Your job contains 1 sequence.
>008596
MSSTEHESSDEDISSSNNNNNGNNGNNFYDIYGPQGKAEVIFKNESTLNLTDVQGLVTWV
LADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCL
SDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYY
TLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKG
QVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLEN
DLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAM
ELALLKIRNVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARK
EVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTP
EIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVK
VLEELQAQAEVALCFVGVKH
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008596
(560 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2145244 - symbol:AT5G25800 species:3702 "Arabi... 1806 3.1e-186 1
ASPGD|ASPL0000067196 - symbol:AN7566 species:162425 "Emer... 421 9.5e-57 3
DICTYBASE|DDB_G0291590 - symbol:rexo1 "RNA exonuclease 1"... 459 9.7e-56 3
POMBASE|SPAC637.09 - symbol:SPAC637.09 "ribonuclease H70 ... 559 4.3e-54 1
SGD|S000003508 - symbol:RNH70 "3'-5' exoribonuclease" spe... 473 2.9e-48 2
UNIPROTKB|F1P0Z1 - symbol:REXO1 "Uncharacterized protein"... 427 1.4e-42 3
UNIPROTKB|F1SDH3 - symbol:LOC100525449 "Uncharacterized p... 415 4.8e-42 3
UNIPROTKB|E2QX02 - symbol:REXO1 "Uncharacterized protein"... 420 9.3e-42 3
UNIPROTKB|A0PJM3 - symbol:REXO1L2P "Putative exonuclease ... 416 1.2e-41 2
UNIPROTKB|G4MYV4 - symbol:MGG_15523 "Uncharacterized prot... 382 1.2e-41 2
FB|FBgn0039544 - symbol:CG12877 species:7227 "Drosophila ... 429 1.4e-41 2
UNIPROTKB|F5GW92 - symbol:REXO1L10P "Protein REXO1L10P" s... 416 1.3e-40 2
UNIPROTKB|Q8IX06 - symbol:REXO1L1 "Exonuclease GOR" speci... 415 1.7e-40 2
UNIPROTKB|Q2T9U5 - symbol:Q2T9U5 "Putative RNA exonucleas... 404 4.6e-40 2
MGI|MGI:1914182 - symbol:Rexo1 "REX1, RNA exonuclease 1 h... 417 8.0e-40 2
UNIPROTKB|F1N3K9 - symbol:LOC100335177 "Uncharacterized p... 387 1.2e-39 2
ZFIN|ZDB-GENE-030131-1650 - symbol:rexo1 "REX1, RNA exonu... 424 2.0e-39 2
RGD|1564472 - symbol:RGD1564472 "similar to Transcription... 418 3.7e-39 1
CGD|CAL0006149 - symbol:orf19.6195 species:5476 "Candida ... 422 7.2e-39 1
UNIPROTKB|E1BDF8 - symbol:LOC788506 "Uncharacterized prot... 408 7.2e-39 2
UNIPROTKB|Q8N1G1 - symbol:REXO1 "RNA exonuclease 1 homolo... 409 9.5e-39 2
UNIPROTKB|F1P8U5 - symbol:F1P8U5 "Uncharacterized protein... 372 4.7e-37 2
UNIPROTKB|E1BR93 - symbol:LOC427001 "Uncharacterized prot... 394 3.6e-36 2
UNIPROTKB|I3LLP7 - symbol:I3LLP7 "Uncharacterized protein... 390 7.1e-36 2
UNIPROTKB|F1P5D1 - symbol:LOC427001 "Uncharacterized prot... 388 6.3e-35 2
ZFIN|ZDB-GENE-061013-448 - symbol:zgc:152968 "zgc:152968"... 393 4.7e-34 1
UNIPROTKB|E2RFH9 - symbol:LOC479820 "Uncharacterized prot... 383 4.2e-33 2
UNIPROTKB|E2RFH4 - symbol:LOC479820 "Uncharacterized prot... 371 1.7e-31 2
UNIPROTKB|Q96IC2 - symbol:44M2.3 "Putative RNA exonucleas... 364 8.6e-31 1
FB|FBgn0261548 - symbol:CG42666 species:7227 "Drosophila ... 359 3.6e-30 1
WB|WBGene00015462 - symbol:C05C8.5 species:6239 "Caenorha... 353 6.7e-30 1
FB|FBgn0035707 - symbol:CG8368 species:7227 "Drosophila m... 353 1.2e-29 1
RGD|1305412 - symbol:Exnef "exonuclease NEF-sp" species:1... 341 6.5e-29 3
UNIPROTKB|F1M6V9 - symbol:Exnef "Protein Exnef" species:1... 341 7.5e-29 2
UNIPROTKB|F1RPB4 - symbol:F1RPB4 "Uncharacterized protein... 338 9.7e-28 1
WB|WBGene00013244 - symbol:Y56A3A.33 species:6239 "Caenor... 314 1.4e-27 1
TAIR|locus:2083163 - symbol:SDN1 "small RNA degrading nuc... 312 2.4e-27 1
POMBASE|SPAC1782.08c - symbol:rex3 "exonuclease Rex3 (pre... 326 6.4e-27 1
TAIR|locus:2169717 - symbol:SDN2 "small RNA degrading nuc... 318 1.7e-26 1
WB|WBGene00004095 - symbol:pqe-1 species:6239 "Caenorhabd... 332 5.9e-26 2
CGD|CAL0006310 - symbol:orf19.4948 species:5476 "Candida ... 296 2.7e-25 1
UNIPROTKB|H3BQ98 - symbol:LOC81691 "Protein LOC81691" spe... 286 1.7e-24 1
SGD|S000004097 - symbol:REX3 "RNA exonuclease" species:49... 287 1.9e-23 1
TAIR|locus:2155563 - symbol:SDN3 "small RNA degrading nuc... 282 1.9e-21 1
UNIPROTKB|F1MZX4 - symbol:LOC614749 "Uncharacterized prot... 252 8.9e-21 1
UNIPROTKB|E2R2F5 - symbol:ISG20 "Uncharacterized protein"... 252 8.9e-21 1
UNIPROTKB|F1PWV6 - symbol:AEN "Uncharacterized protein" s... 252 8.9e-21 1
UNIPROTKB|F6X5D6 - symbol:ISG20 "Uncharacterized protein"... 252 8.9e-21 1
UNIPROTKB|J9PA78 - symbol:AEN "Uncharacterized protein" s... 252 8.9e-21 1
RGD|1305051 - symbol:Aen "apoptosis enhancing nuclease" s... 249 1.9e-20 1
TAIR|locus:2083153 - symbol:AT3G50090 species:3702 "Arabi... 249 1.9e-20 1
UNIPROTKB|Q96AZ6 - symbol:ISG20 "Interferon-stimulated ge... 248 2.4e-20 1
UNIPROTKB|I3LB04 - symbol:ISG20 "Uncharacterized protein"... 248 2.4e-20 1
UNIPROTKB|E1BNM5 - symbol:ISG20 "Uncharacterized protein"... 246 4.0e-20 1
UNIPROTKB|G3N2Q8 - symbol:ISG20 "Uncharacterized protein"... 246 4.0e-20 1
ZFIN|ZDB-GENE-070928-8 - symbol:isg20l2 "interferon stimu... 246 4.0e-20 1
UNIPROTKB|H9L3P1 - symbol:H9L3P1 "Uncharacterized protein... 244 6.6e-20 1
UNIPROTKB|H9L3P2 - symbol:H9L3P2 "Uncharacterized protein... 244 6.6e-20 1
UNIPROTKB|F1SRT3 - symbol:AEN "Uncharacterized protein" s... 244 6.6e-20 1
ASPGD|ASPL0000071877 - symbol:AN5013 species:162425 "Emer... 198 7.0e-20 2
UNIPROTKB|Q66UW5 - symbol:Isg20 "Interferon-stimulated ge... 242 1.1e-19 1
UNIPROTKB|Q8WTP8 - symbol:AEN "Apoptosis-enhancing nuclea... 241 1.4e-19 1
UNIPROTKB|Q5REE2 - symbol:AEN "Apoptosis-enhancing nuclea... 239 2.3e-19 1
UNIPROTKB|H3BM72 - symbol:LOC81691 "Protein LOC81691" spe... 238 3.0e-19 1
UNIPROTKB|F8WG03 - symbol:Aen "Apoptosis-enhancing nuclea... 249 3.2e-19 1
UNIPROTKB|E1C018 - symbol:AEN "Uncharacterized protein" s... 231 1.7e-18 1
FB|FBgn0036405 - symbol:CG6833 species:7227 "Drosophila m... 225 7.7e-18 1
MGI|MGI:1915298 - symbol:Aen "apoptosis enhancing nucleas... 234 1.5e-17 1
RGD|1306407 - symbol:Isg20 "interferon stimulated exonucl... 220 2.7e-17 1
UNIPROTKB|F1RHI9 - symbol:ISG20L2 "Uncharacterized protei... 233 2.8e-17 1
RGD|1359413 - symbol:Isg20l2 "interferon stimulated exonu... 226 9.7e-17 2
UNIPROTKB|Q2YDK1 - symbol:ISG20L2 "Interferon-stimulated ... 226 2.5e-16 1
UNIPROTKB|G4N4M9 - symbol:MGG_06005 "RNA exonuclease 3" s... 166 5.6e-16 3
MGI|MGI:2140076 - symbol:Isg20l2 "interferon stimulated e... 224 6.3e-16 1
UNIPROTKB|E2QS77 - symbol:ISG20L2 "Uncharacterized protei... 222 7.6e-16 1
UNIPROTKB|Q9H9L3 - symbol:ISG20L2 "Interferon-stimulated ... 221 1.1e-15 1
WB|WBGene00012465 - symbol:Y17G7B.12 species:6239 "Caenor... 199 5.0e-15 1
ASPGD|ASPL0000070457 - symbol:AN4357 species:162425 "Emer... 225 1.1e-14 2
TAIR|locus:2086320 - symbol:AT3G15080 species:3702 "Arabi... 200 1.2e-14 1
UNIPROTKB|F1N5B5 - symbol:REXO4 "Uncharacterized protein"... 214 1.3e-14 1
CGD|CAL0003518 - symbol:orf19.5220 species:5476 "Candida ... 203 1.7e-14 1
POMBASE|SPBC1604.09c - symbol:SPBC1604.09c "exoribonuclea... 194 1.7e-14 1
UNIPROTKB|Q9GZR2 - symbol:REXO4 "RNA exonuclease 4" speci... 210 4.4e-14 1
UNIPROTKB|I3L751 - symbol:REXO4 "Uncharacterized protein"... 209 5.7e-14 1
ZFIN|ZDB-GENE-120215-216 - symbol:si:ch73-209e20.4 "si:ch... 205 1.6e-13 1
ASPGD|ASPL0000065793 - symbol:AN10955 species:162425 "Eme... 198 1.9e-13 1
SGD|S000005440 - symbol:REX4 "Putative RNA exonuclease po... 195 3.2e-13 1
UNIPROTKB|F1PBR5 - symbol:REXO4 "Uncharacterized protein"... 201 4.2e-13 1
UNIPROTKB|H0YMM4 - symbol:ISG20 "Interferon-stimulated ge... 179 7.2e-13 1
UNIPROTKB|F1NQP7 - symbol:Gga.48606 "Uncharacterized prot... 189 9.4e-12 1
UNIPROTKB|H9KZR7 - symbol:H9KZR7 "Uncharacterized protein... 189 9.5e-12 2
RGD|1306220 - symbol:Rexo4 "REX4, RNA exonuclease 4 homol... 185 2.6e-11 1
MGI|MGI:2684957 - symbol:Rexo4 "REX4, RNA exonuclease 4 h... 185 2.9e-11 1
MGI|MGI:1928895 - symbol:Isg20 "interferon-stimulated pro... 173 2.1e-10 1
DICTYBASE|DDB_G0281327 - symbol:rexo4 "RNA exonuclease 4"... 169 5.9e-10 1
UNIPROTKB|E2R7T9 - symbol:REXO4 "Uncharacterized protein"... 173 6.8e-10 1
ZFIN|ZDB-GENE-030131-3113 - symbol:pan2 "PAN2 poly(A) spe... 162 4.9e-08 1
DICTYBASE|DDB_G0269694 - symbol:pan2 "polyA specific ribo... 149 8.0e-08 2
UNIPROTKB|H3BLY5 - symbol:ISG20 "Interferon-stimulated ge... 131 1.1e-07 1
UNIPROTKB|E1BML0 - symbol:PAN2 "Uncharacterized protein" ... 157 1.7e-07 1
WARNING: Descriptions of 17 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2145244 [details] [associations]
symbol:AT5G25800 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR017849 SMART:SM00479 Pfam:PF00929 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003676 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
Gene3D:3.40.720.10 EMBL:AC005405 KO:K14570 EMBL:AY128370
IPI:IPI00537859 IPI:IPI00915141 RefSeq:NP_197952.2 UniGene:At.30891
ProteinModelPortal:Q8L7M4 SMR:Q8L7M4 PaxDb:Q8L7M4 PRIDE:Q8L7M4
EnsemblPlants:AT5G25800.1 GeneID:832649 KEGG:ath:AT5G25800
TAIR:At5g25800 HOGENOM:HOG000244006 OMA:KETILVG PhylomeDB:Q8L7M4
ProtClustDB:CLSN2681069 Genevestigator:Q8L7M4 Uniprot:Q8L7M4
Length = 567
Score = 1806 (640.8 bits), Expect = 3.1e-186, P = 3.1e-186
Identities = 363/542 (66%), Positives = 432/542 (79%)
Query: 28 FYDIYGPQGKAEVIFKN-ESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYV 86
F+DIYGP+ KAE+ FK+ E+TLNL DVQGLVTWVLA+G MPSWVFIKNKPLI KVV+LY+
Sbjct: 30 FFDIYGPEAKAELDFKSPETTLNLQDVQGLVTWVLAEGFMPSWVFIKNKPLIPKVVLLYL 89
Query: 87 PGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVDSMT 146
PGLDAALYLS SKTL+ K CC P ALLALSC+ D M TID +LTCK ++K+ S+
Sbjct: 90 PGLDAALYLSHSKTLSSLKSCCGNPMALLALSCVVDEMRTIDTILTCKGRKKKTVTSSVE 149
