Query 008591
Match_columns 560
No_of_seqs 266 out of 615
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 14:05:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 7E-159 2E-163 1324.5 42.8 488 67-559 81-587 (918)
2 PLN02264 lipoxygenase 100.0 2E-157 3E-162 1314.1 41.6 487 68-560 85-590 (919)
3 PLN02337 lipoxygenase 100.0 3E-155 7E-160 1298.8 42.6 487 68-559 19-533 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 9E-111 2E-115 935.6 11.6 349 204-559 1-353 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 2.7E-37 5.8E-42 285.1 13.6 123 68-195 1-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.3 2.9E-11 6.4E-16 105.7 12.6 83 92-182 20-104 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.9 4E-09 8.7E-14 92.4 8.5 64 128-193 46-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.7 8.9E-08 1.9E-12 85.1 8.8 63 131-193 50-116 (116)
9 cd02899 PLAT_SR Scavenger rece 98.6 2.8E-07 6.1E-12 82.8 9.0 78 92-183 20-99 (109)
10 cd01753 PLAT_LOX PLAT domain o 98.2 1.1E-05 2.4E-10 72.7 9.4 83 92-184 20-106 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 98.1 4.1E-05 8.9E-10 69.3 11.4 93 92-193 20-118 (120)
12 cd01752 PLAT_polycystin PLAT/L 97.9 6.9E-05 1.5E-09 67.9 9.9 86 92-185 20-109 (120)
13 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.8 6.4E-05 1.4E-09 68.3 7.5 47 139-185 50-100 (114)
14 cd01754 PLAT_plant_stress PLAT 97.8 0.00019 4.1E-09 66.5 10.7 57 127-185 56-119 (129)
15 cd01755 PLAT_lipase PLAT/ LH2 48.5 1E+02 0.0022 28.1 8.1 50 129-178 46-105 (120)
16 KOG2080 Uncharacterized conser 29.6 25 0.00055 42.0 1.2 49 135-184 1017-1069(1295)
17 COG3101 Uncharacterized protei 28.2 27 0.00058 33.6 0.9 38 506-551 27-64 (180)
18 TIGR03124 ctirate_citX holo-AC 23.8 69 0.0015 31.2 2.8 49 202-266 86-134 (165)
19 PF11248 DUF3046: Protein of u 21.2 37 0.00081 28.2 0.4 23 430-453 21-43 (63)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=7.4e-159 Score=1324.52 Aligned_cols=488 Identities=44% Similarity=0.810 Sum_probs=459.6
Q ss_pred ceeEEEEEEEeeccCCc--------c-ccccccc-cEEEEEEecccCCCCCC---CccccccccccCCCCCCCCceEEEE
Q 008591 67 STKVKAVITVKPIIPDP--------L-ALSSLVG-ALGLELVSAELDPKTGE---EKPTIKGLALGVLGKDDDGNIKYKA 133 (560)
Q Consensus 67 ~~~~~~~~~~~~~~~~~--------~-~~~~~~g-~v~lqLvS~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~y~~ 133 (560)
+.+|||+|+||++++++ + +++|++| +|+|||||+++|++||+ ++++|++|+++....+ ++++|+|
T Consensus 81 ~~~i~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~~~~~~--~~~~~~~ 158 (918)
T PLN02305 81 GIDVRAVITIRKKIKEKITEKFEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPKPSNDP--HIVEYAA 158 (918)
T ss_pred CCeEEEEEEEEeecccchhhcccchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccCCCCCC--CceEEEE
Confidence 47999999999999874 3 6899999 99999999999999984 4689999998643213 6789999
Q ss_pred EEeccCCCCCeEEEEEEeCCCCceeeeeEEEeeCCCCcEEEeecccccCCCCCccceEEeeccccccCCCChHhHHHHHH
Q 008591 134 ELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAE 213 (560)
Q Consensus 134 ~f~~~~~fG~pgai~v~n~h~~e~fl~~i~l~~~p~g~i~FpCnsWV~~~~~~~~~Riff~nk~yLP~~tp~~L~~~Re~ 213 (560)
+|+||++||+||||+|+|.|++||||++|+|+++|+|+|||+||||||+.++|+.+||||+||+|||++||++|++|||+
T Consensus 159 ~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~Re~ 238 (918)
T PLN02305 159 DFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRRE 238 (918)
T ss_pred EEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCcccccCeEEeccccCCCCCCccc-cccCccCCCCCCCCCcccCCCCCCCCCCCCCCCccC---CCccCC
Q 008591 214 ELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSV---SIYVPR 289 (560)
Q Consensus 214 EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~-~~~RPvLGg~~~PYPRR~RTGR~~~~~dp~~esr~~---~~yvPr 289 (560)
||++|||||+||||+||||||||||||||+||++ +++||||||++||||||||||||||++||.+|+|.. .|||||
T Consensus 239 eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPr 318 (918)
T PLN02305 239 DLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPR 318 (918)
T ss_pred HHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCC
Confidence 9999999999999999999999999999999999 999999999669999999999999999999999954 479999
Q ss_pred CCccccccccccccchhhhhhhhhhhHHHHHhhcCCCCCCCHHHHHHHhhcCCCCCCCCCCcchhhh-hhH-HHHHHhhc
Q 008591 290 DEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQK-ILP-ILFKTVSN 367 (560)
Q Consensus 290 DE~Fs~~K~~dF~~~~lk~~~~~~ip~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~-~~p-~~~~~i~~ 367 (560)
||+|+++|++||.++++|+++|+++|.|+++++.++.+|+||+||++||++|++|| ... .+.+++ .+| +++++|.+
T Consensus 319 DE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~-~~~-~~~~~~~p~~~~~~~~i~~ 396 (918)
T PLN02305 319 DETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLK-TEE-PKDIGLNPFLGNFMKQVLS 396 (918)
