Query 008592
Match_columns 560
No_of_seqs 231 out of 1773
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 14:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 4E-103 9E-108 844.1 60.7 518 35-560 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 4E-101 9E-106 820.4 57.0 503 30-560 20-554 (596)
3 PLN02354 copper ion binding / 100.0 2.2E-98 5E-103 800.7 58.4 505 15-560 6-538 (552)
4 PLN02792 oxidoreductase 100.0 1.4E-98 3E-103 798.5 55.8 489 31-560 11-523 (536)
5 PLN02835 oxidoreductase 100.0 4.4E-98 1E-102 797.5 59.2 499 10-560 4-531 (539)
6 PLN02991 oxidoreductase 100.0 2.8E-98 6E-103 794.7 57.0 474 34-560 25-530 (543)
7 PLN02168 copper ion binding / 100.0 5.9E-97 1E-101 786.2 55.2 479 34-560 23-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 1.6E-96 4E-101 776.0 57.1 510 30-560 21-555 (563)
9 PLN02191 L-ascorbate oxidase 100.0 3.9E-91 8.5E-96 750.4 56.6 492 35-560 21-561 (574)
10 PLN02604 oxidoreductase 100.0 6.5E-91 1.4E-95 750.7 58.3 502 25-560 12-561 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 2.1E-90 4.5E-95 744.9 55.7 491 37-560 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2.6E-88 5.6E-93 726.4 51.6 472 38-544 9-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 3.3E-74 7.1E-79 616.0 48.6 411 38-541 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 3.4E-72 7.4E-77 596.5 41.6 420 37-541 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 8.3E-71 1.8E-75 581.3 40.7 394 39-542 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.1E-57 2.5E-62 484.1 37.9 405 38-542 34-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.7E-41 3.8E-46 340.1 22.5 215 32-265 22-246 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 9.1E-37 2E-41 261.2 12.7 116 43-158 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 8.7E-30 1.9E-34 227.3 11.8 107 432-542 30-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.8 1.5E-20 3.2E-25 171.3 10.2 129 169-299 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 6.4E-18 1.4E-22 150.2 12.2 103 51-155 36-148 (148)
22 TIGR01480 copper_res_A copper- 99.6 3.3E-15 7.1E-20 161.3 10.5 100 54-155 483-587 (587)
23 TIGR03096 nitroso_cyanin nitro 99.5 7.6E-13 1.7E-17 113.5 12.1 113 13-145 4-124 (135)
24 TIGR02376 Cu_nitrite_red nitri 99.3 1.9E-10 4E-15 116.0 22.4 91 438-542 204-297 (311)
25 PLN02604 oxidoreductase 98.9 4E-09 8.7E-14 115.0 10.6 92 436-544 55-146 (566)
26 PF07732 Cu-oxidase_3: Multico 98.8 2.3E-08 4.9E-13 85.8 9.1 91 435-543 25-116 (117)
27 PF07731 Cu-oxidase_2: Multico 98.6 5E-08 1.1E-12 86.7 6.6 88 68-156 34-136 (138)
28 PRK10965 multicopper oxidase; 98.6 3.5E-06 7.7E-11 90.9 18.9 198 57-265 213-470 (523)
29 TIGR03388 ascorbase L-ascorbat 98.5 3.8E-07 8.2E-12 99.3 10.9 93 435-544 31-123 (541)
30 TIGR03389 laccase laccase, pla 98.4 1.6E-05 3.6E-10 86.6 19.9 84 57-141 167-264 (539)
31 PRK10883 FtsI repressor; Provi 98.4 1.2E-05 2.6E-10 85.9 17.1 186 56-265 209-416 (471)
32 PRK02710 plastocyanin; Provisi 98.4 7.7E-06 1.7E-10 70.4 12.5 73 68-155 47-119 (119)
33 PF13473 Cupredoxin_1: Cupredo 98.3 3.1E-06 6.6E-11 71.2 7.7 70 68-154 35-104 (104)
34 PLN02191 L-ascorbate oxidase 98.2 7E-06 1.5E-10 89.7 10.8 86 435-543 53-144 (574)
35 TIGR03095 rusti_cyanin rusticy 98.1 1.2E-05 2.7E-10 71.7 8.9 90 436-541 52-148 (148)
36 PF00394 Cu-oxidase: Multicopp 98.1 1.5E-05 3.3E-10 72.6 9.0 94 435-542 59-157 (159)
37 TIGR02656 cyanin_plasto plasto 98.1 1.9E-05 4E-10 65.7 8.5 81 68-155 17-99 (99)
38 TIGR03390 ascorbOXfungal L-asc 97.9 0.00024 5.3E-09 77.3 16.2 83 57-140 172-282 (538)
39 PF00127 Copper-bind: Copper b 97.9 4.7E-05 1E-09 63.3 7.7 82 68-155 17-99 (99)
40 COG2132 SufI Putative multicop 97.9 0.00021 4.5E-09 76.5 13.9 192 55-259 188-394 (451)
41 TIGR02657 amicyanin amicyanin. 97.8 0.0001 2.2E-09 59.1 8.6 74 67-155 10-83 (83)
42 PRK02888 nitrous-oxide reducta 97.7 0.00017 3.8E-09 77.5 10.2 100 47-157 532-635 (635)
43 TIGR03094 sulfo_cyanin sulfocy 97.7 0.00097 2.1E-08 59.7 12.9 99 57-159 73-189 (195)
44 PLN02168 copper ion binding / 97.7 0.00018 3.9E-09 78.0 10.1 92 435-545 56-148 (545)
45 PLN02835 oxidoreductase 97.6 0.00019 4.1E-09 77.9 9.2 90 435-543 59-149 (539)
46 TIGR02656 cyanin_plasto plasto 97.6 0.00031 6.8E-09 58.3 8.0 82 437-541 18-99 (99)
47 PLN02792 oxidoreductase 97.5 0.00039 8.4E-09 75.4 9.2 90 435-543 46-136 (536)
48 PLN00044 multi-copper oxidase- 97.5 0.00041 9E-09 75.7 9.2 91 435-544 59-150 (596)
49 TIGR03096 nitroso_cyanin nitro 97.4 0.00061 1.3E-08 58.9 8.0 59 437-526 62-120 (135)
50 PLN02354 copper ion binding / 97.4 0.00035 7.5E-09 76.1 7.8 91 435-544 57-148 (552)
51 PF06525 SoxE: Sulfocyanin (So 97.4 0.0013 2.9E-08 60.2 10.1 103 57-160 74-191 (196)
52 PLN02991 oxidoreductase 97.2 0.0015 3.2E-08 70.9 9.4 91 435-544 58-149 (543)
53 COG3794 PetE Plastocyanin [Ene 97.1 0.0081 1.7E-07 51.7 11.3 75 68-156 54-128 (128)
54 TIGR02375 pseudoazurin pseudoa 97.0 0.0043 9.2E-08 52.8 8.6 75 68-158 15-90 (116)
55 PF00127 Copper-bind: Copper b 97.0 0.0039 8.4E-08 51.7 8.2 82 437-541 18-99 (99)
56 PRK02888 nitrous-oxide reducta 96.7 0.006 1.3E-07 65.9 9.1 78 437-542 556-634 (635)
57 TIGR03102 halo_cynanin halocya 96.7 0.014 3E-07 49.6 9.3 73 68-155 42-115 (115)
58 PF13473 Cupredoxin_1: Cupredo 96.6 0.01 2.2E-07 49.7 7.9 61 437-528 36-96 (104)
59 KOG1263 Multicopper oxidases [ 96.1 0.027 5.9E-07 61.1 9.8 91 435-544 58-149 (563)
60 PRK02710 plastocyanin; Provisi 96.1 0.029 6.2E-07 48.2 7.9 72 437-541 48-119 (119)
61 COG4454 Uncharacterized copper 95.8 0.034 7.4E-07 48.9 7.2 93 438-541 65-157 (158)
62 TIGR02375 pseudoazurin pseudoa 95.1 0.14 3.1E-06 43.6 8.4 36 504-543 54-89 (116)
63 TIGR02657 amicyanin amicyanin. 94.0 0.43 9.3E-06 38.0 8.4 72 437-541 12-83 (83)
64 COG4454 Uncharacterized copper 93.7 0.71 1.5E-05 40.8 9.8 88 64-156 59-158 (158)
65 TIGR03102 halo_cynanin halocya 93.5 0.57 1.2E-05 39.8 8.6 73 437-541 43-115 (115)
66 PF00116 COX2: Cytochrome C ox 93.2 0.89 1.9E-05 39.0 9.6 73 67-154 45-119 (120)
67 TIGR02695 azurin azurin. Azuri 91.3 1.1 2.4E-05 38.2 7.6 87 68-154 16-125 (125)
68 PF00116 COX2: Cytochrome C ox 90.9 2.8 6.1E-05 35.9 10.0 74 435-540 45-119 (120)
69 PRK10378 inactive ferrous ion 89.5 3.9 8.4E-05 42.2 11.3 78 65-158 41-119 (375)
70 PF06525 SoxE: Sulfocyanin (So 88.9 3.3 7.2E-05 38.3 9.3 101 433-543 83-188 (196)
71 TIGR02866 CoxB cytochrome c ox 88.3 2 4.3E-05 40.5 7.8 76 436-543 117-193 (201)
72 TIGR03094 sulfo_cyanin sulfocy 88.2 5.3 0.00012 36.3 9.7 99 434-542 83-186 (195)
73 COG3794 PetE Plastocyanin [Ene 86.4 4 8.7E-05 35.3 7.8 74 437-542 55-128 (128)
74 TIGR02866 CoxB cytochrome c ox 82.4 14 0.00031 34.7 10.5 76 68-158 117-194 (201)
75 COG1622 CyoA Heme/copper-type 82.3 5.7 0.00012 38.6 7.8 77 68-159 137-215 (247)
76 COG4263 NosZ Nitrous oxide red 73.5 4.7 0.0001 41.9 4.5 77 68-155 558-636 (637)
77 COG1622 CyoA Heme/copper-type 72.7 14 0.00031 35.9 7.4 77 435-543 136-213 (247)
78 PF12690 BsuPI: Intracellular 67.6 29 0.00063 27.4 7.0 59 68-137 16-80 (82)
79 COG2967 ApaG Uncharacterized p 66.7 7.2 0.00016 32.8 3.4 44 80-126 34-85 (126)
80 PF04744 Monooxygenase_B: Mono 66.6 42 0.00092 34.3 9.4 69 55-129 250-334 (381)
81 PF05506 DUF756: Domain of unk 62.6 55 0.0012 26.1 7.9 63 67-138 8-73 (89)
82 TIGR03079 CH4_NH3mon_ox_B meth 62.5 64 0.0014 32.9 9.7 16 113-128 337-352 (399)
83 MTH00140 COX2 cytochrome c oxi 60.8 32 0.0007 33.1 7.3 77 435-543 139-216 (228)
84 MTH00047 COX2 cytochrome c oxi 60.7 69 0.0015 30.0 9.2 75 437-543 117-192 (194)
85 PF05938 Self-incomp_S1: Plant 53.6 90 0.0019 26.0 8.1 69 79-157 2-71 (110)
86 PTZ00047 cytochrome c oxidase 48.2 1.1E+02 0.0023 27.7 7.8 74 437-542 74-148 (162)
87 PF10633 NPCBM_assoc: NPCBM-as 47.9 23 0.00049 27.5 3.3 60 73-136 2-70 (78)
88 PRK05461 apaG CO2+/MG2+ efflux 47.7 28 0.00061 30.1 4.1 20 105-125 66-85 (127)
89 TIGR01433 CyoA cytochrome o ub 42.2 82 0.0018 30.3 6.8 75 437-543 140-215 (226)
90 MTH00008 COX2 cytochrome c oxi 34.1 1.7E+02 0.0036 28.2 7.5 76 435-542 139-215 (228)
91 PF04151 PPC: Bacterial pre-pe 33.7 1.2E+02 0.0026 22.8 5.3 21 220-240 4-24 (70)
92 cd00918 Der-p2_like Several gr 32.3 1.9E+02 0.0041 24.7 6.8 61 67-128 19-87 (120)
93 MTH00023 COX2 cytochrome c oxi 32.3 1.8E+02 0.0038 28.3 7.4 77 435-543 150-227 (240)
94 PF10989 DUF2808: Protein of u 30.9 57 0.0012 28.9 3.5 26 502-527 99-128 (146)
95 MTH00129 COX2 cytochrome c oxi 30.4 1.8E+02 0.0038 28.1 7.0 76 435-542 139-215 (230)
96 PRK13861 type IV secretion sys 30.2 82 0.0018 31.6 4.8 65 12-79 2-66 (292)
97 TIGR03396 PC_PLC phospholipase 30.0 4.5E+02 0.0097 29.9 10.9 67 66-141 592-661 (690)
98 KOG4063 Major epididymal secre 29.6 3.9E+02 0.0085 23.8 8.1 61 69-129 49-123 (158)
99 TIGR01432 QOXA cytochrome aa3 29.5 1.7E+02 0.0037 27.9 6.7 75 437-543 131-206 (217)
100 cd00916 Npc2_like Niemann-Pick 29.0 2E+02 0.0044 24.5 6.5 61 68-128 22-91 (123)
101 PF14392 zf-CCHC_4: Zinc knuck 28.2 73 0.0016 22.3 3.0 33 500-532 13-45 (49)
102 MTH00098 COX2 cytochrome c oxi 28.1 2.4E+02 0.0053 27.1 7.5 75 436-542 140-215 (227)
103 COG1188 Ribosome-associated he 28.1 42 0.00092 27.6 1.9 35 58-92 35-69 (100)
104 PF04744 Monooxygenase_B: Mono 27.4 62 0.0014 33.1 3.4 53 105-157 72-129 (381)
105 COG4263 NosZ Nitrous oxide red 25.5 2.1E+02 0.0046 30.3 6.7 36 499-534 593-632 (637)
106 MTH00185 COX2 cytochrome c oxi 24.6 3.1E+02 0.0067 26.4 7.5 76 435-542 139-215 (230)
107 MTH00038 COX2 cytochrome c oxi 22.9 4.3E+02 0.0093 25.4 8.2 76 435-542 139-215 (229)
108 PRK13254 cytochrome c-type bio 21.5 3.3E+02 0.0071 24.3 6.4 67 38-109 34-101 (148)
109 PRK10378 inactive ferrous ion 21.0 3.3E+02 0.0071 28.4 7.2 38 501-543 81-118 (375)
110 KOG4387 Ornithine decarboxylas 20.0 41 0.00089 30.6 0.4 31 69-99 70-100 (191)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=4.2e-103 Score=844.08 Aligned_cols=518 Identities=69% Similarity=1.268 Sum_probs=418.9
Q ss_pred CceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCcc
Q 008592 35 GITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQC 114 (560)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~ 114 (560)
+++|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||++++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEcccCcceeEeeccccccccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHHhcC
Q 008592 115 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTG 194 (560)
Q Consensus 115 ~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~ 194 (560)
+|+||++|+|+|++++++||||||||.+.+++||+|+|||+++.+.+++++..++|++|+|+||+++...+++......+
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998669999999999998889999999999987766777677899999999999998888776666556
Q ss_pred CCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeCCCccCC---------
Q 008592 195 GAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKS--------- 265 (560)
Q Consensus 195 ~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~p--------- 265 (560)
..+.++|+++||||.+++++|+....+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55667899999999988889988778899999999999999999999999999999999999999999998
Q ss_pred -----------CCCCceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccc
Q 008592 266 -----------KAPNANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPLLKPAAILPKFNDTNFVMQFSKKIR 334 (560)
Q Consensus 266 -----------~~~~~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 334 (560)
++.+++|||++....++...+.+....|+|+|.+..... .+.. + ..+...++.....+...++
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~---~p~~-~--~~~~~~~~~~~~~~~~~l~ 314 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSA---KPIL-P--TLPAYNDTAAATNFSNKLR 314 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCC---CCCC-C--CCCCCCchhhhhHHHhhcc
Confidence 355689999987654443234456689999999864321 1111 2 2222222211111222333
Q ss_pred ccccCCCCCCCCCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceeccCCchhhhHHhhccCCCCcccCCCCCC
Q 008592 335 SLATAKFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQPNVALLQAHFFNRSKGVYTTDFPAN 414 (560)
Q Consensus 335 ~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~ 414 (560)
.+..+.++..+|..+++++.+.+.+......+ ..+...++.++.|++|+++|..|+.++|.+.+.+++ |.+..+++..
T Consensus 315 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~-~~~~~~~~~~ 392 (539)
T TIGR03389 315 SLNSAQYPANVPVTIDRRLFFTIGLGLDPCPN-NTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGIS-GVFTTDFPAN 392 (539)
T ss_pred cccccCCCCCCCCCCCeEEEEEeecccccCcc-cccccCCCcEEEEEECCcccCCCCcchhhhhhcccC-CccccCCccC
Confidence 33333334445555677766666543221100 001122355788999999999898888887766544 5555667777
Q ss_pred CCccccCCCCC-CCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCC
Q 008592 415 PPFKFNYTGTP-PSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVD 493 (560)
Q Consensus 415 ~p~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~ 493 (560)
+|..|++++.. +.+...+.++.++.++.|++||++|+|........||||||||+||||++|.|.|+.......+|+.|
T Consensus 393 ~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~n 472 (539)
T TIGR03389 393 PPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVD 472 (539)
T ss_pred CCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCC
Confidence 88888766542 11112344678899999999999999965323459999999999999999999998765555789999
Q ss_pred CCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCCCCCCCCCCCCCCCCCCC
Q 008592 494 PAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDGKGPKQKLPPPPSDLPKC 560 (560)
Q Consensus 494 p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 560 (560)
|++|||+.|+++||++|||++||||+|+|||||+||+..||+++|.+.++.+..++++++|+.+|+|
T Consensus 473 P~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 473 PPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999988888888999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=4e-101 Score=820.41 Aligned_cols=503 Identities=26% Similarity=0.458 Sum_probs=401.3
Q ss_pred hhhccCceEEEEEEEEEEEeeecC--ceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCC
Q 008592 30 LAKHEGITRHYKFHIKMQNITRLC--QTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADG 107 (560)
Q Consensus 30 ~~~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG 107 (560)
.+++++.+|+|+|+|++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|..++|+||
T Consensus 20 ~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DG 99 (596)
T PLN00044 20 PAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDG 99 (596)
T ss_pred ccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccC
Confidence 445667899999999999999999 456899999999999999999999999999999999999999999999999999
Q ss_pred CCCcCccccCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCC-cceeEEeeeccccChHH
Q 008592 108 PAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPF-EEVPIIFGEWWKADTET 185 (560)
Q Consensus 108 v~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~~ 185 (560)
+++ |||||+||++|+|+|++++|+||||||+|...|+ +||+|+|||++++..++++...+ +|.+|+|+||++++..+
T Consensus 100 v~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~ 178 (596)
T PLN00044 100 VGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRA 178 (596)
T ss_pred CCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHH
Confidence 988 9999999999999999977999999999999998 89999999999876666654433 79999999999988766
Q ss_pred HHHHHHhcCCCCCCCceEEEcCcCCCCCCCC----CCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeCCC
Q 008592 186 IINEAMQTGGAPNISDAFTINGLPGPFYNCA----AKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAV 261 (560)
Q Consensus 186 ~~~~~~~~~~~~~~~d~~lvNG~~~~~~~~~----~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~ 261 (560)
+ ......+..+..+|.++|||+....++|. +...++++|++||+|||||||++....+.|+|+||+|+|||+||.
T Consensus 179 ~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~ 257 (596)
T PLN00044 179 L-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGS 257 (596)
T ss_pred H-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCc
Confidence 4 33444555556789999999965445664 345568999999999999999999999999999999999999999
Q ss_pred ccCC--------------------CCCCc-eEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCC-
Q 008592 262 YAKS--------------------KAPNA-NFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPLLKPAAILPK- 319 (560)
Q Consensus 262 ~v~p--------------------~~~~~-~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~p~~~~~~- 319 (560)
+++| +|.++ +|||++..+......+++..+.|||+|.+.... ...+ . | ..+.