Query: 147 KSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAP 206
S E C+ + + S EL KDIPFP++YYTL++K++E N Y + + T+PAP
Sbjct: 150 PPPLVSSPEACNLMGK--SFVELTKDIPFPVSYYTLSQKEMEQNGYTFEKLELTPTLPAP 207
Query: 207 FGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITH 266
GS P EI+ALDCEMC T EGLELTRVTLVDI+GQVLLDKLV P+N I DYNTRYSGIT
Sbjct: 208 SGSCPPEIVALDCEMCITKEGLELTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITA 267
Query: 267 EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGS 326
M+ GVTT+LKDIQEEFLKLV+KETILVGHSLENDLL+LKISH LVIDTAVLYKHP G S
Sbjct: 268 VMMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLYKHPHGRS 327
Query: 327 HKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN---------VMRTKLLK 377
+KT LR+LAKKFL+REIQ+S GHDS EDA+AAM+LALLKI++ V+R KLL
Sbjct: 328 YKTKLRILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKHGPDFGSPPEVIRKKLLA 387
Query: 378 VLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSEL 437
VL E GKT+++IDN++I+KRYASESS+AIPVSSDDE LSKA KEVKN R FVWTQFSEL
Sbjct: 388 VLNESGKTTSIIDNINIVKRYASESSNAIPVSSDDEALSKAVKEVKNKRSQFVWTQFSEL 447
Query: 438 NLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLY 497
N HF+ +A D KLN +LAE+ISL TC+KK S K KS V+PE KEIL + + RV SLY
Sbjct: 448 NAHFQSRADDPQKLNSRLAEMISLLTCNKK-SGLK--KSNVSPETKEILKKMNERVQSLY 504
Query: 498 TALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRKMIVKVLEELQAQAEVALCFVG 557
ALPTN M I+CTGHGDT+IVHR+R+ML+++ + R+ +VKVLEELQAQAEVALCFVG
Sbjct: 505 AALPTNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFDREKLVKVLEELQAQAEVALCFVG 564
Query: 558 VK 559
+K
Sbjct: 565 IK 566
>ASPGD|ASPL0000067196 [details] [associations]
symbol:AN7566 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003676 GO:GO:0005622 EMBL:AACD01000129 EMBL:BN001304
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 OrthoDB:EOG4MKRQF HOGENOM:HOG000165759 RefSeq:XP_680835.1
ProteinModelPortal:Q5AVW4 EnsemblFungi:CADANIAT00000673
GeneID:2869567 KEGG:ani:AN7566.2 OMA:WARMREL Uniprot:Q5AVW4
Length = 723
Score = 421 (153.3 bits), Expect = 9.5e-57, Sum P(3) = 9.5e-57
Identities = 83/155 (53%), Positives = 113/155 (72%)
Query: 213 EILALDCEMCYTNEGL-ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
++LALDCEMC T G ELTR++LV G+V+LD+LVKP ++DY TR+SGIT EML
Sbjct: 344 DVLALDCEMCITEGGSSELTRISLVRWDGEVVLDELVKPRLPVIDYLTRFSGITKEMLDP 403
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSL 331
VTT+L+DIQ++ L ++ +ILVGHSL +DL ALK++H ++DT LY HP+G + SL
Sbjct: 404 VTTTLRDIQQKLLNIITPRSILVGHSLNSDLNALKLTHPFIVDTVFLYPHPRGPPLRASL 463
Query: 332 RVLAKKFLSREIQQSGFGHDSTEDARAAMELALLK 366
+ L +K+L +EIQ+ GHDS EDARA +EL K
Sbjct: 464 KWLTQKYLGKEIQKGTTGHDSIEDARAVLELVKQK 498
Score = 115 (45.5 bits), Expect = 9.5e-57, Sum P(3) = 9.5e-57
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 45 ESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAAL 93
+S++ + D+Q L+ + ADG+ P W+ +KN I+K V L VPGL+ +
Sbjct: 97 QSSIRIADLQNLLLFCFADGVAPQWIAVKNTTRIRKAVFLMVPGLELGM 145
Score = 96 (38.9 bits), Expect = 9.5e-57, Sum P(3) = 9.5e-57
Identities = 36/153 (23%), Positives = 69/153 (45%)
Query: 383 GKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDR---------IHFVWTQ 433
G+T ++D + + ++++ AI S D+ V+ + V D + F W +
Sbjct: 536 GRTGAVVDWGNPERGLGAQATVAIGCSDDEAVVKGIQAAVNGDESKPSIPGGGVDFTWAR 595
Query: 434 FSELNLH--FKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDA 491
EL ++ + + D + N +L D S S+ S P + +++T +
Sbjct: 596 MRELEIYRGWCNRIPDPSNANTS-----TLIAFDSSSSSSE---SRTLPTV---VSQTVS 644
Query: 492 RVNSLYTALPTNTMLIICTGHGDTAIVHRLREM 524
R+ +Y ALP T+ ++ +G GD V RL+ M
Sbjct: 645 RIKEVYDALPACTLFVVYSGTGDPREVSRLQAM 677
>DICTYBASE|DDB_G0291590 [details] [associations]
symbol:rexo1 "RNA exonuclease 1" species:44689
"Dictyostelium discoideum" [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IC] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 dictyBase:DDB_G0291590 Pfam:PF00929 EMBL:AAFI02000177
GenomeReviews:CM000155_GR GO:GO:0003676 GO:GO:0005622
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0016070
GO:GO:0008408 KO:K14570 RefSeq:XP_635319.1
ProteinModelPortal:Q54EC1 EnsemblProtists:DDB0305007 GeneID:8628263
KEGG:ddi:DDB_G0291590 InParanoid:Q54EC1 OMA:EMLAIDC Uniprot:Q54EC1
Length = 694
Score = 459 (166.6 bits), Expect = 9.7e-56, Sum P(3) = 9.7e-56
Identities = 141/416 (33%), Positives = 215/416 (51%)
Query: 106 ECCDKPRALL---ALSCLSDTMLTIDGLLTCK-LKRK---RNAVDSMTKSTQPSQKENCS 158
+ C+K R + + L D L +G T K LK N V + +PS ++
Sbjct: 227 DTCEKMRKEIEPISFYLLDDQQLVENGYFTIKDLKDGWVYSNQVKQILNLIKPSNDDD-- 284
Query: 159 TVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALD 218
N+++ E P T T +DNN N ++ + E+LA+D
Sbjct: 285 ---NNNNNQEEDNGASSPTT---TTVNSDDDNND--NNNNLINKL----NLKVKEMLAID 332
Query: 219 CEMCYTNEG-LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLK 277
CEMC T G LELTR+++V+ + +V+L++LV P I+DY T+YSGIT + L VT L
Sbjct: 333 CEMCRTEGGQLELTRISIVNEQKKVVLNELVLPEKPIIDYLTQYSGITADTLKNVTNRLS 392
Query: 278 DIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKK 337
DI + KLV +T+L+GHSLENDL A+K H +IDT++LY P G S K SL+ L KK
Sbjct: 393 DIHAKLEKLVGVDTVLIGHSLENDLKAMKFIHRKIIDTSILY--PTGSSGKFSLKYLTKK 450
Query: 338 FLSREIQQS--G-FGHDSTEDARAAMELALLKIRN--VMRTKLLKV--LFE----YGKTS 386
+L+R IQ + G GHDS EDARAAM+LA LKI+ T+L + LF+ + K S
Sbjct: 451 YLNRIIQSTKHGKLGHDSIEDARAAMDLAQLKIQKGKSFGTRLASMENLFDKINKHEKKS 510
Query: 387 TLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIH-FVWTQFSELNLHFKKQA 445
+ ID + IK + S+ +D+EV+ K K+ N +++Q + L+ HFK
Sbjct: 511 SFIDRLEDIKTFTSQVVSCFNCENDNEVIEKIIKQSSNSSSSDLIFSQLTSLSDHFKSLL 570
Query: 446 KDEAKLNEKLAELISLATCDKKLSDSKRFKSFV-TP-----EIKEILARTDARVNS 495
+ + ++ T + + ++ + +P EIKEI + +N+
Sbjct: 571 PKQFSITNPEENKLTTTTTTTTTTITNPIETIIDSPLLTEKEIKEIHSLDSIEINT 626
Score = 94 (38.1 bits), Expect = 9.7e-56, Sum P(3) = 9.7e-56
Identities = 26/115 (22%), Positives = 57/115 (49%)
Query: 44 NESTLNLTDVQGLVTWVLADGIMPS--WVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTL 101
N + + D+Q + W++ +P+ W+F PLI+KVV++ + G+ + ++ + L
Sbjct: 126 NRNNCTIKDIQDYIVWLMLRFKVPTPNWIFTAMSPLIKKVVVVSIQGISSLMH-DKLSLL 184
Query: 102 AG----FKECCD-KPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQP 151
+G F + + K + L + ++ + TCK++ K + + M K +P
Sbjct: 185 SGKDHLFSQVFEAKNKVELQFPNYNHIFESLLNVKTCKVQ-KIDTCEKMRKEIEP 238
Score = 60 (26.2 bits), Expect = 9.7e-56, Sum P(3) = 9.7e-56
Identities = 18/90 (20%), Positives = 43/90 (47%)
Query: 465 DKKLSDSKRFKSF-VTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLRE 523
+K++ + S + +K+I+ + + ++ ++Y L N+ML++ G G L +
Sbjct: 610 EKEIKEIHSLDSIEINTTVKQIVRQMELQIKNVYDKLQENSMLLLILGPGP------LND 663
Query: 524 MLREQSKNSMSRKMIVKVLEELQAQAEVAL 553
++R Q + + + V + A +AL
Sbjct: 664 IIRFQGDGNKQKDYYLSVDTAKEGVAFLAL 693
>POMBASE|SPAC637.09 [details] [associations]
symbol:SPAC637.09 "ribonuclease H70 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO] [GO:0034415 "tRNA 3'-trailer cleavage,
exonucleolytic" evidence=ISO] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=ISO] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 PomBase:SPAC637.09 Pfam:PF00929 GO:GO:0005634
EMBL:CU329670 GO:GO:0003676 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000467 GO:GO:0034476
OrthoDB:EOG4MKRQF GO:GO:0034415 PIR:T39001 RefSeq:NP_594627.2
STRING:O94443 EnsemblFungi:SPAC637.09.1 GeneID:2543505
HOGENOM:HOG000165759 NextBio:20804515 Uniprot:O94443
Length = 631
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 171/518 (33%), Positives = 252/518 (48%)
Query: 45 ESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGF 104
+ L ++D+Q LV W LADG PSWV ++NK +I + V+L VPGL+ + + Q + G
Sbjct: 97 QKPLKISDLQELVFWCLADGQAPSWVLVRNKQMIHRAVILLVPGLEPSQFGFQP--VRGN 154
Query: 105 KECCDKPRALLALSC--LSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSE 162
K P L L D D + R V S + S N +
Sbjct: 155 KHSFLLPNLLNENGPIQLPDFCEVFDRAWPTRSPGDRFRVFSPVNAFLQSPLSN-EQKKK 213
Query: 163 NSSSAELLKDIPFPITYYTLTEKQLEDNNYCY---------NQP-GFLSTVPAPFGSSPY 212
+ P Y E +ED + QP G++++ F S P
Sbjct: 214 RDKETRAMASFSKPSDYLMSYESFIEDEYPLHPTVMKGEEVTQPSGWVASA-GDFHSPPI 272
Query: 213 --EILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
+ILA+DCEM T GLE+ RVT+VD+K +V+ D+ VKP + + DY T+YSGIT E L
Sbjct: 273 NPKILAIDCEMVRTENGLEIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKLR 332
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTS 330
VTT L D+Q K V T+L+GHSL +DL LK +H +IDTA +Y H +G K S
Sbjct: 333 NVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPS 392
Query: 331 LRVLAKKFLSREIQQSG-FGHDSTEDARAAMELALLKIRNVMRTKLLKVLFE--YGKTST 387
L+ LA K+L REIQ++G GHDS EDA A ++L LK++N L FE + + S
Sbjct: 393 LKWLATKWLRREIQKAGALGHDSAEDALACVDLLKLKVKNGPAFGLFNQDFESIFHRLSR 452
Query: 388 LIDN--VSIIKRYASESS------H-AIPVSSDDEVLSKARKEVKNDRIHFVWTQFSELN 438
+ I Y + S H ++ ++DDEV+S +D +FVW +F EL
Sbjct: 453 QQPTPLIGAIADYGNPESCIGKAAHKSVSCANDDEVVSAVVS--LSDMHNFVWGRFRELE 510
Query: 439 LHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYT 498
H A A N K T + + + + VT L R + R+ LY
Sbjct: 511 -H---AAMWNANRNTKQENNSDTDTENDSVEEDQ-----VT-SYSSALERFNRRIRLLYD 560
Query: 499 ALPTNTMLIICTGHGDTAIVHRLREMLREQSKNSMSRK 536
+LP ++L++ TG G+ + +L + ++ K ++K
Sbjct: 561 SLPKGSLLLLYTGTGNPIEMSKLNAIRQQFRKEYQTKK 598
>SGD|S000003508 [details] [associations]
symbol:RNH70 "3'-5' exoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0034415 "tRNA 3'-trailer cleavage, exonucleolytic"
evidence=IGI;IMP] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IGI] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IGI] [GO:0002107
"generation of mature 3'-end of 5S rRNA generated by RNA polymerase
III" evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 SGD:S000003508 Pfam:PF00929
