Query 008589
Match_columns 560
No_of_seqs 130 out of 155
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 07:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 94.6 0.9 3.1E-05 47.7 16.5 70 161-230 511-580 (597)
2 1i84_S Smooth muscle myosin he 90.8 0.64 2.2E-05 54.2 9.5 36 91-126 857-893 (1184)
3 2v71_A Nuclear distribution pr 90.7 12 0.00042 35.9 19.0 45 262-307 128-178 (189)
4 2dfs_A Myosin-5A; myosin-V, in 89.1 13 0.00044 43.5 18.3 16 109-124 958-973 (1080)
5 2dfs_A Myosin-5A; myosin-V, in 88.4 4.5 0.00015 47.2 13.9 92 106-203 923-1014(1080)
6 3vkg_A Dynein heavy chain, cyt 88.2 77 0.0026 41.6 26.7 44 254-297 2059-2103(3245)
7 1ml9_A Histone H3 methyltransf 86.5 0.41 1.4E-05 47.8 3.5 42 344-386 47-128 (302)
8 1x79_B RAB GTPase binding effe 86.4 15 0.00053 32.7 13.1 33 265-297 71-103 (112)
9 3oja_A Leucine-rich immune mol 84.0 21 0.00071 36.7 14.9 46 137-183 414-459 (487)
10 1mvh_A Cryptic LOCI regulator 83.4 0.6 2E-05 46.8 3.1 41 345-386 67-132 (299)
11 3hna_A Histone-lysine N-methyl 82.0 0.5 1.7E-05 47.2 1.9 38 345-385 81-141 (287)
12 3vkg_A Dynein heavy chain, cyt 79.9 1.6E+02 0.0056 38.7 25.8 48 264-311 2042-2105(3245)
13 3h6l_A Histone-lysine N-methyl 79.8 0.9 3.1E-05 45.3 2.8 40 344-385 63-111 (278)
14 3bo5_A Histone-lysine N-methyl 77.5 1.3 4.6E-05 44.1 3.3 40 345-386 60-121 (290)
15 1dme_A CD6 metallothionein-1; 75.2 1.9 6.3E-05 30.1 2.5 23 357-381 6-28 (28)
16 2r3a_A Histone-lysine N-methyl 72.0 1.5 5E-05 44.1 2.0 38 344-386 78-135 (300)
17 2v71_A Nuclear distribution pr 71.5 74 0.0025 30.5 22.5 52 109-161 15-66 (189)
18 3qh9_A Liprin-beta-2; coiled-c 68.2 16 0.00056 31.0 7.2 41 108-160 23-63 (81)
19 3ope_A Probable histone-lysine 65.3 3.6 0.00012 39.2 3.0 42 343-386 21-68 (222)
20 3ooi_A Histone-lysine N-methyl 64.6 2.8 9.5E-05 40.4 2.1 42 344-386 42-87 (232)
21 1m0j_A Metallothionein MT_NC; 63.2 1.6 5.4E-05 30.6 0.1 15 368-382 12-26 (28)
22 3vp9_A General transcriptional 62.2 36 0.0012 29.5 8.3 72 75-156 12-87 (92)
23 3ghg_A Fibrinogen alpha chain; 60.1 87 0.003 34.5 12.7 20 105-124 51-70 (562)
24 3oja_A Leucine-rich immune mol 58.9 1.6E+02 0.0056 30.1 17.8 67 163-229 411-477 (487)
25 1m1j_B Fibrinogen beta chain; 58.2 1.6E+02 0.0056 31.7 14.4 27 100-126 88-115 (464)
26 1t2y_A Metallothionein, MT; pr 58.2 4.8 0.00016 27.7 1.7 19 347-377 3-21 (26)
27 3na7_A HP0958; flagellar bioge 56.8 1.4E+02 0.0049 28.7 20.6 21 265-285 151-171 (256)
28 3etw_A Adhesin A; antiparallel 55.9 1.1E+02 0.0039 27.4 12.7 25 133-157 71-95 (119)
29 3tnu_A Keratin, type I cytoske 55.3 73 0.0025 28.1 9.5 45 141-186 81-125 (131)
30 1f5n_A Interferon-induced guan 54.5 92 0.0032 34.1 12.0 17 75-91 440-457 (592)
31 1c1g_A Tropomyosin; contractIl 53.3 1.2E+02 0.0042 26.8 29.8 13 29-41 18-30 (284)
32 3a7p_A Autophagy protein 16; c 52.8 62 0.0021 30.3 8.8 66 105-170 69-143 (152)
33 3tnu_B Keratin, type II cytosk 49.7 1.3E+02 0.0046 26.3 11.0 44 142-186 80-123 (129)
34 2i1j_A Moesin; FERM, coiled-co 49.2 17 0.00057 39.6 5.2 23 135-157 333-355 (575)
35 3ol1_A Vimentin; structural ge 48.8 1.4E+02 0.0047 26.1 11.1 15 109-123 18-32 (119)
36 2ocy_A RAB guanine nucleotide 48.4 1.7E+02 0.0059 27.2 13.8 25 205-229 115-139 (154)
37 3na7_A HP0958; flagellar bioge 46.3 2.1E+02 0.0071 27.5 19.9 8 371-378 226-233 (256)
38 3s4r_A Vimentin; alpha-helix, 42.0 32 0.0011 29.2 4.8 22 135-156 47-68 (93)
39 1qjl_A Metallothionein; metal- 41.6 18 0.0006 25.3 2.5 21 360-381 7-27 (28)
40 2e7s_A RAB guanine nucleotide 40.7 88 0.003 28.7 7.8 64 137-200 60-123 (135)
41 3lay_A Zinc resistance-associa 39.4 1.5E+02 0.0053 27.8 9.5 62 105-167 79-143 (175)
42 1uix_A RHO-associated kinase; 39.1 1.2E+02 0.0039 25.2 7.5 41 109-149 9-51 (71)
43 1gs9_A Apolipoprotein E, APOE4 38.7 2.4E+02 0.0081 26.0 10.5 45 104-148 99-143 (165)
44 1s1c_X RHO-associated, coiled- 38.2 99 0.0034 25.6 6.9 41 109-149 11-51 (71)
45 2lua_A Protein MALE-specific l 35.4 26 0.00089 27.6 2.9 36 345-383 5-46 (52)
46 3mq9_A Bone marrow stromal ant 32.0 4.2E+02 0.014 26.9 12.6 18 160-177 402-419 (471)
47 1vcs_A Vesicle transport throu 31.9 1.8E+02 0.0061 24.7 7.9 46 108-157 42-87 (102)
48 2i1j_A Moesin; FERM, coiled-co 31.8 72 0.0025 34.7 6.7 19 109-127 333-351 (575)
49 3tnu_A Keratin, type I cytoske 31.3 2.7E+02 0.0091 24.5 9.2 15 273-287 107-121 (131)
50 1go4_E MAD1 (mitotic arrest de 30.5 54 0.0018 28.7 4.4 62 92-159 13-90 (100)
51 2kak_A EC protein I/II; metall 29.7 32 0.0011 27.1 2.6 13 367-379 35-47 (53)
52 2w83_C C-JUN-amino-terminal ki 29.6 86 0.0029 26.4 5.3 67 90-156 8-77 (77)
53 3tnu_B Keratin, type II cytosk 28.7 2.9E+02 0.01 24.1 10.1 17 272-288 104-120 (129)
54 3ghg_A Fibrinogen alpha chain; 27.2 5.4E+02 0.019 28.5 12.3 16 109-124 62-77 (562)
