BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008592
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 158/545 (28%), Positives = 243/545 (44%), Gaps = 79/545 (14%)
Query: 38 RHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYN-VTIHWHG 96
RHYK+ ++ C ++ +NGQFPGP I A GD +++ + N + V IHWHG
Sbjct: 4 RHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHG 63
Query: 97 VRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIIL 155
+ Q + WADG A ++QC I G+++ YNFTV GT F+H H+ R A LYG +I+
Sbjct: 64 ILQRGTPWADGTASISQCAINPGETFFYNFTVD-NPGTFFYHGHLGMQRSAGLYGSLIVD 122
Query: 156 PKQQASYPFPQPFEEVPIIFGEWWKADTET----IINEAMQTGGAP-------------N 198
P Q PF E+ ++ +WW + ++ ++ G P +
Sbjct: 123 PPQGKKEPF-HYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCS 181
Query: 199 ISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVET 258
I+ + N P + + V+P KTY +R+ + L F+I NH L +VE
Sbjct: 182 IAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEA 241
Query: 259 DAVYAK---------------------SKAPNANFLIAARPYATGPASFDNTTTAGVLEY 297
D Y + + P+ N+ ++ A P NT L
Sbjct: 242 DGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHP----NTPPGLTLLN 297
Query: 298 DQPNGITTKNXXXXXXXXXXXXFNDT-NFVMQFSKKIRSLATAKFPAKVPMKVDRRFFFT 356
PN ++ F+ + NF + + + S K P+K +RR F
Sbjct: 298 YLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGS-------PKPPVKFNRRIFLL 350
Query: 357 VGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQPNVALLQAHFFNRSKGVYTTDFPANPP 416
Q N + ++N+VS P L A +N F NPP
Sbjct: 351 ------------NTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHA-----FDQNPP 393
Query: 417 ---FKFNYT-GTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSII---VAESHPLHLHGFN 469
F +Y TPP+N G V V+V++Q+ +++ ++E+HP HLHG +
Sbjct: 394 PEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHD 453
Query: 470 FFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVH 529
F+V+ G G F ++ + NL +P RNTV + GW AIRF+ADNPGVW HCH+E H
Sbjct: 454 FWVLGYGDGKFSAEEE-SSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPH 512
Query: 530 TSWGL 534
G+
Sbjct: 513 LHMGM 517
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 512 FLADNPGVWFMHCHLEVHTSWGLKMAWIVN 541
F DNPG +F H HL + S GL + IV+
Sbjct: 93 FTVDNPGTFFYHGHLGMQRSAGLYGSLIVD 122
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 138/510 (27%), Positives = 212/510 (41%), Gaps = 96/510 (18%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGPA 109
++ + VN FP P I +GDR + VI+N+ + +IHWHG Q + WADGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQP 167
+V QCPI TG +++Y+F V Q GT ++H+H+S L GPI++ P+ +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQDPHKSLYDVD 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTP 227
+ I +W+ A + G +DA INGL G + D + VT
Sbjct: 141 DDSTVITLADWYHL--------AAKVGSPVPTADATLINGL-GRSIDTLNADLAVITVTK 191
Query: 228 GKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYA------- 280
GK Y R+++ + + FSI H+LT++E D+V K + ++ + AA+ Y+
Sbjct: 192 GKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIFAAQRYSFVLNADQ 251
Query: 281 ------------TGPASFDNTTTAGVLEYDQPNGITTKNXXXXXXXXXXXXFNDTNFVMQ 328
+G +FD + +L YD G ++
Sbjct: 252 DVGNYWIRALPNSGTRNFDGGVNSAILRYD---GAAPVEPTTSQTPSTNPLVESALTTLE 308
Query: 329 FSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFV 388
+ S A P V + ++ F F G ++N SF
Sbjct: 309 GTAAPGSPA----PGGVDLALNMAFGFAGG--------------------KFTINGASFT 344
Query: 389 QPNV-ALLQAHFFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVE 447
P V LLQ +G + ++ SG+ V LP NA +E
Sbjct: 345 PPTVPVLLQI-----------------------LSGAQSAQDLLPSGS-VYSLPANADIE 380
Query: 448 VVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPS-GG 506
+ + T+ HP HLHG F VV + +N +P R+ V S G
Sbjct: 381 ISLPATAAAPGFPHPFHLHGHTFAVVRSAGS--------STYNYENPVYRDVVSTGSPGD 432
Query: 507 WVAIRFLADNPGVWFMHCHLEVHTSWGLKM 536
V IRF DNPG WF+HCH++ H G +
Sbjct: 433 NVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/513 (28%), Positives = 219/513 (42%), Gaps = 102/513 (19%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGPA 109
++ + VN FP P I +GDR + VI+N+ + +IHWHG Q + WADGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQP 167
+V QCPI TG +++Y+F V Q GT ++H+H+S L GPI++ P + +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTP 227
+ I +W+ A + G +DA INGL G A D + VT
Sbjct: 141 DDSTVITLADWYHL--------AAKVGAPVPTADATLINGL-GRSAATLAADLAVITVTK 191
Query: 228 GKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYA------- 280
GK Y R+++ + + FSI H+LT++E D+V K ++ + AA+ Y+
Sbjct: 192 GKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQ 251
Query: 281 ------------TGPASFDNTTTAGVLEYD--QPNGITTKNXXXXXXXXXXXXFNDTNFV 326
+G +F T + +L YD P TT TN +
Sbjct: 252 DVDNYWIRALPNSGTQNFAGGTNSAILRYDGAAPVEPTTSQTPS------------TNPL 299
Query: 327 MQFSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVS 386
++ S TA + P VD G G N T +N S
Sbjct: 300 VE-SALTTLKGTAAPGSPTPGGVDLALNMAFGFA-----------GGNFT-----INGAS 342
Query: 387 FVQPNV-ALLQAHFFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNAS 445
F P V LLQ +G + ++ +G+ V LP NA
Sbjct: 343 FTPPTVPVLLQI-----------------------LSGAQSAADLLPAGS-VYSLPANAD 378
Query: 446 VEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTV--GVP 503
+E+ + T+ HP HLHG + F V + G+ + +N +P R+ V G P
Sbjct: 379 IEISLPATAAAPGFPHPFHLHG-HVFAVVRSAGS-------STYNYANPVYRDVVSTGAP 430
Query: 504 SGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKM 536
G V IRF DNPG WF+HCH++ H G +
Sbjct: 431 -GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/513 (28%), Positives = 219/513 (42%), Gaps = 102/513 (19%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGPA 109
++ + VN FP P I +GDR + VI+N+ + +IHWHG Q + WADGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQP 167
+V QCPI TG +++Y+F V Q GT ++H+H+S L GPI++ P + +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTP 227
+ I +W+ A + G +DA INGL G A D + VT
Sbjct: 141 DDSTVITLADWYHL--------AAKVGAPVPTADATLINGL-GRSAATLAADLAVITVTK 191
Query: 228 GKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYA------- 280
GK Y R+++ + + FSI H+LT++E D+V K ++ + AA+ Y+
Sbjct: 192 GKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQ 251
Query: 281 ------------TGPASFDNTTTAGVLEYD--QPNGITTKNXXXXXXXXXXXXFNDTNFV 326
+G +F T + +L YD P TT TN +
Sbjct: 252 DVDNYWIRALPNSGTQNFAGGTNSAILRYDGAAPVEPTTSQTPS------------TNPL 299
Query: 327 MQFSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVS 386
++ S TA + P VD G G N T +N S
Sbjct: 300 VE-SALTTLKGTAAPGSPTPGGVDLALNMAFGFA-----------GGNFT-----INGAS 342
Query: 387 FVQPNV-ALLQAHFFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNAS 445
F P V LLQ +G + ++ +G+ V LP NA
Sbjct: 343 FTPPTVPVLLQI-----------------------LSGAQSAADLLPAGS-VYSLPANAD 378
Query: 446 VEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTV--GVP 503
+E+ + T+ HP HLHG + F V + G+ + +N +P R+ V G P
Sbjct: 379 IEISLPATAAAPGFPHPFHLHG-HVFAVVRSAGS-------STYNYANPVYRDVVSTGAP 430
Query: 504 SGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKM 536
G V IRF DNPG WF+HCH++ H G +
Sbjct: 431 -GDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAV 462
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 143/527 (27%), Positives = 218/527 (41%), Gaps = 96/527 (18%)
Query: 41 KFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVIN-----NVKYNVTIHWH 95
HI +I + V G FPGP I GD I N ++ + +IHWH
Sbjct: 8 DLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWH 67
Query: 96 GVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIII 154
G Q + WADGPA++TQCPI G S+ YNF V G GT ++H+H++ L GP ++
Sbjct: 68 GEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVV 127
Query: 155 L-PKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFY 213
P + + + I +W+ ++ + M GGA +D+ I+GL
Sbjct: 128 YDPNDPDANLYDVDDDTTIITLADWYH-----VLAKEMGAGGAIT-ADSTLIDGLGRTHV 181
Query: 214 NCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAK--------- 264
N AA + V GK Y +R+++ + + FSI H +TI+ETD V ++
Sbjct: 182 NVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQI 241
Query: 265 -----------SKAPNANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNXXXXXX 313
+ P N+ I A P + G FD + +L YD G TT +
Sbjct: 242 FAAQRYSFVLNANQPVGNYWIRANPNSGG-EGFDGGINSAILRYD---GATTADPVTVAS 297
Query: 314 XXXXXXFNDTNFVMQFSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGP 373
+T+ + L+ P P + + LG + C
Sbjct: 298 TVHTKCLIETD--------LHPLSRNGVPGN-PHQGGADCNLNLSLGFA-CGN------- 340
Query: 374 NNTKLAASVNNVSFVQPNV-ALLQAHFFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVS 432
+N VSF P V LLQ +G + ++
Sbjct: 341 ------FVINGVSFTPPTVPVLLQI-----------------------CSGANTAADLLP 371
Query: 433 SGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLV 492
SG+ V+ LP N+++E+ + + HP HLHG + F V++ N N D
Sbjct: 372 SGS-VISLPSNSTIEIALPAGA--AGGPHPFHLHGHD-FAVSESASNSTSNYD------- 420
Query: 493 DPAERNTVGVPS-GGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAW 538
DP R+ V + G V IRF DNPG WF+HCH++ H G + +
Sbjct: 421 DPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVF 467
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 144/498 (28%), Positives = 217/498 (43%), Gaps = 73/498 (14%)