T Consensus 258 ~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~--~~~~-~-P--~~p~~ 331 (596)
T PLN00044 258 YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGP--ASGP-L-P--DAPDD 331 (596)
T ss_pred ccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCC--CCCC-C-C--CCCcc
Confidence 9999 45544 899998653222222456678899999886421 1111 2 4 3343
Q ss_pred CCCchhhhhhcccccccccCCCCCCCCCCcceeEEEEeccCC-cCCCCCCcccCCCCCeeeeeecceeccCCchhhhHHh
Q 008592 320 FNDTNFVMQFSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGL-SPCPQNQTCQGPNNTKLAASVNNVSFVQPNVALLQAH 398 (560)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~ 398 (560)
+.++....++...++.+..++.+...|...+....++++... ..+.....| . .++.|++|+++|..|++++|.++
T Consensus 332 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~-g~~~~s~Nnvsf~~p~~p~L~a~ 407 (596)
T PLN00044 332 QYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELI---D-GKLRATLNEISYIAPSTPLMLAQ 407 (596)
T ss_pred cCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecccccccc---C-CeEEEEECcccCCCCCCcchhhh
Confidence 455543333434454433333333344434443333333211 000000111 1 36889999999999999999887
Q ss_pred hccCCCCcccCCCCCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCC
Q 008592 399 FFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFG 478 (560)
Q Consensus 399 ~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g 478 (560)
+.+.+ |.+..+|++.+|... ....+.++.++.|++|||+|+|.. ...||||||||+|+||++|.|
T Consensus 408 ~~~~~-gv~~~~fp~~pp~~~-----------~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg~G~G 472 (596)
T PLN00044 408 IFNVP-GVFKLDFPNHPMNRL-----------PKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVGMDYG 472 (596)
T ss_pred hccCC-CcccCCCCCCCCccc-----------cccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEeecCC
Confidence 77665 888888888777420 123577899999999999999953 369999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCCCCC-CCCCCCCCCCC
Q 008592 479 NFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDGKGP-KQKLPPPPSDL 557 (560)
Q Consensus 479 ~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~-~~~~~~~p~~~ 557 (560)
.|++. +.+.+|+.||++||||.|+++||++|||++||||+|+|||||+.|...||.+.|.|+++.+. .+++++||.++
T Consensus 473 ~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~ 551 (596)
T PLN00044 473 LWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNA 551 (596)
T ss_pred CCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCccc
Confidence 99965 45689999999999999999999999999999999999999999999999999999999876 88999999999
Q ss_pred CCC
Q 008592 558 PKC 560 (560)
Q Consensus 558 ~~c 560 (560)
+.|
T Consensus 552 ~~C 554 (596)
T PLN00044 552 IFC 554 (596)
T ss_pred Ccc
Confidence 999
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.2e-98 Score=800.72 Aligned_cols=505 Identities=24% Similarity=0.448 Sum_probs=385.0
Q ss_pred HHHHHHHHHHhhhhhhhhccCceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEe
Q 008592 15 TFLGFFALWILSELALAKHEGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHW 94 (560)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~ 94 (560)
+|++++|+++....... +.+.+++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++|+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHW 84 (552)
T PLN02354 6 LLAVLLCLAAAVALVVR-AEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTW 84 (552)
T ss_pred HHHHHHHHHHHHHHhhh-ccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCccccc
Confidence 44445554442222222 24578999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeE
Q 008592 95 HGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPI 173 (560)
Q Consensus 95 HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l 173 (560)
||++|.+++|+||+++ |||||+||++|+|+|++.+|+||||||+|...|+ +||+|+|||++++..+.+++..++|++|
T Consensus 85 HGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l 163 (552)
T PLN02354 85 SGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTV 163 (552)
T ss_pred ccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEE
Confidence 9999999999999999 9999999999999999867899999999999998 8999999999987666666666789999
Q ss_pred EeeeccccChHHHHHHHHhcCCCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeE
Q 008592 174 IFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTL 253 (560)
Q Consensus 174 ~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~ 253 (560)
+|+||+++...++.. ....+..+..+|++||||+....+. ...+.++|++||+|||||||+|....+.|+|+||+|
T Consensus 164 ~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~ 239 (552)
T PLN02354 164 LIGDWYTKSHTALKK-FLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKM 239 (552)
T ss_pred EeeeeccCCHHHHHH-HHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceE
Confidence 999999998766543 3444444456899999999653321 235789999999999999999999999999999999
Q ss_pred EEEEeCCCccCC--------------------CCCCceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCCCCC
Q 008592 254 TIVETDAVYAKS--------------------KAPNANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPLLKP 313 (560)
Q Consensus 254 ~via~DG~~v~p--------------------~~~~~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~p 313 (560)
+|||+||++++| +|.+++|||++...... .+....|+|+|++..... .+.. |
T Consensus 240 tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~---~~~~-p 311 (552)
T PLN02354 240 KLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKGPA---SPEL-P 311 (552)
T ss_pred EEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCCCC---CCCC-C
Confidence 999999999988 34567888887643221 245678999998864221 1111 2
Q ss_pred CCCCCC-CC-CchhhhhhcccccccccCCCCCCC----CCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceec
Q 008592 314 AAILPK-FN-DTNFVMQFSKKIRSLATAKFPAKV----PMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSF 387 (560)
Q Consensus 314 ~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~p~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~ 387 (560)
..+. .. .......+...+.+....+.+... ....++.+.+...... + + ..+.|++|+++|
T Consensus 312 --~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~-g~~~~~iNn~s~ 377 (552)
T PLN02354 312 --EAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK--------V---D-GKLRYALNGVSH 377 (552)
T ss_pred --CCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEeccccc--------C---C-ceEEEEECCccC
Confidence 1111 00 000000111111111111111000 0112233333221110 1 2 256799999999
Q ss_pred cCCchhhhHHhhccCCCCcccCC-CCCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeec
Q 008592 388 VQPNVALLQAHFFNRSKGVYTTD-FPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLH 466 (560)
Q Consensus 388 ~~p~~~~l~~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlH 466 (560)
..|+.|.|.+.+.++..|.+..+ ++..+|..++. ...++.++.++.|++|||+|+|.. ...||||||
T Consensus 378 ~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~---------~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLH 445 (552)
T PLN02354 378 VDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITK---------IKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLD 445 (552)
T ss_pred CCCCCChHHhhhhcccCCccccCccccCCccccCc---------cccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCC
Confidence 99999998887654443554433 33444432110 223567889999999999999964 469999999
Q ss_pred CcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCCCCC
Q 008592 467 GFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDGKGP 546 (560)
Q Consensus 467 G~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~ 546 (560)
||+||||++|.|.|++. ....+|+.||++|||+.|+++||++|||++||||+|+|||||..|+..||.+.|.|.++.+.
T Consensus 446 Gh~F~Vlg~G~G~~~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~ 524 (552)
T PLN02354 446 GYSFFAVAVEPGTWTPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERS 524 (552)
T ss_pred CccEEEEeecCCCCCcc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccc
Confidence 99999999999999865 35678999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCCCCCCCCCC
Q 008592 547 KQKLPPPPSDLPKC 560 (560)
Q Consensus 547 ~~~~~~~p~~~~~c 560 (560)
.+++.++|++.+.|
T Consensus 525 ~~~~~~~P~~~~~C 538 (552)
T PLN02354 525 LRDEYNMPENALLC 538 (552)
T ss_pred cCcCCCCCcccccc
Confidence 88888899999999
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.4e-98 Score=798.52 Aligned_cols=489 Identities=26% Similarity=0.448 Sum_probs=384.8
Q ss_pred hhccCceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCC
Q 008592 31 AKHEGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAY 110 (560)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~ 110 (560)
.++++. ++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||+++
T Consensus 11 ~~~~~~-~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~ 89 (536)
T PLN02792 11 VKADDT-LFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG 89 (536)
T ss_pred hhcCCe-EEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC
Confidence 444444 5899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCccccCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccChHHHHHH
Q 008592 111 VTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINE 189 (560)
Q Consensus 111 ~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 189 (560)
|||||+||++|+|+|++++|+||||||+|...|+ +||+|+|||+++++.+.+++..++|++|+|+||++++...+..
T Consensus 90 -tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~- 167 (536)
T PLN02792 90 -TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK- 167 (536)
T ss_pred -CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-
Confidence 9999999999999999877899999999999988 8999999999866555666667889999999999988766433
Q ss_pred HHhcCCC-CCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeCCCccCC---
Q 008592 190 AMQTGGA-PNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKS--- 265 (560)
Q Consensus 190 ~~~~~~~-~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~p--- 265 (560)
....+.. +..+|++||||+... ..++++|++||+|||||||+|..+.+.|+|+||+|+|||+||++++|
T Consensus 168 ~~~~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~ 240 (536)
T PLN02792 168 ILDGGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMY 240 (536)
T ss_pred HhhccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcce
Confidence 3334432 337899999999643 23689999999999999999999999999999999999999999988
Q ss_pred -----------------CCCCceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCchhhhh
Q 008592 266 -----------------KAPNANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPLLKPAAILPKFNDTNFVMQ 328 (560)
Q Consensus 266 -----------------~~~~~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 328 (560)
+|++++|||++..+..+ ....+.|+|+|.+..... +.. | ..|.+++......
T Consensus 241 ~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~----~~~-p--~~p~~~~~~~~~~ 309 (536)
T PLN02792 241 TSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA----AKVLVSSTLHYSNSKGHK----IIH-A--RQPDPDDLEWSIK 309 (536)
T ss_pred eEEEEccCceEEEEEEcCCCCceEEEEEEeccCC----CCCceEEEEEECCCCCCC----CCC-C--CCCCcCCcccccc
Confidence 45567899988754322 234678999999864221 111 2 2333333322222
Q ss_pred hcccccccccCCCCCCCCCCcceeEEEEeccCC-cCCCCCCcccCCCCCeeeeeecceeccCCchhhhHHhhccCCCCcc
Q 008592 329 FSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGL-SPCPQNQTCQGPNNTKLAASVNNVSFVQPNVALLQAHFFNRSKGVY 407 (560)
Q Consensus 329 ~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~~g~~ 407 (560)
+...++.+..++.+..+|...++...++++... ..+. ... .+.++.|++|+++|..|++++|.+++.++. |.+
T Consensus 310 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~-g~~ 383 (536)
T PLN02792 310 QAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESS-AAL----VKRKQRYAINGVSFVPSDTPLKLADHFKIK-GVF 383 (536)
T ss_pred chhhhhhccCCCCCCCCCCcccccceeccceeEEeccc-ccc----cCceeEEEECCcccCCCCCchhhhhhhccC-CCc
Confidence 212222222222233444332222112211110 0000 000 113578999999999999999988777655 666
Q ss_pred cCC-CCCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCC
Q 008592 408 TTD-FPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDP 486 (560)
Q Consensus 408 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~ 486 (560)
..+ ++..+|..++ ...++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. +.
T Consensus 384 ~~~~~~~~p~~~~~----------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~ 449 (536)
T PLN02792 384 KVGSIPDKPRRGGG----------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SR 449 (536)
T ss_pred CcccCccCCcccCC----------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-cc
Confidence 543 6666664221 123577899999999999999954 35899999999999999999999874 45
Q ss_pred CCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCCCCCCCCCCCCCCCCCCC
Q 008592 487 AKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDGKGPKQKLPPPPSDLPKC 560 (560)
Q Consensus 487 ~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 560 (560)
..+|+.||++||||.|+++||++|||++||||+|+||||+.+|+..||..+|.|+++.+..+++++||++++.|
T Consensus 450 ~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 450 REYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred cccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=4.4e-98 Score=797.52 Aligned_cols=499 Identities=25% Similarity=0.456 Sum_probs=379.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcC
Q 008592 10 AILRATFLGFFALWILSELALAKHEGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYN 89 (560)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~ 89 (560)
.....++++.++.+ +..+...+.+.+|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++
T Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ 81 (539)
T PLN02835 4 AVNLHLLLGVLAVL--SSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQP 81 (539)
T ss_pred HHHHHHHHHHHHHH--HHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCC
Confidence 33445555554433 2333333456899999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCC
Q 008592 90 VTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPF 168 (560)
Q Consensus 90 ~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~ 168 (560)
|+|||||++|.+++|+||+++ |||||+||++|+|+|++++|+||||||+|...|+ +||+|+|||+++...+++++.++
T Consensus 82 ttiHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d 160 (539)
T PLN02835 82 FLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPD 160 (539)
T ss_pred CcEEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCC
Confidence 999999999999999999999 9999999999999999867899999999999998 89999999987655555666678
Q ss_pred cceeEEeeeccccChHHHHHHHHhcCCCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEE
Q 008592 169 EEVPIIFGEWWKADTETIINEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSI 248 (560)
Q Consensus 169 ~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i 248 (560)
+|++|+++||++++..++... ...+.....+|.+||||+.. +.++|++||+|||||||+|..+.+.|+|
T Consensus 161 ~e~~l~l~Dw~~~~~~~~~~~-~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i 229 (539)
T PLN02835 161 GDFTLLVGDWYKTSHKTLQQR-LDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRI 229 (539)
T ss_pred ceEEEEeeccccCCHHHHHHH-hhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEE
Confidence 999999999999987765433 33454556789999999963 4789999999999999999999999999
Q ss_pred cCCeEEEEEeCCCccCC--------------------CCCCceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCC
Q 008592 249 ANHTLTIVETDAVYAKS--------------------KAPNANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNL 308 (560)
Q Consensus 249 ~gh~~~via~DG~~v~p--------------------~~~~~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 308 (560)
+||+|+|||+||++++| ++.+++|||++...... ......|+|+|++.......+
T Consensus 230 ~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~- 304 (539)
T PLN02835 230 QGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTR----QILTATAVLHYSNSRTPASGP- 304 (539)
T ss_pred CCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccC----CCcceEEEEEECCCCCCCCCC-
Confidence 99999999999999988 34557888887542221 234678999998853211111
Q ss_pred CCCCCCCCCCCCC---CchhhhhhcccccccccCCCCCC---C-CCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeee
Q 008592 309 PLLKPAAILPKFN---DTNFVMQFSKKIRSLATAKFPAK---V-PMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAAS 381 (560)
Q Consensus 309 ~~~~p~~~~~~~~---~~~~~~~~~~~l~~~~~~~~p~~---~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (560)
. | ..+... +......+...+.+....+.+.. . ....++++.+...... .+| +..|+
T Consensus 305 --~-p--~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g-~~~w~ 367 (539)
T PLN02835 305 --L-P--ALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL-----------ING-KQRYA 367 (539)
T ss_pred --C-C--CCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccc-----------cCC-eEEEE
Confidence 1 2 111110 00000000001111111111100 0 0112333333221110 022 46799
Q ss_pred ecceeccCCchhhhHHhhccCCCCcccCCC-CCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCC
Q 008592 382 VNNVSFVQPNVALLQAHFFNRSKGVYTTDF-PANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAES 460 (560)
Q Consensus 382 in~~~~~~p~~~~l~~~~~~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~ 460 (560)
+|+++|..|+.++|.+.+.... |.+.... ...++ +...+.++.++.++.|++|||+|+|.. ...
T Consensus 368 iN~~s~~~p~~P~L~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~ 432 (539)
T PLN02835 368 VNGVSYVNSDTPLKLADYFGIP-GVFSVNSIQSLPS-----------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTM 432 (539)
T ss_pred ECCcccCCCCCChhhhhhhcCC-CccccCccccCCC-----------CCccccCCeEEEcCCCCEEEEEEECCC---CCC
Confidence 9999999888888776665432 4443221 11111 111234578899999999999999964 469
Q ss_pred CceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEE
Q 008592 461 HPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIV 540 (560)
Q Consensus 461 HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V 540 (560)
||||||||+||||++|.|.|+.. ....+|+.||++||||.|+++||++|||++||||+|+|||||++|+..||+.+|.|
T Consensus 433 HP~HLHGh~F~Vlg~G~g~~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V 511 (539)
T PLN02835 433 QSWHLDGYDFWVVGYGSGQWTPA-KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRV 511 (539)
T ss_pred CCCCCCCccEEEEeccCCCCCcc-cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEE
Confidence 99999999999999999988764 34567899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCC
Q 008592 541 NDGKGPKQKLPPPPSDLPKC 560 (560)
Q Consensus 541 ~~~~~~~~~~~~~p~~~~~c 560 (560)
+++.+..++++++|.++|+|
T Consensus 512 ~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 512 WNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred ccCCCccccccCCCcccccc
Confidence 99999999999999999999
No 6
>PLN02991 oxidoreductase
Probab=100.00 E-value=2.8e-98 Score=794.70 Aligned_cols=474 Identities=28% Similarity=0.502 Sum_probs=377.7
Q ss_pred cCceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCc
Q 008592 34 EGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQ 113 (560)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq 113 (560)
++.+++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|.+++|+||+++ ||
T Consensus 25 ~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-tQ 103 (543)
T PLN02991 25 EDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-TT 103 (543)
T ss_pred cCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-CC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred cccCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHHh
Q 008592 114 CPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQ 192 (560)
Q Consensus 114 ~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 192 (560)
|||+||++|+|+|++++|+||||||+|.+.|+ +||+|+|||++++.++.++..+++|++|+|+||+++....+... ..
T Consensus 104 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~-~~ 182 (543)
T PLN02991 104 CPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ-LD 182 (543)
T ss_pred CccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH-hh
Confidence 99999999999999867899999999999888 79999999999876666666678899999999999987665433 33
Q ss_pred cCCCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeCCCccCC-------
Q 008592 193 TGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKS------- 265 (560)
Q Consensus 193 ~~~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~p------- 265 (560)
.+..+..+|++|||||.. .++++|++||+|||||||+|..+.+.|+|+||+|+|||+||++++|
T Consensus 183 ~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~ 253 (543)
T PLN02991 183 NGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLD 253 (543)
T ss_pred cCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEE
Confidence 444456789999999953 3579999999999999999999999999999999999999999988
Q ss_pred -------------CCCCceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCchh--hhhhc
Q 008592 266 -------------KAPNANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPLLKPAAILPKFNDTNF--VMQFS 330 (560)
Q Consensus 266 -------------~~~~~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~ 330 (560)
+|+.++|||++..+... ......|||+|++.......+ . | ..+....... .....
T Consensus 254 i~~GQRydvlv~a~~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~~~---~-p--~~p~~~~~~~~~~~~~~ 323 (543)
T PLN02991 254 VHVGQSYSVLITADQPAKDYYIVVSSRFTS----KILITTGVLHYSNSAGPVSGP---I-P--DGPIQLSWSFDQARAIK 323 (543)
T ss_pred EcCCcEEEEEEECCCCCCcEEEEEeeccCC----CCcceEEEEEeCCCCCCCCCC---C-C--CCCccccccccchhhhh
Confidence 45678899998754321 234578999999864211111 1 2 1111000000 00111
Q ss_pred ccccccccCCCCCCCCCC--------cceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceeccCCchhhhHHhhccC
Q 008592 331 KKIRSLATAKFPAKVPMK--------VDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQPNVALLQAHFFNR 402 (560)
Q Consensus 331 ~~l~~~~~~~~p~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~ 402 (560)
..+.+ ..+...|.. .++.+.+...... + + .++.|++|+++|..|++++|.+++...
T Consensus 324 ~~l~p----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------~---~-g~~~~~iN~~s~~~p~~p~L~~~~~~~ 387 (543)
T PLN02991 324 TNLTA----SGPRPNPQGSYHYGKINITRTIRLANSAGN--------I---E-GKQRYAVNSASFYPADTPLKLADYFKI 387 (543)
T ss_pred hcccC----CCCCCCCCccccccccccceeEEEeecccc--------c---C-ceEEEEECCCccCCCCCChhhhhhhcc
Confidence 12221 112222222 1222222211110 1 2 256899999999999889988877755
Q ss_pred CCCcccCC-CCCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCC
Q 008592 403 SKGVYTTD-FPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFD 481 (560)
Q Consensus 403 ~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~ 481 (560)
+ |.+..+ +++.+|.. .....+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|+
T Consensus 388 ~-g~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~ 452 (543)
T PLN02991 388 A-GVYNPGSIPDQPTNG-----------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWS 452 (543)
T ss_pred c-CccccccccccCCCC-----------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCC
Confidence 4 666544 44443321 0123466789999999999999964 369999999999999999999998
Q ss_pred CCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCCCCCCCCCCCCCCCCCCC
Q 008592 482 PNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDGKGPKQKLPPPPSDLPKC 560 (560)
Q Consensus 482 ~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 560 (560)
+. +...+|+.||++|||+.|+++||++|||++||||+|+|||||..|+..||..++.|+++.+..+++++||.++|+|
T Consensus 453 ~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 453 AA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred cc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 76 4567999999999999999999999999999999999999999999999999999999999999999999999999
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=5.9e-97 Score=786.17 Aligned_cols=479 Identities=28% Similarity=0.474 Sum_probs=367.5
Q ss_pred cCceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCc
Q 008592 34 EGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQ 113 (560)
Q Consensus 34 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq 113 (560)
.+++|+|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||++|.+++|+||+++ ||
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQ 101 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TN 101 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-Cc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHHh
Q 008592 114 CPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQ 192 (560)
Q Consensus 114 ~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 192 (560)
|||+||++|+|+|++++|+||||||||.+.|+ +||+|+|||+++++.+.+++..++|++|+|+||++.+...+.. ...
T Consensus 102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~~ 180 (545)
T PLN02168 102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRA-SLD 180 (545)
T ss_pred CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHh-hhh
Confidence 99999999999999866899999999999988 8999999999987766666667889999999999987655433 223
Q ss_pred cCCCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeCCCccCC-------
Q 008592 193 TGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKS------- 265 (560)
Q Consensus 193 ~~~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~p------- 265 (560)
.+.....+|.+||||+.. ..++++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|
T Consensus 181 ~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~ 252 (545)
T PLN02168 181 NGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLD 252 (545)
T ss_pred cCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEE
Confidence 333345789999999963 23589999999999999999999999999999999999999999998
Q ss_pred -------------CCCC-c---eEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCchhhhh
Q 008592 266 -------------KAPN-A---NFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPLLKPAAILPKFNDTNFVMQ 328 (560)
Q Consensus 266 -------------~~~~-~---~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 328 (560)
++.. | +|||++.....+ ....+.|+|+|++...... .+ . | ..+...+.....+
T Consensus 253 i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~--~p-~-p--~~p~~~~~~~~~~ 322 (545)
T PLN02168 253 IHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLDPV--GP-L-P--LAPALHDYFSSVE 322 (545)
T ss_pred EcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCCCC--CC-C-C--CCCcccccccccc
Confidence 2222 3 799988753322 1356789999987643211 11 1 2 2233332211111
Q ss_pred hcccccccccCCCCCCCCCC--------cceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceeccCCchhhhHHhhc
Q 008592 329 FSKKIRSLATAKFPAKVPMK--------VDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQPNVALLQAHFF 400 (560)
Q Consensus 329 ~~~~l~~~~~~~~p~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~ 400 (560)
....++....+..+...|.. .+..+.+.... . .+ + ..+.|++|+++|..|++|++.+++.
T Consensus 323 ~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~------~~---~-g~~~~~iN~~s~~~p~~P~l~~~~~ 390 (545)
T PLN02168 323 QALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M------LS---S-GKLRYTINGVSFVYPGTPLKLVDHF 390 (545)
T ss_pred hhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c------cc---C-ceEEEEECCCccCCCCCchhhhhhc
Confidence 11111111111111122211 12222211100 0 00 2 2567999999999999888876655
Q ss_pred cCCCCcccC-CCCCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCC
Q 008592 401 NRSKGVYTT-DFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGN 479 (560)
Q Consensus 401 ~~~~g~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~ 479 (560)
+++ +.+.. +++..+|.. ....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.
T Consensus 391 ~~~-~~~~~~~~~~~p~~~-----------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~ 455 (545)
T PLN02168 391 QLN-DTIIPGMFPVYPSNK-----------TPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGA 455 (545)
T ss_pred ccc-cccccCCCccCCCcC-----------ccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCC
Confidence 433 22222 244433310 0112467889999999999999964 4699999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCCCC------CCCCCCCC
Q 008592 480 FDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDGKG------PKQKLPPP 553 (560)
Q Consensus 480 ~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~------~~~~~~~~ 553 (560)
|++.. ...+|+.||++|||+.|+++||++|||++||||+|+|||||.+|...||.+.++|+++.+ ..++++++
T Consensus 456 ~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~ 534 (545)
T PLN02168 456 WSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPI 534 (545)
T ss_pred CCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCC
Confidence 98653 457899999999999999999999999999999999999999988898888888864433 25678899
Q ss_pred CCCCCCC
Q 008592 554 PSDLPKC 560 (560)
Q Consensus 554 p~~~~~c 560 (560)
|+++++|
T Consensus 535 P~~~~~c 541 (545)
T PLN02168 535 PGNVIRC 541 (545)
T ss_pred Chhhccc
Confidence 9999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-96 Score=776.02 Aligned_cols=510 Identities=48% Similarity=0.878 Sum_probs=443.4
Q ss_pred hhhccCceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCC
Q 008592 30 LAKHEGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPA 109 (560)
Q Consensus 30 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~ 109 (560)
..++++.++.|+|+++...++++|.+++++++||++|||+|++++||+|.|+|.|+++++++|||||++|..++|+|| +
T Consensus 21 ~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG-~ 99 (563)
T KOG1263|consen 21 FSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG-V 99 (563)
T ss_pred HhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-C
Confidence 445578999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcCccccCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeecccc-ChHHHH
Q 008592 110 YVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKA-DTETII 187 (560)
Q Consensus 110 ~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~~~ 187 (560)
++|||||+||++|+|+|++++|.||||||+|...|+ +|++|+|||+++...++|++..++|++|+++||+.+ ....+.