T ss_pred CCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCC-chh-hhhhhcCCchHHHHHHhhh
Confidence 99999999999999999999999999999999989999999999999999999998 310 023333 233 89999987
Q ss_pred cCccccccCCccccccccccccccHHHHHHHhhCCCccceeecccCCCCCCCCCCccCCCCCCCCHHHHHHHhCCcccHH
Q 008591 368 TGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVN 447 (560)
Q Consensus 368 ~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s~It~e~ie~~l~g~~tl~ 447 (560)
+++.+||||+|+||++|+++|++|+|||||||||+||++|+||++||++|+|||++||+|+|+||+|||+..|+| +||+
T Consensus 397 ~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~Tle 475 (918)
T PLN02305 397 VSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-MTVE 475 (918)
T ss_pred cccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-CcHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHhCCcEEEEecccccCccccccccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCCCCCceEEeCCCCCCCChH
Q 008591 448 EAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWL 527 (560)
Q Consensus 448 eal~~grLFilDy~d~~lp~l~~in~~~g~~~yAprtLffl~~dG~L~PlAIqL~~p~~~~~p~~~~VftP~d~~~~~~~ 527 (560)
|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||++++++.|.
T Consensus 476 eAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w~ 555 (918)
T PLN02305 476 KAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHWI 555 (918)
T ss_pred HHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999998888888999999877788999
Q ss_pred HHHHHHHHHhcccchhHHHHHhhhhccccccC
Q 008591 528 WTLAKAHFLVHDTGYHQLISHCQPETQCNASN 559 (560)
Q Consensus 528 W~LAKa~v~~aD~~~HQlisH~l~THlv~E~~ 559 (560)
|+||||||++||++|||+|+|||+||||||||
T Consensus 556 W~LAK~~V~~aD~~~HQlisHlLrTHlv~Epf 587 (918)
T PLN02305 556 WKLAKAHVCSNDAGVHQLVNHWLRTHACMEPY 587 (918)
T ss_pred HHHHHHHHHhccHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999997
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.5e-157 Score=1314.13 Aligned_cols=487 Identities=42% Similarity=0.787 Sum_probs=457.2
Q ss_pred eeEEEEEEEeeccCCc--------c-ccccccc-cEEEEEEecccCCCCCCC----ccccccccccCCCCCCCCceEEEE
Q 008591 68 TKVKAVITVKPIIPDP--------L-ALSSLVG-ALGLELVSAELDPKTGEE----KPTIKGLALGVLGKDDDGNIKYKA 133 (560)
Q Consensus 68 ~~~~~~~~~~~~~~~~--------~-~~~~~~g-~v~lqLvS~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~y~~ 133 (560)
++|||+|+||++++++ + +++|++| +|+|||||+++||+||++ +++|++|+++....+ ++++|+|
T Consensus 85 ~~i~~~v~~~~~~~~~~~~~~~~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~~~~~~--~~~~y~~ 162 (919)
T PLN02264 85 FKVRAVVTVRNKNKEDLKETLVKHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKKSNIKA--ERVHYTA 162 (919)
T ss_pred EEEEEEEEEEeccccchhhcccchhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccCCCCCC--CceEEEE
Confidence 7899999999998874 3 6899999 999999999999999832 699999998644344 6789999
Q ss_pred EEeccCCCCCeEEEEEEeCCCCceeeeeEEEeeCCCCcEEEeecccccCCCCCccceEEeeccccccCCCChHhHHHHHH
Q 008591 134 ELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPNGPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKRLRAE 213 (560)
Q Consensus 134 ~f~~~~~fG~pgai~v~n~h~~e~fl~~i~l~~~p~g~i~FpCnsWV~~~~~~~~~Riff~nk~yLP~~tp~~L~~~Re~ 213 (560)
+|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+||||||+.++++++||||+||+|||++||++|++|||+
T Consensus 163 ~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~~~Re~ 242 (919)
T PLN02264 163 EFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRALREK 242 (919)
T ss_pred EEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCcccccCeEEeccccCCCCCCccc-cccCccCCCCCCCCCcccCCCCCCCCCCCCCCCccC---CCccCC
Q 008591 214 ELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGGEEHPYPRRCRTGRPKSFADPASESRSV---SIYVPR 289 (560)
Q Consensus 214 EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~-~~~RPvLGg~~~PYPRR~RTGR~~~~~dp~~esr~~---~~yvPr 289 (560)
||++|||||+||||+||||||||||||||+||++ +++||||||++||||||||||||||++||.+|+|.. .|||||
T Consensus 243 eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~~~iYvPr 322 (919)
T PLN02264 243 ELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLPMYVPR 322 (919)
T ss_pred HHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCCCceeCCC
Confidence 9999999999999999999999999999999999 999999999669999999999999999999999954 479999
Q ss_pred CCccccccccccccchhhhhhhhhhhHHHHHhhcCCCCCCCHHHHHHHhhcCCCCCCCCCCcchhhhh-hHHHHHHhhcc
Q 008591 290 DEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKI-LPILFKTVSNT 368 (560)
Q Consensus 290 DE~Fs~~K~~dF~~~~lk~~~~~~ip~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~-~p~~~~~i~~~ 368 (560)
||+|+++|+++|.++++||++|+++|.|+++++.+ +|+||+||++||++|+++| .....+.++++ +|+++++|.+.