Query: 56 KSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNV-----TIHWHGVRQLRSGWADGPAY 110
+ V VNG P P I +GDR + VI+ + + +IHWHG Q + WADGPA+
Sbjct: 22 REAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNWADGPAF 81
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQPF 168
V QCPI +G S++Y+F V Q GT ++H+H+S L GP ++ P + +
Sbjct: 82 VNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDIDN 141
Query: 169 EEVPIIFGEWWKADTETIINEAMQTGGA-PNISDAFTINGLPGPFYNCAAKDTFKLKVTP 227
++ I +W+ A + G P SD+ INGL G A D +KVT
Sbjct: 142 DDTVITLADWYHV--------AAKLGPRFPFGSDSTLINGL-GRTTGIAPSDLAVIKVTQ 192
Query: 228 GKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYATGPASFD 287
GK Y R+++ + + FSI NHT+TI+E D++ + ++ + AA+ Y SF
Sbjct: 193 GKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQRY-----SF- 246
Query: 288 NTTTAGVLEYDQP-NGITTKNXXXXXXXXXXXXFNDTNFVMQFSKKIRSLATAKFPAKVP 346
VL+ QP + + N + +I + P K
Sbjct: 247 ------VLDASQPVDNYWIRANPAFGNTGFAGGINSAILRYDGAPEIEPTSVQTTPTKPL 300
Query: 347 MKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAAS-----VNNVSFVQPNV-ALLQAHFF 400
+VD + + SP P P N + +N+ +FV P+V LLQ
Sbjct: 301 NEVDLHPLSPMPVPGSPEPGG--VDKPLNLVFNFNGTNFFINDHTFVPPSVPVLLQI--- 355
Query: 401 NRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAES 460
+G + +V G+ V VLP N+S+E+ T+
Sbjct: 356 --------------------LSGAQAAQDLVPEGS-VFVLPSNSSIEISFPATANAPGFP 394
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTV--GVPSGGWVAIRFLADNPG 518
HP HLHG F VV + +N +P R+ V G P G V IRF +NPG
Sbjct: 395 HPFHLHGHAFAVVRSAGSSV--------YNYDNPIFRDVVSTGQP-GDNVTIRFETNNPG 445
Query: 519 VWFMHCHLEVHTSWGLKM 536
WF+HCH++ H G +
Sbjct: 446 PWFLHCHIDFHLDAGFAV 463
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 139/521 (26%), Positives = 211/521 (40%), Gaps = 118/521 (22%)
Query: 56 KSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNV-----TIHWHGVRQLRSGWADGPAY 110
++ + VN FP P I GD + ++N + + +IHWHG Q + WADGPA+
Sbjct: 22 RAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPAF 81
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQPF 168
+ QCPI +G S++Y+F V GQ GT ++H+H+S L GP ++ P + +
Sbjct: 82 INQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANLYDVDD 141
Query: 169 EEVPIIFGEWWKADTETIINEAMQTGGA-PNISDAFTINGLPGPFYNCAAKDTFKLKVTP 227
E I +W+ A + G P +D+ INGL G + D + VT
Sbjct: 142 ESTVITLADWYHV--------AAKLGPRFPKGADSTLINGL-GRSTSTPTADLAVISVTK 192
Query: 228 GKTYLLRMINAALNDELFFSIANHTLTI------------VETDAVYAKSKAP---NAN- 271
GK Y R+++ + + FSI +H LT+ V++ ++A + NAN
Sbjct: 193 GKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLNANQ 252
Query: 272 ----FLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNXXXXXXXXXXXXFNDTNFVM 327
+ I A P G F + + +L YD + + N T +
Sbjct: 253 DVDNYWIRANP-NFGTTGFADGVNSAILRYDDADPVEPVT-------------NQTGTTL 298
Query: 328 QFSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPN-NTKLAAS----- 381
+ L + P P N T G + N +A +
Sbjct: 299 LLETDLHPLTSM-----------------------PVPGNPTQGGADLNLNMAFNFDGTN 335
Query: 382 --VNNVSFVQPNV-ALLQAHFFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVV 438
+N SF P V LLQ +G + ++ SG+ V
Sbjct: 336 FFINGESFTPPTVPVLLQI-----------------------ISGANTAQDLLPSGS-VY 371
Query: 439 VLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERN 498
LP N+S+E+ T+ HP HLHG F VV +N DP R+
Sbjct: 372 SLPSNSSIEITFPATTAAPGAPHPFHLHGHVFAVVRSAGS--------TSYNYDDPVWRD 423
Query: 499 TV--GVP-SGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKM 536
V G P +G V IRF DNPG WF+HCH++ H G +
Sbjct: 424 VVSTGTPQAGDNVTIRFQTDNPGPWFLHCHIDFHLDAGFAV 464
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 141/517 (27%), Positives = 219/517 (42%), Gaps = 90/517 (17%)
Query: 58 IVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVT-IHWHGVRQLRSGWADGPAYVTQCPI 116
++ VN + GP I A GD + + VINN+K N T +HWHG+RQL + + DG VT+CPI
Sbjct: 98 VMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTECPI 157
Query: 117 Q-TGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIIILPKQ---QASYPFPQPFEEVP 172
G Y F T Q GT ++H+H S YG ++ Q AS P+ P
Sbjct: 158 PPKGGRKTYKFRAT-QYGTSWYHSHFS----AQYGNGVVGTIQIDGPASLPYDIDLGVFP 212
Query: 173 IIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYL 232
++ +++ + +++ G P SD NG A + + +TPGK +
Sbjct: 213 LM--DYYYRSADELVHFTQSNGAPP--SDNVLFNGT-ARHPETGAGQWYNVTLTPGKRHR 267
Query: 233 LRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYATGPASFDNTTTA 292
LR+IN + ++ S+ H +T++ TD V + ++ FL + Y
Sbjct: 268 LRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDV----------- 316
Query: 293 GVLEYDQPNGITTKNXXXXXXXXXXXXFNDTNFVMQFSKKIRSLATAKFPAKVPMKVDRR 352
++ + P G + F + F + + KFPA +
Sbjct: 317 -TIDANSPVG-------------------NYWFNVTFGDGLCGSSNNKFPAAIFRYQGAP 356
Query: 353 FFFTVGLGLSPCPQNQTCQGPNNTKL---AASVNNVSFVQ-PNVALLQAHFFNRSKGVYT 408
GL P P + N T + +A VNN FV+ P+ L GV T
Sbjct: 357 ATLPTDQGL-PVPNHMCLDNLNLTPVVTRSAPVNN--FVKRPSNTL----------GV-T 402
Query: 409 TDFPANPPFKFNYTGT--------PPSNIMVSSGTKVVVLPFNASVEVVMQ--------- 451
D P F + G+ P + ++S T V V+ V Q
Sbjct: 403 LDIGGTPLFVWKVNGSAINVDWGKPILDYVMSGNTSYPVSDNIVQVDAVDQWTYWLIEND 462
Query: 452 DTSIIVAESHPLHLHGFNFFVVAQGFGN---------FDPNKDPAKFNLVDPAERNTVGV 502
T+ IV+ HP+HLHG +F V+ + FDP KD + +P R+ +
Sbjct: 463 PTNPIVSLPHPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNPVRRDVTML 522
Query: 503 PSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWI 539
P+GGW+ + F DNPG W HCH+ H S GL + ++
Sbjct: 523 PAGGWLLLAFKTDNPGAWLFHCHIAWHVSGGLSVDFL 559
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 126/238 (52%), Gaps = 20/238 (8%)
Query: 35 GITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVT-IH 93
G+TR Y ++ IT T+S +T NG PGP IIA GD L+I V NN+++N T IH
Sbjct: 65 GVTREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIH 124
Query: 94 WHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPI 152
WHG+RQL S DG VTQCPI G + Y F VT Q GT ++H+H S L+GP+
Sbjct: 125 WHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPL 183
Query: 153 IILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPF 212
II A Y E+V +IF + W ++ I + + G P + + +NG
Sbjct: 184 IINGPATADYD-----EDVGVIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGTNT-- 235
Query: 213 YNCAAK---------DTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAV 261
++C+A F+L G Y LR+IN ++ F+I NHTLT++ D V
Sbjct: 236 FDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLV 293
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVW 520
HP+HLHG +FF+VAQ F+ ++ PAKFNLV+P R+ +P G++AI F DNPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 521 FMHCHLEVHTSWGLKMAWI 539
+HCH+ H S GL M ++
Sbjct: 523 LLHCHIAWHASEGLAMQFV 541
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 126/238 (52%), Gaps = 20/238 (8%)
Query: 35 GITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVT-IH 93
G+TR Y ++ IT T+S +T NG PGP IIA GD L+I V NN+++N T IH
Sbjct: 65 GVTREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIH 124
Query: 94 WHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPI 152
WHG+RQL S DG VTQCPI G + Y F VT Q GT ++H+H S L+GP+
Sbjct: 125 WHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPL 183
Query: 153 IILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPF 212
II A Y E+V +IF + W ++ I + + G P + + +NG
Sbjct: 184 IINGPATADYD-----EDVGVIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGTNT-- 235
Query: 213 YNCAAK---------DTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAV 261
++C+A F+L G Y LR+IN ++ F+I NHTLT++ D V
Sbjct: 236 FDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLV 293
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVW 520
HP+HLHG +FF+VAQ F+ ++ PAKFNLV+P R+ +P G++AI F DNPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 521 FMHCHLEVHTSWGLKMAWI 539
+HCH+ H S G+ M ++
Sbjct: 523 LLHCHIAWHASEGMAMQFV 541
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 133/506 (26%), Positives = 218/506 (43%), Gaps = 87/506 (17%)
Query: 54 QTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-YNVTIHWHGVRQLRSGWADGPAYVT 112
+++ ++T NGQFP P I +GDR+ I + N + N ++H+HG+ Q + DG ++T
Sbjct: 20 KSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLT 79
Query: 113 QCPIQTGQSYVYNFTVTGQRGTLFWHAHIS-WLRATLYGPIIILPKQQASYPFPQPFEEV 171
QCPI G + +YNFTV GT ++H+H + G II + S+P+ EE+
Sbjct: 80 QCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFII---KDDSFPYDYD-EEL 135
Query: 172 PIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKL--KVTPGK 229
+ EW+ D T + ++ + P ++ P P N +T L +V P
Sbjct: 136 SLSLSEWYH-DLVTDLTKSFMSVYNPTGAE-------PIP-QNLIVNNTMNLTWEVQPDT 186
Query: 230 TYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYATGPASFDNT 289
TYLLR++N +F I +H +T+VE D + + + ++ A+ Y + ++T
Sbjct: 187 TYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDT 246
Query: 290 TTAGVLEYDQPNGITTK-NXXXXXXXXXXXXFNDTNFVMQFSKKIRSLATAKFPAKVPMK 348
D+ I K + N T++++ K +L T + +
Sbjct: 247 --------DKNFAIMQKFDDTMLDVIPSDLQLNATSYMVY--NKTAALPTQNYVDSIDNF 296
Query: 349 VDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASV-------------NNVSFVQPNVALL 395
