 478-502 (546)
90 COG0419 SbcC ATPase involved i 58.8 3.8E+02 0.0083 32.0 27.1 21 109-129 230-250 (908)
91 PRK12704 phosphodiesterase; Pr 58.7 3.2E+02 0.0069 31.1 22.5 41 192-232 101-141 (520)
92 PF07926 TPR_MLP1_2: TPR/MLP1/ 58.4 1.5E+02 0.0033 27.2 16.5 50 158-214 58-107 (132)
93 KOG0247 Kinesin-like protein [ 58.3 4E+02 0.0088 32.1 16.3 18 104-121 490-507 (809)
94 PF12785 VESA1_N: Variant eryt 56.8 8.7 0.00019 42.7 2.9 30 345-374 149-180 (462)
95 PRK11281 hypothetical protein; 55.4 5.2E+02 0.011 32.4 26.6 90 199-293 221-321 (1113)
96 PRK04778 septation ring format 55.3 3.6E+02 0.0078 30.6 28.5 22 81-102 246-267 (569)
97 KOG0577 Serine/threonine prote 54.3 4.6E+02 0.01 31.5 24.3 69 162-230 552-638 (948)
98 KOG1265 Phospholipase C [Lipid 53.9 5.3E+02 0.011 32.1 23.3 75 158-232 1065-1148(1189)
99 PF12325 TMF_TATA_bd: TATA ele 52.8 78 0.0017 29.5 7.9 98 17-149 9-119 (120)
100 TIGR03185 DNA_S_dndD DNA sulfu 51.9 4.2E+02 0.0092 30.4 26.9 48 108-156 234-281 (650)
101 PF05557 MAD: Mitotic checkpoi 51.1 5 0.00011 46.1 0.0 43 182-224 259-307 (722)
102 KOG4848 Extracellular matrix-a 49.9 3.1E+02 0.0067 28.2 13.2 96 92-192 100-205 (225)
103 TIGR03319 YmdA_YtgF conserved 49.0 4.5E+02 0.0098 29.9 22.9 35 194-228 97-131 (514)
104 PF10146 zf-C4H2: Zinc finger- 48.9 96 0.0021 31.7 8.6 35 264-298 32-66 (230)
105 KOG0962 DNA repair protein RAD 48.8 6.9E+02 0.015 32.0 23.6 49 158-206 818-866 (1294)
106 smart00570 AWS associated with 48.1 8 0.00017 31.2 0.7 39 345-385 4-46 (51)
107 PF15619 Lebercilin: Ciliary p 48.1 3E+02 0.0064 27.5 18.7 50 180-229 33-82 (194)
108 KOG0994 Extracellular matrix g 47.0 6.5E+02 0.014 32.3 15.9 34 196-229 1712-1745(1758)
109 PF10174 Cast: RIM-binding pro 46.7 6E+02 0.013 30.7 21.4 32 170-201 545-576 (775)
110 KOG0018 Structural maintenance 46.6 6.6E+02 0.014 31.6 16.0 120 100-219 770-895 (1141)
111 PF13851 GAS: Growth-arrest sp 44.7 3.3E+02 0.0072 27.1 21.0 74 140-227 5-81 (201)
112 PF14992 TMCO5: TMCO5 family 44.6 2.4E+02 0.0052 30.1 10.9 16 28-43 22-37 (280)
113 PF09755 DUF2046: Uncharacteri 44.6 4.4E+02 0.0096 28.5 21.6 19 28-46 45-63 (310)
114 KOG3859 Septins (P-loop GTPase 44.4 4.4E+02 0.0095 28.9 12.8 49 97-153 286-335 (406)
115 KOG0809 SNARE protein TLG2/Syn 44.4 3.6E+02 0.0079 29.1 12.2 38 175-212 213-250 (305)
116 KOG1103 Predicted coiled-coil 44.3 5E+02 0.011 29.1 22.4 138 153-303 144-286 (561)
117 KOG3813 Uncharacterized conser 44.2 8 0.00017 43.9 0.2 44 340-385 303-351 (640)
118 KOG0976 Rho/Rac1-interacting s 44.1 7.1E+02 0.015 30.8 23.0 15 113-127 261-275 (1265)
119 PF10211 Ax_dynein_light: Axon 44.1 3.3E+02 0.0071 26.9 12.5 19 139-157 122-140 (189)
120 PF05622 HOOK: HOOK protein; 43.8 11 0.00024 43.4 1.2 23 207-229 317-339 (713)
121 KOG1082 Histone H3 (Lys9) meth 43.7 16 0.00035 38.8 2.4 20 365-385 151-170 (364)
122 PRK01156 chromosome segregatio 43.4 6.2E+02 0.014 29.9 27.0 31 265-295 689-719 (895)
123 PRK13729 conjugal transfer pil 43.4 1.1E+02 0.0023 34.8 8.5 43 113-160 78-120 (475)
124 TIGR01069 mutS2 MutS2 family p 43.2 5.5E+02 0.012 30.6 14.7 37 89-126 494-530 (771)
125 PF09731 Mitofilin: Mitochondr 43.1 5.3E+02 0.011 29.0 25.5 200 3-292 236-441 (582)
126 PF11068 YlqD: YlqD protein; 42.8 2.8E+02 0.006 26.3 10.0 19 141-159 24-42 (131)
127 PF13870 DUF4201: Domain of un 42.2 3.1E+02 0.0068 26.1 14.6 74 111-185 20-103 (177)
128 PRK09841 cryptic autophosphory 42.0 6.3E+02 0.014 29.6 15.3 25 106-130 269-293 (726)
129 PF07106 TBPIP: Tat binding pr 41.9 3.1E+02 0.0067 26.0 11.6 49 109-157 84-136 (169)
130 PRK04863 mukB cell division pr 41.0 9.3E+02 0.02 31.2 25.6 9 250-258 438-446 (1486)
131 PF04111 APG6: Autophagy prote 40.9 4.7E+02 0.01 27.8 13.9 15 112-126 10-24 (314)
132 PF07246 Phlebovirus_NSM: Phle 40.7 3E+02 0.0065 29.2 10.8 100 108-215 145-244 (264)
133 PF07111 HCR: Alpha helical co 39.8 7.5E+02 0.016 29.8 17.0 33 265-297 170-202 (739)
134 PF08172 CASP_C: CASP C termin 38.3 4.2E+02 0.0092 27.4 11.4 47 159-205 79-125 (248)
135 PF03962 Mnd1: Mnd1 family; I 37.8 2.2E+02 0.0048 28.1 9.0 19 109-127 74-92 (188)
136 PF05957 DUF883: Bacterial pro 36.8 2.8E+02 0.006 23.9 8.9 64 108-171 2-65 (94)
137 PLN03229 acetyl-coenzyme A car 36.7 8.5E+02 0.018 29.5 16.3 70 208-279 656-727 (762)
138 TIGR03007 pepcterm_ChnLen poly 36.3 6E+02 0.013 27.7 18.6 55 105-159 162-219 (498)
139 KOG2129 Uncharacterized conser 36.3 7.1E+02 0.015 28.5 15.9 15 416-430 443-457 (552)
140 PF08912 Rho_Binding: Rho Bind 36.1 1.2E+02 0.0026 26.2 5.9 40 109-148 8-49 (69)
141 PRK01156 chromosome segregatio 36.0 8E+02 0.017 29.1 28.4 15 142-156 254-268 (895)
142 PF12709 Kinetocho_Slk19: Cent 35.4 3E+02 0.0065 24.8 8.5 52 106-157 3-62 (87)
143 PRK00409 recombination and DNA 35.1 8.6E+02 0.019 29.1 16.5 8 13-20 414-421 (782)
144 KOG0804 Cytoplasmic Zn-finger 35.0 7.5E+02 0.016 28.4 13.4 31 197-227 417-447 (493)
145 PF07926 TPR_MLP1_2: TPR/MLP1/ 35.0 3.6E+02 0.0079 24.8 18.5 39 252-290 93-131 (132)
146 PF10212 TTKRSYEDQ: Predicted 35.0 3.5E+02 0.0075 31.2 10.9 64 92-163 442-506 (518)
147 KOG1937 Uncharacterized conser 34.5 7.7E+02 0.017 28.4 25.7 31 11-41 151-181 (521)
148 PF01576 Myosin_tail_1: Myosin 33.9 14 0.0003 43.9 0.0 101 82-188 9-110 (859)
149 PF04880 NUDE_C: NUDE protein, 33.8 68 0.0015 31.6 4.7 22 266-287 2-23 (166)
150 PRK12705 hypothetical protein; 33.4 7.9E+02 0.017 28.2 14.0 99 110-212 36-134 (508)
151 KOG0995 Centromere-associated 32.8 8.7E+02 0.019 28.5 18.2 137 83-219 420-567 (581)
152 cd07685 F-BAR_Fes The F-BAR (F 32.7 2.6E+02 0.0057 29.2 8.8 120 23-153 21-151 (237)
153 KOG4593 Mitotic checkpoint pro 32.2 9.7E+02 0.021 28.9 29.1 135 92-232 79-224 (716)
154 PF04156 IncA: IncA protein; 32.1 4.5E+02 0.0098 25.0 15.1 17 111-127 95-111 (191)
155 TIGR02894 DNA_bind_RsfA transc 32.0 3.4E+02 0.0074 26.9 9.0 96 206-313 51-148 (161)
156 COG1382 GimC Prefoldin, chaper 31.8 4.5E+02 0.0097 24.8 9.8 21 26-46 22-42 (119)
157 KOG2751 Beclin-like protein [S 31.6 4.2E+02 0.009 30.1 10.6 30 97-126 129-158 (447)
158 KOG0612 Rho-associated, coiled 31.5 1.2E+03 0.027 29.9 21.4 14 250-263 759-772 (1317)
159 COG1579 Zn-ribbon protein, pos 31.4 6.2E+02 0.013 26.4 18.9 24 171-194 57-80 (239)
160 KOG2129 Uncharacterized conser 31.4 8.5E+02 0.018 27.9 22.4 47 252-298 280-326 (552)
161 PF10805 DUF2730: Protein of u 31.2 2.2E+02 0.0048 25.6 7.2 48 109-156 40-91 (106)
162 PF11500 Cut12: Spindle pole b 31.0 2.4E+02 0.0052 27.6 7.8 20 158-177 108-127 (152)
163 TIGR03545 conserved hypothetic 31.0 3.5E+02 0.0077 31.1 10.3 8 221-228 264-271 (555)
164 PF04156 IncA: IncA protein; 30.8 4.7E+02 0.01 24.8 13.6 7 117-123 87-93 (191)
165 KOG2391 Vacuolar sorting prote 30.7 3.4E+02 0.0075 29.9 9.6 59 158-216 217-278 (365)
166 PF02841 GBP_C: Guanylate-bind 30.7 6.2E+02 0.014 26.2 11.7 12 158-169 246-257 (297)
167 cd07649 F-BAR_GAS7 The F-BAR ( 30.1 6.1E+02 0.013 25.8 11.1 23 25-47 23-46 (233)
168 KOG0804 Cytoplasmic Zn-finger 29.7 9.1E+02 0.02 27.8 15.3 71 131-202 369-443 (493)
169 PF02841 GBP_C: Guanylate-bind 29.6 6.5E+02 0.014 26.0 12.0 18 109-126 188-205 (297)
170 PRK06975 bifunctional uroporph 29.4 9.7E+02 0.021 28.0 16.1 57 254-310 417-502 (656)
171 PRK10884 SH3 domain-containing 29.2 6.1E+02 0.013 25.6 11.1 11 114-124 96-106 (206)
172 KOG1171 Metallothionein-like p 29.1 21 0.00045 39.5 0.4 35 345-382 218-252 (406)
173 COG2433 Uncharacterized conser 29.1 8.8E+02 0.019 28.8 12.9 84 109-202 420-503 (652)
174 KOG4603 TBP-1 interacting prot 28.8 5.6E+02 0.012 26.0 10.0 46 109-154 128-173 (201)
175 PF14738 PaaSYMP: Solute carri 28.5 4E+02 0.0086 25.9 8.8 25 21-46 12-36 (154)
176 PF11932 DUF3450: Protein of u 27.9 6.4E+02 0.014 25.4 12.5 65 109-173 47-119 (251)
177 KOG0243 Kinesin-like protein [ 27.6 1.3E+03 0.029 29.0 22.9 34 196-229 523-556 (1041)
178 PF03037 KMP11: Kinetoplastid 27.6 4.4E+02 0.0095 23.4 8.6 63 108-174 11-76 (90)
179 KOG0979 Structural maintenance 27.4 1.3E+03 0.029 29.0 22.5 19 109-127 179-197 (1072)
180 PF07106 TBPIP: Tat binding pr 27.2 4.3E+02 0.0093 25.0 8.8 22 108-129 76-97 (169)
181 PRK00106 hypothetical protein; 27.1 1E+03 0.022 27.5 24.2 32 195-226 119-150 (535)
182 PF06548 Kinesin-related: Kine 27.1 1E+03 0.022 27.4 15.6 156 159-318 133-386 (488)
183 KOG3859 Septins (P-loop GTPase 26.8 7.5E+02 0.016 27.2 11.2 79 104-200 319-397 (406)
184 PF10481 CENP-F_N: Cenp-F N-te 26.1 8.7E+02 0.019 26.3 15.9 81 206-294 103-192 (307)
185 PTZ00266 NIMA-related protein 26.0 1.2E+03 0.026 29.2 14.0 11 362-372 730-740 (1021)
186 KOG0978 E3 ubiquitin ligase in 25.9 1.2E+03 0.026 28.0 26.5 241 26-303 267-516 (698)
187 KOG3433 Protein involved in me 25.9 3.9E+02 0.0084 27.3 8.4 65 108-178 85-149 (203)
188 PF07352 Phage_Mu_Gam: Bacteri 25.9 2.3E+02 0.005 26.5 6.6 47 111-161 10-56 (149)
189 PF14282 FlxA: FlxA-like prote 25.9 3.8E+02 0.0082 24.1 7.7 18 144-161 51-68 (106)
190 KOG3990 Uncharacterized conser 25.8 4E+02 0.0087 28.5 8.8 24 101-124 222-245 (305)
191 TIGR00570 cdk7 CDK-activating 25.6 8E+02 0.017 26.6 11.2 88 97-186 99-188 (309)
192 PF13815 Dzip-like_N: Iguana/D 25.4 3.3E+02 0.0071 24.7 7.3 27 100-126 68-95 (118)
193 PRK11519 tyrosine kinase; Prov 25.3 1.1E+03 0.025 27.5 16.5 25 106-130 269-293 (719)
194 PRK00106 hypothetical protein; 25.3 1.1E+03 0.024 27.3 18.7 43 190-232 121-163 (535)
195 KOG4715 SWI/SNF-related matrix 25.2 6.8E+02 0.015 27.7 10.6 85 57-156 177-272 (410)
196 PRK09039 hypothetical protein; 25.2 8.7E+02 0.019 26.1 23.3 25 105-129 40-64 (343)
197 KOG0288 WD40 repeat protein Ti 25.0 1.1E+03 0.023 27.0 15.1 55 145-200 49-103 (459)
198 TIGR01069 mutS2 MutS2 family p 24.8 1.2E+03 0.027 27.8 13.6 16 137-152 536-551 (771)
199 PF11559 ADIP: Afadin- and alp 24.8 5.6E+02 0.012 23.7 16.0 11 216-226 105-115 (151)
200 TIGR02894 DNA_bind_RsfA transc 24.7 7E+02 0.015 24.8 12.4 85 136-224 53-151 (161)
201 PF05701 WEMBL: Weak chloropla 24.6 1.1E+03 0.023 26.8 28.3 69 159-228 372-441 (522)
202 PF10376 Mei5: Double-strand r 24.5 7.4E+02 0.016 25.4 10.3 29 150-178 133-161 (221)
203 PRK14148 heat shock protein Gr 24.4 3.3E+02 0.0072 27.4 7.7 34 93-126 22-55 (195)
204 PRK10920 putative uroporphyrin 24.4 1E+03 0.022 26.5 16.1 36 275-310 176-217 (390)
205 KOG2122 Beta-catenin-binding p 24.1 7.2E+02 0.016 32.8 11.7 15 109-123 80-94 (2195)
206 KOG0976 Rho/Rac1-interacting s 24.0 1.5E+03 0.032 28.3 26.6 28 258-285 331-358 (1265)
207 KOG4302 Microtubule-associated 23.9 6.7E+02 0.014 29.9 11.0 30 156-185 287-316 (660)
208 PRK09174 F0F1 ATP synthase sub 23.7 7.4E+02 0.016 24.8 10.5 78 109-190 78-166 (204)
209 PF05008 V-SNARE: Vesicle tran 23.7 4.2E+02 0.009 21.8 7.5 50 107-160 28-77 (79)
210 KOG4673 Transcription factor T 23.6 1.4E+03 0.03 27.9 26.2 85 131-215 396-516 (961)
211 PF12669 P12: Virus attachment 23.4 55 0.0012 26.8 1.8 11 345-355 29-39 (58)
212 PRK10780 periplasmic chaperone 23.2 6.3E+02 0.014 23.9 9.1 67 105-171 44-128 (165)
213 PRK06568 F0F1 ATP synthase sub 23.0 7E+02 0.015 24.2 14.2 75 133-211 52-126 (154)
214 PF12711 Kinesin-relat_1: Kine 22.9 5.4E+02 0.012 23.1 7.9 37 147-183 27-75 (86)
215 PRK10884 SH3 domain-containing 22.9 8E+02 0.017 24.8 11.6 20 105-124 94-113 (206)
216 PF04420 CHD5: CHD5-like prote 22.4 4.3E+02 0.0093 25.3 7.9 48 109-157 38-86 (161)
217 KOG0993 Rab5 GTPase effector R 22.3 9.3E+02 0.02 27.6 11.1 41 160-200 142-182 (542)
218 KOG4364 Chromatin assembly fac 22.1 1.4E+03 0.03 27.7 12.9 91 136-226 260-350 (811)
219 TIGR02231 conserved hypothetic 22.0 1.1E+03 0.024 26.2 13.7 21 181-201 72-92 (525)
220 PRK09039 hypothetical protein; 22.0 1E+03 0.022 25.6 16.4 17 143-159 45-61 (343)
221 cd07651 F-BAR_PombeCdc15_like 21.9 7.9E+02 0.017 24.4 10.8 26 23-48 21-47 (236)
222 PF02067 Metallothio_5: Metall 21.6 45 0.00097 26.2 0.9 16 359-376 9-24 (41)
223 PF10458 Val_tRNA-synt_C: Valy 21.6 3.1E+02 0.0067 22.5 5.8 50 108-157 8-59 (66)
224 KOG0163 Myosin class VI heavy 21.6 1.6E+03 0.035 27.9 19.7 15 205-219 957-971 (1259)
225 PRK11546 zraP zinc resistance 21.1 7E+02 0.015 24.2 8.9 62 103-165 53-117 (143)
226 KOG0963 Transcription factor/C 21.0 1.4E+03 0.031 27.1 19.2 54 178-231 290-343 (629)
227 cd07675 F-BAR_FNBP1L The F-BAR 20.7 9.8E+02 0.021 25.0 17.8 89 135-232 129-219 (252)
228 PF13864 Enkurin: Calmodulin-b 20.6 4.8E+02 0.01 22.9 7.2 46 111-156 44-93 (98)
229 PF11068 YlqD: YlqD protein; 20.4 5.5E+02 0.012 24.3 7.9 52 106-157 22-80 (131)
230 PF02183 HALZ: Homeobox associ 20.3 4.3E+02 0.0093 20.8 6.0 30 265-294 13-42 (45)
231 PRK15396 murein lipoprotein; P 20.2 4.3E+02 0.0093 23.2 6.6 46 182-227 27-72 (78)
232 KOG1853 LIS1-interacting prote 20.1 1.1E+03 0.024 25.4 20.0 26 272-297 151-176 (333)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.90 E-value=3.1e-23 Score=231.56 Aligned_cols=211 Identities=31% Similarity=0.288 Sum_probs=178.1
Q ss_pred ccccccccCcchhhhHHHHHHhhhhhHH-----HHHHHHHHHHHHHHHHHHHh-----hhccccchHHHHHHHHHHHHHH
Q 008589 80 ADCDSKVEDISDEIEDEEKELEHSSLQE-----KLDRELKELDKKLEQKEAEM-----KRFTGADTSVLKQHYEKKVLEL 149 (560)
Q Consensus 80 s~~~~~~~~~~~Ei~~~eKE~eh~~lQ~-----k~~KeLeEL~kRLqelE~em-----k~~~q~kl~KlKe~~EkKLs~L 149 (560)
.+|+.....++.|+.+++.|.+...-+. ..-+.-+++.++|+.+|.++ ++.++.++.+.++.++.....+
T Consensus 505 ~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl 584 (913)
T KOG0244|consen 505 EQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKL 584 (913)
T ss_pred HHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHH
Confidence 4566666666666666666665544333 25567788899999999996 4457788888999999999999
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 150 EQEK---KILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKE 226 (560)
Q Consensus 150 e~El---K~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe 226 (560)
.+|| |.++|+|+++|++++++||+|++.++||++||++++|+++|++.++++++.+|..||+|||+||++|+|||++
T Consensus 585 ~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~ 664 (913)
T KOG0244|consen 585 LQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKE 664 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 5566999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcc-cCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 227 LLESRKASSR-ETS--GSDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEES 294 (560)
Q Consensus 227 ~LekRKas~R-k~s--gs~~g~~~~a~~lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~ 294 (560)
++..|+.+.- ... .++ +...+...|+.+|++|++.+++.+++|+.++++|+.+..++..|+.+.
T Consensus 665 a~~~r~~~~s~~~~~~~~~----~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~ 731 (913)
T KOG0244|consen 665 ALCIRALTSSGQVTLGDNG----ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG 731 (913)
T ss_pred HHHHHhhcCCCccchhhcC----chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996621 111 111 334889999999999999999999999999999999999999888866
No 2
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.76 E-value=5.9 Score=47.70 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 250 KALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEES 294 (560)
Q Consensus 250 ~~lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~ 294 (560)
.....||..||+-+-+ .+....+.+.+|..++..++.++
T Consensus 389 ~eRDkwir~ei~~l~~------~i~~~ke~e~~lq~e~~~~e~~l 427 (1200)
T KOG0964|consen 389 EERDKWIRSEIEKLKR------GINDTKEQENILQKEIEDLESEL 427 (1200)
T ss_pred HHHHHHHHHHHHHHHH------HHhhhhhHHHHHHHHHHHHHHHH
Confidence 7788999999876532 23333344444444444444333
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.67 E-value=2.9 Score=42.43 Aligned_cols=83 Identities=24% Similarity=0.373 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCcchhhhHHHHHHhhhh
Q 008589 25 LLKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEEKELEHSS 104 (560)
Q Consensus 25 l~k~yv~kIqeLe~El~~~k~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~l~e~~s~~~~~~~~~~~Ei~~~eKE~eh~~ 104 (560)
=+-+||.|+..||.+=..|..--..-. .. + .+....+...|+....++-..|+.+..+..+..
