Query 008590
Match_columns 560
No_of_seqs 303 out of 3423
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 14:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 100.0 1.1E-79 2.4E-84 645.7 45.0 491 53-559 1-497 (951)
2 PRK10671 copA copper exporting 100.0 2.2E-56 4.8E-61 503.6 44.0 406 128-559 3-441 (834)
3 COG2217 ZntA Cation transport 100.0 6.3E-57 1.4E-61 484.3 36.0 326 203-559 3-330 (713)
4 PRK11033 zntA zinc/cadmium/mer 100.0 2E-44 4.4E-49 398.9 33.2 309 201-559 52-361 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 2.9E-40 6.3E-45 356.3 23.3 209 346-559 1-210 (562)
6 TIGR01512 ATPase-IB2_Cd heavy 100.0 1.6E-31 3.4E-36 287.5 19.2 173 365-559 1-173 (536)
7 TIGR01525 ATPase-IB_hvy heavy 100.0 2.9E-31 6.4E-36 287.2 19.3 173 365-559 1-174 (556)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 7.7E-29 1.7E-33 275.7 17.4 154 400-559 57-211 (755)
9 TIGR01497 kdpB K+-transporting 100.0 3.2E-28 6.9E-33 262.1 19.8 158 396-558 63-226 (675)
10 PRK01122 potassium-transportin 100.0 3.8E-28 8.3E-33 262.1 19.8 154 400-558 68-225 (679)
11 PRK14010 potassium-transportin 100.0 3.8E-28 8.2E-33 261.9 19.6 148 404-556 72-223 (673)
12 PRK10517 magnesium-transportin 100.0 1.1E-27 2.5E-32 269.7 19.4 156 400-558 124-296 (902)
13 TIGR01524 ATPase-IIIB_Mg magne 99.9 6.7E-27 1.5E-31 263.6 18.8 155 398-559 88-262 (867)
14 TIGR01522 ATPase-IIA2_Ca golgi 99.9 1E-26 2.3E-31 263.5 17.6 153 401-559 83-250 (884)
15 PF00122 E1-E2_ATPase: E1-E2 A 99.9 2.4E-26 5.2E-31 222.0 14.2 151 403-559 1-158 (230)
16 PRK15122 magnesium-transportin 99.9 1.5E-25 3.3E-30 252.9 18.6 157 398-558 111-294 (903)
17 TIGR01106 ATPase-IIC_X-K sodiu 99.9 1E-24 2.2E-29 249.5 20.2 157 397-559 103-270 (997)
18 TIGR01116 ATPase-IIA1_Ca sarco 99.9 6.8E-25 1.5E-29 249.3 18.5 155 398-558 36-204 (917)
19 TIGR01523 ATPase-IID_K-Na pota 99.9 6.2E-25 1.3E-29 250.8 17.9 155 398-558 81-286 (1053)
20 TIGR01517 ATPase-IIB_Ca plasma 99.9 1.9E-24 4E-29 246.7 19.7 153 400-559 130-286 (941)
21 TIGR01494 ATPase_P-type ATPase 99.9 1.2E-24 2.5E-29 233.6 12.1 148 405-559 3-153 (499)
22 KOG0202 Ca2+ transporting ATPa 99.9 7.9E-25 1.7E-29 229.3 9.5 157 397-559 77-248 (972)
23 KOG0205 Plasma membrane H+-tra 99.9 1.2E-23 2.6E-28 213.8 9.8 156 396-558 95-251 (942)
24 TIGR01657 P-ATPase-V P-type AT 99.9 1.4E-22 3E-27 233.6 17.2 156 396-558 191-373 (1054)
25 COG0474 MgtA Cation transport 99.9 5E-22 1.1E-26 224.8 17.7 151 402-558 107-272 (917)
26 KOG0204 Calcium transporting A 99.9 2.3E-22 5E-27 210.8 11.1 156 393-556 178-338 (1034)
27 COG2216 KdpB High-affinity K+ 99.8 8.6E-21 1.9E-25 189.1 11.7 195 350-551 16-218 (681)
28 KOG0208 Cation transport ATPas 99.8 1.4E-17 2.9E-22 177.8 16.2 168 375-554 196-389 (1140)
29 TIGR01652 ATPase-Plipid phosph 99.7 2.9E-16 6.3E-21 181.9 13.5 147 396-557 52-253 (1057)
30 KOG0203 Na+/K+ ATPase, alpha s 99.7 3.7E-17 8E-22 171.9 3.6 184 366-559 97-292 (1019)
31 KOG0207 Cation transport ATPas 99.6 5.9E-15 1.3E-19 157.7 15.6 144 47-195 70-213 (951)
32 PLN03190 aminophospholipid tra 99.6 3E-14 6.6E-19 164.1 15.6 147 396-557 138-335 (1178)
33 KOG0209 P-type ATPase [Inorgan 99.5 4.7E-14 1E-18 148.0 10.3 157 372-542 196-387 (1160)
34 PF00403 HMA: Heavy-metal-asso 99.3 1.2E-11 2.6E-16 92.8 8.6 62 131-192 1-62 (62)
35 PRK10671 copA copper exporting 99.2 1.1E-10 2.4E-15 132.9 16.8 142 46-195 3-163 (834)
36 COG2608 CopZ Copper chaperone 99.2 8.8E-11 1.9E-15 90.1 9.0 68 128-195 2-69 (71)
37 PF00403 HMA: Heavy-metal-asso 99.2 1E-10 2.2E-15 87.7 8.9 62 49-110 1-62 (62)
38 COG2608 CopZ Copper chaperone 99.2 1.8E-10 4E-15 88.3 9.0 68 45-112 1-68 (71)
39 KOG0210 P-type ATPase [Inorgan 98.6 1.2E-06 2.6E-11 91.7 14.5 123 395-529 129-303 (1051)
40 COG2217 ZntA Cation transport 98.1 8E-06 1.7E-10 89.7 7.8 65 129-194 3-68 (713)
41 TIGR00003 copper ion binding p 97.7 0.0003 6.5E-09 51.6 8.6 65 129-193 3-67 (68)
42 TIGR00003 copper ion binding p 97.7 0.00038 8.1E-09 51.1 9.0 67 45-111 1-67 (68)
43 KOG0206 P-type ATPase [General 97.6 0.00028 6E-09 80.6 10.8 143 400-556 86-281 (1151)
44 KOG4656 Copper chaperone for s 97.6 0.00025 5.4E-09 63.7 7.9 66 44-113 5-70 (247)
45 KOG4656 Copper chaperone for s 97.4 0.00056 1.2E-08 61.5 7.4 65 128-196 7-71 (247)
46 PLN02957 copper, zinc superoxi 97.4 0.0011 2.4E-08 63.8 9.7 69 128-200 6-74 (238)
47 PRK11033 zntA zinc/cadmium/mer 97.2 0.0013 2.8E-08 74.2 9.8 68 44-113 51-118 (741)
48 PLN02957 copper, zinc superoxi 97.0 0.0033 7.2E-08 60.5 9.2 67 46-116 6-72 (238)
49 KOG1603 Copper chaperone [Inor 97.0 0.002 4.3E-08 49.6 5.9 53 135-190 11-63 (73)
50 KOG1603 Copper chaperone [Inor 97.0 0.003 6.5E-08 48.6 6.9 56 50-108 8-63 (73)
51 TIGR02052 MerP mercuric transp 92.9 1.1 2.3E-05 35.2 9.3 66 129-194 24-89 (92)
52 TIGR02052 MerP mercuric transp 92.3 1.4 3E-05 34.5 9.2 65 47-111 24-88 (92)
53 PF00873 ACR_tran: AcrB/AcrD/A 91.7 18 0.00039 43.0 21.2 165 47-212 44-234 (1021)
54 cd00371 HMA Heavy-metal-associ 86.2 6.1 0.00013 25.7 7.7 58 133-191 3-60 (63)
55 PRK09577 multidrug efflux prot 84.5 97 0.0021 36.9 22.3 145 47-192 44-212 (1032)
56 PRK14054 methionine sulfoxide 82.2 2.9 6.2E-05 37.9 5.3 49 215-263 11-78 (172)
57 PRK14054 methionine sulfoxide 81.5 3.1 6.7E-05 37.7 5.3 50 140-189 10-78 (172)
58 PRK10555 aminoglycoside/multid 81.3 1.3E+02 0.0027 36.0 22.0 128 61-189 62-210 (1037)
59 PRK13748 putative mercuric red 80.2 7.5 0.00016 42.7 9.0 66 131-197 3-68 (561)
60 KOG4383 Uncharacterized conser 79.4 6.3 0.00014 42.7 7.4 37 444-483 162-198 (1354)
61 cd00371 HMA Heavy-metal-associ 79.2 14 0.00031 23.8 7.8 41 51-91 3-43 (63)
62 PF01206 TusA: Sulfurtransfera 78.2 20 0.00043 26.8 8.2 56 131-196 2-57 (70)
63 PRK13748 putative mercuric red 77.3 9.9 0.00022 41.7 8.8 65 49-114 3-67 (561)
64 PRK05528 methionine sulfoxide 76.3 6.2 0.00014 35.1 5.5 49 215-263 9-71 (156)
65 PF01206 TusA: Sulfurtransfera 75.5 9.8 0.00021 28.6 5.8 55 49-113 2-56 (70)
66 PRK11018 hypothetical protein; 74.4 35 0.00076 26.4 8.7 69 129-208 8-76 (78)
67 PRK05528 methionine sulfoxide 74.3 7.8 0.00017 34.5 5.6 49 140-188 8-70 (156)
68 PRK10614 multidrug efflux syst 74.2 1.7E+02 0.0038 34.8 18.4 130 60-189 578-730 (1025)
69 PRK13014 methionine sulfoxide 73.8 5.4 0.00012 36.6 4.6 49 215-263 16-83 (186)
70 PRK00058 methionine sulfoxide 73.3 6 0.00013 37.1 4.8 49 215-263 53-120 (213)
71 PRK00058 methionine sulfoxide 72.9 6.5 0.00014 36.8 4.9 49 140-188 52-119 (213)
72 COG1888 Uncharacterized protei 72.7 23 0.00049 28.0 6.9 68 127-194 5-77 (97)
73 COG0225 MsrA Peptide methionin 72.4 6.8 0.00015 35.2 4.7 49 215-263 14-81 (174)
74 TIGR00401 msrA methionine-S-su 71.9 8.2 0.00018 34.1 5.1 49 215-263 8-75 (149)
75 PF11491 DUF3213: Protein of u 71.5 9.6 0.00021 29.5 4.6 56 210-265 6-61 (88)
76 PRK13014 methionine sulfoxide 70.5 7.1 0.00015 35.8 4.5 49 140-188 15-82 (186)
77 TIGR00915 2A0602 The (Largely 69.1 2.6E+02 0.0055 33.5 25.8 141 47-189 44-210 (1044)
78 PF01625 PMSR: Peptide methion 66.0 16 0.00034 32.6 5.7 50 140-189 7-75 (155)
79 PF01625 PMSR: Peptide methion 64.9 15 0.00032 32.8 5.3 50 215-264 8-76 (155)
80 PF11491 DUF3213: Protein of u 64.2 11 0.00023 29.2 3.6 52 143-194 13-64 (88)
81 PRK10555 aminoglycoside/multid 64.0 85 0.0018 37.4 13.0 119 143-262 62-209 (1037)
82 cd03421 SirA_like_N SirA_like_ 63.6 58 0.0012 24.1 7.8 55 132-197 2-56 (67)
83 COG1888 Uncharacterized protei 62.9 55 0.0012 25.9 7.3 71 44-114 4-79 (97)
84 cd03423 SirA SirA (also known 62.8 62 0.0013 24.2 8.0 56 132-197 2-57 (69)
85 PRK11018 hypothetical protein; 62.6 34 0.00074 26.4 6.4 56 48-113 9-64 (78)
86 PRK10614 multidrug efflux syst 62.6 3.3E+02 0.0072 32.5 24.6 144 45-189 44-211 (1025)
87 PF15584 Imm44: Immunity prote 62.5 4.6 9.9E-05 31.9 1.4 19 461-479 13-31 (94)
88 COG0841 AcrB Cation/multidrug 62.0 1E+02 0.0023 36.4 12.9 119 143-262 63-208 (1009)
89 cd03422 YedF YedF is a bacteri 61.2 67 0.0015 24.0 7.7 56 132-197 2-57 (69)
90 PRK15127 multidrug efflux syst 60.3 3.6E+02 0.0079 32.2 22.9 128 61-189 62-210 (1049)
91 COG0225 MsrA Peptide methionin 59.2 19 0.00041 32.4 4.9 50 140-189 13-81 (174)
92 PRK10503 multidrug efflux syst 58.8 3.8E+02 0.0083 32.0 25.0 142 46-189 54-220 (1040)
93 cd03420 SirA_RHOD_Pry_redox Si 58.7 75 0.0016 23.8 7.9 56 132-197 2-57 (69)
94 cd03420 SirA_RHOD_Pry_redox Si 58.6 31 0.00067 25.9 5.4 54 50-113 2-55 (69)
95 TIGR00401 msrA methionine-S-su 56.6 28 0.00062 30.7 5.6 49 140-188 7-74 (149)
96 PRK05550 bifunctional methioni 55.8 21 0.00045 35.2 5.0 49 215-263 135-202 (283)
97 PRK09579 multidrug efflux prot 55.0 4.3E+02 0.0094 31.5 16.7 137 59-195 575-735 (1017)
98 PF02680 DUF211: Uncharacteriz 54.1 49 0.0011 26.6 5.9 67 127-194 4-75 (95)
99 PRK05550 bifunctional methioni 53.6 24 0.00051 34.7 5.0 49 140-188 134-201 (283)
100 cd03423 SirA SirA (also known 52.5 53 0.0011 24.6 5.8 54 50-113 2-55 (69)
101 PRK09577 multidrug efflux prot 52.5 1.9E+02 0.004 34.6 13.2 120 143-263 62-209 (1032)
102 PHA02669 hypothetical protein; 52.2 33 0.00071 30.2 5.1 49 365-432 1-50 (210)
103 cd00291 SirA_YedF_YeeD SirA, Y 52.1 93 0.002 22.9 8.1 56 132-197 2-57 (69)
104 COG4325 Predicted membrane pro 51.8 2.4E+02 0.0052 29.0 11.6 16 465-480 261-276 (464)
105 cd03422 YedF YedF is a bacteri 51.4 46 0.001 24.9 5.4 53 51-113 3-55 (69)
106 PRK15127 multidrug efflux syst 51.1 1.6E+02 0.0035 35.2 12.4 119 143-262 62-209 (1049)
107 COG2177 FtsX Cell division pro 49.9 2.8E+02 0.006 27.7 22.0 39 140-192 71-109 (297)
108 COG0425 SirA Predicted redox p 48.9 83 0.0018 24.4 6.5 55 47-111 5-60 (78)
109 PRK00299 sulfur transfer prote 48.7 85 0.0018 24.4 6.6 55 48-112 10-64 (81)
110 PRK10503 multidrug efflux syst 48.1 5.6E+02 0.012 30.7 19.3 131 59-189 587-744 (1040)
111 PRK09579 multidrug efflux prot 48.1 5.5E+02 0.012 30.6 25.6 127 61-189 64-210 (1017)
112 cd03421 SirA_like_N SirA_like_ 47.4 50 0.0011 24.4 5.0 52 50-112 2-53 (67)
113 PF06638 Strabismus: Strabismu 47.3 3.3E+02 0.0072 29.1 12.3 22 426-447 221-242 (505)
114 KOG1635 Peptide methionine sul 47.2 40 0.00086 30.2 4.9 50 215-264 32-100 (191)
115 COG4669 EscJ Type III secretor 46.3 40 0.00087 32.0 5.1 107 153-264 42-175 (246)
116 cd00291 SirA_YedF_YeeD SirA, Y 44.1 77 0.0017 23.3 5.7 54 50-113 2-55 (69)
117 PF00873 ACR_tran: AcrB/AcrD/A 42.8 6.5E+02 0.014 30.0 21.8 132 58-189 577-742 (1021)
118 TIGR00914 2A0601 heavy metal e 41.8 6.9E+02 0.015 29.9 19.8 61 129-189 683-753 (1051)
119 PF01455 HupF_HypC: HupF/HypC 41.2 55 0.0012 24.6 4.2 22 450-471 26-50 (68)
120 PF10173 Mit_KHE1: Mitochondri 39.5 81 0.0018 29.1 6.0 53 241-313 104-156 (187)
121 COG4004 Uncharacterized protei 37.7 64 0.0014 25.6 4.2 47 177-246 12-58 (96)
122 PRK11152 ilvM acetolactate syn 37.5 1.9E+02 0.0041 22.3 7.2 69 87-161 7-75 (76)
123 PRK10553 assembly protein for 37.3 2E+02 0.0044 22.8 7.1 43 143-187 19-61 (87)
124 COG4669 EscJ Type III secretor 36.7 68 0.0015 30.5 5.0 81 72-162 43-130 (246)
125 COG0425 SirA Predicted redox p 36.0 2E+02 0.0044 22.2 8.5 59 129-197 5-64 (78)
126 TIGR00739 yajC preprotein tran 35.6 1.9E+02 0.0042 22.7 6.8 26 416-441 21-46 (84)
127 PRK00299 sulfur transfer prote 33.6 2.3E+02 0.0049 22.0 8.9 68 130-208 10-77 (81)
128 PRK14018 trifunctional thiored 33.4 68 0.0015 34.7 5.1 50 214-263 205-272 (521)
129 cd04888 ACT_PheB-BS C-terminal 33.4 2E+02 0.0043 21.3 8.3 62 96-161 13-74 (76)
130 PF02680 DUF211: Uncharacteriz 33.0 1.4E+02 0.0031 24.0 5.5 67 46-113 5-76 (95)
131 cd04888 ACT_PheB-BS C-terminal 32.9 2E+02 0.0044 21.2 9.0 58 178-235 13-74 (76)
132 PRK10929 putative mechanosensi 32.8 9E+02 0.02 29.1 14.3 23 336-358 636-658 (1109)
133 COG4956 Integral membrane prot 32.7 5.2E+02 0.011 25.9 12.2 14 512-525 329-342 (356)
134 PRK08433 flagellar motor switc 32.5 1.7E+02 0.0038 24.4 6.3 24 503-526 75-99 (111)
135 TIGR00830 PTBA PTS system, glu 31.6 47 0.001 28.2 2.9 53 462-514 26-100 (121)
136 cd00210 PTS_IIA_glc PTS_IIA, P 31.5 48 0.001 28.3 2.9 29 486-514 72-100 (124)
137 PF02682 AHS1: Allophanate hyd 30.6 1.1E+02 0.0024 28.6 5.4 45 218-264 28-74 (202)
138 PRK06788 flagellar motor switc 30.0 1.3E+02 0.0028 25.4 5.2 67 454-535 42-110 (119)
139 TIGR00914 2A0601 heavy metal e 29.0 1.1E+03 0.023 28.4 23.2 47 145-191 170-222 (1051)
140 COG0272 Lig NAD-dependent DNA 28.7 38 0.00083 37.3 2.3 27 456-482 365-393 (667)
141 KOG3814 Signaling protein van 28.6 6.6E+02 0.014 25.8 11.7 21 426-446 245-265 (531)
142 TIGR00074 hypC_hupF hydrogenas 28.1 1.3E+02 0.0027 23.3 4.4 17 456-472 33-49 (76)
143 PRK14018 trifunctional thiored 27.6 97 0.0021 33.6 5.1 49 140-188 205-271 (521)
144 PF03120 DNA_ligase_OB: NAD-de 26.3 34 0.00074 26.8 1.1 25 456-480 47-73 (82)
145 PF03927 NapD: NapD protein; 25.6 3.2E+02 0.0069 21.1 7.6 41 143-186 17-57 (79)
146 PF12791 RsgI_N: Anti-sigma fa 25.1 1.3E+02 0.0028 21.3 3.8 37 434-475 5-42 (56)
147 COG1862 YajC Preprotein transl 25.0 3.5E+02 0.0075 22.0 6.6 29 413-441 24-52 (97)
148 COG2177 FtsX Cell division pro 24.4 5.6E+02 0.012 25.6 9.4 81 58-161 71-151 (297)
149 PRK09439 PTS system glucose-sp 24.1 74 0.0016 28.8 2.9 53 461-513 47-121 (169)
150 KOG1635 Peptide methionine sul 23.3 1.8E+02 0.004 26.2 5.1 48 140-187 31-97 (191)
151 PF09580 Spore_YhcN_YlaJ: Spor 23.2 2E+02 0.0043 26.0 5.8 46 142-187 76-123 (177)
152 PRK15385 magnesium transport p 23.1 5.1E+02 0.011 24.6 8.4 92 144-238 124-223 (225)
153 PRK04435 hypothetical protein; 22.9 4.6E+02 0.01 23.0 7.7 62 96-161 82-143 (147)
154 PF03453 MoeA_N: MoeA N-termin 22.9 98 0.0021 27.7 3.5 61 455-520 80-145 (162)
155 TIGR03527 selenium_YedF seleni 22.9 4E+02 0.0088 24.6 7.7 66 133-209 2-67 (194)
156 PRK10726 hypothetical protein; 22.8 3.2E+02 0.007 22.3 5.9 49 332-385 54-102 (105)
157 TIGR02876 spore_yqfD sporulati 22.7 3.4E+02 0.0074 28.2 7.9 20 426-446 145-164 (382)
158 PRK15348 type III secretion sy 21.1 7.6E+02 0.017 23.9 10.3 32 218-249 110-154 (249)
159 COG1465 Predicted alternative 20.7 97 0.0021 30.4 3.1 21 452-472 341-361 (376)
160 PF02700 PurS: Phosphoribosylf 20.6 4.1E+02 0.0089 20.6 6.5 26 167-192 4-31 (80)
161 PF00358 PTS_EIIA_1: phosphoen 20.1 97 0.0021 26.8 2.7 53 461-513 29-103 (132)
162 TIGR03527 selenium_YedF seleni 20.1 2.1E+02 0.0046 26.5 5.2 52 52-113 3-54 (194)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-79 Score=645.73 Aligned_cols=491 Identities=46% Similarity=0.721 Sum_probs=447.9
Q ss_pred CCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhhhhccCCCCCCCCCeeEEEe
Q 008590 53 TGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQY 132 (560)
Q Consensus 53 ~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 132 (560)
.||+|.+|...++++++..+|+.+..+++..+++.+.|+ ...+++.+.+.+++.||++...+++... ..+..+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~~------~~~~~l 73 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEIT------ASKCYL 73 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCccc------cceeEE
Confidence 489999999999999999999999999999999999999 7889999999999999999887665422 226789
Q ss_pred ecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCC---ceeEEEEEe
Q 008590 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSG---QDKILLQVT 209 (560)
Q Consensus 133 ~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~~~~---~~~~~~~v~ 209 (560)
++.||+|.+|+.++|+.+++.+|+.++.+.+..+++++.|||..++...+.+.++++||.+...++.+ ...+.|.+.
T Consensus 74 ~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L~v~ 153 (951)
T KOG0207|consen 74 SVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNSNQKIYLDVL 153 (951)
T ss_pred EecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCCCCcEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999998776542 157899999
Q ss_pred cccchhhHHHHHhhhccCCCeeEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcceEEecC---ccccccccchHH
Q 008590 210 GVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMN---PFARMTSRDSEE 286 (560)
Q Consensus 210 g~~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~ydp~~~~~~~l~~~i~~~g~~~~~~~~~~---~~~~~~~~~~~~ 286 (560)
||.|..|...|+..+.+++||.+++++..+.++.|.|||..++++++.+.++..+ +.+.... ...+...+...+
T Consensus 154 g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~---~~~~~~~~~~~~~~~~l~~~~e 230 (951)
T KOG0207|consen 154 GMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETG---FEASVRPYGDTTFKNSLKHKEE 230 (951)
T ss_pred cccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhc---ccceeeeccccchhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999998 4433221 111112234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhccCCCcHHHHHHHHHHHHhhheeCHHHHHHHHHHHHcCCCChh
Q 008590 287 TSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRNGSTNMD 366 (560)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~m~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~g~~~~~~a~~~l~~~~~~md 366 (560)
.++|++.|.+...+++|++++.+++++..++...+....+++++..++.++|+++++|..||+||..||++|+++..|||
T Consensus 231 i~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~vqf~~G~~fy~~A~ksL~~g~~nMd 310 (951)
T KOG0207|consen 231 IRKWKRPFLISLGFSLPVSFAMIICPPLAWILALLVPFLPGLSYGNSLSFVLATPVQFVGGRPFYLAAYKSLKRGSANMD 310 (951)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhhccccccchhhhHHHhhhheeeEEecceeeHHHHHHHHhcCCCCce
Confidence 78999999999999999999888888876644443344677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCC
Q 008590 367 VLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVG 446 (560)
Q Consensus 367 ~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g 446 (560)
+|+.++++++|+||++.++.....+. +..|||++.|+++|+.+|+|+|.+++.|+..++.+|++++|.++.++ .+|
T Consensus 311 vLv~L~t~aay~~S~~~~~~~~~~~~-~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii---~~g 386 (951)
T KOG0207|consen 311 VLVVLGTTAAYFYSIFSLLAAVVFDS-PPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATII---EDG 386 (951)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHccC-cchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEe---ecC
Confidence 99999999999999999988777644 78899999999999999999999999999999999999999999999 555
Q ss_pred cceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEeccceeecccccCCCcccccCCCCcEEEeeeeecceEEEEEEEecc
Q 008590 447 KCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGS 526 (560)
Q Consensus 447 ~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~ 526 (560)
+ .+++||++.+++||+|.|+||++||+||+|++|++.||||+||||++||.|++|+.|.|||+|.+|.+.+++++.|.