55 2knp_A Mcocc-1; disulfide-rich 27.2 19 0.00066 25.5 0.8 14 365-378 9-22 (33)
56 2a01_A Apolipoprotein A-I; fou 26.9 1.5E+02 0.0051 28.5 7.4 27 20-46 9-36 (243)
57 2p2u_A HOST-nuclease inhibitor 26.8 1.7E+02 0.0058 27.0 7.4 46 111-160 23-68 (171)
58 3r2p_A Apolipoprotein A-I; amp 26.2 3.8E+02 0.013 24.5 10.4 26 104-129 82-107 (185)
59 1m1j_C Fibrinogen gamma chain; 26.2 6E+02 0.02 26.8 14.4 16 109-124 36-51 (409)
60 3a7p_A Autophagy protein 16; c 25.2 4.2E+02 0.014 24.7 13.0 32 193-224 116-148 (152)
61 1x8y_A Lamin A/C; structural p 24.5 2.8E+02 0.0096 22.9 7.6 46 140-186 31-76 (86)
62 3i00_A HIP-I, huntingtin-inter 24.1 39 0.0013 30.1 2.5 22 25-46 16-37 (120)
63 1y29_A Huwentoxin-X; A double- 23.0 46 0.0016 23.2 2.0 20 362-381 2-28 (28)
64 1deq_A Fibrinogen (alpha chain 20.7 7.7E+02 0.026 26.1 16.6 39 194-232 109-147 (390)
65 3trt_A Vimentin; cytoskeleton, 20.5 3.2E+02 0.011 21.6 10.6 63 136-199 12-75 (77)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.63 E-value=0.9 Score=47.66 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008589 161 QQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLES 230 (560)
Q Consensus 161 mkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~Lek 230 (560)
++++++....+..--+...+++.+++++-+..+.++..|+..-+.+...+++-.+|..+++..++.++++
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333333333344444555555566666667788888888888888888889999988888888863
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.78 E-value=0.64 Score=54.16 Aligned_cols=36 Identities=36% Similarity=0.533 Sum_probs=16.7
Q ss_pred hhhhHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHH
Q 008589 91 DEIEDEEKELEHSSL-QEKLDRELKELDKKLEQKEAE 126 (560)
Q Consensus 91 ~Ei~~~eKE~eh~~l-Q~k~~KeLeEL~kRLqelE~e 126 (560)
.|+..+.++++.+.. -..+.+.+.++..++..++.+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e 893 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE 893 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554332 122334455555555555544
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.69 E-value=12 Score=35.89 Aligned_cols=45 Identities=13% Similarity=0.300 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHhh
Q 008589 262 VTVRVHEVRSEYERQMEERARMANEVARLKEESEQA------NLRRVKKRIS 307 (560)
Q Consensus 262 v~vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~------ni~dlke~~s 307 (560)
+..++..++.-|+..|+.-+.|..+|.. ++.+... -|+|||..+.
T Consensus 128 ~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QRLkdE~rDLk~El~ 178 (189)
T 2v71_A 128 TIMSLEDFEQRLNQAIERNAFLESELDE-KESLLVSVQRLKDEARDLRQELA 178 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC---------------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888888887777777763 2222211 1777776443
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.06 E-value=13 Score=43.53 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKE 124 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE 124 (560)
+.++..+|.+.|+++|
T Consensus 958 ~~~e~~~L~~~l~~le 973 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLR 973 (1080)
T ss_dssp HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.37 E-value=4.5 Score=47.25 Aligned_cols=92 Identities=17% Similarity=0.275 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008589 106 QEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQL 185 (560)
Q Consensus 106 Q~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQL 185 (560)
..+|++++.+|+.||+++|.+..... ..+..+++..+..+++|..++..++ +...|.+.-..--...+.|+..|
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~-~~~~~~~~~~~~e~~~L~~~l~~le-----~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLL-EKMNNLEITYSTETEKLRSDVERLR-----MSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888877775543222 2233334444444444443333332 12222222222223344444455
Q ss_pred hHHhhhhHHHHHHHHHHH
Q 008589 186 KKEGRRNEYEMHKLLALN 203 (560)
Q Consensus 186 KKe~RK~e~Ei~kLea~~ 203 (560)
+++-.+...|...++..+
T Consensus 997 ~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.17 E-value=77 Score=41.56 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=34.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 254 QAIEHELEVT-VRVHEVRSEYERQMEERARMANEVARLKEESEQA 297 (560)
Q Consensus 254 ~WL~~ELEv~-vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~ 297 (560)
.-|..|++.+ ..+..|+.-+..|-.++..+...+..|+...+.+
T Consensus 2059 ~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2059 EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 4455555544 5778888999999999999999999998887755
No 7
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=86.49 E-value=0.41 Score=47.80 Aligned_cols=42 Identities=31% Similarity=0.808 Sum_probs=32.8
Q ss_pred CCccccCCCccccccccccccCC----------------------------------------CCCCCCCCccCccccch