T Consensus 12 Rla~YIekVr~LE~~N~~Le~~i~~~~-------~~----~------~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~ 74 (312)
T PF00038_consen 12 RLASYIEKVRFLEQENKRLESEIEELR-------EK----K------GEEVSRIKEMYEEELRELRRQIDDLSKEKARLE 74 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH-------hc----c------cccCcccccchhhHHHHhHHhhhhHHHHhhHHh
Confidence 366899999999988755543200000 00 0 011234456677777788888888888888866
Q ss_pred hH-HHHHHHHHHHHHHHHHHH
Q 008589 105 LQ-EKLDRELKELDKKLEQKE 124 (560)
Q Consensus 105 lQ-~k~~KeLeEL~kRLqelE 124 (560)
++ .++..++.+++.++...-
T Consensus 75 ~e~~~l~~e~~~~r~k~e~e~ 95 (312)
T PF00038_consen 75 LEIDNLKEELEDLRRKYEEEL 95 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 54 457778888888876653
No 4
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.57 E-value=5.5 Score=48.77 Aligned_cols=112 Identities=24% Similarity=0.301 Sum_probs=70.8
Q ss_pred HHHHhHHhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cccCC--CCCCchhhHHHHHHHHH
Q 008589 182 VLQLKKEGRRNEYEMHK--LLALNQRQKMVLQRKTEEASMATKRLKELLESRKAS-SRETS--GSDSNIIFYEKALMQAI 256 (560)
Q Consensus 182 IaQLKKe~RK~e~Ei~k--Lea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas-~Rk~s--gs~~g~~~~a~~lq~WL 256 (560)
+..|+++.+.......+ +++.+.++..+++-.++.+.+.++|+ -|+.+-+. ..-.+ ...+.....+..+-.|+
T Consensus 649 ~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i 726 (1317)
T KOG0612|consen 649 VEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEI 726 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34455555555555666 99999999999999999999999998 22222111 00000 12222333456788899
Q ss_pred HHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008589 257 EHELEVTV----------------------RVHEVRSEYERQMEERARMANEVARLKEESE 295 (560)
Q Consensus 257 ~~ELEv~v----------------------sv~Eae~~LErLmeeRa~La~EL~~Lk~e~e 295 (560)
+.|++.+- .+..++..||+.++.|-.+.++|.-..++++
T Consensus 727 ~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~ 787 (1317)
T KOG0612|consen 727 EAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVN 787 (1317)
T ss_pred HHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhc
Confidence 99998872 3456667777777777777777764444443
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=3.8 Score=48.29 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 106 QEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQES 168 (560)
Q Consensus 106 Q~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEES 168 (560)
++.|.|=..||.+|-+.||.|-..-....-.|-+++.++|-.+.+..-++.++.|.+++.-.-
T Consensus 319 keNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQR 381 (1118)
T KOG1029|consen 319 KENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQR 381 (1118)
T ss_pred HHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777666677776666655322222334555667777766666555666777776665443
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=95.54 E-value=6.2 Score=45.42 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHhh
Q 008589 268 EVRSEYERQMEERARMANEVARLKEESEQAN--LRRVKKRIS 307 (560)
Q Consensus 268 Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n--i~dlke~~s 307 (560)
++...++.+...+..+..++..|+.....+. |..|++.+.
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~ 429 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE 429 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554455555555555555544432 445544433
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.34 E-value=10 Score=46.60 Aligned_cols=154 Identities=14% Similarity=0.257 Sum_probs=78.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCcchhhhHHHHH
Q 008589 20 NQDVDLLKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEEKE 99 (560)
Q Consensus 20 ~q~~~l~k~yv~kIqeLe~El~~~k~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~l~e~~s~~~~~~~~~~~Ei~~~eKE 99 (560)
-+++..|..|...|..|+..|..+..-... ++ + +..+.++..+|..+.++
T Consensus 788 ~~~v~~i~r~~~ei~~l~~qie~l~~~l~~---------------~~-------------~--~~s~~ele~ei~~~~~e 837 (1311)
T TIGR00606 788 LTDVTIMERFQMELKDVERKIAQQAAKLQG---------------SD-------------L--DRTVQQVNQEKQEKQHE 837 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------cc-------------c--cCCHHHHHHHHHHHHHH
Confidence 467788888889999999888776554110 00 0 11333445566666666
Q ss_pred Hhhhh--------hHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Q 008589 100 LEHSS--------LQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQ----------VHLQ 161 (560)
Q Consensus 100 ~eh~~--------lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lq----------VqLm 161 (560)
++.+. ..+++.+++.+|..++-++..+.-... .-...+...+..|.+|..++..+. .-|.
T Consensus 838 l~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~--~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~ 915 (1311)
T TIGR00606 838 LDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG--TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE 915 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 65532 122233344444333333333311111 122244555555555555554443 2344
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHH
Q 008589 162 QKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQR 205 (560)
Q Consensus 162 kkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~k 205 (560)
..+......|...+...+.+..++..+-+.-...+..+...+..
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1311)
T TIGR00606 916 TFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKD 959 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555666666655555555555555444
No 8
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.23 E-value=0.83 Score=53.97 Aligned_cols=66 Identities=33% Similarity=0.417 Sum_probs=57.0
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--cccchHHHHHHHHHHHHHHHHHHHHHH
Q 008589 92 EIEDEEKELEHSSLQEKLDRELKELDKKLEQKEAEMKRF--TGADTSVLKQHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 92 Ei~~~eKE~eh~~lQ~k~~KeLeEL~kRLqelE~emk~~--~q~kl~KlKe~~EkKLs~Le~ElK~lq 157 (560)
.-..++..++|.+.|..|..+|.++.++|.++|..++.. ....+.+++++||.++..|+.|+..++
T Consensus 455 ~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le 522 (913)
T KOG0244|consen 455 AEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLE 522 (913)
T ss_pred hhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccc
Confidence 333558889999999999999999999999999988665 457799999999999999999986665
No 9
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.22 E-value=6.8 Score=45.56 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHH
Q 008589 169 EQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALN 203 (560)
Q Consensus 169 ekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~ 203 (560)
+.-|+-++.-|.|+-+|+.+-+-.+.++..|+...
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556666666666666666666666654
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.02 E-value=7.4 Score=49.86 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHH
Q 008589 161 QQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALN 203 (560)
Q Consensus 161 mkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~ 203 (560)
.+++.-+..-++.|-......+..|..+..+.+.++..|+...
T Consensus 1043 ~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~ 1085 (1930)
T KOG0161|consen 1043 KRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKL 1085 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444555555555555555544443
No 11
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=94.78 E-value=0.017 Score=44.63 Aligned_cols=37 Identities=41% Similarity=0.977 Sum_probs=32.0
Q ss_pred CccccCCCccccccccccccCCCCCCCCCCccCccccchh
Q 008589 345 LCCTCSKSSLCKTNKCQCRAAGGACKASCGCSSTKCSNRE 384 (560)
Q Consensus 345 ~cCsCsk~S~CKt~kC~cra~g~~Cg~sCgC~~~KCsNR~ 384 (560)
..|+|.| |-|-..+|+|-++|..|++.|.| .-|.|+.
T Consensus 4 ~gC~Ckk-s~Clk~YC~Cf~~g~~C~~~C~C--~~C~N~~ 40 (42)
T PF03638_consen 4 KGCNCKK-SKCLKLYCECFQAGRFCTPNCKC--QNCKNTE 40 (42)
T ss_pred CCCcccC-cChhhhhCHHHHCcCcCCCCccc--CCCCCcC
Confidence 5688854 67999999999999999999999 6688865
No 12
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=6.4 Score=46.55 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=32.2
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 180 KEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELL 228 (560)
Q Consensus 180 KEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~L 228 (560)
-+|.-+.+.--..-.+|..|++.-+-+.+-|.+-+-|-.-++-+||...
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 3555555555556667777777766666667777777777777776544
No 13
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.68 E-value=15 Score=45.16 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHH
Q 008589 133 ADTSVLKQHYEKKVLELEQEKKILQV----------HLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLA 201 (560)
Q Consensus 133 ~kl~KlKe~~EkKLs~Le~ElK~lqV----------qLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea 201 (560)
+++.++=+.+...+.+++.||..|.+ ..+-.++.+++..+......+++++.+.++.-....+++-.+.
T Consensus 429 ~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaes 507 (1293)
T KOG0996|consen 429 SELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAES 507 (1293)
T ss_pred HHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677778888888877752 3456677788888888888889998888887777777665444
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.64 E-value=15 Score=44.95 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHH
Q 008589 250 KALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQAN--LRRVKK 304 (560)
Q Consensus 250 ~~lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n--i~dlke 304 (560)
.++..+-..--.....+..++..+..+...|.....+|..++.++..+. |..|..
T Consensus 476 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 532 (1201)
T PF12128_consen 476 KRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQR 532 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333344456677778888888888888888887777666552 444444
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.59 E-value=11 Score=43.04 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=23.1
Q ss_pred hhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHh
Q 008589 92 EIEDEEKELEHSS-LQEKLDRELKELDKKLEQKEAEM 127 (560)
Q Consensus 92 Ei~~~eKE~eh~~-lQ~k~~KeLeEL~kRLqelE~em 127 (560)
.++...+|++.+. ....+.++...++.++..+++++
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666644 44557777777777777777665
No 16
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.48 E-value=13 Score=45.82 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=56.6
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 008589 186 KKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEVTVR 265 (560)
Q Consensus 186 KKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs~~g~~~~a~~lq~WL~~ELEv~vs 265 (560)
+.+...-+..+..|+...++-.+.|.+|++...+|+.|-+.+.+.-+ ..+-.--+.+..
T Consensus 1653 ~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~---------------------~Ll~~a~~kl~~ 1711 (1758)
T KOG0994|consen 1653 KEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAE---------------------KLLGQANEKLDR 1711 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 33333334444477777778888888888888888777766554322 122222244455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 008589 266 VHEVRSEYERQMEERARMANEVARLKEESEQANLRRVKKRI 306 (560)
Q Consensus 266 v~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~ni~dlke~~ 306 (560)
+.+++..|+.-.+.=...+.+|+.|+.+++-+ +++++++.
T Consensus 1712 l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v-l~~I~~rv 1751 (1758)
T KOG0994|consen 1712 LKDLELEYLRNEQALEDKAAELAGLEKRVESV-LDHINERV 1751 (1758)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH-HHHHhhhh
Confidence 56666666544444334666777776665544 45555543
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.02 E-value=20 Score=44.08 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008589 108 KLDRELKELDKKLEQKEAEMKR 129 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~ 129 (560)
.+.+++..+.++|.+++.++..
T Consensus 796 r~~~ei~~l~~qie~l~~~l~~ 817 (1311)
T TIGR00606 796 RFQMELKDVERKIAQQAAKLQG 817 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3467788888888888877643
No 18
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.92 E-value=12 Score=47.67 Aligned_cols=237 Identities=21% Similarity=0.286 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCcchhhhHHHHHHhhh
Q 008589 24 DLLKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEEKELEHS 103 (560)
Q Consensus 24 ~l~k~yv~kIqeLe~El~~~k~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~l~e~~s~~~~~~~~~~~Ei~~~eKE~eh~ 103 (560)
.....|=++|-+|+.+|..|+.--....++ ++++..+.+........-|+++.++....
T Consensus 798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~---------------------~r~l~~~~~~~l~~~~~~i~~~~~~~~~~ 856 (1822)
T KOG4674|consen 798 ATKDKCESRIKELERELQKLKKKLQEKSSD---------------------LRELTNSLEKQLENAQNLVDELESELKSL 856 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344568899999999999998773333333 33344333333333444454444444332
Q ss_pred h--------hHHHHHHHHHHHHHHHHHHHHHhhhccc----c-------chHHHHHHH---HHHHHHHHHHHHHHH----
Q 008589 104 S--------LQEKLDRELKELDKKLEQKEAEMKRFTG----A-------DTSVLKQHY---EKKVLELEQEKKILQ---- 157 (560)
Q Consensus 104 ~--------lQ~k~~KeLeEL~kRLqelE~emk~~~q----~-------kl~KlKe~~---EkKLs~Le~ElK~lq---- 157 (560)
+ -..++.-++.+|.++|+..+.+...... . .+++..++. ..+|..-..+|...+
T Consensus 857 ~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~ 936 (1822)
T KOG4674|consen 857 LTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYS 936 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2334566888888888888777533332 1 123333332 333344444444444
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHH------
Q 008589 158 --VHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTE--EA--SMATKRLK------ 225 (560)
Q Consensus 158 --VqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtE--EA--~AA~KRLK------ 225 (560)
-+-+.+|+.+...|+.-- +..|--+.++-.-.+-++..|+.....-..++..-+. |. ..+-+.+.
T Consensus 937 s~eqsl~~~ks~lde~~~~~---ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~ 1013 (1822)
T KOG4674|consen 937 SLEQSLESVKSELDETRLEL---EAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNEL 1013 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHH
Confidence 356777888877777432 2224444444444444444443333332222221111 10 11111111
Q ss_pred -HHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008589 226 -ELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQAN 298 (560)
Q Consensus 226 -e~LekRKas~Rk~sgs~~g~~~~a~~lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n 298 (560)
.++.....+ . .....++.-+..+.+. +..++..|++-|-.-+.+...|..|+++....+
T Consensus 1014 ~~~~~~~s~~-------~----~~~~~~k~dl~~~~~~---~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~ 1073 (1822)
T KOG4674|consen 1014 KSLLKAASQA-------N----EQIEDLQNDLKTETEQ---LRKAQSKYESELVQHADLTQKLIKLREEFAKCN 1073 (1822)
T ss_pred HHHHHHHHHH-------H----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 0 0113344444444444 477888999988888888888888888777665
No 19
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=93.75 E-value=0.04 Score=47.42 Aligned_cols=37 Identities=41% Similarity=1.097 Sum_probs=24.1
Q ss_pred CCccccCCCccc-cccccccccCCCC--------------------CCCCCCccCccccch
Q 008589 344 GLCCTCSKSSLC-KTNKCQCRAAGGA--------------------CKASCGCSSTKCSNR 383 (560)
Q Consensus 344 ~~cCsCsk~S~C-Kt~kC~cra~g~~--------------------Cg~sCgC~~~KCsNR 383 (560)
..+|+| ...| ...+|.|....+. |++.|+|.. .|.||
T Consensus 46 ~~~C~C--~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~-~C~NR 103 (103)
T PF05033_consen 46 LQGCDC--SGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSP-SCRNR 103 (103)
T ss_dssp TS------SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-T-TSTT-
T ss_pred CccCcc--CCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCC-CCCCC
Confidence 358899 4559 7899999988864 999999998 99998
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.73 E-value=21 Score=43.37 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 008589 26 LKNYVSKIQELEGELLRVK 44 (560)
Q Consensus 26 ~k~yv~kIqeLe~El~~~k 44 (560)
+..|..++++.+.+|....
T Consensus 167 v~~y~~r~~ea~~~L~~~~ 185 (1163)
T COG1196 167 VSKYKERKEEAERKLERTE 185 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5569999999999996443
No 21
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.68 E-value=2.6 Score=44.31 Aligned_cols=105 Identities=24% Similarity=0.323 Sum_probs=65.6
Q ss_pred hHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHH
Q 008589 178 REKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIE 257 (560)
Q Consensus 178 reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs~~g~~~~a~~lq~WL~ 257 (560)
-+..+-.|+|+...++++|..|+|..++|..-.--..-|.+++.|-...+++.. .+...-+.||.
T Consensus 23 lE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c---------------~~lek~rqKls 87 (307)
T PF10481_consen 23 LEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESC---------------ENLEKTRQKLS 87 (307)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH---------------HHHHHHHHHhh
Confidence 345577889999999999999999999985433322223333222122222211 12255668999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 258 HELEVT-VRVHEVRSEYERQMEERARMANEVARLKEESEQA 297 (560)
Q Consensus 258 ~ELEv~-vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~ 297 (560)
|||-+- ..+.=++..|...-..=..|..+|..++.++|..
T Consensus 88 hdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 88 HDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998775 3444455566655555556778888888888843
No 22
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.61 E-value=19 Score=42.27 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=6.0
Q ss_pred hHHHhhHHHHH
Q 008589 415 ALVTHGAMLLQ 425 (560)
Q Consensus 415 ~~~~~ga~Llq 425 (560)
..|..+...|.
T Consensus 558 ~~a~~~i~~l~ 568 (1164)
T TIGR02169 558 AVAKEAIELLK 568 (1164)
T ss_pred HHHHHHHHHHH
Confidence 45566655553
No 23
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.58 E-value=18 Score=42.07 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 008589 29 YVSKIQELEGELL 41 (560)
Q Consensus 29 yv~kIqeLe~El~ 41 (560)
|..++.+.+..|.
T Consensus 170 ~~~~~~~t~~nL~ 182 (1179)
T TIGR02168 170 YKERRKETERKLE 182 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.41 E-value=23 Score=45.81 Aligned_cols=147 Identities=20% Similarity=0.275 Sum_probs=77.5
Q ss_pred ccccccccCcchhhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHhhhc--cccchHHHHHHHHHHHHHHHHHHHHH
Q 008589 80 ADCDSKVEDISDEIEDEEKELEHSS-LQEKLDRELKELDKKLEQKEAEMKRF--TGADTSVLKQHYEKKVLELEQEKKIL 156 (560)
Q Consensus 80 s~~~~~~~~~~~Ei~~~eKE~eh~~-lQ~k~~KeLeEL~kRLqelE~emk~~--~q~kl~KlKe~~EkKLs~Le~ElK~l 156 (560)
...+........++.++.+.++..- ...++..+...+..+|+.++.+|... .-+++.+.|...|..+..+...+...
T Consensus 925 ~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~ 1004 (1930)
T KOG0161|consen 925 AELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAE 1004 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666655532 34566667777777777777776443 22456666666666666665555222
Q ss_pred H----------HHHH---HHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 157 Q----------VHLQ---QKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKR 223 (560)
Q Consensus 157 q----------VqLm---kkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KR 223 (560)
+ .+|- .-|...-++-+......+|..-.|.-+-.-.+..+.-+..+...-.+.|++|-.|...+.-+
T Consensus 1005 eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1005 EEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2222 22222233333333333444444444443334444445566666666677777776666555
Q ss_pred HHH
Q 008589 224 LKE 226 (560)
Q Consensus 224 LKe 226 (560)
+.+
T Consensus 1085 ~e~ 1087 (1930)
T KOG0161|consen 1085 LED 1087 (1930)
T ss_pred hhH
Confidence 544
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.34 E-value=25 Score=42.92 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHhHHHHHHHhHHhhhhHHHHHHH
Q 008589 140 QHYEKKVLELEQEKKILQV---HLQQKIKQESEQFRMWK---ASREKEVLQLKKEGRRNEYEMHKL 199 (560)
Q Consensus 140 e~~EkKLs~Le~ElK~lqV---qLmkkMKEESekFR~wk---~~reKEIaQLKKe~RK~e~Ei~kL 199 (560)
-++++.+.+++.+|+..++ .|..+|+....+-+... ...+..|.+++-+.-.+.-|+.-+
T Consensus 277 ~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~ 342 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEA 342 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3456777777777766653 36666666665555555 555666666666555555554443
No 26
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.18 E-value=22 Score=41.75 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 008589 112 ELKELDKKLEQKE 124 (560)
Q Consensus 112 eLeEL~kRLqelE 124 (560)
.+.+|..++..++
T Consensus 192 ~~~~L~~q~~~l~ 204 (1164)
T TIGR02169 192 IIDEKRQQLERLR 204 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 27
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.94 E-value=11 Score=37.85 Aligned_cols=123 Identities=21% Similarity=0.356 Sum_probs=87.3
Q ss_pred hhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHhhhc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 92 EIEDEEKELEHSS-LQEKLDRELKELDKKLEQKEAEMKRF--TGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQES 168 (560)
Q Consensus 92 Ei~~~eKE~eh~~-lQ~k~~KeLeEL~kRLqelE~emk~~--~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEES 168 (560)
+|..+.+|+++.. --..+++-...|-+|......-+..+ +.+.+++--++|..+|...++...+|+..-..+|..-.
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~AN 149 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKAN 149 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666533 22346666666666666555444333 33446677788999999999999999999999998888
Q ss_pred HHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 169 EQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMAT 221 (560)
Q Consensus 169 ekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~ 221 (560)
+....-+....-|++.|+..-||.+..+..|+.. |..|+.|..-+.
T Consensus 150 eei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~-------LeQK~kEn~ELt 195 (207)
T PF05010_consen 150 EEIAQVRSKHQAELLALQASLKKEEMKVQSLEES-------LEQKTKENEELT 195 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 8888888888899999999999998888888754 444455544433
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.58 E-value=27 Score=41.36 Aligned_cols=187 Identities=22% Similarity=0.282 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhhhccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHH
Q 008589 112 ELKELDKKLEQKEAEMKRFTGADTSVLKQHY---EKKVLELEQEKKILQVHLQQKIK------QESEQFRMWKASREKEV 182 (560)
Q Consensus 112 eLeEL~kRLqelE~emk~~~q~kl~KlKe~~---EkKLs~Le~ElK~lqVqLmkkMK------EESekFR~wk~~reKEI 182 (560)
++..+..+|+.++.+.... ...+-++|+.. +..-..|..++-.|+.+|=.+.. .....+...+..-.-||
T Consensus 302 E~~~~qt~l~~~~~~~~d~-r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDM-RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred HHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666554333 44566666553 55556778888888766543332 22233333333333344
Q ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHH
Q 008589 183 LQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEV 262 (560)
Q Consensus 183 aQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs~~g~~~~a~~lq~WL~~ELEv 262 (560)
.-|+..-++.+.+|..|+.....=..+|+.|-.....++-||.. +. . +.+... ....+-.|+..-=.+
T Consensus 381 ~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~----~~----d-~~~~~~---~~~~lEea~~eker~ 448 (775)
T PF10174_consen 381 EDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS----QA----D-SSNEDE---ALETLEEALREKERL 448 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cc----c-ccchHH---HHHHHHHHHHHHHHH
Confidence 44444444444444444443333333333333333332222211 00 0 011111 113333444322222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHhhhccC
Q 008589 263 TVRVHEVRSEYE-RQMEERARMANEVARLKEESEQA---------NLRRVKKRISKNGN 311 (560)
Q Consensus 263 ~vsv~Eae~~LE-rLmeeRa~La~EL~~Lk~e~e~~---------ni~dlke~~s~~~~ 311 (560)
+-.+.+++...+ ...++...+-.++..|+.+++-+ .+-++++.++.+.+
T Consensus 449 ~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s 507 (775)
T PF10174_consen 449 QERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLAS 507 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhh
Confidence 333333333333 22334444555555555555544 27777887777766
No 29
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.09 E-value=36 Score=41.57 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008589 252 LMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQAN 298 (560)
Q Consensus 252 lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n 298 (560)
+..+..+--+..-.+.++..++..+-..+..+..+|..+..++..+.
T Consensus 858 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445566666666666666666666666666665553
No 30
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=91.73 E-value=27 Score=41.28 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH-----hhhhhHHHHHHhhhccC
Q 008589 249 EKALMQAIEHELEVTVRVHEVRSEYERQMEERARMA--------NEVARLKEES-----EQANLRRVKKRISKNGN 311 (560)
Q Consensus 249 a~~lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La--------~EL~~Lk~e~-----e~~ni~dlke~~s~~~~ 311 (560)
-..+.+-|...|+-.+...++..-+|.|..+=+.-+ ..|..|++++ +-+|-..|||++-++..