T Consensus 100 ~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~ 179 (563)
T KOG1263|consen 100 YITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLK 179 (563)
T ss_pred ccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHH
Confidence 999999999999999999988999999999999999 799999999999888888888999999999999996 777766
Q ss_pred HHHHhcCCCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeCCCccCC--
Q 008592 188 NEAMQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKS-- 265 (560)
Q Consensus 188 ~~~~~~~~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~p-- 265 (560)
......+..+..+|..+|||+.+..++| .++++|++||+|||||+|+|....+.|+|++|+|+||++||.+++|
T Consensus 180 ~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~ 255 (563)
T KOG1263|consen 180 NFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFT 255 (563)
T ss_pred HhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeee
Confidence 6655566656568999999999988999 6899999999999999999999999999999999999999999999
Q ss_pred ------------------CCCCceEEEEeccCCCCC-CcCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 008592 266 ------------------KAPNANFLIAARPYATGP-ASFDNTTTAGVLEYDQPNGITTKNLPLLKPAAILPKFNDTNFV 326 (560)
Q Consensus 266 ------------------~~~~~~y~i~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 326 (560)
+|.+++|+|++.++.+.. ..+ +....++++|.+.........+.. + .++...+...+
T Consensus 256 ~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~-~--~~~~~~~~~~s 331 (563)
T KOG1263|consen 256 TDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIY-P--FLPPGNDTAWS 331 (563)
T ss_pred eceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCccc-c--cCCcccCchhh
Confidence 567779999999877643 233 677899999998422211111211 2 34555566666
Q ss_pred hhhcccccccccCCCCCCCCCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceeccCCchh-hhHHhhccCCCC
Q 008592 327 MQFSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQPNVA-LLQAHFFNRSKG 405 (560)
Q Consensus 327 ~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~-~l~~~~~~~~~g 405 (560)
..+...++.+.....+..+|...++...++++.+...++.+. .++.+..+++|+.+|..|+++ ++..++..+. |
T Consensus 332 ~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~-~ 406 (563)
T KOG1263|consen 332 TYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KNNGKLRASINNISFVTPKTPSLLAAYFKNIP-G 406 (563)
T ss_pred hhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CCCcEEEEEEcceEEECCCCchhhhhhhccCC-c
Confidence 667777787777777888898888888888877766654211 245677899999999999984 5666666555 7
Q ss_pred cccCCCCCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCC
Q 008592 406 VYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKD 485 (560)
Q Consensus 406 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~ 485 (560)
.+..+++..|+..+++++ .+.++.++.++.+++||++++|.+......||||||||.|||++.|.|.|++..+
T Consensus 407 ~~~~d~p~~P~~~~~~~~-------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d 479 (563)
T KOG1263|consen 407 YFTNDFPDKPPIKFDYTG-------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKD 479 (563)
T ss_pred cccCccCCCCccccCCcc-------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcC
Confidence 778889999988888765 3568999999999999999999987677889999999999999999999999545
Q ss_pred C-CCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCCCCCCCCCCCCCCCCCCC
Q 008592 486 P-AKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDGKGPKQKLPPPPSDLPKC 560 (560)
Q Consensus 486 ~-~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 560 (560)
. ..+|+.+|+.||||.|+||||++|||.|||||+|+||||+.+|...||.+.|.|.++.+..+++.+||.+.++|
T Consensus 480 ~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 480 PRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred hhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 5 78999999999999999999999999999999999999999999999999999999999999999999999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=3.9e-91 Score=750.43 Aligned_cols=492 Identities=30% Similarity=0.555 Sum_probs=357.3
Q ss_pred CceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCC-cCeeEEecCcccCCCcCCCCCCCcCc
Q 008592 35 GITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-YNVTIHWHGVRQLRSGWADGPAYVTQ 113 (560)
Q Consensus 35 ~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~tq 113 (560)
+++|+|+|++++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++.+++|+||++++||
T Consensus 21 ~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq 100 (574)
T PLN02191 21 AAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQ 100 (574)
T ss_pred cceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcccc
Confidence 57899999999999999999999999999999999999999999999999997 78999999999999999999999999
Q ss_pred cccCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHHh
Q 008592 114 CPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQ 192 (560)
Q Consensus 114 ~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 192 (560)
|+|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+...++ .+|+|++|+|+||++............
T Consensus 101 ~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 178 (574)
T PLN02191 101 CAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSS 178 (574)
T ss_pred CCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhcc
Confidence 999999999999998 7899999999999988 8999999999754432222 358899999999999875543222211
Q ss_pred c-CCCCCCCceEEEcCcCCCCCCCCC--------------------CceeeEEEccCCEEEEEEEecCCCCeEEEEEcCC
Q 008592 193 T-GGAPNISDAFTINGLPGPFYNCAA--------------------KDTFKLKVTPGKTYLLRMINAALNDELFFSIANH 251 (560)
Q Consensus 193 ~-~~~~~~~d~~lvNG~~~~~~~~~~--------------------~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh 251 (560)
. ......++++||||+.. +.|.. ....+++|++||+|||||||+|+.+.+.|+||||
T Consensus 179 ~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH 256 (574)
T PLN02191 179 KPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGH 256 (574)
T ss_pred CCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCC
Confidence 1 11224578999999863 34421 1223699999999999999999999999999999
Q ss_pred eEEEEEeCCCccCC--------------------CCCC-ceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCC
Q 008592 252 TLTIVETDAVYAKS--------------------KAPN-ANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPL 310 (560)
Q Consensus 252 ~~~via~DG~~v~p--------------------~~~~-~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~ 310 (560)
+|+|||+||++++| +|.+ ++|||++.....+ .......|+|+|.+....... ...
T Consensus 257 ~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~---~~~~~~~ail~Y~~~~~~~~p-~~~ 332 (574)
T PLN02191 257 KLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRK---PNTTQALTILNYVTAPASKLP-SSP 332 (574)
T ss_pred eEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccC---CCCCCceEEEEECCCCCCCCC-CCC
Confidence 99999999999998 4444 5899998754322 122235699999876432100 000
Q ss_pred CCCCCCCCCCCCchhhhhhcccccccccCCCCCCCCC-CcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceeccC
Q 008592 311 LKPAAILPKFNDTNFVMQFSKKIRSLATAKFPAKVPM-KVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQ 389 (560)
Q Consensus 311 ~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~ 389 (560)
. | ..+.+.+......+ ....+.....+ ..|. ..+..+.+... .. ......|++|+.+|..
T Consensus 333 ~-~--~~p~~~~~~~~~~~--~~~~~~~~~~~-~~p~~~~~~~~~~~~~--~~-----------~~~~~~~~~n~~s~~~ 393 (574)
T PLN02191 333 P-P--VTPRWDDFERSKNF--SKKIFSAMGSP-SPPKKYRKRLILLNTQ--NL-----------IDGYTKWAINNVSLVT 393 (574)
T ss_pred C-C--CCCcccccchhhcc--cccccccccCC-CCCCcccceEEEeccc--ce-----------eCCeEEEEECcccCcC
Confidence 0 1 12222222111111 11111110001 1121 12343333211 10 1123469999999998
Q ss_pred CchhhhHHhhccCCCCcccCCCCCCC-CccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcC---ccCCCceee
Q 008592 390 PNVALLQAHFFNRSKGVYTTDFPANP-PFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSII---VAESHPLHL 465 (560)
Q Consensus 390 p~~~~l~~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~---~~~~HP~Hl 465 (560)
|+.+.|.+.+.+.. +.+..+.+... +..|+..+... ....+.++.++.++.|++|||+|+|.... ....|||||
T Consensus 394 p~~P~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HL 471 (574)
T PLN02191 394 PATPYLGSVKYNLK-LGFNRKSPPRSYRMDYDIMNPPP-FPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHL 471 (574)
T ss_pred CCcchHHHHhhccC-cccccCCCcccccccccccCCCc-cccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEe
Confidence 88888777655432 33322222111 11121111100 00123456789999999999999996411 257899999
Q ss_pred cCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCCCC
Q 008592 466 HGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDGKG 545 (560)
Q Consensus 466 HG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~ 545 (560)
|||+||||++|.|.|++......+|+.||++|||+.|+++||++|||++||||+|+|||||+||+..||+++|.. .. +
T Consensus 472 HGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e-~~-~ 549 (574)
T PLN02191 472 HGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAE-GL-N 549 (574)
T ss_pred CCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEec-Ch-h
Confidence 999999999999999875444578999999999999999999999999999999999999999999999999953 22 2
Q ss_pred CCCCCCCCCCCCCCC
Q 008592 546 PKQKLPPPPSDLPKC 560 (560)
Q Consensus 546 ~~~~~~~~p~~~~~c 560 (560)
.++.+|..+++|
T Consensus 550 ---~~~~~p~~~~~C 561 (574)
T PLN02191 550 ---RIGKIPDEALGC 561 (574)
T ss_pred ---hccCCCcchhhh
Confidence 334467888999
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=6.5e-91 Score=750.73 Aligned_cols=502 Identities=32% Similarity=0.571 Sum_probs=371.8
Q ss_pred hhhhhhhhccCceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCC-CcCeeEEecCcccCCCc
Q 008592 25 LSELALAKHEGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNV-KYNVTIHWHGVRQLRSG 103 (560)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~ 103 (560)
++.++.+.+.+.+|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|++ +++++|||||+++.+++
T Consensus 12 ~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~ 91 (566)
T PLN02604 12 FSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTP 91 (566)
T ss_pred HHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCc
Confidence 34555556678999999999999999999999999999999999999999999999999998 58999999999999999
Q ss_pred CCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccC
Q 008592 104 WADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKAD 182 (560)
Q Consensus 104 ~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~ 182 (560)
|+||+++++||+|+||++++|+|++ +++||||||||...|+ +||+|+|||+++.++..++ .+++|.+|+|+||+++.
T Consensus 92 ~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~ 169 (566)
T PLN02604 92 WFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKS 169 (566)
T ss_pred cccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCC
Confidence 9999999999999999999999998 7999999999998888 8999999999886544444 35889999999999998
Q ss_pred hHHHHHHHHhc-CCCCCCCceEEEcCcCCCCCCCCC-----------------CceeeEEEccCCEEEEEEEecCCCCeE
Q 008592 183 TETIINEAMQT-GGAPNISDAFTINGLPGPFYNCAA-----------------KDTFKLKVTPGKTYLLRMINAALNDEL 244 (560)
Q Consensus 183 ~~~~~~~~~~~-~~~~~~~d~~lvNG~~~~~~~~~~-----------------~~~~~~~v~~g~~~rlRliN~~~~~~~ 244 (560)
..+........ ......+++.+|||+.. +.|.. ...+.+++++|++|||||||+|..+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~ 247 (566)
T PLN02604 170 TYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSAL 247 (566)
T ss_pred HHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceE
Confidence 76654432211 11123579999999963 44431 134579999999999999999999999
Q ss_pred EEEEcCCeEEEEEeCCCccCC--------------------CCCC-ceEEEEeccCCCCCCcCCCcceEEEEEecCCCCC
Q 008592 245 FFSIANHTLTIVETDAVYAKS--------------------KAPN-ANFLIAARPYATGPASFDNTTTAGVLEYDQPNGI 303 (560)
Q Consensus 245 ~~~i~gh~~~via~DG~~v~p--------------------~~~~-~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~ 303 (560)
.|+||||+|+|||+||++++| ++.+ ++|||++.....+ .+...+.|+|+|++....
T Consensus 248 ~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~---~~~~~~~aIL~Y~~~~~~ 324 (566)
T PLN02604 248 SFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRN---NTTPPGLAIFNYYPNHPR 324 (566)
T ss_pred EEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCC---CCCcceeEEEEECCCCCC
Confidence 999999999999999999998 3444 4799987643222 123567899999965321
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhcccccccccCCCCCCCCCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeec
Q 008592 304 TTKNLPLLKPAAILPKFNDTNFVMQFSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVN 383 (560)
Q Consensus 304 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 383 (560)
...+...| ..+.+++..........+..+.. .+...+...++++.+...... .+..+.|++|
T Consensus 325 --~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~------------~~~~~~w~in 386 (566)
T PLN02604 325 --RSPPTVPP--SGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE------------VNGYRRWSVN 386 (566)
T ss_pred --CCCCCCCC--CCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc------------cCCeEEEEEC
Confidence 10111101 11122221111110011111111 111123344555554322111 1124679999
Q ss_pred ceeccCCchhhhHHhhccCCCCcccCCCCCCCCccccCCC---CC-CCCccccCCcEEEEecCCCEEEEEEeeCCcC---
Q 008592 384 NVSFVQPNVALLQAHFFNRSKGVYTTDFPANPPFKFNYTG---TP-PSNIMVSSGTKVVVLPFNASVEVVMQDTSII--- 456 (560)
Q Consensus 384 ~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~---~~-~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~--- 456 (560)
+++|..|+.+.|...+.... +.+..+. ++..+.+.. .. ..+...+.+..++.++.|++||++|+|....
T Consensus 387 ~~~~~~p~~p~L~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~ 462 (566)
T PLN02604 387 NVSFNLPHTPYLIALKENLT-GAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNAN 462 (566)
T ss_pred cccCCCCCCchhHhhhhcCC-CcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCC
Confidence 99999888888777665332 4332111 111111100 00 0011123456789999999999999996421
Q ss_pred ccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEE
Q 008592 457 VAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKM 536 (560)
Q Consensus 457 ~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~ 536 (560)
....||||||||+||||++|.|.|++..+...+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||++
T Consensus 463 ~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~ 542 (566)
T PLN02604 463 NSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGV 542 (566)
T ss_pred CCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEE
Confidence 24689999999999999999999987766668999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCC
Q 008592 537 AWIVNDGKGPKQKLPPPPSDLPKC 560 (560)
Q Consensus 537 ~~~V~~~~~~~~~~~~~p~~~~~c 560 (560)
+|.+. .++++.+|..+++|
T Consensus 543 v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 543 VFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred EEeeC-----hhhccCCCCCcCcc
Confidence 99653 23566788899999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.1e-90 Score=744.90 Aligned_cols=491 Identities=32% Similarity=0.587 Sum_probs=362.0
Q ss_pred eEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCC-cCeeEEecCcccCCCcCCCCCCCcCccc
Q 008592 37 TRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-YNVTIHWHGVRQLRSGWADGPAYVTQCP 115 (560)
Q Consensus 37 ~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~tq~~ 115 (560)
+|+|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||+++.+++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999995 8999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHHhcC
Q 008592 116 IQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTG 194 (560)
Q Consensus 116 i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~ 194 (560)
|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.++..++ .+|+|++|+|+||+++...+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7899999999998888 8999999999886544444 35889999999999988765433322111
Q ss_pred -CCCCCCceEEEcCcCCCCCCCCCC-------------------ceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEE
Q 008592 195 -GAPNISDAFTINGLPGPFYNCAAK-------------------DTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLT 254 (560)
Q Consensus 195 -~~~~~~d~~lvNG~~~~~~~~~~~-------------------~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~ 254 (560)
.....+++++|||+.. +.|... ....++|++|++|||||||+|..+.+.|+||+|+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1123568999999953 344211 224689999999999999999999999999999999
Q ss_pred EEEeCCCccCC--------------------CCCC-ceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCCCCC
Q 008592 255 IVETDAVYAKS--------------------KAPN-ANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPLLKP 313 (560)
Q Consensus 255 via~DG~~v~p--------------------~~~~-~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~p 313 (560)
|||+||++++| ++.+ ++|||++...... .......|+|+|.+...... ++...|
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~--p~~~~~ 311 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRL--PPTPPP 311 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCC--CCCCCC
Confidence 99999999998 3333 4799988743321 22345789999987532210 001001
Q ss_pred CCCCCCCCCchhhhhhcccccccccCCCCCCCCCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceeccCCchh
Q 008592 314 AAILPKFNDTNFVMQFSKKIRSLATAKFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQPNVA 393 (560)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ 393 (560)
..+.+.+......+ .+..+.... ....|...++++.+...... ....+.|++|+.+|..|+.+
T Consensus 312 --~~p~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~n~~s~~~p~~p 374 (541)
T TIGR03388 312 --VTPAWDDFDRSKAF--SLAIKAAMG-SPKPPETSDRRIVLLNTQNK------------INGYTKWAINNVSLTLPHTP 374 (541)
T ss_pred --CCCCccccchhhcc--chhhhcccc-CCCCCCCCCcEEEEeccCcc------------cCceEEEEECcccCCCCCcc
Confidence 22333322111101 111111101 11223345666554322110 11245699999999988888
Q ss_pred hhHHhhccCCCCcccCCCC-CCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcC---ccCCCceeecCcc
Q 008592 394 LLQAHFFNRSKGVYTTDFP-ANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSII---VAESHPLHLHGFN 469 (560)
Q Consensus 394 ~l~~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~---~~~~HP~HlHG~~ 469 (560)
.|...+.+.. +.+..+.+ ...+..|+..... .+...+.++.++.++.|++||++|+|...+ ....||||||||+
T Consensus 375 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~ 452 (541)
T TIGR03388 375 YLGSLKYNLL-NAFDQKPPPENYPRDYDIFKPP-PNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHD 452 (541)
T ss_pred HHHHHhhcCC-ccccCCCCcccccccccccCCC-cccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCc
Confidence 8777654332 22221110 0111111111100 011234467789999999999999996421 2468999999999
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCCCCCCCC
Q 008592 470 FFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDGKGPKQK 549 (560)
Q Consensus 470 F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~ 549 (560)
||||++|.|.|+...+...+|+.||++|||+.|+++||++|||++||||.|+|||||+||+..||+++|.+. .++
T Consensus 453 F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~~ 527 (541)
T TIGR03388 453 FWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VEK 527 (541)
T ss_pred eEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----ccc
Confidence 999999999998665556799999999999999999999999999999999999999999999999999653 235
Q ss_pred CCCCCCCCCCC
Q 008592 550 LPPPPSDLPKC 560 (560)
Q Consensus 550 ~~~~p~~~~~c 560 (560)
++.+|+.+++|
T Consensus 528 ~~~~P~~~~~C 538 (541)
T TIGR03388 528 VGKLPKEALGC 538 (541)
T ss_pred cCCCCccccCC
Confidence 66689999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2.6e-88 Score=726.35 Aligned_cols=472 Identities=28% Similarity=0.480 Sum_probs=350.4
Q ss_pred EEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCC-cCeeEEecCcccCCCcCCCCCCCcCcccc
Q 008592 38 RHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-YNVTIHWHGVRQLRSGWADGPAYVTQCPI 116 (560)
Q Consensus 38 ~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~tq~~i 116 (560)
-.|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++..++|+||+|++|||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46999999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEEc-ccCcceeEeeccccccccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHHhcC-
Q 008592 117 QTGQSYVYNFTVT-GQRGTLFWHAHISWLRATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTG- 194 (560)
Q Consensus 117 ~pG~~~~Y~~~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~- 194 (560)
+||++|+|+|+++ +++||||||||...|+.||+|+|||++++..++. +|+|++|+|+||+++...++........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~~---~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPYK---YDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCCC---ccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999974 5899999999999999889999999987654443 4889999999999998877654433222
Q ss_pred CCCCCCceEEEcCcCCCCCC---CC---CCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCe-EEEEEeCCCccCC--
Q 008592 195 GAPNISDAFTINGLPGPFYN---CA---AKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHT-LTIVETDAVYAKS-- 265 (560)
Q Consensus 195 ~~~~~~d~~lvNG~~~~~~~---~~---~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~v~p-- 265 (560)
.....+++++||||..+... ++ ....+.++|++||+|||||||+|..+.+.|+|++|+ |+|||+||++++|
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 11245689999999654320 00 113578999999999999999999999999999999 9999999999999
Q ss_pred ------------------CCC-------CceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 008592 266 ------------------KAP-------NANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPLLKPAAILPKF 320 (560)
Q Consensus 266 ------------------~~~-------~~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~p~~~~~~~ 320 (560)
++. +++|||++...... +.....|+|+|.+.........+.. + .++..
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~~~~~~p~~-~--~~~~~ 318 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKASKLPSVPET-P--PLPLP 318 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCCCCCCCCCCC-C--CCCcc
Confidence 222 37899998643221 2345789999986532211100111 1 11110
Q ss_pred CCchhhhhhcccccccccCCCC-CCCCCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceeccC--CchhhhHH
Q 008592 321 NDTNFVMQFSKKIRSLATAKFP-AKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQ--PNVALLQA 397 (560)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~--p~~~~l~~ 397 (560)
....... ...+.++.....+ ...+..+++++.+.+++.... ....+.|++|+++|.. ++.|+|..
T Consensus 319 ~~~~~~~--~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----------~~g~~~~~~N~~s~~~~~~~~P~L~~ 386 (538)
T TIGR03390 319 NSTYDWL--EYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----------LNGRVAWLQNGLSWTESVRQTPYLVD 386 (538)
T ss_pred Ccchhhh--heeeEecCccccCCCCCCCcCceEEEEEccccccc----------cCCeEEEEECCcccCCCCCCCchHHH
Confidence 1100000 1123333211000 011334677776666543210 1235679999999985 67787776
Q ss_pred hhccCCCCcccCCCCCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcC-----ccCCCceeecCcceEE
Q 008592 398 HFFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSII-----VAESHPLHLHGFNFFV 472 (560)
Q Consensus 398 ~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~-----~~~~HP~HlHG~~F~V 472 (560)
.+.+ +. +..++ |+.. . .......++.++.++.|++|||+|+|.... ....||||||||+|||
T Consensus 387 ~~~~---~~-----~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~v 453 (538)
T TIGR03390 387 IYEN---GL-----PATPN--YTAA--L-ANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYD 453 (538)
T ss_pred HhcC---CC-----CcCCC--cccc--c-ccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEE
Confidence 5532 10 00010 1100 0 000012345678899999999999996421 2479999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCCccceeEeC----------CCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcC
Q 008592 473 VAQGFGNFDPNKDPAKFNLVDPAERNTVGVP----------SGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVND 542 (560)
Q Consensus 473 l~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp----------p~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~ 542 (560)
|++|.|.|++......+++.||++|||+.|+ +++|++|||++||||+|+|||||+||+..||+++|.|.+
T Consensus 454 lg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 454 IGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred EcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence 9999999987654456788999999999996 789999999999999999999999999999999999866
Q ss_pred CC
Q 008592 543 GK 544 (560)
Q Consensus 543 ~~ 544 (560)
.+
T Consensus 534 ~~ 535 (538)
T TIGR03390 534 AE 535 (538)
T ss_pred hH
Confidence 43
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=3.3e-74 Score=615.99 Aligned_cols=411 Identities=25% Similarity=0.419 Sum_probs=292.6
Q ss_pred EEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccC
Q 008592 38 RHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQ 117 (560)
Q Consensus 38 ~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~ 117 (560)
++|+|++++..++++|..+.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++++. +||+|++|||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999998754 9999999999999
Q ss_pred CCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHHh----
Q 008592 118 TGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQ---- 192 (560)
Q Consensus 118 pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~---- 192 (560)
||++|+|+|++ .++||||||||...|. .||+|+|||++++++++. +|+|++|+|+||++.+..+++..+..
