Query 008595
Match_columns 560
No_of_seqs 358 out of 2132
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 14:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01677 pln_FAD_oxido plant- 100.0 3E-117 6E-122 966.4 51.8 547 2-550 1-557 (557)
2 KOG4730 D-arabinono-1, 4-lacto 100.0 1E-100 3E-105 777.8 38.0 491 1-507 18-515 (518)
3 PLN00107 FAD-dependent oxidore 100.0 4.6E-84 1E-88 626.2 21.4 241 313-553 6-256 (257)
4 TIGR01678 FAD_lactone_ox sugar 100.0 2.2E-76 4.8E-81 633.0 43.0 426 20-498 3-438 (438)
5 TIGR01676 GLDHase galactonolac 100.0 1.2E-74 2.5E-79 623.1 43.4 439 18-504 48-540 (541)
6 TIGR01679 bact_FAD_ox FAD-link 100.0 3.8E-74 8.2E-79 615.0 41.5 415 21-505 1-419 (419)
7 PLN02465 L-galactono-1,4-lacto 100.0 2.6E-72 5.6E-77 609.5 40.8 441 18-506 83-572 (573)
8 PLN02441 cytokinin dehydrogena 100.0 1.1E-39 2.4E-44 352.5 36.4 420 21-505 54-519 (525)
9 PF04030 ALO: D-arabinono-1,4- 100.0 9.2E-41 2E-45 336.6 10.1 255 203-503 1-259 (259)
10 COG0277 GlcD FAD/FMN-containin 100.0 3.1E-37 6.8E-42 335.2 26.5 414 22-502 23-457 (459)
11 PLN02805 D-lactate dehydrogena 100.0 1.3E-32 2.8E-37 301.7 32.0 193 30-234 132-333 (555)
12 PRK11230 glycolate oxidase sub 100.0 1.6E-31 3.4E-36 291.5 30.0 201 22-233 46-255 (499)
13 TIGR00387 glcD glycolate oxida 100.0 6.8E-31 1.5E-35 281.6 25.6 189 35-234 1-199 (413)
14 PRK11282 glcE glycolate oxidas 100.0 1.3E-28 2.9E-33 255.9 19.4 182 40-235 3-195 (352)
15 KOG1231 Proteins containing th 99.9 3E-26 6.5E-31 234.7 25.0 181 22-213 54-241 (505)
16 PF01565 FAD_binding_4: FAD bi 99.9 8.5E-25 1.8E-29 199.5 12.2 138 32-181 1-139 (139)
17 KOG1233 Alkyl-dihydroxyacetone 99.9 6.2E-23 1.4E-27 205.7 19.1 213 19-234 148-365 (613)
18 KOG1232 Proteins containing th 99.9 5.6E-24 1.2E-28 213.0 10.9 198 17-220 75-276 (511)
19 PRK11183 D-lactate dehydrogena 99.9 8.4E-23 1.8E-27 218.1 19.0 205 22-234 30-291 (564)
20 PRK13905 murB UDP-N-acetylenol 99.9 9.9E-22 2.2E-26 201.7 14.0 168 21-211 22-193 (298)
21 PRK14652 UDP-N-acetylenolpyruv 99.8 1.1E-18 2.4E-23 178.7 17.1 170 19-211 25-196 (302)
22 TIGR00179 murB UDP-N-acetyleno 99.8 3E-18 6.5E-23 174.4 15.4 172 20-212 3-177 (284)
23 PRK13906 murB UDP-N-acetylenol 99.8 2.6E-18 5.5E-23 176.4 13.6 167 21-210 28-197 (307)
24 PRK12436 UDP-N-acetylenolpyruv 99.8 5.7E-18 1.2E-22 173.8 15.5 167 21-210 28-197 (305)
25 PRK13903 murB UDP-N-acetylenol 99.8 7.2E-18 1.6E-22 175.8 14.7 170 20-211 23-197 (363)
26 KOG1262 FAD-binding protein DI 99.7 8.6E-17 1.9E-21 162.2 15.3 388 82-500 104-522 (543)
27 PRK14649 UDP-N-acetylenolpyruv 99.7 4.7E-17 1E-21 166.3 13.6 171 20-211 11-193 (295)
28 PRK14653 UDP-N-acetylenolpyruv 99.7 1.7E-16 3.7E-21 161.7 13.9 166 20-211 24-194 (297)
29 PRK14650 UDP-N-acetylenolpyruv 99.6 1.7E-15 3.7E-20 154.0 13.3 171 19-212 22-196 (302)
30 PRK00046 murB UDP-N-acetylenol 99.6 1.4E-15 2.9E-20 157.0 12.4 170 19-211 10-189 (334)
31 COG0812 MurB UDP-N-acetylmuram 99.6 2.8E-15 6E-20 150.2 13.8 172 19-210 10-183 (291)
32 PRK14648 UDP-N-acetylenolpyruv 99.6 2.8E-14 6.1E-19 147.1 13.1 132 21-166 21-156 (354)
33 PRK14651 UDP-N-acetylenolpyruv 99.4 1.6E-12 3.4E-17 130.7 13.7 158 20-210 11-170 (273)
34 PRK13904 murB UDP-N-acetylenol 99.2 6.2E-11 1.3E-15 118.0 10.6 156 14-212 4-161 (257)
35 PF09129 Chol_subst-bind: Chol 99.1 8.6E-10 1.9E-14 107.9 11.6 243 228-505 25-321 (321)
36 PF00941 FAD_binding_5: FAD bi 96.9 0.0011 2.4E-08 62.6 4.4 106 32-144 2-117 (171)
37 PRK09799 putative oxidoreducta 96.6 0.0059 1.3E-07 61.6 7.7 102 34-143 4-111 (258)
38 TIGR03312 Se_sel_red_FAD proba 96.3 0.012 2.6E-07 59.3 7.7 102 34-143 3-110 (257)
39 PF09265 Cytokin-bind: Cytokin 96.2 0.01 2.3E-07 60.1 6.4 129 352-497 134-276 (281)
40 TIGR02963 xanthine_xdhA xanthi 96.1 0.019 4.2E-07 62.8 8.9 106 31-143 191-304 (467)
41 PF08031 BBE: Berberine and be 95.2 0.015 3.2E-07 42.7 2.4 29 471-499 14-44 (47)
42 TIGR03195 4hydrxCoA_B 4-hydrox 95.1 0.031 6.7E-07 58.1 5.5 104 33-142 5-117 (321)
43 PRK09971 xanthine dehydrogenas 95.0 0.029 6.3E-07 57.7 4.8 103 34-143 6-119 (291)
44 TIGR03199 pucC xanthine dehydr 94.3 0.042 9.1E-07 55.7 3.8 100 38-142 1-109 (264)
45 PF02913 FAD-oxidase_C: FAD li 93.7 0.065 1.4E-06 52.7 3.8 114 362-496 126-244 (248)
46 PLN00192 aldehyde oxidase 93.2 0.18 3.8E-06 62.3 7.3 108 32-143 233-353 (1344)
47 COG1319 CoxM Aerobic-type carb 92.8 0.34 7.4E-06 49.4 7.5 107 32-144 3-119 (284)
48 PLN02906 xanthine dehydrogenas 92.5 0.23 5E-06 61.2 7.0 104 33-143 229-351 (1319)
49 TIGR02969 mam_aldehyde_ox alde 92.2 0.44 9.5E-06 58.9 8.7 106 33-144 237-360 (1330)
50 COG4630 XdhA Xanthine dehydrog 90.6 0.61 1.3E-05 48.6 6.4 125 32-170 203-337 (493)
51 PF03392 OS-D: Insect pheromon 57.0 6.5 0.00014 33.3 1.6 26 470-497 68-93 (95)
52 KOG0430 Xanthine dehydrogenase 53.5 26 0.00057 42.0 6.2 105 32-146 214-335 (1257)
53 PF03614 Flag1_repress: Repres 50.5 38 0.00083 31.0 5.4 37 35-71 9-45 (165)
54 PF14625 Lustrin_cystein: Lust 37.6 24 0.00052 25.1 1.8 22 523-546 19-40 (45)
55 PF07317 YcgR: Flagellar regul 33.8 1.4E+02 0.0031 25.7 6.4 67 38-124 4-70 (108)
56 PF11478 Tachystatin_B: Antimi 30.5 34 0.00074 23.2 1.4 28 515-544 4-35 (42)
57 PRK04322 peptidyl-tRNA hydrola 29.1 1E+02 0.0022 27.1 4.6 44 22-67 40-83 (113)
58 PF00396 Granulin: Granulin; 27.3 37 0.00081 24.4 1.3 16 523-539 21-36 (43)
59 COG4981 Enoyl reductase domain 26.2 90 0.0019 34.7 4.5 86 30-128 150-246 (717)
60 PF02601 Exonuc_VII_L: Exonucl 25.0 68 0.0015 33.2 3.4 41 32-72 42-92 (319)
61 PTZ00397 macrophage migration 24.6 4.1E+02 0.009 22.8 7.8 84 365-459 4-93 (116)
62 PRK11282 glcE glycolate oxidas 23.1 45 0.00098 35.3 1.6 19 479-497 327-345 (352)
63 TIGR03752 conj_TIGR03752 integ 22.5 52 0.0011 35.9 1.9 50 117-182 278-327 (472)
64 PF04706 Dickkopf_N: Dickkopf 22.4 76 0.0016 23.8 2.2 26 523-550 2-27 (52)
65 COG0351 ThiD Hydroxymethylpyri 21.3 1.7E+02 0.0037 29.6 5.2 92 37-140 151-244 (263)
No 1
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=2.8e-117 Score=966.41 Aligned_cols=547 Identities=54% Similarity=0.974 Sum_probs=489.7
Q ss_pred CCCCCeeeC-CCCCceeeecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCC-CC
Q 008595 2 PPPPPVQCN-QTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQ-SQ 79 (560)
Q Consensus 2 ~~~~~~~c~-~~~~~~~~~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~-~g 79 (560)
||++||+|. +.++||+.|+|+||++++.+.|..|++|+|++||+++|+.|++++++|++++|+|||+++++++++. +|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~gg 80 (557)
T TIGR01677 1 PPDDPVRCVSGGANCTVSNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGA 80 (557)
T ss_pred CCCCCeecccCCCCceeecchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCE
Confidence 799999997 7789999999999999999999999999999999999999999999999996689999998877532 35
Q ss_pred ceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccce
Q 008595 80 STLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHV 159 (560)
Q Consensus 80 ~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V 159 (560)
++|||++||+|+++|.++++|||+||+++.+|.+.|.++|+++++.+++.++||||+|+||+||++..+++|.++|+|
T Consensus 81 --vvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V 158 (557)
T TIGR01677 81 --LLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYV 158 (557)
T ss_pred --EEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheE
Confidence 999999999999999999999999999999999999999999999999888999999999999998865789999999
Q ss_pred eEEEEEecCCcccccceEEEcCCC-h-hhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEEEecChhHHHHHHHHHHhhcC
Q 008595 160 IGLSLVVPAKESEGYAKIIRIEAN-D-PLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHE 237 (560)
Q Consensus 160 ~~~~vV~~~G~~~g~~~v~~~~~~-~-~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e 237 (560)
+++++|+++|+.+|++++++++++ + ++|+|++||+|+|||||++|||++|.+.+..++...+++++.+.+.++.+.++
T Consensus 159 ~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (557)
T TIGR01677 159 VGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSVTYTMRDDSDFEDQFVTFGKKHE 238 (557)
T ss_pred EEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccceEEEEcCCHHHHHHHHHHhhcCCe
Confidence 999999999977777779888874 3 57999999999999999999999999998888888888889888999999999
Q ss_pred eeeEEEecCCCcEEEEecCCcccCCCCCCCCcccccccchhhhhhhhHHHHHHHHHhcccccchhhhhhhhhhhhhhccc
Q 008595 238 FGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANG 317 (560)
Q Consensus 238 ~~~~~w~P~~~~~~~r~~dr~p~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~g 317 (560)
|.+++|+|++++++++..+|++...+++..+++++++.+.+......+..++.++...+..++|..+...+.......++
T Consensus 239 ~~~f~w~P~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (557)
T TIGR01677 239 FADITWYPSQGKAVYRRDDRVPVNASGNGVNDFLGFRSTLIAAIAGIRALEETFERSRNANGKCVTATITSAALFLPGYG 318 (557)
T ss_pred EEEEEEECCCCeEEEEecCcCCCCCCcchhhhhccccccchhhhhhhhhhhHHHhhhcccccceeccccccchhhhhccc
Confidence 99999999999999999999876555666667777765544444445666666666666677777655444433344345
Q ss_pred cc-cCCeeeccCcccccccceeeccccccccccCC--ccccCccccC-cceEEEEEEEecccHHHHHHHHHHHHHcCCCC
Q 008595 318 FK-NNALIFTGYPIVGRQGKLQTSGACLYSRRVDT--SCAWDPRING-LFFYETTAIFPANKFKDFIRDVKKLRDLKPEN 393 (560)
Q Consensus 318 ~~-~~~~~~~g~~vvg~~~~~~~s~~c~~~~~~~~--~~~w~~r~~~-~~f~~~e~~iP~~~~~~~i~~v~~l~~~~~~~ 393 (560)
+. +++..+++++++|++++||+++.|..++...+ .|+|+++.++ .+|+||||+||++++.++|++|+++++.++..
T Consensus 319 ~~~~~~~~~~~~~~~g~s~~v~~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~e~EyavP~e~~~~al~~vr~~~~~~~~~ 398 (557)
T TIGR01677 319 LTNSGGIIFTGYPVVGSQGRMQTSGSCLDSPQDGLLTACAWDPRYKGLFFFHQTTLSVPVSRFRDFVLDVKRLRDMEPKS 398 (557)
T ss_pred ccccccccccCCceecchHhhcccccccccccccccccCccccccccccceeEEEEEeeHHHHHHHHHHHHHHHHhcccc
Confidence 44 34455778899999999999999999866555 7999988777 88999999999999999999999999988877
Q ss_pred cCCccccCceEEeeccCCCCCCCCCCCeEEEEEEEeccCCCCCCcccHHHHHHHHHHHHhhcCCcccccCCCccchhHHH
Q 008595 394 FCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQ 473 (560)
Q Consensus 394 ~~~~~~~~~i~~Rfv~~s~a~Ls~~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~ 473 (560)
+|.+++++||++||+++|++||||+||+++|+|++|++.+++.|+.|+++|+++|+|++.+|||||||||+|++++++++
T Consensus 399 ~~~~~~~fpievR~v~aDd~wLSp~rds~~i~~~~~~~~~~~~~~~~~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~ 478 (557)
T TIGR01677 399 LCGVELYNGILIRYVKASPAYLGKEEDAVDFDFTYYRAKDPLTPRLYEDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVI 478 (557)
T ss_pred cCceeeecCeEEEEecCCccccCCCCceEEEEEEEecCCCCcccchHHHHHHHHHHHHHhhcCCCCCccccccchHHHHH
Confidence 78888999999999999999999999999999999999999999999999999999878999999999999999999999
Q ss_pred HhccCHHHHHHHHHhcCCCCCCCChhhhhhcCCC--CccCCCCCCCcceeecCCCCCCCCCCCccccCCcccccccccc
Q 008595 474 QKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGT--EAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLVYTEARVCR 550 (560)
Q Consensus 474 ~~YP~~~~F~~~r~~~DP~g~F~n~~~~~~lg~~--~~~~~~~c~~~~~c~c~~d~hc~~~~~~~c~~~~~~~~~~~c~ 550 (560)
++||+|++|+++|+++||+|+|+|+|++++||.. +.++.+|||+||+|+|++|+||||++|||||||+||+||||||
T Consensus 479 ~~YP~~~dF~alR~~~DP~g~F~N~yl~~l~~~~~~~~~~~~~c~~~~~c~c~~d~hc~~~~~~~c~~~~~~~e~~~c~ 557 (557)
T TIGR01677 479 RKYPNADKFLKVKDSYDPKGLFSSEWSDEILGIKGNASIKADGCALEGLCVCSEDAHCAPSKGYLCRPGKVYKEARVCT 557 (557)
T ss_pred HhCCCHHHHHHHHHhcCCCCccCCHHHHHHhCcCCCccccCCCccccceEecCCCCCCCCCCCccccCCcccCcccccC
Confidence 9999999999999999999999999999999976 5569999999999999999999999999999999999999997
No 2
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=100.00 E-value=1.4e-100 Score=777.82 Aligned_cols=491 Identities=45% Similarity=0.794 Sum_probs=463.8
Q ss_pred CCCCCCeeeC-CCCCceeeecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCC
Q 008595 1 MPPPPPVQCN-QTGGCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQ 79 (560)
Q Consensus 1 ~~~~~~~~c~-~~~~~~~~~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g 79 (560)
.||++|++|+ +.++|++.|.|..|+++..|+++.|-+|+|++||.++|+.|+++|+++|++ +.|||+++++|++ |
T Consensus 18 ~Pp~~p~r~~~~~~~~t~~~tY~afPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvV-g~gHSp~~l~ctd---g 93 (518)
T KOG4730|consen 18 IPPPPPFRCDSGNTFCTVANTYGAFPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVV-GSGHSPSKLVCTD---G 93 (518)
T ss_pred CCCCCCccccccceeeeeeecccccCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEe-cccCCCCcceecc---c
Confidence 4899999998 889999999999999999999999999999999999999999999999999 6999999999997 6
Q ss_pred ceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccce
Q 008595 80 STLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHV 159 (560)
Q Consensus 80 ~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V 159 (560)
.+|+|++||+++++|++.++||||||++|+||++++++.||+||+.|+|.++||||.|+||+|||+.+ ++|+|
T Consensus 94 --~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~-----vH~~v 166 (518)
T KOG4730|consen 94 --LLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLW-----VHDYV 166 (518)
T ss_pred --cEEEhhhhccceeeCchhceEEeccCcCHHHHHHHHHhcCccccCCCceecceeeeEEecccCCCccc-----cCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999985 78888
Q ss_pred eEEEEEecCCcccccceEEEcCCC--hhhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEEEecChhHHHHHHH-HHHhhc
Q 008595 160 IGLSLVVPAKESEGYAKIIRIEAN--DPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFM-DHAKKH 236 (560)
Q Consensus 160 ~~~~vV~~~G~~~g~~~v~~~~~~--~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 236 (560)
.++.+|.+--..+|+ ++.++++ .++|+|+++|+|.||||++|||+++|++++..++.+.++.++.++.. .++.+|
T Consensus 167 ~~i~~v~~~~~~~G~--v~~Ls~e~dpe~F~AAkvSLG~LGVIs~VTl~~vp~Fk~s~t~~v~n~~dl~~d~~~~~~~~~ 244 (518)
T KOG4730|consen 167 SEIISVSPITPADGF--VVVLSEEKDPELFNAAKVSLGVLGVISQVTLSVVPAFKRSLTYVVTNDSDLFKDWKVTLGESH 244 (518)
T ss_pred ceeEEEeeeccCCce--EEEecccCCHHHHhhhhhcccceeEEEEEEEEEEecceeeeEEEEechHHHHHHHHHHhcccc
Confidence 888877764334444 8888874 45699999999999999999999999999999999999999766666 999999
Q ss_pred CeeeEEEecCCCcEEEEecCCcccCCCCCCCCcccccccchhhhhhhhHHHHHHHHHhcccccchhhhhhhhhhhhhhcc
Q 008595 237 EFGDITWYPSRRTAVYRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIAN 316 (560)
Q Consensus 237 e~~~~~w~P~~~~~~~r~~dr~p~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 316 (560)
||++++|+|+++++|||.+||+++++ |++|+.+|+|++++.....|..++..+..++..++|..+..+...++...|
T Consensus 245 EF~~~~w~Py~~kvV~~~~nrv~~nt---g~~~f~p~~~~~s~~~~~~~s~~e~~~~~r~~~~kc~~a~~~tp~l~~~sf 321 (518)
T KOG4730|consen 245 EFVDVLWYPYTGKVVYRRDNRVPVNT---GLPDFKPFRPQPSAVLAKLRSFEESIELFRDANGKCVSADSVTPYLERFSF 321 (518)
T ss_pred cceEEEEeccCCeEEEEecCcccccc---CCccccCCCCcHHHHHHHHHHHHHHHHHhhhccCceecCcccchhHHHhhh
Confidence 99999999999999999999999986 899999999999999999999999999988889999887777888899999
Q ss_pred ccccCCeeeccCcccccccceeeccccccccccCCccccCccccCcceEEEEEEEecccHHHHHHHHHHHHHcCCCCcCC
Q 008595 317 GFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCG 396 (560)
Q Consensus 317 g~~~~~~~~~g~~vvg~~~~~~~s~~c~~~~~~~~~~~w~~r~~~~~f~~~e~~iP~~~~~~~i~~v~~l~~~~~~~~~~ 396 (560)
|..|++..|++||++|.+++|+.+|.|+++..++.+|+|++|+.|.||+|+.++||++++.+||.+++.+.+.+++.+|+
T Consensus 322 ~~~~~~~~~t~~pvig~q~~~~~s~sCl~s~~~g~~~~W~~ri~g~f~~qt~~s~pl~~~~~ai~dik~l~~ie~~~~c~ 401 (518)
T KOG4730|consen 322 GLTNGGKLFTGYPVIGVQGKMMSSGSCLDSQSDGTACEWDPRIKGFFFHQTTFSIPLTAVKDAINDIKDLVKIEPKSLCG 401 (518)
T ss_pred heecCcEeeecCcccCccchhccchhhhhhccCccccCCCccccCchhheeeeccchhhhhhHhhhhhhhcccChhhhhh
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred ccccCceEEeeccCCCCCCCCCCCeEEEEEEEeccC--CCCCCcccHH-HHHHHHHHHHhhcCCcccccCCCccchhHHH
Q 008595 397 VDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRAD--DASTPRLNQD-VWEEVEQMAFFKYGARPHWAKNRKLAFLNVQ 473 (560)
Q Consensus 397 ~~~~~~i~~Rfv~~s~a~Ls~~~d~~~i~i~~y~~~--~~~~p~~~~~-~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~ 473 (560)
.+.+.||+|||+++|++||+...+.+.|++.||++. ++-.|+.|++ ++++||||++.+|||.||||||++++|+++.