+D + L P + P++ V NN+++ P V L
Sbjct: 297 LDDFY-------LQPYEKEAIYGEPDHVITVDVVMDNLKNGVNYAFFNNITYTAPKVPTL 349
Query: 396 QAHFFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVM--QDT 453
V ++ AN ++ + S T +L + VE+V+ QDT
Sbjct: 350 MT--------VLSSGDQAN------------NSEIYGSNTHTFILEKDEIVEIVLNNQDT 389
Query: 454 SIIVAESHPLHLHGFNFFVVAQ------GFG----NFDPNKDPAKFNLVDPAERNTVGVP 503
+HP HLHG F + + G +FDP+ PA P R+T+ V
Sbjct: 390 G-----THPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEY--PMRRDTLYVR 442
Query: 504 SGGWVAIRFLADNPGVWFMHCHLEVH 529
IRF ADNPGVWF HCH+E H
Sbjct: 443 PQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 140/541 (25%), Positives = 216/541 (39%), Gaps = 73/541 (13%)
Query: 15 TFLGFFALWILSELALAKHEGITRHYKFHIKMQNIT-RLCQTKSIVTVNGQFPGPRIIAR 73
+F +L +LS +L+ T HI N+ +S VT G P I
Sbjct: 3 SFASLKSLVVLSLTSLSL--AATVALDLHILNANLDPDGTGARSAVTAEGTTIAPLITGN 60
Query: 74 EGDRLLIRVIN-----NVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTV 128
DR I VI+ N++ +IHWHG Q + DGPA+V QCPI +S+VY+F V
Sbjct: 61 IDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVV 120
Query: 129 TGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQPFEEVPIIFGEWWKADTETI 186
GQ GT ++H+H+S L G ++ P + I +W+ + + +
Sbjct: 121 PGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTVITIADWYHSLSTVL 180
Query: 187 INEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFF 246
+ A D INGL N +A + V GK Y R+++ + F
Sbjct: 181 FPNPNKAPPA---PDTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAF 237
Query: 247 SIANHTLTIVETDAVYAKSKAPNANFLIAARPYATGPASFDNTTTAGVLEYDQPNG-ITT 305
SI H +T++E D V + ++ + A + Y+ V+E +Q G
Sbjct: 238 SIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSV------------VVEANQAVGNYWI 285
Query: 306 KNXXXXXXXXXXXXFNDTNFVMQFSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGLSPCP 365
+ N F Q + T++ + + G +P P
Sbjct: 286 RANPSNGRNGFTGGINSAIFRYQ-GAAVAEPTTSQNSGTALNEANLIPLINPGAPGNPVP 344
Query: 366 QNQTCQ-----GPNNTKLAASVNNVSFVQPNVALLQAHFFNRSKGVYTTDFPANPPFKFN 420
G N T ++N F+ P V +L GV
Sbjct: 345 GGADINLNLRIGRNATTADFTINGAPFIPPTVPVL----LQILSGV-------------- 386
Query: 421 YTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNF 480
T P++++ G V+ LP N +E+ SI +HP HLHG NF VV
Sbjct: 387 ---TNPNDLL--PGGAVISLPANQVIEI-----SIPGGGNHPFHLHGHNFDVV------- 429
Query: 481 DPNKDPAK--FNLVDPAERNTVGVPSGGW-VAIRFLADNPGVWFMHCHLEVHTSWGLKMA 537
+ P +N V+P R+ V + GG V RF+ DNPG WF+HCH++ H GL +
Sbjct: 430 ---RTPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVV 486
Query: 538 W 538
+
Sbjct: 487 F 487
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 125/245 (51%), Gaps = 17/245 (6%)
Query: 44 IKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVR 98
I ++T T++ V NG FPGP I +GD I VI+N+ TIHWHG+
Sbjct: 10 ISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLF 69
Query: 99 QLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-P 156
Q + WADGPA+V QCPI +G S++Y+FTV Q GT ++H+H+S L GP+++ P
Sbjct: 70 QHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDP 129
Query: 157 KQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGA-PNISDAFTINGLPGPFYNC 215
+ + + I +W+ A + G A P +D+ INGL G F
Sbjct: 130 SDPYASMYDVDDDTTVITLSDWYHT--------AAKLGPAFPPNADSVLINGL-GRFAGG 180
Query: 216 AAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIA 275
A D + V K Y R+++ + + FSI H +TI+E D V + ++ + A
Sbjct: 181 NASDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFA 240
Query: 276 ARPYA 280
++ Y+
Sbjct: 241 SQRYS 245
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 436 KVVVLPFNASVEVVMQDTSI-----IVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFN 490
V LP N+++E+ T++ HP HLHG F VV + G+ D +N
Sbjct: 370 SVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVV-RSAGSSD-------YN 421
Query: 491 LVDPAERNTVGVPS-GGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAW 538
V+P R+TV + G V IRF DN G WF+HCH++ H G + +
Sbjct: 422 YVNPVRRDTVSTGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVF 470
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 17/234 (7%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGPA 109
++ V VNG PGP I GDR + VI+N+ + +IHWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPA 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQP 167
++ QCPI +G S++Y+F V Q GT ++H+H+S L GP ++ P A+ +
Sbjct: 81 FINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVD 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGA-PNISDAFTINGLPGPFYNCAAKDTFKLKVT 226
++ I +W+ A + G A P +DA ING G + D + VT
Sbjct: 141 NDDTVITLVDWYHV--------AAKLGPAFPLGADATLING-KGRSPSTTTADLSVISVT 191
Query: 227 PGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYA 280
PGK Y R+++ + + FSI H +TI+ETD++ ++ + AA+ Y+
Sbjct: 192 PGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYS 245
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 422 TGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFD 481
+G + ++ SG+ V LP NA +E+ T+ HP HLHG F VV
Sbjct: 357 SGAQNAQDLLPSGS-VYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTV- 414
Query: 482 PNKDPAKFNLVDPAERNTV--GVPSGGW-VAIRFLADNPGVWFMHCHLEVHTSWGLKMAW 538
+N +P R+ V G P+ G V IRF DNPG WF+HCH++ H G + +
Sbjct: 415 -------YNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 17/234 (7%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGPA 109
++ V VNG PGP + GDR + VI+N+ + +IHWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQP 167
++ QCPI G S++Y+F V Q GT ++H+H+S L GP ++ P + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGA-PNISDAFTINGLPGPFYNCAAKDTFKLKVT 226
++ I +W+ A + G P +DA ING G + + + +KVT
Sbjct: 141 NDDTVITLADWYHT--------AAKLGPRFPGGADATLING-KGRAPSDSVAELSVIKVT 191
Query: 227 PGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYA 280
GK Y R+++ + N FSI H LTI+E D+V ++ ++ + AA+ Y+
Sbjct: 192 KGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYS 245
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 422 TGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFD 481
+G + ++ SG+ V VLP NAS+E+ T+ HP HLHG F VV
Sbjct: 357 SGAQTAQDLLPSGS-VYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSAGSTV- 414
Query: 482 PNKDPAKFNLVDPAERNTV--GVPSGGW-VAIRFLADNPGVWFMHCHLEVHTSWGLKM 536
+N +P R+ V G P+ G V IRF +NPG WF+HCH++ H G +
Sbjct: 415 -------YNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 17/234 (7%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGPA 109
++ V VNG PGP + GDR + VI+N+ + +IHWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQP 167
++ QCPI G S++Y+F V Q GT ++H+H+S L GP ++ P + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGA-PNISDAFTINGLPGPFYNCAAKDTFKLKVT 226
++ I +W+ A + G P +DA ING G + + + +KVT
Sbjct: 141 NDDTVITLADWYHT--------AAKLGPRFPGGADATLING-KGRAPSDSVAELSVIKVT 191
Query: 227 PGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYA 280
GK Y R+++ + N FSI H LTI+E D+V ++ ++ + AA+ Y+
Sbjct: 192 KGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYS 245
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 422 TGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFD 481
+G + ++ SG+ V VLP NAS+E+ T+ HP HLHG F VV
Sbjct: 357 SGAQTAQDLLPSGS-VYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSAGSTV- 414
Query: 482 PNKDPAKFNLVDPAERNTV--GVPSGGW-VAIRFLADNPGVWFMHCHLEVHTSWGLKM 536
+N +P R+ V G P+ G V IRF +NPG WF+HCH++ H G +
Sbjct: 415 -------YNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 17/234 (7%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNV-----TIHWHGVRQLRSGWADGPA 109
++ V VNG PGP + GDR + VI+N+ + ++HWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQP 167
++ QCPI G S++Y+F V Q GT ++H+H+S L GP ++ P + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGA-PNISDAFTINGLPGPFYNCAAKDTFKLKVT 226
++ I +W+ A + G A PN +D+ ING + +A+ + + VT
Sbjct: 141 NDDTTITLADWYHT--------AAKLGPAFPNGADSTLINGKGRAPSDSSAQLSV-VSVT 191
Query: 227 PGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYA 280
GK R+++ + + FSI H TI+ETD+V ++ ++ + AA+ Y+
Sbjct: 192 KGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYS 245
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 422 TGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFD 481
+G + ++ SG+ V LP NAS+E+ T+ HP HLHG F VV
Sbjct: 357 SGAQTAQDLLPSGS-VXTLPSNASIEISFPATAAAPGAPHPFHLHGHVFAVVRSAGSTV- 414
Query: 482 PNKDPAKFNLVDPAERNTV--GVPSGGW-VAIRFLADNPGVWFMHCHLEVHTSWGLKM 536
+N +P R+ V G P+ G V IRFL +NPG WF+HCH++ H G +
Sbjct: 415 -------YNYSNPIFRDVVSTGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 15/232 (6%)
Query: 56 KSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGPAY 110
+ + VNG FP P I ++GDR + V++ + + +IHWHG Q + WADGPA+
Sbjct: 22 RDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAF 81
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQPF 168
V QCPI +G S++Y+F V Q GT ++H+H+S L GP ++ PK + +
Sbjct: 82 VNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYDVDN 141
Query: 169 EEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPG 228
E I +W+ T + G +DA INGL G + + V G
Sbjct: 142 ESTVITLTDWYH--TAARLGPRFPLG-----ADATLINGL-GRSASTPTAALAVINVQHG 193
Query: 229 KTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYA 280