GO:GO:0005634 EMBL:BK006941 GO:GO:0003723 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0000175 EMBL:Z73062
GO:GO:0000467 EMBL:X84098 KO:K14570 GO:GO:0034476
GeneTree:ENSGT00630000089807 EMBL:Z73061 PIR:S64609
RefSeq:NP_011792.1 ProteinModelPortal:P53331 SMR:P53331
DIP:DIP-5564N IntAct:P53331 MINT:MINT-551078 STRING:P53331
PaxDb:P53331 PeptideAtlas:P53331 EnsemblFungi:YGR276C GeneID:853193
KEGG:sce:YGR276C CYGD:YGR276c HOGENOM:HOG000065977
OrthoDB:EOG4MKRQF NextBio:973350 Genevestigator:P53331
GermOnline:YGR276C GO:GO:0002107 GO:GO:0034415 Uniprot:P53331
Length = 553
Score = 473 (171.6 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 130/397 (32%), Positives = 205/397 (51%)
Query: 45 ESTLNLTDVQGLVTWVL-ADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAG 103
E + + DV+ + ++L A+ P W+ I N+ +QK+++L++PGL + + T
Sbjct: 62 EKGIGIKDVRDMTQYLLQAENNSPKWIDICNRSSLQKMIVLFIPGLQPDDFENGKNT--- 118
Query: 104 FKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSEN 163
F E D + ++ T T + + +S + S+ E + + E
Sbjct: 119 FNEISDDNFKYIPGE-IASTFHTFPVMAPGSKMTLFSPYNSFI-NVGLSKMEKINKLKE- 175
Query: 164 SSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQ------PGFLSTVPAPFGSSPYEILAL 217
L K I L+E+QL N+Y + ++ TV G S I AL
Sbjct: 176 -----LQKKKKITINDLVLSEQQLVANDYPLDSGDTNFDTDWVQTVDFTHGGS--HIFAL 228
Query: 218 DCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS-GVTTSL 276
DCEMC + +GL LTR++LV+ +V+ ++LVKP IVDY TRYSGIT E L+ G +L
Sbjct: 229 DCEMCLSEQGLVLTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLTVGAKKTL 288
Query: 277 KDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAK 336
+++Q++ LK++ + IL+GHSL+NDL +K+ H LV+DTA++Y H G K SL+ L++
Sbjct: 289 REVQKDLLKIISRSDILIGHSLQNDLKVMKLKHPLVVDTAIIYHHKAGDPFKPSLKYLSE 348
Query: 337 KFLSREIQQSGFGHDSTEDARAAMELALLKIRNVM------RTKLLKVLFEYGKTSTLID 390
FL++ IQ HDS EDARA +EL LKI N + T+ L + T++
Sbjct: 349 TFLNKSIQNGE--HDSVEDARACLELTKLKILNGLAFGIGINTENLFTKLHRFEVKTVLL 406
Query: 391 NVSIIKRYASESSHA--IPVSSDDEVLSKARKEVKND 425
N IIK + + S I DDE + + + D
Sbjct: 407 NDMIIKNHTEDDSKGQLIRCVEDDETWTHIHENLNKD 443
Score = 48 (22.0 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 26/106 (24%), Positives = 44/106 (41%)
Query: 410 SDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLS 469
++D+ + + V++D WT E NL+ KD + ++ L +KK
Sbjct: 415 TEDDSKGQLIRCVEDDE---TWTHIHE-NLN-----KDVKLIVGRIKNLERSRNYNKK-- 463
Query: 470 DSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDT 515
K SF + +L + LY TM++I +G GDT
Sbjct: 464 PRKETPSF---DASMVLHDIGQHLTQLYENATPGTMILIMSGTGDT 506
>UNIPROTKB|F1P0Z1 [details] [associations]
symbol:REXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 OMA:VAYDRSP EMBL:AADN02066720
IPI:IPI00599868 Ensembl:ENSGALT00000001557 Uniprot:F1P0Z1
Length = 1217
Score = 427 (155.4 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 86/178 (48%), Positives = 118/178 (66%)
Query: 198 GFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
GF+ T + Y I ALDCEMCYT +GLELTRVT+++ +V+ D VKP +VD
Sbjct: 1039 GFVKTFEKLPTTDGYPGIFALDCEMCYTKQGLELTRVTVINSDLKVVYDTFVKPDTKVVD 1098
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNTR+SG+T E L + +L+D+Q L + +TIL+GHSLE+DL ALK+ HG V+DTA
Sbjct: 1099 YNTRFSGVTEEDLENTSITLRDVQAVLLNMFSADTILIGHSLESDLFALKLIHGTVVDTA 1158
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTK 374
+++ H G +K +LR L +L R IQ + GHDS+EDARA MEL + KI+ + K
Sbjct: 1159 IVFPHRLGLPYKRALRTLMADYLKRIIQDNVEGHDSSEDARACMELMIWKIKEDSKVK 1216
Score = 45 (20.9 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
Y +TE+QL++N Y P
Sbjct: 928 YLMTEEQLKENGYPMPHP 945
Score = 42 (19.8 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 118 SCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPF 175
S L D DG + + N K ++ S+ + S+ S++ + L KD+ F
Sbjct: 547 STLPDVSSDSDGDSSGSDSQSENGKTKRAKRSKLSKSSSSSSTSDDIDYSILEKDLDF 604
Score = 39 (18.8 bits), Expect = 6.1e-40, Sum P(2) = 6.1e-40
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 143 DSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLE 188
DS +++ + + + S +S++SSS+ DI Y++ EK L+
Sbjct: 564 DSQSENGKTKRAKR-SKLSKSSSSSSTSDDID-----YSILEKDLD 603
>UNIPROTKB|F1SDH3 [details] [associations]
symbol:LOC100525449 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 KO:K14570
GeneTree:ENSGT00630000089807 OMA:VAYDRSP EMBL:FP236669
EMBL:FP102751 RefSeq:XP_003123050.1 RefSeq:XP_003123064.2
UniGene:Ssc.70280 Ensembl:ENSSSCT00000014685
Ensembl:ENSSSCT00000014691 GeneID:100513338 GeneID:100525449
KEGG:ssc:100513338 KEGG:ssc:100525449 Uniprot:F1SDH3
Length = 1211
Score = 415 (151.1 bits), Expect = 4.8e-42, Sum P(3) = 4.8e-42
Identities = 88/178 (49%), Positives = 114/178 (64%)
Query: 198 GFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
GF+ T + I ALDCEM YT GLELTRVT+VD QV+ D V+P N IVD
Sbjct: 1033 GFVKTFEKELSGDAHPGIYALDCEMSYTTYGLELTRVTVVDTDLQVVYDTFVRPDNEIVD 1092
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNTR+SG+T L+ + SL+D+Q L + +TIL+GHSLE+DLLALK+ H V+DT+
Sbjct: 1093 YNTRFSGVTEADLADTSISLRDVQAVLLSMFSSDTILIGHSLESDLLALKVIHSTVVDTS 1152
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTK 374
VL+ H G +K SLR L +L + IQ + GH S+EDA A M L + KIR +TK
Sbjct: 1153 VLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIREDAKTK 1210
Score = 49 (22.3 bits), Expect = 4.8e-42, Sum P(3) = 4.8e-42
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
Y LTE QL++N Y + P
Sbjct: 922 YLLTEDQLKENGYPFPHP 939
Score = 45 (20.9 bits), Expect = 4.8e-42, Sum P(3) = 4.8e-42
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 151 PSQKENCSTVSENSSSAELLKDIPFP 176
P QK S +S+ S AE ++ P P
Sbjct: 652 PGQKRRISHLSKQSKGAEPMRRGPVP 677
>UNIPROTKB|E2QX02 [details] [associations]
symbol:REXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 OMA:VAYDRSP EMBL:AAEX03012623
EMBL:AAEX03012624 Ensembl:ENSCAFT00000030942 Uniprot:E2QX02
Length = 1208
Score = 420 (152.9 bits), Expect = 9.3e-42, Sum P(3) = 9.3e-42
Identities = 89/181 (49%), Positives = 115/181 (63%)
Query: 195 NQPGFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNA 253
N GF+ T + I ALDCEM YT GLELTRVT+VD QV+ D VKP N
Sbjct: 1027 NLEGFVKTFDKELSEDAHPGIYALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNE 1086
Query: 254 IVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVI 313
IVDYNTR+SG+T L+ + SL+D+Q L + +T+L+GHSLE+DLLALK+ H V+
Sbjct: 1087 IVDYNTRFSGVTEADLADTSISLRDVQAVLLSMFSADTVLIGHSLESDLLALKVIHSTVV 1146
Query: 314 DTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRT 373
DT+VL+ H G +K SLR L +L + IQ + GH S+EDA A M L + KIR +T
Sbjct: 1147 DTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIREDAKT 1206
Query: 374 K 374
K
Sbjct: 1207 K 1207
Score = 49 (22.3 bits), Expect = 9.3e-42, Sum P(3) = 9.3e-42
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
Y LTE QL++N Y + P
Sbjct: 919 YLLTEDQLKENGYPFPHP 936
Score = 37 (18.1 bits), Expect = 9.3e-42, Sum P(3) = 9.3e-42
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 151 PSQKENCSTVSENSSSAELLKDIPFP 176
P QK S +S+ A+ ++ P P
Sbjct: 645 PGQKRRISHLSKQGKEADPVRKGPAP 670
Score = 37 (18.1 bits), Expect = 9.3e-42, Sum P(3) = 9.3e-42
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 134 KLKRKRNAVDSMTKS-TQPSQKENCSTVSENSSSAELLKDIPF 175
+LK A + T + PS + S SE+ + L K++ F
Sbjct: 554 RLKAPPPAQPAPTPAPASPSSSSSSSEASESVDYSALEKEVDF 596
>UNIPROTKB|A0PJM3 [details] [associations]
symbol:REXO1L2P "Putative exonuclease GOR-like protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AF279874 IPI:IPI00937866
UniGene:Hs.535056 ProteinModelPortal:A0PJM3 SMR:A0PJM3 PRIDE:A0PJM3
UCSC:uc010mgi.2 GeneCards:GC08M086790 HGNC:HGNC:32239
neXtProt:NX_A0PJM3 HOGENOM:HOG000112759 HOVERGEN:HBG107960
InParanoid:A0PJM3 OrthoDB:EOG4PZJ5X ArrayExpress:A0PJM3
Genevestigator:A0PJM3 Uniprot:A0PJM3
Length = 583
Score = 416 (151.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 86/172 (50%), Positives = 113/172 (65%)
Query: 198 GFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
GF+ T Y I ALDCEMCYT GLELTRVT+VD +V+ D VKP N IVD
Sbjct: 392 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 451
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNTR+SG+T ++ + +L +Q L +TIL+GHSLE+DLLALK+ H V+DTA
Sbjct: 452 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 511
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
VL+ H G +K SLR LA +L++ IQ S GH+S+EDA A ++L + K+R
Sbjct: 512 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVR 563
Score = 42 (19.8 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
+ LT+ QL++N Y + P
Sbjct: 281 FLLTQDQLKENGYPFPHP 298
>UNIPROTKB|G4MYV4 [details] [associations]
symbol:MGG_15523 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:CM001232
RefSeq:XP_003713422.1 ProteinModelPortal:G4MYV4
EnsemblFungi:MGG_15523T0 GeneID:12987077 KEGG:mgr:MGG_15523
Uniprot:G4MYV4
Length = 720
Score = 382 (139.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 103/257 (40%), Positives = 150/257 (58%)
Query: 213 EILALDCEMCYT---NEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEML 269
EI A+DCEMC T N L LTRVT++ G+V++D+LVKPS I+DY T++SGIT EML
Sbjct: 312 EIFAIDCEMCRTGPTNHDLSLTRVTILSWDGEVVMDELVKPSLPILDYLTQFSGITKEML 371
Query: 270 SGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKT 329
VTT+L DIQ+ L+L+ +ILVGHSL++D+ AL+++H V+DT++L+ +P + K
Sbjct: 372 EPVTTTLPDIQKRLLELLTPRSILVGHSLDSDMKALQMAHPFVVDTSILFPNPSSPNGKH 431
Query: 330 SLRVLAKKFLSREIQQS-GF--GHDSTEDARAAMELALLKIRNVMRTKLLKVLFEYGKTS 386
SL+ LA K+L R++Q+ G GHDS EDA A++L K + K E+G +
Sbjct: 432 SLKHLASKYLGRQVQKDEGSLKGHDSYEDALTALDLVKKKCE---KGK------EWGVSG 482
Query: 387 TLIDNV-SIIKRYASESSHAIPVSSDDEV---LSKARKEVKNDRIHFVWTQFSELNLHF- 441