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~~---~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPVR---ADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccCC---CCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999998 7899999999998887 899999999987554443 48999999999998776665433220
Q ss_pred -----------------cCCC----------------C------CCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEE
Q 008592 193 -----------------TGGA----------------P------NISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLL 233 (560)
Q Consensus 193 -----------------~~~~----------------~------~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rl 233 (560)
.|.. . .....+||||+..+ ..+++.+++|++|||
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~-------~~~~~~v~~G~rvRL 272 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPA-------GNWTGLFRPGEKVRL 272 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCC-------CCceEEECCCCEEEE
Confidence 0100 0 00124789998532 345789999999999
Q ss_pred EEEecCCCCeEEEEEcCCeEEEEEeCCCccCCCC-------CCceEEEEeccCCCCCC-----cCC-CcceEEEEEecCC
Q 008592 234 RMINAALNDELFFSIANHTLTIVETDAVYAKSKA-------PNANFLIAARPYATGPA-----SFD-NTTTAGVLEYDQP 300 (560)
Q Consensus 234 RliN~~~~~~~~~~i~gh~~~via~DG~~v~p~~-------~~~~y~i~~~~~~~~~~-----~~~-~~~~~ail~y~~~ 300 (560)
||||+|+.+.+.|+|+||+|+|||+||++++|.+ +.+||.+.+....+... ..+ .....++|.+...
T Consensus 273 R~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~~g~~~i~a~~~~~~~~~~~~l~~~~~ 352 (587)
T TIGR01480 273 RFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTGDDAFTIFAQDSDRTGYARGTLAVRLG 352 (587)
T ss_pred EEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCCCceEEEEEEecCCCceEEEEEecCCC
Confidence 9999999999999999999999999999998832 34567766653222100 111 2345677877654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchh-h---------hhh--cc--c---------------c------------------
Q 008592 301 NGITTKNLPLLKPAAILPKFNDTNF-V---------MQF--SK--K---------------I------------------ 333 (560)
Q Consensus 301 ~~~~~~~~~~~~p~~~~~~~~~~~~-~---------~~~--~~--~---------------l------------------ 333 (560)
.. .+.+.++|. ......+... . ... .. + +
T Consensus 353 ~~---~~~p~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (587)
T TIGR01480 353 LT---APVPALDPR-PLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLV 428 (587)
T ss_pred CC---CCCCCCCCc-cccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccc
Confidence 21 111212110 0000000000 0 000 00 0 0
Q ss_pred --------cccccC-------------------CCCCCCCCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeeccee
Q 008592 334 --------RSLATA-------------------KFPAKVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVS 386 (560)
Q Consensus 334 --------~~~~~~-------------------~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~ 386 (560)
..+..+ ..+...+...++.+.+.+.- +-.++.|++|+..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g--------------~m~~~~wtiNG~~ 494 (587)
T TIGR01480 429 DMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTG--------------NMERFAWSFDGEA 494 (587)
T ss_pred cccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcC--------------CCceeEEEECCcc
Confidence 000000 00000000112212111110 1123456666543
Q ss_pred ccCCchhhhHHhhccCCCCcccCCCCCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeec
Q 008592 387 FVQPNVALLQAHFFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLH 466 (560)
Q Consensus 387 ~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlH 466 (560)
|. ....+.++.|++|+|.+.|.+ .+.||||||
T Consensus 495 ~~---------------------------------------------~~~pl~v~~Gervri~l~N~t---~~~HpmHlH 526 (587)
T TIGR01480 495 FG---------------------------------------------LKTPLRFNYGERLRVVLVNDT---MMAHPIHLH 526 (587)
T ss_pred CC---------------------------------------------CCCceEecCCCEEEEEEECCC---CCCcceeEc
Confidence 21 112367999999999999976 489999999
Q ss_pred CcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEc
Q 008592 467 GFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVN 541 (560)
Q Consensus 467 G~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 541 (560)
|+.|+++..+ |. .+.++||+.|+||+++.++|+++|||.|+||||++.|++.|||..|+|.
T Consensus 527 G~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 527 GMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 9999998653 21 2457899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=3.4e-72 Score=596.54 Aligned_cols=420 Identities=18% Similarity=0.245 Sum_probs=271.4
Q ss_pred eEEEEEEEEEEEeeecCcee-EEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccc
Q 008592 37 TRHYKFHIKMQNITRLCQTK-SIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCP 115 (560)
Q Consensus 37 ~~~~~l~~~~~~~~~~g~~~-~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~ 115 (560)
...|+|++++...+.++..+ .+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++++. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 34699999999999887554 5999999999999999999999999999999999999999999876 99986 899
Q ss_pred cCCCCeEEEEEEEcccCcceeEeecccc----cc-ccceEeEEEeCCCCCCCCCCC--CCcceeEEeeeccccChHHHHH
Q 008592 116 IQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIIILPKQQASYPFPQ--PFEEVPIIFGEWWKADTETIIN 188 (560)
Q Consensus 116 i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 188 (560)
|.||++|+|+|++++++||||||+|.++ |. .||+|+|||+++++...+++. ..+|++|+|+||+++...++..
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 9999999999998656899999999864 33 799999999998765444443 3468999999999876654321
Q ss_pred HHH-hcCCCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEE-cCCeEEEEEeCCCcc-CC
Q 008592 189 EAM-QTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSI-ANHTLTIVETDAVYA-KS 265 (560)
Q Consensus 189 ~~~-~~~~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~p 265 (560)
... ........+|.++|||+.+| .+.++ +++|||||||+|+.+.+.|++ ++|+|+|||+||+++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~p----------~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIYP----------QHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCcccc----------eeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 111 01112346799999999754 45664 579999999999999999998 899999999999987 45
Q ss_pred CC-------CCceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCCCCCCCC--CCCCCCCCchhhhhhccccccc
Q 008592 266 KA-------PNANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNLPLLKPA--AILPKFNDTNFVMQFSKKIRSL 336 (560)
Q Consensus 266 ~~-------~~~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~l~~~ 336 (560)
.+ +.+||.+.+... ......++........... .....|. ..+... ...........+..+
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~--------~~~~~~l~~~~~~~~g~~~-~~~~~~~~~~~~~~~-~~~~~~~~P~~l~~~ 338 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTS--------DGKAFDLVTLPVSQMGMAL-APFDKPLPVLRIQPL-LISASGTLPDSLASL 338 (523)
T ss_pred cEeCeEEECccceEEEEEEcC--------CCceEEEEEecccCccccc-ccCCCceeEEEEecc-CcCCCCcCChhhccC
Confidence 21 335666665421 1111111111100000000 0000000 000000 000000000111111
Q ss_pred ccCCCCCCCCCCcceeEEEEeccCCc--------CCCCCCcccC-C---------CC------------Ce---e--eee
Q 008592 337 ATAKFPAKVPMKVDRRFFFTVGLGLS--------PCPQNQTCQG-P---------NN------------TK---L--AAS 381 (560)
Q Consensus 337 ~~~~~p~~~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~---------~~------------~~---~--~~~ 381 (560)
... +. ......+++.+.+..... ...+.....+ . .| .+ + .|+
T Consensus 339 ~~~--~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (523)
T PRK10965 339 PAL--PS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANK 415 (523)
T ss_pred CCC--Cc-ccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 100 00 000112333332210000 0000000000 0 00 00 0 023
Q ss_pred ecceeccCCchhhhHHhhccCCCCcccCCCCCCCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCC
Q 008592 382 VNNVSFVQPNVALLQAHFFNRSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESH 461 (560)
Q Consensus 382 in~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~H 461 (560)
||+++|. .....+.++.|++++|.|.|.+. .+.|
T Consensus 416 ING~~~~--------------------------------------------~~~~~~~~~~G~~e~w~i~N~~~--~~~H 449 (523)
T PRK10965 416 INGKAFD--------------------------------------------MNKPMFAAKKGQYERWVISGVGD--MMLH 449 (523)
T ss_pred CCCeECC--------------------------------------------CCCcceecCCCCEEEEEEEeCCC--CCcc
Confidence 3333221 11233678999999999999752 3689
Q ss_pred ceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe----cCceeeEEEeechhhhhcccEEE
Q 008592 462 PLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA----DNPGVWFMHCHLEVHTSWGLKMA 537 (560)
Q Consensus 462 P~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a----dnpG~w~~HCHil~H~d~GMm~~ 537 (560)
||||||++||||+++.. ......+.|||||.|++ +.+.|++++ +++|.||||||||+|||.|||..
T Consensus 450 p~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~ 519 (523)
T PRK10965 450 PFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLG 519 (523)
T ss_pred CeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccce
Confidence 99999999999999632 22234568999999988 666666555 56789999999999999999999
Q ss_pred EEEc
Q 008592 538 WIVN 541 (560)
Q Consensus 538 ~~V~ 541 (560)
|.|.
T Consensus 520 ~~V~ 523 (523)
T PRK10965 520 FTVS 523 (523)
T ss_pred eEeC
Confidence 9883
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=8.3e-71 Score=581.27 Aligned_cols=394 Identities=16% Similarity=0.199 Sum_probs=269.1
Q ss_pred EEEEEEEEEEeeecC-ceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccC
Q 008592 39 HYKFHIKMQNITRLC-QTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQ 117 (560)
Q Consensus 39 ~~~l~~~~~~~~~~g-~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~ 117 (560)
.++|++.......++ ..+.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++++. .+||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 378999999988885 5778999999999999999999999999999999999999999999876 477765 7899
Q ss_pred CCCeEEEEEEEcccCcceeEeecccc----cc-ccceEeEEEeCCCCCCCCCCC--CCcceeEEeeeccccChHHHHHHH
Q 008592 118 TGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIIILPKQQASYPFPQ--PFEEVPIIFGEWWKADTETIINEA 190 (560)
Q Consensus 118 pG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 190 (560)
||++|+|+|++.+++||||||+|.++ |. +||+|+|||+++.+.+.+++. ..+|++|+|+||+.+...+....
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 99999999998667999999999887 33 799999999998765555443 34599999999988765442211
Q ss_pred HhcCCCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEE-cCCeEEEEEeCCCcc-CCC--
Q 008592 191 MQTGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSI-ANHTLTIVETDAVYA-KSK-- 266 (560)
Q Consensus 191 ~~~~~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~v-~p~-- 266 (560)
........+|.++|||+.+ +.++|++| +|||||||+|+.+.+.|+| ++|+|+|||+||+++ +|.
T Consensus 201 -~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 1111234679999999965 36889875 7999999999999999999 899999999998776 552
Q ss_pred -----CCCceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCCCC-CCCCCCCCCCCCCCchhhhhhcc-cccccccC
Q 008592 267 -----APNANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTKNL-PLLKPAAILPKFNDTNFVMQFSK-KIRSLATA 339 (560)
Q Consensus 267 -----~~~~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~-~l~~~~~~ 339 (560)
.+.+||.+.+... ... .+....+......... ....+. ... .. .....+.. ...+....
T Consensus 269 ~~l~l~pGeR~dvlVd~~--------~~~--~~~l~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~ 334 (471)
T PRK10883 269 KQLSLAPGERREILVDMS--------NGD--EVSITAGEAAGIVDRLRGFFEPS-SIL--VS-TLVLTLRPTGLLPLVTD 334 (471)
T ss_pred CeEEECCCCeEEEEEECC--------CCc--eEEEECCCccccccccccccCCc-ccc--cc-ceeEEEEccccccCCCC
Confidence 2345666666531 111 1111111000000000 000000 000 00 00000000 00000000
Q ss_pred CCCC------CCCCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceeccCCchhhhHHhhccCCCCcccCCCCC
Q 008592 340 KFPA------KVPMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQPNVALLQAHFFNRSKGVYTTDFPA 413 (560)
Q Consensus 340 ~~p~------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~ 413 (560)
..|. ..+....++..+.++. . .|.||+.+|...
T Consensus 335 ~~p~~l~~~~~~~~~~~~~~~~~l~~----------------~--~~~INg~~~~~~----------------------- 373 (471)
T PRK10883 335 NLPMRLLPDEIMEGSPIRSREISLGD----------------D--LPGINGALWDMN----------------------- 373 (471)
T ss_pred cCChhhcCCCCCCCCCcceEEEEecC----------------C--cCccCCcccCCC-----------------------
Confidence 0000 0001122222222210 0 145666554211
Q ss_pred CCCccccCCCCCCCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCC
Q 008592 414 NPPFKFNYTGTPPSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVD 493 (560)
Q Consensus 414 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~ 493 (560)
...+.++.|++++|.+.|. +.|||||||+.|||++++.. .....+
T Consensus 374 ---------------------~~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~---------~~~~~~ 418 (471)
T PRK10883 374 ---------------------RIDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGA---------MPFPED 418 (471)
T ss_pred ---------------------cceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCC---------CCCccc
Confidence 1125678999999999873 58999999999999999532 111233
Q ss_pred CCccceeEeCCCCEEEEEEEecCce----eeEEEeechhhhhcccEEEEEEcC
Q 008592 494 PAERNTVGVPSGGWVAIRFLADNPG----VWFMHCHLEVHTSWGLKMAWIVND 542 (560)
Q Consensus 494 p~~rDTv~vpp~g~v~irf~adnpG----~w~~HCHil~H~d~GMm~~~~V~~ 542 (560)
..|||||.|+ +.++|+++++++| .||||||||+|||.|||.+|+|.+
T Consensus 419 ~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 419 RGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred cCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 4799999996 4699999999887 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-57 Score=484.05 Aligned_cols=405 Identities=22% Similarity=0.333 Sum_probs=269.6
Q ss_pred EEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccC
Q 008592 38 RHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQ 117 (560)
Q Consensus 38 ~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~ 117 (560)
+.+.+..........+.....|.|||++|||+|++++||+|+|+++|+|.+.|++||||+.+++. +||++..+|+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~ 111 (451)
T COG2132 34 RTFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPG 111 (451)
T ss_pred ceEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCC
Confidence 44444444444446677888999999999999999999999999999998889999999988855 9999999999999
Q ss_pred CCCeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHHhcCCC
Q 008592 118 TGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADTETIINEAMQTGGA 196 (560)
Q Consensus 118 pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~~~~ 196 (560)
||++++|.|+. .++||||||+|.++|. +||+|++||+++.+.+..+ |++..++..+|+.......... .....
T Consensus 112 ~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~~~---d~~~~i~~~~~~~~~~~~~~~~--~~~~~ 185 (451)
T COG2132 112 PGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPLGV---DDEPVILQDDWLDEDGTDLYQE--GPAMG 185 (451)
T ss_pred CCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCCCC---CceEEEEEeeeecCCCCccccC--Ccccc
Confidence 99999999998 6678999999999988 8999999999987665533 6667777777876665544332 12223
Q ss_pred CCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeCCCccCCC-------CCC
Q 008592 197 PNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKSK-------APN 269 (560)
Q Consensus 197 ~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~p~-------~~~ 269 (560)
...++..+|||+.. ++...++++|||||+|++..+.+.+++.+++|+||++||.++++. .+.
T Consensus 186 ~~~g~~~~vnG~~~-----------p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~ 254 (451)
T COG2132 186 GFPGDTLLVNGAIL-----------PFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPG 254 (451)
T ss_pred CCCCCeEEECCCcc-----------ceeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCc
Confidence 34679999999754 345555677999999999888888999999999999999999881 133
Q ss_pred ceEEEEeccCCCCCCcCCCcceEEEEEecCCCCCCCC----CCCCCCCCCCCCCCCCchhhhhhcccccccccCCCCCCC
Q 008592 270 ANFLIAARPYATGPASFDNTTTAGVLEYDQPNGITTK----NLPLLKPAAILPKFNDTNFVMQFSKKIRSLATAKFPAKV 345 (560)
Q Consensus 270 ~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 345 (560)
++|.+...... .+...+............ ......+ ..+..+.. .......... ..
T Consensus 255 er~~v~v~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~d~~~-~~ 314 (451)
T COG2132 255 ERYEVLVDMND--------GGAVTLTALGEDMPDTLKGFRAPNPILTP--SYPVLNGR---------VGAPTGDMAD-HA 314 (451)
T ss_pred ceEEEEEEcCC--------CCeEEEEeccccCCceeeeeecccccccc--cccccccc---------ccCCCcchhh-cc
Confidence 56666554321 111112111110000000 0000000 00000000 0000000000 00
Q ss_pred CCCcceeEEEEeccCCcCCCCCCcccCCCCCeeeeeecceeccCCchhhhHHhhccCCCCcccCCCCCCCCccccCCCCC
Q 008592 346 PMKVDRRFFFTVGLGLSPCPQNQTCQGPNNTKLAASVNNVSFVQPNVALLQAHFFNRSKGVYTTDFPANPPFKFNYTGTP 425 (560)
Q Consensus 346 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 425 (560)
+..........-+...... ... ...-....|.+|+..|.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~---~~l-~~~~~~~~~~~n~~~~~------------------------------------- 353 (451)
T COG2132 315 PVGLLVTILVEPGPNRDTD---FHL-IGGIGGYVWAINGKAFD------------------------------------- 353 (451)
T ss_pred ccccchhhcCCCccccccc---chh-hcccccccccccCccCC-------------------------------------
Confidence 0000000000000000000 000 00000112333332210
Q ss_pred CCCccccCCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCC
Q 008592 426 PSNIMVSSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSG 505 (560)
Q Consensus 426 ~~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~ 505 (560)
.....+.++.|++++|++.|.+ .+.|||||||+.|+|++.+ .......+.||||+.+.++
T Consensus 354 -------~~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDTv~v~~~ 413 (451)
T COG2132 354 -------DNRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDTVLVAPG 413 (451)
T ss_pred -------CCcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCcccccCccceEEEeCCC
Confidence 0133478899999999999975 3899999999999999986 1223356789999999999
Q ss_pred CEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcC
Q 008592 506 GWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVND 542 (560)
Q Consensus 506 g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~ 542 (560)
+.++|+|.+++||.|+||||+++|++.|||..+.|..
T Consensus 414 ~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 414 ERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred eEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 9999999999999999999999999999999998853
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.7e-41 Score=340.06 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=177.6
Q ss_pred hccCceEEEEEEEEEEEee-ecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCC--cCeeEEecCcccCCCcCCCCC
Q 008592 32 KHEGITRHYKFHIKMQNIT-RLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK--YNVTIHWHGVRQLRSGWADGP 108 (560)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~~-~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~--~~~~iH~HG~~~~~~~~~DGv 108 (560)
++...+++|+|++++..++ .+|..+.+|+|||++|||+|++++||+|+|+|+|+++ .++++||||.. ++||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCC
Confidence 4577889999999999988 5699999999999999999999999999999999985 58999999963 38998
Q ss_pred CCcCccccCCCCeEEEEEEEcccCcceeEeecccc----cc-ccceEeEEEeCCCCCCCCCCCCCcceeEEeeeccccCh
Q 008592 109 AYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIIILPKQQASYPFPQPFEEVPIIFGEWWKADT 183 (560)
Q Consensus 109 ~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~ 183 (560)
++++| |.||++++|+|.+ +++||||||||.++ |. .||+|+|||++++..+ ..|+|++|+++||+++..
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 88887 9999999999998 78999999999754 44 7999999999875322 458899999999998754
Q ss_pred HHHHHHHH-h-cCCCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeCCC
Q 008592 184 ETIINEAM-Q-TGGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAV 261 (560)
Q Consensus 184 ~~~~~~~~-~-~~~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~ 261 (560)
........ . .......++.++|||+.+++ .+.+++++|+++||||||++..+.+.|+++++.+++|+.||.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~ 242 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGK 242 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCc
Confidence 32110000 0 00012356899999996542 235689999999999999999899999999999999999999
Q ss_pred ccCC
Q 008592 262 YAKS 265 (560)
Q Consensus 262 ~v~p 265 (560)
++++
T Consensus 243 ~~~~ 246 (311)
T TIGR02376 243 FANP 246 (311)
T ss_pred ccCC
Confidence 9876
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=9.1e-37 Score=261.23 Aligned_cols=116 Identities=43% Similarity=0.781 Sum_probs=109.0
Q ss_pred EEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeE
Q 008592 43 HIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSY 122 (560)
Q Consensus 43 ~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~ 122 (560)
+|++..++++|..+++|+|||++|||+|++++||+|+|+|+|+++++++|||||+++.+.+|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcccCcceeEeecccccc-ccceEeEEEeCCC
Q 008592 123 VYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQ 158 (560)
Q Consensus 123 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~ 158 (560)
+|+|++.+++||||||||.+++. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999965699999999999975 9999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=8.7e-30 Score=227.26 Aligned_cols=107 Identities=41% Similarity=0.806 Sum_probs=95.0
Q ss_pred cCCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEE
Q 008592 432 SSGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIR 511 (560)
Q Consensus 432 ~~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~ir 511 (560)
..+..++.++.|++|||+|+|.+ ...|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 45677899999999999999965 47999999999999999987765433 345678899999999999999999999
Q ss_pred EEecCceeeEEEeechhhhhcccEEEEEEcC
Q 008592 512 FLADNPGVWFMHCHLEVHTSWGLKMAWIVND 542 (560)
Q Consensus 512 f~adnpG~w~~HCHil~H~d~GMm~~~~V~~ 542 (560)
|+++|||.|+|||||++|+|.|||+.|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999865
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.83 E-value=1.5e-20 Score=171.32 Aligned_cols=129 Identities=30% Similarity=0.592 Sum_probs=101.4
Q ss_pred cceeEEeeeccccChHHHHHHHHhcC----CCCCCCceEEEcCcCCCCCCCC-----CCceeeEEEccCCEEEEEEEecC
Q 008592 169 EEVPIIFGEWWKADTETIINEAMQTG----GAPNISDAFTINGLPGPFYNCA-----AKDTFKLKVTPGKTYLLRMINAA 239 (560)
Q Consensus 169 ~e~~l~~~d~~~~~~~~~~~~~~~~~----~~~~~~d~~lvNG~~~~~~~~~-----~~~~~~~~v~~g~~~rlRliN~~ 239 (560)
+|++|+++||+++...++.......+ ..+..+++++|||+.. +.|+ ....+.+++++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 48899999999998887766444332 2367899999999975 4554 24678999999999999999999
Q ss_pred CCCeEEEEEcCCeEEEEEeCCCccCC--------------------CCCCceEEEEeccCCCCCCcCCCcceEEEEEecC
Q 008592 240 LNDELFFSIANHTLTIVETDAVYAKS--------------------KAPNANFLIAARPYATGPASFDNTTTAGVLEYDQ 299 (560)
Q Consensus 240 ~~~~~~~~i~gh~~~via~DG~~v~p--------------------~~~~~~y~i~~~~~~~~~~~~~~~~~~ail~y~~ 299 (560)
+.+.+.|+|+||+|+|||+||.+++| ++++++|+|++................|+|+|++
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999998 3457889998852222222344567899999986
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.76 E-value=6.4e-18 Score=150.18 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=80.9
Q ss_pred ecCceeEEEEECCCCCCcEEEEecCCEEEEEEEeCCC---cCeeEEecCcccCCCcCCCCCCCcCccccCCC---C-e--
Q 008592 51 RLCQTKSIVTVNGQFPGPRIIAREGDRLLIRVINNVK---YNVTIHWHGVRQLRSGWADGPAYVTQCPIQTG---Q-S-- 121 (560)
Q Consensus 51 ~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~---~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG---~-~-- 121 (560)
..++...-+.++| .++|+|++++||+|+|+|+|.++ ....||+||...+..+-+||++.++||+|.|+ + .