Q 008589 344 GLCCTCSKSSLCKTNKCQCRAAG----------------------------------------GACKASCGCSSTKCSNR 383 (560)
Q Consensus 344 ~~cCsCsk~S~CKt~kC~cra~g----------------------------------------~~Cg~sCgC~~~KCsNR 383 (560)
.++|+|.....|-...|.|.... --|++.|+|. ..|.||
T Consensus 47 ~~gC~C~~~~~C~~~~C~C~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~g~l~~~~~~~~~~i~EC~~~C~C~-~~C~Nr 125 (302)
T 1ml9_A 47 RVGCSCASDEECMYSTCQCLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACS-KDCPNR 125 (302)
T ss_dssp CCCCCCSSTTGGGSTTSGGGTTSCCC-----------CCSSBBCSSTTBTSBCHHHHHHCCCEECCCTTCSSC-TTCTTC
T ss_pred CCCccCcCCCCcCCCCCcChhhccccccccccccccccccccccCCcccceeehhcccCCCCeEecCCCCCCC-CCCCCc
Confidence 37899987567988899996532 1699999998 569999
Q ss_pred hhh
Q 008589 384 EAI 386 (560)
Q Consensus 384 ~~~ 386 (560)
..-
T Consensus 126 ~~q 128 (302)
T 1ml9_A 126 VVE 128 (302)
T ss_dssp HHH
T ss_pred ccc
Confidence 863
No 8
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=86.38 E-value=15 Score=32.69 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 265 RVHEVRSEYERQMEERARMANEVARLKEESEQA 297 (560)
Q Consensus 265 sv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~ 297 (560)
.-.+++.+|-+|.++|+.++.+|..|+.+.+-+
T Consensus 71 ~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 71 AKRDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 346677789999999999999999999987754
No 9
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.02 E-value=21 Score=36.75 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008589 137 VLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVL 183 (560)
Q Consensus 137 KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIa 183 (560)
+...+||....+++.|+-. .-++++.|+++.++.++.+.+-++++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNN-AIRDWDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc-chhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 3444455444444444332 123344444444444433333333333
No 10
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=83.42 E-value=0.6 Score=46.81 Aligned_cols=41 Identities=32% Similarity=0.781 Sum_probs=32.7
Q ss_pred CccccCCCccccc---cccccccCC----------------------CCCCCCCCccCccccchhhh
Q 008589 345 LCCTCSKSSLCKT---NKCQCRAAG----------------------GACKASCGCSSTKCSNREAI 386 (560)
Q Consensus 345 ~cCsCsk~S~CKt---~kC~cra~g----------------------~~Cg~sCgC~~~KCsNR~~~ 386 (560)
.+|+|....-|-. ..|.|.... --|++.|+|.. .|.||..-
T Consensus 67 ~gC~C~~~~~C~~~~~~~C~C~~~~~~~~~~~y~~~g~l~~~~~~~i~EC~~~C~C~~-~C~Nr~~q 132 (299)
T 1mvh_A 67 SGCNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSM-ECPNRVVQ 132 (299)
T ss_dssp CCCCCCCSSSSCTTCTTTCSSSTTCCSSCCCSBCTTSSBCTTCCSEEECCCTTSCSCT-TCTTCTGG
T ss_pred CCCcCcCCCCcCCCCCCCCccccccccccccccCCCCceeecCCCCeEeCCCCCCCCC-CcCCcccc
Confidence 7899986668987 789997432 37999999985 79999963
No 11
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=82.04 E-value=0.5 Score=47.19 Aligned_cols=38 Identities=29% Similarity=0.803 Sum_probs=30.5
Q ss_pred CccccCCCccccccccccccC-----------------------CCCCCCCCCccCccccchhh
Q 008589 345 LCCTCSKSSLCKTNKCQCRAA-----------------------GGACKASCGCSSTKCSNREA 385 (560)
Q Consensus 345 ~cCsCsk~S~CKt~kC~cra~-----------------------g~~Cg~sCgC~~~KCsNR~~ 385 (560)
.+|+|. ..|-+..|.|... ---|++.|+|.. .|.||..
T Consensus 81 ~gC~C~--~~C~~~~C~C~~~~~~~~y~~~g~l~~~~~~~~~~~i~EC~~~C~C~~-~C~Nr~~ 141 (287)
T 3hna_A 81 QYCVCI--DDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWR-NCRNRVV 141 (287)
T ss_dssp CCCCCS--SSSCSTTCHHHHHTSSCCBCTTSCBCTTCCSSSCCCEECCCTTSSSCT-TCSSCSG
T ss_pred CCCcCc--CCCCCCCCcCcccCcccccCCCCcccccccccCCceEEecCCCCCCCC-CCCCccc
Confidence 689997 4698889999852 125999999976 8999985
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.94 E-value=1.6e+02 Score=38.67 Aligned_cols=48 Identities=13% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------hHHHHHHhhhccC
Q 008589 264 VRVHEVRSEYERQMEERARMANEVARLKEESEQAN----------------LRRVKKRISKNGN 311 (560)
Q Consensus 264 vsv~Eae~~LErLmeeRa~La~EL~~Lk~e~e~~n----------------i~dlke~~s~~~~ 311 (560)
-.+.+++..|+..+.+.+.|..++...+..++--. +.+|++++..+++
T Consensus 2042 ~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2042 KSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccH
Confidence 35566777777777777777777776666655332 6666666666655
No 13
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=79.78 E-value=0.9 Score=45.28 Aligned_cols=40 Identities=30% Similarity=0.621 Sum_probs=32.4
Q ss_pred CCccccCCCc---------cccccccccccCCCCCCCCCCccCccccchhh
Q 008589 344 GLCCTCSKSS---------LCKTNKCQCRAAGGACKASCGCSSTKCSNREA 385 (560)
Q Consensus 344 ~~cCsCsk~S---------~CKt~kC~cra~g~~Cg~sCgC~~~KCsNR~~ 385 (560)
..-|.|...+ .|-. -|.||.+---|++.|+|. ..|.||..
