BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008593
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S30|A Chain A, Crystal Structure Of A Hypothetical Glycoside Hydrolase
(Bvu_0247) From Bacteroides Vulgatus Atcc 8482 At 2.46 A
Resolution
pdb|3S30|B Chain B, Crystal Structure Of A Hypothetical Glycoside Hydrolase
(Bvu_0247) From Bacteroides Vulgatus Atcc 8482 At 2.46 A
Resolution
Length = 354
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 346 NCVHPNDLAFPQKISVENLKRVAYKNVNQFVLIDARANFGPLMPSPNQQDEALSS----- 400
N +P + P + EN+K V Y +VL +A + + L S Q AL+
Sbjct: 91 NIHYPETKSIPTVFNFENVKTVPYNKNEYYVLYEAASGYSTLTWSSGNQGFALTGSGYTP 150
Query: 401 ---PTSILQN 407
PTSI N
Sbjct: 151 NDFPTSISPN 160
>pdb|1UZ6|E Chain E, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|L Chain L, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|M Chain M, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|V Chain V, Anti-Lewis X Fab Fragment Uncomplexed
Length = 218
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 467 CPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSN---GI---FFAPSSDSNFGVHISR 520
C S L+ SN + LQ PG SP I++ SN G+ F + S ++F + ISR
Sbjct: 23 CRSSKSLLYSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISR 82
Query: 521 I 521
+
Sbjct: 83 V 83
>pdb|1UB5|L Chain L, Crystal Structure Of Antibody 19g2 With Hapten At 100k
pdb|1UB5|B Chain B, Crystal Structure Of Antibody 19g2 With Hapten At 100k
Length = 214
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 467 CPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSN---GI---FFAPSSDSNFGVHISR 520
C S L+ SN + LQ PG SP I++ SN G+ F + S ++F + ISR
Sbjct: 23 CRSTKSLLHSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPNRFSSSGSGTDFTLRISR 82
Query: 521 I 521
+
Sbjct: 83 V 83
>pdb|1XGY|L Chain L, Crystal Structure Of Anti-Meta I Rhodopsin Fab Fragment
K42- 41l
pdb|1XGY|M Chain M, Crystal Structure Of Anti-Meta I Rhodopsin Fab Fragment
K42- 41l
Length = 216
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 467 CPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSN---GI---FFAPSSDSNFGVHISR 520
C S L+ SN + LQ PG SP I+ SN G+ F S ++F + ISR
Sbjct: 23 CRSSKSLLHSNGITYLYWYLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTDFALRISR 82
Query: 521 I 521
+
Sbjct: 83 V 83
>pdb|1UZ8|A Chain A, Anti-Lewis X Fab Fragment In Complex With Lewis X
pdb|1UZ8|L Chain L, Anti-Lewis X Fab Fragment In Complex With Lewis X
Length = 218
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 467 CPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSN---GI---FFAPSSDSNFGVHISR 520
C S L+ SN + LQ PG SP I++ SN G+ F + S ++F + ISR
Sbjct: 23 CRSSKSLLYSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISR 82
Query: 521 I 521
+
Sbjct: 83 V 83
>pdb|3CFB|L Chain L, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFB|A Chain A, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFC|L Chain L, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2
Length = 219
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 467 CPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSN---GI---FFAPSSDSNFGVHISR 520
C S L+ SN + LQ PG SP I++ SN G+ F + S ++F + ISR
Sbjct: 23 CRSTKSLLHSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISR 82
Query: 521 I 521
+
Sbjct: 83 V 83
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 158 REFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKG 217
R + VR+ + + P I + G G+ I F +W+R + +G +L G
Sbjct: 287 RALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYG 346
Query: 218 CREA 221
CR +
Sbjct: 347 CRRS 350
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 158 REFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKG 217
R + VR+ + + P I + G G+ I F +W+R + +G +L G
Sbjct: 287 RALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYG 346
Query: 218 CREA 221
CR +
Sbjct: 347 CRRS 350
>pdb|3PP3|L Chain L, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type I
TYPE II Distinction Of Anti- Cd20 Antibodies
pdb|3PP3|K Chain K, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type I
TYPE II Distinction Of Anti- Cd20 Antibodies
pdb|3PP4|L Chain L, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type I