T Consensus 387 ~--~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~ViaGsiN~nG~l~VkaT~~g~ 464 (951)
T KOG0207|consen 387 S--EEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVIAGSINLNGTLLVKATKVGG 464 (951)
T ss_pred C--cceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeeeeeeecCCceEEEEEEeccc
Confidence 2 27999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhccCChhHHHHhHhhhccc
Q 008590 527 DAVLSQIISLVETAQMSKAPIQKFADFVSFFML 559 (560)
Q Consensus 527 ~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~~ 559 (560)
||.++||++++++||.+|+|+||++||+|+|||
T Consensus 465 dttla~IvkLVEEAQ~sKapiQq~aDkia~yFv 497 (951)
T KOG0207|consen 465 DTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFV 497 (951)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHHHhhhcCC
Confidence 999999999999999999999999999999997
No 2
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=2.2e-56 Score=503.63 Aligned_cols=406 Identities=29% Similarity=0.430 Sum_probs=323.3
Q ss_pred eEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccC--------
Q 008590 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSS-------- 199 (560)
Q Consensus 128 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~~~-------- 199 (560)
++.++.|+||+|++|+.+|++++.+++||..+.+++. +.++..+ .+.+.+.+.++++||++....+.
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCcccccccccccccccc
Confidence 4688999999999999999999999999999999984 4555532 47889999999999998763210
Q ss_pred -------------------CceeEEEEEecccchhhHHHHHhhhccCCCeeEEEeecCCCeEEEEeCCCCCChhHHHHHH
Q 008590 200 -------------------GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGI 260 (560)
Q Consensus 200 -------------------~~~~~~~~v~g~~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~ydp~~~~~~~l~~~i 260 (560)
...+.++.+.||+|..|+..+++.+...+||.++.++..+++..+.+ ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 01246788999999999999999999999999999999999888764 24567777888
Q ss_pred HhcCCCcceEEecCccccccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhccCCCcHHHHH-H
Q 008590 261 AGRSNGKFQIRVMNPFARMTSRD----SEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWL-N 335 (560)
Q Consensus 261 ~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~m~l~~~~~~~~~~~~~~~~~~~~~~~-~ 335 (560)
+..+ |...+..+........ ++..+.+.+++..+++++++++.+.+...+ + ...+.....|+ .
T Consensus 155 ~~~G---y~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~ 222 (834)
T PRK10671 155 EKAG---YGAEAIEDDAKRRERQQETAQATMKRFRWQAIVALAVGIPVMVWGMIGDN-------M--MVTADNRSLWLVI 222 (834)
T ss_pred HhcC---CCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------c--ccCccchhHHHHH
Confidence 8877 4433221111000000 111122223333333333333322211000 0 00000111244 3
Q ss_pred HHHHHHhhheeCHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCchhhhHHHHHHHHHHHHHH
Q 008590 336 WALVSVVQFVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVT-GFWSPTYFETSAMLITFVLFGKYL 414 (560)
Q Consensus 336 ~~la~~v~~~~g~~~~~~a~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~~~ 414 (560)
+++++++++|.||||++.||++|+++.+|||+|++++++++|+||++.++..... ......||++++++++|+++|+|+
T Consensus 223 ~~~~~~~~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~l 302 (834)
T PRK10671 223 GLITLAVMVFAGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHML 302 (834)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999876542111 111245999999999999999999
Q ss_pred HHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEeccceeecccccCC
Q 008590 415 EILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGE 494 (560)
Q Consensus 415 ~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~vdes~lTGE 494 (560)
|.+++.|+.+.+++|+++.|.+++++ ++| .+.+|++++|++||+|+|+|||+||+||+|++|++.||||+||||
T Consensus 303 e~~~~~~~~~~~~~L~~l~p~~a~~~---~~~---~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGE 376 (834)
T PRK10671 303 EARARQRSSKALEKLLDLTPPTARVV---TDE---GEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGE 376 (834)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEE---eCC---cEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCC
Confidence 99999999999999999999999998 777 678999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhhccc
Q 008590 495 AVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSFFML 559 (560)
Q Consensus 495 s~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~~ 559 (560)
|.|+.|++||.||+||+|.+|.+.++|+++|.+|+++||.+++++++.+|+|+|+++|++++||+
T Consensus 377 s~pv~k~~gd~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v 441 (834)
T PRK10671 377 PIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFV 441 (834)
T ss_pred CCCEecCCCCEEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 3
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-57 Score=484.28 Aligned_cols=326 Identities=39% Similarity=0.612 Sum_probs=277.9
Q ss_pred eEEEEEecccchhhHHHHHhhhccCCCeeEEEeecCCCeEEEEeCCCCCC-hhHHHHHHHhcCCCcceEEecC-cccccc
Q 008590 203 KILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALS-SRSLVDGIAGRSNGKFQIRVMN-PFARMT 280 (560)
Q Consensus 203 ~~~~~v~g~~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~ydp~~~~-~~~l~~~i~~~g~~~~~~~~~~-~~~~~~ 280 (560)
+..+.+.||+|.+|+..+| .+++.+||.++.+|+.++.+.+.|++...+ .+++...++..| |.+.... ......
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~g---y~~~~~~~~~~~~~ 78 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAG---YSARLTAALADPAE 78 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcC---ccccccccccchhh
Confidence 5689999999999999999 999999999999999999999999998777 789999999999 6543200 000000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhccCCCcHHHHHHHHHHHHhhheeCHHHHHHHHHHHHc
Q 008590 281 SRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRN 360 (560)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~g~~~~~~a~~~l~~ 360 (560)
...... ....+.++...++.+++++..+.... + .....|+.++++++++++.|||||+.+|+.+++
T Consensus 79 ~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~ 144 (713)
T COG2217 79 AEARLL-RELLRRLIIAGLLTLPLLLLSLGLLL------------G-AFLLPWVSFLLATPVLFYGGWPFYRGAWRALRR 144 (713)
T ss_pred hhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhc------------c-hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 000000 12233334444444443332211111 0 134468889999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEE
Q 008590 361 GSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLV 440 (560)
Q Consensus 361 ~~~~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~ 440 (560)
+.+|||+|++++++.+|+||.+.++.. .||++++++++|+++|+++|.+++.|+++++++|+++.|++++++
T Consensus 145 ~~~~md~Lv~la~~~A~~~s~~~~~~~--------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~ 216 (713)
T COG2217 145 GRLNMDTLVALATIGAYAYSLYATLFP--------VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVV 216 (713)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999999999999999999999988763 799999999999999999999999999999999999999999887
Q ss_pred EecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEeccceeecccccCCCcccccCCCCcEEEeeeeecceEEEE
Q 008590 441 VKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQ 520 (560)
Q Consensus 441 ~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~ 520 (560)
. +|| ++++||+++|++||+|+|+|||+||+||+|++|++.||||+|||||+|+.|++||.||+||+|.+|.++++
T Consensus 217 ~--~~~---~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l~i~ 291 (713)
T COG2217 217 R--GDG---EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSLTIR 291 (713)
T ss_pred e--cCC---cEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccEEEE
Confidence 4 355 37999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhhccc
Q 008590 521 ATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSFFML 559 (560)
Q Consensus 521 v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~~ 559 (560)
|+++|.+|+++||+++|+++|.+|+|+|+++||++.||+
T Consensus 292 vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fv 330 (713)
T COG2217 292 VTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFV 330 (713)
T ss_pred EEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccH
Confidence 999999999999999999999999999999999999996
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=2e-44 Score=398.85 Aligned_cols=309 Identities=22% Similarity=0.301 Sum_probs=249.0
Q ss_pred ceeEEEEEecccchhhHHHHHhhhccCCCeeEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcceEEecCcccccc
Q 008590 201 QDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFARMT 280 (560)
Q Consensus 201 ~~~~~~~v~g~~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~ydp~~~~~~~l~~~i~~~g~~~~~~~~~~~~~~~~ 280 (560)
..+.++.+.||+|..|+..+++.+...+||.+++++..+.+..+.|++.. . +++.+.++..| |.+......
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~G---y~a~~~~~~---- 122 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAG---FSLRDEQAA---- 122 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcc---cccccccch----
Confidence 45678899999999999999999999999999999999999999998863 2 66777777777 543322110
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhccCCCcHHHHHHHHHHHHhhheeCHHHHHHHHHHHHc
Q 008590 281 SRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRN 360 (560)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~g~~~~~~a~~~l~~ 360 (560)
..+.+...++ ..+. ++....++++++.+.. .. ....|+.++++ .++.||||+++||+.+++
T Consensus 123 -~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~---~~~~~~~~~~~a~~~l~~ 183 (741)
T PRK11033 123 -AAAPESRLKS-ENLP-LITLAVMMAISWGLEQ-----------FN--HPFGQLAFIAT---TLVGLYPIARKALRLIRS 183 (741)
T ss_pred -hhhHHHHHHH-HHHH-HHHHHHHHHHHHHHhh-----------hh--hHHHHHHHHHH---HHHHHHHHHHHHHHHHHc
Confidence 0011111121 1111 1111111111111000 00 00123334333 367889999999999999
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEE
Q 008590 361 GST-NMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALL 439 (560)
Q Consensus 361 ~~~-~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v 439 (560)
+.+ +||+|++++++++|+++ .|+.++++++++++|+++|.++++|+.+.+++|+.+.|.++++
T Consensus 184 ~~~~~~~~L~~~a~~~a~~~~----------------~~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~v 247 (741)
T PRK11033 184 GSPFAIETLMSVAAIGALFIG----------------ATAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATR 247 (741)
T ss_pred CCCCCccHHHHHHHHHHHHHc----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 885 99999999999987663 2456889999999999999999999999999999999999999
Q ss_pred EEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEeccceeecccccCCCcccccCCCCcEEEeeeeecceEEE
Q 008590 440 VVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHI 519 (560)
Q Consensus 440 ~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~ 519 (560)
+ +|| ++++|++++|+|||+|.|+|||+||+||+|++|++.||||+|||||.|+.|++||.||+||.+++|.+++
T Consensus 248 i---r~g---~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G~~~i 321 (741)
T PRK11033 248 L---RDG---EREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDRLVTL 321 (741)
T ss_pred E---ECC---EEEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCceEEE
Confidence 8 788 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhhccc
Q 008590 520 QATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSFFML 559 (560)
Q Consensus 520 ~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~~ 559 (560)
+|+++|++|+++||.+++++++.+|+|+|+++|++++||+
T Consensus 322 ~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~ 361 (741)
T PRK11033 322 EVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYT 361 (741)
T ss_pred EEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999985
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=2.9e-40 Score=356.26 Aligned_cols=209 Identities=52% Similarity=0.800 Sum_probs=194.2
Q ss_pred eCHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCchhhhHHHHHHHHHHHHHHHHHHhccHHH
Q 008590 346 IGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVT-GFWSPTYFETSAMLITFVLFGKYLEILAKGKTSD 424 (560)
Q Consensus 346 ~g~~~~~~a~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 424 (560)
+||||+++||++|+++++|||+|++++++++|+||++.++.+... +.....||++++++++++++|+++|.++++|+.+
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999988764321 1122469999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEeccceeecccccCCCcccccCCCC
Q 008590 425 AIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINS 504 (560)
Q Consensus 425 ~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g~ 504 (560)
.+++|+++.|.+++++. ++| .+++|++++|++||+|.|++||+||+||+|++|++.||||+|||||.|+.|++||
T Consensus 81 ~~~~L~~~~p~~a~~~~--~~~---~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd 155 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLT--KDG---SIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGD 155 (562)
T ss_pred HHHHHHhcCCCEEEEEE--CCC---eEEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCC
Confidence 99999999999999883 235 5689999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhhccc
Q 008590 505 PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSFFML 559 (560)
Q Consensus 505 ~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~~ 559 (560)
.|||||.|.+|.++++|+++|.+|+++||.+++++++.+|+|+|+++|++++||+
T Consensus 156 ~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~ 210 (562)
T TIGR01511 156 PVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFV 210 (562)
T ss_pred EEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999985
No 6
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.97 E-value=1.6e-31 Score=287.55 Aligned_cols=173 Identities=40% Similarity=0.608 Sum_probs=163.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecC
Q 008590 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (560)
Q Consensus 365 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 444 (560)
||+|++++++++|+++ .|++ +++++++++++++++.++++|+.+.+++|.++.|.+++++ |
T Consensus 1 ~~~l~~~a~~~~~~~~---------------~~~~-~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~---r 61 (536)
T TIGR01512 1 VDLLMALAALGAVAIG---------------EYLE-GALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVL---R 61 (536)
T ss_pred CcHHHHHHHHHHHHHh---------------hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 7899999999988764 2555 5788899999999999999999999999999999999999 7
Q ss_pred CCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEeccceeecccccCCCcccccCCCCcEEEeeeeecceEEEEEEEe
Q 008590 445 VGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKV 524 (560)
Q Consensus 445 ~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~ 524 (560)
|| ++++++.++|+|||+|.+++||+|||||+|++|++.||||+|||||.|+.|++||.||+||.+.+|.++++|+++
T Consensus 62 ~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~~ 138 (536)
T TIGR01512 62 GG---SLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTKL 138 (536)
T ss_pred CC---EEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEEe
Confidence 88 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhccCChhHHHHhHhhhccc
Q 008590 525 GSDAVLSQIISLVETAQMSKAPIQKFADFVSFFML 559 (560)
Q Consensus 525 g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~~ 559 (560)
|.+|++|||.+++++++.+++|+|+.+|+++++|+
T Consensus 139 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (536)
T TIGR01512 139 PADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYT 173 (536)
T ss_pred ccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 7
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.97 E-value=2.9e-31 Score=287.21 Aligned_cols=173 Identities=46% Similarity=0.670 Sum_probs=164.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecC
Q 008590 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (560)
Q Consensus 365 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 444 (560)
||+|++++++.+|++|.| ..+.+++++++++++++.++++|+.+.+++|..+.|.+++++ |
T Consensus 1 ~d~l~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~---r 61 (556)
T TIGR01525 1 MDLLMALATIAAYAMGLV----------------LEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVL---Q 61 (556)
T ss_pred CcHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 799999999999988632 358899999999999999999999999999999999999998 6
Q ss_pred C-CcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEeccceeecccccCCCcccccCCCCcEEEeeeeecceEEEEEEE
Q 008590 445 V-GKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATK 523 (560)
Q Consensus 445 ~-g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~ 523 (560)
+ | ++.+++.++|+|||+|.+++||+||+||+|++|.+.||||+|||||.|+.|++||.||+||.+.+|.++++|++
T Consensus 62 ~~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~~ 138 (556)
T TIGR01525 62 GDG---SEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVTK 138 (556)
T ss_pred CCC---eEEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEEE
Confidence 6 5 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHHhhccCChhHHHHhHhhhccc
Q 008590 524 VGSDAVLSQIISLVETAQMSKAPIQKFADFVSFFML 559 (560)
Q Consensus 524 ~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~~ 559 (560)
+|.+|+++||.+++++++.+|+|+|+.+|+++++|+
T Consensus 139 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~ 174 (556)
T TIGR01525 139 LGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYV 174 (556)
T ss_pred ecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.96 E-value=7.7e-29 Score=275.73 Aligned_cols=154 Identities=21% Similarity=0.371 Sum_probs=145.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEE
Q 008590 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 479 (560)
Q Consensus 400 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v 479 (560)
.+.+++++++++..++.+.++++.+++++|.++.|.+++|+ ||| ++++|+.++|+|||+|.+++||+|||||+|
T Consensus 57 ~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~---Rdg---~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~v 130 (755)
T TIGR01647 57 DFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVL---RDG---KWQEIPASELVPGDVVRLKIGDIVPADCRL 130 (755)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECC---EEEEEEhhhCcCCCEEEECCCCEEeceEEE
Confidence 46677778888889999999999999999999999999999 888 789999999999999999999999999999
Q ss_pred Eecc-ceeecccccCCCcccccCCCCcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhhcc
Q 008590 480 VWGT-SYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSFFM 558 (560)
Q Consensus 480 ~~g~-~~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~ 558 (560)
++|. ..||||+|||||.|+.|++||.+|+||.+.+|.++++|+++|.+|++|||.+++++++.+++|+|+.+|+++.+|
T Consensus 131 i~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~~~~ 210 (755)
T TIGR01647 131 FEGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIGLFL 210 (755)
T ss_pred EecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHHHHH
Confidence 9998 779999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 008590 559 L 559 (560)
Q Consensus 559 ~ 559 (560)
+
T Consensus 211 ~ 211 (755)
T TIGR01647 211 I 211 (755)
T ss_pred H
Confidence 4
No 9
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.96 E-value=3.2e-28 Score=262.12 Aligned_cols=158 Identities=31% Similarity=0.440 Sum_probs=141.0
Q ss_pred chhhhH--HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCce-EEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCc
Q 008590 396 TYFETS--AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 472 (560)
Q Consensus 396 ~~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~ 472 (560)
.||+.+ .++++.++++.++|.++++|+.+++++|.++.|+. ++++. +|| ++++|+.++|++||+|.|++||+
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr--~dg---~~~~V~~~~L~~GDiV~V~~Gd~ 137 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLR--DDG---AIDKVPADQLKKGDIVLVEAGDV 137 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe--eCC---EEEEEEHHHCCCCCEEEECCCCE
Confidence 356544 33444468999999999999999999999998874 76662 367 78999999999999999999999
Q ss_pred cCcceEEEeccceeecccccCCCcccccCCCCc---EEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHH
Q 008590 473 LPADGIVVWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQK 549 (560)
Q Consensus 473 iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~ 549 (560)
||+||+|++|.+.||||+|||||.||.|++|+. ||+||.+.+|.++++|+++|++|+++||.+++++++.+|+|+|.
T Consensus 138 IPaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~ 217 (675)
T TIGR01497 138 IPCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEI 217 (675)
T ss_pred EeeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHH
Confidence 999999999999999999999999999999985 99999999999999999999999999999999999999999998
Q ss_pred HHhHhhhcc
Q 008590 550 FADFVSFFM 558 (560)
Q Consensus 550 ~~d~~~~~~ 558 (560)
..+.++.++
T Consensus 218 ~l~~l~~~l 226 (675)
T TIGR01497 218 ALTILLIAL 226 (675)
T ss_pred HHHHHHHHH
Confidence 888776553
No 10
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.96 E-value=3.8e-28 Score=262.14 Aligned_cols=154 Identities=30% Similarity=0.388 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCc-eEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceE
Q 008590 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGI 478 (560)
Q Consensus 400 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~ 478 (560)
.+.++++.++++.++|.++++|+.+.+++|.++.|. +++++ ++|+ .+++||.++|++||+|.|++||+||+||+
T Consensus 68 i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vi---r~g~--~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~ 142 (679)
T PRK01122 68 ITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKL---REPG--AAEEVPATELRKGDIVLVEAGEIIPADGE 142 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE---ECCC--EEEEEEHHHcCCCCEEEEcCCCEEEEEEE
Confidence 455666667899999999999999999999999886 68888 6662 37899999999999999999999999999
Q ss_pred EEeccceeecccccCCCcccccCCCCc---EEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhh
Q 008590 479 VVWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVS 555 (560)
Q Consensus 479 v~~g~~~vdes~lTGEs~pv~k~~g~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~ 555 (560)
|++|.+.||||+|||||.|+.|++|+. ||+||.+++|.++++|+++|++|.++||.+++++++.+|+|+|...+.+.
T Consensus 143 vieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~ 222 (679)
T PRK01122 143 VIEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILL 222 (679)
T ss_pred EEEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999998887766
Q ss_pred hcc
Q 008590 556 FFM 558 (560)
Q Consensus 556 ~~~ 558 (560)
.++
T Consensus 223 ~~l 225 (679)
T PRK01122 223 AGL 225 (679)
T ss_pred Hhh
Confidence 554
No 11
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.96 E-value=3.8e-28 Score=261.92 Aligned_cols=148 Identities=30% Similarity=0.430 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCCc-eEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEec
Q 008590 404 LITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (560)
Q Consensus 404 i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g 482 (560)
+++.+++|.++|.+++.|+.++++.|.++.|. +++++. ||| ++++|+.++|++||+|.+++||+||+||+|++|
T Consensus 72 l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~--rdg---~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG 146 (673)
T PRK14010 72 LLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIK--QDG---SYEMIDASDLKKGHIVRVATGEQIPNDGKVIKG 146 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEE--eCC---EEEEEEHHHcCCCCEEEECCCCcccCCeEEEEc
Confidence 34444689999999999999999999999986 776432 677 789999999999999999999999999999999
Q ss_pred cceeecccccCCCcccccCCC---CcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhh
Q 008590 483 TSYVNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSF 556 (560)
Q Consensus 483 ~~~vdes~lTGEs~pv~k~~g---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~ 556 (560)
.+.||||+|||||.|+.|++| |.||+||.+.+|.++++|+++|.+|+++||++++++++.+|+|+|.....+..
T Consensus 147 ~~~VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~ 223 (673)
T PRK14010 147 LATVDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLM 223 (673)
T ss_pred ceEEecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHH
Confidence 999999999999999999999 88999999999999999999999999999999999999999999977766544
No 12
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.95 E-value=1.1e-27 Score=269.69 Aligned_cols=156 Identities=21% Similarity=0.289 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcc---eeeEEeeCCCcCcCCEEEEcCCCccCcc
Q 008590 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC---IEEREIDALLIQSGDTLKVLPGTKLPAD 476 (560)
Q Consensus 400 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~---~~~~~v~~~~l~~GDii~v~~g~~iP~D 476 (560)
.+.+++++++++.+++.++++|+.+++++|.++.+.+++|+ |||+. .++.+|+.++|+|||+|.+++||+||||
T Consensus 124 ~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi---R~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaD 200 (902)
T PRK10517 124 AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL---RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPAD 200 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeee
Confidence 57778888899999999999999999999999999999998 66210 0678999999999999999999999999
Q ss_pred eEEEeccc-eeecccccCCCcccccCCCC-------------cEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhc
Q 008590 477 GIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM 542 (560)
Q Consensus 477 g~v~~g~~-~vdes~lTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 542 (560)
|+|++|.+ .||||+|||||.|+.|.+|+ .||+||.+.+|.++++|+++|.+|.+|||.+++++++.