T Consensus 63 ~~~C~C~~~~~~~~~~~~~~C~~-~C~nr~~~~EC~~~C~C~-~~C~Nr~~ 111 (278)
T 3h6l_A 63 RMQCECTPLSKDERAQGEIACGE-DCLNRLLMIECSSRCPNG-DYCSNRRF 111 (278)
T ss_dssp --CCCCCCCCHHHHHHTCCSSCT-TCTTGGGTBCCCTTCTTG-GGCSSCTT
T ss_pred cceeeccCCCcccccccCCCCCC-CCCCcceEeccCCCCCcC-CCCCCccc
Confidence 4678887643 7875 599999999999999997 57999985
No 14
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=77.55 E-value=1.3 Score=44.09 Aligned_cols=40 Identities=35% Similarity=0.884 Sum_probs=30.3
Q ss_pred CccccCCCccccccccccccCCC----------------------CCCCCCCccCccccchhhh
Q 008589 345 LCCTCSKSSLCKTNKCQCRAAGG----------------------ACKASCGCSSTKCSNREAI 386 (560)
Q Consensus 345 ~cCsCsk~S~CKt~kC~cra~g~----------------------~Cg~sCgC~~~KCsNR~~~ 386 (560)
.+|+|.. ..|-+..|.|-..+. -|++.|+|. ..|.||..-
T Consensus 60 ~gC~C~~-~~C~~~~C~C~~~~~~y~~~~~l~~~~~~~~~~~~~~EC~~~C~C~-~~C~Nr~~q 121 (290)
T 3bo5_A 60 PGCICVK-TPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCS-DHCRNRVVQ 121 (290)
T ss_dssp CCCCCCS-SCCCTTTCGGGTTSCSBCTTSCBCC-----CCCCCEECCCTTCCSC-TTCTTCCGG
T ss_pred CCCCCCC-CCcCCCCCcchhhcCccCccccccccccccccCCceEeCCCCCCCC-CCCCCeEcc
Confidence 5899976 468788898866542 477889997 589999863
No 15
>1dme_A CD6 metallothionein-1; NMR {Callinectes sapidus} SCOP: g.46.1.1 PDB: 1dmf_A 1j5m_A
Probab=75.24 E-value=1.9 Score=30.09 Aligned_cols=23 Identities=52% Similarity=1.365 Sum_probs=18.9
Q ss_pred ccccccccCCCCCCCCCCccCcccc
Q 008589 357 TNKCQCRAAGGACKASCGCSSTKCS 381 (560)
Q Consensus 357 t~kC~cra~g~~Cg~sCgC~~~KCs 381 (560)
..||+|. -|.|.+||-|++..|+
T Consensus 6 ~dkceC~--eG~CK~GC~ctscrC~ 28 (28)
T 1dme_A 6 NDKCVCQ--EGGCKAGCQCTSCRCS 28 (28)
T ss_dssp TSCCCTT--TTCCCSCCCCTTSCCC
T ss_pred CCeeeec--CCCcccCceecccccC
Confidence 4688885 5789999999998885
No 16
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=71.97 E-value=1.5 Score=44.14 Aligned_cols=38 Identities=34% Similarity=0.920 Sum_probs=26.8
Q ss_pred CCccccCCCccccccccccccC--C------------------CCCCCCCCccCccccchhhh
Q 008589 344 GLCCTCSKSSLCKTNKCQCRAA--G------------------GACKASCGCSSTKCSNREAI 386 (560)
Q Consensus 344 ~~cCsCsk~S~CKt~kC~cra~--g------------------~~Cg~sCgC~~~KCsNR~~~ 386 (560)
..+|.|.. |-...| |... + --|++.|+|.. .|.||..-
T Consensus 78 ~~gC~C~~---C~~~~c-c~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~-~C~Nr~~q 135 (300)
T 2r3a_A 78 TFGCSCTD---CFFQKC-CPAEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGP-DCPNRIVQ 135 (300)
T ss_dssp CCCCCCSS---TTTSSC-HHHHTTSCCSBCTTSCBCSCTTCCEECCCTTSSCCT-TCTTCSGG
T ss_pred CCCcCCcC---CCCCCc-chhhccCccccccCCcEeccCCCcEEeCCCCCCCCC-cCCCcccc
Confidence 47899973 766665 4321 1 26999999986 79999863
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.54 E-value=74 Score=30.55 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHLQ 161 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqLm 161 (560)
+...+.+...++.+++.++..|. ..-+-|..++|..|..++..++.|+.++.
T Consensus 15 wk~~~~~~~q~~~~le~El~EFq-esSrELE~ELE~eL~~~Ek~~~~L~~~~~ 66 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQ-EGSRELEAELEAQLVQAEQRNRDLQADNQ 66 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665553 22355666677777777777777765543
No 18
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=68.22 E-value=16 Score=30.99 Aligned_cols=41 Identities=34% Similarity=0.435 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 108 KLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHL 160 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqL 160 (560)
.+-.++.+|+-|+.++|.| +-+||+||.....||-.|+-+|
T Consensus 23 ~L~qEi~~Lr~kv~elEnE------------rlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENE------------RNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhHHHHHHHHHHH
Confidence 4667899999999999988 8899999988887776665444
No 19
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=65.35 E-value=3.6 Score=39.21 Aligned_cols=42 Identities=26% Similarity=0.733 Sum_probs=33.8
Q ss_pred CCCccccCCC-----ccccccccccccCCCCCCC-CCCccCccccchhhh
Q 008589 343 SGLCCTCSKS-----SLCKTNKCQCRAAGGACKA-SCGCSSTKCSNREAI 386 (560)
Q Consensus 343 ~~~cCsCsk~-----S~CKt~kC~cra~g~~Cg~-sCgC~~~KCsNR~~~ 386 (560)
...-|.|... ..|- .-|.+|++.--|++ .|+|.. .|.||...
T Consensus 21 ~~~~C~C~~~~~~~~~~c~-~~C~nr~~~~EC~~~~C~C~~-~C~Nr~~q 68 (222)
T 3ope_A 21 EATTCNCKKPDDDTRKGCV-DDCLNRMIFAECSPNTCPCGE-QCCNQRIQ 68 (222)
T ss_dssp CCCCCCCCCCSCSSSCSSC-SCCTTGGGTBCCCTTTCTTTT-SCSSCTTT
T ss_pred cCccccCcCCCcCCCCCCc-ccCcCcCeEeEeCCCCCcCCC-CCCCceEe
Confidence 4477888764 3575 68999999999998 799976 79999753
No 20
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=64.63 E-value=2.8 Score=40.37 Aligned_cols=42 Identities=21% Similarity=0.506 Sum_probs=33.4
Q ss_pred CCccccCCC--ccccc-cccccccCCCCCCC-CCCccCccccchhhh
Q 008589 344 GLCCTCSKS--SLCKT-NKCQCRAAGGACKA-SCGCSSTKCSNREAI 386 (560)
Q Consensus 344 ~~cCsCsk~--S~CKt-~kC~cra~g~~Cg~-sCgC~~~KCsNR~~~ 386 (560)
..-|.|... ..|.. ..|-+|.+.--|++ .|+|.. .|.||...