T Consensus 323 DE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~-~~~~~~~~~~~p~~~~~~~~~~~ 399 (919)
T PLN02264 323 DEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLK-LGFQDDIFKKFPLPKVVTTLQES 399 (919)
T ss_pred CCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCC-cchhhhHhhcCChHHHHHHhhhc
Confidence 99999999999999999999999999999998855 9999999999999999998 32112234442 44899999777
Q ss_pred CccccccCCccccccccccccccHHHHHHHhhCCCccceeecccCCCCCCCCCCccCCCCCCCCHHHHHHHhCCcccHHH
Q 008591 369 GKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIGGLMTVNE 448 (560)
Q Consensus 369 ~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s~It~e~ie~~l~g~~tl~e 448 (560)
++.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||+.||+++|+||++||++.|+| +||+|
T Consensus 400 ~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G-~Tl~e 478 (919)
T PLN02264 400 SEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDG-LSVQQ 478 (919)
T ss_pred ccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCC-CcHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHhCCcEEEEecccccCccccccccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCCCCCceEEeCCCCCCCChHH
Q 008591 449 AIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPSRHSTDSWLW 528 (560)
Q Consensus 449 al~~grLFilDy~d~~lp~l~~in~~~g~~~yAprtLffl~~dG~L~PlAIqL~~p~~~~~p~~~~VftP~d~~~~~~~W 528 (560)
||++|||||+||||++|||++++|.++|+++|||+||||++++|+|+||||||+++++++++++++||||+++++++|.|
T Consensus 479 Al~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~~w~W 558 (919)
T PLN02264 479 ALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNWMW 558 (919)
T ss_pred HHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999987777789999997777789999
Q ss_pred HHHHHHHHhcccchhHHHHHhhhhccccccCC
Q 008591 529 TLAKAHFLVHDTGYHQLISHCQPETQCNASNQ 560 (560)
Q Consensus 529 ~LAKa~v~~aD~~~HQlisH~l~THlv~E~~~ 560 (560)
+||||||++||++|||+|+||++||||||||.
T Consensus 559 ~LAK~~V~~aD~~~HQlisHllrTHlv~Epfi 590 (919)
T PLN02264 559 QLAKAHVCSNDAGVHQLVNHWLRTHACLEPFI 590 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Confidence 99999999999999999999999999999973
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=3.1e-155 Score=1298.84 Aligned_cols=487 Identities=40% Similarity=0.696 Sum_probs=453.2
Q ss_pred eeEEEEEEEeeccCCc--------c-ccccccc-cEEEEEEecccCC-CCCC----C-ccccccccccCCC-CCCCCceE
Q 008591 68 TKVKAVITVKPIIPDP--------L-ALSSLVG-ALGLELVSAELDP-KTGE----E-KPTIKGLALGVLG-KDDDGNIK 130 (560)
Q Consensus 68 ~~~~~~~~~~~~~~~~--------~-~~~~~~g-~v~lqLvS~~~~~-~~g~----~-~~~~~~~~~~~~~-~~~~~~~~ 130 (560)
.+|||+|+||++++++ + +++|++| +|+|||||+++++ +||+ + +++|++|+++... .+ ++++
T Consensus 19 ~~~~~~v~l~~k~~ld~~~~~~~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~~~~~~--~~~~ 96 (866)
T PLN02337 19 EKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTITSLTA--GESA 96 (866)
T ss_pred ceEEEEEEEEEecccchhhcccchhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCCCCCCC--CceE
Confidence 4899999999999874 3 6899999 9999999999985 7872 2 6999999986332 34 6789
Q ss_pred EEEEEeccCCCCCeEEEEEEeCCCCceeeeeEEEeeCCC-CcEEEeecccccCCCCCccceEEeeccccccCCCChHhHH
Q 008591 131 YKAELKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIVDKQKRIFFTNKSYLPSQTPNGLKR 209 (560)
Q Consensus 131 y~~~f~~~~~fG~pgai~v~n~h~~e~fl~~i~l~~~p~-g~i~FpCnsWV~~~~~~~~~Riff~nk~yLP~~tp~~L~~ 209 (560)
|+|+|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+||||||+.++++++||||+||+|||++||++|++
T Consensus 97 y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~~tP~~l~~ 176 (866)
T PLN02337 97 FKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPSQTPAPLRP 176 (866)
T ss_pred EEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCcccccHHHHH
Confidence 999999999999999999999999999999999999997 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcccccCeEEeccccCCCCCCccc-cccCccCCC-CCCCCCcccCCCCCCCCCCCCCCCccC----
Q 008591 210 LRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGG-EEHPYPRRCRTGRPKSFADPASESRSV---- 283 (560)
Q Consensus 210 ~Re~EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~-~~~RPvLGg-~~~PYPRR~RTGR~~~~~dp~~esr~~---- 283 (560)
|||+||++|||||+||||+||||||||||||||+||++ +++|||||| ++||||||||||||||++||.+|+|..