TYPE II Distinction Of Anti- Cd20 Antibodies
Length = 219
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 467 CPSCPQLVPSNHLAVEMPQLQMPGWSPYNAIWEQSNGI------FFAPSSDSNFGVHISR 520
C S L+ SN + LQ PG SP I++ SN + F S ++F + ISR
Sbjct: 23 CRSSKSLLHSNGITYLYWYLQKPGQSPQLLIYQMSNLVSGVPDRFSGSGSGTDFTLKISR 82
Query: 521 I 521
+
Sbjct: 83 V 83
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 158 REFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKG 217
R + VR+ + + P I + G G+ I F +W+R + +G +L G
Sbjct: 447 RALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYG 506
Query: 218 CREA 221
CR +
Sbjct: 507 CRRS 510
>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr
Length = 637
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 158 REFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKG 217
R + VR+ + + P I + G G+ I F +W+R + +G +L G
Sbjct: 466 RALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYG 525
Query: 218 CREA 221
CR +
Sbjct: 526 CRRS 529
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 158 REFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKG 217
R + VR+ + + P I + G G+ I F +W+R + +G +L G
Sbjct: 447 RALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYG 506
Query: 218 CREA 221
CR +
Sbjct: 507 CRRS 510
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 158 REFLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKG 217
R + VR+ + + P I + G G+ I F +W+R + +G +L G
Sbjct: 447 RALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYG 506
Query: 218 CREA 221
CR +
Sbjct: 507 CRRS 510
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 160 FLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCR 219
+L K+ ++++ + + T + TL+ G+ D++ + S+ C G +V
Sbjct: 101 YLLKLFQDKDVLKRVYTQNID-TLERQAGVKDDLIIEAHGSFAHCHCIGCG-KVYPPQVF 158
Query: 220 EARIKEAKSEAFVVKDHRGELNK-------KHYPPS-----LDDDIWRLEKIAKDGKYHE 267
++++ E + FV D GEL K + P S L+D W EKI GK+ +
Sbjct: 159 KSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQ 218
Query: 268 R 268
+
Sbjct: 219 Q 219
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 160 FLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCR 219
+L K+ ++++ + + T + TL+ G+ D++ + S+ C G +V
Sbjct: 104 YLLKLFQDKDVLKRVYTQNID-TLERQAGVKDDLIIEAHGSFAHCHCIGCG-KVYPPQVF 161
Query: 220 EARIKEAKSEAFVVKDHRGELNK-------KHYPPS-----LDDDIWRLEKIAKDGKY 265
++++ E + FV D GEL K + P S L+D W EKI GK+
Sbjct: 162 KSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKH 219
>pdb|4IT1|A Chain A, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|B Chain B, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|C Chain C, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|D Chain D, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
Length = 446
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 144 NGDFGSDDHENWTEREFLEKIVREREGKRPLVTGELHITLKDGVGILSD 192
N D+ D H W E + E++++ GK P+V G + IT G+G+ D
Sbjct: 363 NLDYACDTHYPWQEPD--EEVIKG--GKLPIVDGCVKITRAPGLGLELD 407
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 160 FLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCR 219
+L K+ ++++ + + T + TL+ G+ D++ + S+ C G +V
Sbjct: 94 YLLKLFQDKDVLKRVYTQNID-TLERQAGVKDDLIIEAHGSFAHCHCIGCG-KVYPPQVF 151
Query: 220 EARIKEAKSEAFVVKDHRGELNK-------KHYPPS-----LDDDIWRLEKIAKDGKYHE 267
++++ E + FV D GEL K + P S L+D W EKI GK+ +
Sbjct: 152 KSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQ 211
Query: 268 R 268
+
Sbjct: 212 Q 212
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 160 FLEKIVREREGKRPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCR 219
+L K+ ++++ + + T + TL+ G+ D++ + S+ C G +V
Sbjct: 112 YLLKLFQDKDVLKRVYTQNID-TLERQAGVKDDLIIEAHGSFAHCHCIGCG-KVYPPQVF 169
Query: 220 EARIKEAKSEAFVVKDHRGELNK-------KHYPPS-----LDDDIWRLEKIAKDGKYHE 267
++++ E + FV D GEL K + P S L+D W EKI GK+ +
Sbjct: 170 KSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQ 229
Query: 268 R 268
+
Sbjct: 230 Q 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,111,156
Number of Sequences: 62578
Number of extensions: 715837
Number of successful extensions: 1490
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 33
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)