T Consensus 42 ~~~C~C~~~~~~~C~~~~~C~nr~~~~EC~~~~C~c~~-~C~Nr~~q 87 (232)
T 3ooi_A 42 IPRCNCKATDENPCGIDSECINRMLLYECHPTVCPAGG-RCQNQCFS 87 (232)
T ss_dssp SCCCSCCTTSSSTTCTTSCCHHHHTTBCCCTTTCTTGG-GCCCCHHH
T ss_pred CCcccccCCCCCCCCCCCCCcCcCceeEeCCCCCCCCC-CcCCcccc
Confidence 356888654 36874 68999999999999 699975 79999863
No 21
>1m0j_A Metallothionein MT_NC; cadmium thiolate-cluster, metal binding protein; NMR {Notothenia coriiceps} SCOP: g.46.1.1
Probab=63.20 E-value=1.6 Score=30.58 Aligned_cols=15 Identities=33% Similarity=1.092 Sum_probs=11.1
Q ss_pred CCCCCCCccCccccc
Q 008589 368 ACKASCGCSSTKCSN 382 (560)
Q Consensus 368 ~Cg~sCgC~~~KCsN 382 (560)
.||++|-|..-+|+.
T Consensus 12 ~C~~sCkC~~C~Cts 26 (28)
T 1m0j_A 12 NCGGSCTCTNCSCKS 26 (28)
T ss_dssp CCSSSCCSSSCCCTT
T ss_pred cCCCccccCCccCcc
Confidence 378888888877763
No 22
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=62.18 E-value=36 Score=29.45 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=41.9
Q ss_pred cccccccccccccCcchhhhHHH----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Q 008589 75 LNEFSADCDSKVEDISDEIEDEE----KELEHSSLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELE 150 (560)
Q Consensus 75 l~e~~s~~~~~~~~~~~Ei~~~e----KE~eh~~lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le 150 (560)
|+|+...+-.....++.|+.... ++.||...+ --.+++-.+..|-+||.. -.|||++||..|..|.
T Consensus 12 l~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~--Qi~Emq~Ir~tvyeLE~~--------h~kmKq~YEeEI~rLr 81 (92)
T 3vp9_A 12 LNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQ--QLAEMQQIRNTVYERELT--------HRKMKDAYEEEIKHLK 81 (92)
T ss_dssp -----CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH--HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 56665555444444555554332 466665321 123566667777777744 4789999999999999
Q ss_pred HHHHHH
Q 008589 151 QEKKIL 156 (560)
Q Consensus 151 ~ElK~l 156 (560)
.||-..
T Consensus 82 ~eLe~r 87 (92)
T 3vp9_A 82 LGLEQR 87 (92)
T ss_dssp HHHTC-
T ss_pred HHHHHc
Confidence 998543
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.06 E-value=87 Score=34.54 Aligned_cols=20 Identities=5% Similarity=0.308 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 008589 105 LQEKLDRELKELDKKLEQKE 124 (560)
Q Consensus 105 lQ~k~~KeLeEL~kRLqelE 124 (560)
||..|+|.=..+.++|.+|.
T Consensus 51 LQglLdkqErDltkrINELK 70 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLK 70 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHH
Confidence 34444444444444444443
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.93 E-value=1.6e+02 Score=30.08 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 163 KIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLE 229 (560)
Q Consensus 163 kMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~Le 229 (560)
.|..-..++....++.+.|..+.+...-..+.++.+|+..+++++.++.-=.....-|+-+++++-.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 3444455555555556666666666666666667777776666666655333333333444555443
No 25
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=58.16 E-value=1.6e+02 Score=31.65 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=19.5
Q ss_pred Hhhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 008589 100 LEHSS-LQEKLDRELKELDKKLEQKEAE 126 (560)
Q Consensus 100 ~eh~~-lQ~k~~KeLeEL~kRLqelE~e 126 (560)
.++++ .|..+++.|++|..+|.+++..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhh
Confidence 34433 5566888999999999888743
No 26
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=58.15 E-value=4.8 Score=27.73 Aligned_cols=19 Identities=47% Similarity=1.312 Sum_probs=13.1
Q ss_pred cccCCCccccccccccccCCCCCCCCCCccC
Q 008589 347 CTCSKSSLCKTNKCQCRAAGGACKASCGCSS 377 (560)
Q Consensus 347 CsCsk~S~CKt~kC~cra~g~~Cg~sCgC~~ 377 (560)
|.||-.++|. ||++|.|..
T Consensus 3 CgCs~tgtC~------------Cg~~CsC~g 21 (26)
T 1t2y_A 3 CGCSGASSCN------------CGSGCSCSN 21 (26)
T ss_dssp CSCSSTTTCC------------CSSSCCSST
T ss_pred cccCCCcccc------------CCCCccccC
Confidence 6677666663 788888753
No 27
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.84 E-value=1.4e+02 Score=28.69 Aligned_cols=21 Identities=5% Similarity=0.273 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008589 265 RVHEVRSEYERQMEERARMAN 285 (560)
Q Consensus 265 sv~Eae~~LErLmeeRa~La~ 285 (560)
.+.+++..++.+...|+.+..
T Consensus 151 ~~~e~~~e~~~l~~~r~~l~~ 171 (256)
T 3na7_A 151 EVKNIKETQQIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666665
No 28
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=55.95 E-value=1.1e+02 Score=27.36 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=16.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q 008589 133 ADTSVLKQHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 133 ~kl~KlKe~~EkKLs~Le~ElK~lq 157 (560)
..+..+=..|+.-++.|+.+|+.++
T Consensus 71 ~~y~~l~k~Y~~~~keLd~~ik~qe 95 (119)
T 3etw_A 71 SQYQELASKYEDALKKLEAEMEQQK 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555667777777777777665
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.27 E-value=73 Score=28.10 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 008589 141 HYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLK 186 (560)
Q Consensus 141 ~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLK 186 (560)
.|..+|..|+.+|..++..+.+++++=. .--.-|..-+-||+.-+
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq-~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYK-ILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666655422 23344555556665543
No 30
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=54.54 E-value=92 Score=34.13 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=9.0
Q ss_pred cccccccccccc-cCcch
Q 008589 75 LNEFSADCDSKV-EDISD 91 (560)
Q Consensus 75 l~e~~s~~~~~~-~~~~~ 91 (560)
++.+..+|.... ++...