T Consensus 36 ~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~ 114 (148)
T TIGR03095 36 MPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGY 114 (148)
T ss_pred CCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccce
Confidence 3456677788888 67899999999999999999964 34666666665544444899999999999884 1 1
Q ss_pred EEEEEEEcccCcceeEeecccccc-ccceEeEEEe
Q 008592 122 YVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIIL 155 (560)
Q Consensus 122 ~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 155 (560)
.+++|+. .++||||||||..+++ +||+|+|||+
T Consensus 115 ~~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 115 TDFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eEEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 2345554 4799999999998888 7999999995
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.59 E-value=3.3e-15 Score=161.33 Aligned_cols=100 Identities=17% Similarity=0.274 Sum_probs=84.6
Q ss_pred ceeEEEEECCCCCCc--EEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCC--cCccccCCCCeEEEEEEEc
Q 008592 54 QTKSIVTVNGQFPGP--RIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAY--VTQCPIQTGQSYVYNFTVT 129 (560)
Q Consensus 54 ~~~~~~~~ng~~pGP--~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~--~tq~~i~pG~~~~Y~~~~~ 129 (560)
..+.+|+|||+.+++ .|++++||+|+|+|.|.+..++.|||||+...... .||... -....|.||++++|+|.+
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~-~~G~~~~~~dTv~V~Pg~t~~~~f~a- 560 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELED-GQGEFQVRKHTVDVPPGGKRSFRVTA- 560 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeeec-CCCcccccCCceeeCCCCEEEEEEEC-
Confidence 467889999999884 79999999999999999999999999999776542 466321 123789999999999997
Q ss_pred ccCcceeEeecccccc-ccceEeEEEe
Q 008592 130 GQRGTLFWHAHISWLR-ATLYGPIIIL 155 (560)
Q Consensus 130 ~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 155 (560)
+++|+||||||...+. .||++.+.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 8899999999987666 8999999874
No 23
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.46 E-value=7.6e-13 Score=113.45 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCceEEEEEEEE--EEEe---eecCceeEEE-EECCCCCCcEEEEecCCEEEEEEEeCC
Q 008592 13 RATFLGFFALWILSELALAKHEGITRHYKFHIK--MQNI---TRLCQTKSIV-TVNGQFPGPRIIAREGDRLLIRVINNV 86 (560)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~ng~~pGP~i~~~~Gd~v~v~~~N~l 86 (560)
++++++++..++++.. +.+..|+|+++|. ...+ +..|.....+ ++|+++..+.|+|++||+|++++.|..
T Consensus 4 ~~~~~~~~~~~~~~~~----~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d 79 (135)
T TIGR03096 4 KAMFAGFALGLLLMGT----AQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKS 79 (135)
T ss_pred HHHhHHHHHHHhhccc----hhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCC
Confidence 4555555554444333 4447889999999 6665 4568887777 999999999999999999999999998
Q ss_pred CcCe--eEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecccccc
Q 008592 87 KYNV--TIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR 145 (560)
Q Consensus 87 ~~~~--~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 145 (560)
+.++ .+++||+ +..|+||++.+|+|++ +++|+|||||-.|...
T Consensus 80 ~~~H~f~i~~~gi---------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 80 PISEGFSIDAYGI---------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred CCccceEECCCCc---------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 6543 3433332 2458999999999997 8999999999987654
No 24
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.34 E-value=1.9e-10 Score=115.99 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=76.3
Q ss_pred EEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCC--ccceeEeCCCCEEEEEEEec
Q 008592 438 VVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPA--ERNTVGVPSGGWVAIRFLAD 515 (560)
Q Consensus 438 ~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~--~rDTv~vpp~g~v~irf~ad 515 (560)
..++.|++++|.|.|.+. ...+.||++|++|.++... |.+ .++. ..||+.|.||+...|.++++
T Consensus 204 ~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~D-G~~-----------~~~~~~~~~~~~i~PG~R~dv~v~~~ 269 (311)
T TIGR02376 204 NALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWVT-GKF-----------ANPPNRDVETWFIPGGSAAAALYTFE 269 (311)
T ss_pred cccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEEC-Ccc-----------cCCCCCCcceEEECCCceEEEEEEeC
Confidence 367889999999999752 4678999999999999984 321 1222 26899999999999999999
Q ss_pred CceeeEEEeechhhh-hcccEEEEEEcC
Q 008592 516 NPGVWFMHCHLEVHT-SWGLKMAWIVND 542 (560)
Q Consensus 516 npG~w~~HCHil~H~-d~GMm~~~~V~~ 542 (560)
.||.|++|||...|+ ..||++.++|..
T Consensus 270 ~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 270 QPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred CCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 999999999999998 779999998854
No 25
>PLN02604 oxidoreductase
Probab=98.92 E-value=4e-09 Score=115.03 Aligned_cols=92 Identities=20% Similarity=0.333 Sum_probs=71.9
Q ss_pred EEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEec
Q 008592 436 KVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 515 (560)
Q Consensus 436 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 515 (560)
++++++.|+++++.+.|.. ....|+||+||... .+. .-.+. ........|+||+..+++|+++
T Consensus 55 P~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~~--~~~--~~~DG-----------~~~~tq~~i~pg~s~~y~f~~~ 117 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSL--LTENVAIHWHGIRQ--IGT--PWFDG-----------TEGVTQCPILPGETFTYEFVVD 117 (566)
T ss_pred CcEEEECCCEEEEEEEeCC--CCCCCCEEeCCCCC--CCC--ccccC-----------CCccccCccCCCCeEEEEEEcC
Confidence 4588999999999999963 24689999999952 111 00010 0112345789999999999999
Q ss_pred CceeeEEEeechhhhhcccEEEEEEcCCC
Q 008592 516 NPGVWFMHCHLEVHTSWGLKMAWIVNDGK 544 (560)
Q Consensus 516 npG~w~~HCHil~H~d~GMm~~~~V~~~~ 544 (560)
++|.|.||||...|++.||+..+.|.++.
T Consensus 118 ~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 118 RPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred CCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 99999999999999999999999998764
No 26
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.81 E-value=2.3e-08 Score=85.78 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=68.8
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+++.++.|+.|++.+.|.. ..++.+|+||...-- ..+. +.... . -.-.|.||+..+.+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~-----~~~~---DG~~~------~-~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPP-----SPWM---DGVPG------V-TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTT-----GGGG---SGGTT------T-SGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeee-----eeec---CCccc------c-cceeEEeecceeeeEee
Confidence 56799999999999999964 478999999976410 0000 00000 0 01348899999999999
Q ss_pred cC-ceeeEEEeechhhhhcccEEEEEEcCC
Q 008592 515 DN-PGVWFMHCHLEVHTSWGLKMAWIVNDG 543 (560)
Q Consensus 515 dn-pG~w~~HCHil~H~d~GMm~~~~V~~~ 543 (560)
+. +|.|.||||...|...||...+.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999999764
No 27
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.65 E-value=5e-08 Score=86.71 Aligned_cols=88 Identities=24% Similarity=0.346 Sum_probs=70.2
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCC--------------CcCccccCCCCeEEEEEEEcccCc
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPA--------------YVTQCPIQTGQSYVYNFTVTGQRG 133 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~--------------~~tq~~i~pG~~~~Y~~~~~~~~G 133 (560)
+.+.++.|+.+++.+.|.....+.+|+||.........++.. ...-..|.||+..+.+|.+ +.+|
T Consensus 34 ~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~G 112 (138)
T PF07731_consen 34 PVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNPG 112 (138)
T ss_dssp SEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TSTE
T ss_pred ceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecce
Confidence 799999999999999999999999999998765332122111 0122448899999999998 7999
Q ss_pred ceeEeecccccc-ccceEeEEEeC
Q 008592 134 TLFWHAHISWLR-ATLYGPIIILP 156 (560)
Q Consensus 134 t~wYH~H~~~~~-~Gl~G~liV~~ 156 (560)
.|.||||..... .||.+.+.|.+
T Consensus 113 ~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 113 PWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEEEEchHHHHhCCCeEEEEEcC
Confidence 999999997665 89999999975
No 28
>PRK10965 multicopper oxidase; Provisional
Probab=98.56 E-value=3.5e-06 Score=90.89 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=112.5
Q ss_pred EEEEECCCCCCcEEEEecCCEEEEEEEeCCC-cCeeEEe-cCcccCCCcCCCCCC-----CcCccccCCCCeEEEEEEEc
Q 008592 57 SIVTVNGQFPGPRIIAREGDRLLIRVINNVK-YNVTIHW-HGVRQLRSGWADGPA-----YVTQCPIQTGQSYVYNFTVT 129 (560)
Q Consensus 57 ~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~-~~~~iH~-HG~~~~~~~~~DGv~-----~~tq~~i~pG~~~~Y~~~~~ 129 (560)
..+++||+. .|.+.+. |.++++||.|... ....+.+ .|....... .||.+ .+.+..|.||++++..++.
T Consensus 213 d~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa-~DG~~l~~P~~v~~l~lapGeR~dvlv~~- 288 (523)
T PRK10965 213 DTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA-SDGGLLAEPVKVSELPILMGERFEVLVDT- 288 (523)
T ss_pred CeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE-eCCCcccCccEeCeEEECccceEEEEEEc-
Confidence 468999995 6888875 6799999999974 4556666 454322222 78843 2345679999999988887
Q ss_pred ccCcceeEeecccccccc--------ceEeEEEeCCC---CCCCC-----CCC-C------CcceeEEeeeccc------
Q 008592 130 GQRGTLFWHAHISWLRAT--------LYGPIIILPKQ---QASYP-----FPQ-P------FEEVPIIFGEWWK------ 180 (560)
Q Consensus 130 ~~~Gt~wYH~H~~~~~~G--------l~G~liV~~~~---~~~~~-----~~~-~------~~e~~l~~~d~~~------ 180 (560)
.+.|.++...-.... .| -+-.+.|.... ....| .+. . .+.+.+.+..+..
T Consensus 289 ~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~ 367 (523)
T PRK10965 289 SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQM 367 (523)
T ss_pred CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhh
Confidence 456777766532111 11 11223333211 00010 000 0 0122232211100
Q ss_pred ---cChHHHHHHH--------H--------hcC---CCC--CCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEE
Q 008592 181 ---ADTETIINEA--------M--------QTG---GAP--NISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMI 236 (560)
Q Consensus 181 ---~~~~~~~~~~--------~--------~~~---~~~--~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRli 236 (560)
.......... + ..+ ..+ .....++|||+.++ . ..+.++++.|++.+|+|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~---~---~~~~~~~~~G~~e~w~i~ 441 (523)
T PRK10965 368 LMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD---M---NKPMFAAKKGQYERWVIS 441 (523)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC---C---CCcceecCCCCEEEEEEE
Confidence 0000000000 0 000 000 00112489999743 1 245678999999999999
Q ss_pred ecCCCCeEEEEEcCCeEEEEEeCCCccCC
Q 008592 237 NAALNDELFFSIANHTLTIVETDAVYAKS 265 (560)
Q Consensus 237 N~~~~~~~~~~i~gh~~~via~DG~~v~p 265 (560)
|.+....+.|||+|+.|+|++.||.+.++
T Consensus 442 N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~ 470 (523)
T PRK10965 442 GVGDMMLHPFHIHGTQFRILSENGKPPAA 470 (523)
T ss_pred eCCCCCccCeEEeCcEEEEEEecCCCCCc
Confidence 99976679999999999999999987654
No 29
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.54 E-value=3.8e-07 Score=99.29 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=70.9
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.++++.|+.+++.+.|.. ....+.||+||.+. .+. .-.+. .+--....|+||+..+.+|++
T Consensus 31 GP~i~~~~Gd~v~v~v~N~l--~~~~t~iHwHGl~~--~~~--~~~DG-----------~~~vtq~~I~PG~s~~y~f~~ 93 (541)
T TIGR03388 31 GPTIRAQAGDTIVVELTNKL--HTEGVVIHWHGIRQ--IGT--PWADG-----------TAGVTQCAINPGETFIYNFVV 93 (541)
T ss_pred CCeEEEEcCCEEEEEEEECC--CCCCccEEecCcCC--cCC--cccCC-----------CCccccCCcCCCCEEEEEEEc
Confidence 34688999999999999963 23679999999952 110 00000 000113468999999999999
Q ss_pred cCceeeEEEeechhhhhcccEEEEEEcCCC
Q 008592 515 DNPGVWFMHCHLEVHTSWGLKMAWIVNDGK 544 (560)
Q Consensus 515 dnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 544 (560)
+.+|.|.||||...|...||.+.+.|.++.
T Consensus 94 ~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 94 DRPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred CCCEEEEEEecchHHhhccceEEEEEecCC
Confidence 999999999999999999999999998764
No 30
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.42 E-value=1.6e-05 Score=86.64 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=66.6
Q ss_pred EEEEECCCC-C--------CcEEEEecCCEEEEEEEeCC-CcCeeEEecCcccCCCcCCCCCC----CcCccccCCCCeE
Q 008592 57 SIVTVNGQF-P--------GPRIIAREGDRLLIRVINNV-KYNVTIHWHGVRQLRSGWADGPA----YVTQCPIQTGQSY 122 (560)
Q Consensus 57 ~~~~~ng~~-p--------GP~i~~~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~pG~~~ 122 (560)
..+++||+. + -++|.|++|+++++||.|.. .....+|.+|....... .||++ .+....|.||+++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 468999984 1 15899999999999999997 45578888887766554 79974 2345669999999
Q ss_pred EEEEEEcccCcceeEeecc
Q 008592 123 VYNFTVTGQRGTLFWHAHI 141 (560)
Q Consensus 123 ~Y~~~~~~~~Gt~wYH~H~ 141 (560)
+..+++.+.+|.||.+.+.
T Consensus 246 dVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARP 264 (539)
T ss_pred EEEEECCCCCceEEEEEec
Confidence 9999985558999999875
No 31
>PRK10883 FtsI repressor; Provisional
Probab=98.38 E-value=1.2e-05 Score=85.93 Aligned_cols=186 Identities=14% Similarity=0.113 Sum_probs=106.4
Q ss_pred eEEEEECCCCCCcEEEEecCCEEEEEEEeCCC-cCeeEEe-cCcccCCCcCCCCCCC-----cCccccCCCCeEEEEEEE
Q 008592 56 KSIVTVNGQFPGPRIIAREGDRLLIRVINNVK-YNVTIHW-HGVRQLRSGWADGPAY-----VTQCPIQTGQSYVYNFTV 128 (560)
Q Consensus 56 ~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~-~~~~iH~-HG~~~~~~~~~DGv~~-----~tq~~i~pG~~~~Y~~~~ 128 (560)
-.++++||+. .|.|.|+.| ++++|+.|... ....+++ .|....... .||-+. +++..|.||++++.-.+.
T Consensus 209 gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvlVd~ 285 (471)
T PRK10883 209 GDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREILVDM 285 (471)
T ss_pred CCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEEEEC
Confidence 3468999984 589999875 89999999985 5678888 565333332 685331 356779999999998887
Q ss_pred cccCcceeEeecccc-ccccceE------------eEEEeCCCCCCCCCCCCCcceeEEeeec--cccChHHHHHHHHhc
Q 008592 129 TGQRGTLFWHAHISW-LRATLYG------------PIIILPKQQASYPFPQPFEEVPIIFGEW--WKADTETIINEAMQT 193 (560)
Q Consensus 129 ~~~~Gt~wYH~H~~~-~~~Gl~G------------~liV~~~~~~~~~~~~~~~e~~l~~~d~--~~~~~~~~~~~~~~~ 193 (560)
.+.+.+.+++-... ....+.+ .+-++....... . ....+..+... ......+. ..+..
T Consensus 286 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~p~~l~~~~~~~~~~~~~-~~~~l- 358 (471)
T PRK10883 286 -SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPL-V---TDNLPMRLLPDEIMEGSPIRS-REISL- 358 (471)
T ss_pred -CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccC-C---CCcCChhhcCCCCCCCCCcce-EEEEe-
Confidence 55566666652111 1111111 111111110000 0 00000000000 00000000 00000
Q ss_pred CCCCCCCceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeCCCccCC
Q 008592 194 GGAPNISDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETDAVYAKS 265 (560)
Q Consensus 194 ~~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~p 265 (560)
..+.++|||+.++. ....++++.|++++|+|.|.. .+.|||++|.|+|++.||....+
T Consensus 359 -----~~~~~~INg~~~~~------~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~ 416 (471)
T PRK10883 359 -----GDDLPGINGALWDM------NRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFP 416 (471)
T ss_pred -----cCCcCccCCcccCC------CcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCc
Confidence 01224699997531 233468999999999998863 68899999999999999975543
No 32
>PRK02710 plastocyanin; Provisional
Probab=98.36 E-value=7.7e-06 Score=70.42 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=53.6
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecccccccc
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT 147 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 147 (560)
+.|++++||+| +++|....++++.+.|..-. . -+...+.||++++|.|+. +|+|-|+|-.| ..+|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~~----~-----~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H-~~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAKEL----S-----HKDLAFAPGESWEETFSE---AGTYTYYCEPH-RGAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCccc----c-----ccccccCCCCEEEEEecC---CEEEEEEcCCC-ccCC
Confidence 78999999985 56788777888876643110 0 111347899999999973 89999999732 2379
Q ss_pred ceEeEEEe
Q 008592 148 LYGPIIIL 155 (560)
Q Consensus 148 l~G~liV~ 155 (560)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 33
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.27 E-value=3.1e-06 Score=71.19 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=46.7
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecccccccc
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT 147 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 147 (560)
..|+++.|++|+|+++|.....+.+...++... ..|.||++.+++|+. .++|+|=|+|-.+. .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~--~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP--N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS---T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC--c-
Confidence 599999999999999999988777766664332 458999999999985 89999999999766 2
Q ss_pred ceEeEEE
Q 008592 148 LYGPIII 154 (560)
Q Consensus 148 l~G~liV 154 (560)
|.|-|||
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 7777775
No 34
>PLN02191 L-ascorbate oxidase
Probab=98.20 E-value=7e-06 Score=89.73 Aligned_cols=86 Identities=21% Similarity=0.336 Sum_probs=70.4
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccce------eEeCCCCEE
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNT------VGVPSGGWV 508 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDT------v~vpp~g~v 508 (560)
.++++++.|+++++.+.|.- ....+.||.||.+. .+ ..|.|- -.|+||+..
T Consensus 53 GP~i~~~~Gd~v~v~v~N~l--~~~~tsiHwHGl~~----~~-----------------~~~~DGv~gvtq~pI~PG~s~ 109 (574)
T PLN02191 53 GPTIDAVAGDTIVVHLTNKL--TTEGLVIHWHGIRQ----KG-----------------SPWADGAAGVTQCAINPGETF 109 (574)
T ss_pred CCeEEEEcCCEEEEEEEECC--CCCCccEECCCCCC----CC-----------------CccccCCCccccCCcCCCCeE
Confidence 35689999999999999963 33579999999973 11 012221 358999999
Q ss_pred EEEEEecCceeeEEEeechhhhhcccEEEEEEcCC
Q 008592 509 AIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDG 543 (560)
Q Consensus 509 ~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~ 543 (560)
+.+|+++.+|.|.||||...+...||.+.+.|++.
T Consensus 110 ~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~ 144 (574)
T PLN02191 110 TYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVA 144 (574)
T ss_pred EEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccC
Confidence 99999999999999999999999999999999754
No 35
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.13 E-value=1.2e-05 Score=71.66 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=58.5
Q ss_pred EEEEecCCCEEEEEEeeCCcCccCCCceeecCcce--EEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCC---C--CEE
Q 008592 436 KVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNF--FVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPS---G--GWV 508 (560)
Q Consensus 436 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F--~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp---~--g~v 508 (560)
+.+.++.|++|++.+.|... ...|.|-||.+.- .....-.| .|.....-.+|+ | ++.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~~~p~mdG--------------~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYPYMPGMDG--------------LGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCccccccccCC--------------CCccccCcccCCCCCCcccee
Confidence 56889999999999999642 3466666663221 00000000 011111222222 2 246
Q ss_pred EEEEEecCceeeEEEeechhhhhcccEEEEEEc
Q 008592 509 AIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVN 541 (560)
Q Consensus 509 ~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 541 (560)
.+.|+++.+|.|.||||+..|...||...+.|+
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 788888899999999999999999999999873
No 36
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.09 E-value=1.5e-05 Score=72.56 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=77.7
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+++.++.|++++|.|.|.+. ...+.|++.||.|+|++.... +..|...|++.|.+|+.+.|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEe
Confidence 557899999999999999763 468999999999999998422 233778899999999999999999
Q ss_pred cC-ceeeEEEe----echhhhhcccEEEEEEcC
Q 008592 515 DN-PGVWFMHC----HLEVHTSWGLKMAWIVND 542 (560)
Q Consensus 515 dn-pG~w~~HC----Hil~H~d~GMm~~~~V~~ 542 (560)
+. +|.|.++| +...+...|+...+.+.+
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 87 99999999 667788888888887654
No 37
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.08 E-value=1.9e-05 Score=65.70 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=54.9
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCc--CccccCCCCeEEEEEEEcccCcceeEeecccccc
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYV--TQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR 145 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~--tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 145 (560)
..|++++||+| +++|....++++.++........ .+..+.. +...+.||+++++.|.. +|+|+|||- ....