T Consensus 402 ~~~~~pi~iR~~t~sPayl~~t~~~~~fd~~Y~~a~dyrp~~~~l~e~~~~e~lEq~al~kyna~PHWaKn~~lafe~vi 481 (518)
T KOG4730|consen 402 LETYNPILIRYVTSSPAYLGKTSEDCDFDTTYYRAKDYRPLTPRLYEDFYFEELEQIALFKYNAKPHWAKNRNLAFEGVI 481 (518)
T ss_pred hhhccceeEEEecCCchhhccCcccceeeeeeeeccCCCcCCCCcchhHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHH
Confidence 999999999999999999999889999999999988 6789999999 8999999998899999999999999999999
Q ss_pred HhccCHHHHHHHHHhcCCCCCCCChhhhhhcCCC
Q 008595 474 QKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGT 507 (560)
Q Consensus 474 ~~YP~~~~F~~~r~~~DP~g~F~n~~~~~~lg~~ 507 (560)
++||++++|+++|+++||+|+|+|+|.|++||++
T Consensus 482 ~ky~n~~~flkvr~~lDP~~lFssew~d~il~~~ 515 (518)
T KOG4730|consen 482 RKYKNLDKFLKVRKELDPKGLFSSEWTDQILGVK 515 (518)
T ss_pred HhccChHHHHHHHHhcCccchhhhhhHHHHhccc
Confidence 9999999999999999999999999999999876
No 3
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=4.6e-84 Score=626.24 Aligned_cols=241 Identities=46% Similarity=0.910 Sum_probs=232.5
Q ss_pred hhccccccCCee--eccCcccccccceeeccccccccccCC--ccccCcccc-CcceEEEEEEEecccHHHHHHHHHHHH
Q 008595 313 LIANGFKNNALI--FTGYPIVGRQGKLQTSGACLYSRRVDT--SCAWDPRIN-GLFFYETTAIFPANKFKDFIRDVKKLR 387 (560)
Q Consensus 313 ~~~~g~~~~~~~--~~g~~vvg~~~~~~~s~~c~~~~~~~~--~~~w~~r~~-~~~f~~~e~~iP~~~~~~~i~~v~~l~ 387 (560)
..+||++|++.. ||||||||+|++||+||+|++++.+++ +|+||+|++ |.+|+|+||+||++++.++|++|++++
T Consensus 6 ~~~~g~~~~~~~~~f~g~pv~g~q~~~~~sg~c~~~~~~~~~~~c~wd~r~~~g~~F~E~EyaVP~e~~~~aL~elr~l~ 85 (257)
T PLN00107 6 AGHLAKQRRGVIPPFPGAAVIGSQDRIMSSGACLDGADDGLITACPWDPRIKHGEFFFQSAISVPLSGAAAFINDIKALR 85 (257)
T ss_pred hhhhCcccCCccccccCCceeccccccccccccccCccccccccCCCCccccCCcceEEEEEEecHHHHHHHHHHHHHHH
Confidence 457999999977 999999999999999999999999887 899999998 999999999999999999999999999
Q ss_pred HcCCCCcCCccccCceEEeeccCCCCCCCCCCCeEEEEEEEeccC-CCCCCcccHHHHHHHHHHHHhhcCCcccccCCCc
Q 008595 388 DLKPENFCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRAD-DASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRK 466 (560)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~Rfv~~s~a~Ls~~~d~~~i~i~~y~~~-~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~ 466 (560)
+.++..+|++++++|||+||+++|++|||++||+++|+|++|++. ++.+|+.|+++|++||||++.||||||||||+|+
T Consensus 86 ~~~~~~l~~~ev~fPIevR~vaADdawLSp~rDSv~I~~~~yr~~~~~~~pr~~~~~f~eiEqial~kygGRPHWGK~h~ 165 (257)
T PLN00107 86 DIEPDALCGLELNYGVLLRYVRASPAHLGKEEDALDFDLTYYRSKDDPAAPRLHEDAMEEIEQMAILKYGALPHWGKNRN 165 (257)
T ss_pred HhCcccccccccccCeEEEEecCcchhhCCCCCeEEEEEEEecccCCccccccHHHHHHHHHHHHHHhcCCcCCchhccC
Confidence 999988999999999999999999999999999999999999998 7788999999999999998899999999999999
Q ss_pred cchhHHHHhccCHHHHHHHHHhcCCCCCCCChhhhhhcCCC----CccCCCCCCCcceeecCCCCCCCCCCCccccCCcc
Q 008595 467 LAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFGT----EAAKFDGCALEGQCICSEDRHCSPSKGYFCKPGLV 542 (560)
Q Consensus 467 ~~~~~~~~~YP~~~~F~~~r~~~DP~g~F~n~~~~~~lg~~----~~~~~~~c~~~~~c~c~~d~hc~~~~~~~c~~~~~ 542 (560)
+++++++++||+|++|+++|+++||+|+|+|+|++++||+. ++++++|||+||+|+||+|+||||+||||||||+|
T Consensus 166 l~~~~l~~lYPr~~dFlavR~~lDP~G~F~N~yl~rllg~~~~~~~~~~~~gCa~eg~C~C~~d~HC~p~~g~~Crpg~~ 245 (257)
T PLN00107 166 AAFDGAIAKYKKAGEFLKVKERLDPEGLFSSEWSDKILGLAGAGGVSIVKDGCALEGLCICSDDAHCAPEKGYLCRPGKV 245 (257)
T ss_pred CCHHHHHHHCcCHHHHHHHHHHhCCCCccCCHHHHHHhCccCCCCccccCCCccccceEecCCCCCCCCCCCcccCCCcc
Confidence 99999999999999999999999999999999999999883 88999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 008595 543 YTEARVCRFSQ 553 (560)
Q Consensus 543 ~~~~~~c~~~~ 553 (560)
|+||||||+++
T Consensus 246 ~~~arvc~~~~ 256 (257)
T PLN00107 246 YKEARVCRLVA 256 (257)
T ss_pred cccceeeeccC
Confidence 99999999875
No 4
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=2.2e-76 Score=633.00 Aligned_cols=426 Identities=25% Similarity=0.351 Sum_probs=350.8
Q ss_pred cCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCC
Q 008595 20 AYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVAN 99 (560)
Q Consensus 20 ~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~ 99 (560)
.|+||++++.+.|..++.|+|++||+++|+.|++++.+|+++ |+|||++++++++ | ++|||++||+|+++|+++
T Consensus 3 ~w~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~-G~GhS~s~~~~~~---g--vvIdl~~l~~i~~id~~~ 76 (438)
T TIGR01678 3 QFQNWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVV-GGGHSPSDIACTD---G--FLIHLDKMNKVLQFDKEK 76 (438)
T ss_pred eEEeCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEE-CCCCCCCCCccCC---e--EEEEhhhcCCceEEcCCC
Confidence 478999999999999999999999999999999999999999 9999999988764 7 999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEE
Q 008595 100 LTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIR 179 (560)
Q Consensus 100 ~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~ 179 (560)
++|||+||+++.+|.+.|.++|+++|+.++++.+||||+|++|+||++. ++|.++|+|+++++|+++|+ +++
T Consensus 77 ~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG~~~--~~G~~~d~V~~l~vV~~~G~------i~~ 148 (438)
T TIGR01678 77 KQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHGSSI--KHGILATQVVALTIMTADGE------VLE 148 (438)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCCCcc--ccCcHHhhEEEEEEEcCCCc------EEE
Confidence 9999999999999999999999999999999999999999999999875 68999999999999999999 999
Q ss_pred cCCC--hhhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEEEecChhHHHHHHHHHHhhcCeeeEEEecCCCcEEEEecCC
Q 008595 180 IEAN--DPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDR 257 (560)
Q Consensus 180 ~~~~--~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~P~~~~~~~r~~dr 257 (560)
++++ .++|+|+++|+|+|||||++||+++|.+.+.......+.+++.+.+.++.++++|++++|||++++++++..++
T Consensus 149 ~s~~~~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~ 228 (438)
T TIGR01678 149 CSEERNADVFQAARVSLGCLGIIVTVTIQVVPQFHLQETSFVSTLKELLDNWDSHWKSSEFFRVLWFPYTENVVIWRQNK 228 (438)
T ss_pred eCCCCChhHHHHHhcCCCceEeeEEEEEEEEeccceEEEEecCCHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEECcc
Confidence 9874 34699999999999999999999999999888877889999999999999999999999999999999888777
Q ss_pred cccCCCCCCCCcccccccchhhhhhhhHHHHHHHHHhcccccchhh--hhhhhhhhhhhccccccCCeeeccCccccccc
Q 008595 258 VTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTL--AATVLGFKKLIANGFKNNALIFTGYPIVGRQG 335 (560)
Q Consensus 258 ~p~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~--~~~~~~~~~~~~~g~~~~~~~~~g~~vvg~~~ 335 (560)
++.. +....+.+.+ ......+.+.+.... .+.. .++.....+...++.. ..+..+++|+++
T Consensus 229 ~~~~-~~~~~~~~~~--------~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~ 291 (438)
T TIGR01678 229 TNKA-PSSPSNSFWD--------YKLGFFLYEFLLWTS----KYLPCLTPWIERFFFWMLYGEK----SSTKKESSNLSH 291 (438)
T ss_pred CCCC-cccccchhhh--------hhHHHHHHHHHHHHH----hhcccccHHHHHHHHHhhcCCc----cCCCcceecchH
Confidence 6531 2111111100 111111222221111 1110 1122122222222211 112335678888
Q ss_pred ceeeccccccccccCCccccCccccCcceEEEEEEEecccHHHHHHHHHHHHHcCCCCcCCccccCceEEeeccC---CC
Q 008595 336 KLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKA---SS 412 (560)
Q Consensus 336 ~~~~s~~c~~~~~~~~~~~w~~r~~~~~f~~~e~~iP~~~~~~~i~~v~~l~~~~~~~~~~~~~~~~i~~Rfv~~---s~ 412 (560)
+++. . .|.| .++++||+||++++.++|++|+++++..+... +.++++|||+||+++ |+
T Consensus 292 ~~~~-~----------~~~f-------~~~~~Ey~vP~~~~~~al~~l~~~~~~~~~~~-~~~v~fpiEvR~~~~~~~Dd 352 (438)
T TIGR01678 292 KIFT-M----------ECRF-------SQHVQEWGIPREKTKEALLELKAMLEAHAKNK-EVYAHYPVEVRFTRGTLPDE 352 (438)
T ss_pred Hhhc-c----------ccee-------ehhceeecccHHHHHHHHHHHHHHHHhccccc-CceEeeeEEEEEeCCCCCCc
Confidence 7764 1 2332 23568999999999999999999999765422 457899999999999 99
Q ss_pred CCCCC--CCCeEEEEEEEeccCCCCCCcccHHHHHHHHHHHHhhcCCcccccCCCc-cchhHHHHhccCHHHHHHHHHhc
Q 008595 413 AYLGQ--SEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRK-LAFLNVQQKYANFSRFLAAKNQM 489 (560)
Q Consensus 413 a~Ls~--~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~-~~~~~~~~~YP~~~~F~~~r~~~ 489 (560)
+|||| +||+|+|+|++|++++.+.| |+++|+++|++ +.+|||||||||+|. ++.++++++||+|++|+++|+++
T Consensus 353 ~wLSp~~~rds~~i~~~~y~~~~~~~~--~~~~f~~~E~i-~~~~gGRPHWgK~h~~~~~~~l~~~YP~~~~F~~vr~~~ 429 (438)
T TIGR01678 353 CLLSPCFQVDTCYINAIMYRPFGKDVP--RLDYFLAYETI-MKKFGGKPHWAKAHNVCKQKDFEEMYPTLHKFCDIRKKL 429 (438)
T ss_pred eecCCCCCCceEEEEEEEccCCCCCCC--HHHHHHHHHHH-HHHcCCCCCchhcccccCHHHHHHHCcCHHHHHHHHHhh
Confidence 99998 48999999999999865555 89999999999 799999999999999 88899999999999999999999
Q ss_pred CCCCCCCCh
Q 008595 490 DPQNMFSSE 498 (560)
Q Consensus 490 DP~g~F~n~ 498 (560)
||+|+|+|+
T Consensus 430 DP~g~F~N~ 438 (438)
T TIGR01678 430 DPTGVFLNS 438 (438)
T ss_pred CcccccCCC
Confidence 999999996
No 5
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.2e-74 Score=623.15 Aligned_cols=439 Identities=18% Similarity=0.240 Sum_probs=341.4
Q ss_pred eecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeC
Q 008595 18 KNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDV 97 (560)
Q Consensus 18 ~~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~ 97 (560)
...|+||++++.+.|..+++|+|++||+++|+.|+++|.+|+++ |+|||++++++++ | .+|||++||+|+++|+
T Consensus 48 ~~~w~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~-GsGhS~sg~a~t~---g--~lldL~~ln~Vl~vD~ 121 (541)
T TIGR01676 48 LHTVSNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPV-GSGLSPNGIGLSR---A--GMVNLALMDKVLEVDE 121 (541)
T ss_pred cccccccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEE-CCCcCCCCcccCC---C--eEEEhhhCCCCEEEcC
Confidence 36689999999999999999999999999999999999999999 9999999988764 5 7899999999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceE
Q 008595 98 ANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKI 177 (560)
Q Consensus 98 ~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v 177 (560)
++++|||+||+++.+|.+.|.++|+++++.+++..+||||+|+||+||++. ++|.++|+|+++++|+++|+ +
T Consensus 122 ~~~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGtg~--~~G~l~d~V~~l~lVta~G~------v 193 (541)
T TIGR01676 122 EKKRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGTGA--KLPPIDEQVIAMKLVTPAKG------T 193 (541)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcCCCC--CCCCHHHhEEEEEEEECCCC------E
Confidence 999999999999999999999999999999999999999999999999987 58999999999999999998 8
Q ss_pred EEcCCC--hhhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEEEecChhHHHHHHHHHHhhcCeeeEEEecCCCcEEEEec
Q 008595 178 IRIEAN--DPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYD 255 (560)
Q Consensus 178 ~~~~~~--~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~P~~~~~~~r~~ 255 (560)
++++++ .++|+|+++|+|+|||||+|||+++|.+.+.......+.+++++.+.+++++++|++++|||++++++.+..
T Consensus 194 v~~s~~~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~~~~~e~l~~~~~~~~~~~h~~f~wfP~t~~~~~~~~ 273 (541)
T TIGR01676 194 IEISKDKDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFISNMKDIKKNHKKFLADNKHVKYLHIPYTDAIVVVTC 273 (541)
T ss_pred EEECCCCCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEecCHHHHHHHHHHHHhcCCcEEEEEEcCCCceeEEEc
Confidence 888874 356999999999999999999999999998766667999999999999999999999999999999999888
Q ss_pred CCcccCC-CCCCCCcccccccchhhhhhhhHHHHHHHHH----------------hcccccchhhhhh----hhh---hh
Q 008595 256 DRVTLNT-RGDGVNDFIGFQDTSILISKSTRAAEKALET----------------AKNANGKCTLAAT----VLG---FK 311 (560)
Q Consensus 256 dr~p~~~-p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----------------~~~~~~~c~~~~~----~~~---~~ 311 (560)
|+++... |...... |.... ..........|.+.. +..+...+....+ .+. .+
T Consensus 274 ~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~i 349 (541)
T TIGR01676 274 NPISKSRGPPKFKPK---YTSEE-AIQHVRDLYRESLKKYRGQVADSASEEPDIDEFSFTELRDKLLALDPLNKEHVIEI 349 (541)
T ss_pred CCCCcccCCCCcccc---ccchh-hhhhhhhhhhhhhhhhhcccccccccccchhhhHHHHHHHHHhhCCcccchhHHHH
Confidence 8765211 1110000 00000 000000000000000 0000000000000 001 01
Q ss_pred hhhc--cccccCCeeeccCcccccccceeeccccccccccCCccccCccccCcceEEEEEEEecc-------cHHHHHHH
Q 008595 312 KLIA--NGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPAN-------KFKDFIRD 382 (560)
Q Consensus 312 ~~~~--~g~~~~~~~~~g~~vvg~~~~~~~s~~c~~~~~~~~~~~w~~r~~~~~f~~~e~~iP~~-------~~~~~i~~ 382 (560)
.... +.... .+ ..++++++++.. . | +..+.++||+||.+ +..++|++
T Consensus 350 n~~~~~~~~~s-----~~-~~v~~S~~vf~~-~----------~-------~f~q~~~EyaiP~e~~~~~~~~~~~~l~e 405 (541)
T TIGR01676 350 NKAEAEFWRKS-----EG-YKVGWSDEILGF-D----------C-------GGHQWVSETCFPAGTLAKPNMKDIEYIEE 405 (541)
T ss_pred HHHHHHHhhcC-----Cc-eEeCcHHHhcCc-c----------c-------ccceEEEEEEEecccccccccchHHHHHH
Confidence 1100 11110 11 246777877741 1 1 13345679999999 66999999
Q ss_pred HHHHHHcCCCCcCCccccCceEEeeccCCCCCCCC--CCC----eEEEEEEEeccCCCC--CCcccHHHH---HHHHHHH
Q 008595 383 VKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQ--SED----SIVVDYNYYRADDAS--TPRLNQDVW---EEVEQMA 451 (560)
Q Consensus 383 v~~l~~~~~~~~~~~~~~~~i~~Rfv~~s~a~Ls~--~~d----~~~i~i~~y~~~~~~--~p~~~~~~~---~eie~~~ 451 (560)
|+++++++. +++++|||+||+++|++|||| ++| +++|.|++|++..+. .....++|| ..+|+++
T Consensus 406 l~~~i~~~~-----~~~~fPiEvR~ta~Dd~~LSpa~~r~~~~~s~~I~v~~y~~~~~~~~~~~~~~~~f~~~~~~e~i~ 480 (541)
T TIGR01676 406 LKQLIEKEN-----IPAPAPIEQRWTACSKSPMSPASSSADDDIFSWVGIIMYLPTMDARQRKEITEEFFHYRHLTQALL 480 (541)
T ss_pred HHHHHHhcC-----CCCCCCeEEEeecCCCcccCCccCCCCCCceEEEEEEecCCCCChhhhhhhHHHHHhhhHHHHHHH
Confidence 999999753 468999999999999999998 478 799999999975310 001114788 7778785
Q ss_pred HhhcCCcccccCCCcc-chhH-------HHHhccCHHHHHHHHHhcCCCCCCCChhhhhhc
Q 008595 452 FFKYGARPHWAKNRKL-AFLN-------VQQKYANFSRFLAAKNQMDPQNMFSSEWSDEIL 504 (560)
Q Consensus 452 ~~k~gGrPHWgK~~~~-~~~~-------~~~~YP~~~~F~~~r~~~DP~g~F~n~~~~~~l 504 (560)
+.+|||||||||.|.+ +.++ ++++|| |++|+++|+++||+|+|+|+|++++|
T Consensus 481 ~~~ygGRPHWgK~h~~~~~~~l~~~yprl~~~YP-~d~F~~~R~~lDP~g~F~N~yL~~lf 540 (541)
T TIGR01676 481 WDHFSAFEHWAKIEVPKDKDELAALQARLKKKFP-VDASNKARKALDPNKILSNNKLEKLF 540 (541)
T ss_pred HHhcCCccCcceecCCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHhCCCCccccHHHHHhh
Confidence 6666999999999999 9999 777777 79999999999999999999999987
No 6
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=3.8e-74 Score=615.03 Aligned_cols=415 Identities=21% Similarity=0.312 Sum_probs=341.9
Q ss_pred CCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCc
Q 008595 21 YGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANL 100 (560)
Q Consensus 21 ~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~ 100 (560)
|+||++...+.|..+++|+|++||+++|+.|++ +|+++ |+|||++++++++ | ++|||++||+|+++|++++
T Consensus 1 w~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~-G~Ghs~~~~~~~~---g--~~idl~~l~~i~~~d~~~~ 71 (419)
T TIGR01679 1 WSNWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAV-GSGHSFTDLACTD---G--TMISLTGLQGVVDVDQPTG 71 (419)
T ss_pred CcCCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEE-eCCCCCCCcccCC---C--EEEEhhHcCCceeecCCCC
Confidence 789999999999999999999999999999863 69998 8999999887654 7 9999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEEc
Q 008595 101 TVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI 180 (560)
Q Consensus 101 ~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~~ 180 (560)
+||||||+++.+|.+.|.++|+++|+.+++..+||||+|++++||++. ++|+++|+|+++++|+++|+ ++++
T Consensus 72 ~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~g~--~~G~~~d~V~~l~vV~a~G~------v~~~ 143 (419)
T TIGR01679 72 LATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHGTGV--RFQALHARIVSLRLVTAGGK------VLDL 143 (419)
T ss_pred EEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCCCCc--cCCchhhhEEEEEEEcCCCC------EEEE
Confidence 999999999999999999999999999999889999999999999986 58999999999999999999 9999
Q ss_pred CCC--hhhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEEEecChhHHHHHHHHHHhhcCeeeEEEecCCCcEEEEecCCc
Q 008595 181 EAN--DPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRV 258 (560)
Q Consensus 181 ~~~--~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~P~~~~~~~r~~dr~ 258 (560)
+++ .++|+|++||+|+|||||++|||++|.++........+.+++.+.+.++.+.+++++++|+|++++++++..+++
T Consensus 144 ~~~~~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 223 (419)
T TIGR01679 144 SEGDDQDMYLAARVSLGALGVISQVTLQTVALFRLRRRDWRRPLAQTLERLDEFVDGHRHFEFYVFPFAGKALTITMDRS 223 (419)
T ss_pred cCCCCHHHHHHHHhCCCceEEEEEEEEEeecceEeEEEEEecCHHHHHHHHHHHHhcCCeEEEEEecCCCeEEEEECCcC
Confidence 874 356999999999999999999999999998888888899999999999999999999999999999999988876
Q ss_pred ccCCCCCCCCcccccccchhhhhhhhHHHHHHHHHhcccccchhhhhhhhhhhhhhccccccCCeeeccCccccccccee
Q 008595 259 TLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQ 338 (560)
Q Consensus 259 p~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~g~~~~~~~~~g~~vvg~~~~~~ 338 (560)
+... ..... +.|.. ....++ .+ |...+.........+.... ..+.....++..++++
T Consensus 224 ~~~~--~~~~~---~~~~~-----~~~~~~-~l---------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~ 280 (419)
T TIGR01679 224 DEQP--KPRQR---DVDEN-----FLGGLR-LL---------RQTLRRFPSLRPRLNRLMT---NMMSSETVVDRAYKVF 280 (419)
T ss_pred CCcc--ccccc---chhhh-----HHHHHH-HH---------HHhcccCchhHHHHHHHHH---hhcCCceeeccceEEe
Confidence 5321 11000 00100 001110 00 1100111111000000000 0011112345555655
Q ss_pred eccccccccccCCccccCccccCcceEEEEEEEecccHHHHHHHHHHHHHcCCCCcCCccccCceEEeeccCCCCCCCC-
Q 008595 339 TSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQ- 417 (560)
Q Consensus 339 ~s~~c~~~~~~~~~~~w~~r~~~~~f~~~e~~iP~~~~~~~i~~v~~l~~~~~~~~~~~~~~~~i~~Rfv~~s~a~Ls~- 417 (560)
.+ .++..|+|+||+||++++.++|++|+++++.+. .+.++||++||+++|++||||
T Consensus 281 ~~------------------~~~~~f~q~e~~iP~~~~~~al~~i~~~i~~~~-----~~~~~pve~R~~~ad~~~LS~~ 337 (419)
T TIGR01679 281 AT------------------QRKVRFNEMEYHLPRENGRKALQEVIDLVERRS-----PPVMFPIEVRFSAPDDSWLSPF 337 (419)
T ss_pred cc------------------cccceeeEEEEecchhHHHHHHHHHHHHHHhcC-----CCccceEEEEEecCCCcccCCC
Confidence 32 123679999999999999999999999998653 357899999999999999995
Q ss_pred -CCCeEEEEEEEeccCCCCCCcccHHHHHHHHHHHHhhcCCcccccCCCccchhHHHHhccCHHHHHHHHHhcCCCCCCC
Q 008595 418 -SEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFS 496 (560)
Q Consensus 418 -~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~YP~~~~F~~~r~~~DP~g~F~ 496 (560)
++|+++|.++.|... .++++++++|+| +.+|||||||||+|.+++++++++||+|++|+++|+++||+|+|+
T Consensus 338 ~~r~~~~ia~~~~~~~------~~~~~~~~~e~i-~~~~gGRpHwgK~~~l~~~~l~~~YP~~~~F~~~r~~~DP~g~F~ 410 (419)
T TIGR01679 338 YGRPTCSIAVHQYAGM------DFESYFRAVEPI-FRRYAGRPHWGKRHYLTAATLRERYPRWDDFAAVRDDLDPDRRFL 410 (419)
T ss_pred CCCCcEEEEEEEcCCC------CHHHHHHHHHHH-HHHcCCCCCchhccCCCHHHHHHHCcCHHHHHHHHHHhCCCCccC
Confidence 699999999998753 289999999999 899999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcC
Q 008595 497 SEWSDEILF 505 (560)
Q Consensus 497 n~~~~~~lg 505 (560)
|+|++++||
T Consensus 411 n~~~~rl~~ 419 (419)
T TIGR01679 411 NPYTRGLFG 419 (419)
T ss_pred CHHHHHhhC
Confidence 999999986
No 7
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=2.6e-72 Score=609.53 Aligned_cols=441 Identities=18% Similarity=0.260 Sum_probs=346.0
Q ss_pred eecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeC
Q 008595 18 KNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDV 97 (560)
Q Consensus 18 ~~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~ 97 (560)
...|+||++...+.|..++.|+|++||+++|+.|+++|.+|+++ |+|||++++++++ + .+|||++||+|+++|+
T Consensus 83 ~~~~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~Vrvv-GsGhS~~~l~~td---~--glIdL~~l~~Il~vD~ 156 (573)
T PLN02465 83 LHTVSNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPV-GSGLSPNGLAFSR---E--GMVNLALMDKVLEVDK 156 (573)
T ss_pred chhccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEE-cCCcCCCCeeeCC---C--EEEECcCCCCcEEEeC
Confidence 34689999999999999999999999999999999999999999 8999999988765 5 6899999999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceE
Q 008595 98 ANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKI 177 (560)
Q Consensus 98 ~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v 177 (560)
++++|||+||+++.+|.+.|.++||+|++++++..+||||+|++|+||++. .+|.++|+|+++++|+++|+ +
T Consensus 157 e~~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGtG~--~~g~i~d~V~~l~lVta~G~------v 228 (573)
T PLN02465 157 EKKRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGTGA--RIPPIDEQVVSMKLVTPAKG------T 228 (573)
T ss_pred CCCEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCCCCCcCC--CcCcHhheEEEEEEEECCCC------E
Confidence 999999999999999999999999999999999889999999999999987 47899999999999999998 8
Q ss_pred EEcCCC-h-hhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEEEecChhHHHHHHHHHHhhcCeeeEEEecCCCcEEEEec
Q 008595 178 IRIEAN-D-PLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYD 255 (560)
Q Consensus 178 ~~~~~~-~-~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~P~~~~~~~r~~ 255 (560)
++++++ + ++|+++++|+|.|||||+|||+++|.+++.......+.+++.+.+.+++++++|++++|||++++++++..
