Query 008593
Match_columns 560
No_of_seqs 138 out of 160
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 07:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 94.6 0.011 3.8E-07 48.2 1.6 60 249-313 5-65 (70)
2 2kz3_A Putative uncharacterize 90.2 0.16 5.6E-06 42.8 2.9 40 266-308 17-56 (83)
3 1b22_A DNA repair protein RAD5 85.5 0.51 1.7E-05 41.9 3.2 59 252-313 24-82 (114)
4 2i1q_A DNA repair and recombin 83.5 0.34 1.2E-05 47.8 1.4 58 251-313 3-60 (322)
5 3lda_A DNA repair protein RAD5 80.0 1.1 3.8E-05 46.9 3.8 60 251-313 81-140 (400)
6 2z43_A DNA repair and recombin 75.9 0.55 1.9E-05 46.9 0.0 57 252-313 13-69 (324)
7 1pzn_A RAD51, DNA repair and r 72.3 1.6 5.6E-05 44.3 2.5 57 252-313 36-92 (349)
8 1v5w_A DMC1, meiotic recombina 68.7 1 3.5E-05 45.5 0.0 59 252-313 26-84 (343)
9 3mab_A Uncharacterized protein 67.7 1.3 4.4E-05 38.0 0.5 76 253-364 6-81 (93)
10 3im1_A Protein SNU246, PRE-mRN 58.7 6.6 0.00023 39.5 3.8 55 252-311 158-212 (328)
11 2q0z_X Protein Pro2281; SEC63, 49.2 15 0.00051 37.1 4.6 55 252-311 162-216 (339)
12 1jx4_A DNA polymerase IV (fami 45.8 9.1 0.00031 38.7 2.4 53 253-313 180-233 (352)
13 3pzp_A DNA polymerase kappa; D 45.7 13 0.00045 40.2 3.7 52 252-311 339-390 (517)
14 3osn_A DNA polymerase IOTA; ho 45.5 13 0.00044 39.0 3.6 52 253-311 236-287 (420)
15 4dez_A POL IV 1, DNA polymeras 44.5 9.4 0.00032 38.7 2.2 39 253-296 180-218 (356)
16 2aq4_A DNA repair protein REV1 41.8 20 0.0007 37.5 4.4 53 253-311 243-297 (434)
17 1t94_A Polymerase (DNA directe 41.8 16 0.00055 38.5 3.6 51 252-310 283-333 (459)
18 3bq0_A POL IV, DBH, DNA polyme 41.7 11 0.00037 38.2 2.2 53 253-313 181-234 (354)
19 1z3e_B DNA-directed RNA polyme 37.0 21 0.0007 29.3 2.7 35 267-304 22-56 (73)
20 1u9l_A Transcription elongatio 35.6 24 0.0008 28.6 2.9 51 260-313 13-63 (70)
21 3k4g_A DNA-directed RNA polyme 34.3 24 0.00082 29.9 2.8 36 267-305 25-60 (86)
22 3bqs_A Uncharacterized protein 31.9 20 0.0007 30.5 2.0 76 252-363 5-80 (93)
23 4f4y_A POL IV, DNA polymerase 30.9 16 0.00054 37.5 1.4 51 253-310 181-231 (362)
24 3ukx_C Bimax2 peptide; arm rep 26.6 51 0.0017 22.3 2.7 23 3-25 3-25 (28)
25 3gfk_B DNA-directed RNA polyme 25.1 23 0.00079 29.6 1.1 35 267-304 29-63 (79)
26 3gqc_A DNA repair protein REV1 24.1 36 0.0012 36.9 2.6 40 252-296 316-355 (504)
27 2va8_A SSO2462, SKI2-type heli 22.1 42 0.0014 36.5 2.8 48 255-310 661-708 (715)
28 4ecq_A DNA polymerase ETA; tra 20.1 38 0.0013 35.6 1.8 52 253-311 255-307 (435)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=94.61 E-value=0.011 Score=48.18 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=51.9
Q ss_pred CCcchhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcc-cc
Q 008593 249 LDDDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAAT-CV 313 (560)
Q Consensus 249 L~DeVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAkt-Cv 313 (560)
+.|++-.|++|+..-+ ++|.++||+||+|+..+ +++.|..|.|+|...=+.++.-|+. |=
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~gise~kA~~ii~aAr~~~w 65 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIEGLTDEKAGALIMAARNICW 65 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSSSCCHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHccCCCHHHHHHHHHHHHHccC
Confidence 5678889998887655 89999999999987654 8889999999999999999999987 64
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=90.21 E-value=0.16 Score=42.81 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=32.2
Q ss_pred hhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHh
Q 008593 266 HERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEH 308 (560)
