BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008593
(560 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C3LNS6|MEND_VIBCM 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Vibrio cholerae serotype O1 (strain M66-2)
GN=menD PE=3 SV=1
Length = 570
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 387 LMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLDHASTSTSYSQEAVADDHQSHPIQN 446
L+P P++Q EAL H FAH QFGL + + T + + ++H +H
Sbjct: 490 LLPVPSEQREALYQ-----MPHGMDFAHAASQFGLAYCAAQTLEHYQTLVEEHFAHGAGT 544
Query: 447 SLTVGDFPP 455
L PP
Sbjct: 545 LLIEVKTPP 553
>sp|Q9KQM3|MEND_VIBCH 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=menD PE=3 SV=1
Length = 570
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 387 LMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLDHASTSTSYSQEAVADDHQSHPIQN 446
L+P P++Q EAL H FAH QFGL + + T + + ++H +H
Sbjct: 490 LLPVPSEQREALYQ-----MPHGMDFAHAASQFGLAYCAAQTLEHYQTLVEEHFAHGAGT 544
Query: 447 SLTVGDFPP 455
L PP
Sbjct: 545 LLIEVKTPP 553
>sp|A5F6T1|MEND_VIBC3 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=menD PE=3 SV=1
Length = 570
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 387 LMPSPNQQDEALSSPTSILQNHEFPFAHQEVQFGLDHASTSTSYSQEAVADDHQSHPIQN 446
L+P P++Q EAL H FAH QFGL + + T + + ++H +H
Sbjct: 490 LLPVPSEQREALYQ-----MPHGMDFAHAASQFGLAYCAAQTLEHYQTLVEEHFAHGAGT 544
Query: 447 SLTVGDFPP 455
L PP
Sbjct: 545 LLIEVKTPP 553
>sp|Q5U3Q6|CIP4_DANRE Cdc42-interacting protein 4 homolog OS=Danio rerio GN=trip10 PE=2
SV=1
Length = 542
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 3 QSKMVPKRPFDDDGFGVLVPEPRKRPTLKKVVDDVMK 39
+SK P++P D +GF L PE R R L++ +DD+ K
Sbjct: 324 KSKFTPEKPVDTEGFTHLPPEQR-RKRLQQKIDDMSK 359
>sp|Q7ZXT3|EDC4_XENLA Enhancer of mRNA-decapping protein 4 OS=Xenopus laevis GN=edc4 PE=2
SV=1
Length = 1391
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 49 SLEPCIRSVVREELERVLLPRFHPGARSSFNQAETSEGRGLQLLFVNKLPCPIYTGSRIE 108
SL+ I S RE + ++LP F +S F Q S +G Q ++ +L + + E
Sbjct: 1095 SLQTVIHSAYREAFQSIVLPAFERSCQSMFQQVNNSFKQGTQ-DYMQQLEAHLRSIKMNE 1153
Query: 109 AEDGGPVKIVL---VDPISK------TRVTSGPYSSMKVEILVLNGDFGSDDHENWTERE 159
E PV L VD + + +TS S ++ ++ + G+ D + +R
Sbjct: 1154 QETRDPVVTQLQQMVDSLQTVTDQLASNITSNVRSEVQHQLHIAVGNM-QDSILSQVQRI 1212
Query: 160 FLEKIVREREGKRPLVTGELHITLKDGVG 188
E++ + ++ VT + ++ G
Sbjct: 1213 IKEEVSHAMKEQQAAVTSSIMQAMRSAAG 1241
>sp|Q3BSC5|EX7L_XANC5 Exodeoxyribonuclease 7 large subunit OS=Xanthomonas campestris pv.
vesicatoria (strain 85-10) GN=xseA PE=3 SV=1
Length = 445
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 172 RPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKFRLGARVLQKGCREARIKEAKSEAF 231
RP +G L+ TLKD + +F S+W++ + R G RVL +G + EA+ +
Sbjct: 40 RP-ASGHLYFTLKDARAQIRCAMFKPKSTWLKFQP-REGLRVLARG--RLTLYEARGDYQ 95
Query: 232 VVKDHRGELNKKHYPPSLDDDIWRLEKIAKDGKYHERLAKKGVYNVK 278
+V DH E + + D+ RLA +G+++ +
Sbjct: 96 LVLDHMEEAGEGALRRAFDE-------------LRARLAAEGLFDAE 129
>sp|Q2S0V0|GUAA_SALRD GMP synthase [glutamine-hydrolyzing] OS=Salinibacter ruber (strain
DSM 13855 / M31) GN=guaA PE=3 SV=1
Length = 526
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 122 PISKTRVTSGPYSSMKVEILVLNGDFGSDDHEN-----------WTEREFLE---KIVRE 167
P++ R T GPY ++ V++ D+G EN WT F+E + +R+
Sbjct: 161 PVAAVRDTDGPYYGVQFHPEVVHTDYGRQILENFAHAICGCSGDWTPASFVEEQTETIRD 220
Query: 168 REGKRPLVTG 177
R G R ++ G
Sbjct: 221 RVGDRHVILG 230
>sp|Q8PJW7|EX7L_XANAC Exodeoxyribonuclease 7 large subunit OS=Xanthomonas axonopodis pv.
citri (strain 306) GN=xseA PE=3 SV=1
Length = 445
Score = 32.3 bits (72), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 172 RPLVTGELHITLKDGVGILSDIVFTDNSSWIRCRKF--RLGARVLQKGCREARIKEAKSE 229
RP +G L+ TLKD + +F S+W+ KF R G RVL +G + EA+ +
Sbjct: 40 RP-ASGHLYFTLKDARAQIRCAMFKPKSTWL---KFQPREGLRVLARG--RLTLYEARGD 93
Query: 230 AFVVKDHRGELNKKHYPPSLDDDIWRL 256
+V DH E + + D+ RL
Sbjct: 94 YQLVLDHMEEAGEGALRRAFDELRARL 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,851,383
Number of Sequences: 539616
Number of extensions: 9822611
Number of successful extensions: 22479
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 22472
Number of HSP's gapped (non-prelim): 26
length of query: 560
length of database: 191,569,459
effective HSP length: 123
effective length of query: 437
effective length of database: 125,196,691
effective search space: 54710953967
effective search space used: 54710953967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)