T Consensus 201 g~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~~~~~ 280 (902)
T PRK10517 201 LRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSEQDS 280 (902)
T ss_pred EEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhhccCC
Confidence 99999987 69999999999999999885 69999999999999999999999999999999999999
Q ss_pred cCChhHHHHhHhhhcc
Q 008590 543 SKAPIQKFADFVSFFM 558 (560)
Q Consensus 543 ~k~~~q~~~d~~~~~~ 558 (560)
+++|+|+.+|+++++|
T Consensus 281 ~~t~lq~~~~~i~~~l 296 (902)
T PRK10517 281 EPNAFQQGISRVSWLL 296 (902)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 9999999999998875
No 13
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.95 E-value=6.7e-27 Score=263.57 Aligned_cols=155 Identities=22% Similarity=0.331 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecC------CCcceeeEEeeCCCcCcCCEEEEcCCC
Q 008590 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK------VGKCIEEREIDALLIQSGDTLKVLPGT 471 (560)
Q Consensus 398 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~------~g~~~~~~~v~~~~l~~GDii~v~~g~ 471 (560)
+..+++++++++++..++.+.++|+.+++++|.++.+..++|+ | || ++++|+.++|+|||+|.+++||
T Consensus 88 ~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~---R~~~~~~dg---~~~~I~~~eLv~GDiV~l~~Gd 161 (867)
T TIGR01524 88 LEATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVL---RVINENGNG---SMDEVPIDALVPGDLIELAAGD 161 (867)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEE---EecccCCCC---eEEEEEhhcCCCCCEEEECCCC
Confidence 3357777788888889999999999999999999999999988 6 77 7899999999999999999999
Q ss_pred ccCcceEEEeccc-eeecccccCCCcccccCCCC-------------cEEEeeeeecceEEEEEEEecchhHHHHHHHHH
Q 008590 472 KLPADGIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLV 537 (560)
Q Consensus 472 ~iP~Dg~v~~g~~-~vdes~lTGEs~pv~k~~g~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~ 537 (560)
+|||||+|++|.+ .||||+|||||.|+.|.+|+ .||+||.+.+|.++++|+++|.+|.+|||.+++
T Consensus 162 ~VPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v 241 (867)
T TIGR01524 162 IIPADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAA 241 (867)
T ss_pred EEcccEEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHh
Confidence 9999999999987 69999999999999999886 599999999999999999999999999999999
Q ss_pred HHhhccCChhHHHHhHhhhccc
Q 008590 538 ETAQMSKAPIQKFADFVSFFML 559 (560)
Q Consensus 538 ~~~~~~k~~~q~~~d~~~~~~~ 559 (560)
++ ...++|+|+.+|+++++|+
T Consensus 242 ~~-~~~~t~lq~~~~~i~~~~~ 262 (867)
T TIGR01524 242 TE-RRGQTAFDKGVKSVSKLLI 262 (867)
T ss_pred hC-CCCCCcHHHHHHHHHHHHH
Confidence 99 7779999999999998763
No 14
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.94 E-value=1e-26 Score=263.51 Aligned_cols=153 Identities=21% Similarity=0.291 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEE
Q 008590 401 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVV 480 (560)
Q Consensus 401 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~ 480 (560)
+..+++++++...++.+.++++.+++++|.++.|.+++|+ ||| ++++|+.++|+|||+|.+++||+|||||+|+
T Consensus 83 ~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~Vi---Rdg---~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii 156 (884)
T TIGR01522 83 AVSITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLI---REG---KLEHVLASTLVPGDLVCLSVGDRVPADLRIV 156 (884)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEEEHHHCccCCEEEecCCCEEeeeEEEE
Confidence 4444444455556666677788899999999999999999 888 7899999999999999999999999999999
Q ss_pred ecc-ceeecccccCCCcccccCCCC--------------cEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCC
Q 008590 481 WGT-SYVNESMVTGEAVPVLKEINS--------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKA 545 (560)
Q Consensus 481 ~g~-~~vdes~lTGEs~pv~k~~g~--------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~ 545 (560)
+|. ..||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|+++|.+|.+|+|.+++++++..|+
T Consensus 157 ~g~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt 236 (884)
T TIGR01522 157 EAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKT 236 (884)
T ss_pred EcCceEEEcccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCC
Confidence 996 579999999999999999874 79999999999999999999999999999999999999999
Q ss_pred hhHHHHhHhhhccc
Q 008590 546 PIQKFADFVSFFML 559 (560)
Q Consensus 546 ~~q~~~d~~~~~~~ 559 (560)
|+|+.+|+++++|+
T Consensus 237 ~lq~~l~~l~~~~~ 250 (884)
T TIGR01522 237 PLQKSMDLLGKQLS 250 (884)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999998763
No 15
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.94 E-value=2.4e-26 Score=222.03 Aligned_cols=151 Identities=27% Similarity=0.476 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCce-EEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEe
Q 008590 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVW 481 (560)
Q Consensus 403 ~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~ 481 (560)
+++++++++.+++.+.++|+.+.++++....+++ +.++ ||| ++++++.++|+|||+|.+++||++||||+|++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~---r~~---~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVI---RDG---RWQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEE---ETT---EEEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEE---ecc---ccccchHhhccceeeeecccccccccCcccee
Confidence 4677888999999999999999999998888887 7777 788 88999999999999999999999999999999
Q ss_pred -ccceeecccccCCCcccccC-----CCCcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhh
Q 008590 482 -GTSYVNESMVTGEAVPVLKE-----INSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVS 555 (560)
Q Consensus 482 -g~~~vdes~lTGEs~pv~k~-----~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~ 555 (560)
|.+.||||.+|||+.|+.|. +|+.+|+||.+.+|.+.++|+++|.+|.++++.+.+...+.+++++++.+++++
T Consensus 75 ~g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00122_consen 75 SGSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIA 154 (230)
T ss_dssp SSEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999999888899999999999
Q ss_pred hccc
Q 008590 556 FFML 559 (560)
Q Consensus 556 ~~~~ 559 (560)
.+++
T Consensus 155 ~~~~ 158 (230)
T PF00122_consen 155 KILI 158 (230)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 16
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.93 E-value=1.5e-25 Score=252.92 Aligned_cols=157 Identities=20% Similarity=0.311 Sum_probs=140.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCc---ceeeEEeeCCCcCcCCEEEEcCCCccC
Q 008590 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGK---CIEEREIDALLIQSGDTLKVLPGTKLP 474 (560)
Q Consensus 398 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~---~~~~~~v~~~~l~~GDii~v~~g~~iP 474 (560)
|..+.+++++++++.+++.+.++++.+++++|.++.+.+++|+ |||+ ..++++|+.++|+|||+|.+++||+||
T Consensus 111 ~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~---Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IP 187 (903)
T PRK15122 111 LTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL---RRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIP 187 (903)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE---ECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEe
Confidence 4457778888889999999999999999999999999999998 5531 016789999999999999999999999
Q ss_pred cceEEEeccc-eeecccccCCCcccccCC-----------------------CCcEEEeeeeecceEEEEEEEecchhHH
Q 008590 475 ADGIVVWGTS-YVNESMVTGEAVPVLKEI-----------------------NSPVIGGTINLHGVLHIQATKVGSDAVL 530 (560)
Q Consensus 475 ~Dg~v~~g~~-~vdes~lTGEs~pv~k~~-----------------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~ 530 (560)
|||+|++|.+ .||||+|||||.|+.|.+ ++.||+||.+.+|.++++|+++|.+|++
T Consensus 188 aDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~ 267 (903)
T PRK15122 188 ADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYF 267 (903)
T ss_pred eeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHh
Confidence 9999999987 599999999999999985 2679999999999999999999999999
Q ss_pred HHHHHHHHHhhccCChhHHHHhHhhhcc
Q 008590 531 SQIISLVETAQMSKAPIQKFADFVSFFM 558 (560)
Q Consensus 531 ~~i~~~~~~~~~~k~~~q~~~d~~~~~~ 558 (560)
|||.+++++ ...++|+|+.++++++++
T Consensus 268 gkI~~~v~~-~~~~t~l~~~l~~i~~~l 294 (903)
T PRK15122 268 GSLAKSIVG-TRAQTAFDRGVNSVSWLL 294 (903)
T ss_pred hHHHHHhcC-CCCCCcHHHHHHHHHHHH
Confidence 999999988 567899999888887643
No 17
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.92 E-value=1e-24 Score=249.50 Aligned_cols=157 Identities=22% Similarity=0.307 Sum_probs=145.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcc
Q 008590 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 476 (560)
Q Consensus 397 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~D 476 (560)
+|..+++++++++++..++.+.+.|+.+.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.+++|++||||
T Consensus 103 ~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~Vi---Rdg---~~~~I~~~~lv~GDiv~l~~Gd~IPaD 176 (997)
T TIGR01106 103 NLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVI---RDG---EKMSINAEQVVVGDLVEVKGGDRIPAD 176 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEeeHHHCCCCCEEEECCCCEEeee
Confidence 44456677777788889999999999999999999999999999 888 789999999999999999999999999
Q ss_pred eEEEeccc-eeecccccCCCcccccCCCC----------cEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCC
Q 008590 477 GIVVWGTS-YVNESMVTGEAVPVLKEINS----------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKA 545 (560)
Q Consensus 477 g~v~~g~~-~vdes~lTGEs~pv~k~~g~----------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~ 545 (560)
|++++|.. .||||.|||||.|+.|.+|+ .+|+||.+++|.+.++|+++|.+|.+|||.+++++++.+++
T Consensus 177 ~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 256 (997)
T TIGR01106 177 LRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKT 256 (997)
T ss_pred EEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCC
Confidence 99999985 69999999999999999875 59999999999999999999999999999999999999999
Q ss_pred hhHHHHhHhhhccc
Q 008590 546 PIQKFADFVSFFML 559 (560)
Q Consensus 546 ~~q~~~d~~~~~~~ 559 (560)
|+|+.+++++++++
T Consensus 257 pl~~~~~~~~~~~~ 270 (997)
T TIGR01106 257 PIAIEIEHFIHIIT 270 (997)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999998753
No 18
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.92 E-value=6.8e-25 Score=249.34 Aligned_cols=155 Identities=23% Similarity=0.303 Sum_probs=143.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcce
Q 008590 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADG 477 (560)
Q Consensus 398 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg 477 (560)
|..+.++++++++...+..+.++++.+.+++|.++.+.+++|+ ||| ++.+++.++|+|||+|.+++||+|||||
T Consensus 36 ~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~Vi---Rdg---~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~ 109 (917)
T TIGR01116 36 FVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVL---RDG---RWSVIKAKDLVPGDIVELAVGDKVPADI 109 (917)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEEHHHCCCCCEEEECCCCEeeccE
Confidence 4457777777788888999999999999999999999999999 888 7899999999999999999999999999
Q ss_pred EEEecc-ceeecccccCCCcccccCCC-------------CcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhcc
Q 008590 478 IVVWGT-SYVNESMVTGEAVPVLKEIN-------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMS 543 (560)
Q Consensus 478 ~v~~g~-~~vdes~lTGEs~pv~k~~g-------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~ 543 (560)
++++|. ..||||+|||||.|+.|.++ +.||+||.+.+|.+.++|+++|.+|.+|||.++++.++.+
T Consensus 110 ~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~~~ 189 (917)
T TIGR01116 110 RVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAEQE 189 (917)
T ss_pred EEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccCCC
Confidence 999997 56999999999999999886 6799999999999999999999999999999999999999
Q ss_pred CChhHHHHhHhhhcc
Q 008590 544 KAPIQKFADFVSFFM 558 (560)
Q Consensus 544 k~~~q~~~d~~~~~~ 558 (560)
++|+|+.+++++.++
T Consensus 190 ~t~lq~~l~~~~~~l 204 (917)
T TIGR01116 190 DTPLQKKLDEFGELL 204 (917)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 19
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.92 E-value=6.2e-25 Score=250.80 Aligned_cols=155 Identities=15% Similarity=0.288 Sum_probs=139.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcce
Q 008590 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADG 477 (560)
Q Consensus 398 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg 477 (560)
|..+.+++++++++..+..++++++.+++.+|.++.+.+++|+ ||| ++.+|+.++|+|||+|.+++|++|||||
T Consensus 81 ~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~Vi---Rdg---~~~~I~a~eLVpGDIv~L~~Gd~VPAD~ 154 (1053)
T TIGR01523 81 WIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVI---RNG---KSDAIDSHDLVPGDICLLKTGDTIPADL 154 (1053)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---eCC---eeeecCHhhCCCCCEEEECCCCEeeccE
Confidence 3357778888888999999999999999999999999999999 899 7899999999999999999999999999
Q ss_pred EEEeccce-eecccccCCCcccccCCC---------------CcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhh
Q 008590 478 IVVWGTSY-VNESMVTGEAVPVLKEIN---------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ 541 (560)
Q Consensus 478 ~v~~g~~~-vdes~lTGEs~pv~k~~g---------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~ 541 (560)
+++++... ||||+|||||.||.|.+. +.+|+||.+.+|.+++.|+++|.+|.+|||.+++.+..
T Consensus 155 rLi~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~ 234 (1053)
T TIGR01523 155 RLIETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDG 234 (1053)
T ss_pred EEEEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhh
Confidence 99999765 999999999999999642 34899999999999999999999999999999997643
Q ss_pred c-----------------------------------cCChhHHHHhHhhhcc
Q 008590 542 M-----------------------------------SKAPIQKFADFVSFFM 558 (560)
Q Consensus 542 ~-----------------------------------~k~~~q~~~d~~~~~~ 558 (560)
. .+||+|+.+++++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l 286 (1053)
T TIGR01523 235 GLFQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVIL 286 (1053)
T ss_pred hccccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHH
Confidence 2 2599999999999764
No 20
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.92 E-value=1.9e-24 Score=246.70 Aligned_cols=153 Identities=20% Similarity=0.309 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc-CCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceE
Q 008590 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVEL-APATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGI 478 (560)
Q Consensus 400 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~ 478 (560)
.+.++++.+++.-.+..+.+.++.+.+++|.+. .+.+++|+ ||| ++++|+.++|+|||+|.+++||+|||||+
T Consensus 130 ~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~Vi---RdG---~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ 203 (941)
T TIGR01517 130 EGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVI---RGG---QEQQISIHDIVVGDIVSLSTGDVVPADGV 203 (941)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEeHHHCCCCCEEEECCCCEecccEE
Confidence 344444445555566666666777777777653 46688888 888 78999999999999999999999999999
Q ss_pred EEec-cceeecccccCCCcccccCCCCc--EEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhh
Q 008590 479 VVWG-TSYVNESMVTGEAVPVLKEINSP--VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVS 555 (560)
Q Consensus 479 v~~g-~~~vdes~lTGEs~pv~k~~g~~--v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~ 555 (560)
|++| ...||||+|||||.|+.|++|+. ||+||.+.+|.++++|+++|.+|.+|||.+++++++ +++|+|+.+++++
T Consensus 204 li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~~~~~ 282 (941)
T TIGR01517 204 FISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKLSELA 282 (941)
T ss_pred EEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHHHHHH
Confidence 9999 67799999999999999999987 999999999999999999999999999999999875 6789999999999
Q ss_pred hccc
Q 008590 556 FFML 559 (560)
Q Consensus 556 ~~~~ 559 (560)
++|+
T Consensus 283 ~~~~ 286 (941)
T TIGR01517 283 GLIG 286 (941)
T ss_pred HHHH
Confidence 8763
No 21
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.91 E-value=1.2e-24 Score=233.56 Aligned_cols=148 Identities=33% Similarity=0.514 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHh--cCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEec
Q 008590 405 ITFVLFGKYLEILAKGKTSDAIKKLVE--LAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (560)
Q Consensus 405 ~~~~~~g~~~~~~~~~~~~~~~~~l~~--~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g 482 (560)
+++++++.+++.+.++++.+.++.|.+ +.|.+++++ |+| +++|++++|+|||+|.+++||+|||||+|++|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~---r~g----~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g 75 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVL---RNG----WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG 75 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEE---ECC----eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence 456778999999999999999999998 889999998 666 57899999999999999999999999999999
Q ss_pred cceeecccccCCCcccccCCCCcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhh-hccc
Q 008590 483 TSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVS-FFML 559 (560)
Q Consensus 483 ~~~vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~-~~~~ 559 (560)
.+.||||+|||||.|+.|++||.+++||.+.+|.++++|+++|.+|++++|..++++++..|+|+|+.+|+++ .+|+
T Consensus 76 ~~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~ 153 (499)
T TIGR01494 76 SCFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFI 153 (499)
T ss_pred cEEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988999999999999 6654
No 22
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.9e-25 Score=229.35 Aligned_cols=157 Identities=23% Similarity=0.353 Sum_probs=144.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcc
Q 008590 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 476 (560)
Q Consensus 397 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~D 476 (560)
+|+.+.+|.+.+.+.-....++++++.+++++|.++.|+.+.|+ |+| +...++.++|+|||+|.++.||+||||
T Consensus 77 ~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~---R~g---k~~~i~A~eLVPGDiV~l~vGDkVPAD 150 (972)
T KOG0202|consen 77 DFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVL---RSG---KLQHILARELVPGDIVELKVGDKIPAD 150 (972)
T ss_pred hcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEE---ecC---cccceehhccCCCCEEEEecCCccccc
Confidence 55677777777778888888999999999999999999999999 888 788999999999999999999999999
Q ss_pred eEEEeccce-eecccccCCCcccccCCC--------------CcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhh
Q 008590 477 GIVVWGTSY-VNESMVTGEAVPVLKEIN--------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ 541 (560)
Q Consensus 477 g~v~~g~~~-vdes~lTGEs~pv~k~~g--------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~ 541 (560)
-++++-.++ ||||+|||||.|+.|... +.+|+||.+..|.++..|..||.+|.+|+|.+++++.+
T Consensus 151 lRl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e 230 (972)
T KOG0202|consen 151 LRLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATE 230 (972)
T ss_pred eeEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccC
Confidence 999999988 999999999999999432 33999999999999999999999999999999999999
Q ss_pred ccCChhHHHHhHhhhccc
Q 008590 542 MSKAPIQKFADFVSFFML 559 (560)
Q Consensus 542 ~~k~~~q~~~d~~~~~~~ 559 (560)
+.|+|+|+..|++.+++.
T Consensus 231 ~~kTPLqk~ld~~G~qLs 248 (972)
T KOG0202|consen 231 SPKTPLQKKLDEFGKQLS 248 (972)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 999999999999988764
No 23
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.2e-23 Score=213.85 Aligned_cols=156 Identities=20% Similarity=0.321 Sum_probs=143.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCc
Q 008590 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPA 475 (560)
Q Consensus 396 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~ 475 (560)
..|.....|+.+++++..+....++++.++...|+.-...++.|+ ||| ++.|++.++|+||||+.++.|+.||+
T Consensus 95 ~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVl---RDG---kw~E~eAs~lVPGDIlsik~GdIiPa 168 (942)
T KOG0205|consen 95 PDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVL---RDG---KWSEQEASILVPGDILSIKLGDIIPA 168 (942)
T ss_pred cchhhhhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEe---ecC---eeeeeeccccccCceeeeccCCEecC
Confidence 344446677778888999998899999999999998888899999 999 88999999999999999999999999
Q ss_pred ceEEEeccce-eecccccCCCcccccCCCCcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHh
Q 008590 476 DGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFV 554 (560)
Q Consensus 476 Dg~v~~g~~~-vdes~lTGEs~pv~k~~g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~ 554 (560)
||++++|+-+ ||+|.|||||.||+|++||.+|+||.+.+|.+.+.|++||.+|..|+-.++|.. ....-++|+.+.-+
T Consensus 169 DaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkVLt~I 247 (942)
T KOG0205|consen 169 DARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTGI 247 (942)
T ss_pred ccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHHHHhh
Confidence 9999999977 999999999999999999999999999999999999999999999999999999 56789999999988
Q ss_pred hhcc
Q 008590 555 SFFM 558 (560)
Q Consensus 555 ~~~~ 558 (560)
.++.
T Consensus 248 Gn~c 251 (942)
T KOG0205|consen 248 GNFC 251 (942)
T ss_pred hhHH
Confidence 8764
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.89 E-value=1.4e-22 Score=233.59 Aligned_cols=156 Identities=22% Similarity=0.297 Sum_probs=138.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEc--CCCcc
Q 008590 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVL--PGTKL 473 (560)
Q Consensus 396 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~--~g~~i 473 (560)
.||..+.+++++++++..+..+.++|+.+.++++.. .+..++|+ ||| ++++|+.++|+|||+|.++ +|++|
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~---Rdg---~~~~I~s~eLvpGDiv~l~~~~g~~i 263 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVI---RNG---KWVTIASDELVPGDIVSIPRPEEKTM 263 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEE---ECC---EEEEEEcccCCCCCEEEEecCCCCEe
Confidence 455668888888888999999999999888888654 46788888 888 8899999999999999999 99999
Q ss_pred CcceEEEeccceeecccccCCCcccccCCC------C------------cEEEeeeeec-------ceEEEEEEEecchh
Q 008590 474 PADGIVVWGTSYVNESMVTGEAVPVLKEIN------S------------PVIGGTINLH-------GVLHIQATKVGSDA 528 (560)
Q Consensus 474 P~Dg~v~~g~~~vdes~lTGEs~pv~k~~g------~------------~v~aGt~~~~-------g~~~~~v~~~g~~t 528 (560)
||||+|++|+..||||+|||||.|+.|.+. + .+|+||.+++ |.+.++|++||.+|
T Consensus 264 PaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T 343 (1054)
T TIGR01657 264 PCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFST 343 (1054)
T ss_pred cceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccc
Confidence 999999999999999999999999999862 2 3999999985 88999999999999
Q ss_pred HHHHHHHHHHHhhccCChhHHHHhHhhhcc
Q 008590 529 VLSQIISLVETAQMSKAPIQKFADFVSFFM 558 (560)
Q Consensus 529 ~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~ 558 (560)
..|+|.+++...+..++++++.+.++..++
T Consensus 344 ~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l 373 (1054)
T TIGR01657 344 SKGQLVRSILYPKPRVFKFYKDSFKFILFL 373 (1054)
T ss_pred cchHHHHHhhCCCCCCCchHHHHHHHHHHH
Confidence 999999999998888999999988887643
No 25
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5e-22 Score=224.80 Aligned_cols=151 Identities=23% Similarity=0.350 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEe
Q 008590 402 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVW 481 (560)
Q Consensus 402 ~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~ 481 (560)
.++++++.++..+...++.++.+++++|.++.+.++.|+ ||| ++.+++.++|+|||+|.+++||+||||+++++
T Consensus 107 ~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~---R~g---~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~ 180 (917)
T COG0474 107 IVILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVL---RDG---KFVEIPASELVPGDIVLLEAGDVVPADLRLLE 180 (917)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE---eCC---cEEEecHHHCCCCcEEEECCCCccccceEEEE
Confidence 344455555566667777778888888888889999999 888 89999999999999999999999999999999
Q ss_pred ccc-eeecccccCCCcccccCC--------------CCcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCCh
Q 008590 482 GTS-YVNESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAP 546 (560)
Q Consensus 482 g~~-~vdes~lTGEs~pv~k~~--------------g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~ 546 (560)
++. .||||+|||||.|+.|.+ .+.+|+||.+.+|.+...|++||.+|.+|++..++......++|
T Consensus 181 ~~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~ 260 (917)
T COG0474 181 SSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTP 260 (917)
T ss_pred ecCceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCc
Confidence 999 699999999999999963 46699999999999999999999999999999999998888999
Q ss_pred hHHHHhHhhhcc
Q 008590 547 IQKFADFVSFFM 558 (560)
Q Consensus 547 ~q~~~d~~~~~~ 558 (560)
+|+.+++++.++
T Consensus 261 l~~~l~~~~~~l 272 (917)
T COG0474 261 LQRKLNKLGKFL 272 (917)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 26
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.3e-22 Score=210.82 Aligned_cols=156 Identities=22% Similarity=0.343 Sum_probs=128.8
Q ss_pred CCCchhhhHHHHHHHHH--HHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCC
Q 008590 393 WSPTYFETSAMLITFVL--FGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPG 470 (560)
Q Consensus 393 ~~~~~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g 470 (560)
...+|++.+++++.+++ +-..+.+|.+.+..+.+++ .....+..|+ |+| +..+|++.+|++||++.++-|
T Consensus 178 ~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~--~k~~~k~~Vi---R~G---~r~~isI~diVVGDIv~lk~G 249 (1034)
T KOG0204|consen 178 IEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQK--EKRNIKFQVI---RGG---RRQQISIYDLVVGDIVQLKIG 249 (1034)
T ss_pred CCcccccchhheeeEEEEEEEeecchhHHhhhhhhhhh--hhhceEEEEE---ECC---EEEEEEEeeeeeccEEEeecC
Confidence 34567776666544332 3344555555555554443 2334577777 888 889999999999999999999
Q ss_pred CccCcceEEEeccce-eecccccCCCcccccCC--CCcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChh
Q 008590 471 TKLPADGIVVWGTSY-VNESMVTGEAVPVLKEI--NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPI 547 (560)
Q Consensus 471 ~~iP~Dg~v~~g~~~-vdes~lTGEs~pv~k~~--g~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~ 547 (560)
|.+||||++++|..+ +|||++||||.++.|.+ ...+++||.+.+|..++.|+++|.+|..|++..++.+...+++|+
T Consensus 250 DqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpL 329 (1034)
T KOG0204|consen 250 DQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPL 329 (1034)
T ss_pred CccccceEEEeccceeEecccccCCCcceeccCCCCCeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcH
Confidence 999999999999887 99999999999999987 456999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhh
Q 008590 548 QKFADFVSF 556 (560)
Q Consensus 548 q~~~d~~~~ 556 (560)
|-.++++|-
T Consensus 330 Q~kL~~lA~ 338 (1034)
T KOG0204|consen 330 QVKLNGLAT 338 (1034)
T ss_pred HHHHHHHHH
Confidence 999988874
No 27
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.6e-21 Score=189.09 Aligned_cols=195 Identities=28% Similarity=0.354 Sum_probs=140.7
Q ss_pred HHHHHHHHHHcCCC---ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhh-hHHHHHHHHHHHHHHHHHHhccHHHH
Q 008590 350 FYTAAGRALRNGST---NMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFE-TSAMLITFVLFGKYLEILAKGKTSDA 425 (560)
Q Consensus 350 ~~~~a~~~l~~~~~---~md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~ 425 (560)
=++.+|+.|..+.. -..+++.++++...++.++--+++.. .....|.. -..++.+-+++..+-|..++.|....