Q Consensus 266 hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~H 308 (560)
-++|.++||.||+||+. .|+.+|-+++|+|-+.=-.+..|
T Consensus 17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 17 IQLLRSHRIKTVVDLVS---ADLEEVAQKCGLSYKALVALRRV 56 (83)
T ss_dssp HHHHHHTTCCCHHHHTT---SCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHh---CCHHHHHHHhCCCHHHHHHHHHH
Confidence 47899999999999975 69999999999886655444444
No 3
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=85.46 E-value=0.51 Score=41.87 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=50.9
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV 313 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv 313 (560)
+|.+|+..|-.-+.-++|.++|++||++. ...++..|.++-|+|...=+.+++=|+.++
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIKGISEAKADKILAEAAKLV 82 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTTTCSTTHHHHHHHHHHHHS
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHccCCCHHHHHHHHHHHHHHc
Confidence 69999966544466799999999999976 456889999999999999999999999887
No 4
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.46 E-value=0.34 Score=47.83 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=46.5
Q ss_pred cchhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593 251 DDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV 313 (560)
Q Consensus 251 DeVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv 313 (560)
+++..|++|+.. +-++|.++||+||+||+.+ ++..|-++.|+|.+.=+.+++.|+.+.
T Consensus 3 ~~~~~l~gi~~~--~~~kL~~~gi~t~~~~~~~---~~~~L~~~~gis~~~a~~~i~~a~~~~ 60 (322)
T 2i1q_A 3 DNLTDLPGVGPS--TAEKLVEAGYIDFMKIATA---TVGELTDIEGISEKAAAKMIMGARDLC 60 (322)
T ss_dssp --CTTSTTCCHH--HHHHHHHHTCCSHHHHHTC---CHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred ccHhhcCCCCHH--HHHHHHHcCCCcHHHHHhC---CHHHHHHhhCcCHHHHHHHHHHHHHhh
Confidence 467788866654 5599999999999999854 678899999999888888888888775
No 5
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.01 E-value=1.1 Score=46.88 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=50.4
Q ss_pred cchhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593 251 DDIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV 313 (560)
Q Consensus 251 DeVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv 313 (560)
.+|-+|+..|-.-..-++|.++||+||++|+. .++..|.+++|+|...=+.+++.|++++
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~gis~~~~~~i~~~a~~~~ 140 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIKGISEAKADKLLNEAARLV 140 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTSTTCCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 46888988555445569999999999999985 5889999999999988888889988776
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.93 E-value=0.55 Score=46.86 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV 313 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv 313 (560)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|.++.|+|...=+.+++.|..+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAAGIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp --------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhhCCCHHHHHHHHHHHHhhc
Confidence 67888877765 4489999999999999854 566788888888877777888887665
No 7
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.28 E-value=1.6 Score=44.28 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=46.8
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV 313 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv 313 (560)
++.+|..|+. ..-++|.++||+||++++. .++..|.++.|+|...=+.+++.|.++.