DN SI KR A + A E ++ + D W Q+S+ + HF
Sbjct: 483 ---DNKESIFKRLARAGT-AYRAQGGPEAKGGVATGKSSAAVDWGELGWNQYSDAD-HFI 537
Query: 442 --KKQAKDEAKLNEKLA 456
K A+ EA + +A
Sbjct: 538 PCKSDAEVEAGIIRAVA 554
Score = 118 (46.6 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 45 ESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALY 94
+S + +TD++ L+ ++ ADG P WV + ++P K+V + +PGL+ A++
Sbjct: 92 QSKIQVTDLRNLILYIFADGTAPQWVAVSHRPQFTKIVTILIPGLEEAMF 141
Score = 78 (32.5 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 29/112 (25%), Positives = 51/112 (45%)
Query: 420 KEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLS-----DSKR- 473
KE+K + FVW + EL ++ ++ N + KLS ++K
Sbjct: 560 KEIKGGGVDFVWARMRELEALRGWWNRNRSQSNSNGPPTVDELGRRMKLSIVAGEENKGP 619
Query: 474 FKSFVTPE--IKEI-LARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLR 522
++ +T E + E+ +A R+ +Y ALP L++ +G GD + RLR
Sbjct: 620 IEAAMTDERCLLEVAVATVTQRIGRIYAALPPCAALVVFSGTGDPREMERLR 671
Score = 68 (29.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 383 GKTSTLIDNVSIIKRYASESSHAIPVSSDDEV---LSKA------RKEVKNDRIHFVWTQ 433
GK+S +D + S++ H IP SD EV + +A KE+K + FVW +
Sbjct: 514 GKSSAAVDWGELGWNQYSDADHFIPCKSDAEVEAGIIRAVAGDVDGKEIKGGGVDFVWAR 573
Query: 434 FSEL 437
EL
Sbjct: 574 MREL 577
Score = 39 (18.8 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 137 RKRNAVDSMTKSTQPSQKENCSTV--SENSSSAEL 169
R+R + S + S +P N T ++ SS A +
Sbjct: 18 RQRESAPSASGSKRPRSSSNADTAKPADGSSRASM 52
>FB|FBgn0039544 [details] [associations]
symbol:CG12877 species:7227 "Drosophila melanogaster"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:AE014297 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 GeneTree:ENSGT00630000089807 EMBL:BT133134
RefSeq:NP_001034073.1 UniGene:Dm.14943 SMR:Q2PDP6
EnsemblMetazoa:FBtr0100446 GeneID:43333 KEGG:dme:Dmel_CG12877
UCSC:CG12877-RC FlyBase:FBgn0039544 OMA:GGWETSY OrthoDB:EOG4FTTFN
GenomeRNAi:43333 NextBio:833402 Uniprot:Q2PDP6
Length = 991
Score = 429 (156.1 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 86/173 (49%), Positives = 116/173 (67%)
Query: 199 FLSTVPA--PFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
F+ T+ F + +I ALDCEMCYT G+ELTRVT+VDI G+ + D LVKP N IVD
Sbjct: 816 FVKTIERGEEFVPTKKDIYALDCEMCYTTHGIELTRVTVVDINGRSVYDALVKPDNQIVD 875
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNT YSGIT MLS T +++D+Q + + + +T+LVGHSLE+DL ALK+ H +V+DT+
Sbjct: 876 YNTTYSGITEAMLSNETRTIRDVQAVLMSMFHAKTVLVGHSLESDLKALKLIHDVVVDTS 935
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369
VL+ H G K +L+ L + L R IQ+S GHDS EDA ++L +RN
Sbjct: 936 VLFPHKMGPPKKRALKTLCIENLKRIIQESEAGHDSAEDAEVCIQLIKYYLRN 988
Score = 49 (22.3 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 30/132 (22%), Positives = 55/132 (41%)
Query: 77 LIQKVVMLYVPGLDAALYLSQSKTLAGFKECCD----KPRALLALSCLSDTMLTIDGL-- 130
+++ ++Y P L A +Q + L FK+C K +LA++ L L
Sbjct: 595 MVRHCTVIY-PQLADAWERAQVEELTVFKKCNTPAIYKNSCMLAINKLRKEALEAGNKPS 653
Query: 131 LTCKLKRKRNAVD---SMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITY-YTLTEKQ 186
+ CK + ++T S +K S++ L + + + + LTE+Q
Sbjct: 654 VACKTVSHEMMLGGKRALTTSWSVEKKGKLSSLGNGEPFDALDAEKAYKMVFDLRLTEEQ 713
Query: 187 LEDNNYCYNQPG 198
L +N Y +PG
Sbjct: 714 LVENGY--PRPG 723
>UNIPROTKB|F5GW92 [details] [associations]
symbol:REXO1L10P "Protein REXO1L10P" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 IPI:IPI00937866
HGNC:HGNC:32239 KO:K14570 EMBL:AC232323 RefSeq:XP_002342903.1
Ensembl:ENST00000425429 Ensembl:ENST00000540724 GeneID:100288562
KEGG:hsa:100288562 OMA:VIHCTVV NextBio:20778309 Uniprot:F5GW92
Length = 675
Score = 416 (151.5 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 86/172 (50%), Positives = 113/172 (65%)
Query: 198 GFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
GF+ T Y I ALDCEMCYT GLELTRVT+VD +V+ D VKP N IVD
Sbjct: 484 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 543
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNTR+SG+T ++ + +L +Q L +TIL+GHSLE+DLLALK+ H V+DTA
Sbjct: 544 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 603
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
VL+ H G +K SLR LA +L++ IQ S GH+S+EDA A ++L + K+R
Sbjct: 604 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVR 655
Score = 42 (19.8 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
+ LT+ QL++N Y + P
Sbjct: 373 FLLTQDQLKENGYPFPHP 390
>UNIPROTKB|Q8IX06 [details] [associations]
symbol:REXO1L1 "Exonuclease GOR" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
HOGENOM:HOG000112759 HOVERGEN:HBG107960 OrthoDB:EOG4PZJ5X
EMBL:AC093331 EMBL:AF495523 EMBL:AF023669 IPI:IPI00892939
RefSeq:NP_758439.4 UniGene:Hs.373854 ProteinModelPortal:Q8IX06
SMR:Q8IX06 STRING:Q8IX06 PhosphoSite:Q8IX06 DMDM:205831276
PaxDb:Q8IX06 PRIDE:Q8IX06 DNASU:254958 Ensembl:ENST00000379010
GeneID:254958 KEGG:hsa:254958 UCSC:uc022axf.1 CTD:254958
GeneCards:GC08M086568 H-InvDB:HIX0034285 H-InvDB:HIX0168820
H-InvDB:HIX0188684 H-InvDB:HIX0188686 H-InvDB:HIX0188687
H-InvDB:HIX0188688 H-InvDB:HIX0188689 H-InvDB:HIX0188690
HGNC:HGNC:24660 neXtProt:NX_Q8IX06 PharmGKB:PA142671078
InParanoid:Q8IX06 KO:K14570 OMA:RIARIPM GenomeRNAi:254958
NextBio:92431 Bgee:Q8IX06 CleanEx:HS_REXO1L1 Genevestigator:Q8IX06
Uniprot:Q8IX06
Length = 675
Score = 415 (151.1 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 86/172 (50%), Positives = 113/172 (65%)
Query: 198 GFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
GF+ T Y I ALDCEMCYT GLELTRVT+VD +V+ D VKP N IVD
Sbjct: 484 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 543
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNTR+SG+T ++ + +L +Q L +TIL+GHSLE+DLLALK+ H V+DTA
Sbjct: 544 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 603
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
VL+ H G +K SLR LA +L++ IQ S GH+S+EDA A ++L + K+R
Sbjct: 604 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVR 655
Score = 42 (19.8 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
+ LT+ QL++N Y + P
Sbjct: 373 FLLTQDQLKENGYPFPHP 390
>UNIPROTKB|Q2T9U5 [details] [associations]
symbol:Q2T9U5 "Putative RNA exonuclease NEF-sp"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 GeneTree:ENSGT00630000089807 EMBL:BC111262
IPI:IPI00691015 RefSeq:NP_001033243.1 UniGene:Bt.53153
ProteinModelPortal:Q2T9U5 PRIDE:Q2T9U5 Ensembl:ENSBTAT00000008458
GeneID:532864 KEGG:bta:532864 HOGENOM:HOG000015091
HOVERGEN:HBG101031 InParanoid:Q2T9U5 OMA:KMIHPYV NextBio:20875829
ArrayExpress:Q2T9U5 Uniprot:Q2T9U5
Length = 783
Score = 404 (147.3 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 119/329 (36%), Positives = 177/329 (53%)
Query: 67 PSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLT 126
PSW + ++ ++ VV+ + GL + L+ + GF K + + SD +
Sbjct: 84 PSWCQLFHQNHLKNVVVFILQGL-SQLHFYKFYLEFGFLRKAFKHKFRMPPPS-SDFLAD 141
Query: 127 IDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFP---ITYYTLT 183
I GL +K+ + ++ K+ + S S VS N +++ F +T LT
Sbjct: 142 IIGL------QKKQIIGNLPKAMEGSLPFASSKVSINLQKDPIIQKYGFKKVGLTRCLLT 195
Query: 184 EKQLEDNNYCYNQPGFLST---VPAPFGSSPYE---ILALDCEMCYTNEGLELTRVTLVD 237
+++++ Y + GFL VP S + + LDCEMC T++G ELTR++LV
Sbjct: 196 KEEMK--TYHFPLQGFLDCENFVPTKCNGSVTDNSPLFGLDCEMCLTSKGRELTRISLVA 253
Query: 238 IKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHS 297
G ++D+LVKP N IVDY T +SGIT ++L+ VTT LKD+Q L+ + +LVGHS
Sbjct: 254 EGGGCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRRLKILLPPDAVLVGHS 313
Query: 298 LENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-QSGFGHDSTEDA 356
L+ DL ALK+ H VIDT++LY QG K L+ LAK L ++IQ GHD+TEDA
Sbjct: 314 LDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKFLAKAILGKDIQCPDRLGHDATEDA 371
Query: 357 RAAMELA--LLKIRNVMRTKL-LKVLFEY 382
R +ELA LK +L L+ LF Y
Sbjct: 372 RTTLELARYFLKYGPKKIAELNLEALFSY 400
Score = 55 (24.4 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 28/123 (22%), Positives = 48/123 (39%)
Query: 371 MRTKLLKVLFEYG-KTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHF 429
+ T +L+ L G K L +S++ I S+ EVL +AR E+
Sbjct: 416 LNTSVLECLDSVGQKLLFLTQEADASALSSSKNCQTIKCLSNKEVLEQARVEIPLFPFSI 475
Query: 430 VWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKK--LSDSKR-FKSFVTPEIKEIL 486
V F + + ++ K+ + +K LS KR FKSF ++ ++
Sbjct: 476 VQFSFEPFSPNLTQEMNKRIKIKWTEMSTVYAGPFNKNCNLSALKRLFKSFGPVQLMTLV 535
Query: 487 ART 489
T
Sbjct: 536 LET 538
>MGI|MGI:1914182 [details] [associations]
symbol:Rexo1 "REX1, RNA exonuclease 1 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 MGI:MGI:1914182
GO:GO:0005634 GO:GO:0003676 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 OrthoDB:EOG4PZJ5X
KO:K14570 GeneTree:ENSGT00630000089807 CTD:57455
HOGENOM:HOG000039979 HOVERGEN:HBG090644 OMA:VAYDRSP EMBL:AK173108
EMBL:AK006228 EMBL:AK144769 EMBL:BC039623 EMBL:BC052424
EMBL:BC069964 IPI:IPI00469996 IPI:IPI00759993 RefSeq:NP_080128.2
UniGene:Mm.1116 ProteinModelPortal:Q7TT28 SMR:Q7TT28 IntAct:Q7TT28
PhosphoSite:Q7TT28 PRIDE:Q7TT28 Ensembl:ENSMUST00000057910
GeneID:66932 KEGG:mmu:66932 UCSC:uc007gdq.1 UCSC:uc007gds.1
InParanoid:Q7TT28 NextBio:323057 Bgee:Q7TT28 CleanEx:MM_REXO1
Genevestigator:Q7TT28 GermOnline:ENSMUSG00000047417 Uniprot:Q7TT28
Length = 1213
Score = 417 (151.9 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 88/181 (48%), Positives = 115/181 (63%)
Query: 195 NQPGFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNA 253
N GF+ T + + ALDCEM YT GLELTRVT+VD QV+ D VKP N
Sbjct: 1032 NLEGFVRTFQKELPEDAHAGVFALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNE 1091
Query: 254 IVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVI 313
+VDYNTR+SG+T L + +L+D+Q L + +TIL+GHSLE+DLLALK+ HG V+