T Consensus 651 Ie~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~ 726 (762)
T PLN03229 651 IESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEA 726 (762)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHH
Confidence 377889999999999999999999999888732222 2455555554 34577788885544433
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.72 E-value=39 Score=41.28 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 170 QFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASM 219 (560)
Q Consensus 170 kFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~A 219 (560)
....|+..|++++.-|.++ |....+..+....-++++.-|...
T Consensus 777 ~~~d~~~~re~rlkdl~ke-------ik~~k~~~e~~~~~~ek~~~e~e~ 819 (1174)
T KOG0933|consen 777 KMKDAKANRERRLKDLEKE-------IKTAKQRAEESSKELEKRENEYER 819 (1174)
T ss_pred HHhHhhhhhHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665543 333333344444444444444433
No 32
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.29 E-value=43 Score=40.88 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 134 DTSVLKQHYEKKVLELEQEKKILQVHLQQ 162 (560)
Q Consensus 134 kl~KlKe~~EkKLs~Le~ElK~lqVqLmk 162 (560)
.|..++++|...+..+..+...+..+.++
T Consensus 703 ~l~~qkee~~~~~~~~I~~~~~~~~~~~~ 731 (1072)
T KOG0979|consen 703 DLDRQEEEYAASEAKKILDTEDMRIQSIR 731 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35666677777666666665555533333
No 33
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=90.55 E-value=33 Score=38.25 Aligned_cols=31 Identities=42% Similarity=0.629 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 258 HELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQA 297 (560)
Q Consensus 258 ~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~ 297 (560)
-||||++.+.|-+.+| |-+||.-|+.++.++
T Consensus 508 yELEVLLRVKEsEiQY---------LKqEissLkDELQta 538 (593)
T KOG4807|consen 508 YELEVLLRVKESEIQY---------LKQEISSLKDELQTA 538 (593)
T ss_pred hhHHHHHHhhHHHHHH---------HHHHHHHHHHHHHHH
Confidence 4789999888877666 445566666666654
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.23 E-value=54 Score=40.29 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhc
Q 008589 22 DVDLLKNYVSKIQELEGELLRVKST 46 (560)
Q Consensus 22 ~~~l~k~yv~kIqeLe~El~~~k~~ 46 (560)
-.+-+..+=..+++|++.+..|...
T Consensus 509 a~~~l~~~~~~~~~~~~~~~~l~~~ 533 (1201)
T PF12128_consen 509 AEEELRQARRELEELRAQIAELQRQ 533 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566667777777777666555
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=89.43 E-value=48 Score=38.55 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 008589 135 TSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKE 188 (560)
Q Consensus 135 l~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe 188 (560)
+...+..++.++..++.++..++..+.. +..+.+.|.......++++..|+.+
T Consensus 312 l~~~~~~l~~k~~el~~~l~~~~~~l~~-~~~~~e~~~~~~~~le~~~~~l~~~ 364 (880)
T PRK02224 312 VEARREELEDRDEELRDRLEECRVAAQA-HNEEAESLREDADDLEERAEELREE 364 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466777777777777666654443 4444566666666666666555543
No 36
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.35 E-value=46 Score=38.16 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhH-------------HHHHHHHHHHHHH--------HHHHHHHHHH
Q 008589 158 VHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNE-------------YEMHKLLALNQRQ--------KMVLQRKTEE 216 (560)
Q Consensus 158 VqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e-------------~Ei~kLea~~~kQ--------~~VLKRKtEE 216 (560)
|.+.-+.+.=.+.-.-|+...+.||.+++..-++.= ..|+-+.+++..+ +..+++|+.+
T Consensus 200 ~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~ 279 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQE 279 (546)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455555555556666778888888888877655432 3477788888775 4456677777
Q ss_pred HH
Q 008589 217 AS 218 (560)
Q Consensus 217 A~ 218 (560)
+.
T Consensus 280 i~ 281 (546)
T KOG0977|consen 280 IR 281 (546)
T ss_pred HH
Confidence 66
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.28 E-value=61 Score=39.50 Aligned_cols=62 Identities=27% Similarity=0.351 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 164 IKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLE 229 (560)
Q Consensus 164 MKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~Le 229 (560)
+|+...+.|..-+.....+..|-|+--+...|+.-|.+ +.--|+|++++|-+..--|++...
T Consensus 380 LKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r----~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 380 LKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRR----QKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555655555555666666666666666655543 455688888888876666665543
No 38
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.19 E-value=29 Score=35.64 Aligned_cols=72 Identities=25% Similarity=0.416 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
Q 008589 103 SSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQ---------------------VHLQ 161 (560)
Q Consensus 103 ~~lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lq---------------------VqLm 161 (560)
.-||-.+++.|.....=|..-+.=...+..+.....|++||. +|..|||+|| +.--
T Consensus 4 RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~---DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~R 80 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEA---DLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENR 80 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHH---HHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHH
Confidence 346666777666666666666544444455566677888874 5555666665 4556
Q ss_pred HHHHHHHHHHHHHHHH
Q 008589 162 QKIKQESEQFRMWKAS 177 (560)
Q Consensus 162 kkMKEESekFR~wk~~ 177 (560)
+.|-...++|+.++..
T Consensus 81 k~IE~~MErFK~vEke 96 (233)
T PF04065_consen 81 KLIEEQMERFKVVEKE 96 (233)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777888999887643
No 39
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.15 E-value=49 Score=38.27 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 008589 28 NYVSKIQELEGELLRVKST 46 (560)
Q Consensus 28 ~yv~kIqeLe~El~~~k~~ 46 (560)
..+++|++||..|..|++-
T Consensus 47 ~~~~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 47 HDISRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3789999999999888876
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.84 E-value=49 Score=37.89 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=25.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHhhhc
Q 008589 254 QAIEHELEVT-VRVHEVRSEYERQMEERARMANEVARLKEESEQA--NLRRVKKRISKN 309 (560)
Q Consensus 254 ~WL~~ELEv~-vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~--ni~dlke~~s~~ 309 (560)
.=|..|-+.. |.+.|.++.|..|-.-=+.+..|=.+|..+..++ .|+.|..++-..
T Consensus 399 ~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 399 KQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333 4555555555554443333344444444444433 266665555444
No 41
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.09 E-value=51 Score=37.17 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 008589 192 NEYEMHKL 199 (560)
Q Consensus 192 ~e~Ei~kL 199 (560)
-..++.+|
T Consensus 329 l~~Ei~~l 336 (569)
T PRK04778 329 LKEEIDRV 336 (569)
T ss_pred HHHHHHHH
Confidence 33333333
No 42
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.85 E-value=58 Score=37.54 Aligned_cols=90 Identities=24% Similarity=0.245 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHH---HHHHHHHH------HHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHH
Q 008589 138 LKQHYEKKVLELEQEK-------KILQ---VHLQQKIK------QESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLA 201 (560)
Q Consensus 138 lKe~~EkKLs~Le~El-------K~lq---VqLmkkMK------EESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea 201 (560)
-+++|+.+|..|..|| .+++ -.|-+++. ++-++....+.+-.|+|..+..+--+...++-.++.
T Consensus 288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 288 KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3477888888887776 2232 12333333 445666666777778888888777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 202 LNQRQKMVLQRKTEEASMATKRLKEL 227 (560)
Q Consensus 202 ~~~kQ~~VLKRKtEEA~AA~KRLKe~ 227 (560)
+.+.+---|..+.-.-+-+.+||+-.
T Consensus 368 ~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 368 EIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555565665666666666544
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.61 E-value=35 Score=34.70 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=26.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 254 QAIEHELEV-TVRVHEVRSEYERQMEERARMANEVARLKE 292 (560)
Q Consensus 254 ~WL~~ELEv-~vsv~Eae~~LErLmeeRa~La~EL~~Lk~ 292 (560)
.-++.||.- ...+......|+.||...-.|-.||+..+.
T Consensus 265 ~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 265 AELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444433 356667777788888888888888887665
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.42 E-value=86 Score=39.05 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhhccC
Q 008589 28 NYVSKIQELEGELLRVKSTHN 48 (560)
Q Consensus 28 ~yv~kIqeLe~El~~~k~~~~ 48 (560)
+|+--|++|..+|.+|...+.
T Consensus 264 ry~~~I~~~~~rv~~L~e~~s 284 (1293)
T KOG0996|consen 264 RYKEPIEELMRRVERLNEDRS 284 (1293)
T ss_pred ccchhHHHHHHHHHhhhHHHH
Confidence 589999999999988866633
No 45
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.75 E-value=25 Score=34.87 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHH
Q 008589 149 LEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQ 204 (560)
Q Consensus 149 Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~ 204 (560)
++.+|+.+.-+|+ .++++...+..-+....+||.+|+.....-.-++..++..++
T Consensus 129 ~e~~i~~Le~ki~-el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 129 LESEIKELEMKIL-ELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333 555566666666666779999999998888888888777665
No 46
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=84.40 E-value=47 Score=33.24 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhH----HHHHHHHHHHHHHHHHHHHH
Q 008589 140 QHYEKKVLELEQEKKILQ--VHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNE----YEMHKLLALNQRQKMVLQRK 213 (560)
Q Consensus 140 e~~EkKLs~Le~ElK~lq--VqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e----~Ei~kLea~~~kQ~~VLKRK 213 (560)
..|..+++.|+..+-... ...|++==.....|+.++..-++||..|+++-.+.. ..++.++.++-+-...|.+-
T Consensus 43 s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke 122 (206)
T PF14988_consen 43 SRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKE 122 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666652221 222222223446677777777777777777777633 33556666666666666555
Q ss_pred H
Q 008589 214 T 214 (560)
Q Consensus 214 t 214 (560)
+
T Consensus 123 ~ 123 (206)
T PF14988_consen 123 A 123 (206)
T ss_pred H
Confidence 5
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.24 E-value=1.1e+02 Score=37.43 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEK-----KVLELEQEKKILQVHLQQKIKQ---ESEQFRMWKASREK 180 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~Ek-----KLs~Le~ElK~lqVqLmkkMKE---ESekFR~wk~~reK 180 (560)
+.-++.+|..+|+.+-.+ ..++-.||++=-.. ++.+....|-..++.|+|+++. |.+....|+.+...
T Consensus 229 Lr~QvrdLtEkLetlR~k----R~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLK----RAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred HHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666555422 22232333322211 2334444455556777777654 55777788877777
Q ss_pred HHHHH
Q 008589 181 EVLQL 185 (560)
Q Consensus 181 EIaQL 185 (560)
|++-+
T Consensus 305 emad~ 309 (1243)
T KOG0971|consen 305 EMADT 309 (1243)
T ss_pred HHHHH
Confidence 65543
No 48
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.18 E-value=1.2e+02 Score=37.53 Aligned_cols=176 Identities=19% Similarity=0.278 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-cchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008589 108 KLDRELKELDKKLEQKEAEMKRFTG-ADTSVLKQ-----HYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKE 181 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~~~q-~kl~KlKe-----~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKE 181 (560)
+++..|..++.||++||.+-+.... .++-|.+. -|++.+.+.+.+|-.+-+.-. ..-+++.++...-..++-+
T Consensus 188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~-~~~e~s~~~~~~~~~~~d~ 266 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS-SAPEESEQYIDALDKVEDE 266 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHH
Confidence 4667899999999999988533321 23344443 368888888888877754332 2346677788878888888
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHH
Q 008589 182 VLQLKKEGRRNEYEMHKLLALNQR----QKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIE 257 (560)
Q Consensus 182 IaQLKKe~RK~e~Ei~kLea~~~k----Q~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs~~g~~~~a~~lq~WL~ 257 (560)
+.+|+.+-..-++.+.-|....++ +-.+++.|| +++=..+++. ..-.|+..+.......++...+
T Consensus 267 ~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt----~lel~~kdlq-------~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 267 SEDLKCEIKELENKLTNLREEKEQLKARETKISKKKT----KLELKIKDLQ-------DQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhhHHHH-------HHhhhhhhhhhhHHHHHHHHHH
Confidence 888888888888877776663221 122222221 1111122221 1111222211111233344333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008589 258 HELEVTVRVHEVRSEYERQMEERARMANEVARLKEESE 295 (560)
Q Consensus 258 ~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e 295 (560)
..-+..-.+.+..-.|..|..+-+.+...|+.|++..-
T Consensus 336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344455666677788888887778888888877544
No 49
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.87 E-value=46 Score=33.94 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008589 108 KLDRELKELDKKLEQKEAEMK 128 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk 128 (560)
.++++..||..||.+++.+++
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~ 22 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMR 22 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 456677788888888886653
No 50
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.51 E-value=84 Score=35.42 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTGADTSVLKQHY---EKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKE---- 181 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~---EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKE---- 181 (560)
++.++.-|.++.++++.-- ........++|++| +.....|+...|.+..+-=..+-+|..+||..-...+||
T Consensus 220 i~~kv~flerkv~eledd~-~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle 298 (502)
T KOG0982|consen 220 IERKVRFLERKVQELEDDQ-NIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLE 298 (502)
T ss_pred HHHHHHHHHHHHHHhhcch-hccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666665321 12334467778776 455556666666666666666778888888776666665
Q ss_pred -------HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 182 -------VLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRK 232 (560)
Q Consensus 182 -------IaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRK 232 (560)
+.||..+.-.....+.+|.++-.+++.=++|--+..-+++-||......++
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~ 356 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRV 356 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 234444444555568888999999999999988888888888887776655
No 51
>PRK11637 AmiB activator; Provisional
Probab=82.16 E-value=79 Score=34.16 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=7.8
Q ss_pred CCCCCCccccccc
Q 008589 440 GARRKPLSDIGNT 452 (560)
Q Consensus 440 ~~~rkpl~dign~ 452 (560)
+..-.||..+|+|
T Consensus 389 V~~G~~ig~~g~~ 401 (428)
T PRK11637 389 VRAGQPIALVGSS 401 (428)
T ss_pred ECCCCeEEeecCC
Confidence 3455666666665
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.01 E-value=1.4e+02 Score=36.92 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=60.6
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh----------hhccccc-hHHHHHHHHHHHHHHHHHHHHHH--H
Q 008589 92 EIEDEEKELEHSSLQEKLDRELKELDKKLEQKEAEM----------KRFTGAD-TSVLKQHYEKKVLELEQEKKILQ--V 158 (560)
Q Consensus 92 Ei~~~eKE~eh~~lQ~k~~KeLeEL~kRLqelE~em----------k~~~q~k-l~KlKe~~EkKLs~Le~ElK~lq--V 158 (560)
+|..++|+++.......--..++.+-.+|++|.++| .+..+.. +++ .+.++..+..+++... +
T Consensus 236 ~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~ 311 (1074)
T KOG0250|consen 236 EIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKI 311 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 444444444443333333345777777888888776 1111111 111 1223333333332222 1
Q ss_pred H----HHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 159 H----LQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRL 224 (560)
Q Consensus 159 q----LmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRL 224 (560)
. =+..+...-..++..--.+..||.-+++.-+-..-++-.++.....-.+-.+....++-.++|.+
T Consensus 312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I 381 (1074)
T KOG0250|consen 312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQI 381 (1074)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11233333344444445555566666666655555555555555555555555555555544444
No 53
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.58 E-value=1.4e+02 Score=36.80 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 266 VHEVRSEYERQMEERARMANEVARLK 291 (560)
Q Consensus 266 v~Eae~~LErLmeeRa~La~EL~~Lk 291 (560)
++++++++.++-.+-+....++..|.
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLL 933 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 54
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.46 E-value=45 Score=30.89 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=12.2
Q ss_pred HHHHhHHhhhhHHHHHHHHH
Q 008589 182 VLQLKKEGRRNEYEMHKLLA 201 (560)
Q Consensus 182 IaQLKKe~RK~e~Ei~kLea 201 (560)
-.|..-+-||++.||.+|+.
T Consensus 128 ~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 128 KTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666654
No 55
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.16 E-value=63 Score=33.59 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 008589 163 KIKQESEQFRMWKASREKEVLQLKKEGRRNEYEM--HKLLALNQRQKMVLQRKTEEASM 219 (560)
Q Consensus 163 kMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei--~kLea~~~kQ~~VLKRKtEEA~A 219 (560)
.+.+|..-|+. +...-+-..|+.++..=.-.+| .+.+++..+++++++||..+|..
T Consensus 90 ~ieqeik~~q~-elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~ 147 (246)
T KOG4657|consen 90 GIEQEIKATQS-ELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADI 147 (246)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34444444444 4444444455554443333343 44555588899999999888554
No 56
>PRK02224 chromosome segregation protein; Provisional
Probab=79.94 E-value=1.3e+02 Score=35.18 Aligned_cols=7 Identities=14% Similarity=0.534 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008589 32 KIQELEG 38 (560)
Q Consensus 32 kIqeLe~ 38 (560)
.|.+|++
T Consensus 188 ~~~~~~~ 194 (880)
T PRK02224 188 SLDQLKA 194 (880)
T ss_pred HHHHHHH
Confidence 3333333
No 57
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=79.51 E-value=1.3e+02 Score=35.10 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHhhh
Q 008589 257 EHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQAN--LRRVKKRISK 308 (560)
Q Consensus 257 ~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n--i~dlke~~s~ 308 (560)
..|-+|..-+.+++++=..+.++|+.++.+|..|..++.-.+ |-.|+++|..
T Consensus 289 ~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 289 QKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366777777888888888899999999999999988877664 6666664443
No 58
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=79.41 E-value=1.3e+02 Score=34.86 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008589 140 QHYEKKVLELEQEKKILQVHLQ 161 (560)
Q Consensus 140 e~~EkKLs~Le~ElK~lqVqLm 161 (560)
+..+.++.+|..+--..++-|+
T Consensus 404 ~~s~~rl~~L~~qWe~~R~pL~ 425 (594)
T PF05667_consen 404 EASEQRLVELAQQWEKHRAPLI 425 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3344555555555544444443
No 59
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.63 E-value=9.4 Score=44.68 Aligned_cols=58 Identities=10% Similarity=0.304 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHHHHHHhhhccC
Q 008589 253 MQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQAN---------LRRVKKRISKNGN 311 (560)
Q Consensus 253 q~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n---------i~dlke~~s~~~~ 311 (560)
..-|--||.+. .+..++.+|.+.-.+...|...|...+..++... |..|.+.+..+..
T Consensus 255 v~DLfSEl~~~-EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 255 VSDLFSELNLS-EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred cchhhhhcchH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555543 4566777777777777777777777777766542 6666665555544
No 60
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=77.93 E-value=1.4e+02 Score=34.33 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=80.1
Q ss_pred hhhHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHh------------h-h----------------------------
Q 008589 92 EIEDEEKELEHSSLQEKLDR-ELKELDKKLEQKEAEM------------K-R---------------------------- 129 (560)
Q Consensus 92 Ei~~~eKE~eh~~lQ~k~~K-eLeEL~kRLqelE~em------------k-~---------------------------- 129 (560)
.|..++.|.||.+|+-.+.+ .|+.=.+|+.+++.++ . .
T Consensus 317 KIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~~e~~se~s~~~~~e~~~~t~l~gml 396 (518)
T PF10212_consen 317 KIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEASEQQSEASSQSVDEPLQPTSLSGML 396 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhcccccccccccccccccccccccccccc
Confidence 78889999999998877776 5555666777666653 0 0
Q ss_pred ---------ccccchHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhh
Q 008589 130 ---------FTGADTSVLKQHYEKKVLELEQEKKILQV----------HLQQKIKQESEQFRMWKASREKEVLQLKKEGR 190 (560)
Q Consensus 130 ---------~~q~kl~KlKe~~EkKLs~Le~ElK~lqV----------qLmkkMKEESekFR~wk~~reKEIaQLKKe~R 190 (560)
-..++-..++.+|..+|.+|..++..... .|.+++... + +.+....-|+..+...-+
T Consensus 397 ~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~a-E---~ek~~l~eeL~~a~~~i~ 472 (518)
T PF10212_consen 397 TSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESA-E---KEKESLEEELKEANQNIS 472 (518)
T ss_pred cccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHH
Confidence 00111245678899999999988855541 233333222 1 123334445666666667
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 191 RNEYEMHKLLALNQRQKMVLQRKTEEASMATKRL 224 (560)
Q Consensus 191 K~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRL 224 (560)
+.+-|+..-..-++.|-.+| +|-.+.+|.+|
T Consensus 473 ~LqDEL~TTr~NYE~QLs~M---SEHLasmNeqL 503 (518)
T PF10212_consen 473 RLQDELETTRRNYEEQLSMM---SEHLASMNEQL 503 (518)
T ss_pred HHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHH
Confidence 77777777777777787777 56666666655
No 61
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.84 E-value=80 Score=36.84 Aligned_cols=134 Identities=19% Similarity=0.263 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHH---H---------------HHHHHHHHHHHH---HHHHHHHHhHHHHHHHhHHhhhhHHHHH
Q 008589 139 KQHYEKKVLELEQEKKIL---Q---------------VHLQQKIKQESE---QFRMWKASREKEVLQLKKEGRRNEYEMH 197 (560)
Q Consensus 139 Ke~~EkKLs~Le~ElK~l---q---------------VqLmkkMKEESe---kFR~wk~~reKEIaQLKKe~RK~e~Ei~ 197 (560)
=.+|+.||...+.++..+ . ..-+.+.+++.. +... ...-..++.+..+.-++....+.
T Consensus 354 Y~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~-~~~e~~ei~~~~~~i~~~~~~ve 432 (652)
T COG2433 354 YLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGT-EEEERREITVYEKRIKKLEETVE 432 (652)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhcccccccc-ccccccchhHHHHHHHHHHHHHH
Confidence 366777777777666443 1 333444444432 2222 11223567777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 008589 198 KLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEVT-VRVHEVRSEYERQ 276 (560)
Q Consensus 198 kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs~~g~~~~a~~lq~WL~~ELEv~-vsv~Eae~~LErL 276 (560)
+|+..+. -|++.++|-.+-.-.|+.-|+.=+ . .....-|+..|++.+ -.+..++..|+..
T Consensus 433 ~l~~e~~----~L~~~~ee~k~eie~L~~~l~~~~----r-----------~~~~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 433 RLEEENS----ELKRELEELKREIEKLESELERFR----R-----------EVRDKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----H-----------HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7776554 466666665544444444443211 0 134568999999966 5788899999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 008589 277 MEERARMANEVARLKE 292 (560)
Q Consensus 277 meeRa~La~EL~~Lk~ 292 (560)
-..+..|.+.|+.|+.
T Consensus 494 ~~~ve~L~~~l~~l~k 509 (652)
T COG2433 494 KKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888999999998884
No 62
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=75.84 E-value=91 Score=31.26 Aligned_cols=80 Identities=28% Similarity=0.334 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-----hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 103 SSLQEKLDRELKELDKKLEQKEAEM-----KRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKAS 177 (560)
Q Consensus 103 ~~lQ~k~~KeLeEL~kRLqelE~em-----k~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~ 177 (560)
--+...|.+...+|...|-+.+..+ .+..-..+..+|+..+..|..|+.++..++..-.-.+.+--.+|=..++.
