Query 008594
Match_columns 560
No_of_seqs 44 out of 46
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 07:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008594.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008594hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ek9a_ f.5.1.1 (A:) Integral 31.8 23 0.0017 30.7 4.7 38 151-188 332-369 (428)
2 d1yvia1 a.24.10.2 (A:2-143) Hi 23.3 47 0.0034 26.6 4.8 72 26-100 55-135 (142)
3 d1xzpa1 a.24.25.1 (A:118-211,A 20.6 96 0.007 25.2 6.3 51 44-101 32-84 (173)
4 d1g7oa1 a.45.1.1 (A:76-215) Gl 20.2 61 0.0045 27.2 5.1 47 39-85 56-111 (140)
5 d1ykha1 a.252.1.2 (A:111-205) 19.2 2E+02 0.015 22.6 8.6 91 44-175 2-94 (95)
6 d1urua_ a.238.1.1 (A:) Amphiph 19.2 1.3E+02 0.0095 23.7 6.8 43 41-88 14-56 (217)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 18.7 73 0.0053 24.8 5.0 23 156-178 93-115 (133)
8 d3bi1a1 a.48.2.1 (A:594-750) G 18.1 27 0.002 28.4 2.2 48 122-176 108-155 (157)
9 d1s4bp_ d.92.1.5 (P:) Neurolys 18.0 3.7E+02 0.027 26.3 11.2 43 42-86 8-50 (654)
10 d2a0ba_ a.24.10.1 (A:) Aerobic 17.4 99 0.0072 23.2 5.3 68 28-99 39-114 (118)
No 1
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=31.84 E-value=23 Score=30.74 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCC
Q 008594 151 SQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQG 188 (560)
Q Consensus 151 ~qiEklqKRId~iNkacE~aekvIa~aRk~~e~gtRqG 188 (560)
..++.+.++|+...+.++.+++.+..+++.|+.|...-
T Consensus 332 ~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~y~~G~~s~ 369 (428)
T d1ek9a_ 332 NNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTI 369 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcH
Confidence 36677788899999999999999999999999876543
No 2
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=23.28 E-value=47 Score=26.57 Aligned_cols=72 Identities=10% Similarity=0.219 Sum_probs=54.0
Q ss_pred chhhhhcHHHHhh-hcHHHHHHHHHHHHHH--------HHHHHHhhhhhcccCCCCChhhhhhhhhhcchhhhhhHHHHh
Q 008594 26 VAVERLNQAVVQQ-LNLEAVKTRAISLFKA--------ISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIR 96 (560)
Q Consensus 26 ~~~e~ln~~V~~Q-lNLEAVraRA~DLkka--------IsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEIk 96 (560)
.-++.|..++... .+++.|+.-+-.||.+ |..+...+|... ...+|+.+.+-|..|-.++..+..++.
T Consensus 55 ~~l~~l~~al~~~~~D~~~~~~~aH~LKGss~~lGa~~l~~~~~~lE~~~---~~~~~~~~~~~~~~L~~e~~~l~~~L~ 131 (142)
T d1yvia1 55 RIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFC---QDKSRDGCLMALAVVRNDFYDLRNKFQ 131 (142)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHhhccHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666676654 4788888888888865 566778888887 356899999999999998888887776
Q ss_pred hhhc
Q 008594 97 KVSK 100 (560)
Q Consensus 97 pvLr 100 (560)
..++
T Consensus 132 ~~l~ 135 (142)
T d1yvia1 132 TMLQ 135 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 3
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.57 E-value=96 Score=25.16 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccc--CCCCChhhhhhhhhhcchhhhhhHHHHhhhhcc
Q 008594 44 VKTRAISLFKAISRILEDFDAYART--NTTPKWQDILGQYSMVNLELFNIVDEIRKVSKA 101 (560)
Q Consensus 44 VraRA~DLkkaIsriI~~LE~e~~t--N~t~kWpDVLdqFSVIS~QL~nLvEEIkpvLr~ 101 (560)
+..+++.|++.|-.++-.+|.+-+. +....+.++... |..+.++++++++.
T Consensus 32 ls~~i~~ir~~L~~l~a~iEa~iDf~ee~~~~~~~~~~~-------l~~i~~~l~~li~~ 84 (173)
T d1xzpa1 32 LRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGEVVTR-------LERIKEKLTEELKK 84 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTCCCCHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3445555555554444444443321 123444444444 44555555554443
No 4
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=20.25 E-value=61 Score=27.25 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=32.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhhhhhcc----cCCCCChhhh-----hhhhhhcc
Q 008594 39 LNLEAVKTRAISLFKAISRILEDFDAYAR----TNTTPKWQDI-----LGQYSMVN 85 (560)
Q Consensus 39 lNLEAVraRA~DLkkaIsriI~~LE~e~~----tN~t~kWpDV-----LdqFSVIS 85 (560)
.|+|..+++...|.+.|...|..|+..-. .|+.+.|+|| |.+|++|-
T Consensus 56 g~f~~~l~~t~~li~~l~~~L~~L~~ll~~~~~~~~~ls~DDi~lFp~LR~ltivk 111 (140)
T d1g7oa1 56 GNFADLLAHSDGLIKNISDDLRALDKLIVKPNAVNGELSEDDIQLFPLLRNLTLVA 111 (140)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCTTSSCCHHHHHHHHHHHHHHTST
T ss_pred CCHHHHHHcCHHHHHHHHHHHHHHHHHHhCccccCCCccHHHHHHHHHHhhhHhhc
Confidence 47889999998888888888888874321 3455677776 45555443
No 5
>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.25 E-value=2e+02 Score=22.62 Aligned_cols=91 Identities=15% Similarity=0.278 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc--cCCCCChhhhhhhhhhcchhhhhhHHHHhhhhcceEeeeccCCCCCCCcchhhh
Q 008594 44 VKTRAISLFKAISRILEDFDAYAR--TNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVML 121 (560)
Q Consensus 44 VraRA~DLkkaIsriI~~LE~e~~--tN~t~kWpDVLdqFSVIS~QL~nLvEEIkpvLr~FvVlPlnVnaeNa~IVPdmL 121 (560)
+..|..+||+....++..|--.-+ +..-..|++=++..+++-..+..|..|.+|.