T Consensus 177 ~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~~esr~~~~~~ 256 (866)
T PLN02337 177 YREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSESRLPLLSL 256 (866)
T ss_pred HHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCccccccccCCC
Confidence 99999999999999999999999999999999999999 999999999 789999999999999999999999953
Q ss_pred CCccCCCCccccccccccccchhhhhhhhhhhHHHHHhhcCCCCCCCHHHHHHHhhcCCCCCCCCCCcchhhhhhH-HHH
Q 008591 284 SIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILP-ILF 362 (560)
Q Consensus 284 ~~yvPrDE~Fs~~K~~dF~~~~lk~~~~~~ip~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~~p-~~~ 362 (560)
.|||||||+|+++|++||.++++||++|+++|.|+++++.+..+|++|+||++||++|+++| ..+..+.+++.+| +++
T Consensus 257 ~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp-~~~~~~~~~~~~p~~~~ 335 (866)
T PLN02337 257 NIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLP-NGPLLEELRKNIPLEML 335 (866)
T ss_pred CcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCC-CchHHHHhhhcChHHHH
Confidence 47999999999999999999999999999999999999989999999999999999999998 3322245666677 888
Q ss_pred HHhh-ccCccccccCCccccccccccccccHHHHHHHhhCCCccceeecccCCCCCCCCCCccCCCCCCCCHHHHHHHhC
Q 008591 363 KTVS-NTGKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQEIG 441 (560)
Q Consensus 363 ~~i~-~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s~It~e~ie~~l~ 441 (560)
++|. ++++.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+|+|+||++||++.|+
T Consensus 336 ~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s~iT~e~v~~~L~ 415 (866)
T PLN02337 336 KELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNSSITEEHIEKNLE 415 (866)
T ss_pred HHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccCccCHHHHHhccC
Confidence 8884 556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhCCcEEEEecccccCccccccccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCC--CCCceEEeCC
Q 008591 442 GLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGK--PQWKQVFTPS 519 (560)
Q Consensus 442 g~~tl~eal~~grLFilDy~d~~lp~l~~in~~~g~~~yAprtLffl~~dG~L~PlAIqL~~p~~~~~--p~~~~VftP~ 519 (560)
| +||+|||++|||||+||||.+|||+.++|...+ +.|||+||||++++|+|+||||||++|+.++. +++++||||+
T Consensus 416 g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~-k~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~~~g~~~~VfTP~ 493 (866)
T PLN02337 416 G-LTVQEALEKNRLFILDHHDALMPYLRRINSTST-KTYATRTLLFLKDDGTLKPLAIELSLPHPQGDKFGAVSKVYTPA 493 (866)
T ss_pred C-ccHHHHHHcCCEEEEecchhcCcccccccCCCC-ccccceeEEEECCCCCEeEEEEEeccCCCCcccCCCCCCeECCC
Confidence 8 999999999999999999999999999998655 49999999999999999999999998875432 3578899999
Q ss_pred CCCCCChHHHHHHHHHHhcccchhHHHHHhhhhccccccC
Q 008591 520 RHSTDSWLWTLAKAHFLVHDTGYHQLISHCQPETQCNASN 559 (560)
Q Consensus 520 d~~~~~~~W~LAKa~v~~aD~~~HQlisH~l~THlv~E~~ 559 (560)
++++++|.|+||||||++||++|||+|+||++|||||||+
T Consensus 494 ~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~Epf 533 (866)
T PLN02337 494 EDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPF 533 (866)
T ss_pred CCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHH
Confidence 8777899999999999999999999999999999999997
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=8.9e-111 Score=935.63 Aligned_cols=349 Identities=54% Similarity=0.956 Sum_probs=289.5
Q ss_pred ChHhHHHHHHHHHhhcCCCCCcccccCeEEeccccCCCCCCccc-cccCccCCC-CCCCCCcccCCCCCCCCCCCCCCCc
Q 008591 204 PNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIK-ELARPVLGG-EEHPYPRRCRTGRPKSFADPASESR 281 (560)
Q Consensus 204 p~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~-~~~RPvLGg-~~~PYPRR~RTGR~~~~~dp~~esr 281 (560)
|++|+++|++||++|||||+||||+||||||||||||||+||++ +++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 78999999999999999999999999999999999999999999 999999999 8999999999999999999999999
Q ss_pred cCCCccCCCCccccccccccccchhhhhhhhhhhHHHHHhhcCCCCCCCHHHHHHHhhcCCCCCCCCCCcchhhhhhH-H
Q 008591 282 SVSIYVPRDEAFADIKLGQFSASSLYSGLHALVPFLEAILIDKDLGFSSLSDIDKVFNEGIELPPELKDQPLWQKILP-I 360 (560)
Q Consensus 282 ~~~~yvPrDE~Fs~~K~~dF~~~~lk~~~~~~ip~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~~p-~ 360 (560)
...+||||||+|++.|+++|.++++||++|.++|.|++++..+..+|+||+||++||++|+++| . +.++..+| +
T Consensus 81 ~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~-~----~~~~~~~~~~ 155 (667)
T PF00305_consen 81 SGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLP-T----DLLKKLIPLE 155 (667)
T ss_dssp -SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE---H----HHHCCHTTST
T ss_pred cccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccch-h----hHhhhcCcHH
Confidence 8899999999999999999999999999999999999998888999999999999999999887 1 23444455 5
Q ss_pred HHHHhhcc-CccccccCCccccccccccccccHHHHHHHhhCCCccceeecccCCCCCCCCCCccCCCCCCCCHHHHHHH
Q 008591 361 LFKTVSNT-GKEVFRFDTPETVDRDKFFWIRNEEFGRETLAGLNPYSIKLLSQLPLKSTLDPEIYGPPESAITTELIEQE 439 (560)
Q Consensus 361 ~~~~i~~~-~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s~It~e~ie~~ 439 (560)
+++++..+ ++.++|||+|+|+++++++|++|+|||||+|||+||++|+||+++|++|+|||++||+++++||++||+..