T Consensus 39 ~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~ 118 (206)
T PF14988_consen 39 QELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKAR 118 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888777777664 33355678999999999999999999999988777777777788887777
Q ss_pred hHHHH
Q 008589 178 REKEV 182 (560)
Q Consensus 178 reKEI 182 (560)
-++++
T Consensus 119 LEke~ 123 (206)
T PF14988_consen 119 LEKEA 123 (206)
T ss_pred HHHHH
Confidence 77765
No 63
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.81 E-value=1.8e+02 Score=36.03 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhh
Q 008589 24 DLLKNYVSKIQELEGELLRVKS 45 (560)
Q Consensus 24 ~l~k~yv~kIqeLe~El~~~k~ 45 (560)
-|||.|..-|.-|..+|.-.+.
T Consensus 404 ~llKd~~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAARE 425 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh
Confidence 4788899999999988865443
No 64
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=73.48 E-value=1.4e+02 Score=32.18 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccc-hHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHh
Q 008589 112 ELKELDKKLEQKEAEMKRFTGAD-TSVLKQHYEKKVLELEQEKKILQ------------VHLQQKIKQESEQFRMWKASR 178 (560)
Q Consensus 112 eLeEL~kRLqelE~emk~~~q~k-l~KlKe~~EkKLs~Le~ElK~lq------------VqLmkkMKEESekFR~wk~~r 178 (560)
.|.-..+||+.+-.+|......+ ..+-...++.||.+|=.=+..+. ++-++.|-+++..|-.-=..-
T Consensus 262 ~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~l 341 (388)
T PF04912_consen 262 KLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSEL 341 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566665555553221111 11122356777777766665554 678889999999999988888
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 179 EKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTE 215 (560)
Q Consensus 179 eKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtE 215 (560)
+..+..|...-.+.+.-+..++........++...++
T Consensus 342 e~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~ 378 (388)
T PF04912_consen 342 ESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVK 378 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887777777765444
No 65
>PHA02562 46 endonuclease subunit; Provisional
Probab=72.76 E-value=1.5e+02 Score=32.43 Aligned_cols=215 Identities=13% Similarity=0.259 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCcchhhhHHHHHHhh-
Q 008589 24 DLLKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEEKELEH- 102 (560)
Q Consensus 24 ~l~k~yv~kIqeLe~El~~~k~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~l~e~~s~~~~~~~~~~~Ei~~~eKE~eh- 102 (560)
+.++..-..|+.|+.++..+..- +..+...+..-.......+..+.++++.
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~----------------------------i~~~~~~i~~~~~~~~~~i~~l~~e~~~l 225 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQ----------------------------IKTYNKNIEEQRKKNGENIARKQNKYDEL 225 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------HHH
Q 008589 103 SSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQ--VHLQQKIKQESEQ-------FRM 173 (560)
Q Consensus 103 ~~lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lq--VqLmkkMKEESek-------FR~ 173 (560)
......+..++..++..|..+..+ ...|+..|..++.++..++ +....++..-.+. .+.
T Consensus 226 ~~~~~~l~~~l~~l~~~i~~l~~~------------i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~ 293 (562)
T PHA02562 226 VEEAKTIKAEIEELTDELLNLVMD------------IEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQ 293 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q ss_pred HHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHH
Q 008589 174 WKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALM 253 (560)
Q Consensus 174 wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs~~g~~~~a~~lq 253 (560)
.... .-+++.|...-.--+.++..+...-..-+....+ ..++..-...++..+...+ ..+.
T Consensus 294 ~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~-----------------~~i~ 354 (562)
T PHA02562 294 ISEG-PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNK-----------------QSLI 354 (562)
T ss_pred CCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-----------------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 254 QAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQA 297 (560)
Q Consensus 254 ~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~ 297 (560)
.-+..-..+...+.+++.....+.++-..+..+|..+..+...+
T Consensus 355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
No 66
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.82 E-value=1.2e+02 Score=31.11 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhh
Q 008589 283 MANEVARLKEESEQA 297 (560)
Q Consensus 283 La~EL~~Lk~e~e~~ 297 (560)
|..+|..|+.+++.+
T Consensus 187 lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 187 LQEQLKELKSELEQL 201 (246)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555433
No 67
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.53 E-value=1.4e+02 Score=30.62 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 142 YEKKVLELEQEKKILQ--VHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASM 219 (560)
Q Consensus 142 ~EkKLs~Le~ElK~lq--VqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~A 219 (560)
|++....+.+|+..+. -+++...+.|.+.-...+.....|+.|...+=-..+..|...++...+-..-..|.++|...
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~ 92 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKP 92 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554 35666677777777777777777777777776667777777777777777777888877665
Q ss_pred H
Q 008589 220 A 220 (560)
Q Consensus 220 A 220 (560)
+
T Consensus 93 L 93 (230)
T PF10146_consen 93 L 93 (230)
T ss_pred H
Confidence 3
No 68
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.94 E-value=2.3e+02 Score=32.90 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008589 254 QAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESE 295 (560)
Q Consensus 254 ~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e 295 (560)
.++.+=+||.-.+...+..+++.+.|=+.|.++|..|...++
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555699999999999999999999999999999988776
No 69
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.82 E-value=1.6e+02 Score=31.07 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 008589 159 HLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQK-MVLQRKTEEASMA 220 (560)
Q Consensus 159 qLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~-~VLKRKtEEA~AA 220 (560)
.+|.+.+++-..-..-+..-+.++.+|..-.-..+..+..|..+...|. .|+.-+-+++.+.
T Consensus 148 ~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~ 210 (265)
T COG3883 148 KILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASAL 210 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6888888888888888888888888887777777777777777665544 3444444555443
No 70
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.62 E-value=2.7e+02 Score=33.65 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc--------------cchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTG--------------ADTSVLKQHYEKKVLELEQEKKILQ------VHLQQKIKQES 168 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q--------------~kl~KlKe~~EkKLs~Le~ElK~lq------VqLmkkMKEES 168 (560)
|.-|-..||+||.-|..+++..+. ..+.-|-...+.+|.+....+..|| .+.+-..|+|.
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 455667777888777776533211 1133444667888888777776666 56677779999
Q ss_pred HHHHHHHHHhHHHHHHHhH
Q 008589 169 EQFRMWKASREKEVLQLKK 187 (560)
Q Consensus 169 ekFR~wk~~reKEIaQLKK 187 (560)
.+|+..-..++.++...|+
T Consensus 472 k~~~~~~~ekd~~l~~~kq 490 (861)
T PF15254_consen 472 KRLRKMFQEKDQELLENKQ 490 (861)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 9999998888888776654
No 71
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=67.75 E-value=1.8e+02 Score=31.34 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008589 208 MVLQRKTEEASMATKRLKELLES 230 (560)
Q Consensus 208 ~VLKRKtEEA~AA~KRLKe~Lek 230 (560)
+-|..+++...+-.+.|...|..
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34667788888877778888774
No 72
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.61 E-value=1.6e+02 Score=30.58 Aligned_cols=122 Identities=24% Similarity=0.296 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 141 HYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMA 220 (560)
Q Consensus 141 ~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA 220 (560)
++...+..+...++.. -..+++++.+-+.-+.--...+.++.-|+.+.++.+.+|+.+.
T Consensus 14 ~lD~e~~rl~~~~~~~-~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r-------------------- 72 (239)
T COG1579 14 KLDLEKDRLEPRIKEI-RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIR-------------------- 72 (239)
T ss_pred HHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 4444444454444422 3445566666666666666666666666666666665555443
Q ss_pred HHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 221 TKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEVTV-RVHEVRSEYERQMEERARMANEVARLKEESEQA 297 (560)
Q Consensus 221 ~KRLKe~LekRKas~Rk~sgs~~g~~~~a~~lq~WL~~ELEv~v-sv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~ 297 (560)
.|++.+-.+..++ +. ..-.+-|.+|+.++- ....+++++..++..++.|..++..++..+..+
T Consensus 73 -~r~~~~e~kl~~v------~~-------~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 73 -ERIKRAEEKLSAV------KD-------ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred -HHHHHHHHHHhcc------cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222211 11 233344555555552 455666667777777777777666666655544
No 73
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=67.02 E-value=1.5e+02 Score=30.05 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 008589 159 HLQQKIKQESEQFRMWKASRE 179 (560)
Q Consensus 159 qLmkkMKEESekFR~wk~~re 179 (560)
..+..++.+..+|..++.-.+
T Consensus 122 ey~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 122 EYEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544433
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.99 E-value=3.7e+02 Score=34.59 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhh
Q 008589 29 YVSKIQELEGELLR 42 (560)
Q Consensus 29 yv~kIqeLe~El~~ 42 (560)
++..|.++...+..
T Consensus 146 ~~~ti~Elk~~i~e 159 (1486)
T PRK04863 146 RVLTLNELKDKAAA 159 (1486)
T ss_pred ccCCHHHHHHHHHH
Confidence 35556666665543
No 75
>PRK11637 AmiB activator; Provisional
Probab=64.76 E-value=2.1e+02 Score=30.97 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008589 272 EYERQMEERARMANEVARLKE 292 (560)
Q Consensus 272 ~LErLmeeRa~La~EL~~Lk~ 292 (560)
.+..|..+...|...|+.++.
T Consensus 234 ~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 234 QLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555443
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=64.72 E-value=3.1e+02 Score=32.95 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhh
Q 008589 249 EKALMQAIEHELEVT-VRVHEVRSEYERQMEER----ARMANEVARLKEESEQA 297 (560)
Q Consensus 249 a~~lq~WL~~ELEv~-vsv~Eae~~LErLmeeR----a~La~EL~~Lk~e~e~~ 297 (560)
+++.-.++.+|++=+ ..+.+++..++.|+++= .-|-++|..|+.-++..
T Consensus 603 aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~ 656 (961)
T KOG4673|consen 603 AARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKA 656 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhh
Confidence 455666777777655 46777777777777762 12334666666655544
No 77
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.66 E-value=2.4e+02 Score=31.61 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008589 141 HYEKKVLELEQEKKILQVH 159 (560)
Q Consensus 141 ~~EkKLs~Le~ElK~lqVq 159 (560)
+.++.|.+++..|.+++++
T Consensus 91 ~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 91 KLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3455666666666666543
No 78
>PRK12704 phosphodiesterase; Provisional
Probab=64.59 E-value=1.8e+02 Score=32.91 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 195 EMHKLLALNQRQKMVLQRKTEEASMATKRLKELLE 229 (560)
Q Consensus 195 Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~Le 229 (560)
++...+..-.+++.-|..+.+++......+...|+
T Consensus 111 eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~ 145 (520)
T PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444555544444444444
No 79
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=64.49 E-value=51 Score=32.03 Aligned_cols=63 Identities=30% Similarity=0.435 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc------cccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 108 KLDRELKELDKKLEQKEAEMKRF------TGADTSVLKQH---YEKKVLELEQEKKILQVHLQQKIKQESEQ 170 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~~------~q~kl~KlKe~---~EkKLs~Le~ElK~lqVqLmkkMKEESek 170 (560)
.+..++..|..++..++.+++.. -++.+..|.-+ .|.++..|+.|=+.|--++|.+|..|+++
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~ 191 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAER 191 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554222 11234444433 36677777777777767788888777765
No 80
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=64.19 E-value=1.1e+02 Score=36.18 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHH
Q 008589 135 TSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQR 205 (560)
Q Consensus 135 l~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~k 205 (560)
+.|-+.+||+|+..-+.+|+.+.--.+--|-.|.-+|..--..-.-|+++|+.+---+..++.+|..+--+
T Consensus 193 lEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~ 263 (861)
T KOG1899|consen 193 LEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQ 263 (861)
T ss_pred HHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHH
Confidence 34445778999887666665554111222333444443333334458999998887777777776655433
No 81
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.00 E-value=1.4e+02 Score=31.63 Aligned_cols=13 Identities=46% Similarity=0.491 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 008589 112 ELKELDKKLEQKE 124 (560)
Q Consensus 112 eLeEL~kRLqelE 124 (560)
+-+++.+.|+++|
T Consensus 58 Ee~~l~~eL~~LE 70 (314)
T PF04111_consen 58 EEEELLQELEELE 70 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=63.31 E-value=3.1e+02 Score=32.43 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=11.6
Q ss_pred hHHHHHHhhhccCCC
Q 008589 299 LRRVKKRISKNGNRA 313 (560)
Q Consensus 299 i~dlke~~s~~~~~~ 313 (560)
|.|||-++..++.-+
T Consensus 645 i~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 645 IEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHhcC
Confidence 889998887776644
No 83
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=62.52 E-value=50 Score=28.74 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Q 008589 112 ELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKK 154 (560)
Q Consensus 112 eLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK 154 (560)
+++..+..|-+||. .-.+||++||..|..|..+|-
T Consensus 40 Em~~ir~~v~eLE~--------~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 40 EMQQIRQKVYELEQ--------AHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666653 346788888888888888773
No 84
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=61.74 E-value=2e+02 Score=29.68 Aligned_cols=12 Identities=8% Similarity=0.772 Sum_probs=5.8
Q ss_pred HHHHHHHHHhHH
Q 008589 169 EQFRMWKASREK 180 (560)
Q Consensus 169 ekFR~wk~~reK 180 (560)
.+|..|...+..
T Consensus 184 ~~~q~W~~kK~~ 195 (264)
T PF13904_consen 184 QRYQEWERKKKE 195 (264)
T ss_pred HHHHHHHHHHHH
Confidence 455555554433
No 85
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=61.35 E-value=1.1e+02 Score=31.08 Aligned_cols=49 Identities=29% Similarity=0.415 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---ccccchHHHHHHHHHHHHHHHHHHHHH
Q 008589 108 KLDRELKELDKKLEQKEAEMKR---FTGADTSVLKQHYEKKVLELEQEKKIL 156 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~---~~q~kl~KlKe~~EkKLs~Le~ElK~l 156 (560)
.|.++|.+|+.+|...+.+-.. ...++..-+|.+||.=|.--+.++..+
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~ 151 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLREL 151 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999998877543 345667888999988888788887766
No 86
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.59 E-value=4.3e+02 Score=33.12 Aligned_cols=66 Identities=23% Similarity=0.476 Sum_probs=37.5
Q ss_pred ccCcchhhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH---HHHHHHHHHH
Q 008589 86 VEDISDEIEDEEKELEHSS-LQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYE---KKVLELEQEK 153 (560)
Q Consensus 86 ~~~~~~Ei~~~eKE~eh~~-lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~E---kKLs~Le~El 153 (560)
.+.+...++..++++...- -..+|.+++...++.+.++|..+.. ...+.++++.+- ++|...+..|
T Consensus 243 i~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e--rp~li~~ke~~~~~k~rl~~~~k~i 312 (1141)
T KOG0018|consen 243 IPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE--RPELIKVKENASHLKKRLEEIEKDI 312 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHhhcchhhccchhHHHHhhhhH
Confidence 3333334444444444433 3446777888888888888877644 455666666553 3444444444
No 87
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.23 E-value=2.3e+02 Score=29.84 Aligned_cols=139 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCcchhhhHHHHHHhhhhhHH
Q 008589 28 NYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEEKELEHSSLQE 107 (560)
Q Consensus 28 ~yv~kIqeLe~El~~~k~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~l~e~~s~~~~~~~~~~~Ei~~~eKE~eh~~lQ~ 107 (560)
++.++++++.+||+..+.- . +.++.++..+++.+.-.+..+.-+.
T Consensus 60 ~~~~~l~~ak~eLqe~eek------------------------------~-----e~~l~~Lq~ql~~l~akI~k~~~el 104 (258)
T PF15397_consen 60 SNHKQLQQAKAELQEWEEK------------------------------E-----ESKLSKLQQQLEQLDAKIQKTQEEL 104 (258)
T ss_pred cChHHHHHHHHHHHHHHHH------------------------------H-----HhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-----HHHHHHHHHHHHHHHHHHh---hhccccchHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHH
Q 008589 108 K-----LDRELKELDKKLEQKEAEM---KRFTGADTSVLKQHYEKKVLELEQEKKILQ----------------VHLQQK 163 (560)
Q Consensus 108 k-----~~KeLeEL~kRLqelE~em---k~~~q~kl~KlKe~~EkKLs~Le~ElK~lq----------------VqLmkk 163 (560)
. +|++---..-++-.|.+++ +...+..+--+.+.+..-+..|...+..-+ -.|+.+
T Consensus 105 ~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~ 184 (258)
T PF15397_consen 105 NFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQR 184 (258)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHH
Q 008589 164 IKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLAL 202 (560)
Q Consensus 164 MKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~ 202 (560)
+ -++....++=-....+|.+|+.+-.....++..|.++
T Consensus 185 ~-~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 185 T-LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 88
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=59.73 E-value=5.4e+02 Score=34.00 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------H------HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHH
Q 008589 135 TSVLKQHYEKKVLELEQEKKILQ-------V------HLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLA 201 (560)
Q Consensus 135 l~KlKe~~EkKLs~Le~ElK~lq-------V------qLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea 201 (560)
+.++...|..++..+...++... + .+.....+.--+++..-..-.-++..|++.--.++.....+.+
T Consensus 1016 ~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~ 1095 (1822)
T KOG4674|consen 1016 LLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQER 1095 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhccc
Confidence 34444556666666666654441 1 1111122222333333344445666677666666665554444
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-C-CCCCCchhhHHHHHHHHHHHHHHHH
Q 008589 202 LN-------QRQKMVLQRKTEEASMATKRLKELLESRKASSRE-T-SGSDSNIIFYEKALMQAIEHELEVT 263 (560)
Q Consensus 202 ~~-------~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk-~-sgs~~g~~~~a~~lq~WL~~ELEv~ 263 (560)
.- .++-.++.-+++.-..-|+=|-+.++...+.... . +....| ...-..+..+|.+|.+|+
T Consensus 1096 ~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g-~sdL~~iv~~LR~Ekei~ 1165 (1822)
T KOG4674|consen 1096 DWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG-LSDLQNIVSFLRKEKEIA 1165 (1822)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc-hHHHHHHHHHHHhHHHHH
Confidence 33 3344444555555555555555555554432110 1 111222 233477889999999988
No 89
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=59.43 E-value=3.3e+02 Score=31.51 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=19.5
Q ss_pred cccccchhccccCCCCCCcccccccc
Q 008589 502 IPLKLPRAMRSTTSNGSNLLRERNVD 527 (560)
Q Consensus 502 ~pl~lpra~~~~~~~~~~~~~~rn~~ 527 (560)
|-+++|+.+... ++.+.+.|.+++.
T Consensus 478 i~~~f~~~~~~~-~g~~v~i~~a~~G 502 (546)
T KOG0977|consen 478 IVFKFPSGYVLK-PGASVTIWAADAG 502 (546)
T ss_pred EEEECCCCceec-CCceEEEeecCCC
Confidence 778888888887 6667777777766
No 90
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.82 E-value=3.8e+02 Score=32.01 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008589 109 LDRELKELDKKLEQKEAEMKR 129 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~ 129 (560)
+..+++.+.+++.+++..++.
T Consensus 230 l~~e~e~l~~~~~el~~~~~~ 250 (908)
T COG0419 230 LEQEIEALEERLAELEEEKER 250 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766533
No 91
>PRK12704 phosphodiesterase; Provisional
Probab=58.75 E-value=3.2e+02 Score=31.07 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 192 NEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRK 232 (560)
Q Consensus 192 ~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRK 232 (560)
+...+.+.+..-..++.-|.++.++.....+.+..+...+.
T Consensus 101 r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~ 141 (520)
T PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQL 141 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555556666666666665555555555444
No 92
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=58.39 E-value=1.5e+02 Score=27.24 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008589 158 VHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKT 214 (560)
Q Consensus 158 VqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKt 214 (560)
|+-+.++|++...++ .+|.+|+.+-..-...+...+.--..|+..|..-+
T Consensus 58 ~~~L~~lr~e~~~~~-------~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~ 107 (132)
T PF07926_consen 58 IKELQQLREELQELQ-------QEINELKAEAESAKAELEESEASWEEQKEQLEKEL 107 (132)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455556666666554 44666666666666666666666666666665533
No 93
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.31 E-value=4e+02 Score=32.13 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 008589 104 SLQEKLDRELKELDKKLE 121 (560)
Q Consensus 104 ~lQ~k~~KeLeEL~kRLq 121 (560)
..+++++..|+++.+++-
T Consensus 490 ~~~~~l~~llee~~~~~~ 507 (809)
T KOG0247|consen 490 NDKETLDQLLEELEKRIL 507 (809)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 355566666777666653
No 94
>PF12785 VESA1_N: Variant erythrocyte surface antigen-1; InterPro: IPR024751 This entry represents variant erythrocyte surface antigen 1, versions a and b, of Babesia. Babesia bovis is a tick-borne, intra-erythrocytic, protozoal parasite of cattle that shares many lifestyle parallels with the most virulent of the human malarial parasites, Plasmodium falciparum. Babesia uses antigenic variation to establish consistent infections of long duration. The two variants of VESA1, a and b, are expressed from different but closely related genes, and variation is achieved through the involvement of a segmental gene conversion mechanism and low-frequency epigenetic in situ switching of transcriptional activity from the VESA1 gene-pair to a possible other gene pair [].
Probab=56.79 E-value=8.7 Score=42.75 Aligned_cols=30 Identities=43% Similarity=1.129 Sum_probs=22.2
Q ss_pred CccccCCCcc-ccc-cccccccCCCCCCCCCC
Q 008589 345 LCCTCSKSSL-CKT-NKCQCRAAGGACKASCG 374 (560)
Q Consensus 345 ~cCsCsk~S~-CKt-~kC~cra~g~~Cg~sCg 374 (560)
-||.|+.... |.. .+|+|-.+|..|+-.|.
T Consensus 149 ~~C~C~~ggg~csgGkkCkCa~aGkcckCCc~ 180 (462)
T PF12785_consen 149 DCCCCSTGGGGCSGGKKCKCAGAGKCCKCCCK 180 (462)
T ss_pred CCCccCCCCCCccCCccccCCCCCcccCCcCC
Confidence 5899998874 764 89999888876654443
No 95
>PRK11281 hypothetical protein; Provisional
Probab=55.39 E-value=5.2e+02 Score=32.43 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhhhhcccC-CCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 008589 199 LLALNQRQKMVLQRKTE----------EASMATKRLKELLESRKASSRET-SGSDSNIIFYEKALMQAIEHELEVTVRVH 267 (560)
Q Consensus 199 Lea~~~kQ~~VLKRKtE----------EA~AA~KRLKe~LekRKas~Rk~-sgs~~g~~~~a~~lq~WL~~ELEv~vsv~ 267 (560)
++...+.|...++.+++ ++.+ .||+++.-+.-+++.+.. .+... ...-++.-++.-..+...+.
T Consensus 221 l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in-~kr~~~se~~~~~a~~~~~~~~~~----~~p~i~~~~~~N~~Ls~~L~ 295 (1113)
T PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEAIN-SKRLTLSEKTVQEAQSQDEAARIQ----ANPLVAQELEINLQLSQRLL 295 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcccC----CChHHHHHHHHHHHHHHHHH
Confidence 34445555556666665 4544 566655554333332111 01100 01234455555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 268 EVRSEYERQMEERARMANEVARLKEE 293 (560)
Q Consensus 268 Eae~~LErLmeeRa~La~EL~~Lk~e 293 (560)
++-..++.+.++...+...+.++.+.
T Consensus 296 ~~t~~~~~l~~~~~~~~~~l~~~~q~ 321 (1113)
T PRK11281 296 KATEKLNTLTQQNLRVKNWLDRLTQS 321 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777766666666655554
No 96
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=55.28 E-value=3.6e+02 Score=30.61 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=13.0
Q ss_pred cccccccCcchhhhHHHHHHhh
Q 008589 81 DCDSKVEDISDEIEDEEKELEH 102 (560)
Q Consensus 81 ~~~~~~~~~~~Ei~~~eKE~eh 102 (560)
+|+....++..+|..+.+.+..