Sbjct: 1092 VVDYNTRFSGVTEADLVDTSITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVV 1151
Query: 314 DTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRT 373
DT+VL+ H G +K SLR L +L + IQ + GH S+EDA A M L + KIR +T
Sbjct: 1152 DTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIREDAKT 1211
Query: 374 K 374
K
Sbjct: 1212 K 1212
Score = 48 (22.0 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
Y LT++QL++N Y + P
Sbjct: 924 YLLTQEQLKENGYPFPHP 941
>UNIPROTKB|F1N3K9 [details] [associations]
symbol:LOC100335177 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 EMBL:DAAA02022135 EMBL:DAAA02022136
IPI:IPI00687563 Ensembl:ENSBTAT00000048722 OMA:FAVNCEV
Uniprot:F1N3K9
Length = 387
Score = 387 (141.3 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 82/188 (43%), Positives = 116/188 (61%)
Query: 190 NNYCYNQPGFLSTV---PAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDK 246
+N N GF+ T+ PA +P + A+ CE CYT +GLE TRVT+VD QV+ D
Sbjct: 201 HNQKENLGGFVKTLVKFPA-LDRNPC-VFAMSCEACYTAKGLEPTRVTVVDPSLQVVYDT 258
Query: 247 LVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK 306
VKP ++DYNTR+SG+ + L + TS++D+Q L L +TIL+GHS E+ L ALK
Sbjct: 259 FVKPDEEVIDYNTRFSGVAEDDLKNMKTSVRDVQAILLNLFSADTILIGHSFEHSLYALK 318
Query: 307 ISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLK 366
+ H ++DT VL+ HP G H+ SL+ L +L R IQ GH S+E+A A MEL L K
Sbjct: 319 LIHTSIVDTTVLFPHPLGLPHRRSLKGLVADYLQRVIQDEVGGHSSSENATACMELVLWK 378
Query: 367 IRNVMRTK 374
+ + ++ K
Sbjct: 379 VNDDLKGK 386
Score = 52 (23.4 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
Y LTE+QL +NNY P
Sbjct: 99 YLLTEEQLRENNYPQPNP 116
>ZFIN|ZDB-GENE-030131-1650 [details] [associations]
symbol:rexo1 "REX1, RNA exonuclease 1 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
ZFIN:ZDB-GENE-030131-1650 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 KO:K14570
GeneTree:ENSGT00630000089807 CTD:57455 HOGENOM:HOG000039979
HOVERGEN:HBG090644 OMA:GGWETSY EMBL:BX511253 IPI:IPI00896271
RefSeq:NP_001119888.1 UniGene:Dr.64589 Ensembl:ENSDART00000079618
GeneID:564551 KEGG:dre:564551 NextBio:20885442 Uniprot:B0S6F3
Length = 1207
Score = 424 (154.3 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 85/179 (47%), Positives = 121/179 (67%)
Query: 198 GFLSTV--PAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIV 255
GF+ T P P + + ALDCEMCYT +GLELTRVT+++ + +V+ D VKP + +V
Sbjct: 1029 GFVKTFSKPLPVDGNA-GVYALDCEMCYTKQGLELTRVTVINSELKVVYDTFVKPGSRVV 1087
Query: 256 DYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDT 315
DYNTR+SG+T + L T SL+D+Q L + ++IL+GHSLE+DL ALK+ H +V+DT
Sbjct: 1088 DYNTRFSGVTADDLENTTISLRDVQAVLLSMFSADSILIGHSLESDLFALKLIHSMVVDT 1147
Query: 316 AVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTK 374
A+++ H G +K +LR L +L R IQ + GHDS+EDARA MEL + KI+ + K
Sbjct: 1148 AIVFPHRLGLPYKRALRNLMADYLKRIIQDNVGGHDSSEDARACMELMIWKIKEDAKVK 1206
Score = 37 (18.1 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 95 LSQSKTLAGFKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKR-NAVDSMTKSTQPSQ 153
L +S + K+ K A + C SD + D T K K+ +A + T T +
Sbjct: 312 LPKSSAMGQQKKQISKTDAYFS-PCESDDTESQDVNRTNKKTDKKVSASQTKTNKTDKVK 370
Query: 154 KEN 156
KEN
Sbjct: 371 KEN 373
>RGD|1564472 [details] [associations]
symbol:RGD1564472 "similar to Transcription elongation factor B
polypeptide 3 binding protein 1" species:10116 "Rattus norvegicus"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 RGD:1564472 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
IPI:IPI00767432 Ensembl:ENSRNOT00000049320 Uniprot:F1LWS9
Length = 465
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 93/200 (46%), Positives = 117/200 (58%)
Query: 174 PFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRV 233
P T + ++ ++D N GF T P + I ALDCEM YT GLELTRV
Sbjct: 265 PMGATGCKVAKQHVQDGRKD-NLHGFAKTFPKKDWEAHAGIYALDCEMSYTTHGLELTRV 323
Query: 234 TLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETIL 293
T+VD V+ D VKP N IVDYNT +SG+T L+ L D+Q L L ETIL
Sbjct: 324 TVVDTDQHVIYDTFVKPDNEIVDYNTMFSGVTETDLANTRVRLCDVQAVLLSLFSTETIL 383
Query: 294 VGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDST 353
+GHSLE+DLLALK HG V+DT+VL+ H +G K SLR L ++L+R IQ GH S
Sbjct: 384 IGHSLESDLLALKFIHGTVVDTSVLFPHHRGPPFKRSLRGLTSQYLNRIIQTDSGGHSSI 443
Query: 354 EDARAAMELALLKIRNVMRT 373
EDA A M+L KI+ +T
Sbjct: 444 EDATACMQLVTWKIQEDAKT 463
>CGD|CAL0006149 [details] [associations]
symbol:orf19.6195 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IEA] [GO:0034415 "tRNA 3'-trailer cleavage,
exonucleolytic" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0002107 "generation of mature 3'-end of 5S rRNA generated by
RNA polymerase III" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 CGD:CAL0006149 Pfam:PF00929
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AACQ01000038
EMBL:AACQ01000037 KO:K14570 RefSeq:XP_718702.1 RefSeq:XP_718786.1
ProteinModelPortal:Q5AAW5 GeneID:3639488 GeneID:3639626
KEGG:cal:CaO19.13575 KEGG:cal:CaO19.6195 Uniprot:Q5AAW5
Length = 744
Score = 422 (153.6 bits), Expect = 7.2e-39, P = 7.2e-39
Identities = 150/498 (30%), Positives = 234/498 (46%)
Query: 69 WVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLS--DTMLT 126
W I+N I V + VPGL L+++ G + +K + A+S L D +
Sbjct: 179 WCNIENSEKIPTVCVCLVPGLQLEENLAETAD-NGLQSSKEKSKQQCAISNLKRIDQLSF 237
Query: 127 IDGLLTCKLKRKR-NAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEK 185
I T +K + DS+ S Q T +E +S K I LTE+
Sbjct: 238 IFDNFTNFIKSSSPGSKDSIFSSLQTLLNVPL-TKNEKNSLLRKSKATKITIKDLLLTEQ 296
Query: 186 QLEDNNY--------------CYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELT 231
QL+ NY YN + + + I ALDCE C LT
Sbjct: 297 QLKTYNYPTTLVDSTWKATKDLYNTDSN-NNEKSDSETRKSRIYALDCEFCKAGAKQVLT 355
Query: 232 RVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKET 291
R++L+D + +V++D+LVKP I DY T+YSGIT E+L VTT+++DIQ F+ V ++
Sbjct: 356 RISLLDFEAKVVMDELVKPKEEITDYVTKYSGITEELLRDVTTTIEDIQNLFVNTVSQQD 415
Query: 292 ILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQS---GF 348
IL+GHSLE+DL +KI H ++DT+++Y+H +G K SL+ LA+K L+R+IQ G
Sbjct: 416 ILIGHSLESDLNVMKIKHDNIVDTSIIYEHNRGPPSKPSLKSLAEKHLNRQIQAGEGQGL 475
Query: 349 GHDSTEDARAAMELALLKIRNVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPV 408
GH S EDA+A ++L LKI + KL V G+ S + +S Y + +
Sbjct: 476 GHSSIEDAKACLDLVKLKI---IEGKLFGV--NVGEVS-IFQRLSENPNY--NAGGEVNP 527
Query: 409 SSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQ------AKDEAKLNEKLAELISLA 462
SSD + K+ + + T+ ++N K D+ + + E+ S
Sbjct: 528 SSDTD----GNNTFKSLLVSYGQTREYDINPDEKYDLTKINVTNDDEAVENFVKEIHSKN 583
Query: 463 TCDKKLSDSKRFKSFVTPE--IK--------EILARTDARVNSLYTALPTNTMLIICTGH 512
L DS+ + TP K E RT+ R+ +Y +LP +++LI +
Sbjct: 584 FAVINLRDSEFNNKWNTPPDYYKGDLDYNQMESYKRTNQRLEKIYQSLPDHSLLICYSQS 643
Query: 513 GDTAIVHRLREMLREQSK 530
GD + +L+ + R K
Sbjct: 644 GDPREMFKLQGVRRNFQK 661
>UNIPROTKB|E1BDF8 [details] [associations]
symbol:LOC788506 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005634 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 KO:K14570
GeneTree:ENSGT00630000089807 CTD:57455 OMA:VAYDRSP
EMBL:DAAA02020285 IPI:IPI00700340 RefSeq:NP_001179237.1
UniGene:Bt.25942 Ensembl:ENSBTAT00000026945 GeneID:512048
KEGG:bta:512048 NextBio:20870228 Uniprot:E1BDF8
Length = 1211
Score = 408 (148.7 bits), Expect = 7.2e-39, Sum P(2) = 7.2e-39
Identities = 85/181 (46%), Positives = 114/181 (62%)
Query: 195 NQPGFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNA 253
N GF+ T + + ALDCEM YT GLELTRVT+VD QV+ D V+P N
Sbjct: 1030 NLEGFVKTFEKELSGDAHPGVYALDCEMSYTTYGLELTRVTVVDTDLQVVYDTFVRPDNE 1089
Query: 254 IVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVI 313
IVDYNTR+SG+T L+ + SL+D+Q L + +T+L+GHSLE+DLL L++ H V+
Sbjct: 1090 IVDYNTRFSGVTEADLADTSISLRDVQAVLLSMFSSDTVLIGHSLESDLLCLQVIHSTVV 1149
Query: 314 DTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRT 373
DT+VL+ H G +K SLR L +L + IQ + GH S+EDA A M L + KIR +T
Sbjct: 1150 DTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIREDAKT 1209
Query: 374 K 374
K
Sbjct: 1210 K 1210
Score = 48 (22.0 bits), Expect = 7.2e-39, Sum P(2) = 7.2e-39
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
Y LTE QL++N Y + P
Sbjct: 922 YLLTEGQLKENGYPFPHP 939
>UNIPROTKB|Q8N1G1 [details] [associations]
symbol:REXO1 "RNA exonuclease 1 homolog" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005634 GO:GO:0003676 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AC012615
OrthoDB:EOG4PZJ5X KO:K14570 EMBL:AB032964 EMBL:BC032244
IPI:IPI00297396 RefSeq:NP_065746.3 UniGene:Hs.192477
ProteinModelPortal:Q8N1G1 SMR:Q8N1G1 IntAct:Q8N1G1
MINT:MINT-1401484 STRING:Q8N1G1 PhosphoSite:Q8N1G1 DMDM:296452990
PaxDb:Q8N1G1 PRIDE:Q8N1G1 Ensembl:ENST00000170168 GeneID:57455
KEGG:hsa:57455 UCSC:uc002lua.4 CTD:57455 GeneCards:GC19M001815
H-InvDB:HIX0014594 H-InvDB:HIX0027481 HGNC:HGNC:24616 HPA:HPA042155
HPA:HPA042552 MIM:609614 neXtProt:NX_Q8N1G1 PharmGKB:PA142671077
HOGENOM:HOG000039979 HOVERGEN:HBG090644 InParanoid:Q8N1G1
OMA:VAYDRSP GenomeRNAi:57455 NextBio:63632 ArrayExpress:Q8N1G1
Bgee:Q8N1G1 CleanEx:HS_REXO1 Genevestigator:Q8N1G1
GermOnline:ENSG00000079313 Uniprot:Q8N1G1
Length = 1221
Score = 409 (149.0 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
Identities = 86/178 (48%), Positives = 113/178 (63%)
Query: 198 GFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
GF+ T + I ALDCEM YT GLELTRVT+VD V+ D VKP N IVD
Sbjct: 1043 GFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVTVVDTDVHVVYDTFVKPDNEIVD 1102
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNTR+SG+T L+ + +L+D+Q L + +TIL+GHSLE+DLLALK+ H V+DT+
