BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008595
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native
Enzyme
pdb|2VFS|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Xylitol
pdb|2VFT|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sorbitol
pdb|2VFU|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Mannitol
pdb|2VFV|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sulphite
Length = 422
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 34 NVTY-------PTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLIST 86
N+TY P + + LR VA + +V+ + H+ ++A P +L+S
Sbjct: 16 NITYTAKELLRPHSLDALRALVA----DSARVRVLGS-GHSFNEIAEP---GDGGVLLSL 67
Query: 87 AKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGS 146
A L S +D+D A TV GV +L V L++ +SV G ++TG HGS
Sbjct: 68 AGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMASLPHISVAGSVATGTHGS 127
Query: 147 SWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLS 206
G G V+ +V A S + I D A SLG LGV++ + L
Sbjct: 128 ---GVGNGSLASVVREVELVTADGS-----TVVIARGDERFGGAVTSLGALGVVTSLTLD 179
Query: 207 LEPGFK 212
LEP ++
Sbjct: 180 LEPAYE 185
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 405 IRFIKASSAYLGQS--EDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWA 462
IR + A + +L + D++ + + A P V +E+ A + ARPHW
Sbjct: 325 IRTVAADAQWLSPAYGRDTVAAHFTWVEDTAAVLP-----VVRRLEE-ALVPFAARPHWG 378
Query: 463 KNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFG 506
K + ++ Y + F A +DP F++ + +L G
Sbjct: 379 KVFTVPAGELRALYPRLADFGALAGALDPAGKFTNAFVRGVLAG 422
>pdb|3JS8|A Chain A, Solvent-Stable Cholesterol Oxidase
Length = 540
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 38 PTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDV 97
P + +E+ A N KV+ + P + +L+ T + + + ID
Sbjct: 36 PRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDTTRYLTAMSIDA 95
Query: 98 AN--LTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKG--- 152
+ VTA AG+ + L+ +E+ L + AAP +++GGV++ HG++ KG
Sbjct: 96 SGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKGERR 155
Query: 153 ------GAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLS 206
G++ + V+ L+ VV K S YA + + NDP + +G +I E L
Sbjct: 156 LAGASYGSISNLVLSLTAVVYDKASGAYA-LRKFARNDPQIAPLLAHVG-RSLIVEATLQ 213
Query: 207 LEP 209
P
Sbjct: 214 AAP 216
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Query: 35 VTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNID 94
V +PT +++ V A K L + + + L CP ++++ + + T++++ +
Sbjct: 209 VLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILW 268
Query: 95 IDVANLTVTADAGVPLRQLIDRVEEENLSIVAAP-YWEGVSVGGVISTGAHGSSWWGKGG 153
+D NLT +AG+ ++L +++E P E +VGG IST A G G
Sbjct: 269 VDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMK-KNIYG 327
Query: 154 AVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEP 209
+ D V+ + +V P E + R+ + S G LGVI+E + + P
Sbjct: 328 NIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP 383
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Query: 35 VTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNID 94
V +PT +++ V A K L + + + L CP ++++ + + T++++ +
Sbjct: 209 VLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILW 268
Query: 95 IDVANLTVTADAGVPLRQLIDRVEEENLSIVAAP-YWEGVSVGGVISTGAHGSSWWGKGG 153
+D NLT +AG+ ++L +++E P E +VGG IST A G G
Sbjct: 269 VDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMK-KNIYG 327
Query: 154 AVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEP 209
+ D V+ + +V P E + R+ + S G LGVI+E + + P
Sbjct: 328 NIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP 383
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Query: 35 VTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNID 94
V +PT +++ V A K L + + + L CP ++++ + + T++++ +
Sbjct: 209 VLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILW 268
Query: 95 IDVANLTVTADAGVPLRQLIDRVEEENLSIVAAP-YWEGVSVGGVISTGAHGSSWWGKGG 153
+D NLT +AG+ ++L +++E P E +VGG IST A G G
Sbjct: 269 VDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMK-KNIYG 327
Query: 154 AVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEP 209
+ D V+ + +V P E + R+ + S G LGVI+E + + P