T Consensus 246 gy~~~~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 246 GYHLDHLDIEKEIQDLKEQIDE 267 (569)
T ss_pred CCCCCCCChHHHHHHHHHHHHH
Confidence 3444555566677666666655
No 97
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.28 E-value=4.6e+02 Score=31.54 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 162 QKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKL------------------LALNQRQKMVLQRKTEEASMATKR 223 (560)
Q Consensus 162 kkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kL------------------ea~~~kQ~~VLKRKtEEA~AA~KR 223 (560)
|.+..+-.+|.+......+.-..+=-+.+|++|.+.+- +.+..+++++-+-+-+|-+.+.+|
T Consensus 552 k~~~a~EkKfqq~i~~qqkk~l~~~~e~qkkeYK~~KE~~KeeL~e~~stPkrek~e~l~~qKe~Lq~~qaeeEa~ll~~ 631 (948)
T KOG0577|consen 552 KAASAEEKKFQQHILGQQKKELKAYLEAQKKEYKLNKEQLKEELQENPSTPKREKAEWLLRQKENLQQCQAEEEAGLLRR 631 (948)
T ss_pred HhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444445555555444444333444445555544332 233333444444455555666777
Q ss_pred HHHHHHh
Q 008589 224 LKELLES 230 (560)
Q Consensus 224 LKe~Lek 230 (560)
++..++.
T Consensus 632 qrqy~el 638 (948)
T KOG0577|consen 632 QRQYLEL 638 (948)
T ss_pred HHHHHHH
Confidence 7766654
No 98
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=53.92 E-value=5.3e+02 Score=32.09 Aligned_cols=75 Identities=28% Similarity=0.289 Sum_probs=39.3
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 158 VHLQQKIKQES--EQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALN-------QRQKMVLQRKTEEASMATKRLKELL 228 (560)
Q Consensus 158 VqLmkkMKEES--ekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~-------~kQ~~VLKRKtEEA~AA~KRLKe~L 228 (560)
.++++++=.++ .++.+.|...++|--.|++..-+...+-.+..+.+ ++..-+-.+-++|..+-+|||.+..
T Consensus 1065 ~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~ 1144 (1189)
T KOG1265|consen 1065 ISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQ 1144 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333 56666777777777767666544444322211111 1122233444567777778887777
Q ss_pred Hhhh
Q 008589 229 ESRK 232 (560)
Q Consensus 229 ekRK 232 (560)
++|.
T Consensus 1145 ~k~~ 1148 (1189)
T KOG1265|consen 1145 SKRQ 1148 (1189)
T ss_pred HHHH
Confidence 6554
No 99
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.75 E-value=78 Score=29.47 Aligned_cols=98 Identities=27% Similarity=0.407 Sum_probs=0.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCcchhhhHH
Q 008589 17 SDSNQDVDLLKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDE 96 (560)
Q Consensus 17 ~~~~q~~~l~k~yv~kIqeLe~El~~~k~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~l~e~~s~~~~~~~~~~~Ei~~~ 96 (560)
++..-.+.+|..+-+.|..||+|+..++.- .......-..+..||-.+
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~E~E~~~l~~e--------------------------------l~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRLEGELASLQEE--------------------------------LARLEAERDELREEIVKL 56 (120)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh-------------hhccccchHHHHHHHHHHHHHH
Q 008589 97 EKELEHSSLQEKLDRELKELDKKLEQKEAEM-------------KRFTGADTSVLKQHYEKKVLEL 149 (560)
Q Consensus 97 eKE~eh~~lQ~k~~KeLeEL~kRLqelE~em-------------k~~~q~kl~KlKe~~EkKLs~L 149 (560)
-++.+.. ....+++..|...|++++... -.-=+.++.-||+.|..+|..|
T Consensus 57 ~~~~e~~---~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 57 MEENEEL---RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
No 100
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.92 E-value=4.2e+02 Score=30.41 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 008589 108 KLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKIL 156 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~l 156 (560)
.+..++.++..+|++++.++...+ ..+..-++..+.++..++.++...
T Consensus 234 ~l~~ele~a~~~l~~l~~~~~~~G-G~~~~~r~~Le~ei~~le~e~~e~ 281 (650)
T TIGR03185 234 HLRNELEEAQRSLESLEKKFRSEG-GDLFEEREQLERQLKEIEAARKAN 281 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666554422 344555566666666666665443
No 101
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=51.12 E-value=5 Score=46.06 Aligned_cols=43 Identities=33% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 008589 182 VLQLKKEGRRNEYEMHKLLALNQR------QKMVLQRKTEEASMATKRL 224 (560)
Q Consensus 182 IaQLKKe~RK~e~Ei~kLea~~~k------Q~~VLKRKtEEA~AA~KRL 224 (560)
|..|.++.++...++..|...+.- |..-|++|.+-+-.+...|
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el 307 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEEL 307 (722)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777776665554 3344556655554443333
No 102
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=49.89 E-value=3.1e+02 Score=28.23 Aligned_cols=96 Identities=25% Similarity=0.419 Sum_probs=53.2
Q ss_pred hhhHHHHHHhhhh--hHHH----HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 92 EIEDEEKELEHSS--LQEK----LDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIK 165 (560)
Q Consensus 92 Ei~~~eKE~eh~~--lQ~k----~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMK 165 (560)
|.+..++|+-.++ ++++ +-++++..+-|.++++.-|+.. ..++..|+.+|.+-+++-.+-.|++-+-+.
T Consensus 100 E~~~~~~e~~e~l~km~EslRi~~~~e~~k~~~Re~~iak~m~K~-----pq~~a~~~a~~~k~e~~a~a~~~r~erli~ 174 (225)
T KOG4848|consen 100 EFNNAKKEYKELLKKMRESLRILYTKEPEKFTFREAEIAKNMKKY-----PQTLAKYEASLVKQEQEADAKEVRLERLIR 174 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Confidence 3334455555443 3333 2234455555555555444433 345667777777777777666787777777
Q ss_pred HHHHHHHHHH---HHhHHHHHHH-hHHhhhh
Q 008589 166 QESEQFRMWK---ASREKEVLQL-KKEGRRN 192 (560)
Q Consensus 166 EESekFR~wk---~~reKEIaQL-KKe~RK~ 192 (560)
+-.+-|=-|- ..|=.|++|- .++++|.
T Consensus 175 eiqe~fGy~vDprd~RF~emLqqkEkeekK~ 205 (225)
T KOG4848|consen 175 EIQEYFGYWVDPRDPRFEEMLQQKEKEEKKA 205 (225)
T ss_pred HHHHHhCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777777663 3344555443 3444443
No 103
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=48.99 E-value=4.5e+02 Score=29.88 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 194 YEMHKLLALNQRQKMVLQRKTEEASMATKRLKELL 228 (560)
Q Consensus 194 ~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~L 228 (560)
..+.+.+..-..++.-|..+.+++......+..+.
T Consensus 97 e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~ 131 (514)
T TIGR03319 97 ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELI 131 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444333333
No 104
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.90 E-value=96 Score=31.74 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008589 264 VRVHEVRSEYERQMEERARMANEVARLKEESEQAN 298 (560)
Q Consensus 264 vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n 298 (560)
..+.|.+.+.+.|+++|..+.++|.++.++...|+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE 66 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLE 66 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999888775
No 105
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=48.80 E-value=6.9e+02 Score=31.98 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHH
Q 008589 158 VHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQ 206 (560)
Q Consensus 158 VqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ 206 (560)
+.-|..++.|-.++..-.....+++..++++.-.++-++.+|.....-+
T Consensus 818 i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~ 866 (1294)
T KOG0962|consen 818 IRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNEL 866 (1294)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777666666777777777777777777777766655443
No 106
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=48.13 E-value=8 Score=31.22 Aligned_cols=39 Identities=28% Similarity=0.775 Sum_probs=31.1
Q ss_pred CccccCCC----ccccccccccccCCCCCCCCCCccCccccchhh
Q 008589 345 LCCTCSKS----SLCKTNKCQCRAAGGACKASCGCSSTKCSNREA 385 (560)
Q Consensus 345 ~cCsCsk~----S~CKt~kC~cra~g~~Cg~sCgC~~~KCsNR~~ 385 (560)
.-|.|... .-|. .-|-.|++-.-|...|.|. ..|+|+--
T Consensus 4 ~~C~C~~~~~~~~~Cg-sdClNR~l~~EC~~~C~~G-~~C~NqrF 46 (51)
T smart00570 4 MTCECKPTDDDEGACG-SDCLNRMLLIECSSDCPCG-SYCSNQRF 46 (51)
T ss_pred ceeeCccCCCCCCCcc-hHHHHHHHhhhcCCCCCCC-cCccCccc
Confidence 45777764 5787 7799999999999889987 78999853
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=48.08 E-value=3e+02 Score=27.50 Aligned_cols=50 Identities=30% Similarity=0.355 Sum_probs=31.0
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 180 KEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLE 229 (560)
Q Consensus 180 KEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~Le 229 (560)
.|.--|+.-..+++..|.+.+.....=-++|.+-.+|+-.++.+|+..-.
T Consensus 33 ~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 33 KENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666677777666666655443
No 108
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=46.99 E-value=6.5e+02 Score=32.30 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 196 MHKLLALNQRQKMVLQRKTEEASMATKRLKELLE 229 (560)
Q Consensus 196 i~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~Le 229 (560)
|.-|+..+..-++.|-+|..|.+-+++|+..+|.
T Consensus 1712 l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1712 LKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444444555566666666666666666666553
No 109
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=46.72 E-value=6e+02 Score=30.67 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHH
Q 008589 170 QFRMWKASREKEVLQLKKEGRRNEYEMHKLLA 201 (560)
Q Consensus 170 kFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea 201 (560)
.|+.--..-+++|...+.+..+.+.||-+|-.
T Consensus 545 e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~ 576 (775)
T PF10174_consen 545 ELRDRIQQLEQEVTRYREESEKAQAEVERLLD 576 (775)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443344455555666666666666655543
No 110
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.63 E-value=6.6e+02 Score=31.62 Aligned_cols=120 Identities=23% Similarity=0.229 Sum_probs=70.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHH-HHH
Q 008589 100 LEHSSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQ---VHLQQKIKQ--ESEQ-FRM 173 (560)
Q Consensus 100 ~eh~~lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lq---VqLmkkMKE--ESek-FR~ 173 (560)
.+...++..+.+++.|+..++..++-++.--.+.++..==+..++.+.+++.+++.++ -.+++.+.+ +.++ -.+
T Consensus 770 Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~ 849 (1141)
T KOG0018|consen 770 YEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKS 849 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444458888888889999998888887555555555555778889999999997776 112222222 2221 011
Q ss_pred HHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 174 WKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASM 219 (560)
Q Consensus 174 wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~A 219 (560)
.--..+.|+..-++..++.-.++.+|...--.-+.-+-|+..|--+
T Consensus 850 ~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~ 895 (1141)
T KOG0018|consen 850 KFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHN 895 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 1122344566666666666666666655544444444444444443
No 111
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.71 E-value=3.3e+02 Score=27.10 Aligned_cols=74 Identities=27% Similarity=0.360 Sum_probs=43.7
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 140 QHYEKKVLELE---QEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEE 216 (560)
Q Consensus 140 e~~EkKLs~Le---~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEE 216 (560)
+.+++.+.++. ..|-.=...||+.||++. +++|+...+.+..|..+.+.+.+-..-|+.-.+|
T Consensus 5 ~~He~af~~iK~YYndIT~~NL~lIksLKeei--------------~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e 70 (201)
T PF13851_consen 5 KNHEKAFQEIKNYYNDITLNNLELIKSLKEEI--------------AEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE 70 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444433 233333488999998875 4555555555555555666666666666666667
Q ss_pred HHHHHHHHHHH
Q 008589 217 ASMATKRLKEL 227 (560)
Q Consensus 217 A~AA~KRLKe~ 227 (560)
+..+.+.|+..
T Consensus 71 ~~eL~k~L~~y 81 (201)
T PF13851_consen 71 VEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHH
Confidence 77766666553
No 112
>PF14992 TMCO5: TMCO5 family
Probab=44.64 E-value=2.4e+02 Score=30.07 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 008589 28 NYVSKIQELEGELLRV 43 (560)
Q Consensus 28 ~yv~kIqeLe~El~~~ 43 (560)
++..|||+=|+..++|
T Consensus 22 ~lL~ki~~~E~~iq~L 37 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSL 37 (280)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666655555544
No 113
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.59 E-value=4.4e+02 Score=28.54 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 008589 28 NYVSKIQELEGELLRVKST 46 (560)
Q Consensus 28 ~yv~kIqeLe~El~~~k~~ 46 (560)
.|--+..-|..|+..|+..
T Consensus 45 ~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 45 TEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666777788888777766
No 114
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.43 E-value=4.4e+02 Score=28.93 Aligned_cols=49 Identities=24% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh-hhccccchHHHHHHHHHHHHHHHHHH
Q 008589 97 EKELEHSSLQEKLDRELKELDKKLEQKEAEM-KRFTGADTSVLKQHYEKKVLELEQEK 153 (560)
Q Consensus 97 eKE~eh~~lQ~k~~KeLeEL~kRLqelE~em-k~~~q~kl~KlKe~~EkKLs~Le~El 153 (560)
-.|.-|+...+-|. +.+|+++- + +..+.++-..+.+.||.|-++...|+
T Consensus 286 lReqTHtrhYElyR------r~kL~~Mg--f~dv~~~~~p~s~qet~eaKr~e~~~e~ 335 (406)
T KOG3859|consen 286 LREQTHTRHYELYR------RCKLEEMG--FKDVDPDNKPFSLQETYEAKRNEFLGEL 335 (406)
T ss_pred HhhhccccchHHHH------HHHHHHcC--CccCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 34555666666653 45664431 1 34455667888888988887776666
No 115
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.41 E-value=3.6e+02 Score=29.12 Aligned_cols=38 Identities=34% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 008589 175 KASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQR 212 (560)
Q Consensus 175 k~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKR 212 (560)
-..|||||.|+.+--.-...-++-|.++-.-|-.|+=|
T Consensus 213 ~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDR 250 (305)
T KOG0809|consen 213 VREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDR 250 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 45677888888776666666677777777777777655
No 116
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=44.25 E-value=5e+02 Score=29.06 Aligned_cols=138 Identities=23% Similarity=0.236 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 008589 153 KKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKE---LLE 229 (560)
Q Consensus 153 lK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe---~Le 229 (560)
|.+-+-+|.+||.=+.+.-++++..+.|=-+||..+..| -.+|..|--+ +.+.+.||- +.-++|. +|.
T Consensus 144 LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~R-Heqis~mLil-EcKka~~Ka-------aEegqKA~ei~Lk 214 (561)
T KOG1103|consen 144 LEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKR-HEQISLMLIL-ECKKALLKA-------AEEGQKAEEIMLK 214 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHH-------HHhhhhHHHHHHh
Confidence 334456777888877777777777777777788665433 3344443332 233344442 2222221 122
Q ss_pred hhhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHH
Q 008589 230 SRKASSRETSGSDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQAN--LRRVK 303 (560)
Q Consensus 230 kRKas~Rk~sgs~~g~~~~a~~lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n--i~dlk 303 (560)
..+.. +...++-...++...+-|..|.-|--.+.|+..+.+.|..++....+.-..|+++++-+. ++||.
T Consensus 215 lekdk----sr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 215 LEKDK----SRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred hccCc----cccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22211 122233233345666677777777777777777777777777777777777777777664 55553
No 117
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=44.20 E-value=8 Score=43.87 Aligned_cols=44 Identities=34% Similarity=0.964 Sum_probs=37.2
Q ss_pred ccCCCCccccCCCccccccccccccCCCCCCC-----CCCccCccccchhh
Q 008589 340 NAKSGLCCTCSKSSLCKTNKCQCRAAGGACKA-----SCGCSSTKCSNREA 385 (560)
Q Consensus 340 ~s~~~~cCsCsk~S~CKt~kC~cra~g~~Cg~-----sCgC~~~KCsNR~~ 385 (560)
+|+..+.|+|- -.|-.--|.|--+|..|-- -|||..--|.|-+.
T Consensus 303 nSReeCGCsCr--~~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp~G 351 (640)
T KOG3813|consen 303 NSREECGCSCR--GVCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNPEG 351 (640)
T ss_pred hhHHhhCCccc--ceeChhhcchhccCceEeecCcccccccchhhcCCCcc
Confidence 44577888887 8899999999999999953 29999999999763
No 118
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.10 E-value=7.1e+02 Score=30.78 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 008589 113 LKELDKKLEQKEAEM 127 (560)
Q Consensus 113 LeEL~kRLqelE~em 127 (560)
|+-+.+.|.+++.++
T Consensus 261 lq~sak~ieE~m~ql 275 (1265)
T KOG0976|consen 261 LQASAKEIEEKMRQL 275 (1265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 119
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.10 E-value=3.3e+02 Score=26.87 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008589 139 KQHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 139 Ke~~EkKLs~Le~ElK~lq 157 (560)
+..++.+|..|+.++..|+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~ 140 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELE 140 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554
No 120
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.75 E-value=11 Score=43.39 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008589 207 KMVLQRKTEEASMATKRLKELLE 229 (560)
Q Consensus 207 ~~VLKRKtEEA~AA~KRLKe~Le 229 (560)
-..+|.|.+++....+|++.+-+
T Consensus 317 ve~YKkKLed~~~lk~qvk~Lee 339 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQVKELEE 339 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999988888766554
No 121
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=43.75 E-value=16 Score=38.85 Aligned_cols=20 Identities=35% Similarity=0.898 Sum_probs=16.7
Q ss_pred CCCCCCCCCCccCccccchhh
Q 008589 365 AGGACKASCGCSSTKCSNREA 385 (560)
Q Consensus 365 ~g~~Cg~sCgC~~~KCsNR~~ 385 (560)
.+--|+++||| ...|+||..
T Consensus 151 ~i~EC~~~C~C-~~~C~nRv~ 170 (364)
T KOG1082|consen 151 PVFECSVACGC-HPDCANRVV 170 (364)
T ss_pred cccccccCCCC-CCcCcchhh
Confidence 34469999999 778999996
No 122
>PRK01156 chromosome segregation protein; Provisional
Probab=43.40 E-value=6.2e+02 Score=29.92 Aligned_cols=31 Identities=6% Similarity=0.177 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008589 265 RVHEVRSEYERQMEERARMANEVARLKEESE 295 (560)
Q Consensus 265 sv~Eae~~LErLmeeRa~La~EL~~Lk~e~e 295 (560)
.+.+++..++.+......+..++..++++++
T Consensus 689 ~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~ 719 (895)
T PRK01156 689 ALDDAKANRARLESTIEILRTRINELSDRIN 719 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444455555555555555555444554443
No 123
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.39 E-value=1.1e+02 Score=34.81 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 113 LKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHL 160 (560)
Q Consensus 113 LeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqL 160 (560)
+.||.++|..+..++. .+.+..++++.+|.+|+.|++.|+-++
T Consensus 78 asELEKqLaaLrqElq-----~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELD-----VLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHH-----HHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5666666666644432 234567788999999999998887665
No 124
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.18 E-value=5.5e+02 Score=30.63 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=16.5
Q ss_pred cchhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008589 89 ISDEIEDEEKELEHSSLQEKLDRELKELDKKLEQKEAE 126 (560)
Q Consensus 89 ~~~Ei~~~eKE~eh~~lQ~k~~KeLeEL~kRLqelE~e 126 (560)
+..+|=+.++++-. .....+++.++.|.....++|.+
T Consensus 494 lp~~ii~~A~~~~~-~~~~~~~~li~~L~~~~~~~e~~ 530 (771)
T TIGR01069 494 IPHFIIEQAKTFYG-EFKEEINVLIEKLSALEKELEQK 530 (771)
T ss_pred cCHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455444554422 23334555555555544444433
No 125
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=43.09 E-value=5.3e+02 Score=28.99 Aligned_cols=200 Identities=22% Similarity=0.259 Sum_probs=0.0
Q ss_pred ccccccCCChhhhhccccchhhHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcCCCCCCCCCccccCCCCCccccccccc
Q 008589 3 IESARNGKSWDEIESDSNQDVDLLKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADC 82 (560)
Q Consensus 3 ies~rngks~d~i~~~~~q~~~l~k~yv~kIqeLe~El~~~k~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~l~e~~s~~ 82 (560)
|..+..|.. +.+.+-.++...+.+|+.|..+|..|+..
T Consensus 236 ~~~~~~~~~------~~~~~~~~i~~a~~~i~~L~~~l~~l~~~------------------------------------ 273 (582)
T PF09731_consen 236 IESINEGNL------SESDLNSLIAHAKERIDALQKELAELKEE------------------------------------ 273 (582)
T ss_pred hhhhccccc------cccccHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Q ss_pred cccccCcchhhhHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 83 DSKVEDISDEIEDEEKELEHSSLQEKLDRELKELDKKLE-QKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQ 161 (560)
Q Consensus 83 ~~~~~~~~~Ei~~~eKE~eh~~lQ~k~~KeLeEL~kRLq-elE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLm 161 (560)
+.+.-+..|..+....+..+..++. .++ .++.+..+.-..+++.++..++-..-
T Consensus 274 --------------~~~~l~~~L~~q~~e~~~~~~~~~~~~le-----------~~~~~~~~~~~~e~~~~~~~l~~~~~ 328 (582)
T PF09731_consen 274 --------------EEEELERALEEQREELLSKLREELEQELE-----------EKRAELEEELREEFEREREELEEKYE 328 (582)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 008589 162 QKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETSGS 241 (560)
Q Consensus 162 kkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs 241 (560)
.+|+.+.++-...-..+-+++.........+++...--+...+-+...|.. ++++..-.+.|..++..+...-+..
T Consensus 329 ~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~-l~~~~~~~~~le~~~~~~~~~~~~~--- 404 (582)
T PF09731_consen 329 EELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAK-LAELNSRLKALEEALDARSEAEDEN--- 404 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 008589 242 DSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEER-----ARMANEVARLKE 292 (560)
Q Consensus 242 ~~g~~~~a~~lq~WL~~ELEv~vsv~Eae~~LErLmeeR-----a~La~EL~~Lk~ 292 (560)
.....+.-+-..|...+..- .-+..+|..|+.
T Consensus 405 -------------------~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~ 441 (582)
T PF09731_consen 405 -------------------RRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKE 441 (582)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHH
No 126
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=42.75 E-value=2.8e+02 Score=26.29 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008589 141 HYEKKVLELEQEKKILQVH 159 (560)
Q Consensus 141 ~~EkKLs~Le~ElK~lqVq 159 (560)
.|...+..++.|+..|.-+
T Consensus 24 ~l~~~i~~~d~el~QLefq 42 (131)
T PF11068_consen 24 ELQEQIQQLDQELQQLEFQ 42 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 127
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.16 E-value=3.1e+02 Score=26.11 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHh-hhccccchHHHH---HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHH
Q 008589 111 RELKELDKKLEQKEAEM-KRFTGADTSVLK---QHYEKKVLELEQEKKILQ------VHLQQKIKQESEQFRMWKASREK 180 (560)
Q Consensus 111 KeLeEL~kRLqelE~em-k~~~q~kl~KlK---e~~EkKLs~Le~ElK~lq------VqLmkkMKEESekFR~wk~~reK 180 (560)
-.+..+..+|.++| ++ .....-++..|+ +.|..+|.+=+.||..|+ |+.+-..|+-..-...--..-..