Sbjct: 1103 YNTRFSGVTEADLADTSVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHSTVVDTS 1162
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTK 374
VL+ H G +K SLR L +L + IQ + GH S+EDA A M L + K+R +TK
Sbjct: 1163 VLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDAGACMHLVIWKVREDAKTK 1220
Score = 46 (21.3 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
Y LT+ QL++N Y + P
Sbjct: 932 YLLTQDQLKENGYPFPHP 949
>UNIPROTKB|F1P8U5 [details] [associations]
symbol:F1P8U5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 EMBL:AAEX03007922 OMA:FAVNCEV
Ensembl:ENSCAFT00000002678 Uniprot:F1P8U5
Length = 369
Score = 372 (136.0 bits), Expect = 4.7e-37, Sum P(2) = 4.7e-37
Identities = 79/183 (43%), Positives = 115/183 (62%)
Query: 195 NQPGFLSTV---PAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPS 251
N GF+ T P P G+ P + A++CE+CYT +GLELT+VT+VD QV+ D VKP
Sbjct: 189 NIKGFVKTFVKSPPPDGN-P-GVFAVNCEVCYTAKGLELTQVTVVDPSLQVVYDTFVKPD 246
Query: 252 NAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL 311
+ ++DYNTR SG+ + L TS++D+Q L L +T+L+GHS E+ L ALK+ H
Sbjct: 247 DEVIDYNTRLSGVVEDDLKNTKTSIRDVQAILLNLFSADTVLIGHSFEHSLYALKLIHSS 306
Query: 312 VIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVM 371
V+DT +L+ H G HK SL+ L +L R IQ ++S+E+A A MEL L K++ +
Sbjct: 307 VVDTTILFPHRLGLPHKRSLKSLVADYLQRIIQDDDH-NNSSENATACMELVLWKVKEDL 365
Query: 372 RTK 374
+ K
Sbjct: 366 KGK 368
Score = 44 (20.5 bits), Expect = 4.7e-37, Sum P(2) = 4.7e-37
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 180 YTLTEKQLEDNNYCYNQP 197
Y L+++QL +NNY P
Sbjct: 81 YLLSKEQLHENNYPQPNP 98
>UNIPROTKB|E1BR93 [details] [associations]
symbol:LOC427001 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
EMBL:AADN02064630 EMBL:AADN02064631 EMBL:AADN02064632
EMBL:AADN02064633 EMBL:AADN02064634 IPI:IPI00915205
ProteinModelPortal:E1BR93 Ensembl:ENSGALT00000039112
ArrayExpress:E1BR93 Uniprot:E1BR93
Length = 755
Score = 394 (143.8 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 107/284 (37%), Positives = 160/284 (56%)
Query: 177 ITYYTLTEKQLEDNNY-CYNQPG---FLSTVPAPFGSSPYEILALDCEMCYTNEGLELTR 232
+T YTLT ++L+ N+Y + PG ++ T + + LDCEMC T G E+ R
Sbjct: 181 LTSYTLTSEELKKNDYPMRDSPGCKGYMYTECDLQRTDSSPLFGLDCEMCLTARGNEVVR 240
Query: 233 VTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETI 292
V+LVD +GQ LL++LVKP + IV+Y TRYSG+T +ML V T L DIQ K++ + +
Sbjct: 241 VSLVDAEGQCLLNELVKPESVIVNYCTRYSGVTRKMLLPVKTRLPDIQTRLKKILPHDAV 300
Query: 293 LVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-QSGFGHD 351
LVGHSL DL AL++ H VIDT++L+ +G K L+ LAK L +EIQ + GHD
Sbjct: 301 LVGHSLNADLQALQMIHPSVIDTSLLFARNEGRRFK--LKFLAKAVLGKEIQCEQRLGHD 358
Query: 352 STEDARAAMELALLKIRN--VMRTKL-LKVLFEYGKTSTLIDNVSIIKRYASESSHAIPV 408
EDARAA+ELA I+ V +L L++L + + ++ S+++ S S A
Sbjct: 359 PAEDARAALELAQFFIKKGPVKVAELNLEMLLAAERQTEVLPKKSVMQPQRS-SFLACLQ 417
Query: 409 SSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLN 452
+ L R+E+ D F + S N ++A ++ L+
Sbjct: 418 GMGQKPLLLGRQEL--DSSGFCQSDLSASNKQILQRALEDVPLS 459
Score = 47 (21.6 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 481 EIKEILARTDARVNSLYTALPTNTMLII 508
++K+ + + D + LY +L NT+ ++
Sbjct: 699 DVKKKVKKLDHHIKKLYRSLQDNTLCVV 726
>UNIPROTKB|I3LLP7 [details] [associations]
symbol:I3LLP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
SUPFAM:SSF53098 GeneTree:ENSGT00630000089807 EMBL:CU571150
Ensembl:ENSSSCT00000025893 OMA:QKKRIAH Uniprot:I3LLP7
Length = 999
Score = 390 (142.3 bits), Expect = 7.1e-36, Sum P(2) = 7.1e-36
Identities = 84/186 (45%), Positives = 116/186 (62%)
Query: 195 NQPGFLSTV---PAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPS 251
N GF+ T P P G+ + + A++C+MCYT +GLELT VT+VD QV+ D VKP
Sbjct: 815 NLEGFVKTFVKFPPPDGN--HRVFAVNCQMCYTAKGLELTHVTVVDSSLQVVYDTFVKPD 872
Query: 252 NAIVDYNTR--YSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH 309
I+DYNTR +SG+ L TS+ D+Q L L +TIL+GHS E+ L ALK+ H
Sbjct: 873 EEIIDYNTRSRFSGVVENDLKNTKTSICDVQAILLNLFSADTILIGHSFEHSLYALKLIH 932
Query: 310 GLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFG-HDSTEDARAAMELALLKIR 368
V+DT V++ H G HK SL+ L +L R IQ GFG H+S+E+A A MEL L K++
Sbjct: 933 TSVVDTTVMFPHRLGLPHKRSLKSLVADYLQRIIQDDGFGGHNSSENATACMELVLWKVK 992
Query: 369 NVMRTK 374
+ ++ K
Sbjct: 993 DDLKGK 998
Score = 58 (25.5 bits), Expect = 7.1e-36, Sum P(2) = 7.1e-36
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 135 LKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFP-ITYYTLTEKQLEDNNYC 193
LK R+ + + + PS+K + + N L I + + Y LTE+QL +NNY
Sbjct: 662 LKMLRDQGNFFSVNEDPSKKISYVSGISNDDETMLTGIILYRHLKDYLLTEEQLHENNYP 721
Query: 194 YNQP 197
P
Sbjct: 722 QPNP 725
>UNIPROTKB|F1P5D1 [details] [associations]
symbol:LOC427001 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
EMBL:AADN02064630 EMBL:AADN02064631 EMBL:AADN02064632
EMBL:AADN02064633 EMBL:AADN02064634 IPI:IPI00601052
Ensembl:ENSGALT00000003504 ArrayExpress:F1P5D1 Uniprot:F1P5D1
Length = 773
Score = 388 (141.6 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 90/197 (45%), Positives = 124/197 (62%)
Query: 177 ITYYTLTEKQLEDNNY-CYNQPG---FLSTVPAPFGSSPYEILALDCEMCYTNEGLELTR 232
+T YTLT ++L+ N+Y + PG ++ T + + LDCEMC T G E+ R
Sbjct: 181 LTSYTLTSEELKKNDYPMRDSPGCKGYMYTECDLQRTDSSPLFGLDCEMCLTARGNEVVR 240
Query: 233 VTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETI 292
V+LVD +GQ LL++LVKP + IV+Y TRYSG+T +ML V T L DIQ K++ + +
Sbjct: 241 VSLVDAEGQCLLNELVKPESVIVNYCTRYSGVTRKMLLPVKTRLPDIQTRLKKILPHDAV 300
Query: 293 LVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-QSGFGHD 351
LVGHSL DL AL++ H VIDT++L+ +G K L+ LAK L +EIQ + GHD
Sbjct: 301 LVGHSLNADLQALQMIHPSVIDTSLLFARNEGRRFK--LKFLAKAVLGKEIQCEQRLGHD 358
Query: 352 STEDARAAMELALLKIR 368
EDARAA+ELA I+
Sbjct: 359 PAEDARAALELAQFFIK 375
Score = 47 (21.6 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 481 EIKEILARTDARVNSLYTALPTNTMLII 508
++K+ + + D + LY +L NT+ ++
Sbjct: 717 DVKKKVKKLDHHIKKLYRSLQDNTLCVV 744
>ZFIN|ZDB-GENE-061013-448 [details] [associations]
symbol:zgc:152968 "zgc:152968" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 ZFIN:ZDB-GENE-061013-448 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 EMBL:CR762466 IPI:IPI00870950
ProteinModelPortal:B8JII5 Ensembl:ENSDART00000139636
HOVERGEN:HBG106838 OMA:DPMEECY ArrayExpress:B8JII5 Bgee:B8JII5
Uniprot:B8JII5
Length = 1251
Score = 393 (143.4 bits), Expect = 4.7e-34, P = 4.7e-34
Identities = 80/178 (44%), Positives = 113/178 (63%)
Query: 198 GFLSTV-PAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
GF+S++ + G + I A+D + CYT +GLEL RVT+V QV+ D VKP N ++D
Sbjct: 1072 GFVSSLHQSAVGKTCPGIYAIDTQTCYTTQGLELARVTVVSSSLQVVFDSFVKPDNDVID 1131
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNTR+SGI+ + ++SL+D+Q L + +TIL+GH LENDL ALKI H V+DT+
Sbjct: 1132 YNTRFSGISEADVKSSSSSLRDVQAVLLSFINADTILIGHGLENDLAALKIIHSTVVDTS 1191
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTK 374
V++ H G HK L L +L R IQ+S GHD+ EDA A MEL L +++ + K
Sbjct: 1192 VVFPHRLGLPHKRELNSLTADYLRRIIQESVEGHDTREDATACMELMLWRVKEDSKVK 1249
>UNIPROTKB|E2RFH9 [details] [associations]
symbol:LOC479820 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
OMA:KMIHPYV EMBL:AAEX03004472 Ensembl:ENSCAFT00000028467
Uniprot:E2RFH9
Length = 774
Score = 383 (139.9 bits), Expect = 4.2e-33, Sum P(2) = 4.2e-33
Identities = 104/302 (34%), Positives = 161/302 (53%)
Query: 67 PSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLT 126
PSW + ++ + VV+ + G+ + L+ + GF + + L S+ +
Sbjct: 83 PSWCQLFHQNHLNNVVVFVLQGM-SQLHFYRFYLEFGFLRKAFRHKFRLPPPS-SNFLAD 140
Query: 127 IDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQ 186
I GL K K+ M + + PS +N + +T LT+++
Sbjct: 141 IIGL---KKKQATRDQSKMGEGSLPSTSSKVRVNLQNDPIIQKYGSKKVCLTRCLLTKEE 197
Query: 187 LEDNNY-CYNQPGFLSTVPAPFGSSPYE---ILALDCEMCYTNEGLELTRVTLVDIKGQV 242
++ ++ P + VP S + + LDCEMC T++G ELTR++LV G
Sbjct: 198 MKTFHFPLQGCPDCANFVPTKCNGSITDNSPLFGLDCEMCVTSKGRELTRISLVAEGGSC 257
Query: 243 LLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDL 302
++D+LVKP N I+DY T +SGIT ++L+ VTT LKD+Q + L+ + +LVGHSL+ DL
Sbjct: 258 VMDELVKPDNKILDYLTSFSGITKKILNPVTTRLKDVQRQLKSLLPPDAVLVGHSLDLDL 317
Query: 303 LALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-QSGFGHDSTEDARAAME 361
ALK+ H VIDT++LY QG K L+ LAK L ++IQ + GHD+TEDAR +E
Sbjct: 318 RALKMIHPYVIDTSLLYVREQGRRFK--LKFLAKAILGKDIQCPNRLGHDATEDARTTLE 375
Query: 362 LA 363
LA
Sbjct: 376 LA 377
Score = 37 (18.1 bits), Expect = 4.2e-33, Sum P(2) = 4.2e-33
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 413 EVLSKARKEVKNDRIHFVWTQFS 435
E S + E N R+ WT+ S
Sbjct: 484 EPFSPSLTEEMNKRMRIKWTEMS 506
>UNIPROTKB|E2RFH4 [details] [associations]
symbol:LOC479820 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
EMBL:AAEX03004472 Ensembl:ENSCAFT00000028470 Uniprot:E2RFH4
Length = 733
Score = 371 (135.7 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 84/192 (43%), Positives = 122/192 (63%)
Query: 177 ITYYTLTEKQLEDNNY-CYNQPGFLSTVPAPFGSSPYE---ILALDCEMCYTNEGLELTR 232
+T LT+++++ ++ P + VP S + + LDCEMC T++G ELTR
Sbjct: 143 LTRCLLTKEEMKTFHFPLQGCPDCANFVPTKCNGSITDNSPLFGLDCEMCVTSKGRELTR 202
Query: 233 VTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETI 292
++LV G ++D+LVKP N I+DY T +SGIT ++L+ VTT LKD+Q + L+ + +
Sbjct: 203 ISLVAEGGSCVMDELVKPDNKILDYLTSFSGITKKILNPVTTRLKDVQRQLKSLLPPDAV 262
Query: 293 LVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-QSGFGHD 351
LVGHSL+ DL ALK+ H VIDT++LY QG K L+ LAK L ++IQ + GHD
Sbjct: 263 LVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKFLAKAILGKDIQCPNRLGHD 320
Query: 352 STEDARAAMELA 363
+TEDAR +ELA
Sbjct: 321 ATEDARTTLELA 332
Score = 37 (18.1 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 413 EVLSKARKEVKNDRIHFVWTQFS 435
