BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008591
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 327 bits (839), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 182/426 (42%), Positives = 256/426 (60%), Gaps = 15/426 (3%)
Query: 131 YKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIVDKQK 189
Y A+ + FG GA +++ E YL+ ++L+ +PN G ++ C+SW+ K
Sbjct: 95 YDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTD 154
Query: 190 RIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKE- 248
RIFF N +YLPS+TP L + R EEL N++GDG GERK +RIYDYDVYNDL P+ E
Sbjct: 155 RIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEK 214
Query: 249 LARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYS 308
ARPVLGG PYPRR RTGR K+ DP SE +Y+PRDEAF +K F A + S
Sbjct: 215 YARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPGDFVYLPRDEAFGHLKSSDFLAYGIKS 274
Query: 309 GLHALVPFLEAILIDK--DLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVS 366
++P L L F + +++ K++ G+ LP I+ LF+T
Sbjct: 275 VAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVTLPTNFLSNITPIPIIKELFRT-- 332
Query: 367 NTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGP 426
G++ ++ P+ + DK W+ +EEF RET+AGLNP IK++ + PL S LD + YG
Sbjct: 333 -DGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGD 391
Query: 427 PESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGST--LYGSRA 484
IT E +E +GGL TV +AI+ KKLFI+D+HD L+PY LR+I +T Y +R
Sbjct: 392 HTCIITKEHLEPNLGGL-TVEQAIQNKKLFILDHHDYLIPY---LRKINANTTKTYATRT 447
Query: 485 LFFLNPDGTLRPLAIELTRPPLDGKPQW--KQVFTPSRHSTDSWLWTLAKAHFLVHDTGY 542
+FFL DGTL PLAIEL++P G+ +V+ PS ++++W LAKA+ +V+D Y
Sbjct: 448 IFFLKNDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDACY 507
Query: 543 HQLISH 548
HQ+ISH
Sbjct: 508 HQIISH 513
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 186/436 (42%), Positives = 263/436 (60%), Gaps = 26/436 (5%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G +K + G GA +++ TE +L + L+ +PN G ++ C+SWI +
Sbjct: 95 GQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKL 154
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N++YLPS+TP L + R EEL+NL+GDG GERK ERIYDYDVYNDL P+
Sbjct: 155 FKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPD 214
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E ARPVLGG + PYPRR RTGR + DP SESRS +Y+PRDEAF +K F
Sbjct: 215 KGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLT 274
Query: 304 SSLYSGLHALVPFLEAILIDKDLGFS-----SLSDIDKVFNEGIELPPEL--KDQPLWQK 356
L S ++P L++ DL F+ S ++ +++ GI+LP ++ K P
Sbjct: 275 YGLKSVSQNVLPLLQSAF---DLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISP---- 327
Query: 357 ILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLK 416
LP+L + G++ +F P+ + K W+ +EEF RE LAG+NP I+ L P +
Sbjct: 328 -LPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKDFPPR 386
Query: 417 STLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEG 476
S LD ++YG S IT E +E + GL TV+EAI+ K+LF++D+HD ++PY LR+I
Sbjct: 387 SKLDSQVYGDHTSQITKEHLEPNLEGL-TVDEAIQNKRLFLLDHHDPIMPY---LRRINA 442
Query: 477 STL--YGSRALFFLNPDGTLRPLAIELT--RPPLDGKPQWKQVFTPSRHSTDSWLWTLAK 532
++ Y +R + FL DGTLRPLAIEL+ P D + QVF P+ +S +W LAK
Sbjct: 443 TSTKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAK 502
Query: 533 AHFLVHDTGYHQLISH 548
A+ +V+D+ YHQL+SH
Sbjct: 503 AYVVVNDSCYHQLVSH 518
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 322 bits (825), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 186/436 (42%), Positives = 263/436 (60%), Gaps = 26/436 (5%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G +K + G GA +++ TE +L + L+ +PN G ++ C+SWI +
Sbjct: 95 GQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKL 154
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N++YLPS+TP L + R EEL+NL+GDG GERK ERIYDYDVYNDL P+