T Consensus 440 ~~~~~~~Y~~~~~kg~~~ 457 (592)
T 1f5n_A 440 LQDLKKKYYEEPRKGIQA 457 (592)
T ss_dssp HHHHHHHHHHSSCCCTTH
T ss_pred HHHHHHHHHHhcCCcccH
Confidence 455556666655 34443
No 31
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=53.28 E-value=1.2e+02 Score=26.84 Aligned_cols=13 Identities=15% Similarity=0.205 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q 008589 29 YVSKIQELEGELL 41 (560)
Q Consensus 29 yv~kIqeLe~El~ 41 (560)
|...+.+|+.+|.
T Consensus 18 ~~~~~~~l~~~l~ 30 (284)
T 1c1g_A 18 ALDRADEAEADKK 30 (284)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 32
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.78 E-value=62 Score=30.27 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc------ccchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 105 LQEKLDRELKELDKKLEQKEAEMKRFT------GADTSVLK---QHYEKKVLELEQEKKILQVHLQQKIKQESEQ 170 (560)
Q Consensus 105 lQ~k~~KeLeEL~kRLqelE~emk~~~------q~kl~KlK---e~~EkKLs~Le~ElK~lqVqLmkkMKEESek 170 (560)
.-..+.+++..++.+|.+++.+++... +..+..|. ...|.++..|+.|=+.|--++|.++-.|+++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~ 143 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEA 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666553221 23344444 2347777777777777777888888888865
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.74 E-value=1.3e+02 Score=26.27 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 008589 142 YEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLK 186 (560)
Q Consensus 142 ~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLK 186 (560)
|..+|..|+.+|..++..+.+++++=. .--.-|..-+-||+.-+
T Consensus 80 ~q~~i~~lE~eL~~~r~e~~~ql~EYq-~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDMARLLREYQ-ELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 444555666666666666655554422 23334555556665544
No 34
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.24 E-value=17 Score=39.61 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 008589 135 TSVLKQHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 135 l~KlKe~~EkKLs~Le~ElK~lq 157 (560)
+.+-+.+++.+|..++.|.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~ 355 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERSQ 355 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666665554
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=48.82 E-value=1.4e+02 Score=26.15 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQK 123 (560)
Q Consensus 109 ~~KeLeEL~kRLqel 123 (560)
|..++.+|+++|..+
T Consensus 18 ye~~I~~LR~qid~~ 32 (119)
T 3ol1_A 18 YEEEMRELRRQVDQL 32 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 36
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.40 E-value=1.7e+02 Score=27.21 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 205 RQKMVLQRKTEEASMATKRLKELLE 229 (560)
Q Consensus 205 kQ~~VLKRKtEEA~AA~KRLKe~Le 229 (560)
++...|++...|+......|.+.|.
T Consensus 115 ~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555443
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.32 E-value=2.1e+02 Score=27.52 Aligned_cols=8 Identities=25% Similarity=0.355 Sum_probs=4.2
Q ss_pred CCCCccCc
Q 008589 371 ASCGCSST 378 (560)
Q Consensus 371 ~sCgC~~~ 378 (560)
|.||..=.
T Consensus 226 p~CgRIL~ 233 (256)
T 3na7_A 226 PYCGRILY 233 (256)
T ss_dssp TTTCCEEE
T ss_pred CCCCeeEE
Confidence 45665544
No 38
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.99 E-value=32 Score=29.18 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 008589 135 TSVLKQHYEKKVLELEQEKKIL 156 (560)
Q Consensus 135 l~KlKe~~EkKLs~Le~ElK~l 156 (560)
...+...|+..|..|...|..+
T Consensus 47 ~~~~~~~ye~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 47 KSRLGDLYEEEMRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888777554
No 39
>1qjl_A Metallothionein; metal-binding, detoxification, radical scavenger; NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1
Probab=41.61 E-value=18 Score=25.32 Aligned_cols=21 Identities=33% Similarity=1.222 Sum_probs=13.7
Q ss_pred cccccCCCCCCCCCCccCcccc
Q 008589 360 CQCRAAGGACKASCGCSSTKCS 381 (560)
Q Consensus 360 C~cra~g~~Cg~sCgC~~~KCs 381 (560)
|+|- .|=.||++|+|.+-+|.
T Consensus 7 c~cg-~~CkCgs~C~C~~C~C~ 27 (28)
T 1qjl_A 7 CKCA-NGCKCGSGCSCTEGNCA 27 (28)
T ss_dssp CCCC-TTCCTTSCCCCBTTBCC
T ss_pred cccC-CCCccCCCcccCCcccc
Confidence 4443 44567888888777764
No 40
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.71 E-value=88 Score=28.68 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHHH
Q 008589 137 VLKQHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKLL 200 (560)
Q Consensus 137 KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kLe 200 (560)
..+...|.....+++|+-.|=+.|.-..-.=...-|.....-++.+.+|+.+..-.+.-|..|+
T Consensus 60 ~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq 123 (135)
T 2e7s_A 60 ELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLT 123 (135)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888877776543333333344444445555566555554444444443
No 41
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=39.37 E-value=1.5e+02 Score=27.77 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc-cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 105 LQEKLDRELKELDKKLEQKEAEMKRF-TG--ADTSVLKQHYEKKVLELEQEKKILQVHLQQKIKQE 167 (560)
Q Consensus 105 lQ~k~~KeLeEL~kRLqelE~emk~~-~q--~kl~KlKe~~EkKLs~Le~ElK~lqVqLmkkMKEE 167 (560)
+.+++..+..+++..|..+..||... .. .+-.+++ .-..+|.+|+.++...+++...+|+.|
T Consensus 79 I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~-aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 79 IYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKIN-AVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566777788888887776332 22 2223332 224456677777777777777777544
No 42
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=39.09 E-value=1.2e+02 Score=25.24 Aligned_cols=41 Identities=27% Similarity=0.536 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc--chHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTGA--DTSVLKQHYEKKVLEL 149 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q~--kl~KlKe~~EkKLs~L 149 (560)
+.++.+|+..+|+..+.++...... .+..++..|+++|...
T Consensus 9 l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E 51 (71)
T 1uix_A 9 LANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTE 51 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776665333222 2447777787777653
No 43
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=38.73 E-value=2.4e+02 Score=26.03 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Q 008589 104 SLQEKLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLE 148 (560)
Q Consensus 104 ~lQ~k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~ 148 (560)
.|+.+|.+.+++++.+|...=.++...-...+-.+|++..--+.+
T Consensus 99 ~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~ee 143 (165)
T 1gs9_A 99 AAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRK 143 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999999998887776655445555555544433333
No 44
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=38.20 E-value=99 Score=25.61 Aligned_cols=41 Identities=34% Similarity=0.399 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLEL 149 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~L 149 (560)
+.++.+++..+|+..+.++.......+..++..|+++|...