T Consensus 156 ~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~~~ 235 (667)
T PF00305_consen 156 LLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIEPQ 235 (667)
T ss_dssp TCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHHHH
T ss_pred HHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhhhc
Confidence 66666654 58899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcccHHHHHhCCcEEEEecccccCccccccccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCCCCCceEEeCC
Q 008591 440 IGGLMTVNEAIKQKKLFIIDYHDALLPYVGKLRQIEGSTLYGSRALFFLNPDGTLRPLAIELTRPPLDGKPQWKQVFTPS 519 (560)
Q Consensus 440 l~g~~tl~eal~~grLFilDy~d~~lp~l~~in~~~g~~~yAprtLffl~~dG~L~PlAIqL~~p~~~~~p~~~~VftP~ 519 (560)
|+| +||++||++|||||+||||+++|+++++|. .+++.|||+||||++++|+|+||||||++|+..+.+++++||||+
T Consensus 236 l~g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP~ 313 (667)
T PF00305_consen 236 LEG-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTPS 313 (667)
T ss_dssp CHC-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-TT
T ss_pred cCC-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeecC
Confidence 999 999999999999999999999999999998 789999999999999999999999999988765556688999999
Q ss_pred CCCCCChHHHHHHHHHHhcccchhHHHHHhhhhccccccC
Q 008591 520 RHSTDSWLWTLAKAHFLVHDTGYHQLISHCQPETQCNASN 559 (560)
Q Consensus 520 d~~~~~~~W~LAKa~v~~aD~~~HQlisH~l~THlv~E~~ 559 (560)
++++.+|.|+||||||++||++|||+|+||++||+|||||
T Consensus 314 ~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~ 353 (667)
T PF00305_consen 314 DDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPF 353 (667)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHH
Confidence 6655678999999999999999999999999999999986
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=2.7e-37 Score=285.12 Aligned_cols=123 Identities=44% Similarity=0.748 Sum_probs=112.3
Q ss_pred eeEEEEEEEeeccCCc-------c-ccccccc-cEEEEEEecccCCCCCCC----ccccccccccCCCCCCCCceEEEEE
Q 008591 68 TKVKAVITVKPIIPDP-------L-ALSSLVG-ALGLELVSAELDPKTGEE----KPTIKGLALGVLGKDDDGNIKYKAE 134 (560)
Q Consensus 68 ~~~~~~~~~~~~~~~~-------~-~~~~~~g-~v~lqLvS~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~y~~~ 134 (560)
++|||+|+||++++++ + ++.|++| +|+|||||+++||+||++ ++++++|.++. + ++++|+++
T Consensus 1 ~~vka~V~v~~k~~~~~~~~~~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~---~--~e~~y~~~ 75 (137)
T cd01751 1 VKVKATVTVMKKNKLDLNDDGSGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL---A--GESAYEAE 75 (137)
T ss_pred CEEEEEEEEEEeeccccccccchhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC---C--cceEEEEE
Confidence 3799999999998774 2 6889999 999999999999999854 58999998653 3 57799999
Q ss_pred EeccCCCCCeEEEEEEeCCCCceeeeeEEEeeCCC-CcEEEeecccccCCCCCccceEEeec
Q 008591 135 LKIPASFGDVGAILVESDQLTEMYLQDIVLDGLPN-GPVNLTCDSWIQPKIVDKQKRIFFTN 195 (560)
Q Consensus 135 f~~~~~fG~pgai~v~n~h~~e~fl~~i~l~~~p~-g~i~FpCnsWV~~~~~~~~~Riff~n 195 (560)
|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||.++|+.+||||+|
T Consensus 76 F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 76 FEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred EEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 99999999999999999999999999999999997 89999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.31 E-value=2.9e-11 Score=105.68 Aligned_cols=83 Identities=27% Similarity=0.532 Sum_probs=63.4
Q ss_pred cEEEEEEecccCCCCCCCccccccccccCCCCCCCCceEEEEEEeccCCCCCeEEEEEEeCC-CCceeeeeEEEeeCCCC
Q 008591 92 ALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQ-LTEMYLQDIVLDGLPNG 170 (560)
Q Consensus 92 ~v~lqLvS~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~h-~~e~fl~~i~l~~~p~g 170 (560)
+|.|+|++++.+..... ...++.|. .. ....|+..|.++.++|++++|.|+|++ +.+|||+.|+|++.++|
T Consensus 20 ~V~l~L~g~~~~s~~~~-~~~~~~~~----f~---~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~~ 91 (105)
T smart00308 20 SVSLSLVGAEGDGKESK-LDYLFKGI----FA---RGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPTG 91 (105)
T ss_pred eEEEEEEeCCCCCccee-ccccCCcc----cc---CCceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCCC
Confidence 79999999886522111 23344442 11 123566668899999999999999999 89999999999987766