T Consensus 229 v~~s~~~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~~~~~~~~~~~~~~~~~~~~~h~~f~wfP~td~~~v~~~ 308 (573)
T PLN02465 229 IELSKEDDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTFVSNRKEIKKNHKKWLSENKHIRYMWIPYTDTVVVVTC 308 (573)
T ss_pred EEECCCCCHHHHhHhhccCCCCcEEEEEEEEEEecCceEEEEEEecHHHHHHHHHHHHHhCcccceeecCCcceEEEEeC
Confidence 888874 3 47999999999999999999999999997766677889999999999999999999999999999999888
Q ss_pred CCcccCCCCCCCCcccccccchhhhhhhhHHHHHHHH--------------Hhcccccc-hhhhhhhhh---hhhhh--c
Q 008595 256 DRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALE--------------TAKNANGK-CTLAATVLG---FKKLI--A 315 (560)
Q Consensus 256 dr~p~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--------------~~~~~~~~-c~~~~~~~~---~~~~~--~ 315 (560)
++++...+...... .|... .......+...|.+. .+...... +...+..++ .+... .
T Consensus 309 ~~~~~~~~~~~~~~--~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~p~~~~~vn~~~~~ 385 (573)
T PLN02465 309 NPLSKWKEPPKIKP--KYSED-ERVQPLRDLYKESAGTKSSENPEPDIQEMGFGELRDKLLALDPLDPDHVKRVNAAEAE 385 (573)
T ss_pred CCCCCccCCccccc--ccchh-hhhhhhhhhhhhhccccccccccccccccchHHHHHHHhhcCccchhhhHHHHHHHHH
Confidence 87642111110000 01000 000000001111100 00000000 000000000 01111 0
Q ss_pred cccccCCeeeccCcccccccceeeccccccccccCCccccCccccCcceEEEEEEEecc-------cHHHHHHHHHHHHH
Q 008595 316 NGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPAN-------KFKDFIRDVKKLRD 388 (560)
Q Consensus 316 ~g~~~~~~~~~g~~vvg~~~~~~~s~~c~~~~~~~~~~~w~~r~~~~~f~~~e~~iP~~-------~~~~~i~~v~~l~~ 388 (560)
+... ..+ ..+|++++++.. . | +..+.++||+||.+ +..++|++|+++++
T Consensus 386 ~~~~-----s~~-~~v~~S~~if~~-~----------~-------~~~q~~~EyaiP~~~~~~~~~~~~~~l~el~~~i~ 441 (573)
T PLN02465 386 FWRR-----SEG-YRVGWSDEILGF-D----------C-------GGQQWVSEVCFPAGTLAKPSMKDLEFMEELLALIE 441 (573)
T ss_pred Hhhc-----CCC-cEeCcHHHhcCc-c----------c-------cceeEEEEEEEeccccccccccHHHHHHHHHHHHH
Confidence 0000 111 246788887741 1 1 13345679999999 66799999999999
Q ss_pred cCCCCcCCccccCceEEeeccCCCCCCCC--C----CCeEEEEEEEeccCCC-----CCCcccHHHH-HHHHHHHHhhcC
Q 008595 389 LKPENFCGVDSYNGFLIRFIKASSAYLGQ--S----EDSIVVDYNYYRADDA-----STPRLNQDVW-EEVEQMAFFKYG 456 (560)
Q Consensus 389 ~~~~~~~~~~~~~~i~~Rfv~~s~a~Ls~--~----~d~~~i~i~~y~~~~~-----~~p~~~~~~~-~eie~~~~~k~g 456 (560)
++. +++++|||+||+++|++|||| + ++++||.|++|++.+. ..-+.+.++| .++|+| +.+||
T Consensus 442 ~~~-----~~~~fPiE~R~ta~dd~~LSpa~~~~~d~~s~~I~i~~Y~~~~~~~~~~~~~~~~~~yf~~~~e~i-~~~yg 515 (573)
T PLN02465 442 KEG-----IPAPAPIEQRWTASSSSPMSPASSPSPDDLHSWVGIIMYLPTEDERQRKEITEEFFHYRKKTQRNL-WDKYS 515 (573)
T ss_pred hcC-----CCCCCceEEEeecCCccccCcccCCCCCCceEEEEEEeccCCChhhhhhhhhHHHHHHHHHHHHHH-HHHcC
Confidence 653 468999999999999999998 4 4499999999998641 0112345899 999999 89999
Q ss_pred CcccccCCCc--------cchhHHHHhccCHHHHHHHHHhcCCCCCCCChhhhhhcCC
Q 008595 457 ARPHWAKNRK--------LAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEILFG 506 (560)
Q Consensus 457 GrPHWgK~~~--------~~~~~~~~~YP~~~~F~~~r~~~DP~g~F~n~~~~~~lg~ 506 (560)
|||||||.|. ++.++++++|| |++|+++|+++||+|+|+|+|++++||.
T Consensus 516 gRPHWgK~h~~~~~~~~~~~~~~L~~~YP-~d~F~~~R~~lDP~g~f~N~~L~~lf~~ 572 (573)
T PLN02465 516 AYEHWAKIEVPKDKEELEALRERLRKRFP-VDAFNKARKELDPKGILSNNLLEKLFPK 572 (573)
T ss_pred CCcccceeccccccchhhcCHHHHHhhCC-HHHHHHHHHHhCCCCccCCHHHHHhhCC
Confidence 9999999999 99999999999 9999999999999999999999999985
No 8
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.1e-39 Score=352.47 Aligned_cols=420 Identities=17% Similarity=0.204 Sum_probs=288.5
Q ss_pred CCCCCCCCCCCccEEEeCCCHHHHHHHHHHHH--hCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCC------C
Q 008595 21 YGAWGDRKDCHVSNVTYPTTEEELRLAVAHAN--KNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDS------N 92 (560)
Q Consensus 21 ~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~--~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~------i 92 (560)
-+||++...+.|.+|++|+|++||+++|+.|+ +++.+|+++ |+|||+++.+.+. +| ++|||++||+ +
T Consensus 54 s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~r-GgGHS~~G~a~~~--~G--ivIdms~Ln~i~~~~~i 128 (525)
T PLN02441 54 SKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAAR-GHGHSLNGQAQAP--GG--VVVDMRSLRGGVRGPPV 128 (525)
T ss_pred hcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEE-CCCcCCCCCccCC--Ce--EEEECCCCCCcCccCce
Confidence 47899999999999999999999999999997 568888888 9999999887653 46 9999999999 6
Q ss_pred eeeeCCCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCccc
Q 008595 93 IDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESE 172 (560)
Q Consensus 93 ~~id~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~ 172 (560)
+++|.+..+|+|+||++|.++.+++.++|++++..+++..+||||+++++++|.... ++|..+|+|++++||+++|+
T Consensus 129 i~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~-ryG~~~d~Vl~leVVtadGe-- 205 (525)
T PLN02441 129 IVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAF-RHGPQISNVLELDVVTGKGE-- 205 (525)
T ss_pred EEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCcccccc-ccCcHHHhEEEEEEEeCCce--
Confidence 789999999999999999999999999999988888888899999999955443443 79999999999999999999
Q ss_pred ccceEEEcCCC--hhhHHHHHhCCCCeEEEEEEEEEeeeCCcee--EEEEecChhHHHHHHHHHHh-----hcCeeeEEE
Q 008595 173 GYAKIIRIEAN--DPLLDAAKVSLGLLGVISEVKLSLEPGFKRS--ITFNFTDDAHIEDIFMDHAK-----KHEFGDITW 243 (560)
Q Consensus 173 g~~~v~~~~~~--~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~e~~~~~w 243 (560)
+++++++ .++|+|++||+|+|||||++||+++|.++.. +.....+.+++.+.+.++++ .+||++.+|
T Consensus 206 ----vv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~~~~~~~d~veg~~ 281 (525)
T PLN02441 206 ----VVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLISRPPENSFDYVEGFV 281 (525)
T ss_pred ----EEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHhcCCCCCcceEeEEE
Confidence 9999874 4579999999999999999999999999843 34456778888888888887 789999999
Q ss_pred ecC-CCcEEEEec------CCcccCCCCC-C--CC--c-ccccccchhhhhhhhHHHHHHHHHhcccccchhhhhhhhhh
Q 008595 244 YPS-RRTAVYRYD------DRVTLNTRGD-G--VN--D-FIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGF 310 (560)
Q Consensus 244 ~P~-~~~~~~r~~------dr~p~~~p~~-~--~~--~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~~~~~~~~ 310 (560)
+|. ++.+..+.. +......... + ++ . ...|.+... -.++ ....+.
T Consensus 282 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~------~~~~----------------~~~~~l 339 (525)
T PLN02441 282 IVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTS------DTVD----------------QEVESL 339 (525)
T ss_pred EeCCCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCc------cchh----------------hHHHHH
Confidence 999 565554422 1111111100 0 00 0 001111000 0000 000111
Q ss_pred hhhhccccccCCeee-ccCcccccccceeeccccccccccCC--ccccCccccCcceEEEEEEEecccHHHHHHHHHHHH
Q 008595 311 KKLIANGFKNNALIF-TGYPIVGRQGKLQTSGACLYSRRVDT--SCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLR 387 (560)
Q Consensus 311 ~~~~~~g~~~~~~~~-~g~~vvg~~~~~~~s~~c~~~~~~~~--~~~w~~r~~~~~f~~~e~~iP~~~~~~~i~~v~~l~ 387 (560)
+..+.| ..+..| ++.+.+.+-+|+... +..+ ...|+..+.- ...+||-+++.+|.+.|.+-+
T Consensus 340 l~~L~~---~~~~~~~~d~~y~~fl~rv~~~-------e~~lr~~G~W~~phPW-----lnlfvp~s~i~~f~~~v~~~i 404 (525)
T PLN02441 340 LKRLSF---IPGLLFTTDVSYVDFLDRVHVE-------ELKLRSKGLWEVPHPW-----LNLFVPKSRIADFDDGVFKGI 404 (525)
T ss_pred HhhcCC---CCCCceecccCHHHHHHhhhhH-------HHHHhhcCCcCCCCch-----hheeCcHHHHHHHHHHHHhhc
Confidence 111111 011111 223334444444321 2222 4677644332 356899999999999886655
Q ss_pred HcCCCCcCCccccCceEEeeccCC--CCCCC---CCCCeEEEEEEEeccCCCCCCcccHHHHHHHHHHH--HhhcCC---
Q 008595 388 DLKPENFCGVDSYNGFLIRFIKAS--SAYLG---QSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMA--FFKYGA--- 457 (560)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~Rfv~~s--~a~Ls---~~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~--~~k~gG--- 457 (560)
-.+. ...||++-=+..+ +.-+| |.++.++ -+-..++..++. ...+...++-++++ ..+.|+
T Consensus 405 ~~~~-------~~G~~liyP~~~~~~~~~~s~~~P~~~~~y-~v~~l~~~~p~~-~~~~~~~~~n~~i~~~~~~~g~~~k 475 (525)
T PLN02441 405 LLDG-------TNGPILVYPLNRSKWDNRTSAVIPDEDIFY-LVALLRSALPSG-DDLEHLLAQNKEILRFCEKAGIGVK 475 (525)
T ss_pred cccc-------CCCeEEEEecccccCCCCCccccCCCCeEE-EEEEcCCCCCCc-ccHHHHHHHHHHHHHHHHHcCCceE
Confidence 3221 1246666544333 23444 3455544 355555543321 23455555555552 234566
Q ss_pred --cccccCCCccchhHHHHhc-cCHHHHHHHHHhcCCCCCCCChhhhhhcC
Q 008595 458 --RPHWAKNRKLAFLNVQQKY-ANFSRFLAAKNQMDPQNMFSSEWSDEILF 505 (560)
Q Consensus 458 --rPHWgK~~~~~~~~~~~~Y-P~~~~F~~~r~~~DP~g~F~n~~~~~~lg 505 (560)
.||| .+.++.++-| ++|++|.+.|++|||.++++.- .++|.
T Consensus 476 ~Yl~~~-----~~~~~W~~HfG~~w~~f~~~K~~yDP~~iL~pg--q~if~ 519 (525)
T PLN02441 476 QYLPHY-----TTQEEWKRHFGPKWETFVRRKAKFDPLAILSPG--QRIFN 519 (525)
T ss_pred EcCCCC-----CCHHHHHHHhcchHHHHHHHHhhCCchhhcCCC--CccCC
Confidence 7888 5677788888 8999999999999999999876 44543
No 9
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=100.00 E-value=9.2e-41 Score=336.62 Aligned_cols=255 Identities=21% Similarity=0.337 Sum_probs=99.2
Q ss_pred EEEEeeeCCceeEEEEecChhHHHHHHHHHHhhcCeeeEEEecCCCcEEEEecCCcccCCCC--CCCCcccccccchhhh
Q 008595 203 VKLSLEPGFKRSITFNFTDDAHIEDIFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRG--DGVNDFIGFQDTSILI 280 (560)
Q Consensus 203 vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~P~~~~~~~r~~dr~p~~~p~--~~~~~~~~~~~~~~~~ 280 (560)
||||++|.+.+..+....+.+++++.+.+++++++|++++|||++++++++..++++..... +.+.+
T Consensus 1 VTlq~~p~f~L~~~~~~~~~~e~l~~~~~~~~~~~h~e~~wfP~t~~~~v~~~~~t~~~~~~~~~~~~~----------- 69 (259)
T PF04030_consen 1 VTLQCVPAFRLRERERPEPLDEVLENLDELLASHDHFEFFWFPYTDKVVVKTWNRTDEPPSKPRNWFDD----------- 69 (259)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence 79999999999988888999999999999999999999999999999999988887654311 11110
Q ss_pred hhhhHHHHHHHHHhcccccchhhhhhhhhhhhhhccccccCCeeeccCcccccccceeeccccccccccCCccccCcccc
Q 008595 281 SKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNALIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRIN 360 (560)
Q Consensus 281 ~~~~r~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~g~~~~~~~~~g~~vvg~~~~~~~s~~c~~~~~~~~~~~w~~r~~ 360 (560)
+.++. ......+..+...+.....+...... .........++.+++++.. . |
T Consensus 70 --------~~l~~-~~~~~l~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~-~----------~------- 121 (259)
T PF04030_consen 70 --------ELLGN-FAFEALLWLARWFPSLTPPINRLSFR-LLSSSPTERVDPSYRVFNF-D----------C------- 121 (259)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------ccccc-cccccccccccccccccccccccccc-ccccccccccccccccccc-c----------c-------
Confidence 00000 00001111111111111111000000 0000112346677776632 1 1
Q ss_pred CcceEEEEEEEecccHHHHHHHHHHHHHcCCCCcCCccccCceEEeeccCCCCCCCCC--CCeEEEEEEEeccCCCCCCc
Q 008595 361 GLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQS--EDSIVVDYNYYRADDASTPR 438 (560)
Q Consensus 361 ~~~f~~~e~~iP~~~~~~~i~~v~~l~~~~~~~~~~~~~~~~i~~Rfv~~s~a~Ls~~--~d~~~i~i~~y~~~~~~~p~ 438 (560)
+..|+++||+||++++.++|++|+++++.+. ++.+++||++||+++|++||||+ +++++|++++|++.+...+
T Consensus 122 ~~~~~~~E~~iP~~~~~~~l~~l~~~~~~~~----~~~~~~pie~R~~~~d~~~Ls~~~~~~~~~i~~~~~~~~~~~~~- 196 (259)
T PF04030_consen 122 LVRFWEMEYAIPIENAPEALRELRALIDKEG----GFPVHFPIEVRFVKADDAWLSPAYGRDTCYIEIHMYRPMGDPVP- 196 (259)
T ss_dssp -----EEEEEEEGGGHHHHHHHHHHTHHHHG------GGEEEEEEEEE--B-STT-TTBTS-EEEEEEEE-S-HH---H-
T ss_pred cccceeEEEeeCHHHHHHHHHHHHHHHHHcc----cCceeEEEEEEEECCChhhcCCCCCCCEEEEEEEEeCCcccccc-
Confidence 2467889999999999999999999999765 24578999999999999999984 7999999999988643333
Q ss_pred ccHHHHHHHHHHHHhhcCCcccccCCCccchhHHHHhccCHHHHHHHHHhcCCCCCCCChhhhhh
Q 008595 439 LNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWSDEI 503 (560)
Q Consensus 439 ~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~YP~~~~F~~~r~~~DP~g~F~n~~~~~~ 503 (560)
++++++++|++ +.+|||||||||++.++++++++.||+|++|+++|+++||+|+|+|+|++++
T Consensus 197 -~~~~~~~~e~~-~~~~ggRpHWgK~~~~~~~~l~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~r~ 259 (259)
T PF04030_consen 197 -YEEFFRAFEQI-LRKYGGRPHWGKNHTLTAEQLRKLYPRLDDFLAVRKKLDPQGVFLNDYLRRV 259 (259)
T ss_dssp -HHHHHHHHHHH-HGGGT-EE-TTS-----HHHHHHT-TTHHHHHHHHHHH-TT-TT--HHHH--
T ss_pred -HHHHHHHHHHH-HHHcCCEECcCcCCCCCHHHHHHHCcCHHHHHHHHHHhCCCCCCCCHhhhcC
Confidence 89999999999 7999999999999999999999999999999999999999999999999985
No 10
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3.1e-37 Score=335.22 Aligned_cols=414 Identities=19% Similarity=0.171 Sum_probs=266.8
Q ss_pred CCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcE
Q 008595 22 GAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLT 101 (560)
Q Consensus 22 ~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~ 101 (560)
.+|. .....|..++.|+|++||+++|+.|++++.+|.++ |+|||.++.+.+. . | ++|||++||+|+++|+++++
T Consensus 23 ~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~pr-G~gts~~g~~~~~-~-g--vvl~l~~mn~i~~id~~~~~ 96 (459)
T COG0277 23 TDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPR-GGGTSLSGGAVPD-G-G--VVLDLSRLNRILEIDPEDGT 96 (459)
T ss_pred CCcc-hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEE-CCCCCccccccCC-C-c--EEEEchhhcchhccCcCCCE
Confidence 4455 45678899999999999999999999999999998 9999999988776 3 6 99999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHhcCCceeecCCCC-CccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEEc
Q 008595 102 VTADAGVPLRQLIDRVEEENLSIVAAPYWE-GVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI 180 (560)
Q Consensus 102 vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~-~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~~ 180 (560)
++||||+++.+|.++|.++|+.+|+.|++. .+||||+|++|+||..+. +||.+.|+|+++++|+++|+ ++++
T Consensus 97 ~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~-~yG~~~d~v~~l~vV~~dG~------i~~~ 169 (459)
T COG0277 97 ATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSL-RYGLTRDNVLGLRVVLPDGE------ILRL 169 (459)
T ss_pred EEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccce-ecccHHHheeEEEEEcCCce------ehhh
Confidence 999999999999999999999999999997 699999999999998885 89999999999999999999 5544
Q ss_pred CC-------ChhhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEEEe-cChhHHHHHHHHHHhh--------cCeeeEEEe
Q 008595 181 EA-------NDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITFNF-TDDAHIEDIFMDHAKK--------HEFGDITWY 244 (560)
Q Consensus 181 ~~-------~~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~e~~~~~w~ 244 (560)
.. +.++++++.||+|+|||||++||++.|.++...+... .+..+........... ....+++.-
T Consensus 170 ~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 249 (459)
T COG0277 170 GRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGVIPAALEFMDR 249 (459)
T ss_pred cCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCCCceeeeecch
Confidence 43 3456888889999999999999999999876544433 3333333221211111 111122211
Q ss_pred cCCCcEE--EEecCCcccCCCCCCCCcccccccchhhhhhhhHHHHHHHHHhcccccchhhhhhhhhhhhhhccccccCC
Q 008595 245 PSRRTAV--YRYDDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAATVLGFKKLIANGFKNNA 322 (560)
Q Consensus 245 P~~~~~~--~r~~dr~p~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~g~~~~~ 322 (560)
+ .... +......|...+..-+...-++. .... ....+.+.+.+..... ........... ....