K Y R+++ + + FSI H LT++E D + ++ ++ + AA+ Y+
Sbjct: 194 KRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYS 245
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 436 KVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPA 495
V LP ++++E+ + T++ HP HLHG F VV + +N DP
Sbjct: 370 SVYPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVR--------SAGSTTYNYNDPI 421
Query: 496 ERNTV--GVPSGGW-VAIRFLADNPGVWFMHCHLEVHTSWGLKMAW 538
R+ V G P+ G V IRF DNPG WF+HCH++ H G + +
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVF 467
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 15/233 (6%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNV-----TIHWHGVRQLRSGWADGPA 109
++ V VNG PGP + GDR + VI+N+ + ++HWHG Q + WADGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIIL-PKQQASYPFPQP 167
++ QCPI G S++Y+F V Q GT ++H+H+S L GP ++ P + +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTP 227
++ I +W+ T + G +DA ING G + + + +KVT
Sbjct: 141 NDDTVITLADWYH--TAAKLGPRFPAG-----ADATLING-KGRAPSDTSAELSVIKVTK 192
Query: 228 GKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIAARPYA 280
GK R+++ + + FSI H LTI+E D+ ++ + ++ + AA+ Y+
Sbjct: 193 GKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYS 245
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 422 TGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFD 481
+G + ++ SG+ V VLP NAS+E+ T+ HP HLHG F VV
Sbjct: 357 SGAQTAQDLLPSGS-VXVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSAGSTV- 414
Query: 482 PNKDPAKFNLVDPAERNTV--GVPSGGW-VAIRFLADNPGVWFMHCHLEVHTSWGLKM 536
+N +P R+ V G P+ G V IRFL +NPG WF+HCH++ H G +
Sbjct: 415 -------YNYSNPIFRDVVSTGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAV 465
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 23/219 (10%)
Query: 54 QTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGP 108
++ V VNG PGP I +GD+ + VINN+ + ++HWHG Q + WADGP
Sbjct: 20 HSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADGP 79
Query: 109 AYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLY-----GPIIIL-PKQQASY 162
A+V QCPI G S++Y+F+ Q GT ++H+H+S T Y GP ++ P ++
Sbjct: 80 AFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLS----TQYCDGDRGPFVVYDPNDPSAN 135
Query: 163 PFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFK 222
+ I +W+ + N + GGA DA ING G + + D
Sbjct: 136 LYDVDNLNTVITLTDWYHTAAQ---NGPAKPGGA----DATLINGQ-GRGPSSPSADLAV 187
Query: 223 LKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAV 261
+ VT GK Y R+++ + + FSI H +TI++ D++
Sbjct: 188 ISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSI 226
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 391 NVALLQAHFFNRSKG-VYTTDF--PANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVE 447
N+A+ QA FN + V F P P +G + +++SG V LP +A++E
Sbjct: 323 NLAINQAFNFNGTNHFVDGASFVPPTVPVLSQIVSGAQSAADLLASGL-VYSLPSDANIE 381
Query: 448 VVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTV--GVPSG 505
+ TS HP HLHG F VV + +N DP R+TV G P+
Sbjct: 382 ISFPATSAAAGGPHPFHLHGHAFAVVR--------SAGSTTYNYNDPIFRDTVSTGTPAA 433
Query: 506 GW-VAIRFLADNPGVWFMHCHLEVHTSWGLKMAW 538
V IRF +NPG WF+HCH++ H G + +
Sbjct: 434 NDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 17/213 (7%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGPA 109
T++ + VNG GP I + D + V+N++ +IHWHG+ Q + WADG
Sbjct: 22 TRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGAD 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIILPKQQASYP-FPQP 167
V QCPI G +++Y FT G GT ++H+H L GP++I + +
Sbjct: 81 GVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDED 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTP 227
E I +W+ +I A DA ING G + A + + V
Sbjct: 141 DENTIITLADWYHIPAPSIQGAAQ--------PDATLING-KGRYVGGPAAELSIVNVEQ 191
Query: 228 GKTYLLRMINAALNDELFFSIANHTLTIVETDA 260
GK Y +R+I+ + + FSI H LTI+E D
Sbjct: 192 GKKYRMRLISLSCDPNWQFSIDGHELTIIEVDG 224
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 12/128 (9%)
Query: 412 PANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFF 471
P+ P +G +N ++ +G+ V LP N VE+V+ + ++ HP HLHG F
Sbjct: 350 PSVPTLLQIMSGAQSANDLLPAGS-VYELPRNQVVELVV--PAGVLGGPHPFHLHGHAFS 406
Query: 472 VVAQGFGNFDPNKDPAKFNLVDPAERNTVGVP-SGGWVAIRFLADNPGVWFMHCHLEVHT 530
VV + + +N V+P +R+ V + +G V IRF+ DNPG WF HCH+E H
Sbjct: 407 VVR--------SAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHL 458
Query: 531 SWGLKMAW 538
GL + +
Sbjct: 459 MNGLAIVF 466
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 17/213 (7%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-----YNVTIHWHGVRQLRSGWADGPA 109
T++ + VNG GP I + D + V+N++ +IHWHG+ Q + WADG
Sbjct: 22 TRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGAD 80
Query: 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT-LYGPIIILPKQQASYP-FPQP 167
V QCPI G +++Y FT G GT ++H+H L GP++I + +
Sbjct: 81 GVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDED 140
Query: 168 FEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTP 227
E I +W+ +I A DA ING G + A + + V
Sbjct: 141 DENTIITLADWYHIPAPSIQGAAQ--------PDATLING-KGRYVGGPAAELSIVNVEQ 191
Query: 228 GKTYLLRMINAALNDELFFSIANHTLTIVETDA 260
GK Y +R+I+ + + FSI H LTI+E D
Sbjct: 192 GKKYRMRLISLSCDPNWQFSIDGHELTIIEVDG 224
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 12/128 (9%)
Query: 412 PANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFF 471
P+ P +G +N ++ +G+ V LP N VE+V+ + ++ HP HLHG F
Sbjct: 350 PSVPTLLQIMSGAQSANDLLPAGS-VYELPRNQVVELVV--PAGVLGGPHPFHLHGHAFS 406
Query: 472 VVAQGFGNFDPNKDPAKFNLVDPAERNTVGVP-SGGWVAIRFLADNPGVWFMHCHLEVHT 530
VV + + +N V+P +R+ V + +G V IRF+ DNPG WF HCH+E H
Sbjct: 407 VVR--------SAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHL 458
Query: 531 SWGLKMAW 538
GL + +
Sbjct: 459 MNGLAIVF 466
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 117/254 (46%), Gaps = 20/254 (7%)
Query: 35 GITRHYKFHI-KMQNIT--RLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVT 91
G+T+ Y F++ ++ N + ++ +NG GP I+A GD + + VINN+ N T
Sbjct: 31 GVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGT 90
Query: 92 -IHWHGVRQLRSGWADGPAYVTQCPIQ-TGQSYVYNFTVTGQRGTLFWHAHISWLRATLY 149
IHWHG+ Q + DG VT+CPI G Y + Q GT ++H+H S Y
Sbjct: 91 SIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFS----AQY 145
Query: 150 GPIIILPKQ---QASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTIN 206
G ++ Q AS P+ PI + AD + AP SD IN
Sbjct: 146 GNGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVHFTQ----NNAPPFSDNVLIN 201
Query: 207 GLP-GPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKS 265
G P N + +TPGK + LR++N + + S+ NHT+T++ D V +
Sbjct: 202 GTAVNP--NTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNA 259
Query: 266 KAPNANFLIAARPY 279
++ FL + Y
Sbjct: 260 MTVDSLFLAVGQRY 273
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 461 HPLHLHGFNFFVV---------AQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIR 511
HP+HLHG +F V+ +Q FDP D A+ N +P R+T +P+GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 512 FLADNPGVWFMHCHLEVHTSWGLKMAWI 539
F DNPG W HCH+ H S GL + ++
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 117/254 (46%), Gaps = 20/254 (7%)
Query: 35 GITRHYKFHI-KMQNIT--RLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVT 91
G+T+ Y F++ ++ N + ++ +NG GP I+A GD + + VINN+ N T
Sbjct: 31 GVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGT 90
Query: 92 -IHWHGVRQLRSGWADGPAYVTQCPIQ-TGQSYVYNFTVTGQRGTLFWHAHISWLRATLY 149
IHWHG+ Q + DG VT+CPI G Y + Q GT ++H+H S Y
Sbjct: 91 SIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFS----AQY 145
Query: 150 GPIIILPKQ---QASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTIN 206
G ++ Q AS P+ PI + AD + AP SD IN
Sbjct: 146 GNGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVHFTQ----NNAPPFSDNVLIN 201
Query: 207 GLP-GPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKS 265
G P N + +TPGK + LR++N + + S+ NHT+T++ D V +
Sbjct: 202 GTAVNP--NTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNA 259
Query: 266 KAPNANFLIAARPY 279
++ FL + Y
Sbjct: 260 MTVDSLFLAVGQRY 273
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 461 HPLHLHGFNFFVV---------AQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIR 511
HP+HLHG +F V+ +Q FDP D A+ N +P R+T +P+GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 512 FLADNPGVWFMHCHLEVHTSWGLKMAWI 539
F DNPG W HCH+ H S GL + ++
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 117/254 (46%), Gaps = 20/254 (7%)
Query: 35 GITRHYKFHI-KMQNIT--RLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVT 91
G+T+ Y F++ ++ N + ++ +NG GP I+A GD + + VINN+ N T
Sbjct: 31 GVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGT 90
Query: 92 -IHWHGVRQLRSGWADGPAYVTQCPIQ-TGQSYVYNFTVTGQRGTLFWHAHISWLRATLY 149
IHWHG+ Q + DG VT+CPI G Y + Q GT ++H+H S Y
Sbjct: 91 SIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFS----AQY 145
Query: 150 GPIIILPKQ---QASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTIN 206
G ++ Q AS P+ PI + AD + AP SD IN
Sbjct: 146 GNGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVHFTQ----NNAPPFSDNVLIN 201