T Consensus 20 ~~l~k~~~ql~~ke-~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~ 98 (177)
T PF13870_consen 20 HQLAKLEEQLRQKE-ELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQ 98 (177)
T ss_pred HHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777776 33 222334455555 668999999999998887 56666666555433333333333
Q ss_pred HHHHH
Q 008589 181 EVLQL 185 (560)
Q Consensus 181 EIaQL 185 (560)
+|...
T Consensus 99 ~l~~~ 103 (177)
T PF13870_consen 99 ELKDR 103 (177)
T ss_pred HHHHH
Confidence 33333
No 128
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.97 E-value=6.3e+02 Score=29.56 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 008589 106 QEKLDRELKELDKKLEQKEAEMKRF 130 (560)
Q Consensus 106 Q~k~~KeLeEL~kRLqelE~emk~~ 130 (560)
.+-++++|.+++.+|.+.|.++..+
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788999999999998887444
No 129
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.89 E-value=3.1e+02 Score=25.96 Aligned_cols=49 Identities=31% Similarity=0.377 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh----ccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKR----FTGADTSVLKQHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~----~~q~kl~KlKe~~EkKLs~Le~ElK~lq 157 (560)
+..++.++...+..++.++.. .+.+++...-...+.++..|+..|..++
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666533 2445566666777777777777777776
No 130
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.99 E-value=9.3e+02 Score=31.24 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 008589 250 KALMQAIEH 258 (560)
Q Consensus 250 ~~lq~WL~~ 258 (560)
..+..|+.+
T Consensus 438 EeLe~~Len 446 (1486)
T PRK04863 438 DNAEDWLEE 446 (1486)
T ss_pred HHHHHHHHH
Confidence 445566643
No 131
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.85 E-value=4.7e+02 Score=27.76 Aligned_cols=15 Identities=60% Similarity=0.760 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 008589 112 ELKELDKKLEQKEAE 126 (560)
Q Consensus 112 eLeEL~kRLqelE~e 126 (560)
.++++++++.+.+.+
T Consensus 10 l~~~l~~~~~~~~~E 24 (314)
T PF04111_consen 10 LLEQLDKQLEQAEKE 24 (314)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 132
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=40.70 E-value=3e+02 Score=29.17 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhH
Q 008589 108 KLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKK 187 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKK 187 (560)
.|.++.+|+++-+++..+++......++. -.+++.++.++.+++-.+.+=-..++.+-..- .-+..+..|++
T Consensus 145 ~~~~~~~ekd~~i~~~~~~~e~d~rnq~l------~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~--e~~~r~~~lr~ 216 (264)
T PF07246_consen 145 ELKKEAEEKDQLIKEKTQERENDRRNQIL------SHEISNLTNELSNLRNDIDKFQEREDEKILHE--ELEARESGLRN 216 (264)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhhHHHHH------HHHHHHhhhhHHHhhchhhhhhhhhhHHHHHH--HHHHhHhhhHH
Confidence 45555566666666544333331111122 23355555555555432111111111111111 12333445666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 188 EGRRNEYEMHKLLALNQRQKMVLQRKTE 215 (560)
Q Consensus 188 e~RK~e~Ei~kLea~~~kQ~~VLKRKtE 215 (560)
+.+....++..++....++.....+.+.
T Consensus 217 ~~~~l~~el~~aK~~~~~~~~~~~~~~s 244 (264)
T PF07246_consen 217 ESKWLEHELSDAKEDMIRLRNDISDFTS 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 6666666666666555555555554433
No 133
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=39.82 E-value=7.5e+02 Score=29.80 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 265 RVHEVRSEYERQMEERARMANEVARLKEESEQA 297 (560)
Q Consensus 265 sv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~ 297 (560)
.+.+++..|+.+-..|.....+|+....++|++
T Consensus 170 k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L 202 (739)
T PF07111_consen 170 KAEELEKSLESLETRRAGEAKELAEAQREADLL 202 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555556666655555555
No 134
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.26 E-value=4.2e+02 Score=27.44 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHH
Q 008589 159 HLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQR 205 (560)
Q Consensus 159 qLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~k 205 (560)
.|+.=+..+-.+||+=-.+-|.|+.++..+--..+.||.+|++.+-+
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~k 125 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVK 125 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777778899888888888888888888888888888877654
No 135
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.78 E-value=2.2e+02 Score=28.05 Aligned_cols=19 Identities=42% Similarity=0.793 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008589 109 LDRELKELDKKLEQKEAEM 127 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~em 127 (560)
+.++++.+..++.+++.++
T Consensus 74 l~~~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 74 LQKEIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 136
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=36.82 E-value=2.8e+02 Score=23.92 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 108 KLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQF 171 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekF 171 (560)
.+..++..+...++.+-..........+..+++.....+..+...++...-++..++++-.+..
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 65 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQT 65 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777766666666778888888888888888887777655555555544433
No 137
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=36.66 E-value=8.5e+02 Score=29.53 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 208 MVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNII--FYEKALMQAIEHELEVTVRVHEVRSEYERQMEE 279 (560)
Q Consensus 208 ~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs~~g~~--~~a~~lq~WL~~ELEv~vsv~Eae~~LErLmee 279 (560)
+-.+.|+|+|... --||+..+.=+.--.+. |+.+... ..-.++.+-|.+-|--.+...++...+|.|..+
T Consensus 656 ~eIkkkIe~av~s-s~LK~k~E~Lk~Evaka-~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e 727 (762)
T PLN03229 656 EEINKKIERVIRS-SDLKSKIELLKLEVAKA-SKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAE 727 (762)
T ss_pred HHHHHHHHHHhcc-hhHHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 3456677777763 22555444322111121 3333221 111455555555555566666666666665555
No 138
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=36.33 E-value=6e+02 Score=27.71 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccc-h--HHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 105 LQEKLDRELKELDKKLEQKEAEMKRFTGAD-T--SVLKQHYEKKVLELEQEKKILQVH 159 (560)
Q Consensus 105 lQ~k~~KeLeEL~kRLqelE~emk~~~q~k-l--~KlKe~~EkKLs~Le~ElK~lqVq 159 (560)
..+-+++++.+++.+|.+.|.++..+.... + ..........|..+++++...+.+
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 219 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLE 219 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 556688899999999999998875542111 1 111223445566666666555433
No 139
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=36.30 E-value=7.1e+02 Score=28.51 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=9.8
Q ss_pred HHHhhHHHHHHhhhc
Q 008589 416 LVTHGAMLLQNALIE 430 (560)
Q Consensus 416 ~~~~ga~Llq~a~~~ 430 (560)
.+.-||-+|.+...+
T Consensus 443 ~~~~~a~~l~al~~e 457 (552)
T KOG2129|consen 443 FAVLEAIRLEALRTE 457 (552)
T ss_pred Hhhhhhhhhhhhccc
Confidence 345677777776665
No 140
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=36.09 E-value=1.2e+02 Score=26.19 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc--cchHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTG--ADTSVLKQHYEKKVLE 148 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q--~kl~KlKe~~EkKLs~ 148 (560)
+.++.++|..+|...+.++..... ..+..++..|++.|..
T Consensus 8 l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~ 49 (69)
T PF08912_consen 8 LAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNT 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655533322 2377888888888654
No 141
>PRK01156 chromosome segregation protein; Provisional
Probab=36.02 E-value=8e+02 Score=29.05 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 008589 142 YEKKVLELEQEKKIL 156 (560)
Q Consensus 142 ~EkKLs~Le~ElK~l 156 (560)
++.++..++.+++.+
T Consensus 254 ~e~~i~ele~~l~el 268 (895)
T PRK01156 254 YESEIKTAESDLSME 268 (895)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555544433
No 142
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.44 E-value=3e+02 Score=24.78 Aligned_cols=52 Identities=37% Similarity=0.506 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----hhccccchHHHH----HHHHHHHHHHHHHHHHHH
Q 008589 106 QEKLDRELKELDKKLEQKEAEM----KRFTGADTSVLK----QHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 106 Q~k~~KeLeEL~kRLqelE~em----k~~~q~kl~KlK----e~~EkKLs~Le~ElK~lq 157 (560)
+.++...-.+...+++.+-.++ +..-..++..|| .+|+++|..|+.+++.+.
T Consensus 3 ~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~ 62 (87)
T PF12709_consen 3 KKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALK 62 (87)
T ss_pred HhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554 222334577888 556777777777776664
No 143
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.10 E-value=8.6e+02 Score=29.12 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=4.7
Q ss_pred hhhhcccc
Q 008589 13 DEIESDSN 20 (560)
Q Consensus 13 d~i~~~~~ 20 (560)
||+-++++
T Consensus 414 DE~~~GtD 421 (782)
T PRK00409 414 DELGAGTD 421 (782)
T ss_pred cCCCCCCC
Confidence 56666555
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.01 E-value=7.5e+02 Score=28.41 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 197 HKLLALNQRQKMVLQRKTEEASMATKRLKEL 227 (560)
Q Consensus 197 ~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~ 227 (560)
.+++-+.++++..++-+-+...-+.-.|+++
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444555555555555555555555554
No 145
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.98 E-value=3.6e+02 Score=24.77 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 252 LMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARL 290 (560)
Q Consensus 252 lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~L 290 (560)
-..|...+-.+--.+.+++..++.|..+-..|-.+|..|
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 447988888888888999999999999988888887654
No 146
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=34.96 E-value=3.5e+02 Score=31.22 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=46.6
Q ss_pred hhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 92 EIEDEEKELEHSS-LQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQK 163 (560)
Q Consensus 92 Ei~~~eKE~eh~~-lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkk 163 (560)
|-..+.+-++++. ..+.++-+|++...+++.|+.| +...+..||.+|+.|..-|=.|.-+|.+|
T Consensus 442 Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE--------L~TTr~NYE~QLs~MSEHLasmNeqL~~Q 506 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKESLEEELKEANQNISRLQDE--------LETTRRNYEEQLSMMSEHLASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555532 3445667888888888888855 45567889999999999998888888765
No 147
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.52 E-value=7.7e+02 Score=28.40 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=21.4
Q ss_pred ChhhhhccccchhhHHHHHHHHHHHHHHHHh
Q 008589 11 SWDEIESDSNQDVDLLKNYVSKIQELEGELL 41 (560)
Q Consensus 11 s~d~i~~~~~q~~~l~k~yv~kIqeLe~El~ 41 (560)
.|.+|+.+-+|.-+|=+..---||.-++=|.
T Consensus 151 gFr~~ed~r~q~q~ld~q~pehfqq~~~~l~ 181 (521)
T KOG1937|consen 151 GFRDIEDNRNQEQKLDNQTPEHFQQCNAVLN 181 (521)
T ss_pred ccCcchhhHHHHHhhhhccHHHHHHHHHHhc
Confidence 3777776667777777777777777776553
No 148
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=33.90 E-value=14 Score=43.90 Aligned_cols=101 Identities=21% Similarity=0.343 Sum_probs=0.0
Q ss_pred ccccccCcchhhhHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 82 CDSKVEDISDEIEDEEKELEH-SSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHL 160 (560)
Q Consensus 82 ~~~~~~~~~~Ei~~~eKE~eh-~~lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqL 160 (560)
++...+--+.||..+...++. ......+.|.+.+|.-+|++|+.++..- +..+.+.++.-.+|..||-.|+-+|
T Consensus 9 l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~E-----r~~R~kaek~r~dL~~ELe~l~~~L 83 (859)
T PF01576_consen 9 LEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESE-----RQARAKAEKQRRDLSEELEELKERL 83 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444566666555555 5566778888999999999998765322 2345566666677777777776555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 008589 161 QQKIKQESEQFRMWKASREKEVLQLKKE 188 (560)
Q Consensus 161 mkkMKEESekFR~wk~~reKEIaQLKKe 188 (560)
--..-..+ .-......|+.|++.||++
T Consensus 84 ee~~~~t~-aq~E~~kkrE~El~~Lrr~ 110 (859)
T PF01576_consen 84 EEAGGATQ-AQIELNKKREAELAKLRRD 110 (859)
T ss_dssp ----------------------------
T ss_pred HHhhCcHH-hhHHHHHHHHHHHHHHHHH
Confidence 33333222 2223445566666666654
No 149
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.76 E-value=68 Score=31.56 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008589 266 VHEVRSEYERQMEERARMANEV 287 (560)
Q Consensus 266 v~Eae~~LErLmeeRa~La~EL 287 (560)
+.+++..|.+-||.-+.|..||
T Consensus 2 LeD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4555556666665555555555
No 150
>PRK12705 hypothetical protein; Provisional
Probab=33.41 E-value=7.9e+02 Score=28.21 Aligned_cols=99 Identities=18% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHh
Q 008589 110 DRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEG 189 (560)
Q Consensus 110 ~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~ 189 (560)
.+.+++-.+.-+.+..+..+.....+.+++.+.+..+.....++....-+|.++-.. ..+-...=..+++++.+..++-
T Consensus 36 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~-l~~~~~~l~~~~~~l~~~~~~l 114 (508)
T PRK12705 36 ERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQ-LDARAEKLDNLENQLEEREKAL 114 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 008589 190 RRNEYEMHKLLALNQRQKMVLQR 212 (560)
Q Consensus 190 RK~e~Ei~kLea~~~kQ~~VLKR 212 (560)
..+..++..+ .+.|...|.+
T Consensus 115 ~~~~~~~~~~---~~~~~~~Le~ 134 (508)
T PRK12705 115 SARELELEEL---EKQLDNELYR 134 (508)
T ss_pred HHHHHHHHHH---HHHHHHHHHH
No 151
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.84 E-value=8.7e+02 Score=28.53 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=88.4
Q ss_pred cccccCcchhhhHH--HHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHhhhccc------cchHHHHHHHHHHHHHHHH
Q 008589 83 DSKVEDISDEIEDE--EKELEHSSLQEKL---DRELKELDKKLEQKEAEMKRFTG------ADTSVLKQHYEKKVLELEQ 151 (560)
Q Consensus 83 ~~~~~~~~~Ei~~~--eKE~eh~~lQ~k~---~KeLeEL~kRLqelE~emk~~~q------~kl~KlKe~~EkKLs~Le~ 151 (560)
.+-...+-++|... +.+.+-.-||+.. .-..+|+...|..++.++..... ........+....+..|+.
T Consensus 420 ~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~ 499 (581)
T KOG0995|consen 420 KPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEE 499 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455432 3334444466553 33667777777777766533211 1122233445666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 152 EKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASM 219 (560)
Q Consensus 152 ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~A 219 (560)
++..++.-|-.+|++..+.-......-++=+...-.+-++...++..+-.+--.+..+.+-.+|+-.|
T Consensus 500 ~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~ 567 (581)
T KOG0995|consen 500 ELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKA 567 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999988888887777777777777777777777777777777777777777777665
No 152
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=32.66 E-value=2.6e+02 Score=29.18 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHHHH-hhhhhccCCCCCCCcCCCCCCCC----CccccCCCCCccccccccccccccCcchhhhHHH
Q 008589 23 VDLLKNYVSKIQELEGEL-LRVKSTHNSKRSRNADSVDTDDD----GFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEE 97 (560)
Q Consensus 23 ~~l~k~yv~kIqeLe~El-~~~k~~~~~~~~~~~~~~~~d~~----g~~~~~~~~~~l~e~~s~~~~~~~~~~~Ei~~~e 97 (560)
++.||.|+..-.-...|+ -.|-+.+.- +...+..++ +++| -...+.+++. ..+..++.++..++
T Consensus 21 lE~mk~~m~~raK~d~eya~~L~~~~~q-----~~k~~~~~~~~~~~~~s--~i~~sW~~il----~QTE~isk~~~~~A 89 (237)
T cd07685 21 MEVMKKWMSQRAKSDREYSGMLHHMSAQ-----VEKLDRSQHGALSMLSS--PISQSWAVLV----SQTETLSQVLRKHA 89 (237)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh-----hccccccchhhhcccCC--hHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 456899998888888887 344444111 000111111 2222 1111122222 22223334444445
Q ss_pred HHHhhhhh-H-HHHHHHHHH----HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Q 008589 98 KELEHSSL-Q-EKLDRELKE----LDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEK 153 (560)
Q Consensus 98 KE~eh~~l-Q-~k~~KeLeE----L~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~El 153 (560)
.+++--.+ + ..|.+.-+. .....+.+..+|.....+++.|+|.+|..-+..++.-.
T Consensus 90 eeln~~~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eveK~Kk~Y~~~c~~~e~AR 151 (237)
T cd07685 90 EDLNAGPLSKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEKLKSQYRSLAKDSAQAK 151 (237)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443211 1 112222333 33345555556655555667777777777666665443
No 153
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.23 E-value=9.7e+02 Score=28.85 Aligned_cols=135 Identities=13% Similarity=0.081 Sum_probs=80.5
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Q 008589 92 EIEDEEKELEHSSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQ-----------VHL 160 (560)
Q Consensus 92 Ei~~~eKE~eh~~lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lq-----------VqL 160 (560)
.+.+++.+++.+.++.+|.-+..+..+.+-.+-.. +......-+.|.+++.....+.+... +.+
T Consensus 79 kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~-----q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ 153 (716)
T KOG4593|consen 79 KRAELELTKAQSILARNYEAEVDRKHKLLTRLRQL-----QEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKL 153 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888877555444433332110 02222333333333333333333222 222
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 161 QQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRK 232 (560)
Q Consensus 161 mkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRK 232 (560)
-.|.+--.+|-.--+..+.++.=++-+-+.....+.+++....+|..-|+-..-...++.-+|.+....+.
T Consensus 154 -ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~q 224 (716)
T KOG4593|consen 154 -AELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQ 224 (716)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444445666666666777777777777778888888888888888888877777777666666555444
No 154
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.06 E-value=4.5e+02 Score=24.96 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008589 111 RELKELDKKLEQKEAEM 127 (560)
Q Consensus 111 KeLeEL~kRLqelE~em 127 (560)
+++.+++.++.+++.++
T Consensus 95 ~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 95 EELDQLQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555543
No 155
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.99 E-value=3.4e+02 Score=26.88 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 206 QKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIEHELEVTVRVHEVRSEYERQMEERARMAN 285 (560)
Q Consensus 206 Q~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs~~g~~~~a~~lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~ 285 (560)
=..+++..++++..+-|..+.. . ++ . + ...+...+..+|..--...-....++.+.+.|..+-+.|..
T Consensus 51 WNs~VRkqY~~~i~~AKkqRk~------~--~~-~--~-~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~ 118 (161)
T TIGR02894 51 WNAYVRKQYEEAIELAKKQRKE------L--KR-E--A-GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQK 118 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------c--cc-C--c-ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777776654433321 1 11 0 1 11234666666644444334455566667777777777777
Q ss_pred HHHHHHHHHhhh--hhHHHHHHhhhccCCC
Q 008589 286 EVARLKEESEQA--NLRRVKKRISKNGNRA 313 (560)
Q Consensus 286 EL~~Lk~e~e~~--ni~dlke~~s~~~~~~ 313 (560)
++..|+.+++.+ .+.-++|.|..++..+
T Consensus 119 ~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 119 RNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766 3666666666555433
No 156
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.77 E-value=4.5e+02 Score=24.84 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 008589 26 LKNYVSKIQELEGELLRVKST 46 (560)
Q Consensus 26 ~k~yv~kIqeLe~El~~~k~~ 46 (560)
+..|+..++.||.+|.-.+..
T Consensus 22 l~~~~~qk~~le~qL~E~~~a 42 (119)
T COG1382 22 LQKVILQKQQLEAQLKEIEKA 42 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345777788888888665544
No 157
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=31.58 E-value=4.2e+02 Score=30.07 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=22.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008589 97 EKELEHSSLQEKLDRELKELDKKLEQKEAE 126 (560)
Q Consensus 97 eKE~eh~~lQ~k~~KeLeEL~kRLqelE~e 126 (560)
.-..+|.+-++.++-.+..+++.+..++.+
T Consensus 129 qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e 158 (447)
T KOG2751|consen 129 QTQVDHPLCEECMDVLLNKLDKEVEDAEDE 158 (447)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788888888888888777766
No 158
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=31.54 E-value=1.2e+03 Score=29.87 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 008589 250 KALMQAIEHELEVT 263 (560)
Q Consensus 250 ~~lq~WL~~ELEv~ 263 (560)
..++..|++|+...
T Consensus 759 l~Lq~~LEqe~~~r 772 (1317)
T KOG0612|consen 759 LKLQSMLEQEISKR 772 (1317)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444444
No 159
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.42 E-value=6.2e+02 Score=26.39 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=9.5
Q ss_pred HHHHHHHhHHHHHHHhHHhhhhHH
Q 008589 171 FRMWKASREKEVLQLKKEGRRNEY 194 (560)
Q Consensus 171 FR~wk~~reKEIaQLKKe~RK~e~ 194 (560)
|......-+-+|..++++--+.++
T Consensus 57 le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 57 LENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333333
No 160
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.40 E-value=8.5e+02 Score=27.93 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008589 252 LMQAIEHELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQAN 298 (560)
Q Consensus 252 lq~WL~~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n 298 (560)
++++...|..+.-....+++.|-.-|+.|++||+.|..-+-.++|..
T Consensus 280 ~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemde 326 (552)
T KOG2129|consen 280 LMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDE 326 (552)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34444444444444444555555555555555555554444444443
No 161
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.20 E-value=2.2e+02 Score=25.57 Aligned_cols=48 Identities=23% Similarity=0.357 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-cccchHHHHH---HHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRF-TGADTSVLKQ---HYEKKVLELEQEKKIL 156 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~-~q~kl~KlKe---~~EkKLs~Le~ElK~l 156 (560)
+...+...+.||+.+|.++.-. +..++-.|+- +.+-.+..|+..++.+
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3345666799999999998655 5556666663 3344455555555444
No 162
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=31.02 E-value=2.4e+02 Score=27.58 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008589 158 VHLQQKIKQESEQFRMWKAS 177 (560)
Q Consensus 158 VqLmkkMKEESekFR~wk~~ 177 (560)
+.|..++|+|.++|..++..
T Consensus 108 ~~L~~KLkeEq~kv~~ME~~ 127 (152)
T PF11500_consen 108 MRLAEKLKEEQEKVAEMERH 127 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777665543
No 163
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.99 E-value=3.5e+02 Score=31.11 Aligned_cols=8 Identities=38% Similarity=0.443 Sum_probs=4.4
Q ss_pred HHHHHHHH
Q 008589 221 TKRLKELL 228 (560)
Q Consensus 221 ~KRLKe~L 228 (560)
-+||++..