Q ss_pred -cEEEeecccccC
Q 008591 171 -PVNLTCDSWIQP 182 (560)
Q Consensus 171 -~i~FpCnsWV~~ 182 (560)
.++|+||+||++
T Consensus 92 ~~~~F~c~~Wl~~ 104 (105)
T smart00308 92 GKYHFPCNSWVYP 104 (105)
T ss_pred CEEEEEcCceeCC
Confidence 899999999986
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.92 E-value=4e-09 Score=92.39 Aligned_cols=64 Identities=23% Similarity=0.583 Sum_probs=56.9
Q ss_pred ceEEEEEEeccCCCCCeEEEEEEeC---CCCceeeeeEEEeeCCCC-cEEEeecccccCCCCCccceEEe
Q 008591 128 NIKYKAELKIPASFGDVGAILVESD---QLTEMYLQDIVLDGLPNG-PVNLTCDSWIQPKIVDKQKRIFF 193 (560)
Q Consensus 128 ~~~y~~~f~~~~~fG~pgai~v~n~---h~~e~fl~~i~l~~~p~g-~i~FpCnsWV~~~~~~~~~Riff 193 (560)
.++|. |..+.++|++.+|.|.++ +...|||++|+|...+.+ .+.|+||+||....+++.+|+||
T Consensus 46 ~d~F~--i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 46 TDTFT--IETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEE--EEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred eEEee--eeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 44666 666789999999999998 688999999999886777 89999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.67 E-value=8.9e-08 Score=85.06 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=53.6
Q ss_pred EEEEEeccCCCCCeEEEEEEeCCCC---ceeeeeEEEeeCCCC-cEEEeecccccCCCCCccceEEe
Q 008591 131 YKAELKIPASFGDVGAILVESDQLT---EMYLQDIVLDGLPNG-PVNLTCDSWIQPKIVDKQKRIFF 193 (560)
Q Consensus 131 y~~~f~~~~~fG~pgai~v~n~h~~---e~fl~~i~l~~~p~g-~i~FpCnsWV~~~~~~~~~Riff 193 (560)
++..|..+.++|++.+|.|++++.. +|||++|+|.+...| .++|+||+||.....++..|+|.
T Consensus 50 ~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~~ 116 (116)
T cd00113 50 DTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSLK 116 (116)
T ss_pred eEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeecC
Confidence 3334777789999999999998855 999999999887766 89999999999988888888763
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.57 E-value=2.8e-07 Score=82.83 Aligned_cols=78 Identities=14% Similarity=0.311 Sum_probs=57.2
Q ss_pred cEEEEEEecccCCCCCCCccccccccccCCCCCCCCceEEEEEEeccCCCCCeEEEEEEeCC-CCceeeeeEEEeeCCCC
Q 008591 92 ALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQ-LTEMYLQDIVLDGLPNG 170 (560)
Q Consensus 92 ~v~lqLvS~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~h-~~e~fl~~i~l~~~p~g 170 (560)
+|.|+||.++- .++. ..|.+ .-... .+++|. |. ++++|++-.|.|.|.. .+.|||+.|+|++ |+|
T Consensus 20 ~V~i~L~G~~g--~S~~--~~L~~----~F~~G--~~d~F~--v~-~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g 85 (109)
T cd02899 20 TIEITLLGSSG--RSNP--KTLSQ----GFYPG--SLKRIR--FR-AADVGDINAIILSNTALNDPWYCDYVRIKS-EDG 85 (109)
T ss_pred eEEEEEEECCC--CcCC--EEccC----ccCCC--ceEEEE--EC-ccccCceEEEEEECCCCCCCceeeEEEEEC-CCC
Confidence 79999998653 2222 22222 11112 467887 56 8999999999998877 6679999999987 877
Q ss_pred -cEEEeecccccCC
Q 008591 171 -PVNLTCDSWIQPK 183 (560)
Q Consensus 171 -~i~FpCnsWV~~~ 183 (560)
.++||||+|+...
T Consensus 86 ~~~~Fpc~rWla~~ 99 (109)
T cd02899 86 KVFAFNVKRWIGYP 99 (109)
T ss_pred CEEEEEcceeeCCc
Confidence 8889999999753
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=98.16 E-value=1.1e-05 Score=72.74 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=57.8
Q ss_pred cEEEEEEecccCCCCCCCccccccccccCCCCCCCCceEEEEEEeccCCCCCeEEEEEEeCC---CCceeeeeEEEeeCC
Q 008591 92 ALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQ---LTEMYLQDIVLDGLP 168 (560)
Q Consensus 92 ~v~lqLvS~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~h---~~e~fl~~i~l~~~p 168 (560)
+|.|+|+.++-+ ++ +..|..... .-... ..++|. +..+.++|++-.|.|+.+. ...|||+.|+|.+ +
T Consensus 20 ~V~i~l~G~~g~--S~--~~~L~~~~~-~FerG--~~d~F~--v~~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~-~ 89 (113)
T cd01753 20 YIYLTLVGTAGE--SE--KQLLDRPGY-DFERG--AVDEYK--VKVPEDLGELLLVRLRKRKYLLFDAWFCNYITVTG-P 89 (113)
T ss_pred EEEEEEEECCCc--cc--CEEcCCCCC-ccCCC--CeeEEE--EecccCCCCcEEEEEEECCCCCCCCeeecEEEEEc-C
Confidence 689999976543 22 222322111 11111 345676 6677899999999999876 6789999999986 4
Q ss_pred CC-cEEEeecccccCCC
Q 008591 169 NG-PVNLTCDSWIQPKI 184 (560)
Q Consensus 169 ~g-~i~FpCnsWV~~~~ 184 (560)
.| ..+||||+|+....