T Consensus 2 ~~~k~~ELkkln~sll~nfleLl~~l~~~P~~~~~kvedl~~LfiN~HhllNeyRPh----------------------- 58 (95)
T d1ykha1 2 YQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPH----------------------- 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHHHHTHHH-----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCccchHhhHHHHHHHHHHHHHHHHccCcH-----------------------
Confidence 346788888888777655433221 1122345554444444444444444444441
Q ss_pred hcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhHHHHHH
Q 008594 122 SSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLA 175 (560)
Q Consensus 122 RTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKRId~iNkacE~aekvIa 175 (560)
+.|+-+..-| ..++|.-+..|+.+.++|+.+.++|+
T Consensus 59 -------------QAResLi~lm-----e~Ql~~kr~~~~~i~~~~~~~~~~L~ 94 (95)
T d1ykha1 59 -------------QSRESLIMLL-----EEQLEYKRGEIREIEQVCKQVHDKLT 94 (95)
T ss_dssp -------------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------------hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222221 12566667788888888888888774
No 6
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=19.19 E-value=1.3e+02 Score=23.73 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCChhhhhhhhhhcchhh
Q 008594 41 LEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLEL 88 (560)
Q Consensus 41 LEAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL 88 (560)
.+.+..+.+++...|.+++..++.+.+ .|.+++.....++..+
T Consensus 14 fe~~~~~~~~~e~~l~~l~k~~~~~~~-----~~~~~~~~~~~~~~~l 56 (217)
T d1urua_ 14 FDDHLNNFNRQQASANRLQKEFNNYIR-----CVRAAQAASKTLMDSV 56 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 456777777888888888887777652 5555555555544433
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.70 E-value=73 Score=24.84 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 008594 156 LKSRIDMIGAACESAEKVLADTR 178 (560)
Q Consensus 156 lqKRId~iNkacE~aekvIa~aR 178 (560)
+.+||+.+++..+...+-+++.+
T Consensus 93 l~~ri~~l~~~~~~l~~~~~~~~ 115 (133)
T d1fxkc_ 93 IKSQKNELESTLQKMGENLRAIT 115 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 8
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.07 E-value=27 Score=28.42 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=33.7
Q ss_pred hcccCcchhhhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHH
Q 008594 122 SSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLAD 176 (560)
Q Consensus 122 RTKLlPEmEtee~q~~~ql~~kA~nLP~~~qiEklqKRId~iNkacE~aekvIa~ 176 (560)
.++..|.+ +|.++.+-....-...++.++++|..+..++++|-++|++
T Consensus 108 ~~~~FPgi-------~dAi~~~~~~~~~~~~w~~~~~qi~~~~~~i~~Aa~~L~~ 155 (157)
T d3bi1a1 108 AGESFPGI-------YDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLSE 155 (157)
T ss_dssp EEEESHHH-------HHHHTTGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ccccchhH-------HHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677776 3445544333333457899999999999999998887743
No 9
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.00 E-value=3.7e+02 Score=26.33 Aligned_cols=43 Identities=12% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCCCChhhhhhhhhhcch
Q 008594 42 EAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNL 86 (560)
Q Consensus 42 EAVraRA~DLkkaIsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~ 86 (560)
|.|...++++.+.....|..+... ..+..+|.+++.-+.-++-
T Consensus 8 e~i~~~~~~~i~~~~~~id~I~~~--~~~~~tfen~i~~ld~~~~ 50 (654)
T d1s4bp_ 8 QQIEERTRELIEQTKRVYDQVGTQ--EFEDVSYESTLKALADVEV 50 (654)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC--CGGGCCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCHHHHHHHHHHHHH
Confidence 445555555544444444444332 1245789998887766553
No 10
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=17.42 E-value=99 Score=23.16 Aligned_cols=68 Identities=7% Similarity=0.021 Sum_probs=49.7
Q ss_pred hhhhcHHHHhhhcHHHHHHHHHHHHHH--------HHHHHHhhhhhcccCCCCChhhhhhhhhhcchhhhhhHHHHhhhh
Q 008594 28 VERLNQAVVQQLNLEAVKTRAISLFKA--------ISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVS 99 (560)
Q Consensus 28 ~e~ln~~V~~QlNLEAVraRA~DLkka--------IsriI~~LE~e~~tN~t~kWpDVLdqFSVIS~QL~nLvEEIkpvL 99 (560)
++.|-.++. +-|.+.++.-+-.||.+ |..+...+|... ...+|+++..-+.-|-.++...+++++..|
T Consensus 39 l~~l~~a~~-~~d~~~~~~~aH~LKgsa~~~G~~~l~~~~~~lE~~~---~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l 114 (118)
T d2a0ba_ 39 VSVLESNLT-AQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPD---LPAWEDNVGEWIEEMKEEWRHDVEVLKAWV 114 (118)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTCTT---STTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 45888888888888865 556777788766 355799998888888888888887777644
Done!