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~-~H~~ 89 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE-PHRG 89 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC-Cccc
Confidence 68999999986 55687777787777643221110 0001111 22346899999998863 899999998 3334
Q ss_pred ccceEeEEEe
Q 008592 146 ATLYGPIIIL 155 (560)
Q Consensus 146 ~Gl~G~liV~ 155 (560)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 7999999985
No 38
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=97.93 E-value=0.00024 Score=77.33 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=61.9
Q ss_pred EEEEECCCC---------------CCcEEEEecCCEEEEEEEeCCC-cCeeEEecCcc-cCCCcCCCCCC----CcCccc
Q 008592 57 SIVTVNGQF---------------PGPRIIAREGDRLLIRVINNVK-YNVTIHWHGVR-QLRSGWADGPA----YVTQCP 115 (560)
Q Consensus 57 ~~~~~ng~~---------------pGP~i~~~~Gd~v~v~~~N~l~-~~~~iH~HG~~-~~~~~~~DGv~----~~tq~~ 115 (560)
..+++||+. ..|+|+|++|+++++|+.|... ....+++.|.. ..... .||.+ .+....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 457899983 1378999999999999999975 45678887766 44443 79974 123456
Q ss_pred cCCCCeEEEEEEEccc-------CcceeEeec
Q 008592 116 IQTGQSYVYNFTVTGQ-------RGTLFWHAH 140 (560)
Q Consensus 116 i~pG~~~~Y~~~~~~~-------~Gt~wYH~H 140 (560)
|.||++++..+++.+. +|-||-..-
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~ 282 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFE 282 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEe
Confidence 9999999999998432 388997764
No 39
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.90 E-value=4.7e-05 Score=63.32 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=52.4
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCccc-CCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeeccccccc
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQ-LRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRA 146 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~-~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 146 (560)
..|++++||+| ++.|....++++.+=--.. .........+.-....+.||++++++|+ ++|+|.|+|-. ...+
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 79999999985 4666665666665532100 0000000000001234789999999997 69999999973 4458
Q ss_pred cceEeEEEe
Q 008592 147 TLYGPIIIL 155 (560)
Q Consensus 147 Gl~G~liV~ 155 (560)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999995
No 40
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.86 E-value=0.00021 Score=76.54 Aligned_cols=192 Identities=17% Similarity=0.105 Sum_probs=112.1
Q ss_pred eeEEEEECCCCCCcEEEEecCCEEEEEEEeCC-CcCeeEEecCcccCCCcCCCCCC----CcCccccCCCCeEEEEEEEc
Q 008592 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNV-KYNVTIHWHGVRQLRSGWADGPA----YVTQCPIQTGQSYVYNFTVT 129 (560)
Q Consensus 55 ~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~pG~~~~Y~~~~~ 129 (560)
......+||+.. ++...+|..+++|+.|.. .....+++.|....... .||.+ .+.+..+.|||+++.....
T Consensus 188 ~g~~~~vnG~~~--p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~~- 263 (451)
T COG2132 188 PGDTLLVNGAIL--PFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVDM- 263 (451)
T ss_pred CCCeEEECCCcc--ceeecCCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEEc-
Confidence 334455666332 444556666999999998 67777888876665554 68865 5677889999999988886
Q ss_pred ccCcceeEeeccccccccceEeEEEeCCCCCCCCC-------CCCC---cceeEEeeeccccChHHHHHHHHhcCCCCCC
Q 008592 130 GQRGTLFWHAHISWLRATLYGPIIILPKQQASYPF-------PQPF---EEVPIIFGEWWKADTETIINEAMQTGGAPNI 199 (560)
Q Consensus 130 ~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~-------~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
...|++-+.+.......-+.+..-........++. +..+ ......+.................. ....
T Consensus 264 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 341 (451)
T COG2132 264 NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--GGIG 341 (451)
T ss_pred CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--cccc
Confidence 44788888888722112222222111111000000 0001 1111111111111110000000000 0112
Q ss_pred CceEEEcCcCCCCCCCCCCceeeEEEccCCEEEEEEEecCCCCeEEEEEcCCeEEEEEeC
Q 008592 200 SDAFTINGLPGPFYNCAAKDTFKLKVTPGKTYLLRMINAALNDELFFSIANHTLTIVETD 259 (560)
Q Consensus 200 ~d~~lvNG~~~~~~~~~~~~~~~~~v~~g~~~rlRliN~~~~~~~~~~i~gh~~~via~D 259 (560)
...+.+||+..+. ....+.++.|+++||+|.|-+. -.+.||++|+.|.|++.|
T Consensus 342 ~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~ 394 (451)
T COG2132 342 GYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD 394 (451)
T ss_pred cccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC
Confidence 3457888886531 2467899999999999999997 788899999999999999
No 41
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.85 E-value=0.0001 Score=59.05 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=52.9
Q ss_pred CcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeeccccccc
Q 008592 67 GPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRA 146 (560)
Q Consensus 67 GP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 146 (560)
.+.|++++||+|. +.|....++++++.........+.. ..+.||+++++.| .++|+|-|||-.|.
T Consensus 10 P~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTVT--WINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTF---TEAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEEE--EEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEEC---CCCEEEEEEcCCCC---
Confidence 3789999999965 6788878888887653211111111 1247888888777 46999999998766
Q ss_pred cceEeEEEe
Q 008592 147 TLYGPIIIL 155 (560)
Q Consensus 147 Gl~G~liV~ 155 (560)
.|.|-++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 599999885
No 42
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.71 E-value=0.00017 Score=77.49 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=70.5
Q ss_pred EEeeecCceeE--EEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEE
Q 008592 47 QNITRLCQTKS--IVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVY 124 (560)
Q Consensus 47 ~~~~~~g~~~~--~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y 124 (560)
..+..+|.+.. +.+..-.|--+.|+|++||+|+++|+|.....-.+ ||..++..+ + +.-+.||++.+.
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~n----I----~~dv~PG~t~sv 601 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNYG----V----NMEVAPQATASV 601 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeecccC----c----cEEEcCCceEEE
Confidence 34556675444 45555566557899999999999999964322122 666554321 1 134789999999
Q ss_pred EEEEcccCcceeEeecccc--ccccceEeEEEeCC
Q 008592 125 NFTVTGQRGTLFWHAHISW--LRATLYGPIIILPK 157 (560)
Q Consensus 125 ~~~~~~~~Gt~wYH~H~~~--~~~Gl~G~liV~~~ 157 (560)
.|++ +++|.|||||..-. .-.+|.|-|+|+++
T Consensus 602 tF~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 602 TFTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 9997 89999999998632 22699999999864
No 43
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.69 E-value=0.00097 Score=59.73 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=71.8
Q ss_pred EEEEECCCCCC-cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCC-------cCCCCCC----CcC-----ccccCCC
Q 008592 57 SIVTVNGQFPG-PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRS-------GWADGPA----YVT-----QCPIQTG 119 (560)
Q Consensus 57 ~~~~~ng~~pG-P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~-------~~~DGv~----~~t-----q~~i~pG 119 (560)
..+-|||+..| ++|.+..|-+|.|++.|....++++-. + +.++ -..||.. |.+ -..|.+|
T Consensus 73 ~~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i--v-~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 73 YPFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL--L-PNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred ccccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE--e-cCCCCCCCccccccCceeEeecccccCcccccccccc
Confidence 44778999888 899999999999999999877766554 1 1111 1136632 222 1335677
Q ss_pred CeEEEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCC
Q 008592 120 QSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQ 159 (560)
Q Consensus 120 ~~~~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 159 (560)
++..=.|. +-++|+|||-|-.-+.. +||+|-+||...-.
T Consensus 150 qs~sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 150 HSRSGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred ceeEEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 77555555 47999999999988776 99999999987643
No 44
>PLN02168 copper ion binding / pectinesterase
Probab=97.68 E-value=0.00018 Score=77.96 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=70.3
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.++++.|+++++.+.|.- ....-+|.||-+. .... ..| ..+- -...|+||+.-+.+|++
T Consensus 56 GP~I~~~~GD~v~V~v~N~L---~~~ttiHWHGl~~--~~~~--~~D-----------Gv~g-tQcpI~PG~sftY~F~~ 116 (545)
T PLN02168 56 GPLLNATANDVINVNIFNNL---TEPFLMTWNGLQL--RKNS--WQD-----------GVRG-TNCPILPGTNWTYRFQV 116 (545)
T ss_pred CCcEEEECCCEEEEEEEeCC---CCCccEeeCCccC--CCCC--CcC-----------CCCC-CcCCCCCCCcEEEEEEe
Confidence 34589999999999999964 3678999999763 1110 000 0011 12468999999999998
Q ss_pred -cCceeeEEEeechhhhhcccEEEEEEcCCCC
Q 008592 515 -DNPGVWFMHCHLEVHTSWGLKMAWIVNDGKG 545 (560)
Q Consensus 515 -dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~ 545 (560)
+.+|.+.||||...+...||...+.|.++++
T Consensus 117 ~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~ 148 (545)
T PLN02168 117 KDQIGSYFYFPSLLLQKAAGGYGAIRIYNPEL 148 (545)
T ss_pred CCCCceEEEecChhhhhhCcceeEEEEcCCcc
Confidence 5899999999999999999999999987643
No 45
>PLN02835 oxidoreductase
Probab=97.62 E-value=0.00019 Score=77.91 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=68.9
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.++++.|++|++.+.|.- .....+|.||-+..- .. ..+..-----.|+||+..+.+|+.
T Consensus 59 GP~I~~~~GD~v~v~v~N~L---~~~ttiHWHGl~~~~----~~------------~~DGv~~tQ~pI~PG~sf~Y~F~~ 119 (539)
T PLN02835 59 GPRLDVVTNDNIILNLINKL---DQPFLLTWNGIKQRK----NS------------WQDGVLGTNCPIPPNSNYTYKFQT 119 (539)
T ss_pred CCCEEEECCCEEEEEEEeCC---CCCCcEEeCCcccCC----CC------------CCCCCccCcCCCCCCCcEEEEEEE
Confidence 34589999999999999974 368899999987411 00 001000012358999999999986
Q ss_pred -cCceeeEEEeechhhhhcccEEEEEEcCC
Q 008592 515 -DNPGVWFMHCHLEVHTSWGLKMAWIVNDG 543 (560)
Q Consensus 515 -dnpG~w~~HCHil~H~d~GMm~~~~V~~~ 543 (560)
+.+|.+.||||...+...||...+.|.++
T Consensus 120 ~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~ 149 (539)
T PLN02835 120 KDQIGTFTYFPSTLFHKAAGGFGAINVYER 149 (539)
T ss_pred CCCCEeEEEEeCccchhcCcccceeEEeCC
Confidence 68999999999999999999999999654
No 46
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.58 E-value=0.00031 Score=58.31 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=57.6
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|++|+|+ |.+ ...|-+.++...+..-.. ........+++.+.||....+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~pG~t~~~tF~~-- 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGVK--------------ELAKSLSHKDLLNSPGESYEVTFST-- 76 (99)
T ss_pred EEEECCCCEEEEE--ECC---CCCceEEECCCCCccchh--------------hhcccccccccccCCCCEEEEEeCC--
Confidence 4789999999997 432 367888776543211100 0011123467788999998887665
Q ss_pred ceeeEEEeechhhhhcccEEEEEEc
Q 008592 517 PGVWFMHCHLEVHTSWGLKMAWIVN 541 (560)
Q Consensus 517 pG~w~~HCHil~H~d~GMm~~~~V~ 541 (560)
||.|.|||- -|..+||...+.|+
T Consensus 77 ~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999874
No 47
>PLN02792 oxidoreductase
Probab=97.48 E-value=0.00039 Score=75.36 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=69.2
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.++++.|+++++.+.|.- ....-+|.||-+..- .. +.+..---...|+||+.-+.+|++
T Consensus 46 GP~I~~~~GD~v~V~v~N~L---~~~ttiHWHGl~q~~----~~------------~~DGv~~tqcPI~PG~sftY~F~~ 106 (536)
T PLN02792 46 GPEIRSLTNDNLVINVHNDL---DEPFLLSWNGVHMRK----NS------------YQDGVYGTTCPIPPGKNYTYDFQV 106 (536)
T ss_pred CCcEEEECCCEEEEEEEeCC---CCCcCEeCCCcccCC----CC------------ccCCCCCCcCccCCCCcEEEEEEe
Confidence 34689999999999999974 378899999987411 00 000000013568999999999998
Q ss_pred -cCceeeEEEeechhhhhcccEEEEEEcCC
Q 008592 515 -DNPGVWFMHCHLEVHTSWGLKMAWIVNDG 543 (560)
Q Consensus 515 -dnpG~w~~HCHil~H~d~GMm~~~~V~~~ 543 (560)
|.+|.|.||||...+...||.+.+.|.+.
T Consensus 107 ~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~ 136 (536)
T PLN02792 107 KDQVGSYFYFPSLAVQKAAGGYGSLRIYSL 136 (536)
T ss_pred CCCccceEEecCcchhhhcccccceEEeCC
Confidence 68999999999999999999999988664
No 48
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.47 E-value=0.00041 Score=75.68 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=71.0
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.++++.|+++++.+.|.- ....-+|.||-+..--....| ..- ....|+||+..+.+|++
T Consensus 59 GPtI~~~~GD~v~V~V~N~L---~~~ttIHWHGl~q~~t~w~DG---------------v~~-TQcPI~PG~sftY~F~~ 119 (596)
T PLN00044 59 GPALNVTTNWNLVVNVRNAL---DEPLLLTWHGVQQRKSAWQDG---------------VGG-TNCAIPAGWNWTYQFQV 119 (596)
T ss_pred CCcEEEECCCEEEEEEEeCC---CCCccEEECCccCCCCccccC---------------CCC-CcCCcCCCCcEEEEEEe
Confidence 34588999999999999974 368899999976421111111 111 23568999999999999
Q ss_pred -cCceeeEEEeechhhhhcccEEEEEEcCCC
Q 008592 515 -DNPGVWFMHCHLEVHTSWGLKMAWIVNDGK 544 (560)
Q Consensus 515 -dnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 544 (560)
|.+|.+-||+|..++...||...+.|.+++
T Consensus 120 ~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 120 KDQVGSFFYAPSTALHRAAGGYGAITINNRD 150 (596)
T ss_pred CCCCceeEeeccchhhhhCcCeeEEEEcCcc
Confidence 689999999999999999999999998754
No 49
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.44 E-value=0.00061 Score=58.94 Aligned_cols=59 Identities=22% Similarity=0.428 Sum_probs=48.0
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|+.|+|.+.|.. +.+|.+-++++.+ ...++||+...|+|.++.
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 478999999999999864 3577766665421 345788999999999999
Q ss_pred ceeeEEEeec
Q 008592 517 PGVWFMHCHL 526 (560)
Q Consensus 517 pG~w~~HCHi 526 (560)
||.|.|||-+
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999955
No 50
>PLN02354 copper ion binding / oxidoreductase
Probab=97.42 E-value=0.00035 Score=76.09 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=69.5
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.++++.|+++++.+.|.- ...=.+|.||-...--....| ++- --..|+||+..+.+|++
T Consensus 57 GP~I~~~~GD~v~V~v~N~l---~~~ttiHWHGi~q~~~~~~DG---------------v~~-TQcpI~PG~sf~Y~F~~ 117 (552)
T PLN02354 57 GPNINSTSNNNIVINVFNNL---DEPFLLTWSGIQQRKNSWQDG---------------VPG-TNCPIPPGTNFTYHFQP 117 (552)
T ss_pred CCcEEEeCCCEEEEEEEECC---CCCcccccccccCCCCcccCC---------------CcC-CcCCCCCCCcEEEEEEe
Confidence 34689999999999999964 245679999987421110001 111 12468999999999998
Q ss_pred -cCceeeEEEeechhhhhcccEEEEEEcCCC
Q 008592 515 -DNPGVWFMHCHLEVHTSWGLKMAWIVNDGK 544 (560)
Q Consensus 515 -dnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 544 (560)
+.+|.+.||||...+...||.+.+.|.+++
T Consensus 118 ~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~ 148 (552)
T PLN02354 118 KDQIGSYFYYPSTGMHRAAGGFGGLRVNSRL 148 (552)
T ss_pred CCCCcceEEecCccceecCCccceEEEcCCc
Confidence 689999999999999999999999998754
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.40 E-value=0.0013 Score=60.18 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=73.5
Q ss_pred EEEEECCCCCC-cEEEEecCCEEEEEEEeCCCcCeeEEe--cCcccC--CCcCCCCCC----C-----cCccccCCCCeE
Q 008592 57 SIVTVNGQFPG-PRIIAREGDRLLIRVINNVKYNVTIHW--HGVRQL--RSGWADGPA----Y-----VTQCPIQTGQSY 122 (560)
Q Consensus 57 ~~~~~ng~~pG-P~i~~~~Gd~v~v~~~N~l~~~~~iH~--HG~~~~--~~~~~DGv~----~-----~tq~~i~pG~~~ 122 (560)
..+-|||..-| ++|.+-.|-+|.|+++|....++++-. -+..++ ..-+.||.. | ..-..|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47889998888 899999999999999998755544322 222111 122245521 1 122367899998
Q ss_pred EEEEEEcccCcceeEeecccccc-ccceEeEEEeCCCCC
Q 008592 123 VYNFTVTGQRGTLFWHAHISWLR-ATLYGPIIILPKQQA 160 (560)
Q Consensus 123 ~Y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~ 160 (560)
.-.|.. -++|+|||-|-.-++. +||++-|+|...-..
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 877753 6799999999998887 899999999876543
No 52
>PLN02991 oxidoreductase
Probab=97.19 E-value=0.0015 Score=70.92 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=69.5
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.++++.|+++++.+.|.- ...--+|.||-+.. +....|. .+. ---.|+||+.-+.+|++
T Consensus 58 GP~I~~~~GD~v~V~V~N~L---~~~ttiHWHGi~q~----~~~~~DG-----------v~~-tQcpI~PG~sftY~F~~ 118 (543)
T PLN02991 58 GPDIISVTNDNLIINVFNHL---DEPFLISWSGIRNW----RNSYQDG-----------VYG-TTCPIPPGKNYTYALQV 118 (543)
T ss_pred CCcEEEECCCEEEEEecCCC---CCCccEEECCcccC----CCccccC-----------CCC-CCCccCCCCcEEEEEEe
Confidence 34589999999999999963 36778999998831 1000000 011 12468999999999999
Q ss_pred -cCceeeEEEeechhhhhcccEEEEEEcCCC
Q 008592 515 -DNPGVWFMHCHLEVHTSWGLKMAWIVNDGK 544 (560)
Q Consensus 515 -dnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 544 (560)
+.+|.+-||+|...+...|+...+.|.++.
T Consensus 119 ~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~ 149 (543)
T PLN02991 119 KDQIGSFYYFPSLGFHKAAGGFGAIRISSRP 149 (543)
T ss_pred CCCCcceEEecCcchhhhCCCeeeEEEeCCc
Confidence 689999999999999999999999998653
No 53
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.12 E-value=0.0081 Score=51.70 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=53.2
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecccccccc
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRAT 147 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~G 147 (560)
-.|++++||+ |++.|.....++++.-+.. .+ +|.- .....+|++|++.|. ++|+|-|+|-.|. .+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~---~~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG---TLKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc---ccccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 4899999999 6678888778888776654 11 2221 133355678877775 4999999987532 379
Q ss_pred ceEeEEEeC
Q 008592 148 LYGPIIILP 156 (560)
Q Consensus 148 l~G~liV~~ 156 (560)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 54
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.01 E-value=0.0043 Score=52.81 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=49.0
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEe-cCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeeccccccc
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHW-HGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRA 146 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~-HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 146 (560)
..|+|++||+|+....|. ++++.+ .+.. -+|... ....+|++++++| +++|+|=|+|-. ...+
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~p-H~~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTP-HYGM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCC-CccC
Confidence 689999999977766654 355443 2211 122211 1124577777666 468999999982 2348
Q ss_pred cceEeEEEeCCC
Q 008592 147 TLYGPIIILPKQ 158 (560)
Q Consensus 147 Gl~G~liV~~~~ 158 (560)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999998753
No 55
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.99 E-value=0.0039 Score=51.74 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=54.4
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|++|.|+..+ ...|.+.+=- .+ .....+.... +..-.+..+.+|....+.|. .
T Consensus 18 ~i~V~~G~tV~~~n~~-----~~~Hnv~~~~-------~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~--~ 76 (99)
T PF00127_consen 18 EITVKAGDTVTFVNND-----SMPHNVVFVA-------DG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT--K 76 (99)
T ss_dssp EEEEETTEEEEEEEES-----SSSBEEEEET-------TS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--S
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEec-------cc---cccccccccc----CccccceecCCCCEEEEEeC--C
Confidence 4889999999998653 2567665432 11 0000000000 01115667888888777776 8
Q ss_pred ceeeEEEeechhhhhcccEEEEEEc
Q 008592 517 PGVWFMHCHLEVHTSWGLKMAWIVN 541 (560)
Q Consensus 517 pG~w~~HCHil~H~d~GMm~~~~V~ 541 (560)
+|.|.|+|- - |...||-..+.|+
T Consensus 77 ~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 77 PGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CeEEEEEcC-C-CcccCCEEEEEEC
Confidence 999999999 5 9999999999884
No 56
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.73 E-value=0.006 Score=65.94 Aligned_cols=78 Identities=17% Similarity=0.346 Sum_probs=59.0
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|+.|.+.+.|.....+..|-|-|-++.. -+.+.||....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcCC
Confidence 3788999999999999532234678777744432 234668899999999999
Q ss_pred ceeeEEEeechhhh-hcccEEEEEEcC
Q 008592 517 PGVWFMHCHLEVHT-SWGLKMAWIVND 542 (560)
Q Consensus 517 pG~w~~HCHil~H~-d~GMm~~~~V~~ 542 (560)
||+|.+||...-|. +.+|...+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999985433 248988888864
No 57
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.69 E-value=0.014 Score=49.56 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=49.3
Q ss_pred cEEEEecCCEEEEEEEeCC-CcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeeccccccc
Q 008592 68 PRIIAREGDRLLIRVINNV-KYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRA 146 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~ 146 (560)
..|+|++||+|+ ++|+. ..++++..-+ ... .| .......+|++|+|.|. ++|+|=|+|-.| ...
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~-f~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH-~~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGD-LD----ESERVSEEGTTYEHTFE---EPGIYLYVCVPH-EAL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCC-cc----ccccccCCCCEEEEEec---CCcEEEEEccCC-CCC
Confidence 689999999966 66543 4566665321 111 11 01123578999999994 589999999854 336
Q ss_pred cceEeEEEe
Q 008592 147 TLYGPIIIL 155 (560)
Q Consensus 147 Gl~G~liV~ 155 (560)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 999999984
No 58
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.60 E-value=0.01 Score=49.74 Aligned_cols=61 Identities=13% Similarity=0.318 Sum_probs=41.2
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|+.+.+++.|.+. ..|-|.+-+.. -...+++|+...+.|.++.