E S + E N R+ WT+ S
Sbjct: 446 EPFSPSLTEEMNKRMRIKWTEMS 468
>UNIPROTKB|Q96IC2 [details] [associations]
symbol:44M2.3 "Putative RNA exonuclease NEF-sp"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004381
GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:CH471228 HOVERGEN:HBG101031 OMA:KMIHPYV
EMBL:AF332193 EMBL:AL136763 EMBL:AK057254 EMBL:AK314458
EMBL:BC007646 EMBL:BC068503 EMBL:AL162035 IPI:IPI00021754
IPI:IPI00307029 PIR:T47187 RefSeq:NP_001138396.1
RefSeq:NP_001185982.1 RefSeq:NP_112203.2 UniGene:Hs.177926
ProteinModelPortal:Q96IC2 SMR:Q96IC2 IntAct:Q96IC2
PhosphoSite:Q96IC2 DMDM:74760869 PaxDb:Q96IC2 PRIDE:Q96IC2
DNASU:81691 GeneID:81691 KEGG:hsa:81691 UCSC:uc002dhv.3
UCSC:uc002dhx.3 GeneCards:GC16P020817 HPA:HPA040755 HPA:HPA040868
neXtProt:NX_Q96IC2 InParanoid:Q96IC2 OrthoDB:EOG44F69Z
PhylomeDB:Q96IC2 GenomeRNAi:81691 NextBio:72040 Bgee:Q96IC2
Genevestigator:Q96IC2 Uniprot:Q96IC2
Length = 774
Score = 364 (133.2 bits), Expect = 8.6e-31, P = 8.6e-31
Identities = 79/156 (50%), Positives = 107/156 (68%)
Query: 209 SSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEM 268
+SP + LDCEMC T++G ELTR++LV G ++D+LVKP N I+DY T +SGIT ++
Sbjct: 225 NSP--LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKI 282
Query: 269 LSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHK 328
L+ VTT LKD+Q + L+ + +LVGHSL+ DL ALK+ H VIDT++LY QG K
Sbjct: 283 LNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK 342
Query: 329 TSLRVLAKKFLSREIQ-QSGFGHDSTEDARAAMELA 363
L+ LAK L ++IQ GHD+TEDAR +ELA
Sbjct: 343 --LKFLAKVILGKDIQCPDRLGHDATEDARTILELA 376
>FB|FBgn0261548 [details] [associations]
symbol:CG42666 species:7227 "Drosophila melanogaster"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:AE014298 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 FlyBase:FBgn0261548 UniGene:Dm.19
GeneID:31136 KEGG:dme:Dmel_CG42666 GenomeRNAi:31136 NextBio:772085
EMBL:AY069617 RefSeq:NP_569945.1 SMR:Q8T023
EnsemblMetazoa:FBtr0302654 UCSC:CG14801-RB InParanoid:Q8T023
Uniprot:Q8T023
Length = 787
Score = 359 (131.4 bits), Expect = 3.6e-30, P = 3.6e-30
Identities = 74/171 (43%), Positives = 107/171 (62%)
Query: 199 FLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYN 258
F+ T G + ALDCEM YT GL++T+V+LV + GQ++ + V+P I+DYN
Sbjct: 605 FVRTEHRGSGEDEPAVYALDCEMSYTGRGLDVTKVSLVALNGQLVYEHFVRPVCDIIDYN 664
Query: 259 TRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVL 318
T+YSGIT L SL ++Q + L+L+ +TIL+GH LENDL AL++ H +IDT++
Sbjct: 665 TQYSGITETDLCSGAKSLAEVQRDLLQLITADTILIGHGLENDLRALRLVHNTLIDTSIS 724
Query: 319 YKHPQGGSHKTSLRVLAKKFLSREIQQSG--FGHDSTEDARAAMELALLKI 367
+ H G ++ +LR L K L R+IQ GH S ED+RA MEL L ++
Sbjct: 725 FPHCNGFPYRRALRHLTKVHLKRDIQAGDGTTGHSSFEDSRACMELMLWRV 775
>WB|WBGene00015462 [details] [associations]
symbol:C05C8.5 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 GeneTree:ENSGT00630000089807 EMBL:FO080353 PIR:T31744
RefSeq:NP_504838.1 ProteinModelPortal:O16312 SMR:O16312
PaxDb:O16312 EnsemblMetazoa:C05C8.5.1 EnsemblMetazoa:C05C8.5.2
GeneID:179116 KEGG:cel:CELE_C05C8.5 UCSC:C05C8.5 CTD:179116
WormBase:C05C8.5 HOGENOM:HOG000021553 InParanoid:O16312 OMA:DAWAAMR
NextBio:903992 Uniprot:O16312
Length = 594
Score = 353 (129.3 bits), Expect = 6.7e-30, P = 6.7e-30
Identities = 93/261 (35%), Positives = 142/261 (54%)
Query: 178 TYYTLTEKQLEDNNYCYNQPGFLSTVPAPFG----SSPYEILALDCEMCYTN-EGLELTR 232
+++ LT +QL Y + PG VP G S+ + ++DCEMC T+ ELTR
Sbjct: 183 SHFVLTTEQLAQRRYPF--PGEEGVVPTKQGYKKISASSPMFSVDCEMCETDVANRELTR 240
Query: 233 VTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETI 292
+++VD +LD LVKP I DY TR+SGIT +M+ GVTT+L D+Q+ L+ + I
Sbjct: 241 ISIVDEFENTILDTLVKPEGRITDYVTRWSGITPDMMEGVTTTLGDVQKAIQSLLPPDAI 300
Query: 293 LVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSH-KTSLRVLAKKFLSREIQQSGFGHD 351
LVGHSLE+DL A+K++H +D + + + + SL+ L + FL +IQ S FGH
Sbjct: 301 LVGHSLEHDLQAMKMTHPFCLDVGHVLNYTNSNTEFRNSLKNLTELFLGAQIQ-SEFGHC 359
Query: 352 STEDARAAMELALLKIRNVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSD 411
S EDA AAM LA LK+ + + ++Y + + +N ++ K+ + + +D
Sbjct: 360 SYEDAWAAMRLAQLKLEKGLMFGNVSFGWKYSEYAK--NNGAVEKKIVTAAEITSKPCTD 417
Query: 412 DEVLSKARKEVKNDRIHFVWT 432
+ V N R FV T
Sbjct: 418 CSQPTVVACTVANCRCRFVST 438
>FB|FBgn0035707 [details] [associations]
symbol:CG8368 species:7227 "Drosophila melanogaster"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:AE014296 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 GeneTree:ENSGT00630000089807 EMBL:BT023775
RefSeq:NP_648050.1 RefSeq:NP_729177.1 UniGene:Dm.30144 SMR:Q9VRX7
IntAct:Q9VRX7 MINT:MINT-298361 EnsemblMetazoa:FBtr0076976
EnsemblMetazoa:FBtr0076977 GeneID:38740 KEGG:dme:Dmel_CG8368
UCSC:CG8368-RA FlyBase:FBgn0035707 InParanoid:Q9VRX7 OMA:DKFPRTK
OrthoDB:EOG49P8DJ GenomeRNAi:38740 NextBio:810128 Uniprot:Q9VRX7
Length = 681
Score = 353 (129.3 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 118/381 (30%), Positives = 190/381 (49%)
Query: 161 SENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLST----------VPAPFGS- 209
S S S ++ +D FP T L+ Q+ D Y G L T + AP +
Sbjct: 294 SSKSESDDMHEDDKFPRTKLLLSALQMVDEGYPIPLQGELHTRFQNFKFTKDLYAPVTNR 353
Query: 210 SPYEILALDCEMCYTNEGL-ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEM 268
SP + +DCEMC+T G ELTR+++V+ + + + LV P+N I DY T+YSGIT E+
Sbjct: 354 SP--MFGVDCEMCHTEAGCNELTRISIVNENYETVYETLVLPNNRITDYLTQYSGITAEI 411
Query: 269 LSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHK 328
+ VT L +Q+E +L+ + ILVG SL +DL A+K+ H VIDT+V + K
Sbjct: 412 MEQVTKRLDVVQKEVSELLPPDAILVGQSLNSDLNAMKMMHPYVIDTSVCFNTSGVRRRK 471
Query: 329 TSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMR--TKLL---KVLFEYG 383
T L+ LAK FL IQ++ GHDS ED+RA ++L K+ N + ++L K L E
Sbjct: 472 TKLKDLAKTFLQEIIQENIDGHDSIEDSRATLKLVKKKLANSIEFGDQILTQHKQLQELA 531
Query: 384 KTST--LIDNVSIIKRYASESSHAIPVSSDD------EVLSKARKEVKNDRIHFVWTQFS 435
S+ I N ++ A V+ + EV+ KA + D Q +
Sbjct: 532 NASSGDTISN-NLFAHVAKRDKRTAIVTVGELQPRLKEVIEKAGEAAPKD-------QST 583
Query: 436 ELNLHFKKQAKDEA-KLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVN 494
+++H AK+ K+NE E +L + ++ + + F+ + +A+ D ++
Sbjct: 584 SVHVHEVSTAKEAIRKVNEVALEN-ALTIANLRVPE----QDFILDSAQRSVAKLDKTID 638
Query: 495 SLYTALPTNTMLIICTGHGDT 515
L+ ++ N + ++ G G T
Sbjct: 639 RLWKSVAHNGLFLVIMG-GST 658
>RGD|1305412 [details] [associations]
symbol:Exnef "exonuclease NEF-sp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 RGD:1305412 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 HOGENOM:HOG000015091 HOVERGEN:HBG101031 OrthoDB:EOG44F69Z
EMBL:BC128775 IPI:IPI00565694 RefSeq:NP_001073174.1
UniGene:Rn.203990 ProteinModelPortal:A1A5R7 PhosphoSite:A1A5R7
PRIDE:A1A5R7 GeneID:309036 KEGG:rno:309036 UCSC:RGD:1305412
CTD:309036 InParanoid:A1A5R7 NextBio:660038 Genevestigator:A1A5R7
Uniprot:A1A5R7
Length = 754
Score = 341 (125.1 bits), Expect = 6.5e-29, Sum P(3) = 6.5e-29
Identities = 78/155 (50%), Positives = 102/155 (65%)
Query: 209 SSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEM 268
SSP + LDCE+C T+ G ELTR++LV G L+D+LVKP I+DY T +SGIT E+
Sbjct: 219 SSP--LFGLDCEVCLTSMGKELTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEI 276
Query: 269 LSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHK 328
L+ VTT LKD+Q+ +L+ + +LVGH L+ DL LKI H VIDT++LY QG K
Sbjct: 277 LNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLYIGKQGRRFK 336
Query: 329 TSLRVLAKKFLSREIQ-QSGFGHDSTEDARAAMEL 362
L LAK L ++IQ + GHD EDAR A+EL
Sbjct: 337 --LTFLAKVILGKDIQCPNKLGHDGIEDARTALEL 369
Score = 49 (22.3 bits), Expect = 6.5e-29, Sum P(3) = 6.5e-29
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 371 MRTKLLKVLFEYG-KTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHF 429
MR+ +L+ L G K L ++ + Y + + SS+ EVL +AR EV +
Sbjct: 404 MRS-VLECLDSMGQKLLFLTQDIDELSSY--RNCQTVKCSSNKEVLEQARVEVPLFPFNI 460
Query: 430 VWTQFSELNLHFKKQAKDEAK 450
V F F ++ K+ K
Sbjct: 461 VQFSFRPFPPLFAEEMKNNMK 481
Score = 37 (18.1 bits), Expect = 6.5e-29, Sum P(3) = 6.5e-29
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 474 FKSFVTPEIKEILARTDARVNSLYTALPTNTM-LIICTGHGDT 515
F++ K + R R+ LY +L T LI+ G +T
Sbjct: 690 FRTLKANHPKIVAWRWSRRIEKLYHSLSPGTFCLILLPGTKNT 732
>UNIPROTKB|F1M6V9 [details] [associations]
symbol:Exnef "Protein Exnef" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00479 Pfam:PF00929 RGD:1305412 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00630000089807 IPI:IPI00565694
Ensembl:ENSRNOT00000019654 Uniprot:F1M6V9
Length = 754
Score = 341 (125.1 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 78/155 (50%), Positives = 102/155 (65%)
Query: 209 SSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEM 268
SSP + LDCE+C T+ G ELTR++LV G L+D+LVKP I+DY T +SGIT E+
Sbjct: 219 SSP--LFGLDCEVCLTSMGKELTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEI 276
Query: 269 LSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHK 328
L+ VTT LKD+Q+ +L+ + +LVGH L+ DL LKI H VIDT++LY QG K
Sbjct: 277 LNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLYIGKQGRRFK 336
Query: 329 TSLRVLAKKFLSREIQ-QSGFGHDSTEDARAAMEL 362
L LAK L ++IQ + GHD EDAR A+EL
Sbjct: 337 --LTFLAKVILGKDIQCPNKLGHDGIEDARTALEL 369
Score = 49 (22.3 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 371 MRTKLLKVLFEYG-KTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHF 429
MR+ +L+ L G K L ++ + Y + + SS+ EVL +AR EV +
Sbjct: 404 MRS-VLECLDSMGQKLLFLTQDIDELSSY--RNCQTVKCSSNKEVLEQARVEVPLFPFNI 460
Query: 430 VWTQFSELNLHFKKQAKDEAK 450
V F F ++ K+ K
Sbjct: 461 VQFSFRPFPPLFAEEMKNNMK 481
>UNIPROTKB|F1RPB4 [details] [associations]
symbol:F1RPB4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