T Consensus 36 ~l~~l~Gi~~--~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~~~s~~~~~~~l~~~~~~~ 92 (349)
T 1pzn_A 36 SIEDLPGVGP--ATAEKLREAGYDTLEAIAV---ASPIELKEVAGISEGTALKIIQAARKAA 92 (349)
T ss_dssp CSSCCTTCCH--HHHHHHHTTTCCSHHHHHT---CCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred cHHHcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHhhcCCCHHHHHHHHHHHhhhc
Confidence 4667765554 5679999999999999875 4788999999999877788899998776
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.72 E-value=1 Score=45.50 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=0.0
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV 313 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv 313 (560)
++++|+.-|-.=..-++|.++||+||++|+.. ++.+|.++.|+|...=+.+++.|..+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~---~~~~l~~~~~is~~~~~~~~~~a~~~~ 84 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMT---TRRALCNVKGLSEAKVDKIKEAANKLI 84 (343)
T ss_dssp --------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhhCCCHHHHHHHHHHHHhhc
Confidence 68889844444445589999999999999854 567777888877776677777776654
No 9
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=67.75 E-value=1.3 Score=38.02 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=52.3
Q ss_pred hhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccccCCCceEEEecCceEEEEc
Q 008593 253 IWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLLN 332 (560)
Q Consensus 253 VwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv~~~~kly~y~~~~v~l~FN 332 (560)
+..|-+||+.-. +.|.+.||.||+||..+= +.+.|..+.++-.+ +-+|
T Consensus 6 L~dLPNig~~~e--~~L~~~GI~t~~~Lr~~G-------------a~~ay~rLk~~~~~-----------------~~~~ 53 (93)
T 3mab_A 6 LSELPNIGKVLE--QDLIKAGIKTPVELKDVG-------------SKEAFLRIWENDSS-----------------VCMS 53 (93)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCSHHHHHHHC-------------HHHHHHHHHHHCTT-----------------CCHH
T ss_pred HhhCCCCCHHHH--HHHHHcCCCCHHHHHhCC-------------HHHHHHHHHHhCCC-----------------CCHH
Confidence 445666776544 789999999999998762 33566666554222 2268
Q ss_pred cceeEEeeeeCCeeeecCCCCChhhHHHHHHH
Q 008593 333 SIYKLVAVTFDGENCVHPNDLAFPQKISVENL 364 (560)
Q Consensus 333 ~i~~lVGa~~~g~~y~~~d~L~~~qk~~V~~l 364 (560)
..|.|+||+-|= ....|++.+|....++
T Consensus 54 ~L~aL~gAi~G~----~w~~l~~~~K~~L~~~ 81 (93)
T 3mab_A 54 ELYALEGAVQGI----RWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHHHTS----CGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----cHHHCCHHHHHHHHHH
Confidence 889999999873 3678888888766544
No 10
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=58.67 E-value=6.6 Score=39.49 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=44.5
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcc
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAAT 311 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAkt 311 (560)
...-|.+|+.+-+ ++|.++||.|++|+.. .+++++.++|+++++.-+.+.+-|..
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 4567888887644 6799999999999865 48999999999998888887776654
No 11
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=49.20 E-value=15 Score=37.13 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=43.7
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcc
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAAT 311 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAkt 311 (560)
...-|.+|+.+- -++|.++||.|++||.. .++.++.++||+++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~~--~~~l~~~~i~s~~~l~~---~~~~e~~~ll~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSEH--IKRCTDKGVESVFDIME---MEDEERNALLQLTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHHH--HHHHHHTTCCSHHHHHH---SCHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHHH--HHHHHhcCCCCHHHHHh---CCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 567788888753 47899999999999875 78999999999988766776665543
No 12
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=45.76 E-value=9.1 Score=38.74 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=39.9
Q ss_pred hhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCccc-HHHHHHhhcccc
Q 008593 253 IWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKT-WETIVEHAATCV 313 (560)
Q Consensus 253 VwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~-We~~v~HAktCv 313 (560)
|..|-+||+ ..-++|...||+|++|+.+ .++..|++.+| +. ...+.+||+--+
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG---~~~g~~l~~~a~G~d 233 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIG---EAKAKYLISLARDEY 233 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHC---HHHHHHHHHHHTTCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcC---hhHHHHHHHHhCCCC
Confidence 566666775 4568999999999999874 68899999999 33 556667776433
No 13
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=45.66 E-value=13 Score=40.15 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=39.2
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcc
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAAT 311 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAkt 311 (560)