T Consensus 36 ~i~v~~G~~v~l~~~N~~~---~~h~~~i~~~~----------------------------~~~~l~~g~~~~~~f~~~~ 84 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDS---RPHEFVIPDLG----------------------------ISKVLPPGETATVTFTPLK 84 (104)
T ss_dssp EEEEETTCEEEEEEEE-SS---S-EEEEEGGGT----------------------------EEEEE-TT-EEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEEECCC---CcEEEEECCCc----------------------------eEEEECCCCEEEEEEcCCC
Confidence 5899999999999999652 44555555411 1367889999999999999
Q ss_pred ceeeEEEeechh
Q 008592 517 PGVWFMHCHLEV 528 (560)
Q Consensus 517 pG~w~~HCHil~ 528 (560)
||.|-|+|-+-.
T Consensus 85 ~G~y~~~C~~~~ 96 (104)
T PF13473_consen 85 PGEYEFYCTMHP 96 (104)
T ss_dssp -EEEEEB-SSS-
T ss_pred CEEEEEEcCCCC
Confidence 999999999443
No 59
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.12 E-value=0.027 Score=61.08 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=70.1
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.+.+..|+++.+.+.|.. ..+=-+|.||-+..=-.-. |+..=-.-.|+||+..+.+|+.
T Consensus 58 GP~I~~~~gD~ivV~v~N~~---~~~~sihWhGv~q~kn~w~----------------DG~~~TqCPI~Pg~~~tY~F~v 118 (563)
T KOG1263|consen 58 GPTINAEEGDTIVVNVVNRL---DEPFSIHWHGVRQRKNPWQ----------------DGVYITQCPIQPGENFTYRFTV 118 (563)
T ss_pred CCeEEEEeCCEEEEEEEeCC---CCceEEEeccccccCCccc----------------cCCccccCCcCCCCeEEEEEEe
Confidence 44688899999999999973 3677899999875221111 1111112368899999999999
Q ss_pred c-CceeeEEEeechhhhhcccEEEEEEcCCC
Q 008592 515 D-NPGVWFMHCHLEVHTSWGLKMAWIVNDGK 544 (560)
Q Consensus 515 d-npG~w~~HCHil~H~d~GMm~~~~V~~~~ 544 (560)
+ ..|.|.||-|..+|-+.||.+.|.|.+..
T Consensus 119 ~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~ 149 (563)
T KOG1263|consen 119 KDQIGTLWYHSHVSWQRATGVFGALIINPRP 149 (563)
T ss_pred CCcceeEEEeeccccccccCceeEEEEcCCc
Confidence 5 99999999999999999999999997754
No 60
>PRK02710 plastocyanin; Provisional
Probab=96.09 E-value=0.029 Score=48.23 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=50.5
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|++|+|+ |.+ ..+|.+.+.+... + ..+ -..+.+|....+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~--------------~~~-~~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------L--------------SHK-DLAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------c--------------ccc-ccccCCCCEEEEEecC--
Confidence 3788999999986 422 3688876542210 0 001 2346788877766665
Q ss_pred ceeeEEEeechhhhhcccEEEEEEc
Q 008592 517 PGVWFMHCHLEVHTSWGLKMAWIVN 541 (560)
Q Consensus 517 pG~w~~HCHil~H~d~GMm~~~~V~ 541 (560)
||.|.|+|= .|...||-..+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999883
No 61
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.034 Score=48.91 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=63.4
Q ss_pred EEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecCc
Q 008592 438 VVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNP 517 (560)
Q Consensus 438 ~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adnp 517 (560)
+.++.|++++.++.|.+. .-|=|=+= ++.... +.+.......+ ..-.-..++.+.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~--~~~~~~~~~~D---me~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNL--EHVTHMILADD---MEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCccc---ceEEEecc---Cccccc--hhHHHhhhCCc---cccCCcceeEeCCCCcEEEEEEecCC
Confidence 677889999999999653 34443332 111111 00000000000 11123458999999999999999999
Q ss_pred eeeEEEeechhhhhcccEEEEEEc
Q 008592 518 GVWFMHCHLEVHTSWGLKMAWIVN 541 (560)
Q Consensus 518 G~w~~HCHil~H~d~GMm~~~~V~ 541 (560)
|.|-|-|-|-+|-++||-..|.|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999885
No 62
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.10 E-value=0.14 Score=43.58 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=29.8
Q ss_pred CCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCC
Q 008592 504 SGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDG 543 (560)
Q Consensus 504 p~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~ 543 (560)
++.. +.++++.+|.|-|+|= .|...||-..+.|.++
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 4444 4455578999999998 9999999999999875
No 63
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=93.98 E-value=0.43 Score=37.98 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=44.8
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|++|.|+ |.. ...|-++++...+ +.. .+. ...+.++... +++++.
T Consensus 12 ~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~--------------~~~-~~~~~~g~~~--~~tf~~ 62 (83)
T TIGR02657 12 ELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEA--------------ALK-GPMMKKEQAY--SLTFTE 62 (83)
T ss_pred EEEECCCCEEEEE--ECC---CCCccEEecCCCC-------ccc--------------ccc-ccccCCCCEE--EEECCC
Confidence 4789999999995 432 3678887653221 000 011 1123445444 456688
Q ss_pred ceeeEEEeechhhhhcccEEEEEEc
Q 008592 517 PGVWFMHCHLEVHTSWGLKMAWIVN 541 (560)
Q Consensus 517 pG~w~~HCHil~H~d~GMm~~~~V~ 541 (560)
||.|.|||=+ |- +|-..+.|+
T Consensus 63 ~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 63 AGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CEEEEEEcCC--CC--CCeEEEEEC
Confidence 9999999986 54 588888773
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.71 Score=40.81 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=63.5
Q ss_pred CCCCcEEEEecCCEEEEEEEeCCCc--Cee---------EEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccC
Q 008592 64 QFPGPRIIAREGDRLLIRVINNVKY--NVT---------IHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQR 132 (560)
Q Consensus 64 ~~pGP~i~~~~Gd~v~v~~~N~l~~--~~~---------iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~ 132 (560)
.+++-.+.++.|++++..+.|...- ..+ .--|..... .+++- ......+.||++-+..|.. .++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~---Dme~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILAD---DMEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCC---ccccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 4567789999999999999997631 111 112333322 13332 1223668999999999998 679
Q ss_pred cceeEeecccccc-ccceEeEEEeC
Q 008592 133 GTLFWHAHISWLR-ATLYGPIIILP 156 (560)
Q Consensus 133 Gt~wYH~H~~~~~-~Gl~G~liV~~ 156 (560)
|.|=+-|-.-+.+ +||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999988 89999998864
No 65
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.47 E-value=0.57 Score=39.81 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=47.5
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|++|.|+.+.. ...|-.. +.+.+.|+. ......+|+...+.| +.
T Consensus 43 ~ltV~~GdTVtw~~~~d----~~~HnV~---------s~~~~~f~s---------------~~~~~~~G~t~s~Tf--~~ 92 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE----GGGHNVV---------SDGDGDLDE---------------SERVSEEGTTYEHTF--EE 92 (115)
T ss_pred EEEECCCCEEEEEECCC----CCCEEEE---------ECCCCCccc---------------cccccCCCCEEEEEe--cC
Confidence 47899999999975431 2455543 222222221 011234555555544 78
Q ss_pred ceeeEEEeechhhhhcccEEEEEEc
Q 008592 517 PGVWFMHCHLEVHTSWGLKMAWIVN 541 (560)
Q Consensus 517 pG~w~~HCHil~H~d~GMm~~~~V~ 541 (560)
||.|.|+|= .|...||-..+.|+
T Consensus 93 ~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 93 PGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999998 89999999999884
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.18 E-value=0.89 Score=39.02 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=50.1
Q ss_pred CcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecc-cccc
Q 008592 67 GPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHI-SWLR 145 (560)
Q Consensus 67 GP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~ 145 (560)
.+.|.+..|++|++++++. +.-+++...++.. +.-+-||+.....|++ +++|+|++.|.- -|..
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~-------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI-------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE-------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc-------------ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 3789999999999999995 3333443333322 2345789999999997 899999999984 2222
Q ss_pred -ccceEeEEE
Q 008592 146 -ATLYGPIII 154 (560)
Q Consensus 146 -~Gl~G~liV 154 (560)
+.|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 567776665
No 67
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=91.34 E-value=1.1 Score=38.22 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=54.5
Q ss_pred cEEEEecC-CEEEEEEEeCCCcCeeEEecCcccCCCcCCC---------C-----CCC----c--CccccCCCCeEEEEE
Q 008592 68 PRIIAREG-DRLLIRVINNVKYNVTIHWHGVRQLRSGWAD---------G-----PAY----V--TQCPIQTGQSYVYNF 126 (560)
Q Consensus 68 P~i~~~~G-d~v~v~~~N~l~~~~~iH~HG~~~~~~~~~D---------G-----v~~----~--tq~~i~pG~~~~Y~~ 126 (560)
..|.|..+ .+|.|+|.|....+-..--|-+-......++ | +|. | .-.-|.|||+.+.+|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 58999984 7999999998543322222211110000011 1 211 0 112378999999999
Q ss_pred EEcc-cCcc-eeEeeccccccccceEeEEE
Q 008592 127 TVTG-QRGT-LFWHAHISWLRATLYGPIII 154 (560)
Q Consensus 127 ~~~~-~~Gt-~wYH~H~~~~~~Gl~G~liV 154 (560)
+++. ++|+ |-|-|-+-+....|.|.|.+
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~l 125 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVKL 125 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEeC
Confidence 9852 6886 99999998888889888753
No 68
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=90.88 E-value=2.8 Score=35.92 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=54.2
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.+.++.|+.|.+.+.+. +..|.|.+-....+ +.+.||....+.|.+
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k----------------------------~d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGIK----------------------------MDAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTEE----------------------------EEEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCcc----------------------------cccccccceeeeeee
Confidence 3458999999999999985 36888888765543 345678888999999
Q ss_pred cCceeeEEEeechhhhh-cccEEEEEE
Q 008592 515 DNPGVWFMHCHLEVHTS-WGLKMAWIV 540 (560)
Q Consensus 515 dnpG~w~~HCHil~H~d-~GMm~~~~V 540 (560)
+.||.|-..|..+=... .-|...+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 99999999999876443 445455544
No 69
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=89.50 E-value=3.9 Score=42.24 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCcEEEEecCCEEEEEEEeCCCcCeeEEec-CcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecccc
Q 008592 65 FPGPRIIAREGDRLLIRVINNVKYNVTIHWH-GVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW 143 (560)
Q Consensus 65 ~pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~H-G~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~ 143 (560)
+--..+.+..|+ +.+.|+|....++.+-.- |..+.. ..-.|.||.+.++.+++ .+|+|=|+|-.+
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~~~~~vv~----------e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~- 106 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKALEWEILKGVMVVE----------ERENIAPGFSQKMTANL--QPGEYDMTCGLL- 106 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCcceEEeeccccccc----------cccccCCCCceEEEEec--CCceEEeecCcC-
Confidence 333689999996 899999998665432111 111100 11358999999888776 599999999432
Q ss_pred ccccceEeEEEeCCC
Q 008592 144 LRATLYGPIIILPKQ 158 (560)
Q Consensus 144 ~~~Gl~G~liV~~~~ 158 (560)
..+.|.|+|.+..
T Consensus 107 --~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 --TNPKGKLIVKGEA 119 (375)
T ss_pred --CCCCceEEEeCCC
Confidence 3348899998653
No 70
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=88.94 E-value=3.3 Score=38.32 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=61.2
Q ss_pred CCcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCC---CCCCCCC--CCCCCccceeEeCCCCE
Q 008592 433 SGTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPN---KDPAKFN--LVDPAERNTVGVPSGGW 507 (560)
Q Consensus 433 ~~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~---~~~~~~~--~~~p~~rDTv~vpp~g~ 507 (560)
.+...+.++.|-.|.+.+.|.. .+.| .|-|+..+....+.. .+.+-+. -..+.--..--+.+|..
T Consensus 83 ~G~m~i~VPAGw~V~i~f~N~~---~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 83 NGQMTIYVPAGWNVQITFTNQE---SLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CCcEEEEEcCCCEEEEEEEcCC---CCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 3456789999999999999964 3554 566665432111100 0010000 00010001112335555
Q ss_pred EEEEEEecCceeeEEEeechhhhhcccEEEEEEcCC
Q 008592 508 VAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDG 543 (560)
Q Consensus 508 v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~ 543 (560)
...-+..-.+|.|.|=|=+.-|...||-..+.|-+.
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 555565667999999999999999999999998653
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=88.31 E-value=2 Score=40.55 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=55.6
Q ss_pred EEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEec
Q 008592 436 KVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 515 (560)
Q Consensus 436 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 515 (560)
+.+.++.|+.|++.+.+.. ..|.|.+-+... -..+-||....+.|.++
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~Hsf~ip~~~~----------------------------k~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VIHSFWVPELGG----------------------------KIDAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hhhcccccccCc----------------------------eEEecCCcEEEEEEEeC
Confidence 3588999999999998843 456555533221 23355788889999999
Q ss_pred CceeeEEEeechhhh-hcccEEEEEEcCC
Q 008592 516 NPGVWFMHCHLEVHT-SWGLKMAWIVNDG 543 (560)
Q Consensus 516 npG~w~~HCHil~H~-d~GMm~~~~V~~~ 543 (560)
.||.|...|-..-.. +..|...+.|.++
T Consensus 165 ~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 999999999984322 3778888888764
No 72
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=88.16 E-value=5.3 Score=36.35 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=59.3
Q ss_pred CcEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCC-CCC--CCCCCCCCC--CCCCccceeEeCCCCEE
Q 008592 434 GTKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGN-FDP--NKDPAKFNL--VDPAERNTVGVPSGGWV 508 (560)
Q Consensus 434 ~~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~-~~~--~~~~~~~~~--~~p~~rDTv~vpp~g~v 508 (560)
+...+.++.|-.|.+++.|.. ..+| .+-|+..+... ..+ ..+.+.+++ ..+.--..=-+..|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 457789999999999999964 3454 44454433110 000 011111110 00000011112345565
Q ss_pred EEEEEecCceeeEEEeechhhhhcccEEEEEEcC
Q 008592 509 AIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVND 542 (560)
Q Consensus 509 ~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~ 542 (560)
..-+..--||.+-+=|=+.-|...||-..+.|-.
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 5666667899999999999999999999998854
No 73
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=86.43 E-value=4 Score=35.26 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=46.4
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.++++.|++|+|+-.. ...|-.+.=+-. .|..-+++...++.....- ++-
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s~~~T--fe~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM-----------------------DPEGSGTLKAGINESFTHT--FET 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC-----------------------CcccccccccCCCcceEEE--ecc
Confidence 3788999999997542 236655432222 1111223333333444444 455
Q ss_pred ceeeEEEeechhhhhcccEEEEEEcC
Q 008592 517 PGVWFMHCHLEVHTSWGLKMAWIVND 542 (560)
Q Consensus 517 pG~w~~HCHil~H~d~GMm~~~~V~~ 542 (560)
||.|.|.|- .|..+||-..+.|++
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeCC
Confidence 999999995 699999999998853
No 74
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=82.44 E-value=14 Score=34.74 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=55.5
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecc-cccc-
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHI-SWLR- 145 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 145 (560)
..|.+..|++|++++++.. .+ ||..++.- |+ |.-+-||..-+..|++ +++|+|...|.- .|..
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 5899999999999999854 12 66555422 11 2345689988888986 899999988874 3333
Q ss_pred ccceEeEEEeCCC
Q 008592 146 ATLYGPIIILPKQ 158 (560)
Q Consensus 146 ~Gl~G~liV~~~~ 158 (560)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 7899999988754
No 75
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=82.29 E-value=5.7 Score=38.63 Aligned_cols=77 Identities=8% Similarity=0.015 Sum_probs=56.6
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecc-cccc-
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHI-SWLR- 145 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~-~~~~- 145 (560)
..|.+..|.+|+++++-. +.-+++...++... .-.-||...+..+++ +++|+|.-.|+- .|..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~k-------------~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGGK-------------IDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCce-------------eeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 889999999999998766 33333333333322 234678888888886 899999999984 4444
Q ss_pred ccceEeEEEeCCCC
Q 008592 146 ATLYGPIIILPKQQ 159 (560)
Q Consensus 146 ~Gl~G~liV~~~~~ 159 (560)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 78999999998764
No 76
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=73.51 E-value=4.7 Score=41.87 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=50.3
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeeccc--ccc
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHIS--WLR 145 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~--~~~ 145 (560)
-++.|++||.|++.++|-....-.+ ||.-.+. -|+- ..+.|-++-.|.|.+ +.+|.+||.+--. ...
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 4788999999999988876544444 3333221 1121 446778888888887 7899999876432 222
Q ss_pred ccceEeEEEe
Q 008592 146 ATLYGPIIIL 155 (560)
Q Consensus 146 ~Gl~G~liV~ 155 (560)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 5667777775
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=72.65 E-value=14 Score=35.93 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=55.2
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.+.++.|+.|++.+...+ ..|.|.+-+-.++ +.+-||-...+.+.+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D----ViHsF~IP~l~~k----------------------------~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD----VIHSFWIPQLGGK----------------------------IDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEech----hceeEEecCCCce----------------------------eeecCCceEEEEEec
Confidence 34588999999999998743 5666655544433 334567778889999
Q ss_pred cCceeeEEEeechhhhh-cccEEEEEEcCC
Q 008592 515 DNPGVWFMHCHLEVHTS-WGLKMAWIVNDG 543 (560)
Q Consensus 515 dnpG~w~~HCHil~H~d-~GMm~~~~V~~~ 543 (560)
+.||.|-.+|+.+-=.. ..|-..+.|.+.
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEcH
Confidence 99999999999987444 455556666544
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=67.64 E-value=29 Score=27.44 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=33.1
Q ss_pred cEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCC---cCccccCCCCeEEEEEEEccc---CcceeE
Q 008592 68 PRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAY---VTQCPIQTGQSYVYNFTVTGQ---RGTLFW 137 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~---~tq~~i~pG~~~~Y~~~~~~~---~Gt~wY 137 (560)
=+|+..-|++..+.|.|.-.+.. -.|++|-.. +.+..|.||++.+|++..+.. +|+|..
T Consensus 16 v~l~f~sgq~~D~~v~d~~g~~v-----------wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDKEGKEV-----------WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEESSS--EEEEEE-TT--EE-----------EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCCEE-----------EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 46777777777777776543221 146888653 345569999999999998633 688754
No 79
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=66.69 E-value=7.2 Score=32.79 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=28.0
Q ss_pred EEEEeCCCcC---eeEEecCccc-----CCCcCCCCCCCcCccccCCCCeEEEEE
Q 008592 80 IRVINNVKYN---VTIHWHGVRQ-----LRSGWADGPAYVTQCPIQTGQSYVYNF 126 (560)
Q Consensus 80 v~~~N~l~~~---~~iH~HG~~~-----~~~~~~DGv~~~tq~~i~pG~~~~Y~~ 126 (560)
|++.|....+ .+=|||=-.. ... -+||-| -|.-|.||++|+|.=
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~--G~GVVG-eQP~l~PG~~y~YtS 85 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVE--GEGVVG-EQPLLAPGEEYQYTS 85 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEE--cCceec-cccccCCCCceEEcC
Confidence 6677776554 4568883222 222 355544 578899999999954
No 80
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=66.58 E-value=42 Score=34.28 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=32.6
Q ss_pred eeEEEEECCCCCCcEEEEecCCEEEEEEEeCCCcCee--------EEecCcccCCCc--C-CCCCC----CcC-ccccCC
Q 008592 55 TKSIVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVT--------IHWHGVRQLRSG--W-ADGPA----YVT-QCPIQT 118 (560)
Q Consensus 55 ~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~--------iH~HG~~~~~~~--~-~DGv~----~~t-q~~i~p 118 (560)
..++..-+=+.||=+++++ ++|+|+.+.+.. ++|-.-.+.... + .|-++ -++ ..||+|
T Consensus 250 ~~~v~~A~Y~vpgR~l~~~------l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~P 323 (381)
T PF04744_consen 250 KVKVTDATYRVPGRTLTMT------LTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAP 323 (381)
T ss_dssp EEEEEEEEEESSSSEEEEE------EEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-T
T ss_pred EEEEeccEEecCCcEEEEE------EEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCC
Confidence 3444433445677777654 788888765433 333332222110 0 01111 123 358999
Q ss_pred CCeEEEEEEEc
Q 008592 119 GQSYVYNFTVT 129 (560)
Q Consensus 119 G~~~~Y~~~~~ 129 (560)
||+.+.+..+.
T Consensus 324 GETrtl~V~a~ 334 (381)
T PF04744_consen 324 GETRTLTVEAQ 334 (381)
T ss_dssp T-EEEEEEEEE
T ss_pred CceEEEEEEee
Confidence 99999999873
No 81
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=62.58 E-value=55 Score=26.13 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=42.1
Q ss_pred CcEEEEe---cCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEe
Q 008592 67 GPRIIAR---EGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWH 138 (560)
Q Consensus 67 GP~i~~~---~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH 138 (560)
.|.+.++ ....|.|+|.|.......+........ .+. ..+..|.||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~--~~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGG--PWTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCC--CEEEEECCCCEEEEEEeec--CCCCcEE
Confidence 4555554 234899999999888877777653221 111 1446799999999999873 3445665
No 82
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=62.51 E-value=64 Score=32.94 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=14.3
Q ss_pred ccccCCCCeEEEEEEE
Q 008592 113 QCPIQTGQSYVYNFTV 128 (560)
Q Consensus 113 q~~i~pG~~~~Y~~~~ 128 (560)
+.||+|||+.+.+..+
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999887
No 83
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.80 E-value=32 Score=33.08 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=55.1
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.+.++.|+.|++.+.+.. ..|.|.+=.... .+.+-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----ViHsf~ip~~~~----------------------------k~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VIHSWTVPSLGV----------------------------KVDAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cccceeccccCc----------------------------eeECCCCcceeEEEEe
Confidence 34578999999999998853 566655543322 2334477788889999
Q ss_pred cCceeeEEEeechhhh-hcccEEEEEEcCC
Q 008592 515 DNPGVWFMHCHLEVHT-SWGLKMAWIVNDG 543 (560)
Q Consensus 515 dnpG~w~~HCHil~H~-d~GMm~~~~V~~~ 543 (560)
+.||.+...|.-+-.. +..|-..++|.+.
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 9999999999987755 4556666666553
No 84
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.72 E-value=69 Score=29.97 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=54.7
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|+.+++.+... +..|.|.+-....+ +.+-||-...+.|.++.