T Consensus 16 A~~~af~KL~P~~~~kNPVMFvv~vg~~lt~~l~~~~~lfg~~--~~~~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAq 93 (681)
T COG2216 16 ALKDAFKKLNPRVLVKNPVMFVVEVGSILTTFLTIFPDLFGGT--GGSRLFNLAITIILWFTVLFANFAEAVAEGRGKAQ 93 (681)
T ss_pred HHHHHHHhcChHHhhhCCeEEeehHHHHHHHHHHHhhhhcCCC--CcchhhHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 34455555533321 23445556665555433332222110 11222322 22333444467788888888776555
Q ss_pred HHHHHhcCCc-eEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEeccceeecccccCCCcccccCCC-
Q 008590 426 IKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEIN- 503 (560)
Q Consensus 426 ~~~l~~~~~~-~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g- 503 (560)
-.+|...+.+ .++++. .+| ..+.++..+|+.||+|+|.+||.||.||.|++|.++||||.+||||.||-|++|
T Consensus 94 AdsLr~~~~~~~A~~l~--~~g---~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~asVdESAITGESaPViresGg 168 (681)
T COG2216 94 ADSLRKTKTETIARLLR--ADG---SIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVASVDESAITGESAPVIRESGG 168 (681)
T ss_pred HHHHHHHHHHHHHHHhc--CCC---CeeeccccccccCCEEEEecCCCccCCCeEEeeeeecchhhccCCCcceeeccCC
Confidence 5555444332 455542 346 789999999999999999999999999999999999999999999999999998
Q ss_pred --CcEEEeeeeecceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHH
Q 008590 504 --SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551 (560)
Q Consensus 504 --~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~ 551 (560)
+.|-.||.+++..+++++++..++|.+.|++.+||.++.+|||=+--+
T Consensus 169 D~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL 218 (681)
T COG2216 169 DFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEIAL 218 (681)
T ss_pred CcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHH
Confidence 779999999999999999999999999999999999999999966433
No 28
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.4e-17 Score=177.75 Aligned_cols=168 Identities=20% Similarity=0.330 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEe
Q 008590 375 AAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREI 454 (560)
Q Consensus 375 ~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v 454 (560)
.-|++..|+++. |..+.|++.|..|+++....-.+..+..++.++.++++.... ..+.|+ |+| .+++|
T Consensus 196 PfYlFQ~fSv~l-----W~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~-~~V~V~---R~g---~~~ti 263 (1140)
T KOG0208|consen 196 PFYLFQAFSVAL-----WLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFT-CPVTVI---RDG---FWETV 263 (1140)
T ss_pred hHHHHHhHHhhh-----hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEE---ECC---EEEEE
Confidence 345555555443 334566666777777777777888888888888888876543 567777 788 89999
Q ss_pred eCCCcCcCCEEEEcC-CCccCcceEEEeccceeecccccCCCcccccCCCC-------------------cEEEeeeee-
Q 008590 455 DALLIQSGDTLKVLP-GTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINS-------------------PVIGGTINL- 513 (560)
Q Consensus 455 ~~~~l~~GDii~v~~-g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g~-------------------~v~aGt~~~- 513 (560)
+.++|+|||++.+.+ |-..|||+++++|++.||||+|||||.||.|.+-. .+|+||.++
T Consensus 264 ~S~eLVPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq 343 (1140)
T KOG0208|consen 264 DSSELVPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQ 343 (1140)
T ss_pred eccccccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEE
Confidence 999999999999999 89999999999999999999999999999997742 389999987
Q ss_pred -----cceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHh
Q 008590 514 -----HGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFV 554 (560)
Q Consensus 514 -----~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~ 554 (560)
++.+.+.|.+||..|.-||+++.+-..+.....+-+-+-+|
T Consensus 344 ~r~~~g~~v~a~V~RTGF~T~KGqLVRsilyPkP~~fkfyrds~~f 389 (1140)
T KOG0208|consen 344 ARAYLGGPVLAMVLRTGFSTTKGQLVRSILYPKPVNFKFYRDSFKF 389 (1140)
T ss_pred eecCCCCceEEEEEeccccccccHHHHhhcCCCCcccHHHHHHHHH
Confidence 46799999999999999999999988766555555544444
No 29
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.67 E-value=2.9e-16 Score=181.91 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=119.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCC-CcceeeEEeeCCCcCcCCEEEEcCCCccC
Q 008590 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKV-GKCIEEREIDALLIQSGDTLKVLPGTKLP 474 (560)
Q Consensus 396 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-g~~~~~~~v~~~~l~~GDii~v~~g~~iP 474 (560)
.++...++++++..+.+++|++.++++.+.+ .+..++|+ |+ | ++.++++++|++||+|.+++||+||
T Consensus 52 t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~------n~~~~~v~---~~~~---~~~~i~~~~l~~GDiv~l~~g~~iP 119 (1057)
T TIGR01652 52 TSIVPLAFVLIVTAIKEAIEDIRRRRRDKEV------NNRLTEVL---EGHG---QFVEIPWKDLRVGDIVKVKKDERIP 119 (1057)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHhHHHH------hCcEEEEE---CCCC---cEEEeeeecccCCCEEEEcCCCccc
Confidence 3444455556666789999999998887654 34688888 65 6 6789999999999999999999999
Q ss_pred cceEEEe-----ccceeecccccCCCcccccCCC----------------------------------------------
Q 008590 475 ADGIVVW-----GTSYVNESMVTGEAVPVLKEIN---------------------------------------------- 503 (560)
Q Consensus 475 ~Dg~v~~-----g~~~vdes~lTGEs~pv~k~~g---------------------------------------------- 503 (560)
||++|++ |.+.||||.||||+.|+.|++.
T Consensus 120 aD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~ 199 (1057)
T TIGR01652 120 ADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLS 199 (1057)
T ss_pred ceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCcccCC
Confidence 9999997 7788999999999999999742
Q ss_pred --CcEEEeeeeec-ceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhhc
Q 008590 504 --SPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSFF 557 (560)
Q Consensus 504 --~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~ 557 (560)
+.++.||.+.+ |.+...|.+||.+|.+++. ....+.+++++|+.++++..+
T Consensus 200 ~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n---~~~~~~k~s~le~~ln~~~~~ 253 (1057)
T TIGR01652 200 PDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRN---ATQAPSKRSRLEKELNFLIII 253 (1057)
T ss_pred HHHhHhcCCEecCCCeEEEEEEEEchhhhhhhc---CCCCcccccHHHHHHhhHHHH
Confidence 23567777777 8999999999999977653 444566789999999998765
No 30
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.7e-17 Score=171.95 Aligned_cols=184 Identities=23% Similarity=0.309 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecC
Q 008590 366 DVLVALGTSAAYF-YSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (560)
Q Consensus 366 d~Li~l~~~~a~~-~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 444 (560)
..|+.+++..+|+ |++... ............+.+++..+.+.-.+..++..|..+.+..+..+.|..++|+ |
T Consensus 97 ~ill~~~a~l~~~~y~~~~s----~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~Vi---R 169 (1019)
T KOG0203|consen 97 SILLWIGAILCFVAYGIQAS----TEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVI---R 169 (1019)
T ss_pred HHHHHHHHHHHHHHHhhhcc----cCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheee---e
Confidence 3556666666655 322211 1111122233335555555555556778888899999999999999999999 8
Q ss_pred CCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEeccce-eecccccCCCcccccCCC----------CcEEEeeeee
Q 008590 445 VGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEIN----------SPVIGGTINL 513 (560)
Q Consensus 445 ~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~-vdes~lTGEs~pv~k~~g----------~~v~aGt~~~ 513 (560)
|| ....+..++|++||++.++-|++||||-+|+++... ||+|+|||||.|....+. +.-|.+|.++
T Consensus 170 dg---~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~v 246 (1019)
T KOG0203|consen 170 DG---EKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCV 246 (1019)
T ss_pred cc---eeEEechhhcccccceeeccCCcccceeEEEEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEe
Confidence 98 788999999999999999999999999999999987 999999999999998764 3479999999
Q ss_pred cceEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhhccc
Q 008590 514 HGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSFFML 559 (560)
Q Consensus 514 ~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~~~ 559 (560)
+|..+..|.++|++|.+|+|..+.......++|++..++++..+.+
T Consensus 247 eG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~~~~ei~~fi~~it 292 (1019)
T KOG0203|consen 247 EGTGRGIVIATGDRTVMGRIASLASGLEDGKTPIAKEIEHFIHIIT 292 (1019)
T ss_pred cceEEEEEEecCCceEEeehhhhhccCCCCCCcchhhhhchHHHHH
Confidence 9999999999999999999999999989999999999999887643
No 31
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.62 E-value=5.9e-15 Score=157.70 Aligned_cols=144 Identities=42% Similarity=0.681 Sum_probs=133.2
Q ss_pred EEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhhhhccCCCCCCCCC
Q 008590 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQG 126 (560)
Q Consensus 47 ~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~~ 126 (560)
+-.+.+.||+|.+|+.++++.+++.+|+.++.+.+..+++.+.||+...+.+.+.+.++++||.+..++..... .
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~----~- 144 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGN----S- 144 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCC----C-
Confidence 45799999999999999999999999999999999999999999999999999999999999999876653321 1
Q ss_pred eeEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 008590 127 TIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (560)
Q Consensus 127 ~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~ 195 (560)
..+..|.|.||.|++|+.++++.+.+++||.+++++..++++.|.||+..+++++|.+.+++.||++.+
T Consensus 145 ~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~ 213 (951)
T KOG0207|consen 145 NQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASV 213 (951)
T ss_pred CCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhccccee
Confidence 157899999999999999999999999999999999999999999999999999999999999999865
No 32
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.56 E-value=3e-14 Score=164.15 Aligned_cols=147 Identities=13% Similarity=0.127 Sum_probs=117.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCc
Q 008590 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPA 475 (560)
Q Consensus 396 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~ 475 (560)
.++-..++++++..++..+|++.++++.+.+. +..++++ ++| .+.++++++|++||+|.|++||+|||
T Consensus 138 t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N------~~~~~v~---~~~---~~~~i~~~~i~vGDiv~v~~ge~iPa 205 (1178)
T PLN03190 138 ASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN------NRLAWVL---VDD---QFQEKKWKDIRVGEIIKIQANDTLPC 205 (1178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------CcEEEEE---ECC---eEEEEeHHHCCCCCEEEECCCCEeee
Confidence 34445666777777999999999999988653 4678888 677 77899999999999999999999999
Q ss_pred ceEEEe-----ccceeecccccCCCcccccCCCCc-------------------------EEEeeeeecc----------
Q 008590 476 DGIVVW-----GTSYVNESMVTGEAVPVLKEINSP-------------------------VIGGTINLHG---------- 515 (560)
Q Consensus 476 Dg~v~~-----g~~~vdes~lTGEs~pv~k~~g~~-------------------------v~aGt~~~~g---------- 515 (560)
||++++ |.+.||+|.||||+.|+.|.+++. -|-|+...+|
T Consensus 206 D~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~ 285 (1178)
T PLN03190 206 DMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNI 285 (1178)
T ss_pred eEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccce
Confidence 999998 889999999999999999987632 1344444433
Q ss_pred -----------eEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhhc
Q 008590 516 -----------VLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSFF 557 (560)
Q Consensus 516 -----------~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~~ 557 (560)
.+...|+.+|.+|. +...-...+.+++++++.++++.-+
T Consensus 286 llRG~~LrnT~~i~GvVVYTG~dTK---~~~N~~~~~~K~S~le~~~N~~vi~ 335 (1178)
T PLN03190 286 ILRGCELKNTAWAIGVAVYCGRETK---AMLNNSGAPSKRSRLETRMNLEIII 335 (1178)
T ss_pred eeccceecCCceEEEEEEEechhhh---HhhcCCCCCCCccHHHHHHhHHHHH
Confidence 48899999999996 3333334456789999999998654
No 33
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=99.51 E-value=4.7e-14 Score=148.04 Aligned_cols=157 Identities=17% Similarity=0.262 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcC--CceEEEEEecCCCcce
Q 008590 372 GTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELA--PATALLVVKDKVGKCI 449 (560)
Q Consensus 372 ~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~--~~~~~v~~~~~~g~~~ 449 (560)
++..-|++.+|+...+- .+.||+.+.+-++++. .+|.....+..+.+.++..+. |....|. |++
T Consensus 196 A~aPfFVFQVFcvgLWC-----LDeyWYySlFtLfMli---~fE~tlV~Qrm~~lse~R~Mg~kpy~I~v~---R~k--- 261 (1160)
T KOG0209|consen 196 AVAPFFVFQVFCVGLWC-----LDEYWYYSLFTLFMLI---AFEATLVKQRMRTLSEFRTMGNKPYTINVY---RNK--- 261 (1160)
T ss_pred ccCceeeHhHHhHHHHH-----hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCceEEEEE---ecC---
Confidence 44444555555543321 2455655555444444 455555555666666665554 5556666 777
Q ss_pred eeEEeeCCCcCcCCEEEEcC---CCccCcceEEEeccceeecccccCCCcccccCCC-------------C----cEEEe
Q 008590 450 EEREIDALLIQSGDTLKVLP---GTKLPADGIVVWGTSYVNESMVTGEAVPVLKEIN-------------S----PVIGG 509 (560)
Q Consensus 450 ~~~~v~~~~l~~GDii~v~~---g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~g-------------~----~v~aG 509 (560)
+|+.+..++|.|||+|.|.. ...||||.+++.|++.||||+|||||.|.-|.+- | .+|+|
T Consensus 262 KW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGG 341 (1160)
T KOG0209|consen 262 KWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGG 341 (1160)
T ss_pred cceeccccccCCCceEEeccCcccCcCCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccceEEEEcC
Confidence 78999999999999999998 4679999999999999999999999999999762 2 28999
Q ss_pred eeee-------------cceEEEEEEEecchhHHHHHHHHHHHhhc
Q 008590 510 TINL-------------HGVLHIQATKVGSDAVLSQIISLVETAQM 542 (560)
Q Consensus 510 t~~~-------------~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 542 (560)
|+++ +|.+...|.+||.+|..|++.+.+--..+
T Consensus 342 TkivQht~p~~~slk~pDggc~a~VlrTGFeTSQGkLvRtilf~ae 387 (1160)
T KOG0209|consen 342 TKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQGKLVRTILFSAE 387 (1160)
T ss_pred ceEEEecCCccccccCCCCCeEEEEEeccccccCCceeeeEEecce
Confidence 9987 56799999999999999999887765443
No 34
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.30 E-value=1.2e-11 Score=92.76 Aligned_cols=62 Identities=45% Similarity=0.737 Sum_probs=59.6
Q ss_pred EeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCc
Q 008590 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192 (560)
Q Consensus 131 ~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~ 192 (560)
+|+|+||+|++|+.+|+++|.+++||.++.+|+.++++.|.|++..+++++|.+.|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 47899999999999999999999999999999999999999999888999999999999995
No 35
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.25 E-value=1.1e-10 Score=132.86 Aligned_cols=142 Identities=29% Similarity=0.492 Sum_probs=113.4
Q ss_pred eEEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhhhhccCCC--C--
Q 008590 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTS--G-- 121 (560)
Q Consensus 46 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~~~~~--~-- 121 (560)
+++++.|+||+|++|+.+|++++++++||..+.+++. +..+.. ..+.+.+.+.++++||+++...++... .
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~---~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTG---TASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEe---cCCHHHHHHHHHhcCCcccccccccccccccc
Confidence 4678999999999999999999999999999999984 444443 246789999999999998765321100 0
Q ss_pred -------------C--CCCCeeEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHH
Q 008590 122 -------------P--KPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAI 186 (560)
Q Consensus 122 -------------~--~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l 186 (560)
+ ......+..+.++||+|++|+..+++.+.+.+|+.++.+++.+++..+.+ ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 0 00012356788999999999999999999999999999999999988873 24678888889
Q ss_pred HhcCCceee
Q 008590 187 EDAGFEASF 195 (560)
Q Consensus 187 ~~~G~~~~~ 195 (560)
+++||.+..
T Consensus 155 ~~~Gy~a~~ 163 (834)
T PRK10671 155 EKAGYGAEA 163 (834)
T ss_pred HhcCCCccc
Confidence 999998753
No 36
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.20 E-value=8.8e-11 Score=90.05 Aligned_cols=68 Identities=32% Similarity=0.558 Sum_probs=64.3
Q ss_pred eEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 008590 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (560)
Q Consensus 128 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~ 195 (560)
+...+.++||+|.+|+.+|+++|.+++||.++.+++..+.+.+.||+...+.++|.++++.+||.+..
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 45789999999999999999999999999999999999999999999889999999999999998764
No 37
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.20 E-value=1e-10 Score=87.68 Aligned_cols=62 Identities=44% Similarity=0.670 Sum_probs=59.1
Q ss_pred EEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCc
Q 008590 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFE 110 (560)
Q Consensus 49 ~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 110 (560)
+|.|+||+|++|+.+|+++|++++||.++.+|+.++++.+.++++..+++++.+.++++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 58899999999999999999999999999999999999999998877889999999999995
No 38
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.8e-10 Score=88.30 Aligned_cols=68 Identities=44% Similarity=0.663 Sum_probs=64.0
Q ss_pred ceEEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchh
Q 008590 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (560)
Q Consensus 45 ~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 112 (560)
|++..+.++||+|.+|+.+|+++|++++||..+.+++..++..+.+++...+.+++.++++++||.+.
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~ 68 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE 68 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence 45678999999999999999999999999999999999999999999888899999999999999874
No 39
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.2e-06 Score=91.69 Aligned_cols=123 Identities=19% Similarity=0.283 Sum_probs=95.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccC
Q 008590 395 PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLP 474 (560)
Q Consensus 395 ~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP 474 (560)
..|+...++++++.++-+.+++..+++..+..++ +...+.. ++|. ...|.+++++||+|.+..+++||
T Consensus 129 ~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~lt--r~~~----~~~~Ss~i~vGDvi~v~K~~RVP 196 (1051)
T KOG0210|consen 129 STYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLT--RDGT----RREPSSDIKVGDVIIVHKDERVP 196 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeec--cCCc----ccccccccccccEEEEecCCcCC
Confidence 4577777778888888888998887766554432 3444443 5652 33389999999999999999999
Q ss_pred cceEEE-----eccceeecccccCCCcccccCC-----------------------------------------------
Q 008590 475 ADGIVV-----WGTSYVNESMVTGEAVPVLKEI----------------------------------------------- 502 (560)
Q Consensus 475 ~Dg~v~-----~g~~~vdes~lTGEs~pv~k~~----------------------------------------------- 502 (560)
||.+++ +|++++-.--|.||..-..|-|
T Consensus 197 ADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsv 276 (1051)
T KOG0210|consen 197 ADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSV 276 (1051)
T ss_pred cceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccc
Confidence 999999 6788888888999986333311
Q ss_pred CCcEEEeeeeecceEEEEEEEecchhH
Q 008590 503 NSPVIGGTINLHGVLHIQATKVGSDAV 529 (560)
Q Consensus 503 g~~v~aGt~~~~g~~~~~v~~~g~~t~ 529 (560)
.+.++|+|++.+|.+...|..+|.+|+
T Consensus 277 entLWanTVvAs~t~~gvVvYTG~dtR 303 (1051)
T KOG0210|consen 277 ENTLWANTVVASGTAIGVVVYTGRDTR 303 (1051)
T ss_pred cceeeeeeeEecCcEEEEEEEecccHH
Confidence 134899999999999999999999985
No 40
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.07 E-value=8e-06 Score=89.72 Aligned_cols=65 Identities=45% Similarity=0.733 Sum_probs=60.9
Q ss_pred EEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCC-HHHHHHHHHhcCCcee
Q 008590 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVIS-KDDIANAIEDAGFEAS 194 (560)
Q Consensus 129 ~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~-~~~i~~~l~~~G~~~~ 194 (560)
+..+.++||+|++|+++|| +|++++||.++.+|+.++++.+.||+...+ .+++...++..||.+.
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~ 68 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSAR 68 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCcccc
Confidence 5679999999999999999 999999999999999999999999987666 7899999999999875
No 41
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.69 E-value=0.0003 Score=51.58 Aligned_cols=65 Identities=34% Similarity=0.493 Sum_probs=57.5
Q ss_pred EEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCce
Q 008590 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193 (560)
Q Consensus 129 ~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~ 193 (560)
+..+.+.|+.|..|+..+++.+...+++....+++....+.+.|++...+...+...+...||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 45689999999999999999999999999999999999999999877667778877778888864
No 42
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.68 E-value=0.00038 Score=51.05 Aligned_cols=67 Identities=34% Similarity=0.523 Sum_probs=56.8
Q ss_pred ceEEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCch
Q 008590 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (560)
Q Consensus 45 ~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 111 (560)
+++..+.+.|++|..|...+++.+...+++....+++......+.+++.......+...+...||.+
T Consensus 1 ~~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 1 KQKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred CcEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 3566799999999999999999999999999999999999999998765556677766677778754
No 43
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=97.63 E-value=0.00028 Score=80.61 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCceEEEEEecCCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEE
Q 008590 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 479 (560)
Q Consensus 400 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v 479 (560)
...+++....+...+|++.+.+..+.+.. .++.|. +++. ..++..++++++||+|.+..++.+|||.++
T Consensus 86 pl~~vl~~t~iKd~~eD~rR~~~D~~iN~------~~~~v~---~~~~--~~~~~~wk~~~vGd~v~v~~~~~~paD~ll 154 (1151)
T KOG0206|consen 86 PLLFVLGITAIKDAIEDYRRHKQDKEVNN------RKVEVL---RGDG--CFVEKKWKDVRVGDIVRVEKDEFVPADLLL 154 (1151)
T ss_pred ceeeeehHHHHHHHHhhhhhhhccHHhhc------ceeEEe---cCCc--eeeeeccceeeeeeEEEeccCCccccceEE
Confidence 33445555568889999998888776653 466666 3321 368889999999999999999999999999
Q ss_pred E-----eccceeecccccCCCcccccCCC-----------------------------------------------CcEE
Q 008590 480 V-----WGTSYVNESMVTGEAVPVLKEIN-----------------------------------------------SPVI 507 (560)
Q Consensus 480 ~-----~g~~~vdes~lTGEs~pv~k~~g-----------------------------------------------~~v~ 507 (560)
+ +|.+.|+.+.|.||.-...|+.- +.++
T Consensus 155 Lsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Ll 234 (1151)
T KOG0206|consen 155 LSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDNLLL 234 (1151)
T ss_pred ecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHHccc
Confidence 9 55677999999999877666430 1133
Q ss_pred Eeeeeecc-eEEEEEEEecchhHHHHHHHHHHHhhccCChhHHHHhHhhh
Q 008590 508 GGTINLHG-VLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVSF 556 (560)
Q Consensus 508 aGt~~~~g-~~~~~v~~~g~~t~~~~i~~~~~~~~~~k~~~q~~~d~~~~ 556 (560)
-|+.+.+. -+...|+-+|.+|.+ ..--..++.+++++++..+++.-
T Consensus 235 rg~~lrNT~~v~G~vv~tG~dtK~---~~n~~~~~~Krs~ier~~n~~i~ 281 (1151)
T KOG0206|consen 235 RGSRLRNTEWVYGVVVFTGHDTKL---MQNSGKPPSKRSRIERKMNKIII 281 (1151)
T ss_pred CCceeccCcEEEEEEEEcCCcchH---HHhcCCCccccchhhhhhhhhHH
Confidence 44444444 367789999999954 44555578889999999887654
No 44
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00025 Score=63.66 Aligned_cols=66 Identities=30% Similarity=0.508 Sum_probs=57.9
Q ss_pred CceEEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 44 ~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
.+.+.+|.|. |+|.+|+..|++.|+.++|+.++++++..+.+.+.. ...+.++++.++.+|-++.+
T Consensus 5 ~~~~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~t---s~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 5 DTYEAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVET---SVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred CceeEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEc---cCChHHHHHHHHhhChheEE
Confidence 4566789998 999999999999999999999999999999999873 45689999999999977643
No 45
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00056 Score=61.47 Aligned_cols=65 Identities=32% Similarity=0.658 Sum_probs=57.7
Q ss_pred eEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 008590 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (560)
Q Consensus 128 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~ 196 (560)
....|.|+ |+|.+|++.+...|..++||.++++++..+.+.|. ....+.+|.+.|+.+|-++.+.
T Consensus 7 ~~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~---ts~p~s~i~~~le~tGr~Avl~ 71 (247)
T KOG4656|consen 7 YEAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVE---TSVPPSEIQNTLENTGRDAVLR 71 (247)
T ss_pred eeEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEE---ccCChHHHHHHHHhhChheEEe
Confidence 45677776 99999999999999999999999999999999999 5567899999999999887653
No 46
>PLN02957 copper, zinc superoxide dismutase
Probab=97.36 E-value=0.0011 Score=63.80 Aligned_cols=69 Identities=25% Similarity=0.446 Sum_probs=60.0
Q ss_pred eEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCC
Q 008590 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSG 200 (560)
Q Consensus 128 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~~~~ 200 (560)
+++.+.+ +|+|.+|+..+++.|.+++||..+.+++..+++.+.|+ ...+++.+.+++.||.+.+....+
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~~~ 74 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQGD 74 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecCCC
Confidence 4566888 69999999999999999999999999999999999983 467889999999999987665443
No 47
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.22 E-value=0.0013 Score=74.19 Aligned_cols=68 Identities=31% Similarity=0.510 Sum_probs=57.8
Q ss_pred CceEEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 44 ~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
...+..+.++||+|++|...+++.+.+.+||..+.+++.+++..+.+++. .. +++.+.+++.||.+..
T Consensus 51 ~~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~-~~-~~I~~aI~~~Gy~a~~ 118 (741)
T PRK11033 51 SGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADND-IR-AQVESAVQKAGFSLRD 118 (741)
T ss_pred CCceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEeccc-ch-HHHHHHHHhccccccc
Confidence 34466789999999999999999999999999999999999998888764 23 6777788889998754
No 48
>PLN02957 copper, zinc superoxide dismutase
Probab=97.02 E-value=0.0033 Score=60.53 Aligned_cols=67 Identities=24% Similarity=0.369 Sum_probs=57.5
Q ss_pred eEEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhhhhc
Q 008590 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAE 116 (560)
Q Consensus 46 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~ 116 (560)
.++.+.+ +|+|+.|+.++++.+++++|+..+.+++..+++.+.++ ...+++...+++.||.+.+...
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecC
Confidence 3456888 79999999999999999999999999999999999873 3678888899999999866543
No 49
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.002 Score=49.63 Aligned_cols=53 Identities=19% Similarity=0.400 Sum_probs=48.5
Q ss_pred CCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcC
Q 008590 135 GGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG 190 (560)
Q Consensus 135 ~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G 190 (560)
-.|+|.+|...|.+.+..++||.++.++...+++++. +..++..+.+.+.+.|
T Consensus 11 v~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~---g~~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 11 VNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVK---GNVDPVKLLKKLKKTG 63 (73)
T ss_pred ECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEE---EecCHHHHHHHHHhcC
Confidence 3599999999999999999999999999999999999 3478999999999866
No 50
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.003 Score=48.64 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=49.0
Q ss_pred EEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcC
Q 008590 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108 (560)
Q Consensus 50 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 108 (560)
...-.|+|.+|...|++.++.++||.++.++...+++++.-+ .++..+.+.+.+.|
T Consensus 8 v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 8 VLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred EEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 334469999999999999999999999999999999999854 57888888888766
No 51
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=92.91 E-value=1.1 Score=35.24 Aligned_cols=66 Identities=33% Similarity=0.534 Sum_probs=52.3
Q ss_pred EEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 008590 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (560)
Q Consensus 129 ~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~ 194 (560)
...+.+.++.|..|...++..+...+++.....+.......+.+++...+...+...+...||...
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 89 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSS 89 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeE
Confidence 345778999999999999999999999888888888888777776544456666666677887754
No 52
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=92.30 E-value=1.4 Score=34.53 Aligned_cols=65 Identities=37% Similarity=0.593 Sum_probs=49.1
Q ss_pred EEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCch
Q 008590 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (560)
Q Consensus 47 ~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 111 (560)
...+.+.++.|..|...++..+...+++.....+.......+.++........+.....+.||..