Sbjct: 155 FKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPD 214
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E ARPVLGG + PYPRR RTGR + DP SESRS +Y+PRDEAF +K F
Sbjct: 215 KGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLT 274
Query: 304 SSLYSGLHALVPFLEAILIDKDLGFS-----SLSDIDKVFNEGIELPPEL--KDQPLWQK 356
L S ++P L++ DL F+ S ++ +++ GI+LP ++ K P
Sbjct: 275 YGLKSVSQNVLPLLQSAF---DLNFTPREFDSFDEVHGLYSGGIKLPTDIISKISP---- 327
Query: 357 ILPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLK 416
LP+L + G++ +F P+ + K W+ +EEF RE LAG+NP I+ L P +
Sbjct: 328 -LPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKDFPPR 386
Query: 417 STLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEG 476
S LD ++YG S IT E +E + GL TV+EAI+ K+LF++D+HD ++PY LR+I
Sbjct: 387 SKLDSQVYGDHTSQITKEHLEPNLEGL-TVDEAIQNKRLFLLDHHDPIMPY---LRRINA 442
Query: 477 STL--YGSRALFFLNPDGTLRPLAIELT--RPPLDGKPQWKQVFTPSRHSTDSWLWTLAK 532
++ Y +R + FL DGTLRPLAIEL+ P D + QVF P+ +S +W LAK
Sbjct: 443 TSTKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAK 502
Query: 533 AHFLVHDTGYHQLISH 548
A+ +V+D+ YHQL+SH
Sbjct: 503 AYVVVNDSCYHQLVSH 518
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 305 bits (780), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 171/417 (41%), Positives = 244/417 (58%), Gaps = 13/417 (3%)
Query: 139 ASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIVDKQKRIFFTNKS 197
ASFG GA +++ E +L + L+ +PN G + C+SW+ K+ RIFF N +
Sbjct: 115 ASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDT 174
Query: 198 YLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKELARPVLGGE 257
YLPS TP L + R EE L+GDG G+RK +RIYDYDVYNDL P+ + RP+LGG
Sbjct: 175 YLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGD-PRPILGGC 233
Query: 258 E-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPF 316
+PYP R RTGR ++ DP SE + +YVPRDE F +K F + S H ++P
Sbjct: 234 SIYPYPLRVRTGRERTRTDPNSE-KPGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPL 292
Query: 317 LEAILIDKDLG---FSSLSDIDKVFNEGIELPPELKDQPLWQKILPILFKTVSNTGKEVF 373
++ + + F S D+ ++ GI+LP ++ Q LP L + G+ V
Sbjct: 293 FKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQ---ISPLPALKEIFRTDGENVL 349
Query: 374 RFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITT 433
+F P K + +EEF RE +AG+NP I+ L + P KSTLDP +YG S IT
Sbjct: 350 QFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITK 409
Query: 434 ELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGT 493
E +E +GG +TV EA+ ++LFI+DY DA +PY+ ++ + + Y +R + FL DGT
Sbjct: 410 EQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGT 468
Query: 494 LRPLAIELTRPPLDGKPQWKQ--VFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISH 548
L+PLAIEL++P DG + V P+ DS +W LAKAH +V+D+GYHQL+SH
Sbjct: 469 LKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSH 525
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 295 bits (755), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 295 bits (754), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 166/433 (38%), Positives = 247/433 (57%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + + ++ G T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSL--DLDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 295 bits (754), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 295 bits (754), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 295 bits (754), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 295 bits (754), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 295 bits (754), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 294 bits (753), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 294 bits (753), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YHQL+SH