T Consensus 250 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--------- 314 (459)
T COG0277 250 P--IKAAEAYLGGGALPLEAPARLLVEVEGSD-EAAV-DEALEALGELLLEHGL-ARDLVVAQDLA-EAAR--------- 314 (459)
T ss_pred h--HHHHHHhccccCCCCCCceEEEEEEcCCc-HHHH-HHHHHHHHHHHHhcCC-ceeEEEeCCHH-HHHH---------
Confidence 1 0000 00000111110000000000111 0000 0001111111100000 00000000000 0000
Q ss_pred eeeccCcccccccceeeccccccccccCCccccCccccCcceEEEEEEEecccHHHHHHHHHHHHHcCCCCcCCccccCc
Q 008595 323 LIFTGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNG 402 (560)
Q Consensus 323 ~~~~g~~vvg~~~~~~~s~~c~~~~~~~~~~~w~~r~~~~~f~~~e~~iP~~~~~~~i~~v~~l~~~~~~~~~~~~~~~~ 402 (560)
+ +....+ .-.+.... +..+.++++.+|.+++.++++++.++.+.... ..+
T Consensus 315 --~---------~~~r~~-----------~~~~~~~~-~~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~-------~~~ 364 (459)
T COG0277 315 --L---------WLARKG-----------ALAAAGAL-GPGVIQEDVVVPLEALPEFLREILALLDKAGL-------ALR 364 (459)
T ss_pred --H---------HHHHHH-----------HHHHHHhh-CCCccccceeeeHHHHHHHHHHHHHHHHhcCC-------Cce
Confidence 0 000000 00000001 11156678999999999999999998875321 234
Q ss_pred eEEeeccCCCCCCCCCCCeEEEEEEEeccCCCCCCcccHHHHHHHHHHHHhhcCCcccccCCCccchhHHHHhccC--HH
Q 008595 403 FLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQDVWEEVEQMAFFKYGARPHWAKNRKLAFLNVQQKYAN--FS 480 (560)
Q Consensus 403 i~~Rfv~~s~a~Ls~~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~YP~--~~ 480 (560)
+..++..++.. +++.+.+.........+.+..++++++++ ..+|||+++|.+........+.+.|++ |.
T Consensus 365 ~~~~~~~~dg~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~gG~~~~~h~~g~~~~~~~~~~~~~~~~ 435 (459)
T COG0277 365 VALFGHAGDGN--------LHLNILYDVGDEAEELARAEALNEAIEAL-AVELGGSISGEHGIGRTKAEFLELEPGEAWA 435 (459)
T ss_pred eeeecccCCCc--------ceeeeccCCCccHHHHHHHHHHHHHHHHH-HHHhCCeeEEecccchhhHHHHHHHHhHHHH
Confidence 55556555442 33333332221111123366778888888 679999999999999999999999985 99
Q ss_pred HHHHHHHhcCCCCCCCChhhhh
Q 008595 481 RFLAAKNQMDPQNMFSSEWSDE 502 (560)
Q Consensus 481 ~F~~~r~~~DP~g~F~n~~~~~ 502 (560)
.|+++|++|||+|+|.+..+..
T Consensus 436 ~~~~~k~~~DP~~i~npg~~~~ 457 (459)
T COG0277 436 LLRAIKRAFDPNGIFNPGKLFR 457 (459)
T ss_pred HHHHHHHhcCCCCCCCCCccCC
Confidence 9999999999999999876643
No 11
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.3e-32 Score=301.70 Aligned_cols=193 Identities=25% Similarity=0.319 Sum_probs=164.6
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCC
Q 008595 30 CHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVP 109 (560)
Q Consensus 30 ~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~ 109 (560)
..|.+|++|+|++||+++|+.|++++++|.++ |||||+.+.+.+. .+| ++|||++||+|+++|+++++|+||||++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~pr-GgGts~~G~~~~~-~gg--ivIdl~~mn~I~~id~~~~~vtVeaGv~ 207 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPY-GGATSIEGHTLAP-HGG--VCIDMSLMKSVKALHVEDMDVVVEPGIG 207 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEE-CCCCCCCCCccCC-CCE--EEEEccCCCCeEEEeCCCCEEEEeCCcC
Confidence 57999999999999999999999999999998 8999988776543 336 9999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEEcC-------C
Q 008595 110 LRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIE-------A 182 (560)
Q Consensus 110 l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~~~-------~ 182 (560)
+.+|.++|.++|+.+|..++ +.+||||++++|+||.... +||.+.|+|+++++|+++|+ +++.. .
T Consensus 208 ~~~L~~~L~~~Gl~~p~~p~-~~~TIGG~ia~n~~G~~s~-~yG~~~d~V~~levVl~dG~------iv~~~~~~~k~~~ 279 (555)
T PLN02805 208 WLELNEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAV-RYGTMRDNVISLKVVLPNGD------VVKTASRARKSAA 279 (555)
T ss_pred HHHHHHHHHHcCCEeCCCCc-cccChhhHhhCCCcccccC-ccccHHHhEEEEEEEcCCce------EEEecCccccCCC
Confidence 99999999999999999887 4589999999999999774 78999999999999999999 66542 2
Q ss_pred ChhhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEE--EecChhHHHHHHHHHHh
Q 008595 183 NDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITF--NFTDDAHIEDIFMDHAK 234 (560)
Q Consensus 183 ~~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~--~~~~~~~~~~~~~~~~~ 234 (560)
+.+++++++||+|+|||||++|||+.|.++..... .+.+.++..+.+.++..
T Consensus 280 g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~ 333 (555)
T PLN02805 280 GYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATML 333 (555)
T ss_pred CccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHh
Confidence 34679999999999999999999999998744322 23344555555555443
No 12
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.6e-31 Score=291.52 Aligned_cols=201 Identities=18% Similarity=0.197 Sum_probs=167.9
Q ss_pred CCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcE
Q 008595 22 GAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLT 101 (560)
Q Consensus 22 ~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~ 101 (560)
.+|.......|.+|++|+|++||+++|+.|++++++|.++ |+||+.++.+.+. .+| ++|||++||+|+++|+++++
T Consensus 46 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~r-G~Gt~~~gg~~~~-~~g--ividl~~ln~I~~id~~~~~ 121 (499)
T PRK11230 46 CDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVAR-GAGTGLSGGALPL-EKG--VLLVMARFNRILDINPVGRR 121 (499)
T ss_pred cCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEE-CCCcCcCCCcccC-CCc--EEEEcccCCCceEEcCCCCE
Confidence 4454456778999999999999999999999999999887 8888876655543 346 99999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHhcCCceeecCCCC-CccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEEc
Q 008595 102 VTADAGVPLRQLIDRVEEENLSIVAAPYWE-GVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRI 180 (560)
Q Consensus 102 vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~-~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~~ 180 (560)
|+||||+++.+|.++|.++|+.++..|+.. ..||||+|++|++|.... +||.+.|+|+++++|+++|+ ++++
T Consensus 122 v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~-~yG~~~d~v~~levVl~~G~------i~~~ 194 (499)
T PRK11230 122 ARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCL-KYGLTVHNLLKVEILTLDGE------ALTL 194 (499)
T ss_pred EEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccce-eeCChhhheeEEEEEcCCCc------EEEe
Confidence 999999999999999999999988777554 489999999999998775 79999999999999999999 7776
Q ss_pred CC------ChhhHHHHHhCCCCeEEEEEEEEEeeeCCceeEEE--EecChhHHHHHHHHHH
Q 008595 181 EA------NDPLLDAAKVSLGLLGVISEVKLSLEPGFKRSITF--NFTDDAHIEDIFMDHA 233 (560)
Q Consensus 181 ~~------~~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~~~~~--~~~~~~~~~~~~~~~~ 233 (560)
+. +.+++++++||+|+|||||++|||+.|.++..... .+.+.++..+.+.++.
T Consensus 195 ~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 195 GSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 53 33568889999999999999999999999854332 3334455555555543
No 13
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.98 E-value=6.8e-31 Score=281.56 Aligned_cols=189 Identities=25% Similarity=0.318 Sum_probs=159.4
Q ss_pred EEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHHH
Q 008595 35 VTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLI 114 (560)
Q Consensus 35 v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L~ 114 (560)
|++|+|++||+++|+.|++++++|.++ |+||+..+.+++. .++ ++|||++||+|+++|+++++++||||+++.+|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~-G~Gt~~~g~~~~~-~~~--vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~ 76 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPR-GAGTGLSGGALPE-EGG--LVLVFKHMNKILEIDVVNLTAVVQPGVRNLELE 76 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEE-CCCCCCCCCccCC-CCe--EEEEhHHcCceeEEcCCCCEEEEcCCccHHHHH
Confidence 578999999999999999999999998 8898877666553 345 999999999999999999999999999999999
Q ss_pred HHHHhcCCceeecCCCC-CccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEEcCC-------Chhh
Q 008595 115 DRVEEENLSIVAAPYWE-GVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEA-------NDPL 186 (560)
Q Consensus 115 ~~l~~~Gl~l~~~~~~~-~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~~~~-------~~~~ 186 (560)
++|.++|+.+|..+... ..||||+++||++|.... +||.++|+|+++++|+++|+ +++++. +.++
T Consensus 77 ~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~-~yG~~~d~v~~l~vV~~~G~------~~~~~~~~~~~~~g~dl 149 (413)
T TIGR00387 77 QAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGL-KYGTTVDYVLGLEVVTADGE------ILRIGGKTAKDVAGYDL 149 (413)
T ss_pred HHHHHcCCeeCCCCcccccceehhhhhcCCCCCcce-eeccHHhheeeEEEEeCCCC------EEEeCCcccCCCCCCCh
Confidence 99999999998877654 489999999999997765 79999999999999999998 665542 3356
Q ss_pred HHHHHhCCCCeEEEEEEEEEeeeCCcee--EEEEecChhHHHHHHHHHHh
Q 008595 187 LDAAKVSLGLLGVISEVKLSLEPGFKRS--ITFNFTDDAHIEDIFMDHAK 234 (560)
Q Consensus 187 f~a~~gs~G~lGVIt~vtl~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~ 234 (560)
++.+.||.|+|||||++|||++|.++.. ..+.+.+.++..+.+.++.+
T Consensus 150 ~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~ 199 (413)
T TIGR00387 150 TGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA 199 (413)
T ss_pred hhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh
Confidence 7888899999999999999999998854 33334455556555555544
No 14
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.96 E-value=1.3e-28 Score=255.86 Aligned_cols=182 Identities=24% Similarity=0.282 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHHHhCCCceEEEeCCC-CCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHHHHHHH
Q 008595 40 TEEELRLAVAHANKNKLKVKTVSKFS-HTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVE 118 (560)
Q Consensus 40 s~~ev~~iv~~a~~~~~~v~v~~ggg-hS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L~~~l~ 118 (560)
.++||+++|+.|++++.+|+++ |+| |++.+.. . ++ ++|||++||+|+++|+++++|||+||+++.+|.+.|.
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~-GgGt~~~~g~~-~---~~--~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~ 75 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIR-GGGSKDFYGRA-L---AG--EVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALA 75 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEE-CCCCCCCCCCC-C---CC--eEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHH
Confidence 4799999999999999999999 666 4655552 2 25 8999999999999999999999999999999999999
Q ss_pred hcCCceeecCC-CC-CccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEEcC-------CChhhHHH
Q 008595 119 EENLSIVAAPY-WE-GVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIE-------ANDPLLDA 189 (560)
Q Consensus 119 ~~Gl~l~~~~~-~~-~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~~~-------~~~~~f~a 189 (560)
++|+.+|+.|. +. ..||||+|++|+||+... +||.++|+|+++++|+++|+ +++++ .+.++|++
T Consensus 76 ~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~-~yG~~~D~Vlg~~vV~~~Ge------i~~~gg~v~kn~~G~DL~~l 148 (352)
T PRK11282 76 EAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRP-WAGAVRDFVLGTRLINGRGE------HLRFGGQVMKNVAGYDVSRL 148 (352)
T ss_pred HcCCeeCCCCCCcCCCcEehhHHhcCCCCcccc-ccCCHHHhEeeEEEEcCCce------EEEeCCcccCCCCCchHHHH
Confidence 99999998664 33 389999999999999885 79999999999999999999 66543 24578999
Q ss_pred HHhCCCCeEEEEEEEEEeeeCCceeEEE-EecChhHHHHHHHHHHhh
Q 008595 190 AKVSLGLLGVISEVKLSLEPGFKRSITF-NFTDDAHIEDIFMDHAKK 235 (560)
Q Consensus 190 ~~gs~G~lGVIt~vtl~l~p~~~~~~~~-~~~~~~~~~~~~~~~~~~ 235 (560)
++||+|+|||||++|||++|.++...++ ...++.+..+.+.++...
T Consensus 149 ~~Gs~GtLGVitevtlkl~P~p~~~~t~~~~~~~~~a~~~~~~~~~~ 195 (352)
T PRK11282 149 MAGSLGTLGVLLEVSLKVLPRPRAELTLRLEMDAAEALRKLNEWGGQ 195 (352)
T ss_pred HhhCCchhhhheEEEEEEEecCceEEEEEEecCHHHHHHHHHHHhcC
Confidence 9999999999999999999999866553 234556666666666543
No 15
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.95 E-value=3e-26 Score=234.71 Aligned_cols=181 Identities=23% Similarity=0.324 Sum_probs=151.8
Q ss_pred CCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhC--CCceEEEeCCCCCCCCCcccCCCCCceEEEEcC---CCCCCeeee
Q 008595 22 GAWGDRKDCHVSNVTYPTTEEELRLAVAHANKN--KLKVKTVSKFSHTIPKLACPCSQSQSTLLISTA---KLDSNIDID 96 (560)
Q Consensus 22 ~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~--~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~---~ln~i~~id 96 (560)
.+|..+..-.|.+|..|+|++||++++|.|+.. ..+|.++ |+|||..|.+.+. .+| ++|.|+ .|+++..++
T Consensus 54 ~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaar-G~GhSl~Gqa~a~-~~G--vvV~m~~~~~~~~~~~~~ 129 (505)
T KOG1231|consen 54 TDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAAR-GGGHSLEGQALAT-RGG--VVVCMDSSLLMKDVPVLV 129 (505)
T ss_pred hhccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeecc-CCcccccCccccC-CCC--eEEEEehhhccCCCceee
Confidence 456556778999999999999999999999998 4555555 7899998887652 346 776653 466666677
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccce
Q 008595 97 VANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAK 176 (560)
Q Consensus 97 ~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~ 176 (560)
.++..|.|+||..|-+|.+++.++||+.-...+....||||.+|+++.|...+ +||...++|+.++||+++|+
T Consensus 130 ~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~ltVGGtlsnagiggqaf-RyGpqi~NV~~LdVVtgkGe------ 202 (505)
T KOG1231|consen 130 VDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLPLTVGGTLSNAGIGGQAF-RYGPQISNVIELDVVTGKGE------ 202 (505)
T ss_pred cccceEEeeCChhHHHHHHHHHHcCCCccCcCCccceeecceeccCcccccee-eccchhhceEEEEEEcCCCc------
Confidence 77899999999999999999999999632222333389999999999998887 79999999999999999999
Q ss_pred EEEcCCC--hhhHHHHHhCCCCeEEEEEEEEEeeeCCce
Q 008595 177 IIRIEAN--DPLLDAAKVSLGLLGVISEVKLSLEPGFKR 213 (560)
Q Consensus 177 v~~~~~~--~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~ 213 (560)
|+++++. .++|.++.||+|.|||||++|++|+|.|++
T Consensus 203 iv~cs~r~n~~lf~~vlGglGqfGIITrArI~le~aP~~ 241 (505)
T KOG1231|consen 203 IVTCSKRANSNLFFLVLGGLGQFGIITRARIKLEPAPKR 241 (505)
T ss_pred EEecccccCceeeeeeeccCcceeeEEEEEEEeccCCcc
Confidence 9999873 467999999999999999999999999976
No 16
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.92 E-value=8.5e-25 Score=199.47 Aligned_cols=138 Identities=28% Similarity=0.384 Sum_probs=123.3
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHH
Q 008595 32 VSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLR 111 (560)
Q Consensus 32 p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~ 111 (560)
|.+|++|+|++||+++|++|++++.+++++ ++||++.+.+.. .++ ++|||++||+++++|+++++++|+||+++.
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~-g~G~~~~~~~~~--~~~--ivi~~~~l~~i~~id~~~~~v~v~aG~~~~ 75 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVR-GGGHSWTGQSSD--EGG--IVIDMSRLNKIIEIDPENGTVTVGAGVTWG 75 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEE-SSSTTSSSTTSS--TTE--EEEECTTCGCEEEEETTTTEEEEETTSBHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEE-cCCCCccccccc--CCc--EEEeeccccccccccccceeEEEeccccch
Confidence 789999999999999999999999999999 899998866651 235 999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceeecCC-CCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEEcC
Q 008595 112 QLIDRVEEENLSIVAAPY-WEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIE 181 (560)
Q Consensus 112 ~L~~~l~~~Gl~l~~~~~-~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~~~ 181 (560)
||.++|.++|+.++..+. ....||||++++|+||+... .+|.++|+|+++++|+++|+ +++++
T Consensus 76 ~l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~-~~G~~~d~v~~~~~V~~~G~------v~~~s 139 (139)
T PF01565_consen 76 DLYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSR-RYGTAADNVLSVEVVLADGE------VVRCS 139 (139)
T ss_dssp HHHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHH-HHCBGGGGEEEEEEEETTSS------EEEEE
T ss_pred hcccccccccccccccccccccceEchhhcCCCcccccc-ccccHHHeEEEEEEEcCCCc------EEEeC
Confidence 999999999999886544 44589999999999998874 68999999999999999999 77753
No 17
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.90 E-value=6.2e-23 Score=205.72 Aligned_cols=213 Identities=23% Similarity=0.299 Sum_probs=168.7
Q ss_pred ecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCC-CCCcccCCCCCceEEEEcCCCCCCeeeeC
Q 008595 19 NAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTI-PKLACPCSQSQSTLLISTAKLDSNIDIDV 97 (560)
Q Consensus 19 ~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~-~~l~~~~~~~g~~vvI~l~~ln~i~~id~ 97 (560)
.-+.-|.+.+...|..|+-|+..+||+++|+.|.+++.-+.++ |||-|. +.+.||....-..+-+||+.||+|+.+|.
T Consensus 148 di~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPi-GGGTSVs~al~cP~~E~R~iislDtsqmnriLWidr 226 (613)
T KOG1233|consen 148 DIINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPI-GGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDR 226 (613)
T ss_pred HHHHHhcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEe-CCcccccccccCCcccceeEEEecHHhhhheeEecc
Confidence 3345578888999999999999999999999999999888887 788774 45678764332123457889999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCC-ccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccce
Q 008595 98 ANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEG-VSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAK 176 (560)
Q Consensus 98 ~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~-~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~ 176 (560)
++.++.+|||+.-.+|.+.|.+.|+...+-|.... .|+||.++|.+.|.--. +||.+.|.|+.+++|+|.|.++-...