Query: 207 GLP-GPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKS 265
G P N + +TPGK + LR++N + + S+ NHT+T++ D V +
Sbjct: 202 GTAVNP--NTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNA 259
Query: 266 KAPNANFLIAARPY 279
++ FL + Y
Sbjct: 260 MTVDSLFLAVGQRY 273
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 461 HPLHLHGFNFFVV---------AQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIR 511
HP+HLHG +F V+ +Q FDP D A+ N +P R+T +P+GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 512 FLADNPGVWFMHCHLEVHTSWGLKMAWI 539
F DNPG W HCH+ H S GL + ++
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 29/188 (15%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQS 121
NGQ P P I EGD + + V N TIHWHG+ Q + +DG + TQ I+ G +
Sbjct: 28 NGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDT 87
Query: 122 YVYNFTVTGQRGTLFWHAHIS-----WLRATLYGPIIILPKQQASYPFPQPFEEVP---- 172
+ Y F GT+++H H++ +R ++GP+I+ PK P P E+
Sbjct: 88 FTYKFKAE-PAGTMWYHCHVNVNEHVTMRG-MWGPLIVEPKN------PLPIEKTVTKDY 139
Query: 173 -IIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTY 231
++ +W + N+ + G ++ D +TIN P +T ++V G
Sbjct: 140 ILMLSDW----VSSWANKPGEGGIPGDVFDYYTINAKSFP-------ETQPIRVKKGDVI 188
Query: 232 LLRMINAA 239
LR+I A
Sbjct: 189 RLRLIGAG 196
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 489 FNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLK 535
F L P + +TV + G + DNPG+W +H H++ HT+ G K
Sbjct: 217 FPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNGDK 263
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 81/191 (42%), Gaps = 36/191 (18%)
Query: 60 TVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTG 119
+ NG+ PGP + AREGD L I N + TIH+HGV + DG + I G
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHRAT---MDGTPGIGAGSIAPG 114
Query: 120 QSYVYNFTVTGQRGTLFWHAHISWL----RATLYGPIIILPKQQASYPFPQPFEEVPIIF 175
QS+ Y F T GT +H H S L LYG I+ PK+
Sbjct: 115 QSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP-------------- 159
Query: 176 GEWWKADTE--TIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
AD E ++N GG N + +++NGLP F + F +KV + +
Sbjct: 160 ----PADDEMVMVMNGYNTDGGDDN--EFYSVNGLPFHFMD------FPVKVKQHELVRI 207
Query: 234 RMINAALNDEL 244
+IN D +
Sbjct: 208 HLINVLEYDPI 218
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 99/247 (40%), Gaps = 31/247 (12%)
Query: 24 ILSELALAKHEGITR---HYKFHIKMQNITRLCQTKSI-VTVNGQFPGPRIIAREGDRLL 79
IL L L K+E + H IK +I + K++ T NG P P+I EGD+L
Sbjct: 34 ILKALPLLKNESKEKNIFHATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLE 93
Query: 80 IRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTV-TGQRGTLFWH 138
I V N +K TIHWHGV DG + PI G+ +Y F + GT ++H
Sbjct: 94 ILVKNKLKEATTIHWHGVPVPPD--QDGSPH---DPILAGEERIYRFEIPQDSAGTYWYH 148
Query: 139 AHISWLRAT-----LYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQT 193
H + + L G +I K+ A +E ++ + + I N
Sbjct: 149 PHPHYTASKQVFMGLAGAFVIKAKKDAL----SHLKEKDLMISDLRLDENAQIPNN---- 200
Query: 194 GGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTL 253
N++D +NG G F FK K+ +R+ NA L I
Sbjct: 201 ----NLND--WLNGREGEF--VLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKF 252
Query: 254 TIVETDA 260
+V TD
Sbjct: 253 ILVGTDG 259
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 460 SHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGV 519
HP H+HG F +++ + A+F A R+T+ V + +R D G+
Sbjct: 406 DHPFHIHGTQFELIS---SKLNGKVQKAEFR----ALRDTINVRPNEELRLRMKQDFKGL 458
Query: 520 WFMHCHLEVHTSWGL 534
HCH+ H G+
Sbjct: 459 RMYHCHILEHEDLGM 473
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 54 QTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQ 113
Q +++T G FPGP + R D + + + N + +HWHG+ S D P
Sbjct: 33 QRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPI--SPKVDDPF---- 86
Query: 114 CPIQTGQSYVYNFTVTGQRGTLFW-HAHIS-----WLRATLYGPIIILPKQQASYPFPQP 167
I G+S+ Y FTV + FW H H+ L A L G +++ ++S
Sbjct: 87 LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVV----ESS------ 136
Query: 168 FEEVPIIFGEWWKADTETII--NEAMQTGGAPNISDAFTINGLPGP--FYNCAAKDTFKL 223
+ +P E +A+ ++ + A+Q G + +NG G N A + T
Sbjct: 137 LDAIP----ELREAEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGALRPTL-- 190
Query: 224 KVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSKAPNANFLIA 275
V T LR++NA+ ++ +H L ++ D + + + L+A
Sbjct: 191 -VAQKATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLA 241
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 43/223 (19%)
Query: 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADG--PAYVTQCPIQTGQSYVYN 125
P II R G R+ + + N + +HWHG W + P++ I G+SY Y+
Sbjct: 38 PTIILRRGQRVDMTLKNKLTEPTIVHWHG---FDVNWHNDAHPSFA----ITPGESYNYS 90
Query: 126 FTVTGQRGTLFWHAHISWLRATLYG----PIIILPKQQASYPFPQPFEEVPIIFGEWWKA 181
F V + GT +H H L A + ++I+ + F ++P+
Sbjct: 91 FDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDLPL-------- 142
Query: 182 DTETIINEAMQTGGAP--NISDAFTINGLPG--PFYNCAAKDTFKLKVTPGKTYLLRMIN 237
+I++ GGAP N + I G G N FKL G +Y LR++N
Sbjct: 143 ----VISDRRFIGGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKLS---GGSYRLRLVN 195
Query: 238 AALNDELFFSIANHTLTIVET--DAVYAKSKAPNANFLIAARP 278
+ N L+ L+IV+ D V + A + FL ARP
Sbjct: 196 GS-NARLYM------LSIVKKNGDVVPMRLIAVDQGFL--ARP 229
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 22/111 (19%)
Query: 66 PGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTG--QSYV 123
PGP I EGD L I N + ++H HG+ S +DG A + + ++ G ++Y
Sbjct: 37 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDAEIS--SDGTA-MNKSDVEPGGTRTYT 93
Query: 124 YNFTVTGQR--GTL------FWHAH---------ISWLRATLYGPIIILPK 157
+ G+R GT +WH H +R LYGP+I+ K
Sbjct: 94 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 144
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 59 VTVNGQFP--GPRIIAREGDRLLIRVINNVKYNVTIHWHGVR--QLRSG---WADGPAYV 111
+T+N + P GP A GDR+ I +I + +Y T H HG R R+G D P+ V
Sbjct: 160 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRV 219
Query: 112 TQCPIQTGQSYVYNFTVTGQR----GTLFWHAHISWLRATLYGPIIILPKQQASYPFPQP 167
I TG + + F + G +H H+ + ++ K + P +P
Sbjct: 220 IDNKI-TGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPGYEP 278
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 22/111 (19%)
Query: 66 PGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTG--QSYV 123
PGP I EGD L I N + ++H HG+ S +DG A + + ++ G ++Y
Sbjct: 75 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 131
Query: 124 YNFTVTGQR--GTL------FWHAH---------ISWLRATLYGPIIILPK 157
+ G+R GT +WH H +R LYGP+I+ K
Sbjct: 132 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 182
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 59 VTVNGQFP--GPRIIAREGDRLLIRVINNVKYNVTIHWHGVR--QLRSG---WADGPAYV 111
+T+N + P GP A GDR+ I +I + +Y T H HG R R+G D P+ V
Sbjct: 198 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRV 257
Query: 112 TQCPIQTGQSYVYNFTVTGQR----GTLFWHAHISWLRATLYGPIIILPKQQASYPFPQP 167
I TG + + F + G +H H+ + ++ K + P +P
Sbjct: 258 IDNKI-TGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPGYEP 316
Query: 168 FE 169
E
Sbjct: 317 HE 318
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 22/111 (19%)
Query: 66 PGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTG--QSYV 123
PGP I EGD L I N + ++H HG+ S +DG A + + ++ G ++Y
Sbjct: 34 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 90
Query: 124 YNFTVTGQR--GTL------FWHAH---------ISWLRATLYGPIIILPK 157
+ G+R GT +WH H +R LYGP+I+ K
Sbjct: 91 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 141
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 59 VTVNGQFP--GPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWAD 106
+T+N + P GP A GDR+ I +I + +Y T H HG R WAD
Sbjct: 157 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WAD 201
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 22/112 (19%)
Query: 65 FPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTG--QSY 122
PGP I EGD L I N + V++H HG+ S +DG ++ ++ G ++Y
Sbjct: 39 IPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYEIS--SDG-TKQSRSDVEPGGTRTY 95
Query: 123 VYNFTVTGQR--GTL------FWHAH---------ISWLRATLYGPIIILPK 157
+ V G+R GT +WH H +R LYGP+I+ K
Sbjct: 96 TWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 147
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 34 EGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIH 93
+ I R YK M +T+ + GP + GD LLI N I+
Sbjct: 417 QRIGRKYKKVRFMAYTDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIY 476
Query: 94 WHGVRQLRSGWA----DGPAYVTQCPIQTGQSYVYNFTVTGQRG---------TLFWHAH 140
HG+ +R ++ G ++ PI G+ + Y +TVT + G T ++ +
Sbjct: 477 PHGITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSF 536
Query: 141 ISWLR---ATLYGPIIILPKQ 158
++ R + L GP++I K+
Sbjct: 537 VNMERDLASGLIGPLLICYKE 557
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 34 EGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIH 93
+ I R YK M +T+ + GP + GD LLI N I+
Sbjct: 418 QRIGRKYKKVRFMAYTDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIY 477
Query: 94 WHGVRQLRSGWA----DGPAYVTQCPIQTGQSYVYNFTVTGQRG---------TLFWHAH 140
HG+ +R ++ G ++ PI G+ + Y +TVT + G T ++ +