Sbjct: 487 IVNDSCYHQLMSH 499
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/433 (37%), Positives = 246/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YH+L+SH
Sbjct: 487 IVNDSCYHELMSH 499
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/433 (37%), Positives = 245/433 (56%), Gaps = 21/433 (4%)
Query: 127 GNIKYKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIV 185
G + + S G GA +++ E +L+ + L+ + N G + C+SW+ +
Sbjct: 77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 136
Query: 186 DKQKRIFFTNKSYLPSQTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPE 245
K RIFF N +Y+PS+TP L R EEL +L+G+G GERK ++RIYDYDVYNDL P+
Sbjct: 137 YKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPD 196
Query: 246 IKE-LARPVLGGEE-HPYPRRCRTGRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSA 303
E LARPVLGG PYPRR RTGR + DP +E + YVPRDE +K S
Sbjct: 197 KSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLK----SK 252
Query: 304 SSLYSGLHALV----PFLEAILIDKD--LGFSSLSDIDKVFNEGIELPPELKDQPLWQKI 357
+L G +L P E+ K + F S D+ ++ GI+LP ++ +
Sbjct: 253 DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTII---P 309
Query: 358 LPILFKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKS 417
LP++ + G+ + +F P V + W+ +EEF RE +AG+NP I+ L + P KS
Sbjct: 310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKS 369
Query: 418 TLDPEIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGS 477
LDP IYG S IT + ++ + T++EA+ ++LF++DYHD +PYV ++ Q+ +
Sbjct: 370 NLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSA 426
Query: 478 TLYGSRALFFLNPDGTLRPLAIELTRPPLDG--KPQWKQVFTPSRHSTDSWLWTLAKAHF 535
Y +R + FL DGTL+P+AIEL+ P G QV P++ +S +W LAKA+
Sbjct: 427 KTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYV 486
Query: 536 LVHDTGYHQLISH 548
+V+D+ YH L+SH
Sbjct: 487 IVNDSCYHALMSH 499
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
Length = 698
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 21/163 (12%)
Query: 387 FWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTV 446
+W + FG + L G NP I+ +LP + E++E+ + T+
Sbjct: 250 YWRDDVWFGSQFLNGSNPEVIRRCDKLP------------ENFPVKNEMVEKLLDRGYTL 297
Query: 447 NEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGS-RALFFLNPDGTLRPLAIELTRPP 505
+A+K+ +FI DY +L + + E + LF+L + + P+AI+L + P
Sbjct: 298 EKAMKEGLIFITDY--KILEGIPTMDTPEDKRYITTPLGLFYLKNNDDIIPIAIQLYQQP 355
Query: 506 LDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISH 548
+ W TP + + W W +AK DT YHQ+I+H
Sbjct: 356 GENNSIW----TPLKDT--EWDWIMAKLWLRCADTQYHQMITH 392
>pdb|3V98|A Chain A, S663d Stable-5-Lox
pdb|3V98|B Chain B, S663d Stable-5-Lox
pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
Length = 691
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 388 WIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVN 447
W + FG + L G NP I+ ++LP K +TTE++E + +++
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELPEKL------------PVTTEMVECSLERQLSLE 291
Query: 448 EAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLD 507
+ ++Q +FI+D+ K L L + N + P+AI+L + P D
Sbjct: 292 QEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGD 351
Query: 508 GKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISH 548
P +F PS D W LAK D HQ I+H
Sbjct: 352 ENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITH 385
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 377 TPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELI 436
TP DR W + FG + L G NP + LP +T E +
Sbjct: 592 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 635
Query: 437 EQEIGGLMTVNEAIKQKKLFIID---------YHDALLPYVG-----KLRQIEGSTLYGS 482
+ ++E IK ++I+D Y +L +G L+ E Y +
Sbjct: 636 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 695