T Consensus 227 eNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN-~YGNIEDLVVh~~mVtP~Giiek~Cq 305 (613)
T KOG1233|consen 227 ENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKN-KYGNIEDLVVHLNMVTPKGIIEKQCQ 305 (613)
T ss_pred ccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeecccccccc-ccCChhHheEEEEeecCcchhhhhhc
Confidence 99999999999999999999999999888886654 79999999999998774 89999999999999999996332222
Q ss_pred EEEcCCChhhHHHH-HhCCCCeEEEEEEEEEeeeCCcee--EEEEecChhHHHHHHHHHHh
Q 008595 177 IIRIEANDPLLDAA-KVSLGLLGVISEVKLSLEPGFKRS--ITFNFTDDAHIEDIFMDHAK 234 (560)
Q Consensus 177 v~~~~~~~~~f~a~-~gs~G~lGVIt~vtl~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~ 234 (560)
+-+.+. .|+++.+ .||.|+|||||+||+|+.|.|..+ -.+.+-+.+.-...+.+.++
T Consensus 306 ~PRmS~-GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA~ 365 (613)
T KOG1233|consen 306 VPRMSS-GPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVAI 365 (613)
T ss_pred CCcccC-CCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHHH
Confidence 223332 4777775 589999999999999999998743 34444455544444455443
No 18
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.90 E-value=5.6e-24 Score=212.99 Aligned_cols=198 Identities=22% Similarity=0.286 Sum_probs=163.3
Q ss_pred eeecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCC-CCCCcccCCCCCceEEEEcCCCCCCeee
Q 008595 17 LKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHT-IPKLACPCSQSQSTLLISTAKLDSNIDI 95 (560)
Q Consensus 17 ~~~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS-~~~l~~~~~~~g~~vvI~l~~ln~i~~i 95 (560)
+.+.-++|-+++.+....+.+|.|++||++|+++|++. ++.|++.||++ ..+.+.|- .+. ++|+|.+||+|.++
T Consensus 75 L~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~--kLAVVPQGGNTgLVGgSVPv-fDE--iVlsl~~mNKi~sf 149 (511)
T KOG1232|consen 75 LENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDR--KLAVVPQGGNTGLVGGSVPV-FDE--IVLSLGLMNKILSF 149 (511)
T ss_pred HhhhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccc--cEEEecCCCCcccccCcccc-hHH--Hhhhhhhhcccccc
Confidence 44445789889999999999999999999999999885 67788899994 23333332 333 99999999999999
Q ss_pred eCCCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCC-ccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcc-cc
Q 008595 96 DVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEG-VSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKES-EG 173 (560)
Q Consensus 96 d~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~-~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~-~g 173 (560)
|+..++++++||+.|.++..+|+++|+.+|...+..+ +.|||.++|+|+|-... +||+++.+|+++++|+|+|++ +-
T Consensus 150 DevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrll-RYGsLHgsvLGle~Vlp~G~vl~~ 228 (511)
T KOG1232|consen 150 DEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLL-RYGSLHGSVLGLEVVLPNGTVLDL 228 (511)
T ss_pred ccccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEE-EecccccceeeeEEEcCCCchhhh
Confidence 9999999999999999999999999999999877665 89999999999999987 799999999999999999992 22
Q ss_pred cceEEEcCCChhhHHHHHhCCCCeEEEEEEEEEeeeCCce-eEEEEec
Q 008595 174 YAKIIRIEANDPLLDAAKVSLGLLGVISEVKLSLEPGFKR-SITFNFT 220 (560)
Q Consensus 174 ~~~v~~~~~~~~~f~a~~gs~G~lGVIt~vtl~l~p~~~~-~~~~~~~ 220 (560)
...+++-+.+.++-..++||.|.+||||+|++-+.|.++. .+.|..+
T Consensus 229 ~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi 276 (511)
T KOG1232|consen 229 LSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGI 276 (511)
T ss_pred hhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEcc
Confidence 2223333333445667899999999999999999999874 3555443
No 19
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.90 E-value=8.4e-23 Score=218.09 Aligned_cols=205 Identities=18% Similarity=0.143 Sum_probs=153.9
Q ss_pred CCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCC----CCceEEEEcCCCCCCeeeeC
Q 008595 22 GAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQ----SQSTLLISTAKLDSNIDIDV 97 (560)
Q Consensus 22 ~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~----~g~~vvI~l~~ln~i~~id~ 97 (560)
..|.. ....|.+|++|.|++||+++|+.|++++++|.+. |||-+.++.+.|.+. ++ |+|||.+||+|++||
T Consensus 30 ~D~r~-~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPR-GgGTGLtGGAvP~~~~~dR~g--VVIsl~RMNrIleID- 104 (564)
T PRK11183 30 KGFRS-GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQ-AANTGLTGGSTPNGNDYDRDI--VIISTLRLDKIQLLN- 104 (564)
T ss_pred cCccc-cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEe-CCCcccccCcccCCCCCcCCE--EEEEhhHcCCcEEEC-
Confidence 34643 4667999999999999999999999999887665 444446666666422 24 999999999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCC--CccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcc----
Q 008595 98 ANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWE--GVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKES---- 171 (560)
Q Consensus 98 ~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~--~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~---- 171 (560)
++.+++|+||+++.+|.++|+++|+.++..++.. +.||||.|+||++|.... +||.+.++++. ++|+++|++
T Consensus 105 ~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vl-Rgga~te~vL~-~~V~~dGel~lVn 182 (564)
T PRK11183 105 NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQ-RGPAYTEMALY-AQIDEDGKLELVN 182 (564)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhhe-Ecchhhhhhhh-hEECCCCcEEEee
Confidence 5678999999999999999999999877654332 579999999999999875 89999999999 999999995
Q ss_pred -------c------------cc------------------ceEEEcCCCh------hhHHHH--HhCCCCeEEEEEEEEE
Q 008595 172 -------E------------GY------------------AKIIRIEAND------PLLDAA--KVSLGLLGVISEVKLS 206 (560)
Q Consensus 172 -------~------------g~------------------~~v~~~~~~~------~~f~a~--~gs~G~lGVIt~vtl~ 206 (560)
. |+ ..|+.++++. ++.+.+ .||.|.|||| +|+|+
T Consensus 183 ~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGseGkLgV~-avrLd 261 (564)
T PRK11183 183 HLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCAGKLAVF-AVRLD 261 (564)
T ss_pred ccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCCceEEEE-EEEec
Confidence 0 11 0122222211 233344 7999999999 99999
Q ss_pred eeeCCceeEE-EEecChh-HHHHHHHHHHh
Q 008595 207 LEPGFKRSIT-FNFTDDA-HIEDIFMDHAK 234 (560)
Q Consensus 207 l~p~~~~~~~-~~~~~~~-~~~~~~~~~~~ 234 (560)
+.|.++...+ +...++. ++.+....++.
T Consensus 262 tfp~p~~~~vf~ig~n~~~~~~~~rr~il~ 291 (564)
T PRK11183 262 TFPAEKNTQVFYIGTNDPAVLTEIRRHILA 291 (564)
T ss_pred cccCCCcceEEEEeCCCHHHHHHHHHHHHH
Confidence 9999885543 4444443 34433334433
No 20
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=9.9e-22 Score=201.66 Aligned_cols=168 Identities=23% Similarity=0.266 Sum_probs=139.4
Q ss_pred CCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCC-CCCCeeeeCCC
Q 008595 21 YGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAK-LDSNIDIDVAN 99 (560)
Q Consensus 21 ~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~-ln~i~~id~~~ 99 (560)
+++| ++.+.|..++.|+|++||+++++.|++++.++.++ |+||+. +....+.+| ++|+|++ |+++ ++ +.
T Consensus 22 ~~t~--~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~-GgGsnl--l~~d~g~~g--vvI~l~~~l~~i-~~--~~ 91 (298)
T PRK13905 22 YTSF--RVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVL-GNGSNL--LVRDGGIRG--VVIRLGKGLNEI-EV--EG 91 (298)
T ss_pred ccee--ecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEE-eCCceE--EecCCCcce--EEEEecCCcceE-Ee--cC
Confidence 5556 47888999999999999999999999999999999 777752 222222346 9999998 8876 44 45
Q ss_pred cEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEE
Q 008595 100 LTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKII 178 (560)
Q Consensus 100 ~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~ 178 (560)
.+|+|+||+++.+|.++|.++||+ +.+..++++ ||||++++|+++ +++.++|+|+++++|+++|+ ++
T Consensus 92 ~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipG-TVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~------~~ 159 (298)
T PRK13905 92 NRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPG-TVGGAVFMNAGA-----YGGETADVLESVEVLDRDGE------IK 159 (298)
T ss_pred CEEEEECCCcHHHHHHHHHHcCCCcchhccCCCc-chhHHHHHcCCc-----CceEhheeEEEEEEEeCCCC------EE
Confidence 789999999999999999999995 777888886 999999999864 24589999999999999998 88
Q ss_pred EcCCChhhHHHHHhCCCC--eEEEEEEEEEeeeCC
Q 008595 179 RIEANDPLLDAAKVSLGL--LGVISEVKLSLEPGF 211 (560)
Q Consensus 179 ~~~~~~~~f~a~~gs~G~--lGVIt~vtl~l~p~~ 211 (560)
++++ ++.+++.+++.+. +||||++||++.|..
T Consensus 160 ~~~~-~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 160 TLSN-EELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EEEH-HHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 8764 3567888876554 799999999999984
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=1.1e-18 Score=178.66 Aligned_cols=170 Identities=17% Similarity=0.161 Sum_probs=131.8
Q ss_pred ecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCC
Q 008595 19 NAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVA 98 (560)
Q Consensus 19 ~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~ 98 (560)
..|++| ++.+.|.+++.|+|++||++++++|++++.++.++ |+||+. +....+.+| ++|+++++...+. .+
T Consensus 25 ~~~tt~--~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vl-GgGSNl--lv~d~g~~g--vVI~l~~~~~~i~--~~ 95 (302)
T PRK14652 25 APRTAV--RVGGPADLLVRPADPDALSALLRAVRELGVPLSIL-GGGANT--LVADAGVRG--VVLRLPQDFPGES--TD 95 (302)
T ss_pred ccccEe--ecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEE-cCCcce--eecCCCEee--EEEEecCCcceEE--ec
Confidence 346767 58999999999999999999999999999999999 677632 222223346 9999977433223 33
Q ss_pred CcEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceE
Q 008595 99 NLTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKI 177 (560)
Q Consensus 99 ~~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v 177 (560)
+.+++|+||+.+.+|.+++.++||+ +..+.++++ ||||++.||++ .++|.+.|+|+++++|+++|. .
T Consensus 96 ~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPG-TvGGav~mNaG-----a~ggei~d~v~~v~vv~~~G~------~ 163 (302)
T PRK14652 96 GGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPG-TLGGAVAMNAG-----TKLGEMKDVVTAVELATADGA------G 163 (302)
T ss_pred CCEEEEECCCcHHHHHHHHHHcCCcccccccCCCc-chhHHHHHcCC-----CCceEhhheEEEEEEECCCCc------E
Confidence 5699999999999999999999998 778888876 99999999986 268899999999999999984 2
Q ss_pred EEcCCChhhHHHHHhCC-CCeEEEEEEEEEeeeCC
Q 008595 178 IRIEANDPLLDAAKVSL-GLLGVISEVKLSLEPGF 211 (560)
Q Consensus 178 ~~~~~~~~~f~a~~gs~-G~lGVIt~vtl~l~p~~ 211 (560)
.++++ +..++.+.+. +.-||||+++|++.|..
T Consensus 164 -~~~~~-e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 164 -FVPAA-ALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred -Eeehh-hcCcccceeccCCCeEEEEEEEEEecCC
Confidence 33332 3333444321 22389999999999964
No 22
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.78 E-value=3e-18 Score=174.41 Aligned_cols=172 Identities=13% Similarity=0.192 Sum_probs=134.8
Q ss_pred cCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCC
Q 008595 20 AYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVAN 99 (560)
Q Consensus 20 ~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~ 99 (560)
.|++| ++.+.|..+++|+|++||++++++|++++.++.++ |+||+. +....+.+| ++|++.+|+++ .+|+ .
T Consensus 3 ~~tt~--~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vl-GgGSNl--l~~d~~~~g--vvi~l~~~~~~-~~~~-~ 73 (284)
T TIGR00179 3 EFTTY--KIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLIL-GEGSNL--LILDDGRGG--VIINLGKGIDI-EDDE-G 73 (284)
T ss_pred Cccee--ecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEE-ecceEE--EEccCCcCe--EEEECCCCceE-EEec-C
Confidence 45666 57889999999999999999999999999999999 677642 222223446 99999999887 4566 5
Q ss_pred cEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEE
Q 008595 100 LTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKII 178 (560)
Q Consensus 100 ~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~ 178 (560)
.+++|+||+.+.+|.+++.++||+ +..+.++++ ||||++.||+++. +..+.|.|+++++|+++|+ ++
T Consensus 74 ~~v~v~aG~~~~~l~~~~~~~Gl~GlE~l~giPG-tvGGai~mNAGay-----G~~i~d~l~~v~vv~~~G~------~~ 141 (284)
T TIGR00179 74 EYVHVGGGENWHKLVKYALKNGLSGLEFLAGIPG-TVGGAVIMNAGAY-----GVEISEVLVYATILLATGK------TE 141 (284)
T ss_pred CEEEEEcCCcHHHHHHHHHHCCCcccccCCCCCc-hHHHHHHHhcccc-----hhehhheEEEEEEEeCCCC------EE
Confidence 799999999999999999999997 778888886 9999999999853 4468889999999999998 88
Q ss_pred EcCCChhhHHHHHhCCC-C-eEEEEEEEEEeeeCCc
Q 008595 179 RIEANDPLLDAAKVSLG-L-LGVISEVKLSLEPGFK 212 (560)
Q Consensus 179 ~~~~~~~~f~a~~gs~G-~-lGVIt~vtl~l~p~~~ 212 (560)
+++.++-.|..-...+- . ..||++++|++.+.+.
T Consensus 142 ~~~~~~~~f~YR~S~f~~~~~~iil~a~~~l~~~~~ 177 (284)
T TIGR00179 142 WLTNEQLGFGYRTSIFQHKYVGLVLKAEFQLTLGFG 177 (284)
T ss_pred EEEHHHccccCCccccCCCCcEEEEEEEEEeccccc
Confidence 87754222222111111 1 3799999999966654
No 23
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=2.6e-18 Score=176.45 Aligned_cols=167 Identities=21% Similarity=0.237 Sum_probs=132.7
Q ss_pred CCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCc
Q 008595 21 YGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANL 100 (560)
Q Consensus 21 ~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~ 100 (560)
|++| ++.+.+..++.|+|++||++++++|++++.++.++ |+||. -+...++.+| ++|++++|+++ +++. .
T Consensus 28 ~tt~--~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vl-GgGSN--ll~~d~g~~G--vvI~l~~l~~i-~~~~--~ 97 (307)
T PRK13906 28 YTYT--KTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYL-GNGSN--IIIREGGIRG--IVISLLSLDHI-EVSD--D 97 (307)
T ss_pred ceEc--CcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEE-cCcee--EeecCCCcce--EEEEecCccce-EEeC--C
Confidence 4555 46788999999999999999999999999999999 77763 2222223446 99999889987 6653 5
Q ss_pred EEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEE
Q 008595 101 TVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIR 179 (560)
Q Consensus 101 ~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~ 179 (560)
+++|+||+.+.+|.+++.++||. +....++++ ||||++.||+++ ++|.++|.|+++++|+++|+ +++
T Consensus 98 ~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPG-tVGGav~mNaGa-----yGg~i~D~l~~v~vv~~~G~------~~~ 165 (307)
T PRK13906 98 AIIAGSGAAIIDVSRVARDYALTGLEFACGIPG-SIGGAVYMNAGA-----YGGEVKDCIDYALCVNEQGS------LIK 165 (307)
T ss_pred EEEEECCCcHHHHHHHHHHcCCccchhhcCCCc-cHhHHHHhhCCc-----chhhhhhheeEEEEEeCCCC------EEE
Confidence 89999999999999999999997 666667886 999999999974 34689999999999999998 888
Q ss_pred cCCChhhHHHHHhC-CC-CeEEEEEEEEEeeeC
Q 008595 180 IEANDPLLDAAKVS-LG-LLGVISEVKLSLEPG 210 (560)
Q Consensus 180 ~~~~~~~f~a~~gs-~G-~lGVIt~vtl~l~p~ 210 (560)
+++++-.| +.|.| +- .--||++++|++.|.
T Consensus 166 ~~~~e~~f-~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 166 LTTKELEL-DYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred EEHHHccC-cCCcccCCCCCEEEEEEEEEECCC
Confidence 87653333 22222 11 125999999999874
No 24
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=5.7e-18 Score=173.84 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=134.0
Q ss_pred CCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCc
Q 008595 21 YGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANL 100 (560)
Q Consensus 21 ~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~ 100 (560)
|++| ++.+.|..+++|.|++||++++++|+++++|+.++ |+||+. +....+.+| ++|+|++|+++ +++ ..
T Consensus 28 ~tt~--~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~-GgGSNl--l~~d~g~~G--vvI~l~~l~~i-~~~--~~ 97 (305)
T PRK12436 28 HTHI--KVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFL-GNGSNV--IIKDGGIRG--ITVSLIHITGV-TVT--GT 97 (305)
T ss_pred ccCc--ccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEE-cCCeEE--EEeCCCeeE--EEEEeCCcCcE-EEe--CC
Confidence 4444 57888999999999999999999999999999999 777743 222223346 99999889986 665 46
Q ss_pred EEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEE
Q 008595 101 TVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIR 179 (560)
Q Consensus 101 ~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~ 179 (560)
+++|+||+.+.+|.+++.++||. +....++++ ||||+++||+++ +++.+.|.+.++++++++|+ +++
T Consensus 98 ~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPG-tVGGav~~NAGa-----yG~~~~dvl~~v~vv~~~G~------v~~ 165 (305)
T PRK12436 98 TIVAQCGAAIIDVSRIALDHNLTGLEFACGIPG-SVGGALYMNAGA-----YGGEISFVLTEAVVMTGDGE------LRT 165 (305)
T ss_pred EEEEEeCCcHHHHHHHHHHcCCccchhhcCCcc-chhHHHHhcCcc-----chhehheeeeEEEEEeCCCC------EEE
Confidence 89999999999999999999996 666667774 999999999985 34578899999999999999 888
Q ss_pred cCCChhhHHHHHhC-CC-CeEEEEEEEEEeeeC
Q 008595 180 IEANDPLLDAAKVS-LG-LLGVISEVKLSLEPG 210 (560)
Q Consensus 180 ~~~~~~~f~a~~gs-~G-~lGVIt~vtl~l~p~ 210 (560)
++++ +..++.|.| +. ...||++++|++.+.
T Consensus 166 ~~~~-e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 166 LTKE-AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred EEHH-HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 8754 344445544 22 247999999999876
No 25
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=7.2e-18 Score=175.80 Aligned_cols=170 Identities=19% Similarity=0.154 Sum_probs=140.8
Q ss_pred cCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCC
Q 008595 20 AYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVAN 99 (560)
Q Consensus 20 ~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~ 99 (560)
.+++| ++.+.+..++.|+|++||+++++++++++.++.++ |+||. -+...++.+| ++|+++ ++++ +++.+.
T Consensus 23 ~~tt~--~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vl-GgGSN--lLv~D~g~~G--vVI~l~-~~~i-~i~~~~ 93 (363)
T PRK13903 23 PLTTL--RVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVL-GGGSN--LVIADDGFDG--TVVRVA-TRGV-TVDCGG 93 (363)
T ss_pred cccEe--ecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEE-eCCee--EeECCCCccE--EEEEeC-CCcE-EEeCCC
Confidence 35666 58889999999999999999999999999999999 67763 2333334567 999997 5775 777666
Q ss_pred cEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecC-CcccccceE
Q 008595 100 LTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPA-KESEGYAKI 177 (560)
Q Consensus 100 ~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~-G~~~g~~~v 177 (560)
.+|+|+||+.|.+|.+++.++||+ |.++.++++ ||||++.||+++ ++..++|.|+++++++.+ |+ +
T Consensus 94 ~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPG-TVGGAv~mNaGa-----yG~ei~D~l~sV~vvd~~~G~------~ 161 (363)
T PRK13903 94 GLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPG-SAGATPVQNVGA-----YGQEVSDTITRVRLLDRRTGE------V 161 (363)
T ss_pred CEEEEEcCCCHHHHHHHHHHcCCccccccCCCCc-chhhHhhcCCCh-----hHHHHhhhEeEEEEEECCCCE------E
Confidence 799999999999999999999998 999999996 999999999985 345899999999999965 98 8
Q ss_pred EEcCCChhhHHHHHhC---CCCeEEEEEEEEEeeeCC
Q 008595 178 IRIEANDPLLDAAKVS---LGLLGVISEVKLSLEPGF 211 (560)
Q Consensus 178 ~~~~~~~~~f~a~~gs---~G~lGVIt~vtl~l~p~~ 211 (560)
++++. ++.+++.|.| .+..+||++++|++.|..
T Consensus 162 ~~~~~-~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 162 RWVPA-ADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred EEEEH-HHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 88773 3567777765 223789999999999884
No 26
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.72 E-value=8.6e-17 Score=162.22 Aligned_cols=388 Identities=15% Similarity=0.180 Sum_probs=221.0
Q ss_pred EEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHHHHHHHhcCCceeecCCCCCccchhhcc-CCCcCCCCCCCCCcccccee
Q 008595 82 LLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRVEEENLSIVAAPYWEGVSVGGVIS-TGAHGSSWWGKGGAVHDHVI 160 (560)
Q Consensus 82 vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~-tgahGs~~~~~~G~~~d~V~ 160 (560)
.-|++..|..|+++|.++++|+||++|+++|+.++|.+.|++||+.+...+.|+||.|. +|.-+++. +||.+.+.++
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~Sh--kyGlfq~~~~ 181 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSH--KYGLFQHICT 181 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccc--hhhhHHhhhh
Confidence 45666667789999999999999999999999999999999999999999999999995 44444443 8999999999
Q ss_pred EEEEEecCCcccccceEEEcCCC---hhhHHHHHhCCCCeEEEEEEEEEeeeCCc-eeEEEEecC-hhHHHHHHHHHH--
Q 008595 161 GLSLVVPAKESEGYAKIIRIEAN---DPLLDAAKVSLGLLGVISEVKLSLEPGFK-RSITFNFTD-DAHIEDIFMDHA-- 233 (560)
Q Consensus 161 ~~~vV~~~G~~~g~~~v~~~~~~---~~~f~a~~gs~G~lGVIt~vtl~l~p~~~-~~~~~~~~~-~~~~~~~~~~~~-- 233 (560)
+.++|++||+ +++++++ +++|.|+-.|.|+||..+.+|+|+.|..+ .+.++.... .+++-+.+.+..
T Consensus 182 aYEvVladGe------lv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e~~~d 255 (543)
T KOG1262|consen 182 AYEVVLADGE------LVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITELSGD 255 (543)
T ss_pred eeEEEecCCe------EEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHhhccc
Confidence 9999999999 8888775 46799999999999999999999999976 455555432 333333333311
Q ss_pred -----hhcCeeeEEEecCCCcEEEEe--cCCcccCCCCCCCCcccccccchhhhhhhhHHHHHHHHHhcccccchhhhhh
Q 008595 234 -----KKHEFGDITWYPSRRTAVYRY--DDRVTLNTRGDGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTLAAT 306 (560)
Q Consensus 234 -----~~~e~~~~~w~P~~~~~~~r~--~dr~p~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~~~~ 306 (560)
+..+|++.+-|.-...+++-. .|.+... +.+-+|+. +|-=.+ .+-.-+|..+.....
T Consensus 256 sdkntk~~dfvE~liyn~~egviMvG~fad~~dak-~~~kvN~v-gwwyKp----WFykHvet~lkkge~---------- 319 (543)
T KOG1262|consen 256 SDKNTKNADFVEGLIYNKNEGVIMVGNFADKVDAK-SNAKVNDV-GWWYKP----WFYKHVETFLKKGEG---------- 319 (543)
T ss_pred ccccccccchhheeeecCCccEEEEEeccCccccc-cccccccc-hhhhhh----HHHHHHHHHHhcCCC----------
Confidence 122678877777666666533 2433322 22345552 221111 111122222211100
Q ss_pred hhhhhhhhccccccCCeee-ccCcccccccc-eee---ccccccccccCCccccCccccCc---ceEEEEEEEecccHHH
Q 008595 307 VLGFKKLIANGFKNNALIF-TGYPIVGRQGK-LQT---SGACLYSRRVDTSCAWDPRINGL---FFYETTAIFPANKFKD 378 (560)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~-~g~~vvg~~~~-~~~---s~~c~~~~~~~~~~~w~~r~~~~---~f~~~e~~iP~~~~~~ 378 (560)
...++...|-...+..+| ..-.++-+.+. +|. .=.|-+.. .-+...=-..++.. ...-...-||+....+
T Consensus 320 -~EYIPlr~YyhRHtrsifWe~~~iiPFGn~~~FRyllgWl~PPKi-a~LKaTt~ealRkly~~~hV~QDmlvPl~kl~e 397 (543)
T KOG1262|consen 320 -EEYIPLRSYYHRHTRSIFWELEDIIPFGNNPVFRYLLGWLCPPKI-AFLKATTGEALRKLYFAKHVFQDMLVPLDKLKE 397 (543)
T ss_pred -ceeeeHHHHHHhccceeEEeeeeeeecCCcHHHHHHHHhcCCChH-HHhhcccHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 000000000000000000 00000101110 000 00011100 00000000000000 0011345799999999
Q ss_pred HHHHHHHHHHcCCCCcCCcccc-Cc--eEEeeccCCCCCCCCCC-CeEEEEEEEeccC---CCCCCcccHHHHHHHHHHH
Q 008595 379 FIRDVKKLRDLKPENFCGVDSY-NG--FLIRFIKASSAYLGQSE-DSIVVDYNYYRAD---DASTPRLNQDVWEEVEQMA 451 (560)
Q Consensus 379 ~i~~v~~l~~~~~~~~~~~~~~-~~--i~~Rfv~~s~a~Ls~~~-d~~~i~i~~y~~~---~~~~p~~~~~~~~eie~~~ 451 (560)
++.-+.+.++..|-.+|....+ .| =.+|--. ..=|.++. .++++|+-.|..- ....|-.....++.+|..