Sbjct: 478 PHGITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSF 537
Query: 141 ISWLR---ATLYGPIIILPKQ 158
++ R + L GP++I K+
Sbjct: 538 VNMERDLASGLIGPLLICYKE 558
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 22/111 (19%)
Query: 66 PGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTG--QSYV 123
PGP I EGD L I N + ++H HG+ S +DG A + + ++ G ++Y
Sbjct: 38 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEIS--SDGTA-MNKSDVEPGGTRTYT 94
Query: 124 YNFTVTGQR--GTL------FWHAH---------ISWLRATLYGPIIILPK 157
+ G+R GT +WH H +R LYGP+I+ K
Sbjct: 95 WRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK 145
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 59 VTVNGQFP--GPRIIAREGDRLLIRVINNVKYNVTIHWHGVR--QLRSG---WADGPAYV 111
+T+N + P GP A GDR+ I +I + +Y T H HG R R+G D P+ V
Sbjct: 161 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRV 220
Query: 112 TQCPIQTGQSYVYNFTVTGQR----GTLFWHAHISWLRATLYGPIIILPKQQASYPFPQP 167
I TG + + F + G +H H+ + ++ K + P +P
Sbjct: 221 IDNKI-TGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPGYEP 279
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 88/240 (36%), Gaps = 50/240 (20%)
Query: 39 HYKFHIK--MQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHG 96
+Y+ IK + + +V +G PGP G ++R INN + ++H HG
Sbjct: 38 YYEVEIKPFTHQVYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHG 97
Query: 97 --VRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIII 154
R GWA+ +T+ G Y + TL++H H + A
Sbjct: 98 SFSRAAFDGWAED---ITEP----GSFKDYYYPNRQSARTLWYHDHAMHITAE-----NA 145
Query: 155 LPKQQASYPFPQPFEE---VPIIFGEWWKADTETIINEAMQTGGAPNIS----------D 201
Q Y P E+ +P +GE+ D I+ T ++ D
Sbjct: 146 YRGQAGLYMLTDPAEDALNLPSGYGEF---DIPMILTSKQYTANGNLVTTNGELNSFWGD 202
Query: 202 AFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAV 261
+NG P PF N V P K Y R ++AA++ L +TDA+
Sbjct: 203 VIHVNGQPWPFKN----------VEPRK-YRFRFLDAAVSRSF-------GLYFADTDAI 244
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 460 SHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDP---AERNTVGVPSGGWVAIRFLADN 516
+HP+H+H +F V+++ GN P + L D R TV V + A
Sbjct: 397 THPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWLGRRETVVVEA-------HYAPF 449
Query: 517 PGVWFMHCHLEVHTSWGLKMAW 538
PGV+ HCH +H + A+
Sbjct: 450 PGVYMFHCHNLIHEDHDMMAAF 471
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 29/216 (13%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNV------------------KYNVTIHWHGVRQLRSG 103
NG FPGP I + + + ++ +NN+ + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSEEPEVKTVVHLHGGVTPDDS 111
Query: 104 WADGPAYVTQCPIQTG---QSYVYNFTVTGQRGTLFW-HAHISWLR-----ATLYGPIII 154
A+ ++ QTG + VY++ QRG + W H H L A L G II
Sbjct: 112 DGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVGAYII 170
Query: 155 LPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYN 214
++ P +VP++ + + ++ + +P++ + + G
Sbjct: 171 HDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETIL 230
Query: 215 CAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIAN 250
K L+V P K Y R+INA+ S+ N
Sbjct: 231 VNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDN 265
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWHA----HISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +HA + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHAAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 17/80 (21%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVW 520
H +H HG +F +G + D + G + + PG+W
Sbjct: 975 HTVHFHGHSFQYKHRGVYSSD-----------------VFDIFPGTYQTLEMFPRTPGIW 1017
Query: 521 FMHCHLEVHTSWGLKMAWIV 540
+HCH+ H G++ + V
Sbjct: 1018 LLHCHVTDHIHAGMETTYTV 1037
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 22/143 (15%)
Query: 36 ITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWH 95
I R YK + +Q +T V F GP I A GD++ + + N T H H
Sbjct: 44 IGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSH 103
Query: 96 GVRQLRSGWADGPAY--------VTQCPIQTGQSYVYNFTVTGQRG---------TLFWH 138
G+ + +G Y + G+ Y Y T ++ T +H
Sbjct: 104 GITYYKE--HEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYH 161
Query: 139 AHISW---LRATLYGPIIILPKQ 158
+HI + + L GP+II K
Sbjct: 162 SHIDAPKDIASGLIGPLIICKKD 184
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles
Of Various Metal Cation Binding Sites
Length = 1065
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 22/143 (15%)
Query: 36 ITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWH 95
I R YK + +Q +T V F GP I A GD++ + + N T H H
Sbjct: 63 IGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPYTFHSH 122
Query: 96 GVRQLRSGWADGPAY--------VTQCPIQTGQSYVYNFTVTGQRG---------TLFWH 138
G+ + +G Y + G+ Y Y T ++ T +H
Sbjct: 123 GITYYKE--HEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYH 180
Query: 139 AHISW---LRATLYGPIIILPKQ 158
+HI + + L GP+II K
Sbjct: 181 SHIDAPKDIASGLIGPLIICKKD 203
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 17/80 (21%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVW 520
H +H HG +F +G + D + G + + PG+W
Sbjct: 994 HTVHFHGHSFQYKHRGVYSSD-----------------VFDIFPGTYQTLEMFPRTPGIW 1036
Query: 521 FMHCHLEVHTSWGLKMAWIV 540
+HCH+ H G++ + V
Sbjct: 1037 LLHCHVTDHIHAGMETTYTV 1056
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 36 ITRHY--KFHIKMQNITRLCQTKSIV-----TVNGQFPGPRIIAREGDRLLIRVINN--- 85
I R Y K +KM+ + + + V T +G PG I REGD + + NN
Sbjct: 31 IDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSS 90
Query: 86 -VKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHIS-- 142
V +NV H + + A P G++ ++F Q G +H ++
Sbjct: 91 TVPHNVDFHAATGQGGGA------AATFTAP---GRTSTFSFKAL-QPGLYIYHCAVAPV 140
Query: 143 --WLRATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWW 179
+ +YG I++ PK+ P+ +E I+ G+++
Sbjct: 141 GMHIANGMYGLILVEPKEG----LPKVDKEFYIVQGDFY 175
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + L G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPEG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + L G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPEG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 51 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 103
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + L G +++LP+ P
Sbjct: 104 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPQG 160
Query: 166 QPF 168
+P
Sbjct: 161 KPL 163
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 33/220 (15%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNV----------------------KYNVTIHWHGVRQ 99
NG FPGP I + + + ++ +NN+ + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 100 LRSGWADGPAYVTQCPIQTG---QSYVYNFTVTGQRGTLFW-HAHISWLR-----ATLYG 150
A+ ++ QTG + VY++ QRG + W H H L A L G
Sbjct: 112 PDDSAGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVG 170
Query: 151 PIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPG 210
II ++ P +VP++ + + ++ + +P++ + + G
Sbjct: 171 AYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCG 230
Query: 211 PFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIAN 250
K L+V P K Y R+INA+ S+ N
Sbjct: 231 ETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDN 269
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116e Mutant
Length = 513
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 33/220 (15%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNV----------------------KYNVTIHWHGVRQ 99
NG FPGP I + + + ++ +NN+ + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 100 LRSGWADGPAYVTQCPIQTG---QSYVYNFTVTGQRGTLFW-HAHISWLR-----ATLYG 150
A+ ++ QTG + VY++ QRG + W H H L A L G
Sbjct: 112 PDDSEGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVG 170
Query: 151 PIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPG 210
II ++ P +VP++ + + ++ + +P++ + + G
Sbjct: 171 AYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCG 230
Query: 211 PFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIAN 250
K L+V P K Y R+INA+ S+ N
Sbjct: 231 ETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDN 269
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVW 520
H HLHG + G + + P L+D + N GV S G+ I PG+W
Sbjct: 212 HTFHLHGHRWLDNRTGMRTSEYDPSP----LIDIKDLNP-GV-SFGFQVIAGEGVGPGMW 265
Query: 521 FMHCHLEVHTSWGLKMAWIV 540
HCH++ H+ G+ ++V
Sbjct: 266 MYHCHVQNHSDMGMAGMFLV 285
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQS 121
NG GP + + G + + + N + T+HWHG+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 122 YVYNFTVTGQRGTLFWHAHI-----SWLRATLYGPIIILPKQQASYPFPQPF--EEVPII 174
V T ++H H + L G ++I + P+ + ++VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 175 FGE-WWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
+ + AD + + T D NG P + A + +L++ G
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQH-AAPRGWLRLRLLNGCNA-- 213
Query: 234 RMINAALNDELFFSIANHTLTIVETDA 260
R +N A +D N L ++ +D
Sbjct: 214 RSLNFATSD-------NRPLYVIASDG 233
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSG-GWVAIRFLADNPG- 518
HP H+HG F ++++ K PA ++TV V V ++F D P
Sbjct: 415 HPFHIHGTQFRILSEN------GKPPAAHR---AGWKDTVKVEGNVSEVLVKFNHDAPKE 465
Query: 519 -VWFMHCHLEVHTSWGLKMAWIVN 541
+ HCHL H G+ + + V+
Sbjct: 466 HAYMAHCHLLEHEDTGMMLGFTVS 489