Query: 483 R--ALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDT 540
ALF++N G L P+AI++ + P P W TP H + W +AK V ++
Sbjct: 696 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 749
Query: 541 GYHQLISH 548
+HQL +H
Sbjct: 750 NFHQLNTH 757
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
Length = 691
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 388 WIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVN 447
W + FG + L G NP I+ ++LP K +TTE++E + +++
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELPEKL------------PVTTEMVECSLERQLSLE 291
Query: 448 EAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLD 507
+ ++Q +FI+D+ K L L + N + P+AI+L + P D
Sbjct: 292 QEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGD 351
Query: 508 GKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISH 548
P +F PS D W LAK D HQ I+H
Sbjct: 352 ENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITH 385
>pdb|3V92|B Chain B, S663a Stable-5-Lox
pdb|3V92|A Chain A, S663a Stable-5-Lox
Length = 691
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 388 WIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVN 447
W + FG + L G NP I+ ++LP K +TTE++E + +++
Sbjct: 244 WQEDLMFGYQFLNGANPVLIRRCTELPEKL------------PVTTEMVECSLERQLSLE 291
Query: 448 EAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLD 507
+ ++Q +FI+D+ K L L + N + P+AI+L + P D
Sbjct: 292 QEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGD 351
Query: 508 GKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISH 548
P +F PS D W LAK D HQ I+H
Sbjct: 352 ENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITH 385
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 377 TPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELI 436
TP DR W + FG + L G NP + LP +T E +
Sbjct: 222 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 265
Query: 437 EQEIGGLMTVNEAIKQKKLFIID---------YHDALLPYVG-----KLRQIEGSTLYGS 482
+ ++E IK ++I+D Y +L +G L+ E Y +
Sbjct: 266 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 325
Query: 483 R--ALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDT 540
ALF++N G L P+AI++ + P P W TP H + W +AK V ++
Sbjct: 326 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 379
Query: 541 GYHQLISH 548
+HQL +H
Sbjct: 380 NFHQLNTH 387
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 377 TPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELI 436
TP DR W + FG + L G NP + LP +T E +
Sbjct: 222 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 265
Query: 437 EQEIGGLMTVNEAIKQKKLFIID---------YHDALLPYVG-----KLRQIEGSTLYGS 482
+ ++E IK ++I+D Y +L +G L+ E Y +
Sbjct: 266 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 325
Query: 483 R--ALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDT 540
ALF++N G L P+AI++ + P P W TP H + W +AK V ++
Sbjct: 326 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 379
Query: 541 GYHQLISH 548
+HQL +H
Sbjct: 380 NFHQLNTH 387
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 377 TPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELI 436
TP DR W + FG + L G NP + LP +T E +
Sbjct: 225 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 268
Query: 437 EQEIGGLMTVNEAIKQKKLFIID---------YHDALLPYVG-----KLRQIEGSTLYGS 482
+ ++E IK ++I+D Y +L +G L+ E Y +
Sbjct: 269 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 328
Query: 483 R--ALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDT 540
ALF++N G L P+AI++ + P P W TP H + W +AK V ++
Sbjct: 329 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 382
Query: 541 GYHQLISH 548
+HQL +H
Sbjct: 383 NFHQLNTH 390
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 377 TPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELI 436
TP DR W + FG + L G NP + LP +T E +