Sbjct: 328 NIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP 383
>pdb|2I0K|A Chain A, Cholesterol Oxidase From Brevibacterium Sterolicum-
His121ala Mutant
Length = 561
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 17/222 (7%)
Query: 3 PPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVS 62
P PP N + + AY W + V P T +++ A+++ K++
Sbjct: 9 PTPPNFPNDI--ALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRG 66
Query: 63 KFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVAN--LTVTADAGVPLRQLIDRVEEE 120
+ P + + +L T + I ++ TVTA AG + ++ +++
Sbjct: 67 AMAGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKH 126
Query: 121 NLSIVAAPYWEGVSVGGVISTGAHGSSWWGKG---------GAVHDHVIGLSLVVPAKES 171
+L P +S+GG ++ AHG++ G G++ + V L+ VV
Sbjct: 127 DLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVV--WNG 184
Query: 172 EGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKR 213
YA + + NDP + +LG ++ V + P F++
Sbjct: 185 TTYA-LETYQRNDPRITPLLTNLGRC-FLTSVTMQAGPNFRQ 224
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
pdb|1I19|B Chain B, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
Length = 561
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 17/222 (7%)
Query: 3 PPPPVQCNQTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVS 62
P PP N + + AY W + V P T +++ A+++ K++
Sbjct: 9 PTPPNFPNDI--ALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRG 66
Query: 63 KFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVAN--LTVTADAGVPLRQLIDRVEEE 120
P + + +L T + I ++ TVTA AG + ++ +++
Sbjct: 67 AMHGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKH 126
Query: 121 NLSIVAAPYWEGVSVGGVISTGAHGSSWWGKG---------GAVHDHVIGLSLVVPAKES 171
+L P +S+GG ++ AHG++ G G++ + V L+ VV
Sbjct: 127 DLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVV--WNG 184
Query: 172 EGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKR 213
YA + + NDP + +LG ++ V + P F++
Sbjct: 185 TTYA-LETYQRNDPRITPLLTNLGRC-FLTSVTMQAGPNFRQ 224
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 76 SQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSV 135
+Q+ L+I L+ ID V DAGV L QL+ L + P V+V
Sbjct: 6 AQNGGGLVIDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTV 65
Query: 136 GGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSL- 194
GG I HG + G+ +HV + L+ + G + + D L A V
Sbjct: 66 GGAIGCDIHGKN-HHSAGSFGNHVRSMELLT----ANGEVRHLTPAGPDSDLFWATVGGN 120
Query: 195 GLLGVISEVKLSLEP 209
GL G+I + + P
Sbjct: 121 GLTGIILRATIEMTP 135
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 76 SQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSV 135
+Q+ L+I L++ ID V DAGV L QL+ L + P V+V
Sbjct: 84 AQNGGGLVIDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTV 143
Query: 136 GGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSL- 194
GG I+ HG + G+ +HV + L+ ++G + + D L A V
Sbjct: 144 GGAIACDIHGKN-HHSAGSFGNHVRSMDLLT----ADGEIRHLTPTGEDAELFWATVGGN 198
Query: 195 GLLGVISEVKLSLEP 209
GL G+I + + P
Sbjct: 199 GLTGIIMRATIEMTP 213
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 76 SQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSV 135
+Q+ L+I L+ ID V DAGV L QL+ L + P V+V
Sbjct: 71 AQNGGGLVIDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTV 130
Query: 136 GGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEANDPLLDAAKVSL- 194
GG I HG + G+ +HV + L+ + G + + D L A V
Sbjct: 131 GGAIGCDIHGKNHH-SAGSFGNHVRSMELLT----ANGEVRHLTPAGPDSDLFWATVGGN 185
Query: 195 GLLGVISEVKLSLEP 209
GL G+I + + P
Sbjct: 186 GLTGIILRATIEMTP 200
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 133 VSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI--EANDPLLDAA 190
++VGG +S G G H +S V+ G+ +++ + N L DA
Sbjct: 173 LTVGGTLSNA-------GISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAV 225
Query: 191 KVSLGLLGVISEVKLSLEPGFKRS--ITFNFTD 221
LG GVI+ ++++EP R+ + F +TD
Sbjct: 226 LGGLGQFGVITRARIAVEPAPARARWVRFVYTD 258
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
Query: 31 HVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLD 90
H V P + EE+ AN+ + V V + +T L + ++IS + D
Sbjct: 51 HSPLVLRPGSTEEVVAICKLANEAR--VALVPQGGNT--GLVGGQTPHNGEVVISLKRXD 106