.|-+|-+||+.+. ++|...||.|++|+..+ +..|+..+| ...|..+.++|.-
T Consensus 339 PV~kl~GIG~~t~--~~L~~lGI~TigDL~~~----~~~L~~~fG--~~~~~~l~~~a~G 390 (517)
T 3pzp_A 339 PIRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFS--ETSWHYFLHISLG 390 (517)
T ss_dssp BGGGSTTCCHHHH--HHHHHTTCCBHHHHHHH----HHHHHHHSC--HHHHHHHHHHHTT
T ss_pred ChhhhccccHHHH--HHHHHhCCCcHHHHHhh----HHHHHHHhC--hHHHHHHHHHHcC
Confidence 4666678887555 89999999999999986 357887777 3457777777653
No 14
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=45.50 E-value=13 Score=39.01 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=37.6
Q ss_pred hhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcc
Q 008593 253 IWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAAT 311 (560)
Q Consensus 253 VwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAkt 311 (560)
|-+|-+||+ ..-++|...||.|++|+.+ .++..|++.||. +....+.+||.-
T Consensus 236 v~~l~GIG~--~t~~~L~~lGI~TigdLa~---~~~~~L~~~fG~--~~g~~L~~~a~G 287 (420)
T 3osn_A 236 IKEIPGIGY--KTAKCLEALGINSVRDLQT---FSPKILEKELGI--SVAQRIQKLSFG 287 (420)
T ss_dssp GGGSTTCCH--HHHHHHHHTTCCSHHHHHH---SCHHHHHHHHHH--HHHHHHHHHHTT
T ss_pred HHHccCCCH--HHHHHHHHhCCCcHHHHhh---CCHHHHHHHhCc--hHHHHHHHHhcC
Confidence 444445555 3568999999999999876 478999999992 245566677753
No 15
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=44.52 E-value=9.4 Score=38.69 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=31.7
Q ss_pred hhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhc
Q 008593 253 IWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIIS 296 (560)
Q Consensus 253 VwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLg 296 (560)
|-.|-+||+.- -++|...||+|++|+. ..++..|++.||
T Consensus 180 v~~l~GiG~~~--~~~L~~~GI~Ti~dL~---~~~~~~L~~~fG 218 (356)
T 4dez_A 180 PDALWGVGPKT--TKKLAAMGITTVADLA---VTDPSVLTTAFG 218 (356)
T ss_dssp GGGSTTCCHHH--HHHHHHTTCCSHHHHH---TSCHHHHHHHHC
T ss_pred HHHHcCCchhH--HHHHHHcCCCeecccc---cCCHHHHHHHhC
Confidence 55556777754 4889999999999986 458899999999
No 16
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=41.77 E-value=20 Score=37.49 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=39.5
Q ss_pred hhhhhhhhccchhhhhHhh--CCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcc
Q 008593 253 IWRLEKIAKDGKYHERLAK--KGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAAT 311 (560)
Q Consensus 253 VwRLekIgKdG~~hk~L~~--~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAkt 311 (560)
|-.|-+||+ ..-++|.. .||+|++|+.+++ ++..|++.||- +....+..||+-
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~--~~g~~l~~~a~G 297 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS--KLGMKIHLALQG 297 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS--SHHHHHHHHTTT
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH--HHHHHHHHHhcC
Confidence 555556665 45589999 8999999999875 78999999982 245556666653
No 17
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=41.76 E-value=16 Score=38.47 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=38.1
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhc
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAA 310 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAk 310 (560)
.|-+|-+||+.+ .++|...||+|++|+.++ +..|++.+| .+.|..+.++|+
T Consensus 283 pv~~l~GiG~~~--~~~L~~lGI~T~gdL~~~----~~~L~~~fG--~~~~~~l~~~a~ 333 (459)
T 1t94_A 283 PIRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS--ETSWHYFLHISL 333 (459)
T ss_dssp BGGGCTTSCHHH--HHHHHHTTCCBHHHHHHT----HHHHHHHSC--HHHHHHHHHHHT
T ss_pred CHHhcCCcCHHH--HHHHHHcCCCcHHHHHhh----HHHHHHHhC--hHhHHHHHHHHc
Confidence 367777788654 489999999999998874 356999888 234566666776
No 18
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=41.74 E-value=11 Score=38.16 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=39.8
Q ss_pred hhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCccc-HHHHHHhhcccc
Q 008593 253 IWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKT-WETIVEHAATCV 313 (560)
Q Consensus 253 VwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~-We~~v~HAktCv 313 (560)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.+| +. ...+.+||+--+
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG---~~~g~~l~~~a~G~d 234 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITG---KAKALYLLKLAQNKY 234 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHC---HHHHHHHHHHHTTCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHC---HHHHHHHHHHhCCCC
Confidence 445556665 4568999999999999875 68899999999 33 566777776443
No 19
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=37.00 E-value=21 Score=29.26 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=23.7
Q ss_pred hhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHH
Q 008593 267 ERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWET 304 (560)
Q Consensus 267 k~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~ 304 (560)
.-|..+||+||+|+++. .++.|.++=|+-.|.-+.