T Consensus 264 ~~~L~~~~ 271 (555)
T TIGR03545 264 LKRLENKY 271 (555)
T ss_pred HHHHHHHh
Confidence 44566555
No 164
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.77 E-value=4.7e+02 Score=24.81 Aligned_cols=7 Identities=29% Similarity=0.487 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008589 117 DKKLEQK 123 (560)
Q Consensus 117 ~kRLqel 123 (560)
..+|.++
T Consensus 87 ~~~l~~l 93 (191)
T PF04156_consen 87 QQQLQQL 93 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 165
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.73 E-value=3.4e+02 Score=29.91 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHH
Q 008589 158 VHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALN---QRQKMVLQRKTEE 216 (560)
Q Consensus 158 VqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~---~kQ~~VLKRKtEE 216 (560)
++|+.++++|.++.......-.|-=.-|+.-..+.+.++..|+.++ +++--||++|.+|
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444444444444433333222222223333333333333443333 3456799999999
No 166
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=30.67 E-value=6.2e+02 Score=26.18 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 008589 158 VHLQQKIKQESE 169 (560)
Q Consensus 158 VqLmkkMKEESe 169 (560)
.+|..+|..+..
T Consensus 246 ~~L~ekme~e~~ 257 (297)
T PF02841_consen 246 KQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445666666655
No 167
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.07 E-value=6.1e+02 Score=25.84 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHH-hhhhhcc
Q 008589 25 LLKNYVSKIQELEGEL-LRVKSTH 47 (560)
Q Consensus 25 l~k~yv~kIqeLe~El-~~~k~~~ 47 (560)
-|-.|+..=..+|.+| ..|.-++
T Consensus 23 el~~fl~ERa~IEe~Yak~L~kla 46 (233)
T cd07649 23 EMAEFIRERIKIEEEYAKNLSKLS 46 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555567788888 7777663
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=29.67 E-value=9.1e+02 Score=27.76 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=38.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHH
Q 008589 131 TGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQ----FRMWKASREKEVLQLKKEGRRNEYEMHKLLAL 202 (560)
Q Consensus 131 ~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESek----FR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~ 202 (560)
.+.++.+.+.-.|+++..++.-+++.+-+|+-. +|+... -..|...-++...+++..-+-.+.+|.-|+.|
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~-~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKELKEE-REENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQ 443 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777776665444322 233322 23455555555555555555555555555544
No 169
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=29.60 E-value=6.5e+02 Score=26.05 Aligned_cols=18 Identities=28% Similarity=0.566 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAE 126 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~e 126 (560)
+...+...++.|.+.|.+
T Consensus 188 ~~~~ilq~d~~L~~~ek~ 205 (297)
T PF02841_consen 188 MENSILQADQQLTEKEKE 205 (297)
T ss_dssp HHHHHHHH-TTS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455555555444
No 170
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.37 E-value=9.7e+02 Score=27.99 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHh------hhhhHHHHH
Q 008589 254 QAIEHELEVTVRVHEVRSEYE-----------------------RQMEERARMANEVARLKEESE------QANLRRVKK 304 (560)
Q Consensus 254 ~WL~~ELEv~vsv~Eae~~LE-----------------------rLmeeRa~La~EL~~Lk~e~e------~~ni~dlke 304 (560)
.|+..|+|-++.+..-+..|+ .++--|++|+++|..|+.-.. .+.|..|.+
T Consensus 417 dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~Ala~Di~~L~~~~~~D~~gl~l~L~~l~~ 496 (656)
T PRK06975 417 DWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKAIAQDIERLKAAPSADLTGLAIKLDDAIA 496 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHH
Confidence 677777777766655555544 467789999999998876222 123666666
Q ss_pred Hhhhcc
Q 008589 305 RISKNG 310 (560)
Q Consensus 305 ~~s~~~ 310 (560)
++.++.
T Consensus 497 ~vd~Lp 502 (656)
T PRK06975 497 KIDALP 502 (656)
T ss_pred HHhhCc
Confidence 555554
No 171
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.18 E-value=6.1e+02 Score=25.59 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 008589 114 KELDKKLEQKE 124 (560)
Q Consensus 114 eEL~kRLqelE 124 (560)
.++.++|+++.
T Consensus 96 p~le~el~~l~ 106 (206)
T PRK10884 96 PDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 172
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=29.09 E-value=21 Score=39.47 Aligned_cols=35 Identities=40% Similarity=1.008 Sum_probs=30.8
Q ss_pred CccccCCCccccccccccccCCCCCCCCCCccCccccc
Q 008589 345 LCCTCSKSSLCKTNKCQCRAAGGACKASCGCSSTKCSN 382 (560)
Q Consensus 345 ~cCsCsk~S~CKt~kC~cra~g~~Cg~sCgC~~~KCsN 382 (560)
-.|-| |+|-|.-.+|+|=-+|..|+..|-|. .|-|
T Consensus 218 kGC~C-kkSgClKkYCECyQa~vlCS~nCkC~--~CkN 252 (406)
T KOG1171|consen 218 KGCNC-KKSGCLKKYCECYQAGVLCSSNCKCQ--GCKN 252 (406)
T ss_pred CCCCC-ccccchHHHHHHHhcCCCccccccCc--CCcc
Confidence 45777 56889999999999999999999997 5888
No 173
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.09 E-value=8.8e+02 Score=28.82 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKE 188 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe 188 (560)
+.+.+..+...++.++.+...+ ...=+++.+.|..|+.++..++ +.++.+.-+-|. -..++++|..|+++
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L-----~~~~ee~k~eie~L~~~l~~~~----r~~~~~~~~~re-i~~~~~~I~~L~~~ 489 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSEL-----KRELEELKREIEKLESELERFR----REVRDKVRKDRE-IRARDRRIERLEKE 489 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHH-HHHHHHHHHHHHHH
Confidence 5566666666666666553221 1112333344444444443332 112211111111 12245556666665
Q ss_pred hhhhHHHHHHHHHH
Q 008589 189 GRRNEYEMHKLLAL 202 (560)
Q Consensus 189 ~RK~e~Ei~kLea~ 202 (560)
-+.....+..|++.
T Consensus 490 L~e~~~~ve~L~~~ 503 (652)
T COG2433 490 LEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444433
No 174
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.80 E-value=5.6e+02 Score=26.03 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKK 154 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK 154 (560)
++|+...-++||..+..=....+..+...++..|++.++.-....+
T Consensus 128 L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~kr 173 (201)
T KOG4603|consen 128 LKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKR 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666555444555667777788888887776554443
No 175
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=28.50 E-value=4e+02 Score=25.90 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=12.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhc
Q 008589 21 QDVDLLKNYVSKIQELEGELLRVKST 46 (560)
Q Consensus 21 q~~~l~k~yv~kIqeLe~El~~~k~~ 46 (560)
|++--+-.||-.-.. --||+.|.++
T Consensus 12 QT~py~pe~~~~~~~-~pE~l~L~~L 36 (154)
T PF14738_consen 12 QTDPYSPEYVVPEGS-NPELLTLATL 36 (154)
T ss_pred hcCCCCCCccCCCCC-ChhHhhHhhc
Confidence 444334444443322 4467777666
No 176
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.87 E-value=6.4e+02 Score=25.40 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc--ccchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFT--GADTSVLKQHYEKKVLELEQEKKILQ------VHLQQKIKQESEQFRM 173 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~--q~kl~KlKe~~EkKLs~Le~ElK~lq------VqLmkkMKEESekFR~ 173 (560)
++.+-.++-.++..++.|+.... ...+.++=..-+.++..|+++|..+. +-+|.+|-.+.+.|-.
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555542221 11222223333444444544443333 5677777777776655
No 177
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.61 E-value=1.3e+03 Score=28.99 Aligned_cols=34 Identities=24% Similarity=0.113 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 196 MHKLLALNQRQKMVLQRKTEEASMATKRLKELLE 229 (560)
Q Consensus 196 i~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~Le 229 (560)
+++.+..-..|..-|++-++++.....-|=..+.
T Consensus 523 ~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 523 QEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555677788888887766554444443
No 178
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=27.55 E-value=4.4e+02 Score=23.39 Aligned_cols=63 Identities=29% Similarity=0.425 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 108 KLDRELKELDKKLEQKEAEM-KRFTG--ADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMW 174 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~em-k~~~q--~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~w 174 (560)
+++..-.|..++.++-...+ ...+. .=...||++|++ +..|.+| ---+.-++|++.|+.|..-
T Consensus 11 kldrld~ef~kkm~eqn~kffadkpdestlspemkehyek-fe~miqe---htdkfnkkm~ehsehfk~k 76 (90)
T PF03037_consen 11 KLDRLDAEFNKKMQEQNKKFFADKPDESTLSPEMKEHYEK-FERMIQE---HTDKFNKKMHEHSEHFKHK 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccccCHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45555556666665554443 11111 124678999974 4444443 3345678999999999753
No 179
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.36 E-value=1.3e+03 Score=28.96 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008589 109 LDRELKELDKKLEQKEAEM 127 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~em 127 (560)
+-.+|.+|+.+.+++|.-.
T Consensus 179 ~h~eL~~lr~~e~~Le~~~ 197 (1072)
T KOG0979|consen 179 YHIELMDLREDEKSLEDKL 197 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4457888888888887553
No 180
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.23 E-value=4.3e+02 Score=25.01 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008589 108 KLDRELKELDKKLEQKEAEMKR 129 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~ 129 (560)
.|+.++.+|+.+|.+++.+.+.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~ 97 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKS 97 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777655433
No 181
>PRK00106 hypothetical protein; Provisional
Probab=27.12 E-value=1e+03 Score=27.53 Aligned_cols=32 Identities=6% Similarity=0.107 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 195 EMHKLLALNQRQKMVLQRKTEEASMATKRLKE 226 (560)
Q Consensus 195 Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe 226 (560)
++.+.+..-.+++..|..+.+++....+.+..
T Consensus 119 ~LekrE~eLe~kekeLe~reeeLee~~~~~~~ 150 (535)
T PRK00106 119 NLSSKEKTLESKEQSLTDKSKHIDEREEQVEK 150 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444443333333
No 182
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=27.09 E-value=1e+03 Score=27.43 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhH----------------------------------HhhhhHHHHHHHHHH--
Q 008589 159 HLQQKIKQESEQFRMWKASREKEVLQLKK----------------------------------EGRRNEYEMHKLLAL-- 202 (560)
Q Consensus 159 qLmkkMKEESekFR~wk~~reKEIaQLKK----------------------------------e~RK~e~Ei~kLea~-- 202 (560)
+|+.|.|.|.+-.....+-++--|+.|.+ +..+-.+|+.+++-.
T Consensus 133 rLVqQyK~ErE~naiI~Q~re~k~~rleslmdg~l~~~e~~~ee~~sl~~e~KlLk~~~en~pevl~~~~E~k~~qeel~ 212 (488)
T PF06548_consen 133 RLVQQYKHERECNAIIAQTREDKILRLESLMDGVLPTEEFIDEEYVSLMHEHKLLKEKYENHPEVLKEKIELKRVQEELE 212 (488)
T ss_pred HHHHHHcccchhhHHHHHhhhhHHHHHHHhhccccchHHHhhhHhhhhhhHhhhhhhhccCchHHHhhHhHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC-----------------CCCCchhhHHHHHHHHHH
Q 008589 203 --------NQRQKMVLQRKTEEASMATKRLKELLESRKASSRETS-----------------GSDSNIIFYEKALMQAIE 257 (560)
Q Consensus 203 --------~~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~s-----------------gs~~g~~~~a~~lq~WL~ 257 (560)
..-++..|+ |...++..|+-.+..-.+..+.++ +.......-.....+|-+
T Consensus 213 ~~~~~~~d~~EkE~Ll~----EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE 288 (488)
T PF06548_consen 213 EYRNFSFDMGEKEVLLE----EIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTE 288 (488)
T ss_pred hccccccCcchHHHHHH----HHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------------------------------hH
Q 008589 258 HELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQAN-------------------------------------LR 300 (560)
Q Consensus 258 ~ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n-------------------------------------i~ 300 (560)
.|-+-+--+.|+|..||....-=..+..||..=|.-.+-++ |.
T Consensus 289 ~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~ 368 (488)
T PF06548_consen 289 AESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIE 368 (488)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhccCCCCCCcc
Q 008589 301 RVKKRISKNGNRAGSGQF 318 (560)
Q Consensus 301 dlke~~s~~~~~~~~~~~ 318 (560)
|+|..++.-+-.+.+..|
T Consensus 369 dVKkaAakAg~kG~~~rF 386 (488)
T PF06548_consen 369 DVKKAAAKAGVKGAESRF 386 (488)
T ss_pred HHHHHHHHhccccchHHH
No 183
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.82 E-value=7.5e+02 Score=27.23 Aligned_cols=79 Identities=29% Similarity=0.375 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008589 104 SLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVL 183 (560)
Q Consensus 104 ~lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIa 183 (560)
++|++++-.-.|---.||.+|.+ |++.|..++.+-+.++|.-. ++=..+|+..+.....|-.
T Consensus 319 s~qet~eaKr~e~~~e~qrkEee-----------~rqmFvqrvkekE~elke~E-------kel~~kf~~lkr~h~eEk~ 380 (406)
T KOG3859|consen 319 SLQETYEAKRNEFLGELQRKEEE-----------MRQMFVQRVKEKEAELKEAE-------KELHEKFDRLKRLHQEEKK 380 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 45666665555555556555533 35556666665555555432 2223455555555555555
Q ss_pred HHhHHhhhhHHHHHHHH
Q 008589 184 QLKKEGRRNEYEMHKLL 200 (560)
Q Consensus 184 QLKKe~RK~e~Ei~kLe 200 (560)
+|..+-|..+-++..++
T Consensus 381 kle~~rr~Leee~~~f~ 397 (406)
T KOG3859|consen 381 KLEEKRKQLEEEVNAFQ 397 (406)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544443
No 184
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=26.07 E-value=8.7e+02 Score=26.33 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhcccCC----CCCC-chhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 206 QKMVLQRKTEEASMATKRLKELLES-RKASSRETS----GSDS-NIIF---YEKALMQAIEHELEVTVRVHEVRSEYERQ 276 (560)
Q Consensus 206 Q~~VLKRKtEEA~AA~KRLKe~Lek-RKas~Rk~s----gs~~-g~~~---~a~~lq~WL~~ELEv~vsv~Eae~~LErL 276 (560)
|..-.|.-+|--..-.+|+|.-|++ |.++.-... -+++ .... ++... -.--.+.+++..|.+-
T Consensus 103 Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~--------~~~sk~e~L~ekynke 174 (307)
T PF10481_consen 103 QLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQY--------YSDSKYEELQEKYNKE 174 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhh--------hhhhhHHHHHHHHHHH
Confidence 3444455666666668899988886 333321110 1111 0000 11100 1123467889999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008589 277 MEERARMANEVARLKEES 294 (560)
Q Consensus 277 meeRa~La~EL~~Lk~e~ 294 (560)
.++|+.|..|+..|....
T Consensus 175 veerkrle~e~k~lq~k~ 192 (307)
T PF10481_consen 175 VEERKRLEAEVKALQAKK 192 (307)
T ss_pred HHHHhhHHHHHHHHhccc
Confidence 999999999999987543
No 185
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=26.02 E-value=1.2e+03 Score=29.18 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=4.9
Q ss_pred cccCCCCCCCC
Q 008589 362 CRAAGGACKAS 372 (560)
Q Consensus 362 cra~g~~Cg~s 372 (560)
|.-.|+.|-.+
T Consensus 730 ~~~~~~~~~~~ 740 (1021)
T PTZ00266 730 CKYLGGAAYGG 740 (1021)
T ss_pred ccccccccccc
Confidence 34444444433
No 186
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=25.94 E-value=1.2e+03 Score=28.00 Aligned_cols=241 Identities=20% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCCcCCCCCCCCCccccCCCCCccccccccccccccCcchhhhHHHHHHhh-hh
Q 008589 26 LKNYVSKIQELEGELLRVKSTHNSKRSRNADSVDTDDDGFRSKNGLFPSLNEFSADCDSKVEDISDEIEDEEKELEH-SS 104 (560)
Q Consensus 26 ~k~yv~kIqeLe~El~~~k~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~l~e~~s~~~~~~~~~~~Ei~~~eKE~eh-~~ 104 (560)
|+.-+|.|++.+.-|.....- +.+++.|++. |-.++......+.....+.+.-.+.-+.+++. ..
T Consensus 267 ~~~L~Ssl~e~~~~l~~~~~~----------~k~t~~~~~~----lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~ 332 (698)
T KOG0978|consen 267 MRHLISSLQEHEKLLKEYERE----------LKDTESDNLK----LRKQHSSAADSLESKSRDLESLLDKIQDLISQEAE 332 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HhcccchHHH----HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccc--chHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 008589 105 LQEKLDRELKELDKKLEQKEAEMKRFTGA--DTSVLKQHYEKKVLELEQEK----KILQVHLQQKIKQESEQFRMWKASR 178 (560)
Q Consensus 105 lQ~k~~KeLeEL~kRLqelE~emk~~~q~--kl~KlKe~~EkKLs~Le~El----K~lqVqLmkkMKEESekFR~wk~~r 178 (560)
++.++.-.+.+..+.++.+..+...-.+. ++.++|...-+.+...-..+ +...-+|..+.+.|.+-.++-...-
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~ 412 (698)
T KOG0978|consen 333 LSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKAL 412 (698)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHH
Q 008589 179 EKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRKASSRETSGSDSNIIFYEKALMQAIEH 258 (560)
Q Consensus 179 eKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRKas~Rk~sgs~~g~~~~a~~lq~WL~~ 258 (560)
.++...=..+. .-....+.-++...+.--|+++.+.+.+. .-+..... +++-..-++
T Consensus 413 ~k~e~~e~~k~--~~d~~~r~~~~~~~~~e~Lqk~~~~~k~l------l~e~~t~g---------------sA~ed~Qeq 469 (698)
T KOG0978|consen 413 DKEERSEIRKQ--ALDDAERQIRQVEELSEELQKKEKNFKCL------LSEMETIG---------------SAFEDMQEQ 469 (698)
T ss_pred HHHHHHHHHhh--hhHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH---------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHH
Q 008589 259 ELEVTVRVHEVRSEYERQMEERARMANEVARLKEESEQAN--LRRVK 303 (560)
Q Consensus 259 ELEv~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n--i~dlk 303 (560)
-..+++.+.+....+=.+|-+|..+......|.++...++ |..|+
T Consensus 470 n~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~ 516 (698)
T KOG0978|consen 470 NQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLK 516 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 187
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.91 E-value=3.9e+02 Score=27.31 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008589 108 KLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASR 178 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~r 178 (560)
.++.+|+..++++-.+-..+ ++.+..++..|..-..|..++-.++- .++.|+.+..+|+.....-
T Consensus 85 eLe~~L~~~~qk~~tl~e~~-----en~K~~~e~tEer~~el~kklnslkk-~~e~lr~el~k~~e~dpqv 149 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESI-----ENRKAGREETEERTDELTKKLNSLKK-ILESLRWELAKIQETDPQV 149 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHH-----HHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCHHH
Confidence 34555555555555554322 11222233333322244444433333 4455666666666555443
No 188
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.91 E-value=2.3e+02 Score=26.53 Aligned_cols=47 Identities=28% Similarity=0.472 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 111 RELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQ 161 (560)
Q Consensus 111 KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLm 161 (560)
+++.++++.+..++..|. ..+..+++.|+..+..|+.+++.+.-.|.
T Consensus 10 ~ki~~l~~~~~~i~~~~~----~~I~~i~~~~~~~~~~l~~~i~~l~~~l~ 56 (149)
T PF07352_consen 10 RKIAELQREIARIEAEAN----DEIARIKEWYEAEIAPLQNRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888887763 47888999999999999999888764443
No 189
>PF14282 FlxA: FlxA-like protein
Probab=25.88 E-value=3.8e+02 Score=24.11 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008589 144 KKVLELEQEKKILQVHLQ 161 (560)
Q Consensus 144 kKLs~Le~ElK~lqVqLm 161 (560)
.++..|+.+|..|+-+|+
T Consensus 51 ~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555554444
No 190
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.80 E-value=4e+02 Score=28.47 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=18.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 008589 101 EHSSLQEKLDRELKELDKKLEQKE 124 (560)
Q Consensus 101 eh~~lQ~k~~KeLeEL~kRLqelE 124 (560)
+|...+.+|..+..-|.++|.++-
T Consensus 222 dh~V~i~~lkeeia~Lkk~L~qkd 245 (305)
T KOG3990|consen 222 DHMVKIQKLKEEIARLKKLLHQKD 245 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhH
Confidence 466788888888888888887775
No 191
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.57 E-value=8e+02 Score=26.58 Aligned_cols=88 Identities=20% Similarity=0.171 Sum_probs=45.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 97 EKELEHSSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLK--QHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMW 174 (560)
Q Consensus 97 eKE~eh~~lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlK--e~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~w 174 (560)
-.++|..........-+++...+|++-+.+.+..=..+..+.. +.+-.+....+++++.++..++++|-++-...+.|
T Consensus 99 LE~vEdii~nL~~~~d~~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~rr~~~~~~e~ee~~~~~~ 178 (309)
T TIGR00570 99 LEEVEDIVYNLTNNIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRK 178 (309)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333334455555666555553222111111221 22333445667777777888888887777777766
Q ss_pred HHHhHHHHHHHh
Q 008589 175 KASREKEVLQLK 186 (560)
Q Consensus 175 k~~reKEIaQLK 186 (560)
... --|.+|-
T Consensus 179 ~~~--~~ld~L~ 188 (309)
T TIGR00570 179 NKQ--ALLDELE 188 (309)
T ss_pred HHH--HHHHHHH
Confidence 543 3355553
No 192
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.42 E-value=3.3e+02 Score=24.72 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=19.3
Q ss_pred Hhhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 008589 100 LEHSS-LQEKLDRELKELDKKLEQKEAE 126 (560)
Q Consensus 100 ~eh~~-lQ~k~~KeLeEL~kRLqelE~e 126 (560)
++.++ .|+.+...+..+..+++.+..+
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~ 95 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQE 95 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 6777888888888888777655
No 193
>PRK11519 tyrosine kinase; Provisional
Probab=25.31 E-value=1.1e+03 Score=27.47 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 008589 106 QEKLDRELKELDKKLEQKEAEMKRF 130 (560)
Q Consensus 106 Q~k~~KeLeEL~kRLqelE~emk~~ 130 (560)
.+-++++|.+++.+|...|..+..+
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~f 293 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAF 293 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999998887544
No 194
>PRK00106 hypothetical protein; Provisional
Probab=25.29 E-value=1.1e+03 Score=27.28 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 190 RRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRK 232 (560)
Q Consensus 190 RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRK 232 (560)
.+++.++...+..-..+..-|..+.+++......+...|+...
T Consensus 121 ekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a 163 (535)
T PRK00106 121 SSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVA 163 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666677777777777777766666666444
No 195
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=25.25 E-value=6.8e+02 Score=27.65 Aligned_cols=85 Identities=21% Similarity=0.353 Sum_probs=43.9
Q ss_pred CCCCCCCCccccCC---CCCc----cccccccc---cccccCcchhhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHH
Q 008589 57 SVDTDDDGFRSKNG---LFPS----LNEFSADC---DSKVEDISDEIEDEEKELEHSS-LQEKLDRELKELDKKLEQKEA 125 (560)
Q Consensus 57 ~~~~d~~g~~~~~~---~~~~----l~e~~s~~---~~~~~~~~~Ei~~~eKE~eh~~-lQ~k~~KeLeEL~kRLqelE~ 125 (560)
+.|-.|+||.-+-. -|+- |.|++|.. |+...-....+..+....--+. .|-+|+-+|..+..+-+++.