Query: 91 SNIDIDVANLTVTADAGVPLRQLIDRVEE-ENLSIVAAPYWEGVSVGGVISTGAHGSSWW 149
+ID ++ T+T +AG L+++ ++ E + L ++ ++GG +ST A G++
Sbjct: 107 KIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAAL 166
Query: 150 GKGGAVHDHVIGLSLVVP-AKESEGYAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLE 208
G A D +G+ +V+ + +K+ + L D + G LG+I+ L L
Sbjct: 167 AYGLA-RDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLF 225
Query: 209 P 209
P
Sbjct: 226 P 226
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 354 AWDPRINGLF----FYETTAIF-PANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFI 408
+D + NG+ F + +F P+ + ++ KL DL+ F + ++ +
Sbjct: 82 VFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALL 141
Query: 409 KASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLA 468
S L + ++VD + +AD + +++ D W++ P KN L
Sbjct: 142 HESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDF-------VSLNPSLIKNMTLP 194
Query: 469 FLNVQQKYANFSRFLAA--KNQMDPQNMFS 496
+L + F F+++ + +M+ QN+ S
Sbjct: 195 YLKDINR--TFPSFVSSCEEEEMELQNVSS 222
>pdb|1S2X|A Chain A, Crystal Structure Of Cag-Z From Helicobacter Pylori
Length = 206
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 368 TAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKAS 411
T++ +N +DF+R V++LR +NF D+Y +L + AS
Sbjct: 44 TSLKDSNDPQDFLRRVQELRINXQKNFISFDAYYNYLNNLVLAS 87
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 133 VSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI--EANDPLLDAA 190
++VGG +S G G H +S V+ G+ +++ + N L DA
Sbjct: 155 LTVGGTLSNA-------GISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAV 207
Query: 191 KVSLGLLGVISEVKLSLEPGFKRS--ITFNFTD 221
LG GVI+ ++++EP R+ + +TD
Sbjct: 208 LGGLGQFGVITRARIAVEPAPARARWVRLVYTD 240
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 133 VSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI--EANDPLLDAA 190
++VGG +S G G H +S V+ G+ +++ + N L DA
Sbjct: 155 LTVGGTLSNA-------GISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAV 207
Query: 191 KVSLGLLGVISEVKLSLEPGFKRS--ITFNFTD 221
LG GVI+ ++++EP R+ + +TD
Sbjct: 208 LGGLGQFGVITRARIAVEPAPARARWVRLVYTD 240
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 133 VSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI--EANDPLLDAA 190
++VGG +S G G H +S V+ G+ +++ + N L DA
Sbjct: 155 LTVGGTLSNA-------GISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAV 207
Query: 191 KVSLGLLGVISEVKLSLEPGFKRS--ITFNFTD 221
LG GVI+ ++++EP R+ + +TD
Sbjct: 208 LGGLGQFGVITRARIAVEPAPARARWVRLVYTD 240
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 133 VSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI--EANDPLLDAA 190
++VGG +S G G H +S V+ G+ +++ + N L DA
Sbjct: 155 LTVGGTLSNA-------GISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAV 207
Query: 191 KVSLGLLGVISEVKLSLEPGFKRS--ITFNFTD 221
LG GVI+ ++++EP R+ + +TD
Sbjct: 208 LGGLGQFGVITRARIAVEPAPARARWVRLVYTD 240
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 133 VSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI--EANDPLLDAA 190
++VGG +S G G H +S V+ G+ +++ + N L DA
Sbjct: 155 LTVGGTLSNA-------GISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAV 207
Query: 191 KVSLGLLGVISEVKLSLEPGFKRS--ITFNFTD 221
LG GVI+ ++++EP R+ + +TD
Sbjct: 208 LGGLGQFGVITRARIAVEPAPARARWVRLVYTD 240
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 354 AWDPRINGLF----FYETTAIF-PANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFI 408
+D + NG+ F + +F P+ + ++ KL DL+ F + ++ +
Sbjct: 82 VFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALL 141
Query: 409 KASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLA 468
S L + ++VD + +AD + +++ D W++ + P KN L
Sbjct: 142 HESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL-------NPSLIKNMTLP 194
Query: 469 FL-NVQQKYANF 479
+L ++ + + +F
Sbjct: 195 YLKDINRTFPSF 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,161,249
Number of Sequences: 62578
Number of extensions: 717225
Number of successful extensions: 1678
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1638
Number of HSP's gapped (non-prelim): 71
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)