T Consensus 11 l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E 51 (71)
T 1s1c_X 11 LRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTE 51 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888877776654444445557777787777643
No 45
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=35.42 E-value=26 Score=27.61 Aligned_cols=36 Identities=28% Similarity=0.937 Sum_probs=29.1
Q ss_pred Ccccc------CCCccccccccccccCCCCCCCCCCccCccccch
Q 008589 345 LCCTC------SKSSLCKTNKCQCRAAGGACKASCGCSSTKCSNR 383 (560)
Q Consensus 345 ~cCsC------sk~S~CKt~kC~cra~g~~Cg~sCgC~~~KCsNR 383 (560)
-+|.| ..+-.|..+-|.|-..|.+|- .|.|.. |-|-
T Consensus 5 ~~CrCG~~~~~~~~~TC~~~RCpCY~~~~sC~-~C~C~G--CkNP 46 (52)
T 2lua_A 5 PKCRCGISGSSNTLTTCRNSRCPCYKSYNSCA-GCHCVG--CKNP 46 (52)
T ss_dssp CCCCBTTBSCCCSSSTTTSTTCHHHHTTCCCS-SCCCSS--CCCS
T ss_pred cccccCcccCCCCceeEcCCccceecCCCccC-CCEecC--cCCC
Confidence 46888 445579999999999999996 699985 7664
No 46
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.04 E-value=4.2e+02 Score=26.90 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008589 160 LQQKIKQESEQFRMWKAS 177 (560)
Q Consensus 160 LmkkMKEESekFR~wk~~ 177 (560)
|++|+-+-...|.+.+.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 566666666666655543
No 47
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.88 E-value=1.8e+02 Score=24.68 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Q 008589 108 KLDRELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQ 157 (560)
Q Consensus 108 k~~KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lq 157 (560)
..+..|.|...-|++++-|....+.+ .|..|-.||..-..+|.+++
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p~~----~R~~~~~klr~Yk~dL~~lk 87 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIPPQ----SRGMYSNRMRSYKQEMGKLE 87 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTT----THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH----hHHHHHHHHHHHHHHHHHHH
Confidence 46678888888898888776555422 24444444444444444443
No 48
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=31.77 E-value=72 Score=34.69 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008589 109 LDRELKELDKKLEQKEAEM 127 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE~em 127 (560)
++++..|+..||.+++.++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~ 351 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEM 351 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 4455566666666666554
No 49
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.26 E-value=2.7e+02 Score=24.45 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 008589 273 YERQMEERARMANEV 287 (560)
Q Consensus 273 LErLmeeRa~La~EL 287 (560)
|+.||.-.-.|.-||
T Consensus 107 Yq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 107 YKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 50
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.50 E-value=54 Score=28.69 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=41.2
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh------ccccc----------hHHHHHHHHHHHHHHHHHHHH
Q 008589 92 EIEDEEKELEHSSLQEKLDRELKELDKKLEQKEAEMKR------FTGAD----------TSVLKQHYEKKVLELEQEKKI 155 (560)
Q Consensus 92 Ei~~~eKE~eh~~lQ~k~~KeLeEL~kRLqelE~emk~------~~q~k----------l~KlKe~~EkKLs~Le~ElK~ 155 (560)
+++.+.++++ .+..+-..|++++..||.++.. ++..+ ..-..+..+..+..|+.|+..
T Consensus 13 ~~~~lr~ei~------~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~er 86 (100)
T 1go4_E 13 EADTLRLKVE------ELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECER 86 (100)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665 3556677888888888888632 22222 233345668889999999988
Q ss_pred HHHH
Q 008589 156 LQVH 159 (560)
Q Consensus 156 lqVq 159 (560)
|+-+
T Consensus 87 Lr~~ 90 (100)
T 1go4_E 87 LRGL 90 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8744
No 51
>2kak_A EC protein I/II; metallothionein, solution structure, wheat EC-1, Zn binding, metal-binding, metal-thiolate cluster, zinc; NMR {Triticum aestivum}
Probab=29.73 E-value=32 Score=27.13 Aligned_cols=13 Identities=38% Similarity=0.976 Sum_probs=9.7
Q ss_pred CCCCCCCCccCcc
Q 008589 367 GACKASCGCSSTK 379 (560)
Q Consensus 367 ~~Cg~sCgC~~~K 379 (560)
=.||++|.|..--
T Consensus 35 C~CG~~C~CasC~ 47 (53)
T 2kak_A 35 CSCGAACNCASCG 47 (53)
T ss_dssp CCCCSSCCCHHHH
T ss_pred cccCCCccccccc
Confidence 4699999997533
No 52
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.55 E-value=86 Score=26.44 Aligned_cols=67 Identities=21% Similarity=0.146 Sum_probs=29.7
Q ss_pred chhhhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHhhhc--cccchHHHHHHHHHHHHHHHHHHHHH
Q 008589 90 SDEIEDEEKELEHSS-LQEKLDRELKELDKKLEQKEAEMKRF--TGADTSVLKQHYEKKVLELEQEKKIL 156 (560)
Q Consensus 90 ~~Ei~~~eKE~eh~~-lQ~k~~KeLeEL~kRLqelE~emk~~--~q~kl~KlKe~~EkKLs~Le~ElK~l 156 (560)
+.||+.+-+|-..++ .++.++=-=..|=.|+.+|-.+...+ .-..+...+.+++.++.+|++|+|++
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr~ 77 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345655555544433 33334433345555666555543222 22345666788899999999998763
No 53
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.70 E-value=2.9e+02 Score=24.05 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008589 272 EYERQMEERARMANEVA 288 (560)
Q Consensus 272 ~LErLmeeRa~La~EL~ 288 (560)
.|+.||.-.-.|.-||+
T Consensus 104 EYq~LlnvKl~Ld~EIa 120 (129)
T 3tnu_B 104 EYQELMNTKLALDVEIA 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444333433333
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.18 E-value=5.4e+02 Score=28.45 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKE 124 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE 124 (560)
+.+.+++|+.+|.++.