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS 88 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence 44677999999999999999999999988888888888876665443334555555556677654
No 53
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=91.73 E-value=18 Score=43.00 Aligned_cols=165 Identities=17% Similarity=0.290 Sum_probs=87.9
Q ss_pred EEEEEeCCCCChh----hHHHHHHHhcCCCCeeEEEEEecCCeEEEE--ECCCCCCHH----HHHHHHHhcC--Cchhhh
Q 008590 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNKADVV--FDPDLVKDE----DIKNAIEDAG--FEAEIL 114 (560)
Q Consensus 47 ~~~~~i~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~--~~~~~~~~~----~i~~~i~~~G--~~~~~~ 114 (560)
.+...-+|.+-.- -...+|++++.++|+.++.-.-..+...+. ++.+ .+.+ ++.+.+++.- .+..+-
T Consensus 44 ~V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~~~~ 122 (1021)
T PF00873_consen 44 SVTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPPGVE 122 (1021)
T ss_dssp EEEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-HHHH
T ss_pred EEEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCccccc
Confidence 3444445544322 345678899999999999988777777765 5543 2333 4444454431 222111
Q ss_pred hccCC-CCCCCCCeeEEEeecC--CCCch----hhHHHHHHHhcCCCCeeEEEeec-cCCeEEEEeCCCC-----CCHHH
Q 008590 115 AESST-SGPKPQGTIVGQYTIG--GMTCA----ACVNSVEGILRGLPGVKRAVVAL-ATSLGEVEYDPTV-----ISKDD 181 (560)
Q Consensus 115 ~~~~~-~~~~~~~~~~~~~~i~--gm~C~----~C~~~ie~~l~~~~gv~~~~v~~-~~~~~~v~~d~~~-----~~~~~ 181 (560)
.+.-. ..+.......+.+.-+ +++-. ...+.++..|.+++||.++.+.= ..+.+.|.+||.+ +++.+
T Consensus 123 ~p~i~~~~~~~~~i~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~ 202 (1021)
T PF00873_consen 123 EPQIFKFDPSDSPIMILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSD 202 (1021)
T ss_dssp HHEEEEEEEECCEEEEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHH
T ss_pred CCceeeccCCCceeEEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHH
Confidence 11000 0001112233444444 22321 23467999999999999998863 5668889998854 67889
Q ss_pred HHHHHHhcCCceee-eccCCceeEEEEEeccc
Q 008590 182 IANAIEDAGFEASF-VQSSGQDKILLQVTGVL 212 (560)
Q Consensus 182 i~~~l~~~G~~~~~-~~~~~~~~~~~~v~g~~ 212 (560)
+.+.|.+....... .-..+..+..++..|..
T Consensus 203 v~~~l~~~n~~~~~G~~~~~~~~~~i~~~~~~ 234 (1021)
T PF00873_consen 203 VAQALQANNVNQPAGTIEEGNQEILIRVDGEF 234 (1021)
T ss_dssp HHHHHHHHSCEEEEEEETTTTEEEEEEECES-
T ss_pred HHHHHHHhhhhccCCccchhhHHHhhhhhhhc
Confidence 99999987654422 11223344455555443
No 54
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=86.19 E-value=6.1 Score=25.72 Aligned_cols=58 Identities=48% Similarity=0.879 Sum_probs=41.7
Q ss_pred ecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCC
Q 008590 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGF 191 (560)
Q Consensus 133 ~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~ 191 (560)
.+.++.|..|...++..+...+++.....++......+.++.. .....+...+...|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 60 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE-VSPEELLEAIEDAGY 60 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC-CCHHHHHHHHHHcCC
Confidence 3578899999999999998889987777777777777776543 345554444454444
No 55
>PRK09577 multidrug efflux protein; Reviewed
Probab=84.49 E-value=97 Score=36.91 Aligned_cols=145 Identities=15% Similarity=0.191 Sum_probs=78.9
Q ss_pred EEEEEeCCCCChh----hHHHHHHHhcCCCCeeEEEEEecCCe--EEEEECCCCCCH----HHHHHHHHhcC--Cchhhh
Q 008590 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNK--ADVVFDPDLVKD----EDIKNAIEDAG--FEAEIL 114 (560)
Q Consensus 47 ~~~~~i~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~~~~~--~~v~~~~~~~~~----~~i~~~i~~~G--~~~~~~ 114 (560)
.+...-+|.+-.- -...+|++++.++|+.+++-.-..+. ..+.++.+. +. .++.+.+++.. ++..+.
T Consensus 44 ~V~t~~pGasp~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~~~ 122 (1032)
T PRK09577 44 SIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGV-NADLAAVEVQNRLKTVEARLPEPVR 122 (1032)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCcccc
Confidence 3444444554332 33467888999999998776444444 444555432 32 34555554331 211100
Q ss_pred hccCCC-CCCCCCeeEEEeecCC--CCch---h-hHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCC-----CCHHHH
Q 008590 115 AESSTS-GPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKDDI 182 (560)
Q Consensus 115 ~~~~~~-~~~~~~~~~~~~~i~g--m~C~---~-C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~-----~~~~~i 182 (560)
.+.... .........+.+..++ .+-. . -.+.++..|.++|||.++.++-....+.|..|+.. ++..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V 202 (1032)
T PRK09577 123 RDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDI 202 (1032)
T ss_pred cCCceEeccCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHH
Confidence 000000 0001111223333322 1111 1 24679999999999999999876666777777744 678899
Q ss_pred HHHHHhcCCc
Q 008590 183 ANAIEDAGFE 192 (560)
Q Consensus 183 ~~~l~~~G~~ 192 (560)
.+.|...+..
T Consensus 203 ~~~l~~~n~~ 212 (1032)
T PRK09577 203 ASAVRAHNAR 212 (1032)
T ss_pred HHHHHHhCCc
Confidence 9999886544
No 56
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=82.16 E-value=2.9 Score=37.89 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=40.9
Q ss_pred hhHHHHHhhhccCCCeeEEEeecCCCe-------------------EEEEeCCCCCChhHHHHHHHhc
Q 008590 215 LDAHFLEGILSNFKGVRQFRFDKISGE-------------------LEVLFDPEALSSRSLVDGIAGR 263 (560)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~vn~~~~~-------------------~~v~ydp~~~~~~~l~~~i~~~ 263 (560)
.|-+.+|..+..++||.++.+-.+++. +.|.|||..++.++|++..-..
T Consensus 11 GCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 11 GCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred CChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 577889999999999999887665543 7899999999999999876554
No 57
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=81.53 E-value=3.1 Score=37.68 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=41.9
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeeccCCe-------------------EEEEeCCCCCCHHHHHHHHHhc
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALATSL-------------------GEVEYDPTVISKDDIANAIEDA 189 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~~~~-------------------~~v~~d~~~~~~~~i~~~l~~~ 189 (560)
++|=+-+|..+.+++||.++.+-++.+. +.|.|||..++.++|.+..-+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 4688999999999999999888766554 8999999999999998866543
No 58
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=81.35 E-value=1.3e+02 Score=35.98 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCCCeeEEEEEe---cCCeEEEEECCCCCCH----HHHHHHHHhc--CCchhhhhccCCC-CCCCCCeeEE
Q 008590 61 SNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVKD----EDIKNAIEDA--GFEAEILAESSTS-GPKPQGTIVG 130 (560)
Q Consensus 61 ~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~--G~~~~~~~~~~~~-~~~~~~~~~~ 130 (560)
...+|++++.++|+.+++-.- ..+...+.++.+. +. .++.+.+++. .++..+..+.... .........+
T Consensus 62 t~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v~~~~~~~~~~~~~~v~~~ 140 (1037)
T PRK10555 62 TQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTI 140 (1037)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCccccCCceEeCCCCCceEEE
Confidence 456788999999999988742 2344666676543 33 3455555432 1221110010000 0011112223
Q ss_pred Eeec-CC-CCc----hhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCC-----CCHHHHHHHHHhc
Q 008590 131 QYTI-GG-MTC----AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKDDIANAIEDA 189 (560)
Q Consensus 131 ~~~i-~g-m~C----~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~-----~~~~~i~~~l~~~ 189 (560)
.+.- ++ +.- .--++.++..|++++||.++.++-..+.+.|..|+.+ ++..++.+.|...
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~~ 210 (1037)
T PRK10555 141 AFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIESQ 210 (1037)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 3322 22 221 1134678999999999999999866677889998754 6788999999864
No 59
>PRK13748 putative mercuric reductase; Provisional
Probab=80.18 E-value=7.5 Score=42.69 Aligned_cols=66 Identities=27% Similarity=0.533 Sum_probs=54.0
Q ss_pred EeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 008590 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (560)
Q Consensus 131 ~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~ 197 (560)
.+.+.+|+|.+|..+++..+...+++....+++..+...+.+++. .+...+...++..||......
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~~~~~~ 68 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYRATLAD 68 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCeeeccC
Confidence 356899999999999999999999999899999999888887653 566677777788998865443
No 60
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.36 E-value=6.3 Score=42.70 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=31.8
Q ss_pred CCCcceeeEEeeCCCcCcCCEEEEcCCCccCcceEEEecc
Q 008590 444 KVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGT 483 (560)
Q Consensus 444 ~~g~~~~~~~v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~ 483 (560)
||| ..+++|...|+.||+|.++||..-||.+.=+.|+
T Consensus 162 RDG---hlm~lP~~LLVeGDiIa~RPGQeafan~~g~~dd 198 (1354)
T KOG4383|consen 162 RDG---HLMELPRILLVEGDIIAFRPGQEAFANCEGFDDD 198 (1354)
T ss_pred ccC---eeeecceeEEEeccEEEecCCccccccccccCCC
Confidence 678 6789999999999999999999999877655553
No 61
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=79.23 E-value=14 Score=23.76 Aligned_cols=41 Identities=46% Similarity=0.710 Sum_probs=32.2
Q ss_pred EeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEEC
Q 008590 51 GVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFD 91 (560)
Q Consensus 51 ~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~ 91 (560)
.+.++.|..|...++..+...+++.....++......+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYD 43 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEEC
Confidence 36788999999999998888888777777766666555554
No 62
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=78.20 E-value=20 Score=26.85 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=42.0
Q ss_pred EeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 008590 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (560)
Q Consensus 131 ~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~ 196 (560)
++.+.|..|+...-.+.++|.+++. .+.+.|..|.. ...++|...++..||.....
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~-~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDP-AAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESST-THHHHHHHHHHHHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCc-cHHHHHHHHHHHCCCEEEEE
Confidence 5778999999999999999998753 24455565544 45789999999999985443
No 63
>PRK13748 putative mercuric reductase; Provisional
Probab=77.27 E-value=9.9 Score=41.73 Aligned_cols=65 Identities=26% Similarity=0.502 Sum_probs=51.5
Q ss_pred EEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhhh
Q 008590 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (560)
Q Consensus 49 ~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 114 (560)
.+.+.||+|+.|..+++..+...+++.....++..+...+.+++ ......+...+.++||.....
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~-~~~~~~i~~~i~~~g~~~~~~ 67 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVAGLGYRATLA 67 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECC-CCCHHHHHHHHHHcCCeeecc
Confidence 35689999999999999999999999989999888887777653 345566666677888876543
No 64
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=76.28 E-value=6.2 Score=35.10 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=39.9
Q ss_pred hhHHHHHhhhccCCCeeEEEeecCC--------------CeEEEEeCCCCCChhHHHHHHHhc
Q 008590 215 LDAHFLEGILSNFKGVRQFRFDKIS--------------GELEVLFDPEALSSRSLVDGIAGR 263 (560)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~vn~~~--------------~~~~v~ydp~~~~~~~l~~~i~~~ 263 (560)
.|-+-+|..+..++||.++.+-... +.+.|.|||..++.++|++..-..
T Consensus 9 GCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~ 71 (156)
T PRK05528 9 GCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFEI 71 (156)
T ss_pred CCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHHh
Confidence 5778889999999999998865543 347899999999999999876553
No 65
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=75.54 E-value=9.8 Score=28.55 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=42.1
Q ss_pred EEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 49 ~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
++.+.|+.||.....+.+++++++ ......+..+++ .+...+.......||....
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~---------~G~~l~v~~d~~-~~~~di~~~~~~~g~~~~~ 56 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELP---------PGEVLEVLVDDP-AAVEDIPRWCEENGYEVVE 56 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSG---------TT-EEEEEESST-THHHHHHHHHHHHTEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcC---------CCCEEEEEECCc-cHHHHHHHHHHHCCCEEEE
Confidence 577889999999999999999976 334566666664 3568899999999997543
No 66
>PRK11018 hypothetical protein; Provisional
Probab=74.42 E-value=35 Score=26.37 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=48.5
Q ss_pred EEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCCceeEEEEE
Q 008590 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (560)
Q Consensus 129 ~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~v 208 (560)
...+.+.|..|+.-.-...++|.+++. .+.+.|..|.. .....|....++.||.+...+.. .+..++.|
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~-~a~~di~~~~~~~G~~v~~~~~~-~g~~~~~I 76 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCP-QSINNIPLDARNHGYTVLDIQQD-GPTIRYLI 76 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEEEEEec-CCeEEEEE
Confidence 367899999999999999999988762 23445555533 45778999999999998643322 23344443
No 67
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=74.30 E-value=7.8 Score=34.50 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=40.3
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeeccC--------------CeEEEEeCCCCCCHHHHHHHHHh
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALAT--------------SLGEVEYDPTVISKDDIANAIED 188 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~~--------------~~~~v~~d~~~~~~~~i~~~l~~ 188 (560)
++|=+-+|..+.+++||.++.+-++. +.+.|.|||..++.++|.+..-+
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 46888999999999999988875543 34889999999999999886654
No 68
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=74.21 E-value=1.7e+02 Score=34.79 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=71.5
Q ss_pred hHHHHHHHhcCCCCeeEEEEEec-----CCeEEEEECCCC---CCHHHHHHHHHhc-C-Cc-hhhh-hccCCCC-CCCCC
Q 008590 60 CSNSVEGALMGLKGVAKASVALL-----QNKADVVFDPDL---VKDEDIKNAIEDA-G-FE-AEIL-AESSTSG-PKPQG 126 (560)
Q Consensus 60 C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~---~~~~~i~~~i~~~-G-~~-~~~~-~~~~~~~-~~~~~ 126 (560)
-...+++.+++.++|..+..... .+...+...+.. .+.+++.+.+.+. . ++ +... ....... .....
T Consensus 578 ~~~~~~~~l~~~~~V~~v~~~~g~~~~~~~~~~v~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~~~~~~~g~~~ 657 (1025)
T PRK10614 578 KLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAVQDIRVGGRQS 657 (1025)
T ss_pred HHHHHHHHHhcCCCeEEEEEEecCCCCceeEEEEEecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCCcccCcCCCCC
Confidence 34445566777788887665432 233445544321 1345555544332 1 11 1110 0000000 00011
Q ss_pred eeEEEeecCCCCch---hhHHHHHHHhcCCCCeeEEEeeccC--CeEEEEeCCC-----CCCHHHHHHHHHhc
Q 008590 127 TIVGQYTIGGMTCA---ACVNSVEGILRGLPGVKRAVVALAT--SLGEVEYDPT-----VISKDDIANAIEDA 189 (560)
Q Consensus 127 ~~~~~~~i~gm~C~---~C~~~ie~~l~~~~gv~~~~v~~~~--~~~~v~~d~~-----~~~~~~i~~~l~~~ 189 (560)
...+.+++.|-+-. .-+..+++.|.+.||+.++..+... ..+.+..|+. .++..++.+.+...
T Consensus 658 ~~~i~i~l~G~d~~~L~~~a~~i~~~L~~~pgv~~v~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~ 730 (1025)
T PRK10614 658 NASYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNA 730 (1025)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 22466677765433 2467899999999999999887554 4777777764 36788898888864
No 69
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=73.79 E-value=5.4 Score=36.59 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=39.9
Q ss_pred hhHHHHHhhhccCCCeeEEEeecCCC-------------------eEEEEeCCCCCChhHHHHHHHhc
Q 008590 215 LDAHFLEGILSNFKGVRQFRFDKISG-------------------ELEVLFDPEALSSRSLVDGIAGR 263 (560)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~vn~~~~-------------------~~~v~ydp~~~~~~~l~~~i~~~ 263 (560)
.|-+-+|..+..++||.++.+-..++ .+.|.|||..++.++|++..-..
T Consensus 16 GCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~ 83 (186)
T PRK13014 16 GCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFST 83 (186)
T ss_pred CCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence 56677888899999999988766553 37899999999999999876654
No 70
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=73.26 E-value=6 Score=37.07 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=41.0
Q ss_pred hhHHHHHhhhccCCCeeEEEeecCC-------------------CeEEEEeCCCCCChhHHHHHHHhc
Q 008590 215 LDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGR 263 (560)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~vn~~~-------------------~~~~v~ydp~~~~~~~l~~~i~~~ 263 (560)
.|-+-+|..+.+++||.++.+-... +.+.|.|||..++.++|++..-..
T Consensus 53 GCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~ 120 (213)
T PRK00058 53 GCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWEN 120 (213)
T ss_pred cCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHh
Confidence 5777888999999999999877663 447899999999999999877654
No 71
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=72.95 E-value=6.5 Score=36.83 Aligned_cols=49 Identities=31% Similarity=0.506 Sum_probs=41.2
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeecc-------------------CCeEEEEeCCCCCCHHHHHHHHHh
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALA-------------------TSLGEVEYDPTVISKDDIANAIED 188 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~-------------------~~~~~v~~d~~~~~~~~i~~~l~~ 188 (560)
++|=+-+|..+.+++||.++.+-++ .+.+.|.|||..++.++|.+..-+
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~ 119 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWE 119 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHH
Confidence 4688889999999999999988776 245899999999999999887644
No 72
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=72.72 E-value=23 Score=28.01 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=49.9
Q ss_pred eeEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEe-----eccCCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 008590 127 TIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV-----ALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (560)
Q Consensus 127 ~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v-----~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~ 194 (560)
.+++.+.+-..+-.--.--+-..|.+++||..+++ |..+..+.++.....++.++|.+.|++.|-...
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IH 77 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIH 77 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeee
Confidence 45556665555533335567788899999988765 456777778877777999999999999997654
No 73
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=72.36 E-value=6.8 Score=35.19 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=40.0
Q ss_pred hhHHHHHhhhccCCCeeEEEeecCC-------------------CeEEEEeCCCCCChhHHHHHHHhc
Q 008590 215 LDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGR 263 (560)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~vn~~~-------------------~~~~v~ydp~~~~~~~l~~~i~~~ 263 (560)
.|-+-+|+...++|||.++.+-.++ +.+.|.|||..++.++|++..-..
T Consensus 14 GCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 14 GCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred cCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 5777789999999999988865544 456899999999999999886654
No 74
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=71.91 E-value=8.2 Score=34.12 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=39.0
Q ss_pred hhHHHHHhhhccCCCeeEEEeecC-------------------CCeEEEEeCCCCCChhHHHHHHHhc
Q 008590 215 LDAHFLEGILSNFKGVRQFRFDKI-------------------SGELEVLFDPEALSSRSLVDGIAGR 263 (560)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~vn~~-------------------~~~~~v~ydp~~~~~~~l~~~i~~~ 263 (560)
.|-+-+|.....++||.++.+-.. .+.+.|.|||..++.++|++..-..
T Consensus 8 GCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~ 75 (149)
T TIGR00401 8 GCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEI 75 (149)
T ss_pred CCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHh
Confidence 577778889999999988875443 3567899999999999999876553
No 75
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=71.51 E-value=9.6 Score=29.45 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=34.6
Q ss_pred cccchhhHHHHHhhhccCCCeeEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCC
Q 008590 210 GVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSN 265 (560)
Q Consensus 210 g~~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~ydp~~~~~~~l~~~i~~~g~ 265 (560)
|-.....|..++..|+..++|..+=+|.-.....|.||+.+++.+++++.++....
T Consensus 6 g~It~eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kp 61 (88)
T PF11491_consen 6 GNITPEEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKP 61 (88)
T ss_dssp -S-TTTTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT
T ss_pred CCCCHHHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcCh
Confidence 33456778889999999999999999999999999999999999999999998763
No 76
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=70.50 E-value=7.1 Score=35.82 Aligned_cols=49 Identities=24% Similarity=0.512 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeeccCC-------------------eEEEEeCCCCCCHHHHHHHHHh
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIED 188 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~l~~ 188 (560)
++|=+-+|..+.+++||.++.+-++.+ .+.|.|||..++.++|.+..-+
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~ 82 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFS 82 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 457788899999999999988866554 3889999999999999886654
No 77
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=69.08 E-value=2.6e+02 Score=33.50 Aligned_cols=141 Identities=14% Similarity=0.191 Sum_probs=77.5
Q ss_pred EEEEEeCCCCChh----hHHHHHHHhcCCCCeeEEEEEec-C--CeEEEEECCCCCC----HHHHHHHHHhc--CCchhh
Q 008590 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALL-Q--NKADVVFDPDLVK----DEDIKNAIEDA--GFEAEI 113 (560)
Q Consensus 47 ~~~~~i~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~~-~--~~~~v~~~~~~~~----~~~i~~~i~~~--G~~~~~ 113 (560)
.+...-+|.+-.- -...+|++++.++|+.++.-.-. . +...+.++.+. + ..++.+.+... .++..+
T Consensus 44 ~V~~~~pGas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~-d~~~a~~~v~~~l~~~~~~LP~~~ 122 (1044)
T TIGR00915 44 TVSASYPGASAQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGT-DPDIAQVQVQNKLQLATPLLPQEV 122 (1044)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcc
Confidence 3344445544322 23456778999999998876432 3 34455554432 2 24455555432 122111
Q ss_pred hhccCCCCCCCCCeeEEEeecCC----CCch----hhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCC-----CCHH
Q 008590 114 LAESSTSGPKPQGTIVGQYTIGG----MTCA----ACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKD 180 (560)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~i~g----m~C~----~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~-----~~~~ 180 (560)
..+.... ..........+.+.+ .+-. .=.+.++..|.+++||.++++.-..+.+.|..|+.. +++.
T Consensus 123 ~~~~~~~-~~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~ 201 (1044)
T TIGR00915 123 QRQGVRV-EKASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPA 201 (1044)
T ss_pred cCCCcEE-eCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHH
Confidence 0000000 000111122233322 1211 123569999999999999999877777899998754 6788
Q ss_pred HHHHHHHhc
Q 008590 181 DIANAIEDA 189 (560)
Q Consensus 181 ~i~~~l~~~ 189 (560)
++.+.|...
T Consensus 202 dV~~~i~~~ 210 (1044)
T TIGR00915 202 DVISAIQAQ 210 (1044)
T ss_pred HHHHHHHHh
Confidence 999999874
No 78
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=65.98 E-value=16 Score=32.57 Aligned_cols=50 Identities=34% Similarity=0.527 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeeccCC-------------------eEEEEeCCCCCCHHHHHHHHHhc
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIEDA 189 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~~~-------------------~~~v~~d~~~~~~~~i~~~l~~~ 189 (560)
++|=+-+|..+.+++||.+..+-++.+ .+.|.|||..++.++|.+..-+.
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRI 75 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHh
Confidence 468899999999999999988865543 67899999999999988876554
No 79
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=64.86 E-value=15 Score=32.75 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=40.0
Q ss_pred hhHHHHHhhhccCCCeeEEEeecCC-------------------CeEEEEeCCCCCChhHHHHHHHhcC
Q 008590 215 LDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGRS 264 (560)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~vn~~~-------------------~~~~v~ydp~~~~~~~l~~~i~~~g 264 (560)
.|-+.+|..+..++||.+..+-... +.+.|.|||..++.++|++..-...
T Consensus 8 GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~~ 76 (155)
T PF01625_consen 8 GCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRIH 76 (155)
T ss_dssp SSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHHS
T ss_pred CCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHhc
Confidence 5778889999999999998876544 4678999999999999998766543
No 80
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=64.21 E-value=11 Score=29.20 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 008590 143 VNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (560)
Q Consensus 143 ~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~ 194 (560)
+..++=.|.+.++|-.+-+|--.+...|.||+..++.+++.+.++..++.+.
T Consensus 13 A~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi 64 (88)
T PF11491_consen 13 AMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVI 64 (88)
T ss_dssp THHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS
T ss_pred HHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhhe
Confidence 5677888999999999999999999999999999999999999999887764
No 81
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=64.02 E-value=85 Score=37.39 Aligned_cols=119 Identities=13% Similarity=0.231 Sum_probs=75.7
Q ss_pred HHHHHHHhcCCCCeeEEEeec---cCCeEEEEeCCCCCCHH----HHHHHHHhc--CCc-------eeeeccCCceeEEE
Q 008590 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISKD----DIANAIEDA--GFE-------ASFVQSSGQDKILL 206 (560)
Q Consensus 143 ~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~d~~~~~~~----~i~~~l~~~--G~~-------~~~~~~~~~~~~~~ 206 (560)
...+|++|..++||++++-.- ....+.++|+.+. +.+ ++.+.++.+ .+. +......+..-..+
T Consensus 62 t~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v~~~~~~~~~~~~~~v~~~ 140 (1037)
T PRK10555 62 TQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTI 140 (1037)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCccccCCceEeCCCCCceEEE
Confidence 467999999999999987642 2345778887763 544 344444432 111 11111111112334
Q ss_pred EEec----ccc----hhhHHHHHhhhccCCCeeEEEeecCCCeEEEEeCCCC-----CChhHHHHHHHh
Q 008590 207 QVTG----VLC----ELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (560)
Q Consensus 207 ~v~g----~~c----~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~ydp~~-----~~~~~l~~~i~~ 262 (560)
.+.+ +.- ..-++.++..|...+||.++.++-....+.|+.||.+ ++..++...|+.