T Consensus 22 NcLkragI~Tv~dL~~~---s~~dLlki~n~G~kSl~E 56 (73)
T 1z3e_B 22 NCLKRAGINTVQELANK---TEEDMMKVRNLGRKSLEE 56 (73)
T ss_dssp HHHHHTTCCBHHHHHTS---CHHHHHTSTTCCHHHHHH
T ss_pred HHHHHcCCCcHHHHHcC---CHHHHHHcCCCCHHHHHH
Confidence 45889999999998764 566666664444444333
No 20
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=35.62 E-value=24 Score=28.61 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=42.4
Q ss_pred hccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccc
Q 008593 260 AKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCV 313 (560)
Q Consensus 260 gKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv 313 (560)
|=+-..-++|..+|++||++. .+.+++.|-+|-|+|...=+.+.+-|+..+
T Consensus 13 gI~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~G~dE~~a~~l~~~A~~~l 63 (70)
T 1u9l_A 13 DIDEDFATVLVEEGFSTLEEL---AYVPMKELLEIEGLDEPTVEALRERAKNAL 63 (70)
T ss_dssp TCCHHHHHHHHHTTCCCHHHH---HHSCHHHHTTSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCcCcHHHH---HcCCHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 334456789999999999964 566889999999999999999999888765
No 21
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=34.30 E-value=24 Score=29.90 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=23.1
Q ss_pred hhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHH
Q 008593 267 ERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETI 305 (560)
Q Consensus 267 k~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~ 305 (560)
.-|..+||+||+|++.. +++.|.++=++-.|.-+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~n~G~KSl~EI 60 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTPNLGXXSLTEI 60 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhccccCcccHHHH
Confidence 45999999999998875 4445555533444444433
No 22
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=31.91 E-value=20 Score=30.50 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=49.4
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcccccCCCceEEEecCceEEEE
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAATCVVNDGKLFAFTGDGIILLL 331 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAktCv~~~~kly~y~~~~v~l~F 331 (560)
++..|-.||+.- -+.|.+.||+||+||..+= +.++|..+.+.-.+ +.+
T Consensus 5 ~L~~LPNiG~~~--e~~L~~vGI~s~e~L~~~G-------------a~~ay~rL~~~~~~-----------------~c~ 52 (93)
T 3bqs_A 5 NLSELPNIGKVL--EQDLIKAGIKTPVELKDVG-------------SKEAFLRIWENDSS-----------------VCM 52 (93)
T ss_dssp CGGGSTTCCHHH--HHHHHHTTCCSHHHHHHHH-------------HHHHHHHHHTTCTT-----------------CCH
T ss_pred HhhcCCCCCHHH--HHHHHHcCCCCHHHHHhCC-------------HHHHHHHHHHHCCC-----------------CCH
Confidence 344566677643 4789999999999998763 22455555543111 122
Q ss_pred ccceeEEeeeeCCeeeecCCCCChhhHHHHHH
Q 008593 332 NSIYKLVAVTFDGENCVHPNDLAFPQKISVEN 363 (560)
Q Consensus 332 N~i~~lVGa~~~g~~y~~~d~L~~~qk~~V~~ 363 (560)
+..|.|+||+-|= ....|++..|....+
T Consensus 53 ~~L~aL~gAi~G~----~w~~l~~~~K~~L~~ 80 (93)
T 3bqs_A 53 SELYALEGAVQGI----RWHGLDEAKKIELKK 80 (93)
T ss_dssp HHHHHHHHHHHTS----CGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CHHHCCHHHHHHHHH
Confidence 7788888888662 356788888776544
No 23
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=30.94 E-value=16 Score=37.46 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=36.3
Q ss_pred hhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhc
Q 008593 253 IWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAA 310 (560)
Q Consensus 253 VwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAk 310 (560)
|..|-+||+. .-++|...||.|++|+.+ .++..|++.||- +....+..+|+
T Consensus 181 v~~l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~--~~g~~l~~~a~ 231 (362)
T 4f4y_A 181 IDEIPGIGSV--LARRLNELGIQKLRDILS---KNYNELEKITGK--AKALYLLKLAQ 231 (362)
T ss_dssp STTSTTCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHCH--HHHHHHHHHHT
T ss_pred hhhccCCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhCh--HHHHHHHHHhc
Confidence 4445566665 448999999999999764 588999999981 23444555554
No 24
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=26.56 E-value=51 Score=22.30 Aligned_cols=23 Identities=17% Similarity=-0.015 Sum_probs=9.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCC
Q 008593 3 QSKMVPKRPFDDDGFGVLVPEPR 25 (560)
Q Consensus 3 ~~~~~~kr~~~~~~~~~~~~~~~ 25 (560)
+-..+.||.-+=+++|.|..||+
T Consensus 3 rrrrrrkrkrewdddddppkkrr 25 (28)
T 3ukx_C 3 RRRRRRKRKREWDDDDDPPKKRR 25 (28)
T ss_dssp ---CCCCCCCCCCCSSSCCSCCC
T ss_pred hhHHHHHhhcccccCCCchhhhh
Confidence 33344455544444555544443
No 25
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=25.06 E-value=23 Score=29.56 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=22.4
Q ss_pred hhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHH
Q 008593 267 ERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWET 304 (560)
Q Consensus 267 k~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~ 304 (560)
.-|..+||+||+|++.. +++.|.++=++-.|.-+.