Sbjct: 222 TPNMADR----WHEDRWFGYQFLNGANPVILTRCDALP------------SNFPVTNEHV 265
Query: 437 EQEIGGLMTVNEAIKQKKLFIID---------YHDALLPYVG-----KLRQIEGSTLYGS 482
+ ++E IK ++I+D Y +L +G L+ E Y +
Sbjct: 266 NASLDRGKNLDEEIKDGHIYIVDFKVLVGAKSYGGPVLEDIGYKVPDHLKHDEADIRYCA 325
Query: 483 R--ALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDT 540
ALF++N G L P+AI++ + P P W TP H + W +AK V ++
Sbjct: 326 APLALFYVNKLGHLMPIAIQINQEPGPENPIW----TP--HEENEHDWMMAKFWLGVAES 379
Query: 541 GYHQLISH 548
+HQL +H
Sbjct: 380 NFHQLNTH 387
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
pdb|2P0M|B Chain B, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
Length = 662
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 76/189 (40%), Gaps = 27/189 (14%)
Query: 362 FKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDP 421
+KT+ + + +F + R + W + FG + L G NP ++ QLP + P
Sbjct: 197 WKTLDDFNR-IFWCGRSKLARRVRDSWQEDSLFGYQFLNGANPMLLRRSVQLPARLVFPP 255
Query: 422 EIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYG 481
+ EL Q + + +K LF D+ ALL + K I Y
Sbjct: 256 GM---------EELQAQ-------LEKELKAGTLFEADF--ALLDNI-KANVILYCQQYL 296
Query: 482 SRALFFL--NPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHD 539
+ L L PDG L P+ I+L P + P +F P+ +W LAK D
Sbjct: 297 AAPLVMLKLQPDGKLMPMVIQLHLPKIGSSP--PPLFLPTDPPM---VWLLAKCWVRSSD 351
Query: 540 TGYHQLISH 548
H+L SH
Sbjct: 352 FQVHELNSH 360
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase
Length = 662
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 76/189 (40%), Gaps = 27/189 (14%)
Query: 362 FKTVSNTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDP 421
+KT+ + + +F + R + W + FG + L G NP ++ QLP + P
Sbjct: 197 WKTLDDFNR-IFWCGRSKLARRVRDSWQEDSLFGYQFLNGANPMLLRRSVQLPARLVFPP 255
Query: 422 EIYGPPESAITTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYG 481
+ EL Q + + +K LF D+ ALL + K I Y
Sbjct: 256 GM---------EELQAQ-------LEKELKAGTLFEADF--ALLDNI-KANVILYCQQYL 296
Query: 482 SRALFFL--NPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHD 539
+ L L PDG L P+ I+L P + P +F P+ +W LAK D
Sbjct: 297 AAPLVMLKLQPDGKLMPMVIQLHLPKIGSSP--PPLFLPTDPPM---VWLLAKCWVRSSD 351
Query: 540 TGYHQLISH 548
H+L SH
Sbjct: 352 FQVHELNSH 360
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 137 IPASFGDVGAILVESDQLTEMY---LQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFF 193
I A G V I+ SD L E +Q++ G+ G + T D+W + + ++ +
Sbjct: 127 IVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXI--TGDNWRSAEAISRELNLDL 184
Query: 194 TNKSYLPSQTPNGLKRLRAEELNNLQGDG 222
LP Q +K+L+A+E+ GDG
Sbjct: 185 VIAEVLPHQKSEEVKKLQAKEVVAFVGDG 213
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 137 IPASFGDVGAILVESDQLTEMY---LQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFF 193
I A G V I+ SD L E +Q++ G+ G + T D+W + + ++ +
Sbjct: 519 IVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMI--TGDNWRSAEAISRELNLDL 576
Query: 194 TNKSYLPSQTPNGLKRLRAEELNNLQGDG 222
LP Q +K+L+A+E+ GDG
Sbjct: 577 VIAEVLPHQKSEEVKKLQAKEVVAFVGDG 605
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 137 IPASFGDVGAILVESDQLTEMY---LQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFF 193
I A G V I+ SD L E +Q++ G+ G + T D+W + + ++ +
Sbjct: 147 IVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMI--TGDNWRSAEAISRELNLDL 204
Query: 194 TNKSYLPSQTPNGLKRLRAEELNNLQGDG 222
LP Q +K+L+A+E+ GDG
Sbjct: 205 VIAEVLPHQKSEEVKKLQAKEVVAFVGDG 233
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 137 IPASFGDVGAILVESDQLTEMY---LQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFF 193
I A G V I+ SD L E +Q++ G+ G + T D+W + + ++ +
Sbjct: 441 IVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMI--TGDNWRSAEAISRELNLDL 498
Query: 194 TNKSYLPSQTPNGLKRLRAEELNNLQGDG 222
LP Q +K+L+A+E+ GDG