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~ 209 (1037)
T PRK10555 141 AFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIES 209 (1037)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 4422 221 1233678999999999999999876667889999874 777888888874
No 82
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=63.61 E-value=58 Score=24.08 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=39.1
Q ss_pred eecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 008590 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (560)
Q Consensus 132 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~ 197 (560)
+.+.|+.|+.-.-...+++ ++.. .+.+.|..|.. ...+.|...+++.||.....+
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~-~s~~~i~~~~~~~G~~~~~~~ 56 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNE-VAKENVSRFAESRGYEVSVEE 56 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcCh-hHHHHHHHHHHHcCCEEEEEe
Confidence 4678999999999999999 5432 22344444432 456789999999999996543
No 83
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.86 E-value=55 Score=25.91 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=53.4
Q ss_pred CceEEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEE-----EecCCeEEEEECCCCCCHHHHHHHHHhcCCchhhh
Q 008590 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASV-----ALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (560)
Q Consensus 44 ~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v-----~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 114 (560)
+.+++-+.+...+-..-.--+-+.+++++||..+++ +..+....++......+-+++.+.+++.|.....+
T Consensus 4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 345566666666666667777888999999988775 55666677777667788999999999999876543
No 84
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=62.84 E-value=62 Score=24.18 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=41.8
Q ss_pred eecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 008590 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (560)
Q Consensus 132 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~ 197 (560)
+...|..|+.-.-...++|.+++- .+.+.|..|.. ...++|....++.||+.....
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~-~s~~di~~~~~~~g~~~~~~~ 57 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDP-STTRDIPKFCTFLGHELLAQE 57 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCC-chHHHHHHHHHHcCCEEEEEE
Confidence 456789999999999999988752 23445555533 467899999999999986533
No 85
>PRK11018 hypothetical protein; Provisional
Probab=62.65 E-value=34 Score=26.44 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=43.9
Q ss_pred EEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 48 ~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
..+...|..||....+.++++++++ ......+..|++ .+...+.......||....
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~---------~G~~L~V~~d~~-~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLK---------KGEILEVVSDCP-QSINNIPLDARNHGYTVLD 64 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCC---------CCCEEEEEeCCc-cHHHHHHHHHHHcCCEEEE
Confidence 4688999999999999999999876 344555665554 3567888888999998743
No 86
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=62.58 E-value=3.3e+02 Score=32.49 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=78.4
Q ss_pred ceEEEEEeCCCCChhhH----HHHHHHhcCCCCeeEEEEEecCCeEE--EEECCCCCCH----HHHHHHHHhc--CCchh
Q 008590 45 MRRIQVGVTGMTCAACS----NSVEGALMGLKGVAKASVALLQNKAD--VVFDPDLVKD----EDIKNAIEDA--GFEAE 112 (560)
Q Consensus 45 ~~~~~~~i~gm~C~~C~----~~ie~~l~~~~gv~~~~v~~~~~~~~--v~~~~~~~~~----~~i~~~i~~~--G~~~~ 112 (560)
.-.+...-+|-+-.-.+ ..+|++++.++|+.+++-.-..+... +.++.+. +. .++.+.+.+. .++..
T Consensus 44 ~v~V~~~~pGas~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~~-d~~~a~~~v~~~v~~~~~~LP~~ 122 (1025)
T PRK10614 44 VIMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFDR-DINGAARDVQAAINAAQSLLPSG 122 (1025)
T ss_pred eEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCc
Confidence 33445555565544444 55688999999999987644444444 4454432 32 3455555432 12111
Q ss_pred h-hhccCCC-CCCCCCeeEEEeecCCCCch-h---hHHHHHHHhcCCCCeeEEEeecc-CCeEEEEeCCCC-----CCHH
Q 008590 113 I-LAESSTS-GPKPQGTIVGQYTIGGMTCA-A---CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKD 180 (560)
Q Consensus 113 ~-~~~~~~~-~~~~~~~~~~~~~i~gm~C~-~---C~~~ie~~l~~~~gv~~~~v~~~-~~~~~v~~d~~~-----~~~~ 180 (560)
. ..+.-.. .+.......+.+.-+++.-. - =.+.++..|.++|||.++.+.-. .+.+.|.+|+.. +++.
T Consensus 123 ~~~~p~~~~~~~~~~pv~~~~~~~~~~~~~~L~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~ 202 (1025)
T PRK10614 123 MPSRPTYRKANPSDAPIMILTLTSDTYSQGQLYDFASTQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLD 202 (1025)
T ss_pred cCCCCEEEecCCCccceeEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHH
Confidence 0 0000000 00011112222221222111 1 13579999999999999988643 357889988754 6788
Q ss_pred HHHHHHHhc
Q 008590 181 DIANAIEDA 189 (560)
Q Consensus 181 ~i~~~l~~~ 189 (560)
++.+.|...
T Consensus 203 dV~~al~~~ 211 (1025)
T PRK10614 203 DVRQAISNA 211 (1025)
T ss_pred HHHHHHHHh
Confidence 999999865
No 87
>PF15584 Imm44: Immunity protein 44
Probab=62.49 E-value=4.6 Score=31.93 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.0
Q ss_pred cCCEEEEcCCCccCcceEE
Q 008590 461 SGDTLKVLPGTKLPADGIV 479 (560)
Q Consensus 461 ~GDii~v~~g~~iP~Dg~v 479 (560)
+.+-.+|+.|++||||||=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 5667789999999999963
No 88
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=62.05 E-value=1e+02 Score=36.38 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCeeEEEeeccCCeEEEE--eCCCCCCHH----HHHHHHHhcC---------CceeeeccCCceeEEEE
Q 008590 143 VNSVEGILRGLPGVKRAVVALATSLGEVE--YDPTVISKD----DIANAIEDAG---------FEASFVQSSGQDKILLQ 207 (560)
Q Consensus 143 ~~~ie~~l~~~~gv~~~~v~~~~~~~~v~--~d~~~~~~~----~i~~~l~~~G---------~~~~~~~~~~~~~~~~~ 207 (560)
...+|++++.++|+..++-.-..+...|+ |+.+ .+++ ++.+.+.... ........++..-..+.
T Consensus 63 t~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~~i~~~a 141 (1009)
T COG0841 63 TQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSNPLLILA 141 (1009)
T ss_pred hHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCccCCCceEeccCCCceEEEEE
Q ss_pred EecccchhhH------HHHHhhhccCCCeeEEEeecC-CCeEEEEeCCCC-----CChhHHHHHHHh
Q 008590 208 VTGVLCELDA------HFLEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSSRSLVDGIAG 262 (560)
Q Consensus 208 v~g~~c~~c~------~~ie~~l~~~~gV~~~~vn~~-~~~~~v~ydp~~-----~~~~~l~~~i~~ 262 (560)
+..-...... ..+...|.+.+||.++++.-. ...+.|..||.+ ++..++...|+.
T Consensus 142 l~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~ 208 (1009)
T COG0841 142 LTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRA 208 (1009)
T ss_pred EEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHH
No 89
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=61.24 E-value=67 Score=24.04 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred eecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 008590 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (560)
Q Consensus 132 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~ 197 (560)
+...|..|+.-.-...++|++++. .+.+.|..|.. .....|....++.||++....
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~-~s~~ni~~~~~~~g~~v~~~~ 57 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKP---------GEILEVISDCP-QSINNIPIDARNHGYKVLAIE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCc-hHHHHHHHHHHHcCCEEEEEE
Confidence 456799999999999999998762 23445555543 467889999999999986433
No 90
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=60.34 E-value=3.6e+02 Score=32.24 Aligned_cols=128 Identities=14% Similarity=0.156 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCCCeeEEEEEe---cCCeEEEEECCCCCCH----HHHHHHHHhcC--CchhhhhccCCC-CCCCCCeeEE
Q 008590 61 SNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVKD----EDIKNAIEDAG--FEAEILAESSTS-GPKPQGTIVG 130 (560)
Q Consensus 61 ~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~G--~~~~~~~~~~~~-~~~~~~~~~~ 130 (560)
...+|++++.++|+.+++-.- ..+...+.++.+. +. .++.+.+.+.. ++..+..+.... .........+
T Consensus 62 t~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g~-d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~ 140 (1049)
T PRK15127 62 TQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGT-DADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVV 140 (1049)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEE
Confidence 356788899999999988643 2345666676542 33 35555555431 221110000000 0000112222
Q ss_pred Eeec-CC-CCc-hhh---HHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCC-----CCHHHHHHHHHhc
Q 008590 131 QYTI-GG-MTC-AAC---VNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV-----ISKDDIANAIEDA 189 (560)
Q Consensus 131 ~~~i-~g-m~C-~~C---~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~-----~~~~~i~~~l~~~ 189 (560)
.+.- ++ +.- .-+ .+.++..|.+++||.++++.-..+.+.|..||.. +++.++.+.|...
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~~ 210 (1049)
T PRK15127 141 GVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKAQ 210 (1049)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 2221 11 111 112 2568999999999999998766677899998854 6788999999865
No 91
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=59.16 E-value=19 Score=32.41 Aligned_cols=50 Identities=32% Similarity=0.519 Sum_probs=40.7
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeeccC-------------------CeEEEEeCCCCCCHHHHHHHHHhc
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALAT-------------------SLGEVEYDPTVISKDDIANAIEDA 189 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~~-------------------~~~~v~~d~~~~~~~~i~~~l~~~ 189 (560)
++|=+=+|+.+.++|||.++.+-.+. +.+.|.|||..++.++|.+..-+.
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 46888899999999999988775443 357899999999999999877554
No 92
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=58.80 E-value=3.8e+02 Score=32.01 Aligned_cols=142 Identities=13% Similarity=0.181 Sum_probs=78.5
Q ss_pred eEEEEEeCCCCChh----hHHHHHHHhcCCCCeeEEEEEecCCeEE--EEECCCCCCH----HHHHHHHHhcC--Cchhh
Q 008590 46 RRIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNKAD--VVFDPDLVKD----EDIKNAIEDAG--FEAEI 113 (560)
Q Consensus 46 ~~~~~~i~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~~~~~~~--v~~~~~~~~~----~~i~~~i~~~G--~~~~~ 113 (560)
-.+...-+|.+-.- -...+|++++.++|+.+++-.-..+... +.++.+. +. .++.+.+.+.- ++...
T Consensus 54 v~V~t~~pGas~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~-d~~~a~~ev~~~i~~~~~~LP~~~ 132 (1040)
T PRK10503 54 IQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTL-PLDVAEQEVQAAINAATNLLPSDL 132 (1040)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCCcc
Confidence 34445566665444 3456788999999999988754444444 4455432 33 44555554321 11100
Q ss_pred hhccCCC-CCCCCCeeEEEeecCC--CCch---h-hHHHHHHHhcCCCCeeEEEeecc-CCeEEEEeCCCC-----CCHH
Q 008590 114 LAESSTS-GPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKD 180 (560)
Q Consensus 114 ~~~~~~~-~~~~~~~~~~~~~i~g--m~C~---~-C~~~ie~~l~~~~gv~~~~v~~~-~~~~~v~~d~~~-----~~~~ 180 (560)
. ..+.. ...........+.+.+ ..-. . =.+.++..|+++|||.++.+.-. .+.+.|.+|+.+ +++.
T Consensus 133 ~-~~p~~~~~~~~~~pv~~~~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~ 211 (1040)
T PRK10503 133 P-NPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSE 211 (1040)
T ss_pred C-CCCEEEEeCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHH
Confidence 0 00000 0000011122233322 2111 1 12579999999999999888743 468899998754 6778
Q ss_pred HHHHHHHhc
Q 008590 181 DIANAIEDA 189 (560)
Q Consensus 181 ~i~~~l~~~ 189 (560)
++.+.|...
T Consensus 212 ~v~~ai~~~ 220 (1040)
T PRK10503 212 TVRTAITGA 220 (1040)
T ss_pred HHHHHHHHh
Confidence 899988864
No 93
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=58.66 E-value=75 Score=23.76 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=42.3
Q ss_pred eecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 008590 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (560)
Q Consensus 132 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~ 197 (560)
+.+.|+.|+.-.-...++|.+++. .+.+.|..|.. ....+|....+..||+.....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~-~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDP-GFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEEEE
Confidence 567899999999999999988762 23445555533 457899999999999986443
No 94
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=58.57 E-value=31 Score=25.89 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=41.8
Q ss_pred EEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 50 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
+...|+.||.-....++++++++ ......+..+++ .+...+.......||....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~---------~G~~l~V~~d~~-~a~~di~~~~~~~G~~~~~ 55 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQ---------DGEQLEVKASDP-GFARDAQAWCKSTGNTLIS 55 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCC---------CCCEEEEEECCc-cHHHHHHHHHHHcCCEEEE
Confidence 45679999999999999999876 334555665553 4678889899999998854
No 95
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=56.59 E-value=28 Score=30.73 Aligned_cols=49 Identities=29% Similarity=0.488 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeecc-------------------CCeEEEEeCCCCCCHHHHHHHHHh
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALA-------------------TSLGEVEYDPTVISKDDIANAIED 188 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~-------------------~~~~~v~~d~~~~~~~~i~~~l~~ 188 (560)
++|=+-+|..+.+++||.++.+-++ .+.+.|.|||.+++.++|.+..-+
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~ 74 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWE 74 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHH
Confidence 4688889999999999988776433 346789999999999999886544
No 96
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=55.81 E-value=21 Score=35.17 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=39.9
Q ss_pred hhHHHHHhhhccCCCeeEEEeecCC-------------------CeEEEEeCCCCCChhHHHHHHHhc
Q 008590 215 LDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGR 263 (560)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~vn~~~-------------------~~~~v~ydp~~~~~~~l~~~i~~~ 263 (560)
.|-+.+|..+..++||.++.+-.+. +.+.|.|||..++.++|++..-..
T Consensus 135 GCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~~ 202 (283)
T PRK05550 135 GCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFEI 202 (283)
T ss_pred CCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHhh
Confidence 5778889999999999998865544 447899999999999999876543
No 97
>PRK09579 multidrug efflux protein; Reviewed
Probab=55.00 E-value=4.3e+02 Score=31.50 Aligned_cols=137 Identities=10% Similarity=0.029 Sum_probs=72.3
Q ss_pred hhHHHHHHHhcCCCCeeEEEEEec-----CCeEEEEECCC---CCCHHHHHHHHHhc-C-Cc-hhhhhccCCCCCCCCCe
Q 008590 59 ACSNSVEGALMGLKGVAKASVALL-----QNKADVVFDPD---LVKDEDIKNAIEDA-G-FE-AEILAESSTSGPKPQGT 127 (560)
Q Consensus 59 ~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~---~~~~~~i~~~i~~~-G-~~-~~~~~~~~~~~~~~~~~ 127 (560)
.....+|+.+++.|++........ .+...+...+. ..+.+++.+.+.+. . ++ .+...-...........
T Consensus 575 ~~~~~ie~~l~~~p~v~~~~~~~G~~~~~~~~~~i~l~~~~~r~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~g~g~~ 654 (1017)
T PRK09579 575 AYTDEFTPIFKSFPEYYSSFQINGFNGVQSGIGGFLLKPWNERERTQMELLPLVQAKLEEIPGLQIFGFNLPSLPGTGEG 654 (1017)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeccCCCccceEEEEecchHhccCCHHHHHHHHHHHHhcCCCcEEEeecCCCCCCCCCC
Confidence 456788888888888776653221 12233433221 11334444443221 1 11 11000000000010111
Q ss_pred eEEEeecCCC-Cc---hhhHHHHHHHhcCCCCeeEEEeec--cCCeEEEEeCCCC-----CCHHHHHHHHHh--cCCcee
Q 008590 128 IVGQYTIGGM-TC---AACVNSVEGILRGLPGVKRAVVAL--ATSLGEVEYDPTV-----ISKDDIANAIED--AGFEAS 194 (560)
Q Consensus 128 ~~~~~~i~gm-~C---~~C~~~ie~~l~~~~gv~~~~v~~--~~~~~~v~~d~~~-----~~~~~i~~~l~~--~G~~~~ 194 (560)
..+.+++.|- +- ..=+..+++.|.+.+|+.+++.+. ....+.+..|+.. ++..++.+.+.. -|..+.
T Consensus 655 ~~v~i~i~gg~d~~~L~~~a~~l~~~l~~~~g~~~v~~~~~~~~~el~i~vd~~ka~~~Gls~~~i~~~l~~~~~G~~~~ 734 (1017)
T PRK09579 655 LPFQFVINTANDYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVSMQDLGGTLATLLGEGEIN 734 (1017)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHcCCCcEEeeccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHHhCCceee
Confidence 2366666542 21 135678999999999999988775 4556777776643 678889888886 354444
Q ss_pred e
Q 008590 195 F 195 (560)
Q Consensus 195 ~ 195 (560)
.
T Consensus 735 ~ 735 (1017)
T PRK09579 735 R 735 (1017)
T ss_pred E
Confidence 3
No 98
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=54.10 E-value=49 Score=26.57 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=47.4
Q ss_pred eeEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEe-----eccCCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 008590 127 TIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV-----ALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (560)
Q Consensus 127 ~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v-----~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~ 194 (560)
.++..+.+-..+-++ .-.+-+.|.+++||..+++ |-.+..+.+......++.++|.+.|++.|-...
T Consensus 4 irRlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IH 75 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIH 75 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEE
T ss_pred eeEEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEE
Confidence 345556655554443 4577889999999988765 456777778877777899999999999997654
No 99
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=53.57 E-value=24 Score=34.75 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=39.9
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeeccC-------------------CeEEEEeCCCCCCHHHHHHHHHh
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALAT-------------------SLGEVEYDPTVISKDDIANAIED 188 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~~-------------------~~~~v~~d~~~~~~~~i~~~l~~ 188 (560)
++|=+-+|..+.+++||.++.+-++. +.+.|.|||..++.++|.+..-+
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~ 201 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFE 201 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHh
Confidence 46888999999999999988875543 34889999999999998876543
No 100
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=52.54 E-value=53 Score=24.57 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=41.4
Q ss_pred EEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 50 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
+...|..||.-.-..++++++++ ......+..+++ .+...+.......||....
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~---------~G~~l~V~~dd~-~s~~di~~~~~~~g~~~~~ 55 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMK---------PGDTLLVLATDP-STTRDIPKFCTFLGHELLA 55 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCC---------CCCEEEEEeCCC-chHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999875 334556666554 3678899999999998754
No 101
>PRK09577 multidrug efflux protein; Reviewed
Probab=52.45 E-value=1.9e+02 Score=34.57 Aligned_cols=120 Identities=13% Similarity=0.241 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCCeeEEEeecc--CCeEEEEeCCCCCCHH----HHHHHHHhc--CCc-------eeeeccCCceeEEEE
Q 008590 143 VNSVEGILRGLPGVKRAVVALA--TSLGEVEYDPTVISKD----DIANAIEDA--GFE-------ASFVQSSGQDKILLQ 207 (560)
Q Consensus 143 ~~~ie~~l~~~~gv~~~~v~~~--~~~~~v~~d~~~~~~~----~i~~~l~~~--G~~-------~~~~~~~~~~~~~~~ 207 (560)
...+|+.|..++|+++++..-. ...+.++|+.+. +.+ ++.+.+++. .+. +......+.....+.
T Consensus 62 t~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~ 140 (1032)
T PRK09577 62 TALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGV-NADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVS 140 (1032)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCCceEEEE
Confidence 4578999999999997655433 445666677653 443 344444432 111 111111111122344
Q ss_pred Eecc---cc----hh-hHHHHHhhhccCCCeeEEEeecCCCeEEEEeCCCC-----CChhHHHHHHHhc
Q 008590 208 VTGV---LC----EL-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAGR 263 (560)
Q Consensus 208 v~g~---~c----~~-c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~ydp~~-----~~~~~l~~~i~~~ 263 (560)
+.+- .. .. -.+.++..|.+.|||.++.++-....+.|..||.+ ++..++.+.++..
T Consensus 141 l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~~ 209 (1032)
T PRK09577 141 LTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAH 209 (1032)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 4332 11 11 23679999999999999999886666778788874 6778888888763
No 102
>PHA02669 hypothetical protein; Provisional
Probab=52.18 E-value=33 Score=30.17 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHhc
Q 008590 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAK-GKTSDAIKKLVEL 432 (560)
Q Consensus 365 md~Li~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~~~~l~~~ 432 (560)
|..|+.|+++.+.+| -+++.|.+++-+|-..|...+ .+..+.|++|...
T Consensus 1 m~~LVii~iIvavi~-------------------LTgAaiYlLiEiGLAaERanKrsRvK~nMRkLatQ 50 (210)
T PHA02669 1 MMALVLIGIIVAVIY-------------------LTGAAIYLLIEIGLAAERANKRSRVKANMRKLATQ 50 (210)
T ss_pred CceeehhHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 556777777766544 246666677777777765544 3345667777543
No 103
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=52.14 E-value=93 Score=22.89 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=41.8
Q ss_pred eecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 008590 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (560)
Q Consensus 132 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~ 197 (560)
+...|+.|+.-.-.+.++|.+++. .+.+.|..|.. ....+|...++..||......
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~-~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDP-GAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCC-cHHHHHHHHHHHcCCEEEEEE
Confidence 456789999989999999988652 34455565543 368899999999999975433
No 104
>COG4325 Predicted membrane protein [Function unknown]
Probab=51.81 E-value=2.4e+02 Score=29.00 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=7.8
Q ss_pred EEEcCCCccCcceEEE
Q 008590 465 LKVLPGTKLPADGIVV 480 (560)
Q Consensus 465 i~v~~g~~iP~Dg~v~ 480 (560)
+.+++||.|-.|+.+.
T Consensus 261 l~~r~Gdfvv~g~~L~ 276 (464)
T COG4325 261 LVTRVGDFVVAGGLLG 276 (464)
T ss_pred EEecCcceecCCCcEE
Confidence 3444555555555444
No 105
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=51.40 E-value=46 Score=24.92 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=41.0
Q ss_pred EeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 51 GVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 51 ~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
...|..||.-....++++++++ ......+..|++ .+...+.......||....
T Consensus 3 D~rG~~CP~Pvi~~kkal~~l~---------~G~~l~V~~d~~-~s~~ni~~~~~~~g~~v~~ 55 (69)
T cd03422 3 DLRGEPCPYPAIATLEALPSLK---------PGEILEVISDCP-QSINNIPIDARNHGYKVLA 55 (69)
T ss_pred ccCCCcCCHHHHHHHHHHHcCC---------CCCEEEEEecCc-hHHHHHHHHHHHcCCEEEE
Confidence 4678999999999999999876 334455565553 4678888889999998853
No 106
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=51.13 E-value=1.6e+02 Score=35.18 Aligned_cols=119 Identities=13% Similarity=0.195 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCCCeeEEEeec---cCCeEEEEeCCCCCCHH----HHHHHHHhcC--Ccee-------eeccCCceeEEE
Q 008590 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISKD----DIANAIEDAG--FEAS-------FVQSSGQDKILL 206 (560)
Q Consensus 143 ~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~d~~~~~~~----~i~~~l~~~G--~~~~-------~~~~~~~~~~~~ 206 (560)
...+|++|..++|+++++-.- ....+.++|+.+ .+++ ++.+.+.... +... ........-..+
T Consensus 62 t~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g-~d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~ 140 (1049)
T PRK15127 62 TQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESG-TDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVV 140 (1049)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEE
Confidence 467999999999999987643 244677888776 3554 4555555431 2211 111111111234
Q ss_pred EEec----ccc----hhhHHHHHhhhccCCCeeEEEeecCCCeEEEEeCCCC-----CChhHHHHHHHh
Q 008590 207 QVTG----VLC----ELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (560)
Q Consensus 207 ~v~g----~~c----~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~ydp~~-----~~~~~l~~~i~~ 262 (560)
.+.+ +.- ..-.+.++..|.+.|||.++.+.-....+.|..||.+ ++..++...++.
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~ 209 (1049)
T PRK15127 141 GVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKA 209 (1049)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 4432 111 1122568899999999999999877667889999884 677888888873
No 107
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=49.93 E-value=2.8e+02 Score=27.70 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=28.9
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCc
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~ 192 (560)
..|.+.+++.+.+.|||.+++.- ...+...+.-+..|+.
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~--------------sre~~l~~L~~~lg~~ 109 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI--------------SREEALKELQPWLGFG 109 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe--------------CHHHHHHHHHHHcCch
Confidence 88999999999999999987652 1234455555568876
No 108
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=48.91 E-value=83 Score=24.36 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=41.3
Q ss_pred EEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcC-Cch
Q 008590 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG-FEA 111 (560)
Q Consensus 47 ~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G-~~~ 111 (560)
...+.+.|+.|+.-...+.+++++++ ......|..+++. +...+.......| |..
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~---------~Ge~LeV~~ddp~-~~~dIp~~~~~~~~~~l 60 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLK---------PGEILEVIADDPA-AKEDIPAWAKKEGGHEL 60 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCC---------CCCEEEEEecCcc-hHHHHHHHHHHcCCcEE
Confidence 35789999999999999999999987 4556666666543 4577777777555 554
No 109
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=48.75 E-value=85 Score=24.40 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=42.6
Q ss_pred EEEEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchh
Q 008590 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (560)
Q Consensus 48 ~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 112 (560)
.++...|+.||.-....++++++++ ......+..+++ .....+.......|++..