T Consensus 90 ~~~~~~F~c~rWl~~~~ 106 (113)
T cd01753 90 GGDEYHFPCYRWIEGYG 106 (113)
T ss_pred CCCEEEEEhHHeECCCC
Confidence 46 89999999998754
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=98.08 E-value=4.1e-05 Score=69.27 Aligned_cols=93 Identities=16% Similarity=0.285 Sum_probs=61.6
Q ss_pred cEEEEEEecccCCCCCCCccccccc-cccCCCCCCCCceEEEEEEeccCCCCCeEEEEEEeCC---CCceeeeeEEEeeC
Q 008591 92 ALGLELVSAELDPKTGEEKPTIKGL-ALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQ---LTEMYLQDIVLDGL 167 (560)
Q Consensus 92 ~v~lqLvS~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~h---~~e~fl~~i~l~~~ 167 (560)
.|.|+|+-+.- .++ +-.|..+ .... ... ...++|.+ .. .++|++..|.|+.+. ...|||+.|+|.+.
T Consensus 20 ~V~i~L~G~~g--~s~--~~~L~~~~~~~~-Fer-Gs~d~F~i--~~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~ 90 (120)
T cd01756 20 NVFITLYGENG--DTG--KRKLKKSNNKNK-FER-GQTDKFTV--EA-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREP 90 (120)
T ss_pred EEEEEEEeCCC--ccc--cEEccCCCcCCc-ccC-CCeEEEEE--Ee-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEEC
Confidence 68888886332 111 3344443 1111 111 13567874 44 799999999999876 46799999999875
Q ss_pred CCC-cEEEeecccccCCCCC-ccceEEe
Q 008591 168 PNG-PVNLTCDSWIQPKIVD-KQKRIFF 193 (560)
Q Consensus 168 p~g-~i~FpCnsWV~~~~~~-~~~Riff 193 (560)
..| ..+||||+|+...+.. ...|++.
T Consensus 91 ~~~~~~~F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 91 GTGDEYTFPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred CCceEEEEEeCCccCCCCCCCEEEEEEE
Confidence 556 8999999999976542 3345554
No 12
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.93 E-value=6.9e-05 Score=67.90 Aligned_cols=86 Identities=16% Similarity=0.308 Sum_probs=57.1
Q ss_pred cEEEEEEecccCCCCCCCccccccccccCCCCCCCCceEEEEEEeccCCCCCeEEEEEEeCC---CCceeeeeEEEeeCC
Q 008591 92 ALGLELVSAELDPKTGEEKPTIKGLALGVLGKDDDGNIKYKAELKIPASFGDVGAILVESDQ---LTEMYLQDIVLDGLP 168 (560)
Q Consensus 92 ~v~lqLvS~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~~fG~pgai~v~n~h---~~e~fl~~i~l~~~p 168 (560)
+|.|+|+.+.-+ ++ +..|....... ... ....+|. +..+.++|++-.|.|..+. ...|||+.|+|.+..
T Consensus 20 ~V~i~L~G~~g~--s~--~~~L~~~~~~~-F~r-G~~~~f~--i~~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~ 91 (120)
T cd01752 20 KVTITLYGAEGE--SE--PHHLRDPEKPI-FER-GSVDSFL--LTTPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQ 91 (120)
T ss_pred EEEEEEEeCCCC--cc--cEEcCCCCccc-eeC-CCeeEEE--ecCccCCCCccEEEEEECCCCCCCCeEEEEEEEEECC
Confidence 688999875532 11 22333221111 111 1234454 6667899999999998766 567999999998755
Q ss_pred CC-cEEEeecccccCCCC
Q 008591 169 NG-PVNLTCDSWIQPKIV 185 (560)
Q Consensus 169 ~g-~i~FpCnsWV~~~~~ 185 (560)
.| ...||||+|+...+.
T Consensus 92 t~~~~~F~~~rWl~~~~~ 109 (120)
T cd01752 92 TGKKWFFLCNDWLSVEEG 109 (120)
T ss_pred CCcEEEEEeCcEECCcCC
Confidence 56 889999999987654
No 13
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.80 E-value=6.4e-05 Score=68.26 Aligned_cols=47 Identities=13% Similarity=0.439 Sum_probs=41.5
Q ss_pred CCCCCeEEEEEEeCC---CCceeeeeEEEeeCCCC-cEEEeecccccCCCC
Q 008591 139 ASFGDVGAILVESDQ---LTEMYLQDIVLDGLPNG-PVNLTCDSWIQPKIV 185 (560)
Q Consensus 139 ~~fG~pgai~v~n~h---~~e~fl~~i~l~~~p~g-~i~FpCnsWV~~~~~ 185 (560)
.++|+.-.|.|+... ...|||+.|+|++.+.| .++||||+|+...+.