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNV--TIHWHGVRQLRSGWADGPAYVT 112
T +T NG PGP ++ EGD + + ++N + ++ +HG A G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGATG-----ALGGAKLT 106
Query: 113 QCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFPQP 167
+ G+ F + GT +H + W + + + G +++LP+ P +P
Sbjct: 107 N--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
Query: 168 F 168
Sbjct: 164 L 164
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 33/220 (15%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNV----------------------KYNVTIHWHGVRQ 99
NG FPGP I + + + ++ +NN+ + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 100 LRSGWADGPAYVTQCPIQTG---QSYVYNFTVTGQRGTLFW-HAHISWLR-----ATLYG 150
A+ ++ QTG + VY++ QRG + W H H L A L G
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVG 170
Query: 151 PIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPG 210
II ++ P +VP++ + + ++ + +P++ + + G
Sbjct: 171 AYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCG 230
Query: 211 PFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIAN 250
K L+V P K Y R+INA+ S+ N
Sbjct: 231 ETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDN 269
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 33/220 (15%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNV----------------------KYNVTIHWHGVRQ 99
NG FPGP I + + + ++ +NN+ + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 100 LRSGWADGPAYVTQCPIQTG---QSYVYNFTVTGQRGTLFW-HAHISWLR-----ATLYG 150
A+ ++ QTG + VY++ QRG + W H H L A L G
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVG 170
Query: 151 PIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPG 210
II ++ P +VP++ + + ++ + +P++ + + G
Sbjct: 171 AYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCG 230
Query: 211 PFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIAN 250
K L+V P K Y R+INA+ S+ N
Sbjct: 231 ETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDN 269
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 33/220 (15%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNV----------------------KYNVTIHWHGVRQ 99
NG FPGP I + + + ++ +NN+ + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 100 LRSGWADGPAYVTQCPIQTG---QSYVYNFTVTGQRGTLFW-HAHISWLR-----ATLYG 150
A+ ++ QTG + VY++ QRG + W H H L A L G
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVG 170
Query: 151 PIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPG 210
II ++ P +VP++ + + ++ + +P++ + + G
Sbjct: 171 AYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCG 230
Query: 211 PFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIAN 250
K L+V P K Y R+INA+ S+ N
Sbjct: 231 ETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDN 269
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 33/220 (15%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNV----------------------KYNVTIHWHGVRQ 99
NG FPGP I + + + ++ +NN+ + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 100 LRSGWADGPAYVTQCPIQTG---QSYVYNFTVTGQRGTLFW-HAHISWLR-----ATLYG 150
A+ ++ QTG + VY++ QRG + W H H L A L G
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVG 170
Query: 151 PIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPG 210
II ++ P +VP++ + + ++ + +P++ + + G
Sbjct: 171 AYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCG 230
Query: 211 PFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIAN 250
K L+V P K Y R+INA+ S+ N
Sbjct: 231 ETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDN 269
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNV--TIHWHGVRQLRSGWADGPAYVT 112
T +T NG PGP ++ EGD + + ++N + ++ +HG A G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGATG-----ALGGAKLT 106
Query: 113 QCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFPQP 167
+ G+ F + GT +H + W + + + G +++LP+ P +P
Sbjct: 107 N--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
Query: 168 F 168
Sbjct: 164 L 164
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 33/220 (15%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNV----------------------KYNVTIHWHGVRQ 99
NG FPGP I + + + ++ +NN+ + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 100 LRSGWADGPAYVTQCPIQTG---QSYVYNFTVTGQRGTLFW-HAHISWLR-----ATLYG 150
A+ ++ QTG + VY++ QRG + W H H L A L G
Sbjct: 112 PDDSDGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVG 170
Query: 151 PIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPG 210
II ++ P +VP++ + + ++ + +P++ + + G
Sbjct: 171 AYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCG 230
Query: 211 PFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIAN 250
K L+V P K Y R+INA+ S+ N
Sbjct: 231 ETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDN 269
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116n Mutant
Length = 513
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 33/220 (15%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNV----------------------KYNVTIHWHGVRQ 99
NG FPGP I + + + ++ +NN+ + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVT 111
Query: 100 LRSGWADGPAYVTQCPIQTG---QSYVYNFTVTGQRGTLFW-HAHISWLR-----ATLYG 150
A+ ++ QTG + VY++ QRG + W H H L A L G
Sbjct: 112 PDDSNGYPEAWFSKDFEQTGPYFKREVYHYP-NQQRGAILWYHDHAMALTRLNVYAGLVG 170
Query: 151 PIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPG 210
II ++ P +VP++ + + ++ + +P++ + + G
Sbjct: 171 AYIIHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCG 230
Query: 211 PFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIAN 250
K L+V P K Y R+INA+ S+ N
Sbjct: 231 ETILVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDN 269
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNV--TIHWHGVRQLRSGWADGPAYVT 112
T +T NG PGP ++ EGD + + ++N + ++ +HG A G A +T
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGATG-----ALGGAKLT 106
Query: 113 QCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFPQP 167
+ G+ F + GT +H + W + + + G +++LP+ P +P
Sbjct: 107 N--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
Query: 168 F 168
Sbjct: 164 L 164
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQS 121
NG GP + + G + + + N + T+HWHG+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 122 YVYNFTVTGQRGTLFWHAHI-----SWLRATLYGPIIILPKQQASYPFPQPF--EEVPII 174
V T ++H H + L G ++I + P+ + ++VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 175 FGE-WWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
+ + AD + + T D NG P + A + +L++ G
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQH-AAPRGWLRLRLLNGCNA-- 213
Query: 234 RMINAALNDELFFSIANHTLTIVETDA 260
R +N A +D N L ++ +D
Sbjct: 214 RSLNFATSD-------NRPLYVIASDG 233
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQS 121
NG GP + + G + + + N + T+HWHG+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 122 YVYNFTVTGQRGTLFWHAHI-----SWLRATLYGPIIILPKQQASYPFPQPF--EEVPII 174
V T ++H H + L G ++I + P+ + ++VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 175 FGE-WWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
+ + AD + + T D NG P + A + +L++ G
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYP-QHAAPRGWLRLRLLNGCNA-- 213
Query: 234 RMINAALNDELFFSIANHTLTIVETDA 260
R +N A +D N L ++ +D
Sbjct: 214 RSLNFATSD-------NRPLYVIASDG 233
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSG-GWVAIRFLADNPG- 518
HP H+HG F ++++ K PA ++TV V V ++F D P
Sbjct: 415 HPFHIHGTQFRILSEN------GKPPAAHR---AGWKDTVKVEGNVSEVLVKFNHDAPKE 465
Query: 519 -VWFMHCHLEVHTSWGLKMAWIV 540
+ HCHL H G+ + + V
Sbjct: 466 HAYMAHCHLLEHEDTGMMLGFTV 488
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVEFH-------GATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 53 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 105
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 106 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 162
Query: 166 QPF 168
+P
Sbjct: 163 KPL 165
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVNFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQS 121
NG GP + + G + + + N + T+HWHG+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 122 YVYNFTVTGQRGTLFWHAHI-----SWLRATLYGPIIILPKQQASYPFPQPF--EEVPII 174
V T ++H H + L G ++I + P+ + ++VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 175 FGE-WWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
+ + AD + + T D NG P + A + +L++ G
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQH-AAPRGWLRLRLLNGCNA-- 213
Query: 234 RMINAALNDELFFSIANHTLTIVETDA 260
R +N A +D N L ++ +D
Sbjct: 214 RSLNFATSD-------NRPLYVIASDG 233
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSG-GWVAIRFLADNPG- 518
HP H+HG F ++++ K PA ++TV V V ++F D P
Sbjct: 415 HPFHIHGTQFRILSEN------GKPPAAHR---AGWKDTVKVEGNVSEVLVKFNHDAPKE 465
Query: 519 -VWFMHCHLEVHTSWGLKMAWIV 540
+ HCHL H G+ + + V
Sbjct: 466 HAYMAHCHLLEHDDTGMMLGFTV 488
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQS 121
NG GP + + G + + + N + T+HWHG+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 122 YVYNFTVTGQRGTLFWHAHI-----SWLRATLYGPIIILPKQQASYPFPQPF--EEVPII 174
V T ++H H + L G ++I + P+ + ++VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 175 FGE-WWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