Sbjct: 499 VIAEVLPHQKSEEVKKLQAKEVVAFVGDG 527
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 137 IPASFGDVGAILVESDQLTEMY---LQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFF 193
I A G V I+ SD L E +Q++ G+ G + T D+W + + ++ +
Sbjct: 147 IVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMI--TGDNWRSAEAISRELNLDL 204
Query: 194 TNKSYLPSQTPNGLKRLRAEELNNLQGDG 222
LP Q +K+L+A+E+ GDG
Sbjct: 205 VIAEVLPHQKSEEVKKLQAKEVVAFVGDG 233
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
Length = 573
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 26/179 (14%)
Query: 372 VFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAI 431
+F + +R + W + FG + L G NP ++ +LP + PP
Sbjct: 117 IFWSGQSKLAERVRDSWKEDALFGYQFLNGTNPMLLRHSVELPARLKF------PPGMEE 170
Query: 432 TTELIEQEIGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFF--LN 489
+E+E+ G LF D+ +LL + K I S Y + L L
Sbjct: 171 LQAQLEKELQG----------GTLFEADF--SLLDGI-KANVILSSQQYLAVPLVMLKLQ 217
Query: 490 PDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISH 548
PDG L P+ I+L + P +G P +F P+ +W LAK D H+L SH
Sbjct: 218 PDGKLLPMVIQL-QLPREGSPL-PPLFLPTDPPM---VWLLAKCWVRSSDFQLHELHSH 271
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 136 KIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTN 195
K+ A D L + + + +Q++ G+ G + T D+W + + ++ +
Sbjct: 8 KVTAVIFDKTGTLTKLKESAKPAVQELKRXGIKVGXI--TGDNWRSAEAISRELNLDLVI 65
Query: 196 KSYLPSQTPNGLKRLRAEELNNLQGDG 222
LP Q +K+L+A+E+ GDG
Sbjct: 66 AEVLPHQKSEEVKKLQAKEVVAFVGDG 92
>pdb|3L3B|A Chain A, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
pdb|3L3B|B Chain B, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
Length = 242
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 24/160 (15%)
Query: 181 QPKIVDKQK-------RIFFTNKSYLPSQTPNGLKRLRAEELNNLQG-DGQGERKRHERI 232
Q ++VD +K R + + + ++++R EE + L G G K +
Sbjct: 67 QKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNL 126
Query: 233 YDYDVYNDLALPEIKELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSVSIYVPRDEA 292
+D D ND LPE K R ++ P C + PA V + + +D A
Sbjct: 127 FDEDKENDYILPEFKNAVREFYNAKK-PIGAVCIS--------PA-----VVVALLKDIA 172
Query: 293 FADIKLGQFSASSL--YSGLHALVPFLEAILIDKDLGFSS 330
+ +G+ S + G+H P ++++ D + FS
Sbjct: 173 KVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSC 212
>pdb|3N9T|A Chain A, Cryatal Structure Of Hydroxyquinol 1,2-Dioxygenase From
Pseudomonas Putida Dll-E4
Length = 290
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 497 LAIELTRP-----PLDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISH 548
AI+ T P P DG P + + +RH+ W A HF++ GY +L++H
Sbjct: 184 FAIQTTVPVCYPIPTDG-PVGEMLDAANRHA-----WRPAHLHFMIQAPGYRKLVTH 234
>pdb|1PQ3|A Chain A, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|B Chain B, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|C Chain C, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|D Chain D, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|E Chain E, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
pdb|1PQ3|F Chain F, Human Arginase Ii: Crystal Structure And Physiological
Role In Male And Female Sexual Arousal
Length = 306
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 268 GRPKSFADPASESRSVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLG 327
G+P SF R + VP+ F+ IK SAS +Y GL + P IL + D+
Sbjct: 138 GQPVSFL-----LRELQDKVPQLPGFSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQ 192
Query: 328 FSSLSDIDKV 337
+ S+ DID++
Sbjct: 193 YFSMRDIDRL 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,910,682
Number of Sequences: 62578
Number of extensions: 803145
Number of successful extensions: 1740
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 49
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)