T Consensus 10 ~~lD~~Gl~CP~Pll~~kk~l~~l~---------~G~~l~V~~dd~-~~~~di~~~~~~~G~~~~ 64 (81)
T PRK00299 10 HTLDALGLRCPEPVMMVRKTVRNMQ---------PGETLLIIADDP-ATTRDIPSFCRFMDHELL 64 (81)
T ss_pred eEEecCCCCCCHHHHHHHHHHHcCC---------CCCEEEEEeCCc-cHHHHHHHHHHHcCCEEE
Confidence 4688999999999999999999876 334455555543 356788888889999874
No 110
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=48.11 E-value=5.6e+02 Score=30.69 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=72.4
Q ss_pred hhHHHHHHHhcCCCCeeEEEEEec---------CCeEEEEECCC---CCCHHHHHHHHHhc-C-Cc-hhhh-hc-cCCCC
Q 008590 59 ACSNSVEGALMGLKGVAKASVALL---------QNKADVVFDPD---LVKDEDIKNAIEDA-G-FE-AEIL-AE-SSTSG 121 (560)
Q Consensus 59 ~C~~~ie~~l~~~~gv~~~~v~~~---------~~~~~v~~~~~---~~~~~~i~~~i~~~-G-~~-~~~~-~~-~~~~~ 121 (560)
.....+|+.+.+.|+|..+..... .+...+...+. ..+..++.+.+.+. . ++ +... .+ .....
T Consensus 587 ~~~~~ve~~l~~~~~v~~~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~v~~~lr~~l~~~p~~~~~~~~~~~~~~ 666 (1040)
T PRK10503 587 QRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVAKVPGVDLYLQPTQDLTI 666 (1040)
T ss_pred HHHHHHHHHHhhCCCeEEEEEEeccCCCCCCCceEEEEEEecchhhccCCHHHHHHHHHHHHhcCCCcEEeccCCccccc
Confidence 467888888888888887765432 12334444321 12334555444322 1 11 1110 00 00000
Q ss_pred CCCCCeeEEEeecCCCCch---hhHHHHHHHhcCCCCeeEEEeecc--CCeEEEEeCCCC-----CCHHHHHHHHHhc
Q 008590 122 PKPQGTIVGQYTIGGMTCA---ACVNSVEGILRGLPGVKRAVVALA--TSLGEVEYDPTV-----ISKDDIANAIEDA 189 (560)
Q Consensus 122 ~~~~~~~~~~~~i~gm~C~---~C~~~ie~~l~~~~gv~~~~v~~~--~~~~~v~~d~~~-----~~~~~i~~~l~~~ 189 (560)
........+.+++.|-+-. .=+..+++.|.+.||+.++..+.. ...+.++.|+.. ++..++.+.+...
T Consensus 667 ~~~~~~~~v~i~l~G~d~~~L~~~a~~l~~~l~~~pgv~~v~~~~~~~~~e~~v~id~~k~~~~Gls~~~v~~~l~~~ 744 (1040)
T PRK10503 667 DTQVSRTQYQFTLQATSLDALSTWVPKLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNALYNA 744 (1040)
T ss_pred cCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEEEccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 0001112456777774422 234678999999999999986544 457778877643 6788888888863
No 111
>PRK09579 multidrug efflux protein; Reviewed
Probab=48.06 E-value=5.5e+02 Score=30.63 Aligned_cols=127 Identities=12% Similarity=0.124 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCCCeeEEEEEecCCeEEE--EECCCCCCH----HHHHHHHHhc--CCchhhhhccCCCCCCCCCeeEEEe
Q 008590 61 SNSVEGALMGLKGVAKASVALLQNKADV--VFDPDLVKD----EDIKNAIEDA--GFEAEILAESSTSGPKPQGTIVGQY 132 (560)
Q Consensus 61 ~~~ie~~l~~~~gv~~~~v~~~~~~~~v--~~~~~~~~~----~~i~~~i~~~--G~~~~~~~~~~~~~~~~~~~~~~~~ 132 (560)
...+|++++.++|+.+++-.-..+...+ .++.+. +. .++.+.+.+. .++...-.|.-....... .....+
T Consensus 64 t~plE~~L~~v~gi~~i~S~S~~G~s~I~v~f~~g~-d~~~a~~~v~~~v~~v~~~LP~~~~~P~i~~~~~~~-~~v~~~ 141 (1017)
T PRK09579 64 TQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGA-DSDRLFTELLAKANEVKNQLPQDAEDPVLSKEAADA-SALMYI 141 (1017)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCCCCCCeEEeCCCCC-cceEEE
Confidence 4567888999999999887655555555 455432 33 3444454432 111111000000000000 111222
Q ss_pred ecCC--CCch---h-hHHHHHHHhcCCCCeeEEEeec-cCCeEEEEeCCCC-----CCHHHHHHHHHhc
Q 008590 133 TIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVAL-ATSLGEVEYDPTV-----ISKDDIANAIEDA 189 (560)
Q Consensus 133 ~i~g--m~C~---~-C~~~ie~~l~~~~gv~~~~v~~-~~~~~~v~~d~~~-----~~~~~i~~~l~~~ 189 (560)
.+.+ .+-. . =.+.++..|.+++||.++++.- ....+.|..||.+ ++..++.+.|+..
T Consensus 142 ~~~~~~~~~~~L~~~~~~~i~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~~al~~~ 210 (1017)
T PRK09579 142 SFYSEEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQAVRRY 210 (1017)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHhhcCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 3322 2211 1 2356899999999999988753 3346778888643 6888999999875
No 112
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=47.40 E-value=50 Score=24.41 Aligned_cols=52 Identities=23% Similarity=0.465 Sum_probs=37.8
Q ss_pred EEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchh
Q 008590 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (560)
Q Consensus 50 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 112 (560)
+...|+.||.......+++ ++.. .....+..+++ .+...+.......||...
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~-~s~~~i~~~~~~~G~~~~ 53 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNE-VAKENVSRFAESRGYEVS 53 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcCh-hHHHHHHHHHHHcCCEEE
Confidence 4567999999999999999 5542 23444444443 356788888899999884
No 113
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=47.31 E-value=3.3e+02 Score=29.06 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=16.9
Q ss_pred HHHHHhcCCceEEEEEecCCCc
Q 008590 426 IKKLVELAPATALLVVKDKVGK 447 (560)
Q Consensus 426 ~~~l~~~~~~~~~v~~~~~~g~ 447 (560)
+-++..++|.-...++++.||.
T Consensus 221 LLElR~lqp~f~vkVVRSpDGe 242 (505)
T PF06638_consen 221 LLELRHLQPQFYVKVVRSPDGE 242 (505)
T ss_pred HHHHHhcCceEEEEEEECCCCc
Confidence 4456678888888888989993
No 114
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=47.23 E-value=40 Score=30.24 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=40.3
Q ss_pred hhHHHHHhhhccCCCeeEEEeecCC-------------------CeEEEEeCCCCCChhHHHHHHHhcC
Q 008590 215 LDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGRS 264 (560)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~vn~~~-------------------~~~~v~ydp~~~~~~~l~~~i~~~g 264 (560)
.|-+.+|.+...++||..-+|-.+. +.+.|.|||+.++-++|++..-...
T Consensus 32 GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~~H 100 (191)
T KOG1635|consen 32 GCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWSRH 100 (191)
T ss_pred cchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHHcC
Confidence 5778889999999999877655433 5678999999999999999877643
No 115
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=46.27 E-value=40 Score=31.98 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=63.2
Q ss_pred CCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCCceeEEEEEeccc----------chhhHHHHHh
Q 008590 153 LPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQVTGVL----------CELDAHFLEG 222 (560)
Q Consensus 153 ~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~v~g~~----------c~~c~~~ie~ 222 (560)
..||.--.....++...+..++. +...-++.|...||.-+...+ -..-|.-.|+- ...-.+.+++
T Consensus 42 ~~gI~A~K~~~~~g~~~l~Ve~~--~fa~Av~iL~~~GlPr~~f~~---l~d~Fp~dgLVsSP~eEkaR~~~~~eQ~le~ 116 (246)
T COG4669 42 SHGINAEKKADKDGGTSLLVEES--DFAEAVEILNQNGLPRKKFTT---LGDIFPKDGLVSSPTEEKARLNYAKEQQLEQ 116 (246)
T ss_pred HcCCcceeeccCCCceEEEEcHH--HHHHHHHHHHhcCCCCCCCCc---HHHhCCcccccCCcHHHHHHHHHHHHHHHHH
Confidence 46776666666677777775543 334455666678886542110 00012222222 1233478999
Q ss_pred hhccCCCeeEEEeecC--------------CCeEEEEeCCCC---CChhHHHHHHHhcC
Q 008590 223 ILSNFKGVRQFRFDKI--------------SGELEVLFDPEA---LSSRSLVDGIAGRS 264 (560)
Q Consensus 223 ~l~~~~gV~~~~vn~~--------------~~~~~v~ydp~~---~~~~~l~~~i~~~g 264 (560)
.|+.++||.+++|+.. +.++.++|.|.. +...+|...++...
T Consensus 117 tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~~~v~~IK~LV~nSv 175 (246)
T COG4669 117 TLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQIKRLVANSV 175 (246)
T ss_pred HHHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCCCChhHhHHHHHHHHHhcc
Confidence 9999999987665433 467789998774 34455666666543
No 116
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=44.08 E-value=77 Score=23.34 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=41.1
Q ss_pred EEeCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 50 ~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
+...|+.||.-...+.+++++++ ......+..+++ .+...+...+...||....
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~---------~g~~l~v~~d~~-~~~~~i~~~~~~~g~~~~~ 55 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLK---------SGEVLEVLLDDP-GAVEDIPAWAKETGHEVLE 55 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCC---------CCCEEEEEecCC-cHHHHHHHHHHHcCCEEEE
Confidence 45678999999999999999875 344555565554 3678889889999998643
No 117
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=42.80 E-value=6.5e+02 Score=29.98 Aligned_cols=132 Identities=18% Similarity=0.192 Sum_probs=78.6
Q ss_pred hhhHHHHHHHhcCCCCeeEEEEEec-----------CCeEEEEECCC------CCCHHHHHHHHHhcCCc-----hhhhh
Q 008590 58 AACSNSVEGALMGLKGVAKASVALL-----------QNKADVVFDPD------LVKDEDIKNAIEDAGFE-----AEILA 115 (560)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~-----------~~~~~v~~~~~------~~~~~~i~~~i~~~G~~-----~~~~~ 115 (560)
..-...+|+.+++.++|.++..... .+...+.+.+. ..+..++.+.+.+.=-+ .....
T Consensus 577 ~~~~~~ve~~L~~~p~V~~v~s~vG~~~~~~~~~~~~~~~~i~L~~~~~r~~~~~~~~~l~~~lr~~l~~~~~~~~~~~~ 656 (1021)
T PF00873_consen 577 DAIVKQVEDILKEDPEVKSVSSRVGRGFSGFNAGPNSASIFINLKPKSERPGSKESIDELIDELRQKLKQLPGARVFVFS 656 (1021)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEEEESECSST--ECTTEEEEEEEE--CTCS-SCCCSHHHHHHHHHHHCCTSTSSEEEEEE
T ss_pred HHHHHHHHHHHHhhhhhhccceEeccccccccCCCcceEEEEEEeecccccccchhHHHHHHHHHHhhhhCCCcceeccc
Confidence 3578889999999999998887542 12334444332 12456666666443111 11111
Q ss_pred ccCCC--CCCCCCeeEEEeecCCCCchh---hHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCC-------CCCHHHHH
Q 008590 116 ESSTS--GPKPQGTIVGQYTIGGMTCAA---CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPT-------VISKDDIA 183 (560)
Q Consensus 116 ~~~~~--~~~~~~~~~~~~~i~gm~C~~---C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~-------~~~~~~i~ 183 (560)
..... ....+....+.+.+.|-+-.. =++.+++.+.+.||+.++..+.....-++..+++ .++.+++.
T Consensus 657 ~~~~~~~~~~~g~~~~i~v~i~G~d~~~L~~~a~~v~~~l~~~pgv~dv~~~~~~~~~el~i~~dreka~~~Gls~~~va 736 (1021)
T PF00873_consen 657 PPDLRGLGSGPGSSAPIQVEIYGDDLEELRKAAEKVKAKLAEIPGVTDVRDDWEDGQPELRIDPDREKAARLGLSPADVA 736 (1021)
T ss_dssp HCSSCCCCSSSSEEEEEEEECSSSCHHHHHHHHHHHHHHHHHSTTEEEEEESSSSBEEEEEEEE-HHHHHHTTB-HHHHH
T ss_pred cccccccccccccceeeeeccCCCCHHHHHHHHHHHHHHHHhCCCcccccccccccCcceEEEecHHHHHHcCCCHHHHH
Confidence 11110 112233456677778865443 5678999999999999999988877666555432 26777888
Q ss_pred HHHHhc
Q 008590 184 NAIEDA 189 (560)
Q Consensus 184 ~~l~~~ 189 (560)
+.+...
T Consensus 737 ~~l~~a 742 (1021)
T PF00873_consen 737 RTLRTA 742 (1021)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 118
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=41.78 E-value=6.9e+02 Score=29.95 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=45.2
Q ss_pred EEEeecCCCCch---hhHHHHHHHhcCCCCeeEEEeecc--CCeEEEEeCCCC-----CCHHHHHHHHHhc
Q 008590 129 VGQYTIGGMTCA---ACVNSVEGILRGLPGVKRAVVALA--TSLGEVEYDPTV-----ISKDDIANAIEDA 189 (560)
Q Consensus 129 ~~~~~i~gm~C~---~C~~~ie~~l~~~~gv~~~~v~~~--~~~~~v~~d~~~-----~~~~~i~~~l~~~ 189 (560)
.+.+.+.|-+-. .=+..+++.|.++||+.+++.+.. ...+.+..|+.. +++.++.+.+...
T Consensus 683 ~i~i~l~G~d~~~L~~~a~~v~~~l~~~pgv~~v~~~~~~~~~e~~i~id~~~~~~~Glt~~~v~~~l~~~ 753 (1051)
T TIGR00914 683 DVAVKVFGDDLDDLDATAEKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQDTVATA 753 (1051)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHhcCCCceeeeccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 467777774432 246779999999999999988754 456778877643 6788898888854
No 119
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=41.16 E-value=55 Score=24.62 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=15.2
Q ss_pred eeEEee---CCCcCcCCEEEEcCCC
Q 008590 450 EEREID---ALLIQSGDTLKVLPGT 471 (560)
Q Consensus 450 ~~~~v~---~~~l~~GDii~v~~g~ 471 (560)
..+++. +.++++||.|+++.|.
T Consensus 26 ~~~~V~~~lv~~v~~Gd~VLVHaG~ 50 (68)
T PF01455_consen 26 VRREVSLALVPDVKVGDYVLVHAGF 50 (68)
T ss_dssp EEEEEEGTTCTSB-TT-EEEEETTE
T ss_pred cEEEEEEEEeCCCCCCCEEEEecCh
Confidence 556665 5568899999999984
No 120
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=39.52 E-value=81 Score=29.06 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=32.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHhcCCCcceEEecCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008590 241 ELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFARMTSRDSEETSNMFRLFISSLFLSIPVFFIRVICPH 313 (560)
Q Consensus 241 ~~~v~ydp~~~~~~~l~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~l~~ 313 (560)
.+.|.|-+..++.+.+...++... .+.....++.....++++|++++.+..|.
T Consensus 104 ~i~v~yP~~~~~~~~v~~~L~~l~--------------------~~~~~~H~k~~~~~~~~~PlT~P~~LiPv 156 (187)
T PF10173_consen 104 PIEVYYPGSVISPREVLRQLRKLA--------------------TERQPYHRKRMIWCILGIPLTLPFALIPV 156 (187)
T ss_pred ceeEecCcccCCHHHHHHHHHHHH--------------------HHhHHHHHHHHHHHHHhhhhhcceeeecC
Confidence 677777657788888877777643 11122233334456677888777655554
No 121
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.75 E-value=64 Score=25.56 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhcCCceeeeccCCceeEEEEEecccchhhHHHHHhhhccCCCeeEEEeecCCCeEEEEe
Q 008590 177 ISKDDIANAIEDAGFEASFVQSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLF 246 (560)
Q Consensus 177 ~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~v~g~~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~y 246 (560)
.+++.|.+.|+++||+++... + + .....||+..+.+++.+..+.|.-
T Consensus 12 ~~~dri~~~l~e~g~~v~~eG--D--~-------------------ivas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEEG--D--R-------------------IVASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred CCHHHHHHHHHHhCeeEeecc--c--E-------------------EEEecCCceEEEEecccceEEEec
Confidence 468899999999999887521 1 1 235678999999999999998874
No 122
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=37.52 E-value=1.9e+02 Score=22.27 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=48.3
Q ss_pred EEEECCCCCCHHHHHHHHHhcCCchhhhhccCCCCCCCCCeeEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEe
Q 008590 87 DVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (560)
Q Consensus 87 ~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v 161 (560)
.+..++..-..+.+...+.+.||.++.+.-... ..++..+.++.++ .......+.+.|.++..|.++++
T Consensus 7 si~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t---~~~~~sriti~v~---~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 7 TIKARFRPEVLERVLRVVRHRGFQVCSMNMTQN---TDAQNINIELTVA---SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEECCccHHHHHHHHHhcCCeeeeeEEeeec---CCCCEEEEEEEEC---CCchHHHHHHHHhcCcCeEEEEE
Confidence 333333333568888888999999876554321 2344566777774 47788999999999999988775
No 123
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=37.25 E-value=2e+02 Score=22.76 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHH
Q 008590 143 VNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIE 187 (560)
Q Consensus 143 ~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~ 187 (560)
...+.+.|..+||+.-...+...+++.|..+.. +.+.+.+.+.
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~--~~~~~~~~i~ 61 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAE--DSETLLQTIE 61 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeC--ChHHHHHHHH
Confidence 567777888888876555555567777776543 3444554443
No 124
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=36.72 E-value=68 Score=30.52 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=45.8
Q ss_pred CCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhhh-------hccCCCCCCCCCeeEEEeecCCCCchhhHH
Q 008590 72 KGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL-------AESSTSGPKPQGTIVGQYTIGGMTCAACVN 144 (560)
Q Consensus 72 ~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~-------~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~ 144 (560)
.||.-.+..-..+...+..++. +..+-.+.+...||+-+.. +.+...+++..+..++.+-+ ++
T Consensus 43 ~gI~A~K~~~~~g~~~l~Ve~~--~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR~~~~~--------eQ 112 (246)
T COG4669 43 HGINAEKKADKDGGTSLLVEES--DFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARLNYAK--------EQ 112 (246)
T ss_pred cCCcceeeccCCCceEEEEcHH--HHHHHHHHHHhcCCCCCCCCcHHHhCCcccccCCcHHHHHHHHHHH--------HH
Confidence 4555555555566666654432 3344555667889875332 22222222333333333333 57
Q ss_pred HHHHHhcCCCCeeEEEee
Q 008590 145 SVEGILRGLPGVKRAVVA 162 (560)
Q Consensus 145 ~ie~~l~~~~gv~~~~v~ 162 (560)
.+++.|++++||-+++|.
T Consensus 113 ~le~tLs~mDGVi~ArV~ 130 (246)
T COG4669 113 QLEQTLSKMDGVISARVH 130 (246)
T ss_pred HHHHHHHhcCceEEEEEE
Confidence 999999999999876664
No 125
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=36.04 E-value=2e+02 Score=22.17 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=43.8
Q ss_pred EEEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcC-Cceeeec
Q 008590 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG-FEASFVQ 197 (560)
Q Consensus 129 ~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G-~~~~~~~ 197 (560)
...+.+.|+.|+.-.-.+.++|.+++ ..+.+.|..|.. ...++|....+..| |.....+
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~m~---------~Ge~LeV~~ddp-~~~~dIp~~~~~~~~~~ll~~e 64 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAKLK---------PGEILEVIADDP-AAKEDIPAWAKKEGGHELLEVE 64 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHcCC---------CCCEEEEEecCc-chHHHHHHHHHHcCCcEEEEEE
Confidence 45789999999999999999999887 345566666544 34588988888555 7765433
No 126
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=35.64 E-value=1.9e+02 Score=22.67 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=14.1
Q ss_pred HHHhccHHHHHHHHHhcCCceEEEEE
Q 008590 416 ILAKGKTSDAIKKLVELAPATALLVV 441 (560)
Q Consensus 416 ~~~~~~~~~~~~~l~~~~~~~~~v~~ 441 (560)
.+..+|..+..+++.+.....-.|++
T Consensus 21 ~rpqkK~~k~~~~m~~~L~~Gd~VvT 46 (84)
T TIGR00739 21 IRPQRKRRKAHKKLIESLKKGDKVLT 46 (84)
T ss_pred echHHHHHHHHHHHHHhCCCCCEEEE
Confidence 34555555555565554445555554
No 127
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=33.58 E-value=2.3e+02 Score=21.98 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=47.0
Q ss_pred EEeecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCCceeEEEEE
Q 008590 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQV 208 (560)
Q Consensus 130 ~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~v 208 (560)
..+...|..|+.-.-...++|.+++. .+.+.|..|.. ...++|....+..|++....+. +.+..++.|
T Consensus 10 ~~lD~~Gl~CP~Pll~~kk~l~~l~~---------G~~l~V~~dd~-~~~~di~~~~~~~G~~~~~~~~-~~g~~~~~I 77 (81)
T PRK00299 10 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDP-ATTRDIPSFCRFMDHELLAQET-EQLPYRYLI 77 (81)
T ss_pred eEEecCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEEEEEe-cCCEEEEEE
Confidence 56889999999999999999998762 22344444432 3578899999999999864332 233444443
No 128
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=33.41 E-value=68 Score=34.69 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=40.4
Q ss_pred hhhHHHHHhhhccCCCeeEEEeecCC------------------CeEEEEeCCCCCChhHHHHHHHhc
Q 008590 214 ELDAHFLEGILSNFKGVRQFRFDKIS------------------GELEVLFDPEALSSRSLVDGIAGR 263 (560)
Q Consensus 214 ~~c~~~ie~~l~~~~gV~~~~vn~~~------------------~~~~v~ydp~~~~~~~l~~~i~~~ 263 (560)
..|-+-+|..+.+++||.++.+-.++ +.+.|.|||..++.++|++..-..
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~~~ 272 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYFRV 272 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHHHh
Confidence 36778889999999999998865544 347899999999999999876654
No 129
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.37 E-value=2e+02 Score=21.29 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=39.5
Q ss_pred CHHHHHHHHHhcCCchhhhhccCCCCCCCCCeeEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEe
Q 008590 96 KDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (560)
Q Consensus 96 ~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v 161 (560)
...++.+.+.+.|-.+..+.... ...+...+.+.++--.=......+-++|++++||.++.+
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~----~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNI----PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCC----CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 46788888888887765543321 112233444555432222367889999999999998764
No 130
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=33.02 E-value=1.4e+02 Score=24.03 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=45.0
Q ss_pred eEEEEEeCCCCChhhHHHHHHHhcCCCCeeEEEE-----EecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASV-----ALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 46 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v-----~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
+++.+.+-.. -..-.-.+-+.+.+++||..+++ +..+.+..++......+.+++.+++++.|-.+..
T Consensus 5 rRlVLDVlKP-~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHS 76 (95)
T PF02680_consen 5 RRLVLDVLKP-HEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHS 76 (95)
T ss_dssp EEEEEEEEEE-SSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEE
T ss_pred eEEEEEeecC-CCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEe
Confidence 4444444444 34455567788999999998875 4555666666666668899999999999976644
No 131
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.89 E-value=2e+02 Score=21.24 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=38.5
Q ss_pred CHHHHHHHHHhcCCceeeeccC----CceeEEEEEecccchhhHHHHHhhhccCCCeeEEEe
Q 008590 178 SKDDIANAIEDAGFEASFVQSS----GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRF 235 (560)
Q Consensus 178 ~~~~i~~~l~~~G~~~~~~~~~----~~~~~~~~v~g~~c~~c~~~ie~~l~~~~gV~~~~v 235 (560)
-..+|.+.|.+.|-........ ...+..|.+.--.-...-..+-+.|+++|||.++.+
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 4678999999998877554321 223345555442223366888889999999998764
No 132
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.80 E-value=9e+02 Score=29.08 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=12.8
Q ss_pred HHHHHHhhheeCHHHHHHHHHHH
Q 008590 336 WALVSVVQFVIGKRFYTAAGRAL 358 (560)
Q Consensus 336 ~~la~~v~~~~g~~~~~~a~~~l 358 (560)
++++..++.+..+|+++.++...
T Consensus 636 ~i~~~~~l~~~~~~~~~~~~~~~ 658 (1109)
T PRK10929 636 FILLCGALSLVTLSLKRAGIPLY 658 (1109)
T ss_pred HHHHHHHHHHHHHHHHhcccchh
Confidence 33444444445567777776643
No 133
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=32.68 E-value=5.2e+02 Score=25.86 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=7.5
Q ss_pred eecceEEEEEEEec
Q 008590 512 NLHGVLHIQATKVG 525 (560)
Q Consensus 512 ~~~g~~~~~v~~~g 525 (560)
.+...+.+.|+++-
T Consensus 329 ~ig~~~~V~VtsvL 342 (356)
T COG4956 329 LIGKTVQVEVTSVL 342 (356)
T ss_pred hCCCeeEEEEeehh
Confidence 33445666666554
No 134
>PRK08433 flagellar motor switch protein; Validated
Probab=32.54 E-value=1.7e+02 Score=24.38 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=14.8
Q ss_pred CCcEEEeee-eecceEEEEEEEecc
Q 008590 503 NSPVIGGTI-NLHGVLHIQATKVGS 526 (560)
Q Consensus 503 g~~v~aGt~-~~~g~~~~~v~~~g~ 526 (560)
|-.+|-|.. ..+|..=++++..-.