T Consensus 117 ~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~k----------------------------~d~~PG~~~~~~~~~~~ 164 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS----DVIHSFSVPDLNLK----------------------------MDAIPGRINHLFFCPDR 164 (194)
T ss_pred eEEEeCCCEEEeeeecC----ccccceeccccCce----------------------------eecCCCceEEEEEEcCC
Confidence 47889999999999874 36777666543321 22347888889999999
Q ss_pred ceeeEEEeechhhh-hcccEEEEEEcCC
Q 008592 517 PGVWFMHCHLEVHT-SWGLKMAWIVNDG 543 (560)
Q Consensus 517 pG~w~~HCHil~H~-d~GMm~~~~V~~~ 543 (560)
||.+-.-|.-+-=. +..|-..++|.++
T Consensus 165 ~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 165 HGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 99999999987543 4566667777654
No 85
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=53.59 E-value=90 Score=25.97 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=44.2
Q ss_pred EEEEEeCCCcCeeEEecCcccCCCcCCC-CCCCcCccccCCCCeEEEEEEEcccCcceeEeeccccccccceEeEEEeCC
Q 008592 79 LIRVINNVKYNVTIHWHGVRQLRSGWAD-GPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIIILPK 157 (560)
Q Consensus 79 ~v~~~N~l~~~~~iH~HG~~~~~~~~~D-Gv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 157 (560)
.|+++|.|.....|..|=-... .| |+ ..+.||+++..+|.. +--|+--|.++..-....-+.-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DDLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----ccCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4889999966666666654321 22 22 458999999999985 5557777777765522223556666543
No 86
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=48.16 E-value=1.1e+02 Score=27.73 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=50.8
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
.+.++.|+.+++.+... +..|.|.+-..-. -+..-||-...+.|.++.
T Consensus 74 ~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgv----------------------------K~DavPGr~n~l~~~~~~ 121 (162)
T PTZ00047 74 RLTLPTRTHIRFLITAT----DVIHSWSVPSLGI----------------------------KADAIPGRLHKINTFILR 121 (162)
T ss_pred CEEEeCCCEEEEEEEeC----ccceeeeccccCc----------------------------eeeccCCceEEEEEecCC
Confidence 47789999999999874 3567665543332 222336777788889999
Q ss_pred ceeeEEEeechhhhh-cccEEEEEEcC
Q 008592 517 PGVWFMHCHLEVHTS-WGLKMAWIVND 542 (560)
Q Consensus 517 pG~w~~HCHil~H~d-~GMm~~~~V~~ 542 (560)
||.|...|.-+-=.. ..|-..+.|.+
T Consensus 122 ~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 122 EGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CeEEEEEcchhcCcCccCceEEEEEeC
Confidence 999999998875322 34655666544
No 87
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=47.90 E-value=23 Score=27.49 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=26.2
Q ss_pred ecCC--EEEEEEEeCCCcC---eeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEc----ccCccee
Q 008592 73 REGD--RLLIRVINNVKYN---VTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVT----GQRGTLF 136 (560)
Q Consensus 73 ~~Gd--~v~v~~~N~l~~~---~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~----~~~Gt~w 136 (560)
.+|+ ++.++|.|....+ ..+-+- .+.+|.......+-..|+||++.+..|.+. -.+|+|-
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe----CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 4455 4557778877433 222221 245565222111223689999998888873 2356654
No 88
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=47.67 E-value=28 Score=30.10 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=13.1
Q ss_pred CCCCCCcCccccCCCCeEEEE
Q 008592 105 ADGPAYVTQCPIQTGQSYVYN 125 (560)
Q Consensus 105 ~DGv~~~tq~~i~pG~~~~Y~ 125 (560)
.+||-| .|.-|.||++|.|.
T Consensus 66 G~GVVG-~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 66 GEGVVG-EQPVLAPGESFEYT 85 (127)
T ss_pred CCceec-CCceECCCCCeEEe
Confidence 355543 35568999988774
No 89
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=42.22 E-value=82 Score=30.26 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=52.6
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
-+.++.|+.|++.+...+ ..|. |+|-+-+ ..+|.+ ||-...+.|+++.
T Consensus 140 el~lP~g~pV~~~ltS~D----ViHS-------F~VP~l~------------------~K~Dai---PG~~n~~~~~~~~ 187 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNS----VMNS-------FFIPQLG------------------SQIYAM---AGMQTKLHLIANE 187 (226)
T ss_pred eEEEECCCEEEEEEEECc----hhhh-------hhhhhcC------------------CeeecC---CCceEEEEEEeCC
Confidence 378899999999998743 4555 4443222 123444 7888889999999
Q ss_pred ceeeEEEeechhhh-hcccEEEEEEcCC
Q 008592 517 PGVWFMHCHLEVHT-SWGLKMAWIVNDG 543 (560)
Q Consensus 517 pG~w~~HCHil~H~-d~GMm~~~~V~~~ 543 (560)
||.|.-.|--+-=. +..|...+.|.++
T Consensus 188 ~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 188 PGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999775422 3667777776654
No 90
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=34.08 E-value=1.7e+02 Score=28.19 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=53.1
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.+.++.|+.|++.+.+.. ..|.|.+-+...+ +..-||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~D----ViHsf~vP~~~~k----------------------------~daiPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD----VIHSWTVPSLGVK----------------------------VDAVPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeCC----ccccccccccCcc----------------------------eecCCCceEEEEEEe
Confidence 34578999999999999853 5665554443322 223367778888999
Q ss_pred cCceeeEEEeechhhhh-cccEEEEEEcC
Q 008592 515 DNPGVWFMHCHLEVHTS-WGLKMAWIVND 542 (560)
Q Consensus 515 dnpG~w~~HCHil~H~d-~GMm~~~~V~~ 542 (560)
+.||.+..-|.-+-... .-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 99999999998876553 45555565554
No 91
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=33.72 E-value=1.2e+02 Score=22.75 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=16.8
Q ss_pred eeeEEEccCCEEEEEEEecCC
Q 008592 220 TFKLKVTPGKTYLLRMINAAL 240 (560)
Q Consensus 220 ~~~~~v~~g~~~rlRliN~~~ 240 (560)
.+.|++++|+++++.+-+.+.
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~ 24 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG 24 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS
T ss_pred EEEEEEcCCCEEEEEEcCCCC
Confidence 467899999999888876664
No 92
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=32.31 E-value=1.9e+02 Score=24.70 Aligned_cols=61 Identities=25% Similarity=0.386 Sum_probs=35.4
Q ss_pred CcEEEEecCCEEEEEEEeCC---CcCeeEEec----CcccC-CCcCCCCCCCcCccccCCCCeEEEEEEE
Q 008592 67 GPRIIAREGDRLLIRVINNV---KYNVTIHWH----GVRQL-RSGWADGPAYVTQCPIQTGQSYVYNFTV 128 (560)
Q Consensus 67 GP~i~~~~Gd~v~v~~~N~l---~~~~~iH~H----G~~~~-~~~~~DGv~~~tq~~i~pG~~~~Y~~~~ 128 (560)
+..=.+++|..+.+.+.=.. ........| |+..+ +....||=-+ ..||+.+|+.++|.+..
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 44556788887777665222 222334444 43333 2122455222 36999999999998876
No 93
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=32.26 E-value=1.8e+02 Score=28.28 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=53.6
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.+.++.|+.|++.+... +..|.|.+-.-..+ +|.+ ||-...+.|.+
T Consensus 150 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgvK-------------------------~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA----DVLHSFAVPSLGLK-------------------------IDAV---PGRLNQTGFFI 197 (240)
T ss_pred CceEEEecCCEEEEEEEcC----CcccceeecccCce-------------------------eecC---CCcceeEEEEc
Confidence 3458899999999999874 36776665443322 2333 66667788999
Q ss_pred cCceeeEEEeechhhhh-cccEEEEEEcCC
Q 008592 515 DNPGVWFMHCHLEVHTS-WGLKMAWIVNDG 543 (560)
Q Consensus 515 dnpG~w~~HCHil~H~d-~GMm~~~~V~~~ 543 (560)
+.||.+.-.|.-+--.. .-|-..++|.+.
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999998876553 455556665543
No 94
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=30.90 E-value=57 Score=28.93 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.0
Q ss_pred eCCCCEEEEEEEe-cCc---eeeEEEeech
Q 008592 502 VPSGGWVAIRFLA-DNP---GVWFMHCHLE 527 (560)
Q Consensus 502 vpp~g~v~irf~a-dnp---G~w~~HCHil 527 (560)
|+||..+.|.++. .|| |.|.|+|=..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 6889999999964 577 9999998543
No 95
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.44 E-value=1.8e+02 Score=28.05 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=52.4
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.+.++.|+.+++.+.... .. |.|+|-+-+ ...| .-||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~------------------~k~d---a~PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAED----VL-------HSWAVPALG------------------VKMD---AVPGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeCc----cc-------cceeccccC------------------Cccc---cCCCceEEEEEEe
Confidence 34578999999999998743 34 456654432 1123 3478888889999
Q ss_pred cCceeeEEEeechhhh-hcccEEEEEEcC
Q 008592 515 DNPGVWFMHCHLEVHT-SWGLKMAWIVND 542 (560)
Q Consensus 515 dnpG~w~~HCHil~H~-d~GMm~~~~V~~ 542 (560)
+.||.+-..|.-+=-. +..|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEEC
Confidence 9999999999886543 355666666654
No 96
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=30.22 E-value=82 Score=31.57 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCceEEEEEEEEEEEeeecCceeEEEEECCCCCCcEEEEecCCEEE
Q 008592 12 LRATFLGFFALWILSELALAKHEGITRHYKFHIKMQNITRLCQTKSIVTVNGQFPGPRIIAREGDRLL 79 (560)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~ 79 (560)
|+.++++++++++++..++|......-.++=.|.....+++- ...+.+.-|.. -.|.+.+|++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~a~A~~~p~~~~~D~RIr~v~Y~p~~-V~~V~~~~G~~--T~I~f~~gE~I~ 66 (292)
T PRK13861 2 IKKLFLTLACLLFAAIGALAEDTPAAGKLDPRMRYLAYNPDQ-VVRLSTAVGAT--LVVTFGANETVT 66 (292)
T ss_pred hhHHHHHHHHHHHhccchhHhhcCCCCCCCCceEEEEeCCCC-EEEEEEECCcE--EEEEECCCCEEE
Confidence 445556666555444445554433333344445444444443 23333333332 478889999884
No 97
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=29.99 E-value=4.5e+02 Score=29.87 Aligned_cols=67 Identities=12% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCcEEEEec---CCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCCCcCccccCCCCeEEEEEEEcccCcceeEeecc
Q 008592 66 PGPRIIARE---GDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPAYVTQCPIQTGQSYVYNFTVTGQRGTLFWHAHI 141 (560)
Q Consensus 66 pGP~i~~~~---Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~ 141 (560)
+.|.++++. ...|+|+|.|.-.....+|..-... .++.| -+..|++|++.+-.|.+ ..++ -||.--.
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y-----~~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDLtV 661 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAY-----GGAGP--RTVTVAPGQRVELHWDL-SASG-GWYDFTV 661 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCC-----CCCCC--EEEEECCCCEEEEEEec-cCCC-CceEEEE
Confidence 446676654 4469999999998888887763211 11112 13568999999999976 3333 6776443
No 98
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=29.63 E-value=3.9e+02 Score=23.81 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=34.8
Q ss_pred EEEEecCCEEEEEEEeCCCc---CeeEEecCccc-----C-CCcCCCCCCCc-----CccccCCCCeEEEEEEEc
Q 008592 69 RIIAREGDRLLIRVINNVKY---NVTIHWHGVRQ-----L-RSGWADGPAYV-----TQCPIQTGQSYVYNFTVT 129 (560)
Q Consensus 69 ~i~~~~Gd~v~v~~~N~l~~---~~~iH~HG~~~-----~-~~~~~DGv~~~-----tq~~i~pG~~~~Y~~~~~ 129 (560)
.=.+++|.+..|.+.=.... ...--.||+-. + +.+..||-... --||+.+|+.++|.+..+
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 44577787766655444422 22222344322 1 12235664432 459999999999998874
No 99
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=29.51 E-value=1.7e+02 Score=27.87 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=51.5
Q ss_pred EEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEecC
Q 008592 437 VVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 516 (560)
Q Consensus 437 ~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~adn 516 (560)
-+.++.|+.|++.+.+.+ ..|. |+|=+-+ ..+|.+ ||-...+.|.++.
T Consensus 131 ~l~iP~g~~v~~~ltS~D----ViHs-------f~vP~l~------------------~k~dai---PG~~~~~~~~~~~ 178 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSAD----TMTS-------FWIPQLG------------------GQKYAM---TGMTMNWYLQADQ 178 (217)
T ss_pred cEEEECCCEEEEEEECCc----hhhh-------hhchhhC------------------ceeecC---CCceEEEEEEeCC
Confidence 377899999999998743 4554 4442221 123444 7888899999999
Q ss_pred ceeeEEEeechhhh-hcccEEEEEEcCC
Q 008592 517 PGVWFMHCHLEVHT-SWGLKMAWIVNDG 543 (560)
Q Consensus 517 pG~w~~HCHil~H~-d~GMm~~~~V~~~ 543 (560)
||.|--.|=-+-=. +.-|...++|.++
T Consensus 179 ~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 179 VGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred CEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 99999999765322 3466667766554
No 100
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=29.00 E-value=2e+02 Score=24.54 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=33.7
Q ss_pred cEEEEecCCEEEEEEEeCCCc-----CeeEEec--CcccCCCc-CCCCCCCc-CccccCCCCeEEEEEEE
Q 008592 68 PRIIAREGDRLLIRVINNVKY-----NVTIHWH--GVRQLRSG-WADGPAYV-TQCPIQTGQSYVYNFTV 128 (560)
Q Consensus 68 P~i~~~~Gd~v~v~~~N~l~~-----~~~iH~H--G~~~~~~~-~~DGv~~~-tq~~i~pG~~~~Y~~~~ 128 (560)
..=.+++|+.+.+.+.=...+ .+.+|+. |+..+... ..|+=-.. ..||+.+|+.++|.+.+
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 344577788777666522211 2233333 54433211 13441111 45999999999999876
No 101
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=28.23 E-value=73 Score=22.31 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=27.7
Q ss_pred eEeCCCCEEEEEEEecCceeeEEEeechhhhhc
Q 008592 500 VGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSW 532 (560)
Q Consensus 500 v~vpp~g~v~irf~adnpG~w~~HCHil~H~d~ 532 (560)
|..+.|..+.++++......+=+||..+.|.+.
T Consensus 13 v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 13 VKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred EEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 334568888999999999999999999999763
No 102
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.14 E-value=2.4e+02 Score=27.05 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=51.2
Q ss_pred EEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEec
Q 008592 436 KVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 515 (560)
Q Consensus 436 ~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~ad 515 (560)
+.+.++.|+.|++.+.... ..|. |+|-+-| ...| .-||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViHs-------f~ip~lg------------------~k~d---aiPG~~~~~~~~~~ 187 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED----VLHS-------WAVPSLG------------------LKTD---AIPGRLNQTTLMST 187 (227)
T ss_pred ceEEecCCCEEEEEEEECc----cccc-------ccccccc------------------ccee---cCCCceEEEEEecC
Confidence 4578999999999998743 4544 4442221 1123 33778888899999
Q ss_pred CceeeEEEeechhhhh-cccEEEEEEcC
Q 008592 516 NPGVWFMHCHLEVHTS-WGLKMAWIVND 542 (560)
Q Consensus 516 npG~w~~HCHil~H~d-~GMm~~~~V~~ 542 (560)
.||.+..-|.-+-... .-|-..++|.+
T Consensus 188 ~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 188 RPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CcEEEEEECccccCcCcCCceEEEEEeC
Confidence 9999999998876553 45555565544
No 103
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=28.11 E-value=42 Score=27.56 Aligned_cols=35 Identities=34% Similarity=0.282 Sum_probs=27.3
Q ss_pred EEEECCCCCCcEEEEecCCEEEEEEEeCCCcCeeE
Q 008592 58 IVTVNGQFPGPRIIAREGDRLLIRVINNVKYNVTI 92 (560)
Q Consensus 58 ~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~~i 92 (560)
-..+||+.-=|.=.|+.||.|+|++.|.+-....+
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEEEEEE
Confidence 45688887678889999999999998887543333
No 104
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=27.42 E-value=62 Score=33.10 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=25.6
Q ss_pred CCCCCCcCccccCCCCeEEEEEEEc-ccCcceeEeeccccccc-cceEe---EEEeCC
Q 008592 105 ADGPAYVTQCPIQTGQSYVYNFTVT-GQRGTLFWHAHISWLRA-TLYGP---IIILPK 157 (560)
Q Consensus 105 ~DGv~~~tq~~i~pG~~~~Y~~~~~-~~~Gt~wYH~H~~~~~~-Gl~G~---liV~~~ 157 (560)
+.|.|-..-..+..|++|.|+..+. ..+|+|--|.-..-... .+.|+ +.|++.
T Consensus 72 ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~g~ 129 (381)
T PF04744_consen 72 INGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIEGS 129 (381)
T ss_dssp ETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEES-
T ss_pred ecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEecc
Confidence 4444333336689999988888774 67999655554443332 24443 556644
No 105
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=25.48 E-value=2.1e+02 Score=30.25 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=26.0
Q ss_pred eeEeCCCCEEEEEEEecCceeeEEEe----echhhhhccc
Q 008592 499 TVGVPSGGWVAIRFLADNPGVWFMHC----HLEVHTSWGL 534 (560)
Q Consensus 499 Tv~vpp~g~v~irf~adnpG~w~~HC----Hil~H~d~GM 534 (560)
.+.+.|....++-|.++.||.|++-| |.+.-|..|=
T Consensus 593 ~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~r 632 (637)
T COG4263 593 NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGR 632 (637)
T ss_pred EEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccc
Confidence 45566778889999999999999876 4444444443
No 106
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.58 E-value=3.1e+02 Score=26.42 Aligned_cols=76 Identities=16% Similarity=0.308 Sum_probs=50.6
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.+.++.|+.+++.+.... ..|. |+|-+-| . -+..-||....+.+.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViHs-------f~iP~lg------------------~---k~daiPG~~~~~~~~~ 186 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAED----VLHS-------WTVPALG------------------V---KMDAVPGRLNQATFII 186 (230)
T ss_pred CCeEEEecCCEEEEEEEcCc----cccc-------ccccccC------------------c---eeEecCCceEEEEEEe
Confidence 34578999999999998743 4544 4442221 1 1223367777888899
Q ss_pred cCceeeEEEeechhhhh-cccEEEEEEcC
Q 008592 515 DNPGVWFMHCHLEVHTS-WGLKMAWIVND 542 (560)
Q Consensus 515 dnpG~w~~HCHil~H~d-~GMm~~~~V~~ 542 (560)
+.||.+.--|.-+=... .-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 187 SRPGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CCcEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 99999999999876553 34445555544
No 107
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.95 E-value=4.3e+02 Score=25.39 Aligned_cols=76 Identities=12% Similarity=0.290 Sum_probs=52.2
Q ss_pred cEEEEecCCCEEEEEEeeCCcCccCCCceeecCcceEEEEeCCCCCCCCCCCCCCCCCCCCccceeEeCCCCEEEEEEEe
Q 008592 435 TKVVVLPFNASVEVVMQDTSIIVAESHPLHLHGFNFFVVAQGFGNFDPNKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 514 (560)
Q Consensus 435 ~~~~~~~~g~~ve~~i~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~~p~~rDTv~vpp~g~v~irf~a 514 (560)
.+.+.++.|+.+++.+.... ..|.|.+-.... ..|. -||....+.|.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~D----ViHsf~iP~lg~-------------------------k~da---iPG~~~~~~~~~ 186 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSAD----VLHSWAVPSLGV-------------------------KMDA---VPGRLNQTTFFI 186 (229)
T ss_pred CceEEEecCeEEEEEEEECC----ccccccccccCc-------------------------eeec---CCCceEEEEEEc
Confidence 34578999999999998743 566665543322 1233 367778888999
Q ss_pred cCceeeEEEeechhhhhcccE-EEEEEcC
Q 008592 515 DNPGVWFMHCHLEVHTSWGLK-MAWIVND 542 (560)
Q Consensus 515 dnpG~w~~HCHil~H~d~GMm-~~~~V~~ 542 (560)
+.||.+..-|--+--..+..| ..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFMPIVIESVP 215 (229)
T ss_pred CCCEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 999999999988765544444 4444443
No 108
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.50 E-value=3.3e+02 Score=24.29 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=34.8
Q ss_pred EEEEEEEEEEEeeecCceeEEEEECCCC-CCcEEEEecCCEEEEEEEeCCCcCeeEEecCcccCCCcCCCCCC
Q 008592 38 RHYKFHIKMQNITRLCQTKSIVTVNGQF-PGPRIIAREGDRLLIRVINNVKYNVTIHWHGVRQLRSGWADGPA 109 (560)
Q Consensus 38 ~~~~l~~~~~~~~~~g~~~~~~~~ng~~-pGP~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DGv~ 109 (560)
..|-++.++...... ...+.+-+.|.+ +| +|.-..|..++++++-. .....++..|.. +..+.+|..
T Consensus 34 ~~yf~tpse~~~~~~-~~g~~vrvgG~V~~g-Si~~~~~~~~~F~ltD~-~~~i~V~Y~G~l--Pd~F~eg~~ 101 (148)
T PRK13254 34 IVFFYTPSEVAEGEA-PAGRRFRLGGLVEKG-SVQRGDGLTVRFVVTDG-NATVPVVYTGIL--PDLFREGQG 101 (148)
T ss_pred CceeeCHHHHhcCCc-cCCCeEEEeEEEecC-cEEeCCCCEEEEEEEeC-CeEEEEEECCCC--CccccCCCE
Confidence 345555554332222 122233334443 33 33333677888888766 566788888864 334456654
No 109
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=21.02 E-value=3.3e+02 Score=28.38 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=25.8
Q ss_pred EeCCCCEEEEEEEecCceeeEEEeechhhhhcccEEEEEEcCC
Q 008592 501 GVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVNDG 543 (560)
Q Consensus 501 ~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~ 543 (560)
.|.||....+.+.. -||.|.|+| ..| ..|-..|.|..+
T Consensus 81 nIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 81 NIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGKLIVKGE 118 (375)
T ss_pred ccCCCCceEEEEec-CCceEEeec--CcC--CCCCceEEEeCC
Confidence 46677655555554 599999999 335 445677888654
No 110
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=20.02 E-value=41 Score=30.60 Aligned_cols=31 Identities=13% Similarity=0.380 Sum_probs=26.3
Q ss_pred EEEEecCCEEEEEEEeCCCcCeeEEecCccc
Q 008592 69 RIIAREGDRLLIRVINNVKYNVTIHWHGVRQ 99 (560)
Q Consensus 69 ~i~~~~Gd~v~v~~~N~l~~~~~iH~HG~~~ 99 (560)
.+.++-++++.+.+.|++....++||||+..
T Consensus 70 ~~~~n~~~~~~~d~~~rlt~~~s~~W~~vl~ 100 (191)
T KOG4387|consen 70 ELPGNDRKPGILDFQERLTVAKSMNWHGVLS 100 (191)
T ss_pred cccccCCCCcEEeccchhheeeecccceEEe
Confidence 4556677889999999999999999999864
Done!