T Consensus 398 ald~~hke~evYPiwlcP~~l~~qp~~Gq~~~~p--~~r~~~~~~~~my~DvGvYg~pg~v~r~e~y~~~~a~RrmEkf- 474 (543)
T KOG1262|consen 398 ALDTFHKEFEVYPIWLCPFRLYSQPGQGQLRPPP--KSRLVPGTNASMYNDVGVYGTPGQVERREPYNPTHAMRRMEKF- 474 (543)
T ss_pred HHHHHHhhheeeeeeeeeeeccCCCCCceecCCc--cccCCCCCcceeEEecccccCCccccccCCCCHHHHHHHHHHH-
Confidence 9999999999888877764321 12 1111111 12233333 4799999877432 112233345678999998
Q ss_pred HhhcCC-cccccCCCccchhHHHHhccCHHHHHHHHHhcCCCCCCCChhh
Q 008595 452 FFKYGA-RPHWAKNRKLAFLNVQQKYANFSRFLAAKNQMDPQNMFSSEWS 500 (560)
Q Consensus 452 ~~k~gG-rPHWgK~~~~~~~~~~~~YP~~~~F~~~r~~~DP~g~F~n~~~ 500 (560)
++.-+| -+-.+ .-.++.+++.+++.+ .=+.++|.+|-=.|-|-.-|-
T Consensus 475 vr~v~Gfq~~YA-d~~m~eeef~eMFd~-tLY~~~R~ky~cigaFp~vYd 522 (543)
T KOG1262|consen 475 VRSVHGFQMLYA-DIYMSEEEFWEMFDG-TLYNQVRLKYHCIGAFPRVYD 522 (543)
T ss_pred HHHccCcceeeh-hhhcCHHHHHHHhhh-HHHHHHHHHcCccccchHHHH
Confidence 555555 44332 344555666666543 445666666666666655443
No 27
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=4.7e-17 Score=166.32 Aligned_cols=171 Identities=18% Similarity=0.177 Sum_probs=136.6
Q ss_pred cCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCC-CCeeeeCC
Q 008595 20 AYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLD-SNIDIDVA 98 (560)
Q Consensus 20 ~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln-~i~~id~~ 98 (560)
.+++| ++.+.+..++.|+|++||+++++++++++.++.++ |+||. -+....+.+| ++|++++++ ++ ..+.+
T Consensus 11 ~~tt~--~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vl-G~GSN--lL~~d~g~~G--vVI~l~~~~~~i-~~~~~ 82 (295)
T PRK14649 11 PYTSW--RIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWL-GGGSN--LLVRDEGFDG--LVARYRGQRWEL-HEHGD 82 (295)
T ss_pred cccEe--eeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEE-eccee--EEEeCCCcCe--EEEEecCCCcEE-EEeCC
Confidence 35666 58899999999999999999999999999999999 56652 2332334567 999998754 44 45655
Q ss_pred CcEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceE
Q 008595 99 NLTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKI 177 (560)
Q Consensus 99 ~~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v 177 (560)
..+|+|+||+.|.+|.+++.++||+ |.++.++++ ||||++.||++. +++.+.|.|+++++++.+|+ +
T Consensus 83 ~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPG-TvGGa~~mNaGa-----yg~ei~d~l~~V~~~~~~g~------~ 150 (295)
T PRK14649 83 TAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPG-TIGGAIYGNAGC-----YGGDTATVLIRAWLLLNGSE------C 150 (295)
T ss_pred cEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCc-chhHHHHhhccc-----cceEhheeEEEEEEEeCCCC------E
Confidence 5589999999999999999999998 999999998 999999999984 56799999999999999998 8
Q ss_pred EEcCCChhhHHHHHhCC-CC---------eEEEEEEEEEeeeCC
Q 008595 178 IRIEANDPLLDAAKVSL-GL---------LGVISEVKLSLEPGF 211 (560)
Q Consensus 178 ~~~~~~~~~f~a~~gs~-G~---------lGVIt~vtl~l~p~~ 211 (560)
++++++ +.+.+.|.|. -. --||++++|++.|..
T Consensus 151 ~~~~~~-el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 151 VEWSVH-DFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred EEEeHH-HcCcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 888654 4333344331 11 139999999998864
No 28
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.69 E-value=1.7e-16 Score=161.74 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=132.7
Q ss_pred cCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccC-CCCCceEEEEcCCCCCCeeeeCC
Q 008595 20 AYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPC-SQSQSTLLISTAKLDSNIDIDVA 98 (560)
Q Consensus 20 ~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~-~~~g~~vvI~l~~ln~i~~id~~ 98 (560)
.+++| ++.+.+..++.|+|++||+++++++++ +.|+.++++|++ +..++ +.+| ++|++.+|+++ +++.
T Consensus 24 ~~tt~--~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSN----lLv~d~g~~g--vVI~l~~~~~i-~i~~- 92 (297)
T PRK14653 24 CHVSF--KIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTN----VLPKDEPMDF--VVVSTERLDDI-FVDN- 92 (297)
T ss_pred ccCEe--eeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCee----EEEecCCccE--EEEEeCCcCce-EEeC-
Confidence 35666 588999999999999999999999999 999999944443 33333 3557 99999779987 7763
Q ss_pred CcEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceE
Q 008595 99 NLTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKI 177 (560)
Q Consensus 99 ~~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v 177 (560)
..|+|+||+.+.+|..++.++||+ |.++.++|+ ||||++.||+++ +++.++|.|+++++++ +|+ +
T Consensus 93 -~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPG-TVGGAv~mNAGa-----yG~ei~d~l~~V~~~d-~g~------v 158 (297)
T PRK14653 93 -DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPG-SVGGAVYMNAGA-----YGWETAENIVEVVAYD-GKK------I 158 (297)
T ss_pred -CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCch-hHHHHHHHhCcc-----CchhhheeEEEEEEEC-CCE------E
Confidence 589999999999999999999997 999999974 999999999985 3456999999999999 677 8
Q ss_pred EEcCCChhhH--HHHH-hCCCCeEEEEEEEEEeeeCC
Q 008595 178 IRIEANDPLL--DAAK-VSLGLLGVISEVKLSLEPGF 211 (560)
Q Consensus 178 ~~~~~~~~~f--~a~~-gs~G~lGVIt~vtl~l~p~~ 211 (560)
+++++++-.| +... .+.+.+ ||++++|++.|..
T Consensus 159 ~~~~~~e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 159 IRLGKNEIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred EEEchhhccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 8887653333 3222 222344 9999999998864
No 29
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=1.7e-15 Score=154.02 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=135.8
Q ss_pred ecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccC-C-CCCceEEEEcCCCCCCeeee
Q 008595 19 NAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPC-S-QSQSTLLISTAKLDSNIDID 96 (560)
Q Consensus 19 ~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~-~-~~g~~vvI~l~~ln~i~~id 96 (560)
..|++| ++++.+..++.|+|++||+++++.+++.+.++.++++|++ +..++ + .+| ++|.+.+|+.+ +++
T Consensus 22 ~~~tt~--~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSN----lLv~D~g~~~g--~vi~~~~~~~i-~~~ 92 (302)
T PRK14650 22 ANYTTY--KIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSN----ILINDEEEIDF--PIIYTGHLNKI-EIH 92 (302)
T ss_pred ccccee--eeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeE----EEEECCCccce--EEEEECCcCcE-EEe
Confidence 346777 5888999999999999999999999999999999954444 33333 3 557 88888668886 665
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccc
Q 008595 97 VANLTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYA 175 (560)
Q Consensus 97 ~~~~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~ 175 (560)
. ..|+|+||+.|.+|.+++.++||+ |.++.++|+ ||||++.||++. +++.++|.|.++++++.+|+
T Consensus 93 ~--~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG-TVGGAv~mNAGa-----yG~ei~d~l~sV~~~d~~g~----- 159 (302)
T PRK14650 93 D--NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPG-TLGGAIWMNARC-----FGNEISEILDKITFIDEKGK----- 159 (302)
T ss_pred C--CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCc-chhHHHHhhCCc-----cccchheeEEEEEEEECCCC-----
Confidence 3 479999999999999999999998 999999996 999999999973 45689999999999999998
Q ss_pred eEEEcCCChhhHHHHHhCCC-CeEEEEEEEEEeeeCCc
Q 008595 176 KIIRIEANDPLLDAAKVSLG-LLGVISEVKLSLEPGFK 212 (560)
Q Consensus 176 ~v~~~~~~~~~f~a~~gs~G-~lGVIt~vtl~l~p~~~ 212 (560)
+++++.++-.|..-...+- .-.||++++|++.|..+
T Consensus 160 -~~~~~~~e~~f~YR~S~f~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 160 -TICKKFKKEEFKYKISPFQNKNTFILKATLNLKKGNK 196 (302)
T ss_pred -EEEEEHHHcCcccccccCCCCCEEEEEEEEEEcCCCH
Confidence 8877754333322111111 12599999999988753
No 30
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.63 E-value=1.4e-15 Score=156.96 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=134.3
Q ss_pred ecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeee--
Q 008595 19 NAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDID-- 96 (560)
Q Consensus 19 ~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id-- 96 (560)
..+++| ++.+.+..++.|.|++||+++++++++++.++.++++|++ +...++.+| ++|.+ +|+++ +++
T Consensus 10 ~~~tt~--riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSN----lLv~D~~~g--~vI~~-~~~~~-~~~~~ 79 (334)
T PRK00046 10 KPLNTF--GIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSN----VLFTEDFDG--TVLLN-RIKGI-EVLSE 79 (334)
T ss_pred ccccee--ccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEE----EEECCCCCE--EEEEe-cCCce-EEEec
Confidence 346677 5889999999999999999999999999999999954544 334445567 88887 48886 663
Q ss_pred CCC-cEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecC-Ccccc
Q 008595 97 VAN-LTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPA-KESEG 173 (560)
Q Consensus 97 ~~~-~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~-G~~~g 173 (560)
.+. ..|+|+||+.|.+|.+++.++||+ |..+.++++ ||||++.||++. +++.++|.|.++++++.+ |+
T Consensus 80 ~~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG-TVGGAv~mNaGa-----yG~ei~d~l~~V~v~d~~~g~--- 150 (334)
T PRK00046 80 DDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPG-TVGAAPIQNIGA-----YGVELKDVCDYVEALDLATGE--- 150 (334)
T ss_pred CCCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCc-chhHHHHhcCCc-----CcccHheeEEEEEEEECCCCc---
Confidence 222 379999999999999999999998 999999996 999999999974 456899999999999987 88
Q ss_pred cceEEEcCCChhhHHHHHhC-CC-C---eEEEEEEEEEeeeCC
Q 008595 174 YAKIIRIEANDPLLDAAKVS-LG-L---LGVISEVKLSLEPGF 211 (560)
Q Consensus 174 ~~~v~~~~~~~~~f~a~~gs-~G-~---lGVIt~vtl~l~p~~ 211 (560)
++++++++-.|. .|-| +- . --||++++|+|.|..
T Consensus 151 ---~~~~~~~e~~f~-YR~S~f~~~~~~~~iVl~a~f~L~~~~ 189 (334)
T PRK00046 151 ---FVRLSAAECRFG-YRDSIFKHEYPDRYAITAVGFRLPKQW 189 (334)
T ss_pred ---EEEEEHHHcCcc-cccccCCCCCcCCEEEEEEEEEecCCC
Confidence 888876432222 2222 11 1 249999999999873
No 31
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=2.8e-15 Score=150.19 Aligned_cols=172 Identities=22% Similarity=0.252 Sum_probs=140.0
Q ss_pred ecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCC
Q 008595 19 NAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVA 98 (560)
Q Consensus 19 ~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~ 98 (560)
..|++| +++..+..++.|++++||+++++.+.+.+.|+.++++|++ -+...++.+| ++|.+.+++.+ +++.+
T Consensus 10 ~~~ttf--riGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSN---lLv~d~g~~g--vvi~~~~~~~~-~~~~~ 81 (291)
T COG0812 10 KRYTTF--RIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSN---LLVRDGGIGG--VVIKLGKLNFI-EIEGD 81 (291)
T ss_pred ccceeE--ecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCce---EEEecCCCce--EEEEcccccce-eeecc
Confidence 446767 5888999999999999999999999999999999954554 2333334556 99999888875 77777
Q ss_pred CcEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceE
Q 008595 99 NLTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKI 177 (560)
Q Consensus 99 ~~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v 177 (560)
..+|+|+||+.+.+|.+++.++||. |.++.++|+ ||||++.||++- +++.++|.++++++++.+|+ +
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPG-svGgav~mNaGA-----yG~Ei~d~~~~v~~ld~~G~------~ 149 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPG-SVGGAVIMNAGA-----YGVEISDVLVSVEVLDRDGE------V 149 (291)
T ss_pred CCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCc-ccchhhhccCcc-----cccchheeEEEEEEEcCCCC------E
Confidence 6799999999999999999999998 999999996 999999999973 56789999999999999998 9
Q ss_pred EEcCCChhhHHHHHhCCCC-eEEEEEEEEEeeeC
Q 008595 178 IRIEANDPLLDAAKVSLGL-LGVISEVKLSLEPG 210 (560)
Q Consensus 178 ~~~~~~~~~f~a~~gs~G~-lGVIt~vtl~l~p~ 210 (560)
+++++++-.|..-...+-. -.||++|+|++.|.
T Consensus 150 ~~l~~~el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 150 RWLSAEELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred EEEEHHHhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 9888653333222111111 18999999999997
No 32
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.56 E-value=2.8e-14 Score=147.10 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=110.0
Q ss_pred CCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeee---eC
Q 008595 21 YGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDI---DV 97 (560)
Q Consensus 21 ~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~i---d~ 97 (560)
+++| ++++.+..++.|+|++||+++++++.+.+.|+.++++|++ -+....+.+| ++|.+.+|+++ ++ +.
T Consensus 21 ~tT~--rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSN---lL~~D~g~~G--~VI~l~~~~~i-~i~~~~~ 92 (354)
T PRK14648 21 RCSF--RIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSN---VLIADEGVPG--LMLSLRRFRSL-HTQTQRD 92 (354)
T ss_pred ccee--eeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeE---EEEeCCCccE--EEEEeCCcCce-EEeeccC
Confidence 5667 5889999999999999999999999999999999954444 2332334567 99998678886 54 22
Q ss_pred CCcEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEe
Q 008595 98 ANLTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVV 166 (560)
Q Consensus 98 ~~~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~ 166 (560)
+...|+|+||+.|.+|.+++.++||. |.++.++|+ ||||++.||++. +++.+.|.|.++++++
T Consensus 93 ~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPG-TVGGAv~mNAGA-----yG~ei~d~l~~V~v~d 156 (354)
T PRK14648 93 GSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPG-SVGGAAYMNARC-----YGRAIADCFHSARTLV 156 (354)
T ss_pred CcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCc-chhhHhhhcCCc-----cceEhhheEEEEEEEe
Confidence 22479999999999999999999998 999999996 999999999974 4568999999999994
No 33
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.43 E-value=1.6e-12 Score=130.65 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=119.1
Q ss_pred cCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCC-CCCCeeeeCC
Q 008595 20 AYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAK-LDSNIDIDVA 98 (560)
Q Consensus 20 ~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~-ln~i~~id~~ 98 (560)
.|++| ++.+.+..++ |.|++|+++++ +.++.++++|++ -+....+.+| ++|.+.+ ++.+ +++.
T Consensus 11 ~~tt~--riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSN---lL~~D~g~~g--~vI~l~~~~~~~-~~~~- 74 (273)
T PRK14651 11 RYTTL--GVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSN---LLVSDAGVPE--RVIRLGGEFAEW-DLDG- 74 (273)
T ss_pred cccEe--ecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeE---EEEcCCCcce--EEEEECCcceeE-eECC-
Confidence 36667 5788888888 99999999998 379999954554 2332334557 8888755 5543 4332
Q ss_pred CcEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceE
Q 008595 99 NLTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKI 177 (560)
Q Consensus 99 ~~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v 177 (560)
+|+||+.|.+|.+++.++||+ |.++.++|+ ||||++.||++. +++.++|.|.++++++ +|+ +
T Consensus 75 ----~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG-TVGGAv~mNaGa-----yG~ei~d~l~~V~~~~-~g~------~ 137 (273)
T PRK14651 75 ----WVGGGVPLPGLVRRAARLGLSGLEGLVGIPA-QVGGAVKMNAGT-----RFGEMADALHTVEIVH-DGG------F 137 (273)
T ss_pred ----EEECCCcHHHHHHHHHHCCCcchhhhcCCCc-chhhHHHhhCCc-----cccChheeEEEEEEEE-CCC------E
Confidence 699999999999999999998 999999996 999999999974 4568999999999997 888 8
Q ss_pred EEcCCChhhHHHHHhCCCCeEEEEEEEEEeeeC
Q 008595 178 IRIEANDPLLDAAKVSLGLLGVISEVKLSLEPG 210 (560)
Q Consensus 178 ~~~~~~~~~f~a~~gs~G~lGVIt~vtl~l~p~ 210 (560)
+++++++-.|..-...+-.--||++++|++.|.
T Consensus 138 ~~~~~~e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 138 HQYSPDELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred EEEEHHHccccccccCCCCCEEEEEEEEEECCC
Confidence 888764322322212221124999999999886
No 34
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.21 E-value=6.2e-11 Score=118.05 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=113.9
Q ss_pred CceeeecCCCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCe
Q 008595 14 GCILKNAYGAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNI 93 (560)
Q Consensus 14 ~~~~~~~~~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~ 93 (560)
++.+ ..|++| ++.+.+..++.|.+.+ + +.|+.++++|++ +...+...+ .+|-+.+++.+
T Consensus 4 ~~~L-~~~tt~--~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSN----lLv~D~g~~--~vv~~~~~~~~- 62 (257)
T PRK13904 4 IIDF-SKYSSV--KIGPPLEVLVLEEIDD-F----------SQDGQIIGGANN----LLISPNPKN--LAILGKNFDYI- 62 (257)
T ss_pred Ccch-hhcCce--eECceEEEEEEechhh-h----------CCCeEEEeceeE----EEEecCCcc--EEEEccCcCeE-
Confidence 4444 347778 5888999999999987 6 679999944444 444442233 45545567775
Q ss_pred eeeCCCcEEEEeCCCCHHHHHHHHHhcCCc-eeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCccc
Q 008595 94 DIDVANLTVTADAGVPLRQLIDRVEEENLS-IVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESE 172 (560)
Q Consensus 94 ~id~~~~~vtv~aGv~l~~L~~~l~~~Gl~-l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~ 172 (560)
+++. .+|+|+||+.|.+|.+++.++||+ |.++.++|+ ||||++.||++. +++.++|.|.++++++ |.
T Consensus 63 ~~~~--~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPG-tVGGAv~mNaGa-----~g~ei~d~l~~V~~~~--~~-- 130 (257)
T PRK13904 63 KIDG--ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPG-TLGGLVKMNAGL-----KEYEISNNLESICTNG--GW-- 130 (257)
T ss_pred EEeC--CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCc-cHHHHHHhcCCc-----CccchheeEEEEEEEe--eE--
Confidence 6654 479999999999999999999998 999999996 999999999974 4568999999999997 43
Q ss_pred ccceEEEcCCChhhHHHHHhC-CCCeEEEEEEEEEeeeCCc
Q 008595 173 GYAKIIRIEANDPLLDAAKVS-LGLLGVISEVKLSLEPGFK 212 (560)
Q Consensus 173 g~~~v~~~~~~~~~f~a~~gs-~G~lGVIt~vtl~l~p~~~ 212 (560)
++++ +.-...|-| +- .||++++|++.|..+
T Consensus 131 -------~~~~-e~~f~YR~S~~~--~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 131 -------IEKE-DIGFGYRSSGIN--GVILEARFKKTHGFD 161 (257)
T ss_pred -------EeHH-HCcccccCcCCC--cEEEEEEEEECCCCH
Confidence 2222 221122222 22 399999999998653
No 35
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by the FAD-binding domain (IPR006094 from INTERPRO) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one []. ; PDB: 3JS8_A 1I19_B 2I0K_A.
Probab=99.08 E-value=8.6e-10 Score=107.88 Aligned_cols=243 Identities=17% Similarity=0.200 Sum_probs=116.8
Q ss_pred HHHHHHhhcCeeeEEEecCCCcEEEEecCCcccCCCC----CCCCcccccccchhhhhhhhHHHHHHHHHhcccccchhh
Q 008595 228 IFMDHAKKHEFGDITWYPSRRTAVYRYDDRVTLNTRG----DGVNDFIGFQDTSILISKSTRAAEKALETAKNANGKCTL 303 (560)
Q Consensus 228 ~~~~~~~~~e~~~~~w~P~~~~~~~r~~dr~p~~~p~----~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~c~~ 303 (560)
.++.++++.--+|..|||++++-.+|.+...|..... ++-++| .|.. ...+.+.+++..+. .+....
T Consensus 25 T~~sfld~sGR~EaIWfPFT~~PWLKVWs~sP~kP~~SR~V~~PyNY-pFSD------~ip~~vtDLi~~i~--~g~~~l 95 (321)
T PF09129_consen 25 TFASFLDRSGRVEAIWFPFTDNPWLKVWSVSPTKPLLSREVTGPYNY-PFSD------NIPEPVTDLIGQIV--AGNPGL 95 (321)
T ss_dssp -HHHHHHHCSEEEEEE-TT-SS-EEEEEEE-SS--TTSEE-SSS----HHHH------S--HHHHHHHHHHH--TT-GGG
T ss_pred cHHHHHhhcCcEEEEEecCCCCcceeeeccCCCCCCcccccCCCCCC-Cccc------cccHHHHHHHHHHH--cCCccc
Confidence 3566677777789999999999888877554432221 122232 1211 01222333333332 222222
Q ss_pred hhhhhhhhhhhccccccCCeee-ccCcccccccceeeccccccccccCCccccCccccCcceEEEEEEEeccc--HHHHH
Q 008595 304 AATVLGFKKLIANGFKNNALIF-TGYPIVGRQGKLQTSGACLYSRRVDTSCAWDPRINGLFFYETTAIFPANK--FKDFI 380 (560)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~-~g~~vvg~~~~~~~s~~c~~~~~~~~~~~w~~r~~~~~f~~~e~~iP~~~--~~~~i 380 (560)
++.+- ...+++..-|... ......|++..++- --|....+.....|+|=..+ +..+|
T Consensus 96 tP~~G----q~q~~~~~aGL~~t~s~DiWGwSkd~l~----------------YirpTTLRVTAnGyAVlTrRaniQrVi 155 (321)
T PF09129_consen 96 TPLFG----QTQYAITGAGLAATDSSDIWGWSKDVLL----------------YIRPTTLRVTANGYAVLTRRANIQRVI 155 (321)
T ss_dssp HHHHH----HHHHHHHHHHHHHTT-SEEEEEHHHHH--------------------TTS---EEEEEEEEE-GGGHHHHH
T ss_pred cchhh----HHHHHHHHHHHhccccccccccccccee----------------EeccceEEEecCCEEEEecHHHHHHHH
Confidence 22221 1122221111100 12334566654431 11233456677788887654 45555
Q ss_pred HHH----HHHHHcCCCCcCCccccCceEEeeccCCC---C--------CCCC--C-----C-C-eEEEEEEEeccCCCCC
Q 008595 381 RDV----KKLRDLKPENFCGVDSYNGFLIRFIKASS---A--------YLGQ--S-----E-D-SIVVDYNYYRADDAST 436 (560)
Q Consensus 381 ~~v----~~l~~~~~~~~~~~~~~~~i~~Rfv~~s~---a--------~Ls~--~-----~-d-~~~i~i~~y~~~~~~~ 436 (560)
.+. +..++.... .-.+++..|+|||..+=|+ . -||. + + | .+|+||....+.