T Consensus 50 ~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 50 QNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred CCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 899999999998876 57799999999987777 899999999987654
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.80 E-value=0.00019 Score=66.54 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=46.0
Q ss_pred CceEEEEEEeccCCCCCeEEEEEEeCC---CCceeeeeEEEeeCCC---C-cEEEeecccccCCCC
Q 008591 127 GNIKYKAELKIPASFGDVGAILVESDQ---LTEMYLQDIVLDGLPN---G-PVNLTCDSWIQPKIV 185 (560)
Q Consensus 127 ~~~~y~~~f~~~~~fG~pgai~v~n~h---~~e~fl~~i~l~~~p~---g-~i~FpCnsWV~~~~~ 185 (560)
..+.|. +..+.++|++-.|.|+... +..|||..|+|.+... + .++||||+|+...++
T Consensus 56 ~~d~F~--v~~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 56 NLDRFS--GRGPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred CccEEE--EEeccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 356787 6667889999999998866 6679999999987543 2 799999999977654
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=48.51 E-value=1e+02 Score=28.05 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=38.7
Q ss_pred eEEEEEEeccCCCCCeEEEEEEeCCC----------CceeeeeEEEeeCCCCcEEEeecc
Q 008591 129 IKYKAELKIPASFGDVGAILVESDQL----------TEMYLQDIVLDGLPNGPVNLTCDS 178 (560)
Q Consensus 129 ~~y~~~f~~~~~fG~pgai~v~n~h~----------~e~fl~~i~l~~~p~g~i~FpCns 178 (560)
..|+.-+..+.++|..-.|.++=+.. ..||++.|+|++...+.-..-|.+
T Consensus 46 ~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 46 KTYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred CEEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 36666677889999999998876442 379999999998777766666876
No 16
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=29.65 E-value=25 Score=42.02 Aligned_cols=49 Identities=12% Similarity=0.358 Sum_probs=35.1
Q ss_pred EeccCCCCCeEEEEEEeCC---CCceeeeeEEEeeCCCC-cEEEeecccccCCC
Q 008591 135 LKIPASFGDVGAILVESDQ---LTEMYLQDIVLDGLPNG-PVNLTCDSWIQPKI 184 (560)
Q Consensus 135 f~~~~~fG~pgai~v~n~h---~~e~fl~~i~l~~~p~g-~i~FpCnsWV~~~~ 184 (560)
|+. .++|..--+.|-... ...||++.|.|..--.| ++.|||++|.-+..
T Consensus 1017 F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ge 1069 (1295)
T KOG2080|consen 1017 FDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNGE 1069 (1295)
T ss_pred Eec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCcc
Confidence 554 789998888884322 23599999877432235 99999999997754
No 17
>COG3101 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.22 E-value=27 Score=33.62 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=25.0
Q ss_pred CCCCCCCceEEeCCCCCCCChHHHHHHHHHHhcccchhHHHHHhhh
Q 008591 506 LDGKPQWKQVFTPSRHSTDSWLWTLAKAHFLVHDTGYHQLISHCQP 551 (560)
Q Consensus 506 ~~~~p~~~~VftP~d~~~~~~~W~LAKa~v~~aD~~~HQlisH~l~ 551 (560)
+++.| ||+|+|+..+...=-.|.-+.. ++.|+ |+||+-
T Consensus 27 G~DEP----iYlPAde~vpyhri~FA~GfYa---SalHE-IaHWcv 64 (180)
T COG3101 27 GDDEP----IYLPADEEVPYHRIVFAHGFYA---SALHE-ISHWCI 64 (180)
T ss_pred CCCcc----eeccCccCCCceeEEEechhHH---HHHHH-HHHHHH
Confidence 44557 9999987655444445555554 45899 899973
No 18
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=23.75 E-value=69 Score=31.21 Aligned_cols=49 Identities=31% Similarity=0.474 Sum_probs=29.7
Q ss_pred CCChHhHHHHHHHHHhhcCCCCCcccccCeEEeccccCCCCCCccccccCccCCCCCCCCCcccC
Q 008591 202 QTPNGLKRLRAEELNNLQGDGQGERKRHERIYDYDVYNDLALPEIKELARPVLGGEEHPYPRRCR 266 (560)
Q Consensus 202 ~tp~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDlG~Pd~~~~~RPvLGg~~~PYPRR~R 266 (560)
+.++.-.+..-=+|++---=| |++|.|||+.-|.+ +.|--|| +| ||||=
T Consensus 86 ~~~a~~vK~~~i~iEe~hplG--------RL~DlDV~~~~g~~----iSR~~lg---~~-~R~Cl 134 (165)
T TIGR03124 86 DAPALELKRLMIKLEESHPLG--------RLWDIDVLDADGKS----LSRTDLG---LP-PRKCL 134 (165)
T ss_pred CCCHHHHHHHHHHHHhCCchh--------hheeheeecCCCCC----cCHHHcC---CC-CCeee
Confidence 555544566666666655222 89999999644433 3354455 34 78885
No 19
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.16 E-value=37 Score=28.18 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhCCcccHHHHHhCC
Q 008591 430 AITTELIEQEIGGLMTVNEAIKQK 453 (560)
Q Consensus 430 ~It~e~ie~~l~g~~tl~eal~~g 453 (560)
.|-.+|+-..|+| .|.+|||++|
T Consensus 21 ~la~dhvL~~LGg-rT~~eAL~~G 43 (63)
T PF11248_consen 21 SLARDHVLSELGG-RTAAEALEAG 43 (63)
T ss_pred HHHHhcchhhcCC-cCHHHHHHcC
Confidence 5667888888998 9999999987
Done!