T Consensus 177 DeDD~ddg~stkhla~arf~rN~rLIsei~SesvVpDvrsVVtt~RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kK- 255 (410)
T KOG4715|consen 177 DEDDYDDGFSTKHLATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKK- 255 (410)
T ss_pred CccccccccchhhhhhhhhhhhhHHHHHHhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45566778765431 1222 44444432 2222222224444444444332 67778877776666665554
Q ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 008589 126 EMKRFTGADTSVLKQHYEKKVLELEQEKKIL 156 (560)
Q Consensus 126 emk~~~q~kl~KlKe~~EkKLs~Le~ElK~l 156 (560)
..|.+---.++.|||++
T Consensus 256 --------------rk~~estdsf~~eLKr~ 272 (410)
T KOG4715|consen 256 --------------RKFLESTDSFNNELKRL 272 (410)
T ss_pred --------------HHHHhccHHHHHHHHHh
Confidence 33333345678888876
No 196
>PRK09039 hypothetical protein; Validated
Probab=25.21 E-value=8.7e+02 Score=26.07 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 105 LQEKLDRELKELDKKLEQKEAEMKR 129 (560)
Q Consensus 105 lQ~k~~KeLeEL~kRLqelE~emk~ 129 (560)
.|-.+..++..++..|.+++.++..
T Consensus 40 ~q~fLs~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 40 AQFFLSREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4666777777777777777777644
No 197
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=24.98 E-value=1.1e+03 Score=27.00 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHH
Q 008589 145 KVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLL 200 (560)
Q Consensus 145 KLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLe 200 (560)
++...+-||..||+.+ .++.+|-.+-+.......+.+.++....-+-.++|..+.
T Consensus 49 ~~~~~E~~l~~Lq~e~-~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 49 KLQEKELELNRLQEEN-TQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555432 233444444444444444555555555555555555544
No 198
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.85 E-value=1.2e+03 Score=27.82 Aligned_cols=16 Identities=50% Similarity=0.393 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 008589 137 VLKQHYEKKVLELEQE 152 (560)
Q Consensus 137 KlKe~~EkKLs~Le~E 152 (560)
+++++.++....++.+
T Consensus 536 ~~~~e~~~~~~~l~~~ 551 (771)
T TIGR01069 536 KLLKEQEKLKKELEQE 551 (771)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 199
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.76 E-value=5.6e+02 Score=23.71 Aligned_cols=11 Identities=27% Similarity=0.169 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 008589 216 EASMATKRLKE 226 (560)
Q Consensus 216 EA~AA~KRLKe 226 (560)
.+.++.|.+++
T Consensus 105 ~~~~~~k~~ke 115 (151)
T PF11559_consen 105 SLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 200
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.71 E-value=7e+02 Score=24.78 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH---HHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHH
Q 008589 136 SVLKQHYEKKVLELEQEKKILQ-----------VHLQQKIKQE---SEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLA 201 (560)
Q Consensus 136 ~KlKe~~EkKLs~Le~ElK~lq-----------VqLmkkMKEE---SekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea 201 (560)
..++..|+..|....++-|..+ +..+++++.. +..++.....-..|+.+|+++-...+.++.+|+.
T Consensus 53 s~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 53 AYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888877776555443332 5666777765 4455555666677788888877777777776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008589 202 LNQRQKMVLQRKTEEASMATKRL 224 (560)
Q Consensus 202 ~~~kQ~~VLKRKtEEA~AA~KRL 224 (560)
.+ .+++..++.......|-
T Consensus 133 ~~----~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 133 RL----STIEEDYQTLIDIMDRA 151 (161)
T ss_pred HH----HHHHHHHHHHHHHHHHH
Confidence 43 45666666666554443
No 201
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=24.55 E-value=1.1e+03 Score=26.83 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 159 HLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQ-RQKMVLQRKTEEASMATKRLKELL 228 (560)
Q Consensus 159 qLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~-kQ~~VLKRKtEEA~AA~KRLKe~L 228 (560)
.-++++..|++.++........|+..++.+-..-...|..++..-. .+..+.-=|..|+.| .-.++.+.
T Consensus 372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~A-la~ik~l~ 441 (522)
T PF05701_consen 372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALA-LAEIKALS 441 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 4567788888888887777777888888777766666666554322 233444444444443 34444433
No 202
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=24.53 E-value=7.4e+02 Score=25.38 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008589 150 EQEKKILQVHLQQKIKQESEQFRMWKASR 178 (560)
Q Consensus 150 e~ElK~lqVqLmkkMKEESekFR~wk~~r 178 (560)
.++|..-+.+|.+|+.++++.|+..+...
T Consensus 133 ~~el~~ek~kL~~q~~e~~e~lr~L~~~k 161 (221)
T PF10376_consen 133 QQELEEEKRKLEKQVDEKEEELRRLKLVK 161 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444455666777777777776655544
No 203
>PRK14148 heat shock protein GrpE; Provisional
Probab=24.43 E-value=3.3e+02 Score=27.41 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=20.0
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008589 93 IEDEEKELEHSSLQEKLDRELKELDKKLEQKEAE 126 (560)
Q Consensus 93 i~~~eKE~eh~~lQ~k~~KeLeEL~kRLqelE~e 126 (560)
+.+.+.+-+...-+..++++++.+...|..++.+
T Consensus 22 ~~~~~~~~~~~~e~~~~~~e~~~l~~~l~~l~~e 55 (195)
T PRK14148 22 VETAQESASGALEELSVEEQLERAKDTIKELEDS 55 (195)
T ss_pred hhhcchhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 3344445555555555666677777777666654
No 204
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=24.40 E-value=1e+03 Score=26.48 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHhhhcc
Q 008589 275 RQMEERARMANEVARLKEESE------QANLRRVKKRISKNG 310 (560)
Q Consensus 275 rLmeeRa~La~EL~~Lk~e~e------~~ni~dlke~~s~~~ 310 (560)
.++.-|++|+++|..|+.=.. .+.|..|..++.++.
T Consensus 176 ~l~~lR~Aia~DI~~L~av~~vD~~Gl~lrL~~L~~qVd~Lp 217 (390)
T PRK10920 176 SLITVRRAITDDIATLSAVSQVDYDGIILKLNQLSNQVDNLR 217 (390)
T ss_pred chHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhCC
Confidence 467889999999998875221 113555655555443
No 205
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=24.13 E-value=7.2e+02 Score=32.85 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQK 123 (560)
Q Consensus 109 ~~KeLeEL~kRLqel 123 (560)
|-++|+.|.+||..+
T Consensus 80 yy~qlq~l~krld~l 94 (2195)
T KOG2122|consen 80 YYSQLQGLSKRLDEL 94 (2195)
T ss_pred HHHHHhhhhhHHHHH
Confidence 556788888888888
No 206
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=24.04 E-value=1.5e+03 Score=28.31 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 258 HELEVTVRVHEVRSEYERQMEERARMAN 285 (560)
Q Consensus 258 ~ELEv~vsv~Eae~~LErLmeeRa~La~ 285 (560)
+=+.|...+.|+++..|.+-.-+..|.+
T Consensus 331 qkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 331 QKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3345556666666666655444444443
No 207
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.90 E-value=6.7e+02 Score=29.86 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008589 156 LQVHLQQKIKQESEQFRMWKASREKEVLQL 185 (560)
Q Consensus 156 lqVqLmkkMKEESekFR~wk~~reKEIaQL 185 (560)
+-..++++.+.|..+..+.|+.+-||+..-
T Consensus 287 ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k 316 (660)
T KOG4302|consen 287 LSLDIIEQVEKEVDRLEQLKASNMKELIEK 316 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 347889999999999999999998887754
No 208
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.74 E-value=7.4e+02 Score=24.75 Aligned_cols=78 Identities=9% Similarity=0.119 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKIL-----------QVHLQQKIKQESEQFRMWKAS 177 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~l-----------qVqLmkkMKEESekFR~wk~~ 177 (560)
+.+-|++|+.++..--.+-. ....+...+...|+.+|.+...+-..+ ....+.++.++..+.. ..
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae-~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l---~~ 153 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAA-RLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKL---KE 153 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 44455555555544322211 122345566677777777766665443 2445555666655432 33
Q ss_pred hHHHHHHHhHHhh
Q 008589 178 REKEVLQLKKEGR 190 (560)
Q Consensus 178 reKEIaQLKKe~R 190 (560)
-+++|.+.|..-+
T Consensus 154 Ae~~I~~ek~~A~ 166 (204)
T PRK09174 154 AEARIAAIKAKAM 166 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 209
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.67 E-value=4.2e+02 Score=21.80 Aligned_cols=50 Identities=26% Similarity=0.445 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 107 EKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHL 160 (560)
Q Consensus 107 ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqL 160 (560)
...+..|.|...-|.++|-|+...+ ...+..|..+|.....++++++-.|
T Consensus 28 ~~~e~~l~ea~~~l~qMe~E~~~~p----~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 28 REIERDLDEAEELLKQMELEVRSLP----PSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTS-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456678888888888888866553 2667888888888888887776443
No 210
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.57 E-value=1.4e+03 Score=27.91 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=50.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHH--------------HHHH---------------HHHHHHHHHHHHHHHHHHHHhHHH
Q 008589 131 TGADTSVLKQHYEKKVLELEQEK--------------KILQ---------------VHLQQKIKQESEQFRMWKASREKE 181 (560)
Q Consensus 131 ~q~kl~KlKe~~EkKLs~Le~El--------------K~lq---------------VqLmkkMKEESekFR~wk~~reKE 181 (560)
..+.+.-++++|-..|..|+.-+ |.++ -.+|+++-+|-++.-+......--
T Consensus 396 ~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~i 475 (961)
T KOG4673|consen 396 NESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAI 475 (961)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33456667777766666655433 3222 234555666666666666666666
Q ss_pred HHHHhHHhhhhHH-------HHHHHHHHHHHHHHHHHHHHH
Q 008589 182 VLQLKKEGRRNEY-------EMHKLLALNQRQKMVLQRKTE 215 (560)
Q Consensus 182 IaQLKKe~RK~e~-------Ei~kLea~~~kQ~~VLKRKtE 215 (560)
|..||.+.+-.++ .|..|+..-++-+.||.-|.|
T Consensus 476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee 516 (961)
T KOG4673|consen 476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEE 516 (961)
T ss_pred HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHH
Confidence 6667766665552 466667777777777766644
No 211
>PF12669 P12: Virus attachment protein p12 family
Probab=23.41 E-value=55 Score=26.81 Aligned_cols=11 Identities=55% Similarity=1.283 Sum_probs=8.2
Q ss_pred CccccCCCccc
Q 008589 345 LCCTCSKSSLC 355 (560)
Q Consensus 345 ~cCsCsk~S~C 355 (560)
.||.||-.|.|
T Consensus 29 ~c~gCs~~sgC 39 (58)
T PF12669_consen 29 CCCGCSGCSGC 39 (58)
T ss_pred CCCCCCCCCCc
Confidence 67788777766
No 212
>PRK10780 periplasmic chaperone; Provisional
Probab=23.15 E-value=6.3e+02 Score=23.93 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh------------------hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 105 LQEKLDRELKELDKKLEQKEAEM------------------KRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQ 166 (560)
Q Consensus 105 lQ~k~~KeLeEL~kRLqelE~em------------------k~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKE 166 (560)
.+.+|+++...++..|+.++.++ .......+....+.|..+...+++++...+-.++..|-.
T Consensus 44 ~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~~e~~~~i~~ 123 (165)
T PRK10780 44 VSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRRRRSNEERNKILT 123 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 008589 167 ESEQF 171 (560)
Q Consensus 167 ESekF 171 (560)
....+
T Consensus 124 ki~~a 128 (165)
T PRK10780 124 RIQTA 128 (165)
T ss_pred HHHHH
No 213
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=23.00 E-value=7e+02 Score=24.18 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=48.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 008589 133 ADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQ 211 (560)
Q Consensus 133 ~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLK 211 (560)
..+..++++|+..|.+.+.|-.. ++.+-++++.+....-....++.++-.++.-+.+.+-.+..+..+-+..|--
T Consensus 52 ~eA~~l~~e~e~~L~~Ar~EA~~----Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~ 126 (154)
T PRK06568 52 EDAALLFEQTNAQIKKLETLRSQ----MIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCD 126 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888777666544 6667777776666666666555555555555666666666666666665544
No 214
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=22.94 E-value=5.4e+02 Score=23.06 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHH------HH------HHHHHHHHHHHHHHHHhHHHHH
Q 008589 147 LELEQEKKILQVH------LQ------QKIKQESEQFRMWKASREKEVL 183 (560)
Q Consensus 147 s~Le~ElK~lqVq------Lm------kkMKEESekFR~wk~~reKEIa 183 (560)
..|..||+.|+-+ +. .+++++..+|+.+.-..++|++
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~~gerE~l 75 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYVEGEREML 75 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6777888777622 11 2566777777777776777664
No 215
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.87 E-value=8e+02 Score=24.78 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 008589 105 LQEKLDRELKELDKKLEQKE 124 (560)
Q Consensus 105 lQ~k~~KeLeEL~kRLqelE 124 (560)
.-.++.+++++++.+|.+..
T Consensus 94 rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666665544
No 216
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.45 E-value=4.3e+02 Score=25.32 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-cccchHHHHHHHHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRF-TGADTSVLKQHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~-~q~kl~KlKe~~EkKLs~Le~ElK~lq 157 (560)
..++..+|++.+.++-.||... .+++..|- -+-++++.+++.|+++++
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkw-aKl~Rk~~kl~~el~~~~ 86 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKW-AKLNRKLDKLEEELEKLN 86 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665443 33332221 112556666666665554
No 217
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.26 E-value=9.3e+02 Score=27.58 Aligned_cols=41 Identities=29% Similarity=0.355 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHH
Q 008589 160 LQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLL 200 (560)
Q Consensus 160 LmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLe 200 (560)
=|.+.++++++.|..-.--++||..|+++--+.+.-|.-|+
T Consensus 142 em~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 142 EMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46678899999999999999999999999999998888888
No 218
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=22.06 E-value=1.4e+03 Score=27.71 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 136 SVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTE 215 (560)
Q Consensus 136 ~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtE 215 (560)
.|++.+.|+++..-..-...-+-.+-+++++|.++-++....+..+--|+++..+.....-...+-+..+-+.-=++|++
T Consensus 260 eK~R~erEr~~leeKrlk~~~~~eek~~~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k~~ 339 (811)
T KOG4364|consen 260 EKERKERERQVLEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAKIM 339 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 008589 216 EASMATKRLKE 226 (560)
Q Consensus 216 EA~AA~KRLKe 226 (560)
|+.-...|-.+
T Consensus 340 Erkee~~rk~d 350 (811)
T KOG4364|consen 340 ERKEEKSRKSD 350 (811)
T ss_pred HHHHHHhhhhh
No 219
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.04 E-value=1.1e+03 Score=26.21 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=11.5
Q ss_pred HHHHHhHHhhhhHHHHHHHHH
Q 008589 181 EVLQLKKEGRRNEYEMHKLLA 201 (560)
Q Consensus 181 EIaQLKKe~RK~e~Ei~kLea 201 (560)
+|..|+++-+..+.++..+++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~ 92 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLED 92 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 220
>PRK09039 hypothetical protein; Validated
Probab=21.98 E-value=1e+03 Score=25.62 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008589 143 EKKVLELEQEKKILQVH 159 (560)
Q Consensus 143 EkKLs~Le~ElK~lqVq 159 (560)
...|+.+.+||..++-+
T Consensus 45 s~~i~~~~~eL~~L~~q 61 (343)
T PRK09039 45 SREISGKDSALDRLNSQ 61 (343)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 56666677777666544
No 221
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.89 E-value=7.9e+02 Score=24.40 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHH-hhhhhccC
Q 008589 23 VDLLKNYVSKIQELEGEL-LRVKSTHN 48 (560)
Q Consensus 23 ~~l~k~yv~kIqeLe~El-~~~k~~~~ 48 (560)
++-|-.|+..=..||.++ ..|..++.
T Consensus 21 ~~el~~f~keRa~iE~eYak~L~kLak 47 (236)
T cd07651 21 LEELRSFYKERASIEEEYAKRLEKLSR 47 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444556777888899999 88888743
No 222
>PF02067 Metallothio_5: Metallothionein family 5; InterPro: IPR000966 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium, and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ] species, including sea urchins, fungi, insects and cyanobacteria. Class III MTs are atypical polypeptides composed of gamma-glutamylcysteinyl units. This original classification system has been found to be limited, in the sense that it does not allow clear differentiation of patterns of structural similarities, either between or within classes. Consequently, all class I and class I MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. Diptera (Drosophila, family 5) MTs are 40-43 residue proteins that contain 10 conserved cysteines arranged in five Cys-X-Cys groups. In particular, the consensus pattern C-G-x(2)-C-x-C-x(2)-Q-x(5)-C-x-C-x(2)-D-C-x-C has been found to be diagnostic of family 5 MTs. The protein is found primarily in the alimentary canal, and its induction is stimulated by ingestion of cadmium or copper []. Mercury, silver and zinc induce the protein to a lesser extent. Family 5 includes subfamilies: d1, d2. Only one d2 is known until now. Subfamilies hit the same entry.; GO: 0046872 metal ion binding
Probab=21.62 E-value=45 Score=26.22 Aligned_cols=16 Identities=31% Similarity=1.286 Sum_probs=8.4
Q ss_pred ccccccCCCCCCCCCCcc
Q 008589 359 KCQCRAAGGACKASCGCS 376 (560)
Q Consensus 359 kC~cra~g~~Cg~sCgC~ 376 (560)
-|+|-+. .||.+|+|.
T Consensus 9 ~CkC~~~--kcg~~C~C~ 24 (41)
T PF02067_consen 9 NCKCSSQ--KCGGNCACN 24 (41)
T ss_pred CCEecCC--ccCCCccCC
Confidence 3445443 366666664
No 223
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.60 E-value=3.1e+02 Score=22.47 Aligned_cols=50 Identities=28% Similarity=0.496 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008589 108 KLDRELKELDKKLEQKEAEM--KRFTGADTSVLKQHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~em--k~~~q~kl~KlKe~~EkKLs~Le~ElK~lq 157 (560)
++.|++..+.+.|..++..| ..|....-..+-+....++.++..++..++
T Consensus 8 rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~ 59 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLE 59 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554 122111112233444444555555554443
No 224
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=21.58 E-value=1.6e+03 Score=27.87 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 008589 205 RQKMVLQRKTEEASM 219 (560)
Q Consensus 205 kQ~~VLKRKtEEA~A 219 (560)
++++.+|||+||...
T Consensus 957 k~e~e~kRK~eEeqr 971 (1259)
T KOG0163|consen 957 KAEMETKRKAEEEQR 971 (1259)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467788888888763
No 225
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.10 E-value=7e+02 Score=24.18 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 103 SSLQEKLDRELKELDKKLEQKEAEMKRF---TGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIK 165 (560)
Q Consensus 103 ~~lQ~k~~KeLeEL~kRLqelE~emk~~---~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMK 165 (560)
-.+..++..+-.+||.+|-.+..|+... +..+-.+++. -.+.|.+|+..|..++|++--+|.
T Consensus 53 q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~a-L~kEI~~Lr~kL~e~r~~~~~~~~ 117 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINA-VAKEMENLRQSLDELRVKRDIAMA 117 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777899999999999997543 2222222221 123345555555555554444433
No 226
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.03 E-value=1.4e+03 Score=27.09 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=35.2
Q ss_pred hHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008589 178 REKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESR 231 (560)
Q Consensus 178 reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekR 231 (560)
++++|+||=.+-.+.+.-.+.+...|..|-.-|=+......-...-|+..|..|
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677777777777666666666666666666666666655555555566666544
No 227
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.68 E-value=9.8e+02 Score=24.99 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 008589 135 TSVLKQHYEKKVLELEQEKKILQ-VHL-QQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQR 212 (560)
Q Consensus 135 l~KlKe~~EkKLs~Le~ElK~lq-VqL-mkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKR 212 (560)
+.+-|..|++-+.+.+.-..+.. ... +.-.+.+.++++.--..+..++. .-|+.|.+. |+..+..|....-.
T Consensus 129 leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e-----~aKn~Y~~~-L~~~N~~q~k~Y~e 202 (252)
T cd07675 129 MDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMAD-----ESKNEYAAQ-LQNFNGEQHKHFYI 202 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-HHHHHHhhHhHHHH
Confidence 45556666666665554433211 000 00123334444444444433332 345566543 44446667766665
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 008589 213 KTEEASMATKRLKELLESRK 232 (560)
Q Consensus 213 KtEEA~AA~KRLKe~LekRK 232 (560)
-+.++ -.+|+++-+.|-
T Consensus 203 ~mP~v---fd~lQ~leE~Ri 219 (252)
T cd07675 203 VIPQI---YKQLQEMDERRT 219 (252)
T ss_pred HHHHH---HHHHHHHHHHHH
Confidence 56655 457777777665
No 228
>PF13864 Enkurin: Calmodulin-binding
Probab=20.59 E-value=4.8e+02 Score=22.87 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhc----cccchHHHHHHHHHHHHHHHHHHHHH
Q 008589 111 RELKELDKKLEQKEAEMKRF----TGADTSVLKQHYEKKVLELEQEKKIL 156 (560)
Q Consensus 111 KeLeEL~kRLqelE~emk~~----~q~kl~KlKe~~EkKLs~Le~ElK~l 156 (560)
..|..|.++..++..++..+ ..-..+.-|+.+|++|..++..|+.+
T Consensus 44 ~lL~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 44 ELLEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666664322 22335666789999999999999876
No 229
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=20.37 E-value=5.5e+02 Score=24.34 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------hhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008589 106 QEKLDRELKELDKKLEQKEAE-------MKRFTGADTSVLKQHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 106 Q~k~~KeLeEL~kRLqelE~e-------mk~~~q~kl~KlKe~~EkKLs~Le~ElK~lq 157 (560)
+..|...+..++..|++|+-+ .+..+...+..++++|+.+.+.+..-++.+.
T Consensus 22 ~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~ 80 (131)
T PF11068_consen 22 LQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLL 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555444 3333334677777777777777666655543
No 230
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.29 E-value=4.3e+02 Score=20.79 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 265 RVHEVRSEYERQMEERARMANEVARLKEES 294 (560)
Q Consensus 265 sv~Eae~~LErLmeeRa~La~EL~~Lk~e~ 294 (560)
....+...++.|..+...|-.++..|+..+
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566677777777777777777666544
No 231
>PRK15396 murein lipoprotein; Provisional
Probab=20.19 E-value=4.3e+02 Score=23.19 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=24.0
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 182 VLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKEL 227 (560)
Q Consensus 182 IaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~ 227 (560)
|.+|..+......++..+....+.=..-.+--.+||..||.||--.
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333333558999999998543
No 232
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=20.06 E-value=1.1e+03 Score=25.41 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 272 EYERQMEERARMANEVARLKEESEQA 297 (560)
Q Consensus 272 ~LErLmeeRa~La~EL~~Lk~e~e~~ 297 (560)
-||.-+.++..|...+..|+.++-++
T Consensus 151 fLESELdEke~llesvqRLkdEardl 176 (333)
T KOG1853|consen 151 FLESELDEKEVLLESVQRLKDEARDL 176 (333)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888888888876554
Done!