T Consensus 156 ~eF~~~y~~r~~~Y~~-~G~yP~NgPvEIRvtGLD~p~dv~v~~a~~P~LSAlrPrpDhpeWDvAiWldvLtlPGT---- 230 (321)
T PF09129_consen 156 NEFVAFYQERLAAYQA-QGQYPMNGPVEIRVTGLDQPADVGVPGAVPPTLSALRPRPDHPEWDVAIWLDVLTLPGT---- 230 (321)
T ss_dssp HHHHHHHHHHHHHHHH-TT-----S-EEEEEEE---GGGSSSTTS-S-TT-TT---TT-TT--EEEEEEEEE-TT-----
T ss_pred HHHHHHHHHHHHHHHH-cCCCCCCCceEEEEecCCChhhcCCCCCCCccccccCCCCCCCCcceEEEEeeccCCCC----
Confidence 554 444432211 1236788999999987543 1 2332 1 1 3 689999988653
Q ss_pred CcccHHHHHHHHHHHHhhcCC-----cccccCCCccchh------H-----HHHhc----c---CHHHHHHHHHhcCCCC
Q 008595 437 PRLNQDVWEEVEQMAFFKYGA-----RPHWAKNRKLAFL------N-----VQQKY----A---NFSRFLAAKNQMDPQN 493 (560)
Q Consensus 437 p~~~~~~~~eie~~~~~k~gG-----rPHWgK~~~~~~~------~-----~~~~Y----P---~~~~F~~~r~~~DP~g 493 (560)
| .-..|++||||.++..|.| ||.|.|-..++.+ . +...| | +|+.=.+...+|||++
T Consensus 231 P-~a~~Fyre~EqWm~~~y~g~yAt~RpEWSKGWayt~~~aw~d~~~l~~~iP~~~~~G~p~~~~Wd~A~atL~~~DPhr 309 (321)
T PF09129_consen 231 P-GANAFYREMEQWMFSNYSGSYATVRPEWSKGWAYTDDAAWTDETVLTTTIPNSYRAGQPADDNWDTARATLNRYDPHR 309 (321)
T ss_dssp T-THHHHHHHHHHHHHHHSBTTTEEEEE-TTSB-S-SSS-TT--HHHHHTHHHHHTTTTS-CCCSHHHHHHHHHHH-TT-
T ss_pred c-cHHHHHHHHHHHHHhhcCCccceEeeeeccccccCCCccccChhHHhhhchHHHhcCCCCCCCHHHHHHHHhccCccc
Confidence 4 2456999999997888988 9999999887642 2 23345 3 7999999999999999
Q ss_pred CCCChhhhhhcC
Q 008595 494 MFSSEWSDEILF 505 (560)
Q Consensus 494 ~F~n~~~~~~lg 505 (560)
+|+|+++|+||+
T Consensus 310 iFss~llD~Llp 321 (321)
T PF09129_consen 310 IFSSPLLDRLLP 321 (321)
T ss_dssp -S--HHHHHH--
T ss_pred hhccHHHHhhcC
Confidence 999999999984
No 36
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.87 E-value=0.0011 Score=62.65 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=63.1
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHH
Q 008595 32 VSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLR 111 (560)
Q Consensus 32 p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~ 111 (560)
+..++.|+|.+|+.++++ .. ...+++ .||.+..... ..+...+..+||++++..+-.|+.+++.++++|++++.
T Consensus 2 ~~~~~~P~sl~ea~~ll~--~~--~~a~~v-aGgT~l~~~~-~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~ 75 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA--KG--PDARIV-AGGTDLGVQM-REGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLS 75 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH--HG--TTEEEE-SS-TTHHHHH-HTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHH
T ss_pred CeEEEccCCHHHHHHHHh--cC--CCCEEE-eCCCccchhc-ccCccccceEEEeEEecccccEEEeccEEEECCCccHH
Confidence 456899999999999998 22 356777 5554311100 01100012899999886666666667899999999999
Q ss_pred HHHHH--HHh-------cCCceeecCCC-CCccchhhccCCCc
Q 008595 112 QLIDR--VEE-------ENLSIVAAPYW-EGVSVGGVISTGAH 144 (560)
Q Consensus 112 ~L~~~--l~~-------~Gl~l~~~~~~-~~~tvGG~i~tgah 144 (560)
+|.+. +.+ +-..+. .+.+ .-.|+||.|+.+..
T Consensus 76 ~l~~~~~~~~~~p~L~~~~~~ia-s~~IRn~aTiGGNl~~~~~ 117 (171)
T PF00941_consen 76 ELEESPLIQQYFPALAQAARRIA-SPQIRNRATIGGNLCNASP 117 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSS--HHHHTT-BHHHHHHHTBT
T ss_pred HHhhcchhhhhHHHHHHHHHHhC-CHhHeeeeeeccccccCcc
Confidence 99987 111 111111 1112 23799999976654
No 37
>PRK09799 putative oxidoreductase; Provisional
Probab=96.61 E-value=0.0059 Score=61.63 Aligned_cols=102 Identities=15% Similarity=0.037 Sum_probs=65.4
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHH
Q 008595 34 NVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQL 113 (560)
Q Consensus 34 ~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L 113 (560)
.++.|+|.+|+.++++. ++...+++ .||.+..... ...... ++||++++ .+-.+..+.+.++++|++++.+|
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~il-AGGT~L~~~~-~~~~~~--~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l 75 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWF-AGGSKLNATP-TRTDKK--IAISLQDL-ELDWIEWDNGALRIGAMSRLQPL 75 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEE-ecCCChHhhh-CCCCCC--EEEEcCCC-CCCeEEecCCEEEEccCCcHHHH
Confidence 57899999999999874 33335677 5666532111 111113 89999987 66566777789999999999999
Q ss_pred HHHHHhc-CCc--ee--ecCCCCC-ccchhhccCCC
Q 008595 114 IDRVEEE-NLS--IV--AAPYWEG-VSVGGVISTGA 143 (560)
Q Consensus 114 ~~~l~~~-Gl~--l~--~~~~~~~-~tvGG~i~tga 143 (560)
.+...-. .|. +. ..+.+-+ .||||.|+++.
T Consensus 76 ~~~~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~ 111 (258)
T PRK09799 76 RDARFIPAALREALGFVYSRHLRNQSTIGGEIAARQ 111 (258)
T ss_pred HhCcccHHHHHHHHHHhCCHHHhccchhHHHhhcCC
Confidence 8753211 111 11 1222323 79999998653
No 38
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.29 E-value=0.012 Score=59.35 Aligned_cols=102 Identities=15% Similarity=0.066 Sum_probs=64.3
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHH
Q 008595 34 NVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQL 113 (560)
Q Consensus 34 ~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L 113 (560)
.++.|+|.+|+.++++. .+-.-+++ .||++...... .... .++||++++ .+-.|+.+.+.++++|++|+.+|
T Consensus 3 ~y~~P~sl~Ea~~ll~~---~~~~a~~l-AGGTdL~~~~~-~~~~--~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l 74 (257)
T TIGR03312 3 QFFRPESTIQALELKKR---HTGVAVWF-AGGSKLNATPT-RTDK--KVAISLDKL-ALDKIELQGGALHIGAMCHLQSL 74 (257)
T ss_pred ceECCCCHHHHHHHHHh---CCCCCEEE-ecCcchhhhhc-ccCC--CEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHH
Confidence 46899999999998874 32234567 67776422111 1111 289999887 66566666789999999999999
Q ss_pred HHHHHhc-CCc--ee--ecCCCCC-ccchhhccCCC
Q 008595 114 IDRVEEE-NLS--IV--AAPYWEG-VSVGGVISTGA 143 (560)
Q Consensus 114 ~~~l~~~-Gl~--l~--~~~~~~~-~tvGG~i~tga 143 (560)
.+...-. .+. .. ..+.+-+ .|+||.|+++.
T Consensus 75 ~~~~~~~~~L~~aa~~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 75 IDNELTPAALKEALGFVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred HhCcchHHHHHHHHHHhCCHHHhccccHHHHhhcCC
Confidence 7642100 110 11 1223333 79999998654
No 39
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.17 E-value=0.01 Score=60.08 Aligned_cols=129 Identities=20% Similarity=0.349 Sum_probs=66.5
Q ss_pred ccccCccccCcceEEEEEEEecccHHHHHHHHHHHHHcCCCCcCCccccCceEEeeccCCC--CCCC---CCCCeEEEEE
Q 008595 352 SCAWDPRINGLFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASS--AYLG---QSEDSIVVDY 426 (560)
Q Consensus 352 ~~~w~~r~~~~~f~~~e~~iP~~~~~~~i~~v~~l~~~~~~~~~~~~~~~~i~~Rfv~~s~--a~Ls---~~~d~~~i~i 426 (560)
...|+..+. . ...+||-+++.+|.+.|.+-+- ... ....+|++--+..+. .-+| |.++.+++ +
T Consensus 134 ~G~WdvPHP---W--lnlfvP~s~i~dF~~~V~~~il-~~~-----~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfyl-v 201 (281)
T PF09265_consen 134 KGLWDVPHP---W--LNLFVPKSRIEDFDRGVFKGIL-KDD-----GNSGPILVYPLNRSKWDTRMSAVIPDEDVFYL-V 201 (281)
T ss_dssp CTTSSS---------EEEEEEHHHHHHHHHHCCCCCT-TTS------S-SEEEEEEEEGGGS-TTSS----SSSEEEE-E
T ss_pred cCCccccCc---c--eeeecchHHHHHHHHHHHHHhh-ccC-----CCCceEEEEEecccccCCCCcccCCCCCeEEE-E
Confidence 567874432 2 4568999999999988755331 111 123577776565543 3333 34565553 3
Q ss_pred EEeccCCCC-CCcccHHHHHHHHHHH--H--hhcCC---cccccCCCccchhHHHHhc-cCHHHHHHHHHhcCCCCCCCC
Q 008595 427 NYYRADDAS-TPRLNQDVWEEVEQMA--F--FKYGA---RPHWAKNRKLAFLNVQQKY-ANFSRFLAAKNQMDPQNMFSS 497 (560)
Q Consensus 427 ~~y~~~~~~-~p~~~~~~~~eie~~~--~--~k~gG---rPHWgK~~~~~~~~~~~~Y-P~~~~F~~~r~~~DP~g~F~n 497 (560)
-..++..+. .+...+.+.+.=.+|+ . ...|| .||| .+.++.++-| ++|++|.+.|++|||.++++.
T Consensus 202 ~lLrsa~P~~~~~~l~~l~~qN~~il~~c~~agi~~k~Yl~~~-----~t~~dW~~HFG~~W~~f~~~K~~yDP~~IL~P 276 (281)
T PF09265_consen 202 ALLRSADPSDGPDDLERLLEQNRRILEFCRKAGIGGKQYLPHY-----TTQEDWRRHFGPKWERFVERKRRYDPKAILAP 276 (281)
T ss_dssp EEEE---TTSSCCHHHHHHHHHHHHHHHHHHTT--EEESS--------SSHHHHHHHHGHHHHHHHHHHHHH-TT--B-G
T ss_pred EEeCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCceEECCCCC-----CCHHHHHHHhchHHHHHHHHHHhCCchhhcCC
Confidence 334433221 2222333332222221 1 12334 6776 6778888888 799999999999999998863
No 40
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.14 E-value=0.019 Score=62.80 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=68.4
Q ss_pred CccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCC-CCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCC
Q 008595 31 HVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIP-KLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVP 109 (560)
Q Consensus 31 ~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~-~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~ 109 (560)
....++.|+|.+|+.++++.. . ..+++ .||.+.. .+........ .+||++++..+-.+..+...++++|+++
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~~---~-~a~lv-AGGTdl~~~~~~~~~~~~--~lIdl~~I~EL~~I~~~~~~l~IGA~vT 263 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAAH---P-DARIV-AGSTDVGLWVTKQMRDLP--DVIYVGQVAELKRIEETDDGIEIGAAVT 263 (467)
T ss_pred CCceEECCCCHHHHHHHHhhC---C-CCEEE-ecCcchHHHHhcCCCCCC--eEEECCCChhhccEEEcCCEEEEecCCc
Confidence 345789999999999998753 1 34667 5665421 1111111113 8999988766655666678899999999
Q ss_pred HHHHHHHHHhc--CCc--eee--cCCCCC-ccchhhccCCC
Q 008595 110 LRQLIDRVEEE--NLS--IVA--APYWEG-VSVGGVISTGA 143 (560)
Q Consensus 110 l~~L~~~l~~~--Gl~--l~~--~~~~~~-~tvGG~i~tga 143 (560)
+.++.+.+.++ .+. +.. .+.+-+ .||||.|+++.
T Consensus 264 ~~el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 264 LTDAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS 304 (467)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC
Confidence 99998766543 111 111 222333 79999998653
No 41
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=95.22 E-value=0.015 Score=42.69 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=20.8
Q ss_pred HHHHhc--cCHHHHHHHHHhcCCCCCCCChh
Q 008595 471 NVQQKY--ANFSRFLAAKNQMDPQNMFSSEW 499 (560)
Q Consensus 471 ~~~~~Y--P~~~~F~~~r~~~DP~g~F~n~~ 499 (560)
+..+.| .++++..++|++|||+++|.++.
T Consensus 14 ~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q 44 (47)
T PF08031_consen 14 DWQEAYYGENYDRLRAIKRKYDPDNVFRFPQ 44 (47)
T ss_dssp HHHHHHHGGGHHHHHHHHHHH-TT-TS-STT
T ss_pred HHHHHHhchhHHHHHHHHHHhCccceeCCCC
Confidence 344444 68999999999999999998753
No 42
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=95.14 E-value=0.031 Score=58.12 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHH
Q 008595 33 SNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQ 112 (560)
Q Consensus 33 ~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~ 112 (560)
-.++.|+|.+|..++++.. + .-+++ .||.+.-.....+.. .+..+||+.++..+-.|+.+.+.++++|+||+.+
T Consensus 5 f~~~~P~sl~eA~~ll~~~---~-~a~iv-aGGTdl~~~~~~~~~-~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 5 FRTLRPASLADAVAALAAH---P-AARPL-AGGTDLLPNLRRGLG-QPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAA 78 (321)
T ss_pred ceEECCCCHHHHHHHHhhC---C-CCEEE-EccchHHHHHhcccC-CCCeEEECCCChhhccEEecCCEEEEeccCcHHH
Confidence 3688999999999998753 2 23567 566532111111100 1138999988765555566667899999999999
Q ss_pred HHHH--HHhcC--Cc--ee--ecCCCCC-ccchhhccCC
Q 008595 113 LIDR--VEEEN--LS--IV--AAPYWEG-VSVGGVISTG 142 (560)
Q Consensus 113 L~~~--l~~~G--l~--l~--~~~~~~~-~tvGG~i~tg 142 (560)
|.+. +.+.- |. +. ..+.+-+ .||||.|++.
T Consensus 79 l~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 79 LAEDALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred HhhChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 9663 11110 10 00 1222223 7999999964
No 43
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.00 E-value=0.029 Score=57.67 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=63.4
Q ss_pred EEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCC-CCcccCCCCCceEEEEcCCCCCCeeeeC-CCcEEEEeCCCCHH
Q 008595 34 NVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIP-KLACPCSQSQSTLLISTAKLDSNIDIDV-ANLTVTADAGVPLR 111 (560)
Q Consensus 34 ~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~-~l~~~~~~~g~~vvI~l~~ln~i~~id~-~~~~vtv~aGv~l~ 111 (560)
.++.|+|.+|+.++++.- . ..+++ .||.+.. .+...... +..+||++++..+-.|.. ++..++++|++++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~~---~-~a~iv-aGGTdl~~~~~~~~~~--p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~ 78 (291)
T PRK09971 6 EYHEAATLEEAIELLADN---P-QAKLI-AGGTDVLIQLHHHNDR--YRHLVSIHNIAELRGITLAEDGSIRIGAATTFT 78 (291)
T ss_pred ceeCCCCHHHHHHHHHhC---C-CCEEE-eccchHHHHHhCCCCC--CCeEEEcCCChhhhCeEecCCCEEEEEeCCcHH
Confidence 688999999999998752 2 34677 5665421 11111111 238999988766555663 44679999999999
Q ss_pred HHHH--HHHhcC--C--cee--ecCCCCC-ccchhhccCCC
Q 008595 112 QLID--RVEEEN--L--SIV--AAPYWEG-VSVGGVISTGA 143 (560)
Q Consensus 112 ~L~~--~l~~~G--l--~l~--~~~~~~~-~tvGG~i~tga 143 (560)
+|.+ .+.+.- | ++. ..+.+-+ .|+||.|+++.
T Consensus 79 ~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 79 QIIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred HHhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 9986 222211 0 111 1122223 79999998654
No 44
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=94.27 E-value=0.042 Score=55.68 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHHHHH-
Q 008595 38 PTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDR- 116 (560)
Q Consensus 38 P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L~~~- 116 (560)
|+|.+|+.++++.. . ..+++ .||.+.......+....+..+||++++..+-.|+.+++.++++|++|+.+|.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~iv-aGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFV-SGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEE-EccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhCh
Confidence 88999999999863 1 34677 566542111111100001289999998777777777889999999999999752
Q ss_pred -HHhc--CC--ceee--cCCCCC-ccchhhccCC
Q 008595 117 -VEEE--NL--SIVA--APYWEG-VSVGGVISTG 142 (560)
Q Consensus 117 -l~~~--Gl--~l~~--~~~~~~-~tvGG~i~tg 142 (560)
+.++ .| ++.. .+.+-+ .|+||.|+++
T Consensus 76 ~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 76 LIKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred HhHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 1111 01 1111 222323 7999999876
No 45
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=93.65 E-value=0.065 Score=52.72 Aligned_cols=114 Identities=14% Similarity=0.336 Sum_probs=65.5
Q ss_pred cceEEEEEEEecccHHHHHHHHHHHHHcCCCCcCCccccCceEEeeccCCCCCCCCCCCeEEEEEEEeccCCCCCCcccH
Q 008595 362 LFFYETTAIFPANKFKDFIRDVKKLRDLKPENFCGVDSYNGFLIRFIKASSAYLGQSEDSIVVDYNYYRADDASTPRLNQ 441 (560)
Q Consensus 362 ~~f~~~e~~iP~~~~~~~i~~v~~l~~~~~~~~~~~~~~~~i~~Rfv~~s~a~Ls~~~d~~~i~i~~y~~~~~~~p~~~~ 441 (560)
......+.+||.+++.+++++++++.+.... ....|.-.. ...+.+.+.+- ..++..+...+
T Consensus 126 ~~~~~~dv~vp~~~l~~~~~~~~~~~~~~~~----------~~~~~gH~~-------~g~~h~~~~~~-~~~~~~~~~~~ 187 (248)
T PF02913_consen 126 PVWDTEDVAVPPSRLPEFLREIRALLREYGL----------EVCHFGHAG-------DGNLHLYILFD-PRDPEEPERAE 187 (248)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHHHHCTE----------EEEEEEEEE-------ECEEEEEEEEE-TTSHHHHHHHH
T ss_pred CceeeeeecccchhhhhHHHhhhhhhhhccc----------cccceEEcc-------CCeEEEEeecc-cchHHHHHHHH
Confidence 3345579999999999999999999986431 111121111 12344434332 22222233455
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCccch---hHHHHhcc--CHHHHHHHHHhcCCCCCCC
Q 008595 442 DVWEEVEQMAFFKYGARPHWAKNRKLAF---LNVQQKYA--NFSRFLAAKNQMDPQNMFS 496 (560)
Q Consensus 442 ~~~~eie~~~~~k~gGrPHWgK~~~~~~---~~~~~~YP--~~~~F~~~r~~~DP~g~F~ 496 (560)
.+++++-++ +.++||-+- -.|.... ..+...++ .+.-+.++|+.|||+|++.
T Consensus 188 ~~~~~~~~~-~~~~gG~is--~eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 188 ALWDELYEL-VLELGGSIS--AEHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHHHHHHHH-HHHTT-BBS--SSSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHHHHHH-HHhcccccc--cccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 667777776 579999542 0122222 12334453 4888999999999999985
No 46
>PLN00192 aldehyde oxidase
Probab=93.24 E-value=0.18 Score=62.27 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=69.5
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHH
Q 008595 32 VSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLR 111 (560)
Q Consensus 32 p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~ 111 (560)
...++.|+|.+|+.++++.....+-..+++ .||.+.... ..... +.++||++++..+-.|..+...++++|++++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lv-AGgTdl~~~-k~~~~--p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~ 308 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLV-VGNTGTGYY-KDEEL--YDKYIDIRHIPELSMIRRDEKGIEIGAVVTIS 308 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEE-EeCCcceee-eccCC--CCeEEEcCCChhhhcEEecCCEEEEeecCcHH
Confidence 456899999999999987531011235566 455543211 11111 13899999877666666677899999999999
Q ss_pred HHHHHHHhcCC---ceee---------cCCCCC-ccchhhccCCC
Q 008595 112 QLIDRVEEENL---SIVA---------APYWEG-VSVGGVISTGA 143 (560)
Q Consensus 112 ~L~~~l~~~Gl---~l~~---------~~~~~~-~tvGG~i~tga 143 (560)
++.+.+...-. .+|. .+.+-+ .||||.|+++.