T Consensus 75 g~~~f~G~~G~~~~k~AVrI~e~i~ 99 (111)
T PRK08433 75 GRIIGKGEVMVYEKNLAIRINEILD 99 (111)
T ss_pred CEEEEEEEEEEECCEEEEEEEEecC
Confidence 344677775 445677777777643
No 135
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=31.57 E-value=47 Score=28.21 Aligned_cols=53 Identities=26% Similarity=0.375 Sum_probs=37.8
Q ss_pred CCEEEEcCCC---ccCcceEEEe--------------ccc----e-eecccccCCCcccccCCCCcEEEeeeeec
Q 008590 462 GDTLKVLPGT---KLPADGIVVW--------------GTS----Y-VNESMVTGEAVPVLKEINSPVIGGTINLH 514 (560)
Q Consensus 462 GDii~v~~g~---~iP~Dg~v~~--------------g~~----~-vdes~lTGEs~pv~k~~g~~v~aGt~~~~ 514 (560)
||=+-+.|-+ .-|+||.|.. |-- . +|...|.||..-...+.||.|-+|+.+.+
T Consensus 26 G~G~aI~P~~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGidTV~L~G~gF~~~v~~Gd~V~~G~~l~~ 100 (121)
T TIGR00830 26 GDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEGQRVKKGDPLLE 100 (121)
T ss_pred cceEEEEcCCCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeceeecCCCceEEEecCCCEEcCCCEEEE
Confidence 4555555422 2588888872 221 1 78899999999888999999999988753
No 136
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=31.46 E-value=48 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=25.6
Q ss_pred eecccccCCCcccccCCCCcEEEeeeeec
Q 008590 486 VNESMVTGEAVPVLKEINSPVIGGTINLH 514 (560)
Q Consensus 486 vdes~lTGEs~pv~k~~g~~v~aGt~~~~ 514 (560)
+|...|.||..-...+.||.|-+|+.+.+
T Consensus 72 idTv~l~g~gF~~~vk~Gd~V~~G~~l~~ 100 (124)
T cd00210 72 IDTVKLNGEGFTSHVEEGQRVKQGDKLLE 100 (124)
T ss_pred eeeeecCCCceEEEecCCCEEcCCCEEEE
Confidence 68889999999888999999999998763
No 137
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=30.60 E-value=1.1e+02 Score=28.61 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=33.0
Q ss_pred HHHHhhhcc--CCCeeEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcC
Q 008590 218 HFLEGILSN--FKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 264 (560)
Q Consensus 218 ~~ie~~l~~--~~gV~~~~vn~~~~~~~v~ydp~~~~~~~l~~~i~~~g 264 (560)
..+.+.|.+ .+||.++.... .++.|.|||..++..++.+.++...
T Consensus 28 ~al~~~l~~~~~~gi~e~vp~~--~sllV~fdp~~~~~~~l~~~l~~~~ 74 (202)
T PF02682_consen 28 LALARALRAAPLPGIVEVVPAY--RSLLVHFDPLRIDRAALRAALEELL 74 (202)
T ss_dssp HHHHHHHHHHT-TTEEEEEEES--SEEEEEESTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEeeccc--cEEEEEEcCCcCCHHHHHHHHHHhh
Confidence 444555555 78887766554 6899999999999999888888653
No 138
>PRK06788 flagellar motor switch protein; Validated
Probab=29.96 E-value=1.3e+02 Score=25.44 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=39.2
Q ss_pred eeCCCcCcCCEEEEcCCCccCcceEEEeccceeecccccCCCcccccCC-CCcEEEeee-eecceEEEEEEEecchhHHH
Q 008590 454 IDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEI-NSPVIGGTI-NLHGVLHIQATKVGSDAVLS 531 (560)
Q Consensus 454 v~~~~l~~GDii~v~~g~~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~-g~~v~aGt~-~~~g~~~~~v~~~g~~t~~~ 531 (560)
....++..+|++.+++||.||.|-.+ ++ |+.-.. |-.+|-|.. +.++..-++++....+-.-+
T Consensus 42 LG~t~ltl~DlL~L~vGDVI~Ldk~~-------------~d--pv~v~Vng~~~f~G~~Gv~~~~~AVrItei~~~~~~~ 106 (119)
T PRK06788 42 LGKASITLGDVKQLKVGDVLEVEKNL-------------GH--KVDVYLSNMKVGIGEAIVMDEKFGIIISEIEADKKQA 106 (119)
T ss_pred EecceecHHHHhCCCCCCEEEeCCcC-------------CC--CEEEEECCEEEEEEEEEEECCEEEEEEEEecChHHHH
Confidence 33445566666666677666665421 11 233333 334666765 55678889999998866544
Q ss_pred HHHH
Q 008590 532 QIIS 535 (560)
Q Consensus 532 ~i~~ 535 (560)
.+.+
T Consensus 107 ~~~~ 110 (119)
T PRK06788 107 ALMK 110 (119)
T ss_pred HHHH
Confidence 4443
No 139
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=29.00 E-value=1.1e+03 Score=28.35 Aligned_cols=47 Identities=28% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHHHhcCCCCeeEEEeecc-CCeEEEEeCCCC-----CCHHHHHHHHHhcCC
Q 008590 145 SVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDIANAIEDAGF 191 (560)
Q Consensus 145 ~ie~~l~~~~gv~~~~v~~~-~~~~~v~~d~~~-----~~~~~i~~~l~~~G~ 191 (560)
.++..|.++|||.++.+.-. .+.+.|..|+.+ ++..++.+.|.....
T Consensus 170 ~l~~~L~~i~GV~~V~~~G~~~~ei~V~iD~~kl~~~glt~~dV~~~l~~~~~ 222 (1051)
T TIGR00914 170 IIRPQLRTVPGVAEVNSIGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNNQ 222 (1051)
T ss_pred HHHHHHhcCCCceEeeecCCceEEEEEEECHHHHHHcCCCHHHHHHHHHHhCc
Confidence 47889999999999988533 357788888754 678899999987643
No 140
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=28.68 E-value=38 Score=37.27 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCCcCcCCEEEEc-CCCccC-cceEEEec
Q 008590 456 ALLIQSGDTLKVL-PGTKLP-ADGIVVWG 482 (560)
Q Consensus 456 ~~~l~~GDii~v~-~g~~iP-~Dg~v~~g 482 (560)
-.+|.+||.|.|+ +||.|| +++++.+-
T Consensus 365 rkdIrIGDtV~V~kAGdVIP~V~~Vv~e~ 393 (667)
T COG0272 365 RKDIRIGDTVVVRKAGDVIPQVVGVVLEK 393 (667)
T ss_pred hcCCCCCCEEEEEecCCCCcceeeeeccc
Confidence 4788999999987 599999 89988765
No 141
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=28.63 E-value=6.6e+02 Score=25.83 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=16.9
Q ss_pred HHHHHhcCCceEEEEEecCCC
Q 008590 426 IKKLVELAPATALLVVKDKVG 446 (560)
Q Consensus 426 ~~~l~~~~~~~~~v~~~~~~g 446 (560)
+-+|..++|.-...++++.||
T Consensus 245 LLELR~lqp~f~lkivRspDG 265 (531)
T KOG3814|consen 245 LLELRQLQPQFTLKIVRSPDG 265 (531)
T ss_pred HHHHHhcCccEEEEEEECCCc
Confidence 456778899888888888888
No 142
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=28.09 E-value=1.3e+02 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=14.0
Q ss_pred CCCcCcCCEEEEcCCCc
Q 008590 456 ALLIQSGDTLKVLPGTK 472 (560)
Q Consensus 456 ~~~l~~GDii~v~~g~~ 472 (560)
+.++++||.|+++.|--
T Consensus 33 v~~~~vGD~VLVH~G~A 49 (76)
T TIGR00074 33 VGEVKVGDYVLVHVGFA 49 (76)
T ss_pred eCCCCCCCEEEEecChh
Confidence 45789999999999843
No 143
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=27.65 E-value=97 Score=33.56 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=40.2
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeeccC------------------CeEEEEeCCCCCCHHHHHHHHHh
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALAT------------------SLGEVEYDPTVISKDDIANAIED 188 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~~------------------~~~~v~~d~~~~~~~~i~~~l~~ 188 (560)
++|=+-+|..+.+++||.++.+-++. +.+.|.|||.+++.++|.+..-+
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~~ 271 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYFR 271 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHHH
Confidence 46889999999999999988875543 34889999999999998876654
No 144
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=26.28 E-value=34 Score=26.79 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=16.9
Q ss_pred CCCcCcCCEEEEc-CCCccC-cceEEE
Q 008590 456 ALLIQSGDTLKVL-PGTKLP-ADGIVV 480 (560)
Q Consensus 456 ~~~l~~GDii~v~-~g~~iP-~Dg~v~ 480 (560)
-.+|.+||.|.|. +||.|| +.+++.
T Consensus 47 ~~~i~~Gd~V~V~raGdVIP~I~~vv~ 73 (82)
T PF03120_consen 47 ELDIRIGDTVLVTRAGDVIPKIVGVVK 73 (82)
T ss_dssp HTT-BBT-EEEEEEETTTEEEEEEE-G
T ss_pred HcCCCCCCEEEEEECCCccceEeEeeh
Confidence 4578899999886 599999 555543
No 145
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=25.62 E-value=3.2e+02 Score=21.12 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHH
Q 008590 143 VNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAI 186 (560)
Q Consensus 143 ~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l 186 (560)
...+.++|.++||+.=...+.. +++.|..+.. +.+++.+.+
T Consensus 17 ~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~--~~~~~~~~~ 57 (79)
T PF03927_consen 17 LEEVAEALAAIPGVEVHAVDED-GKIVVTIEAE--SSEEEVDLI 57 (79)
T ss_dssp HHHHHHHHCCSTTEEEEEEETT-TEEEEEEEES--SHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeC--ChHHHHHHH
Confidence 4567777777777754344433 6666665542 344444443
No 146
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=25.10 E-value=1.3e+02 Score=21.34 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=26.1
Q ss_pred CceEEEEEecCCCcceeeEEee-CCCcCcCCEEEEcCCCccCc
Q 008590 434 PATALLVVKDKVGKCIEEREID-ALLIQSGDTLKVLPGTKLPA 475 (560)
Q Consensus 434 ~~~~~v~~~~~~g~~~~~~~v~-~~~l~~GDii~v~~g~~iP~ 475 (560)
.+.+.|.+ .|| ++..++ ....++||.|.+.+.++.+.
T Consensus 5 ~~~aiVlT--~dG---eF~~ik~~~~~~vG~eI~~~~~~~~~~ 42 (56)
T PF12791_consen 5 KKYAIVLT--PDG---EFIKIKRKPGMEVGQEIEFDEKDIINK 42 (56)
T ss_pred CCEEEEEc--CCC---cEEEEeCCCCCcccCEEEEechhhccc
Confidence 34566654 677 666675 33599999999999887653
No 147
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=24.98 E-value=3.5e+02 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=16.5
Q ss_pred HHHHHHhccHHHHHHHHHhcCCceEEEEE
Q 008590 413 YLEILAKGKTSDAIKKLVELAPATALLVV 441 (560)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ 441 (560)
++-.+..+|..+..+++++...+.-.|++
T Consensus 24 Fli~RPQrKr~K~~~~ml~sL~kGD~VvT 52 (97)
T COG1862 24 FLIIRPQRKRMKEHQELLNSLKKGDEVVT 52 (97)
T ss_pred HhhcCHHHHHHHHHHHHHHhccCCCEEEE
Confidence 44556666666666666655444445553
No 148
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=24.44 E-value=5.6e+02 Score=25.57 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=52.2
Q ss_pred hhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhhhhccCCCCCCCCCeeEEEeecCCC
Q 008590 58 AACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGM 137 (560)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~gm 137 (560)
..|...+++.+++.+||.++++- + ..+...+..+..|+. ..... + ..|-...+.++++.
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~-----------s---re~~l~~L~~~lg~~-~~~~l-~----~nPLP~~~vV~~~~- 129 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI-----------S---REEALKELQPWLGFG-ALLML-D----ENPLPDVFVVTPDD- 129 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe-----------C---HHHHHHHHHHHcCch-hhhcC-C----CCCCCceEEEEeCC-
Confidence 88999999999999999987764 1 223444455667775 21111 1 11222345555554
Q ss_pred CchhhHHHHHHHhcCCCCeeEEEe
Q 008590 138 TCAACVNSVEGILRGLPGVKRAVV 161 (560)
Q Consensus 138 ~C~~C~~~ie~~l~~~~gv~~~~v 161 (560)
+.-...+.+.+++++||.++.-
T Consensus 130 --p~~~~~i~~~l~~l~gV~~V~~ 151 (297)
T COG2177 130 --PPQVKAIAAALRDLPGVAEVDD 151 (297)
T ss_pred --CccHHHHHHHHHcCccceehhc
Confidence 4446788999999999986543
No 149
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=24.08 E-value=74 Score=28.77 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=42.0
Q ss_pred cCCEEEEcCCCc---cCcceEEEe--------------ccc-e----eecccccCCCcccccCCCCcEEEeeeee
Q 008590 461 SGDTLKVLPGTK---LPADGIVVW--------------GTS-Y----VNESMVTGEAVPVLKEINSPVIGGTINL 513 (560)
Q Consensus 461 ~GDii~v~~g~~---iP~Dg~v~~--------------g~~-~----vdes~lTGEs~pv~k~~g~~v~aGt~~~ 513 (560)
.||=+-+.|-+- =|+||.|.. |.- + +|.-.|.||-.-...+.||.|-+|+.++
T Consensus 47 mGdGvAI~P~~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~ 121 (169)
T PRK09439 47 VGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPII 121 (169)
T ss_pred ccceEEEEccCCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCCceEEEecCCCEEeCCCEEE
Confidence 488888887432 589999872 322 1 7889999999999999999999999877
No 150
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=1.8e+02 Score=26.16 Aligned_cols=48 Identities=38% Similarity=0.551 Sum_probs=38.2
Q ss_pred hhhHHHHHHHhcCCCCeeEEEeecc-------------------CCeEEEEeCCCCCCHHHHHHHHH
Q 008590 140 AACVNSVEGILRGLPGVKRAVVALA-------------------TSLGEVEYDPTVISKDDIANAIE 187 (560)
Q Consensus 140 ~~C~~~ie~~l~~~~gv~~~~v~~~-------------------~~~~~v~~d~~~~~~~~i~~~l~ 187 (560)
.+|=+-+|.+..+++||...+|-++ ++.+.|.|||..++-++|.+..=
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw 97 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFW 97 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHH
Confidence 4688999999999999988777654 34577889998888888877654
No 151
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=23.24 E-value=2e+02 Score=25.95 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=35.0
Q ss_pred hHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCC--CCCHHHHHHHHH
Q 008590 142 CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPT--VISKDDIANAIE 187 (560)
Q Consensus 142 C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~--~~~~~~i~~~l~ 187 (560)
=+..+.+.+.+++||.++.+=...+.+.|-++.. ....++|.+.++
T Consensus 76 ~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~~~~~~~~~i~~~V~ 123 (177)
T PF09580_consen 76 LADRIANRVKKVPGVEDATVVVTDDNAYVAVDLDFNRFNTKKIKKKVE 123 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEEECCEEEEEEEecccccchhHHHHHHH
Confidence 4789999999999999999988888888887765 333444444443
No 152
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=23.12 E-value=5.1e+02 Score=24.65 Aligned_cols=92 Identities=10% Similarity=0.086 Sum_probs=52.7
Q ss_pred HHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCC-C-HHHHHHHHHhcCCceeeecc---CCce--eEEEEEeccc-chh
Q 008590 144 NSVEGILRGLPGVKRAVVALATSLGEVEYDPTVI-S-KDDIANAIEDAGFEASFVQS---SGQD--KILLQVTGVL-CEL 215 (560)
Q Consensus 144 ~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~-~-~~~i~~~l~~~G~~~~~~~~---~~~~--~~~~~v~g~~-c~~ 215 (560)
..+++.+++.+.-.. ....-.+.+..++... . ...+.+.+++.+|...-.+. .+.. .++..+.... ...
T Consensus 124 ~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~ 200 (225)
T PRK15385 124 REAAQRINQLPVSAE---GEKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRK 200 (225)
T ss_pred HHHHHHHhhcccccc---cceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchh
Confidence 457777777664211 1111233444443321 1 35677888888998765543 2233 3333333322 345
Q ss_pred hHHHHHhhhccCCCeeEEEeecC
Q 008590 216 DAHFLEGILSNFKGVRQFRFDKI 238 (560)
Q Consensus 216 c~~~ie~~l~~~~gV~~~~vn~~ 238 (560)
....+-..|+..|||.++.++..
T Consensus 201 ~le~iv~~L~~~pgV~~v~W~~~ 223 (225)
T PRK15385 201 TRELIISRIGDNDNITAIHWSID 223 (225)
T ss_pred hHHHHHHHHhCCCCeEEEEEEec
Confidence 55777778889999999998754
No 153
>PRK04435 hypothetical protein; Provisional
Probab=22.94 E-value=4.6e+02 Score=22.97 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=40.4
Q ss_pred CHHHHHHHHHhcCCchhhhhccCCCCCCCCCeeEEEeecCCCCchhhHHHHHHHhcCCCCeeEEEe
Q 008590 96 KDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (560)
Q Consensus 96 ~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gv~~~~v 161 (560)
...++.+.+.+.|-.+..+..+. +..+...+.+.++--........+-+.|.+++||.++.+
T Consensus 82 lLs~Il~~IA~~~aNIltI~q~i----~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i 143 (147)
T PRK04435 82 TLSKVLNVIAEAGGNILTINQSI----PLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVEL 143 (147)
T ss_pred HHHHHHHHHHHcCCCeEEEEEEc----CCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEE
Confidence 46788888888887665443321 112333444555443344468899999999999998875
No 154
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=22.92 E-value=98 Score=27.70 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=32.5
Q ss_pred eCCCcCcCCEEEEcCCCccC--cceEEEeccceeecccccCCCccccc--CCCCc-EEEeeeeecceEEEE
Q 008590 455 DALLIQSGDTLKVLPGTKLP--ADGIVVWGTSYVNESMVTGEAVPVLK--EINSP-VIGGTINLHGVLHIQ 520 (560)
Q Consensus 455 ~~~~l~~GDii~v~~g~~iP--~Dg~v~~g~~~vdes~lTGEs~pv~k--~~g~~-v~aGt~~~~g~~~~~ 520 (560)
+...+++|.-+.|..|..+| +|.+|..=.+.+.+..++ +.+ .+|+. -..|+.+..|.+.+.
T Consensus 80 ~~~~l~~g~av~I~TGa~vP~g~DaVV~~E~~~~~~~~i~-----i~~~~~~g~nIr~~G~di~~G~~ll~ 145 (162)
T PF03453_consen 80 PPIPLQPGEAVRIMTGAPVPEGADAVVPIEDTEVEGDEIR-----ILKPVKPGQNIRPKGEDIKKGEVLLK 145 (162)
T ss_dssp -SSB--TTEEEEE-TTSB--TT-SEEEEGGGCEEETTEEE-----ESS--STTTTEE-TTSSB-TTSEEE-
T ss_pred ccccCCCCeEEEEeCCCccCCCCCEEEEehheeecccEEE-----EeeccCCCCcEEeCCccccCCCEEEC
Confidence 34789999999999999999 899887555554443222 222 33433 456666666666554
No 155
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=22.87 E-value=4e+02 Score=24.65 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=44.9
Q ss_pred ecCCCCchhhHHHHHHHhcCCCCeeEEEeeccCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCCceeEEEEEe
Q 008590 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSGQDKILLQVT 209 (560)
Q Consensus 133 ~i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~d~~~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~v~ 209 (560)
...|+.|+.-.-...+++.+++. .+.+.|..|.. ...+.|.+.++..||++...+.+ .+..++.+.
T Consensus 2 D~rGl~CP~Pvi~tKkal~~l~~---------g~~L~VlvD~~-~a~~nV~~~~~~~G~~v~~~e~~-~~~~~i~i~ 67 (194)
T TIGR03527 2 DARGLACPQPVILTKKALDELGE---------EGVLTVIVDNE-AAKENVSKFATSLGYEVEVEEKE-EGYWILIIK 67 (194)
T ss_pred CCCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEEEEec-CCEEEEEEE
Confidence 45789999999999999998862 12334444433 45788999999999998754332 233444443
No 156
>PRK10726 hypothetical protein; Provisional
Probab=22.85 E-value=3.2e+02 Score=22.26 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhheeCHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHH
Q 008590 332 DWLNWALVSVVQFVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALL 385 (560)
Q Consensus 332 ~~~~~~la~~v~~~~g~~~~~~a~~~l~~~~~~md~Li~l~~~~a~~~s~~~~~ 385 (560)
.|..++--.|+....|. +++.+.++++-..++....++.+.++-+|.++
T Consensus 54 TWPFFLALmPvsVlvGi-----~l~~Ll~g~l~~s~l~t~l~V~~lFwllF~~L 102 (105)
T PRK10726 54 TWPFFLALMPVSVLVGI-----ALHSLLRGKLLYSILFTLLTVGCLFWLLFSWL 102 (105)
T ss_pred HHHHHHHHhHHHHHHHH-----HHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333455443333 56667777776666666666655555444443
No 157
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=22.67 E-value=3.4e+02 Score=28.16 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=13.5
Q ss_pred HHHHHhcCCceEEEEEecCCC
Q 008590 426 IKKLVELAPATALLVVKDKVG 446 (560)
Q Consensus 426 ~~~l~~~~~~~~~v~~~~~~g 446 (560)
-+.++...|.-+||-+. ..|
T Consensus 145 e~~l~~~~~~i~WV~v~-i~G 164 (382)
T TIGR02876 145 ERKLLDRVPEIMWAGVR-VRG 164 (382)
T ss_pred HHHHHhhCCCcEEEEEE-EEe
Confidence 35567777888888755 345
No 158
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=21.13 E-value=7.6e+02 Score=23.91 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=26.2
Q ss_pred HHHHhhhccCCCeeEEEeecC-------------CCeEEEEeCCC
Q 008590 218 HFLEGILSNFKGVRQFRFDKI-------------SGELEVLFDPE 249 (560)
Q Consensus 218 ~~ie~~l~~~~gV~~~~vn~~-------------~~~~~v~ydp~ 249 (560)
..+++.|+.++||.+++|+.. +.++.++|.|.
T Consensus 110 gELarTI~~idgV~~ArVhL~lP~~~~~~~~~~asASV~I~~~~~ 154 (249)
T PRK15348 110 QRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQ 154 (249)
T ss_pred HHHHHHHHhCCCeeEeEEEEECCCCCcccCCCCccEEEEEEeCCC
Confidence 678899999999999887653 57778889886
No 159
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=20.68 E-value=97 Score=30.41 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.5
Q ss_pred EEeeCCCcCcCCEEEEcCCCc
Q 008590 452 REIDALLIQSGDTLKVLPGTK 472 (560)
Q Consensus 452 ~~v~~~~l~~GDii~v~~g~~ 472 (560)
..+++.+|.|||-|++..++.
T Consensus 341 ~pvSV~eLk~GD~vlv~~ee~ 361 (376)
T COG1465 341 EPVSVAELKPGDEVLVYLEEK 361 (376)
T ss_pred cEeeeEecCCCCEEEEEehhc
Confidence 678999999999999998763
No 160
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=20.61 E-value=4.1e+02 Score=20.62 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCCHH--HHHHHHHhcCCc
Q 008590 167 LGEVEYDPTVISKD--DIANAIEDAGFE 192 (560)
Q Consensus 167 ~~~v~~d~~~~~~~--~i~~~l~~~G~~ 192 (560)
++.|.+-++..+++ .|.+.|..+||.
T Consensus 4 ~V~V~~K~gvlDPqG~ai~~al~~lG~~ 31 (80)
T PF02700_consen 4 RVEVTLKPGVLDPQGEAIKRALHRLGYD 31 (80)
T ss_dssp EEEEEE-TTS--HHHHHHHHHHHHTT-T
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCCc
Confidence 46778888888886 799999999998
No 161
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=20.15 E-value=97 Score=26.77 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=38.0
Q ss_pred cCCEEEEcCCC-c--cCcceEEE--------------eccce-----eecccccCCCcccccCCCCcEEEeeeee
Q 008590 461 SGDTLKVLPGT-K--LPADGIVV--------------WGTSY-----VNESMVTGEAVPVLKEINSPVIGGTINL 513 (560)
Q Consensus 461 ~GDii~v~~g~-~--iP~Dg~v~--------------~g~~~-----vdes~lTGEs~pv~k~~g~~v~aGt~~~ 513 (560)
.||=+-+.|-+ . -|+||.|. +|--. +|...|.||-.-...+.||.|-+|..++
T Consensus 29 lG~GvaI~p~~~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~ 103 (132)
T PF00358_consen 29 LGDGVAIIPSDGKVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLI 103 (132)
T ss_dssp SSEEEEEEESSSEEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEE
T ss_pred CcCEEEEEcCCCeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCCCEEECCCEEE
Confidence 56767666632 2 58999887 23221 7888899999988889999999999876
No 162
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=20.06 E-value=2.1e+02 Score=26.49 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=39.9
Q ss_pred eCCCCChhhHHHHHHHhcCCCCeeEEEEEecCCeEEEEECCCCCCHHHHHHHHHhcCCchhh
Q 008590 52 VTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (560)
Q Consensus 52 i~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 113 (560)
..|+.||......++++++++. .....+..|++ .+.+.+.......||....
T Consensus 3 ~rGl~CP~Pvi~tKkal~~l~~---------g~~L~VlvD~~-~a~~nV~~~~~~~G~~v~~ 54 (194)
T TIGR03527 3 ARGLACPQPVILTKKALDELGE---------EGVLTVIVDNE-AAKENVSKFATSLGYEVEV 54 (194)
T ss_pred CCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEE
Confidence 5689999999999999998762 33455555554 4567888889999998854
Done!