T Consensus 29 NcLk~agI~Tv~dL~~~---se~dLlki~n~G~kSl~E 63 (79)
T 3gfk_B 29 NCLKRAGINTVQELANK---TEEDMMKVRNLGRKSLEE 63 (79)
T ss_dssp HHHHHTTCCBHHHHTTC---CHHHHTTSTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHhC---CHHHHHHcCCCCHhHHHH
Confidence 55999999999998764 555555553333333333
No 26
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=24.10 E-value=36 Score=36.87 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=31.6
Q ss_pred chhhhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhc
Q 008593 252 DIWRLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIIS 296 (560)
Q Consensus 252 eVwRLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLg 296 (560)
.|..|-+||+. .-++|...||.|++|+. ..++..|++.||
T Consensus 316 PV~~l~GIG~~--t~~kL~~lGI~TigDLa---~~~~~~L~~~fG 355 (504)
T 3gqc_A 316 LVTNLPGVGHS--MESKLASLGIKTCGDLQ---YMTMAKLQKEFG 355 (504)
T ss_dssp BGGGSTTCCHH--HHHHHHHTTCCBHHHHT---TSCHHHHHHHHC
T ss_pred ChhHhhCcCHH--HHHHHHHcCCCcHHHHH---hccHHHHHHhhC
Confidence 34555566663 45899999999999986 468899999999
No 27
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=22.15 E-value=42 Score=36.53 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=36.1
Q ss_pred hhhhhhccchhhhhHhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhc
Q 008593 255 RLEKIAKDGKYHERLAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAA 310 (560)
Q Consensus 255 RLekIgKdG~~hk~L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAk 310 (560)
+|.+|+.. ..++|.++||.|++|+. .|+.+|.++|| .+.-+.+++-|+
T Consensus 661 qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~--~~~~~~i~~~~~ 708 (715)
T 2va8_A 661 QISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG--QKLGEKVVQEAA 708 (715)
T ss_dssp TSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC--HHHHHHHHHHHH
T ss_pred hCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC--hhHHHHHHHHHH
Confidence 44444443 45789999999999966 68999999998 677777777554
No 28
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=20.14 E-value=38 Score=35.56 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=34.9
Q ss_pred hhhhhhhhccchhhhh-HhhCCCccHHHHHHHhcCChhHHHHHhcCCcccHHHHHHhhcc
Q 008593 253 IWRLEKIAKDGKYHER-LAKKGVYNVKDFLRMHTTDPGSLCKIISASNKTWETIVEHAAT 311 (560)
Q Consensus 253 VwRLekIgKdG~~hk~-L~~~gI~tV~dFLrl~~~d~~kLr~iLgms~k~We~~v~HAkt 311 (560)
|-.|-.||+. .-++ |...||.|++|+.+ .++..|++.|| .+.-..+.+||+-
T Consensus 255 v~~l~GiG~~--~~~~lL~~lGI~TigdLa~---~~~~~L~~~fG--~~~g~~L~~~a~G 307 (435)
T 4ecq_A 255 IRKIRSLGGK--LGASVIEILGIEYMGELTQ---FTESQLQSHFG--EKNGSWLYAMCRG 307 (435)
T ss_dssp GGGSTTCSSH--HHHHHHHHHTCCBGGGGGG---SCHHHHHHHHC--HHHHHHHHHHTTT
T ss_pred HHHhcCCCHH--HHHHHHHHcCCCcHHHHhh---CCHHHHHHHhC--ccHHHHHHHHhhC
Confidence 4455566643 3244 89999999999765 58899999999 2233344466654
Done!