+ + AD + + T D NG P + A + +L++ G
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQH-AAPRGWLRLRLLNGCNA-- 213
Query: 234 RMINAALNDELFFSIANHTLTIVETDA 260
R +N A +D N L ++ +D
Sbjct: 214 RSLNFATSD-------NRPLYVIASDG 233
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSG-GWVAIRFLADNPG- 518
HP H+HG F ++++ K PA ++TV V V ++F D P
Sbjct: 415 HPFHIHGTQFRILSEN------GKPPAAHR---AGWKDTVKVEGNVSEVLVKFNHDAPKE 465
Query: 519 -VWFMHCHLEVHTSWGLKMAWIV 540
+ HCHL H G+ + + V
Sbjct: 466 HAYMAHCHLLEHEDTGMMLGFTV 488
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQS 121
NG GP + + G + + + N + T+HWHG+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 122 YVYNFTVTGQRGTLFWHAHI-----SWLRATLYGPIIILPKQQASYPFPQPF--EEVPII 174
V T ++H H + L G ++I + P+ + ++VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 175 FGE-WWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
+ + AD + + T D NG P + A + +L++ G
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQH-AAPRGWLRLRLLNGCNA-- 213
Query: 234 RMINAALNDELFFSIANHTLTIVETDA 260
R +N A +D N L ++ +D
Sbjct: 214 RSLNFATSD-------NRPLYVIASDG 233
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSG-GWVAIRFLADNPG- 518
HP H+HG F ++++ K PA ++TV V V ++F D P
Sbjct: 367 HPFHIHGTQFRILSEN------GKPPAAHRA---GWKDTVKVEGNVSEVLVKFNHDAPKE 417
Query: 519 -VWFMHCHLEVHTSWGLKMAWIV 540
+ HCHL H G+ + + V
Sbjct: 418 HAYMAHCHLLEHEDTGMMLGFTV 440
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQS 121
NG GP + + G + + + N + T+HWHG+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 122 YVYNFTVTGQRGTLFWHAHI-----SWLRATLYGPIIILPKQQASYPFPQPF--EEVPII 174
V T ++H H + L G ++I + P+ + ++VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 175 FGE-WWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
+ + AD + + T D NG P + A + +L++ G
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYP-QHAAPRGWLRLRLLNGCNA-- 213
Query: 234 RMINAALNDELFFSIANHTLTIVETDA 260
R +N A +D N L ++ +D
Sbjct: 214 RSLNFATSD-------NRPLYVIASDG 233
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSG-GWVAIRFLADNPG- 518
HP H+HG F ++++ K PA ++TV V V ++F D P
Sbjct: 415 HPFHIHGTQFRILSEN------GKPPAAHR---AGWKDTVKVEGNVSEVLVKFNHDAPKE 465
Query: 519 -VWFMHCHLEVHTSWGLKMAWIV 540
+ HCHL H G+ + + V
Sbjct: 466 HAYMAHCHLLEHEDTGMMLGFTV 488
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 23/207 (11%)
Query: 62 NGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQS 121
NG GP + + G + + + N + T+HWHG+ G DG Q I G
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 122 YVYNFTVTGQRGTLFWHAHI-----SWLRATLYGPIIILPKQQASYPFPQPF--EEVPII 174
V T ++H H + L G ++I + P+ + ++VP+I
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 175 FGE-WWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
+ + AD + + T D NG P + A + +L++ G
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYP-QHAAPRGWLRLRLLNGCNA-- 213
Query: 234 RMINAALNDELFFSIANHTLTIVETDA 260
R +N A +D N L ++ +D
Sbjct: 214 RSLNFATSD-------NRPLYVIASDG 233
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 58 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAK 110
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 111 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQG 167
Query: 166 QPF 168
+P
Sbjct: 168 KPL 170
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPSGMVPWHVVSGMSGTLMVLPRDGLKDPAG 161
Query: 166 QPFE 169
P
Sbjct: 162 APLH 165
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIH 93
T +T NG PGP ++ EGD + + ++ N++ +NV H
Sbjct: 48 TAQAMTFNGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFH 90
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGASGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNV--TIHWHGVRQLRSGWA-----DG 107
T +T NG PGP ++ EGD + + ++N + + +HG G G
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPG 111
Query: 108 PAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIIILPKQQASYPFPQP 167
+ ++VY V G + WH +S + TL ++LP+ P +P
Sbjct: 112 EQATLRFKADRSGTFVY---VCAPEGMVPWHV-VSGMSGTL----MVLPRDGLKDPQGKP 163
Query: 168 F 168
Sbjct: 164 L 164
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 22/111 (19%)
Query: 67 GPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQC-PIQT------- 118
GP + A GD + + N ++IH G++ S +++G +Y P++
Sbjct: 59 GPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIK--YSKFSEGASYSDHTLPMEKMDDAVAP 116
Query: 119 GQSYVYNFTVTGQRG---------TLFWHAHISWLR---ATLYGPIIILPK 157
GQ Y Y + ++ G T ++++++ + + L GP++I K
Sbjct: 117 GQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKK 167
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGQSGTLMVLPRDGLKDPEG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWH----AHISW-LRATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + W + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPWHVVSGQSGTLMVLPRDGLKDPEG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 52 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 104
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWL-----RATLYGPIIILPKQQASYPFP 165
+T + G+ F + GT +H + + + G +++LP+ P
Sbjct: 105 LTN--VNPGEQATLRFKAD-RSGTFVYHCAPEGMVPHHVVSGMSGTLMVLPRDGLKDPQG 161
Query: 166 QPF 168
+P
Sbjct: 162 KPL 164
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 23 WILSELALAKHEGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRI--IAREGDRLLI 80
W+L+ A H + + + + +ITR TK I+ V +FP P REGD L+
Sbjct: 35 WVLT----AAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLL 90
Query: 81 RVINNVKYN 89
++ K N
Sbjct: 91 QLTEKAKIN 99
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 176 GEWWKADTETIINEAMQTGGAP--NISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
GEWWKA + T Q G P ++ A ++ P F N + KD + + PG T+
Sbjct: 44 GEWWKAQSLT----TGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGS 99
Query: 234 RMINAALNDELFFSIANHTLTIVETDAV--YAKSKAPNANFLIAAR 277
+I + + FS++ + + V Y N F I+ R
Sbjct: 100 FLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPR 145
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVI----NNVKYNVTIHWHGVRQLRSGWADGPAY 110
T +T NG PGP ++ EGD + + ++ N + +NV H + A G A
Sbjct: 53 TLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAK 105
Query: 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIIILPKQQASYPFPQPF 168
+T + G+ F + GT +H + G +++LP+ P +P
Sbjct: 106 LTN--VNPGEQATLRFKAD-RSGTFVYHC---TPHPFMSGTLMVLPRDGLKDPQGKPL 157
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 23 WILSELALAKHEGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRI--IAREGDRLLI 80
W+L+ A H + + + + +ITR TK I+ V +FP P REGD L+
Sbjct: 35 WVLT----AAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLL 90
Query: 81 RVINNVKYN 89
++ K N
Sbjct: 91 QLTEKAKIN 99
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 176 GEWWKADTETIINEAMQTGGAP--NISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
GEWWKA + T Q G P ++ A ++ P F N + KD + + PG T+
Sbjct: 36 GEWWKAQSLT----TGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGS 91
Query: 234 RMINAALNDELFFSIANHTLTIVETDAV--YAKSKAPNANFLIAAR 277
+I + + FS++ + + V Y N F I+ R
Sbjct: 92 FLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPR 137
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 49 ITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVIN 84
I R +T NG PGP ++ E D + +R+IN
Sbjct: 52 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLIN 87
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 49 ITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVIN 84
I R +T NG PGP ++ E D + +R+IN
Sbjct: 52 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLIN 87
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter
Cycloclastes Cu Nitrite Reductase With Endogenously
Bound Nitrite And No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu
Nitrite Reductase With Bound No
Length = 340
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 49 ITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVIN 84
I R +T NG PGP ++ E D + +R+IN
Sbjct: 52 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLIN 87
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 49 ITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVIN 84
I R +T NG PGP ++ E D + +R+IN
Sbjct: 52 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLIN 87
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 28.9 bits (63), Expect = 6.9, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 176 GEWWKADTETIINEAMQTGGAP--NISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233
GEWWKA + T Q G P ++ A ++ P F N + KD + + PG T+
Sbjct: 44 GEWWKAQSLT----TGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGS 99
Query: 234 RMINAALNDELFFSIANHTLTIVETDAV--YAKSKAPNANFLIAAR 277
+I + + FS++ + + V Y N F I+ R
Sbjct: 100 FLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPR 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,787,527
Number of Sequences: 62578
Number of extensions: 713652
Number of successful extensions: 1609
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 213
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)