T Consensus 309 el~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 309 KAIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 99987765421 1121 122323 79999998763
No 47
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=92.77 E-value=0.34 Score=49.40 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=66.8
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCee-eeCCCcEEEEeCCCCH
Q 008595 32 VSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNID-IDVANLTVTADAGVPL 110 (560)
Q Consensus 32 p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~-id~~~~~vtv~aGv~l 110 (560)
+..+++|.|.+|...+++... ..+++ .||++...+.-.. ..-+..+||+.++..... +..+.+.++++|-+++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~~----~a~~l-aGGt~L~~~~k~~-~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~ 76 (284)
T COG1319 3 NFEYYRPASVEEALNLLARAP----DAKYL-AGGTDLLPLMKLG-IERPDHLVDINGLDELLGIVTTEGGSLRIGALVTL 76 (284)
T ss_pred ceEEECCCCHHHHHHHHHhCC----CcEEe-eCcchHHHHhhcc-cCCcceEEEecCChhhhceEeecCCEEEEeecccH
Confidence 457899999999999988543 34677 7887644322111 001237999988743222 3335667999999999
Q ss_pred HHHHHHHH-hcC-------CceeecCCCCC-ccchhhccCCCc
Q 008595 111 RQLIDRVE-EEN-------LSIVAAPYWEG-VSVGGVISTGAH 144 (560)
Q Consensus 111 ~~L~~~l~-~~G-------l~l~~~~~~~~-~tvGG~i~tgah 144 (560)
.+|.+--. +.- ...-..+.+-+ .||||.++...|
T Consensus 77 ~ei~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p 119 (284)
T COG1319 77 TEIARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADP 119 (284)
T ss_pred HHHHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCC
Confidence 99974321 111 11122334433 799999887776
No 48
>PLN02906 xanthine dehydrogenase
Probab=92.55 E-value=0.23 Score=61.23 Aligned_cols=104 Identities=21% Similarity=0.126 Sum_probs=67.1
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCc-ccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHH
Q 008595 33 SNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLA-CPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLR 111 (560)
Q Consensus 33 ~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~-~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~ 111 (560)
..++.|+|.+|+.++++.. . ..+++ .||.+..... ....... ++||++++..+-.|..+...++++|++++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~iv-AGGTdl~~~~~~~~~~~~--~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~ 301 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLV-VGNTEVGIEMRFKNAQYP--VLISPTHVPELNAIKVKDDGLEIGAAVRLS 301 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEE-EcCchhHHHhhhccCCCC--eEEECCCChhhhcEEecCCEEEEecCCcHH
Confidence 4688999999999988753 1 24566 4555431111 1111113 899999877766666667889999999999
Q ss_pred HHHHHHHhcCC--------ceee---------cCCCCC-ccchhhccCCC
Q 008595 112 QLIDRVEEENL--------SIVA---------APYWEG-VSVGGVISTGA 143 (560)
Q Consensus 112 ~L~~~l~~~Gl--------~l~~---------~~~~~~-~tvGG~i~tga 143 (560)
+|.+.|.+.=. .+|. .+.+-+ .||||.|+++.
T Consensus 302 el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 302 ELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 99987544310 1111 222333 79999998653
No 49
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=92.18 E-value=0.44 Score=58.85 Aligned_cols=106 Identities=18% Similarity=0.100 Sum_probs=68.3
Q ss_pred cEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHH
Q 008595 33 SNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQ 112 (560)
Q Consensus 33 ~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~ 112 (560)
..++.|+|.+|+.++++.. . .-+++ .||.+......-.... +..+||++++..+-.+..+...++++|++++.+
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lv-AGGTdl~~~~k~~~~~-~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~e 310 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVV-MGNTSVGPEVKFKGVF-HPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQ 310 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEE-ecCcchHHHhhhccCC-CCeEEECCCChhhhcEEEcCCEEEEeccccHHH
Confidence 4689999999999998753 2 34566 4555431111010001 128999988777666676678999999999999
Q ss_pred HHHHHHhc----C----Cceee---------cCCCCC-ccchhhccCCCc
Q 008595 113 LIDRVEEE----N----LSIVA---------APYWEG-VSVGGVISTGAH 144 (560)
Q Consensus 113 L~~~l~~~----G----l~l~~---------~~~~~~-~tvGG~i~tgah 144 (560)
|.+.|.+. . -.+|. .+.+-+ .||||.|+++..
T Consensus 311 l~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP 360 (1330)
T TIGR02969 311 VKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHL 360 (1330)
T ss_pred HHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCC
Confidence 99875532 0 01111 122333 799999997764
No 50
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=90.56 E-value=0.61 Score=48.62 Aligned_cols=125 Identities=17% Similarity=0.114 Sum_probs=73.5
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccC--CCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCC
Q 008595 32 VSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPC--SQSQSTLLISTAKLDSNIDIDVANLTVTADAGVP 109 (560)
Q Consensus 32 p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~--~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~ 109 (560)
....+.|.+.+|+..++..- -+.+++ -||-.+ ++-.+. ..-. .+|-...+..+-.|+...+.++++||++
T Consensus 203 ~~r~~~P~~l~D~a~l~aa~----P~Ativ-AGsTDv-gLwVtk~mr~l~--~vi~v~~l~eL~~i~~~~~~l~iGAgvt 274 (493)
T COG4630 203 DDRFIVPATLADFADLLAAH----PGATIV-AGSTDV-GLWVTKQMRDLN--PVIFVGHLAELRRIEVSTGGLEIGAGVT 274 (493)
T ss_pred CceeEeeccHHHHHHHHhhC----CCCEEE-ecCcch-hhHHHHHHhhcC--CeEEecchhhhheeeecCCcEEEccCcc
Confidence 45689999999999998642 346677 344322 222221 0112 3555555555556677788999999999
Q ss_pred HHHHHHHHHhcCCc----eeecCC---CCCccchhhccCCCc-CCCCCCCCCccccceeEEEEEecCCc
Q 008595 110 LRQLIDRVEEENLS----IVAAPY---WEGVSVGGVISTGAH-GSSWWGKGGAVHDHVIGLSLVVPAKE 170 (560)
Q Consensus 110 l~~L~~~l~~~Gl~----l~~~~~---~~~~tvGG~i~tgah-Gs~~~~~~G~~~d~V~~~~vV~~~G~ 170 (560)
+.|..+.|.++=-. ++-.++ -+-.|+||.|++|.- |-+ .-.=..++.++++-.|.
T Consensus 275 ~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDt------PPaLIALgA~ltLr~g~ 337 (493)
T COG4630 275 YTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDT------PPALIALGATLTLRSGD 337 (493)
T ss_pred HHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCC------CchhhhcCcEEEEEecC
Confidence 99999998864211 111111 122699999987642 111 11123456666665554
No 51
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=57.01 E-value=6.5 Score=33.35 Aligned_cols=26 Identities=12% Similarity=0.353 Sum_probs=20.5
Q ss_pred hHHHHhccCHHHHHHHHHhcCCCCCCCC
Q 008595 470 LNVQQKYANFSRFLAAKNQMDPQNMFSS 497 (560)
Q Consensus 470 ~~~~~~YP~~~~F~~~r~~~DP~g~F~n 497 (560)
..+.+.|| ++|.+++++|||+|.+..
T Consensus 68 ~~l~~~~P--~~w~~l~~KyDp~~~y~~ 93 (95)
T PF03392_consen 68 KFLKKNYP--DEWEELVKKYDPEGKYRK 93 (95)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTT-TTHH
T ss_pred HHHHHcCH--HHHHHHHHHHCCCcchhh
Confidence 45778888 689999999999998754
No 52
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=53.49 E-value=26 Score=42.03 Aligned_cols=105 Identities=20% Similarity=0.184 Sum_probs=64.6
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhCCCceEEE-eCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCH
Q 008595 32 VSNVTYPTTEEELRLAVAHANKNKLKVKTV-SKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPL 110 (560)
Q Consensus 32 p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~-~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l 110 (560)
--....|.|.+|+.++.+ +....+.+ +..+|-...- .+ .. . ..||.+.......+..+...++++|++++
T Consensus 214 ~~~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r-~~-~~-~--~~Id~~~v~el~~~~~~~~gi~lGa~~sl 284 (1257)
T KOG0430|consen 214 GIRWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRR-SP-DY-Q--KFIDVSGVPELKALNVDDNGLELGAALSL 284 (1257)
T ss_pred CcEEeCcccHHHHHHHHh----cCcceEEEeccccceEEec-cC-CC-c--ceechhcCchhhhcccCCCceEEcccccH
Confidence 345678999999999998 33344555 2223321111 11 12 2 68888776644445555678999999999
Q ss_pred HHHHHHHHhcCCceee---------------cCCC-CCccchhhccCCCcCC
Q 008595 111 RQLIDRVEEENLSIVA---------------APYW-EGVSVGGVISTGAHGS 146 (560)
Q Consensus 111 ~~L~~~l~~~Gl~l~~---------------~~~~-~~~tvGG~i~tgahGs 146 (560)
.++.+.|.+.-- .|. ...+ +..|+||.|.+.+-+.
T Consensus 285 s~~~~~l~~~~~-~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~~ 335 (1257)
T KOG0430|consen 285 SETMELLRKLVK-RPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQSP 335 (1257)
T ss_pred HHHHHHHHHHHh-CcHHHHHHHHHHHHHHhcccceeccccccceeEeccCCC
Confidence 999988875332 110 1112 2379999998877643
No 53
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=50.54 E-value=38 Score=30.97 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=31.7
Q ss_pred EEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCC
Q 008595 35 VTYPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKL 71 (560)
Q Consensus 35 v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l 71 (560)
-+-|++.+-+...++.++.+..+|+++..-|+++.+.
T Consensus 9 Evwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~my 45 (165)
T PF03614_consen 9 EVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMY 45 (165)
T ss_pred ccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEE
Confidence 3568999999999999999999999998888875443
No 54
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=37.56 E-value=24 Score=25.13 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=17.6
Q ss_pred cCCCCCCCCCCCccccCCcccccc
Q 008595 523 CSEDRHCSPSKGYFCKPGLVYTEA 546 (560)
Q Consensus 523 c~~d~hc~~~~~~~c~~~~~~~~~ 546 (560)
|+.+.+|+ .||+|..+.....+
T Consensus 19 C~~~~~CP--~~y~C~~~~~~~~~ 40 (45)
T PF14625_consen 19 CSPDNSCP--SGYSCHFSTSGSQY 40 (45)
T ss_pred CcCCCCCC--CcCEeeecCCCCee
Confidence 48888999 69999888776553
No 55
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=33.76 E-value=1.4e+02 Score=25.66 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCCeeeeCCCcEEEEeCCCCHHHHHHHH
Q 008595 38 PTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSNIDIDVANLTVTADAGVPLRQLIDRV 117 (560)
Q Consensus 38 P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i~~id~~~~~vtv~aGv~l~~L~~~l 117 (560)
-++..||..+++...+++.++++....|+ . +++ +|+++|++++++....|..-.+-...+
T Consensus 4 ~~~p~eI~~~Lr~L~~~~~~l~v~~~~g~--------------~-f~T-----~iL~VD~~~~~l~lD~~~~~~~n~~~l 63 (108)
T PF07317_consen 4 LRNPREILAVLRDLAKQRSPLTVRHPRGQ--------------S-FIT-----SILAVDPDRGTLVLDEGSDEEENQRLL 63 (108)
T ss_dssp E-SHHHHHHHHHHHHHTT--EEEETT-SS--------------E-EEE------EEEEETTTTEEEEE--BSGGGHHHHH
T ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCC--------------E-EEE-----EEEEEeCCCCEEEEEcCCChHHHHHHh
Confidence 36789999999999999999888622222 1 333 568999999999999988877776666
Q ss_pred HhcCCce
Q 008595 118 EEENLSI 124 (560)
Q Consensus 118 ~~~Gl~l 124 (560)
...-+.+
T Consensus 64 ~a~~~~~ 70 (108)
T PF07317_consen 64 NAEELTF 70 (108)
T ss_dssp TT--EEE
T ss_pred cCCcEEE
Confidence 6555544
No 56
>PF11478 Tachystatin_B: Antimicrobial chitin binding protein tachystatin B; InterPro: IPR020957 Tachystatin B is an antimicrobial chitin binding peptide and consists of two isotopes B1 and B2. Both structures contain a short antiparallel beta sheet with an inhibitory cysteine knot motif. Tyr(14) and Arg(17) are thought to be the essential residues for chitin binding []. ; PDB: 2DCW_A 2DCV_A.
Probab=30.49 E-value=34 Score=23.22 Aligned_cols=28 Identities=36% Similarity=1.118 Sum_probs=14.4
Q ss_pred CCCcc-eeecCCCCCCCCCCCcccc---CCcccc
Q 008595 515 CALEG-QCICSEDRHCSPSKGYFCK---PGLVYT 544 (560)
Q Consensus 515 c~~~~-~c~c~~d~hc~~~~~~~c~---~~~~~~ 544 (560)
|-..| .|---..+.|- -||+|| ||.+|.
T Consensus 4 clfrgarcrvysgrscc--fgyycrrdfpgsifg 35 (42)
T PF11478_consen 4 CLFRGARCRVYSGRSCC--FGYYCRRDFPGSIFG 35 (42)
T ss_dssp -B-TT-EEETT-SS-BS--TTEEEEESSTT-SEE
T ss_pred EEeccceEEEecCCceE--eEEEEcccCCCceee
Confidence 44444 45444444454 499998 788774
No 57
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=29.15 E-value=1e+02 Score=27.06 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=36.8
Q ss_pred CCCCCCCCCCccEEEeCCCHHHHHHHHHHHHhCCCceEEEeCCCCC
Q 008595 22 GAWGDRKDCHVSNVTYPTTEEELRLAVAHANKNKLKVKTVSKFSHT 67 (560)
Q Consensus 22 ~~w~~~~~~~p~~v~~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS 67 (560)
..|. ..+.+..++...|++|+.++.+.|.+.|++..++.-.|++
T Consensus 40 ~~W~--~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 40 EEWL--NEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred HHHH--HCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 5574 4677889999999999999999999999998777667774
No 58
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=27.28 E-value=37 Score=24.36 Aligned_cols=16 Identities=56% Similarity=1.597 Sum_probs=13.9
Q ss_pred cCCCCCCCCCCCccccC
Q 008595 523 CSEDRHCSPSKGYFCKP 539 (560)
Q Consensus 523 c~~d~hc~~~~~~~c~~ 539 (560)
|++..||=| .||.|.+
T Consensus 21 C~D~~hCCP-~G~~C~~ 36 (43)
T PF00396_consen 21 CSDGKHCCP-HGYTCDP 36 (43)
T ss_dssp SSTTTTSSS-TTSEEEC
T ss_pred cCCCCccCC-CcCEECC
Confidence 889999999 7999964
No 59
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=26.22 E-value=90 Score=34.72 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=48.5
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHhCCC-ceEE--E---eCCCCCCCCCcccCCCCCceEEEEc-CCCCCCeeeeCCCcEE
Q 008595 30 CHVSNVTYPTTEEELRLAVAHANKNKL-KVKT--V---SKFSHTIPKLACPCSQSQSTLLIST-AKLDSNIDIDVANLTV 102 (560)
Q Consensus 30 ~~p~~v~~P~s~~ev~~iv~~a~~~~~-~v~v--~---~ggghS~~~l~~~~~~~g~~vvI~l-~~ln~i~~id~~~~~v 102 (560)
+-|-..+.|.|+++|.++|+.|+++-. ||.+ - .||-|||.++- . .+|-| +++.+. ++-++
T Consensus 150 G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld------~--llL~tYs~lR~~-----~NIvl 216 (717)
T COG4981 150 GFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLD------D--LLLATYSELRSR-----DNIVL 216 (717)
T ss_pred CceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcc------c--HHHHHHHHHhcC-----CCEEE
Confidence 456678999999999999999998743 3322 1 23446776653 1 33332 333221 23356
Q ss_pred EEeCCCCHHH-HHHHHH---hcCCceeecC
Q 008595 103 TADAGVPLRQ-LIDRVE---EENLSIVAAP 128 (560)
Q Consensus 103 tv~aGv~l~~-L~~~l~---~~Gl~l~~~~ 128 (560)
-|++|+--.+ -..+|- ...+.+|.+|
T Consensus 217 ~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP 246 (717)
T COG4981 217 CVGGGIGTPDDAAPYLTGEWSTAYGFPPMP 246 (717)
T ss_pred EecCCcCChhhcccccccchhhhcCCCCCC
Confidence 7777775443 333342 2234455554
No 60
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.96 E-value=68 Score=33.17 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=30.2
Q ss_pred ccEEEeCCC------HHHHHHHHHHHHhCC----CceEEEeCCCCCCCCCc
Q 008595 32 VSNVTYPTT------EEELRLAVAHANKNK----LKVKTVSKFSHTIPKLA 72 (560)
Q Consensus 32 p~~v~~P~s------~~ev~~iv~~a~~~~----~~v~v~~ggghS~~~l~ 72 (560)
...+++|.. +++|.++++.+++.+ ..+-|+.+||+|..++.
T Consensus 42 ~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~ 92 (319)
T PF02601_consen 42 VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLW 92 (319)
T ss_pred cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhc
Confidence 345666654 789999999998765 66777789998765554
No 61
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=24.55 E-value=4.1e+02 Score=22.83 Aligned_cols=84 Identities=8% Similarity=0.095 Sum_probs=46.4
Q ss_pred EEEEEEEeccc--HHHHHHHHHHHHHc---CCCCcCCccccCceEEeeccCCCCCCCC-CCCeEEEEEEEeccCCCCCCc
Q 008595 365 YETTAIFPANK--FKDFIRDVKKLRDL---KPENFCGVDSYNGFLIRFIKASSAYLGQ-SEDSIVVDYNYYRADDASTPR 438 (560)
Q Consensus 365 ~~~e~~iP~~~--~~~~i~~v~~l~~~---~~~~~~~~~~~~~i~~Rfv~~s~a~Ls~-~~d~~~i~i~~y~~~~~~~p~ 438 (560)
.+...-++.+. ..+++.++.+.+.. .|+.+ +.+....+.+.+.+. .++.++|.|....+.+ +.
T Consensus 4 ~~i~tn~~~~~~~~~~~~~~~~~~l~~~lgkPe~~--------~~v~~~~~~~m~f~g~~~p~a~v~i~~~g~~~---~e 72 (116)
T PTZ00397 4 CQVSTNVNATDDQADAALSDIENAIADVLGKPLSY--------IMSGYDYQKHMRFGGSHDGCCFVRVTSIGGIS---RS 72 (116)
T ss_pred EEEEecCCCccccHHHHHHHHHHHHHHHhCCChHH--------EEEEEeCCceEEECCCCCceEEEEEEEecCCC---HH
Confidence 34444556554 46777777776664 34432 233333333333332 3489999999886653 23
Q ss_pred ccHHHHHHHHHHHHhhcCCcc
Q 008595 439 LNQDVWEEVEQMAFFKYGARP 459 (560)
Q Consensus 439 ~~~~~~~eie~~~~~k~gGrP 459 (560)
..+.+.++|-+.+-.+.|-.|
T Consensus 73 ~k~~l~~~i~~~l~~~lgi~~ 93 (116)
T PTZ00397 73 NNSSIAAAITKILASHLKVKS 93 (116)
T ss_pred HHHHHHHHHHHHHHHHhCcCc
Confidence 456677777776333445443
No 62
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=23.06 E-value=45 Score=35.30 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 008595 479 FSRFLAAKNQMDPQNMFSS 497 (560)
Q Consensus 479 ~~~F~~~r~~~DP~g~F~n 497 (560)
+.=..++|++|||+|+|..
T Consensus 327 ~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 327 LRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred HHHHHHHHHhcCcccCCCC
Confidence 5778899999999999875
No 63
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.49 E-value=52 Score=35.92 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=35.1
Q ss_pred HHhcCCceeecCCCCCccchhhccCCCcCCCCCCCCCccccceeEEEEEecCCcccccceEEEcCC
Q 008595 117 VEEENLSIVAAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLSLVVPAKESEGYAKIIRIEA 182 (560)
Q Consensus 117 l~~~Gl~l~~~~~~~~~tvGG~i~tgahGs~~~~~~G~~~d~V~~~~vV~~~G~~~g~~~v~~~~~ 182 (560)
|..+|+.||. |.|+|..|+- ++-| .-.+++-+|.+|+.|-.||. |+++.+
T Consensus 278 LtANGIeLPD--------V~GaivSGtA-sGDw-TLSCVRGqV~SiTFVF~DGt------irTvp~ 327 (472)
T TIGR03752 278 LTANGIELPD--------VAGAVVSGTA-SGDW-TLSCVRGQVRSLTFVFNDGT------IRTVPR 327 (472)
T ss_pred ccccCccCCC--------ccceEEeeee-ccce-EEEEEeeeEEEEEEEEeCCe------EEEecC
Confidence 5567777663 5566655532 2222 24689999999999999998 888864
No 64
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=22.42 E-value=76 Score=23.80 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=18.9
Q ss_pred cCCCCCCCCCCCccccCCcccccccccc
Q 008595 523 CSEDRHCSPSKGYFCKPGLVYTEARVCR 550 (560)
Q Consensus 523 c~~d~hc~~~~~~~c~~~~~~~~~~~c~ 550 (560)
|+.|++|+ .|.||.-...-..-.-|+
T Consensus 2 C~~D~dC~--~g~yC~~~~~~~~C~~Cr 27 (52)
T PF04706_consen 2 CSSDEDCG--YGKYCHSSSFESKCLPCR 27 (52)
T ss_pred CcccccCC--CCCCcCCCCCCccChhhc
Confidence 89999999 599998766554444443
No 65
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=21.32 E-value=1.7e+02 Score=29.63 Aligned_cols=92 Identities=20% Similarity=0.066 Sum_probs=56.1
Q ss_pred eCCCHHHHHHHHHHHHhCCCceEEEeCCCCCCCCCcccCCCCCceEEEEcCCCCCC--eeeeCCCcEEEEeCCCCHHHHH
Q 008595 37 YPTTEEELRLAVAHANKNKLKVKTVSKFSHTIPKLACPCSQSQSTLLISTAKLDSN--IDIDVANLTVTADAGVPLRQLI 114 (560)
Q Consensus 37 ~P~s~~ev~~iv~~a~~~~~~v~v~~ggghS~~~l~~~~~~~g~~vvI~l~~ln~i--~~id~~~~~vtv~aGv~l~~L~ 114 (560)
...|++|++++-+...+.|.+--++ .|||... .+.+ ++.+-..+..+ -.++.. =+=+.|++|...+
T Consensus 151 ~i~~~~d~~~a~~~i~~~g~~~Vli-KGGH~~~--~~~D------~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAI 218 (263)
T COG0351 151 KIKTEEDMKEAAKLLHELGAKAVLI-KGGHLEG--EAVD------VLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAI 218 (263)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEE-cCCCCCC--Ccee------EEEcCCceEEEeccccCCC---CCCCccHHHHHHH
Confidence 5678899999888888888887777 8999744 1111 44443311100 011211 1457999999999
Q ss_pred HHHHhcCCceeecCCCCCccchhhcc
Q 008595 115 DRVEEENLSIVAAPYWEGVSVGGVIS 140 (560)
Q Consensus 115 ~~l~~~Gl~l~~~~~~~~~tvGG~i~ 140 (560)
..-..+|+.+...-...---|-.+|.
T Consensus 219 aa~LA~G~~l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 219 AANLAKGLSLEEAVKKAKEFVTRAIR 244 (263)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 88888898876543222223344444
Done!