Citrus Sinensis ID: 008594

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
MEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ
ccccccccHHHHHHHHHHcccccccHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccccccccccccHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccccccccccHHcccccHHHHHHHcccccccccccccccccccccccccccHccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHccc
*****************************RLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEI*********LLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQAL************VN*****************LPMHLVDLLPVGDGVHTF******************************************************A***************************************************************************************************************************************************************************************************************************************************************
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MEGVAMQDQSQQQQQQQQQLVPPQPVAVERLNQAVVQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEIDDNSKREQLLLGMQNLPIPSQIEKLKSRIDMIGAACESAEKVLADTRKAYCFGTRQGPQILPTLDKGQALKIQEQENLLRAAVNSGEGLRLPGDQRQMTPALPMHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLLQASGAQLIGRSAASPSAATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQQQLLAQQQFRQSQMQGLGQLHDLQGQQKFQQLHGQHQMQFSQPMGHQQFQGRQLASGHVQHGIGQSQLGQGNQLNRHLSQFSGAANSALFNAAQGTSNSQMIPNMSATVSSQSLLPRMQFGLAGNNPQRSHASQMLSDQMFNMGASNPGSMMPIQQQQQQQQQQHNTQGAFGNMQPNAQNLQSNMVALQNAQQNHPNFAQQRQQNQQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Mediator of RNA polymerase II transcription subunit 8 Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Regulator of both plant defense and flowering time. Involved in pollen tube growth.probableQ4V3C1

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4H63, chain H
Confidence level:confident
Coverage over the Query: 40-181,198-208
View the alignment between query and template
View the model in PyMOL
Template: 1M2V, chain B
Confidence level:probable
Coverage over the Query: 302-314
View the alignment between query and template
View the model in PyMOL
Template: 1M2V, chain B
Confidence level:probable
Coverage over the Query: 302-314
View the alignment between query and template
View the model in PyMOL