T Consensus 62 ltkrINELKnqLEdls 77 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566777777776663
No 55
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=27.18 E-value=19 Score=25.49 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.8
Q ss_pred CCCCCCCCCCccCc
Q 008589 365 AGGACKASCGCSST 378 (560)
Q Consensus 365 ~g~~Cg~sCgC~~~ 378 (560)
..-+||.+|.|-++
T Consensus 9 lfrscgggcrcwpt 22 (33)
T 2knp_A 9 LFRSCGGGCRCWPT 22 (33)
T ss_dssp TTCCCCSSCCEEEC
T ss_pred eeeccCCceeeccc
Confidence 56799999999775
No 56
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=26.90 E-value=1.5e+02 Score=28.51 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=19.0
Q ss_pred cchhhHHHHHHHHHHHHHHHH-hhhhhc
Q 008589 20 NQDVDLLKNYVSKIQELEGEL-LRVKST 46 (560)
Q Consensus 20 ~q~~~l~k~yv~kIqeLe~El-~~~k~~ 46 (560)
++-.+.+..||+.|....-+. .+++.+
T Consensus 9 e~v~~~~~~Y~~q~~~sa~~~~~~~~~s 36 (243)
T 2a01_A 9 DRVKDLATVYVDVLKDSGRDYVSQFEGS 36 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566778889999999885443 445444
No 57
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=26.76 E-value=1.7e+02 Score=27.05 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008589 111 RELKELDKKLEQKEAEMKRFTGADTSVLKQHYEKKVLELEQEKKILQVHL 160 (560)
Q Consensus 111 KeLeEL~kRLqelE~emk~~~q~kl~KlKe~~EkKLs~Le~ElK~lqVqL 160 (560)
+++.++++.|..+++.|.. .+..+++.|...+..|...++.|+-.|
T Consensus 23 r~ia~l~r~~~~i~~~~n~----eI~~ik~~~~~~~~~l~~~i~~l~~~l 68 (171)
T 2p2u_A 23 AEIATIDRKVGEIEAQMNE----AIDAAKARASQKSAPLLARRKELEDGV 68 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888877643 678888888888888888887776433
No 58
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=26.22 E-value=3.8e+02 Score=24.51 Aligned_cols=26 Identities=15% Similarity=0.488 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 104 SLQEKLDRELKELDKKLEQKEAEMKR 129 (560)
Q Consensus 104 ~lQ~k~~KeLeEL~kRLqelE~emk~ 129 (560)
.|+..+.+.+++++.+|.-.=.++..
T Consensus 82 ~Lr~~l~kdlee~r~~l~P~~~e~~~ 107 (185)
T 3r2p_A 82 GLRQEMSKDLEEVKAKVQPYLDDFQK 107 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 37778888888888888777655543
No 59
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.18 E-value=6e+02 Score=26.79 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 008589 109 LDRELKELDKKLEQKE 124 (560)
Q Consensus 109 ~~KeLeEL~kRLqelE 124 (560)
+++.|.+|...|++++
T Consensus 36 V~~~l~~LE~~l~els 51 (409)
T 1m1j_C 36 TDGELLEIEGLLQQAT 51 (409)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 5555555555555554
No 60
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.16 E-value=4.2e+02 Score=24.71 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 008589 193 EYEMHKLLALNQ-RQKMVLQRKTEEASMATKRL 224 (560)
Q Consensus 193 e~Ei~kLea~~~-kQ~~VLKRKtEEA~AA~KRL 224 (560)
+-.+.+|+..+. -=+..+++|..||.+.|.++
T Consensus 116 E~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~an 148 (152)
T 3a7p_A 116 QQKLSDLKKEHSQLVARWLKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444332 24456777788887776654
No 61
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=24.52 E-value=2.8e+02 Score=22.91 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 008589 140 QHYEKKVLELEQEKKILQVHLQQKIKQESEQFRMWKASREKEVLQLK 186 (560)
Q Consensus 140 e~~EkKLs~Le~ElK~lqVqLmkkMKEESekFR~wk~~reKEIaQLK 186 (560)
+.|..+|..++.++..++..+.+++++= ...-.-|..-+-||+.-+
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EY-q~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHH
Confidence 4455566666666666666666655432 333344555555665544
No 62
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.06 E-value=39 Score=30.15 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q 008589 25 LLKNYVSKIQELEGELLRVKST 46 (560)
Q Consensus 25 l~k~yv~kIqeLe~El~~~k~~ 46 (560)
++-..-..|..|-+||..++.-
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666544
No 63
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=22.99 E-value=46 Score=23.18 Aligned_cols=20 Identities=45% Similarity=1.228 Sum_probs=12.0
Q ss_pred cccCCCCC------CCCCC-ccCcccc
Q 008589 362 CRAAGGAC------KASCG-CSSTKCS 381 (560)
Q Consensus 362 cra~g~~C------g~sCg-C~~~KCs 381 (560)
|-..|..| -|.|| |..+|||
T Consensus 2 clP~GKpC~~~~~riPCCG~Cs~nkCt 28 (28)
T 1y29_A 2 CLPPGKPCYGATQKIPCCGVCSHNKCT 28 (28)
T ss_dssp CBCTTCCCCTTCCSCCBSSCBSSSCBC
T ss_pred CcCCCCcccCCccccccccccccCccC
Confidence 44455555 24554 7888886
No 64
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.73 E-value=7.7e+02 Score=26.13 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008589 194 YEMHKLLALNQRQKMVLQRKTEEASMATKRLKELLESRK 232 (560)
Q Consensus 194 ~Ei~kLea~~~kQ~~VLKRKtEEA~AA~KRLKe~LekRK 232 (560)
+-+-.+-..-++|-.+||+++.+-..-.++|+..|..+.
T Consensus 109 n~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~ 147 (390)
T 1deq_A 109 NTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQL 147 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444555556666666666665566655554433
No 65
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.49 E-value=3.2e+02 Score=21.55 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHhhhhHHHHHHH
Q 008589 136 SVLKQHYEKKVLELEQEKKIL-QVHLQQKIKQESEQFRMWKASREKEVLQLKKEGRRNEYEMHKL 199 (560)
Q Consensus 136 ~KlKe~~EkKLs~Le~ElK~l-qVqLmkkMKEESekFR~wk~~reKEIaQLKKe~RK~e~Ei~kL 199 (560)
.-|+.+||.-...-..|+... +.+ +..+...+.++..--....-||..|+..-...+.+|..|
T Consensus 12 ~eiRaQYE~ia~knr~EaE~~y~~k-~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 12 RDVRQQYESVAAKNLQEAEEWYKSK-FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555444332 111 123334444443333333445555555544444444433
Done!