OMA:KMIHPYV EMBL:FP016068 EMBL:CU464004 Ensembl:ENSSSCT00000008605
Uniprot:F1RPB4
Length = 790
Score = 338 (124.0 bits), Expect = 9.7e-28, P = 9.7e-28
Identities = 102/307 (33%), Positives = 157/307 (51%)
Query: 67 PSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALLALSCLSDTMLT 126
PSW + ++ + VV+ + G+ + L+ + GF + + L SD +
Sbjct: 84 PSWCQLFHQNHLNNVVVFILQGM-SQLHFYRFYLEFGFLRKAFRHKFRLPPPS-SDFLAD 141
Query: 127 IDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQ 186
I GL + K+K + + + PS S +N + +T LT+++
Sbjct: 142 IIGL---QRKKKIGDLSKTMEGSLPSVSSKVSISPQNDPIIQKYGSKKVGLTRCLLTKEE 198
Query: 187 LEDNNYCYNQPGFLSTVPAPFGS-------SPYEILALDCEMCYTNEGLELTRVTLVDIK 239
++ Y + GF + S + + LD C T++G ELTR++LV
Sbjct: 199 MKA--YHFPLQGFFKSEKIVAKSKVTGENFTHSHLSGLDNNRCLTSKGRELTRISLVAEG 256
Query: 240 GQVLLDKLVKPSNAIVDYNTR--YSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHS 297
G ++D+LVKP N IVDY T +SGIT ++L+ VTT LKD+Q + L+ + +LVGHS
Sbjct: 257 GCCVMDELVKPDNKIVDYLTSESFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHS 316
Query: 298 LENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-QSGFGHDSTEDA 356
L+ DL ALK+ H VIDT++LY QG K L+ LAK L ++IQ GHD+ EDA
Sbjct: 317 LDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKFLAKTILGKDIQCPDRLGHDAIEDA 374
Query: 357 RAAMELA 363
R +ELA
Sbjct: 375 RTTLELA 381
>WB|WBGene00013244 [details] [associations]
symbol:Y56A3A.33 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0006974
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AL132860 KO:K14570 GeneTree:ENSGT00630000089807
RefSeq:NP_499565.1 ProteinModelPortal:Q9U220 SMR:Q9U220
EnsemblMetazoa:Y56A3A.33.1 EnsemblMetazoa:Y56A3A.33.2 GeneID:176636
KEGG:cel:CELE_Y56A3A.33 UCSC:Y56A3A.33 CTD:176636
WormBase:Y56A3A.33 HOGENOM:HOG000019974 InParanoid:Q9U220
OMA:HTLNGLE NextBio:893398 ArrayExpress:Q9U220 Uniprot:Q9U220
Length = 365
Score = 314 (115.6 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 69/154 (44%), Positives = 102/154 (66%)
Query: 213 EILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITH-EMLSG 271
++ ALDCE+ +T GLE+ RV+LVD+KG+VLLD P ++ +N+ +SG+T +M S
Sbjct: 180 KVFALDCELVHTLNGLEVARVSLVDMKGKVLLDTFALPVFEVISFNSTFSGVTEKDMESA 239
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGG-SH--K 328
+ SL+ + + +L+ ET+LVGHSLE+DL AL++ H VIDTAVL+ S+ K
Sbjct: 240 I--SLEACRLQLFQLINSETLLVGHSLESDLKALRLVHHNVIDTAVLFSIVDPSRSYILK 297
Query: 329 TSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
SL+ LAKK+L +++Q GH S ED+ MEL
Sbjct: 298 LSLQNLAKKYLCKDVQSEASGHSSIEDSHTCMEL 331
>TAIR|locus:2083163 [details] [associations]
symbol:SDN1 "small RNA degrading nuclease 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0010587 "miRNA catabolic process" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR012677
SMART:SM00479 Pfam:PF00929 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0008408 EMBL:AL132978 KO:K14570 GO:GO:0010587 EMBL:BT030315
IPI:IPI00540352 PIR:T45863 RefSeq:NP_190579.2 UniGene:At.35533
ProteinModelPortal:A3KPE8 SMR:A3KPE8 PaxDb:A3KPE8 PRIDE:A3KPE8
EnsemblPlants:AT3G50100.1 GeneID:824172 KEGG:ath:AT3G50100
TAIR:At3g50100 HOGENOM:HOG000083886 InParanoid:A3KPE8 OMA:DYRTDIT
PhylomeDB:A3KPE8 ProtClustDB:CLSN2925541 Genevestigator:A3KPE8
Uniprot:A3KPE8
Length = 409
Score = 312 (114.9 bits), Expect = 2.4e-27, P = 2.4e-27
Identities = 78/205 (38%), Positives = 111/205 (54%)
Query: 194 YNQPGFLSTVPAPFGS--SPYEILALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLVKP 250
Y++ F+S V ++A+DCEM +G E L RV +VD +V+LD+ VKP
Sbjct: 118 YSEDWFVSDVGMKMKKVMESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKP 177
Query: 251 SNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG 310
+ +VDY T +GIT E + + S+ DIQE + TILVGHSL DL LKI H
Sbjct: 178 NKPVVDYRTDITGITAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHP 237
Query: 311 LVIDTAVLYKHPQGGS-HKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369
VIDTA+++K+P + SL L K L E++++G HD DA AAM+LAL +
Sbjct: 238 KVIDTALVFKYPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEK 297
Query: 370 VMRT--KLLKVLFEYGKTSTLIDNV 392
+ T K K + E K + +
Sbjct: 298 RVDTTIKPSKEMLEVEKAKLFLHKI 322
>POMBASE|SPAC1782.08c [details] [associations]
symbol:rex3 "exonuclease Rex3 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISO] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=ISO] [GO:0043628 "ncRNA 3'-end processing" evidence=ISO]
InterPro:IPR000571 InterPro:IPR006055 InterPro:IPR012337
PROSITE:PS50103 SMART:SM00479 PomBase:SPAC1782.08c Pfam:PF00929
GO:GO:0005739 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000467
GO:GO:0034476 PIR:T50098 RefSeq:NP_594715.1
ProteinModelPortal:Q9P7H2 EnsemblFungi:SPAC1782.08c.1
GeneID:2542165 KEGG:spo:SPAC1782.08c OMA:CETANSK OrthoDB:EOG48KVM8
NextBio:20803237 Uniprot:Q9P7H2
Length = 540
Score = 326 (119.8 bits), Expect = 6.4e-27, P = 6.4e-27
Identities = 78/192 (40%), Positives = 114/192 (59%)
Query: 187 LEDNN-YCYNQPGFLSTV------PAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIK 239
+EDN+ + Y +L++V P S ALDCE+CYT G+EL R+T+V K
Sbjct: 348 IEDNHVFKYRHLPYLASVHPFSYLPDSTNSKQLSHCALDCELCYTTNGMELARLTVV-AK 406
Query: 240 GQVLLDKLVKPSNAIVDYNTRYSGI--THEMLSGVTTSLKDIQEEFLKLVYKETILVGHS 297
+++D +KP I+ NTR+SGI E+ SG+T I+ + L + K TIL+GH
Sbjct: 407 ESIIMDVFIKPKGKILSLNTRFSGIHDAKELESGITMDQMYIKIKELGM-NKNTILIGHG 465
Query: 298 LENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDAR 357
LENDL A+++ H VIDTA+L+ H +G + SL+ L KK+L IQ S HDS EDA
Sbjct: 466 LENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKYLTKKYLGTTIQTST--HDSEEDAV 523
Query: 358 AAMELALLKIRN 369
+A++L K ++
Sbjct: 524 SALQLVFYKTKS 535
>TAIR|locus:2169717 [details] [associations]
symbol:SDN2 "small RNA degrading nuclease 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003676 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AB005241 KO:K14570
HOGENOM:HOG000083886 EMBL:BT009685 EMBL:AK118437 IPI:IPI00548498
IPI:IPI00892313 RefSeq:NP_001119175.1 RefSeq:NP_196173.1
UniGene:At.43773 ProteinModelPortal:Q9FFG1 SMR:Q9FFG1 IntAct:Q9FFG1
PaxDb:Q9FFG1 PRIDE:Q9FFG1 EnsemblPlants:AT5G05540.1 GeneID:830437
KEGG:ath:AT5G05540 TAIR:At5g05540 InParanoid:Q9FFG1 OMA:QAFENIA
PhylomeDB:Q9FFG1 ProtClustDB:CLSN2686647 Genevestigator:Q9FFG1
Uniprot:Q9FFG1
Length = 466
Score = 318 (117.0 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 88/258 (34%), Positives = 136/258 (52%)
Query: 213 EILALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
E++A+DCEM +G E + RV VD +V+LD+ VKP+ +VDY T +G+T + L
Sbjct: 141 EMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEK 200
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKT-- 329
T S+ DIQE+ L + ++TILVG SL +DL LK+ H VIDT++++K+ G+ +
Sbjct: 201 ATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLR 260
Query: 330 ----SLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTK--LLKVLFEYG 383
SL L K L E+Q+ G H+ DA AAM+L L + N T L K + E
Sbjct: 261 LKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVPLSKEMLEAE 320
Query: 384 KTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHF----VWTQFSELNL 439
K+ + + Y E + + VS D + + + K DR ++ V+ E N
Sbjct: 321 KSKLYLHRIPCNVPY--EELNGV-VSRD--IPHEVKPSKKQDRHYYSAIVVFKSPEEANQ 375
Query: 440 HFKKQAKDEAKLNEKLAE 457
F+ A D K + L++
Sbjct: 376 AFENIAGDFGKDSRGLSQ 393
>WB|WBGene00004095 [details] [associations]
symbol:pqe-1 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005634 GO:GO:0003676 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 KO:K14570
EMBL:FO081435 PIR:T16421 RefSeq:NP_498135.2 RefSeq:NP_498136.2
RefSeq:NP_498137.2 RefSeq:NP_741133.1 RefSeq:NP_741134.1
RefSeq:NP_741135.1 UniGene:Cel.17767 ProteinModelPortal:Q10124
SMR:Q10124 DIP:DIP-26275N MINT:MINT-1038159 STRING:Q10124
PaxDb:Q10124 PRIDE:Q10124 EnsemblMetazoa:F52C9.8b GeneID:175731
KEGG:cel:CELE_F52C9.8 UCSC:F52C9.8d.2 CTD:175731 WormBase:F52C9.8a
WormBase:F52C9.8b WormBase:F52C9.8c WormBase:F52C9.8d
WormBase:F52C9.8e WormBase:F52C9.8f GeneTree:ENSGT00630000089807
InParanoid:Q10124 OMA:DICRYHN NextBio:889402 ArrayExpress:Q10124
Uniprot:Q10124
Length = 1647
Score = 332 (121.9 bits), Expect = 5.9e-26, Sum P(2) = 5.9e-26
Identities = 72/175 (41%), Positives = 106/175 (60%)
Query: 199 FLST-VPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDY 257
F+ST VP P + ALDCEM YT G L R+T+VD++ +LD VKP ++D
Sbjct: 1462 FVSTPVPVPNDQRSTRVYALDCEMVYTIAGPALARLTMVDMQRNRVLDVFVKPPTDVLDP 1521
Query: 258 NTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAV 317
NT +SG+T E ++ +LK ++ K V +TIL+GHSLE+DL A+++ H VIDTA+
Sbjct: 1522 NTEFSGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVHKNVIDTAI 1581
Query: 318 LYKHPQGGSHKTSLRVLAKKFLSREIQ---QSGFGHDSTEDARAAMELALLKIRN 369
L++ + K +L+VL+ K L + IQ + GHDS EDA ++L +RN
Sbjct: 1582 LFRSTR--DTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDLIFYGLRN 1634
Score = 43 (20.2 bits), Expect = 5.9e-26, Sum P(2) = 5.9e-26
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 135 LKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAE---LLKDIPFPITY-YTLTEKQLEDN 190
L+ +NAV S K K+NC+ + + L + P+ + LT +LE N
Sbjct: 1293 LEVNKNAV-SHDKILAGGPKDNCTVARGRKTHVDHRQLSIEKLHPLLLQFKLTTSELETN 1351
Query: 191 NYCYNQPGFLSTV 203
Y + G V
Sbjct: 1352 AYPMRRDGSTKAV 1364
>CGD|CAL0006310 [details] [associations]
symbol:orf19.4948 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
CGD:CAL0006310 Pfam:PF00929 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AACQ01000010
EMBL:AACQ01000009 GO:GO:0006364 RefSeq:XP_722159.1
RefSeq:XP_722272.1 ProteinModelPortal:Q5AL29 STRING:Q5AL29
GeneID:3636061 GeneID:3636164 KEGG:cal:CaO19.12413
KEGG:cal:CaO19.4948 Uniprot:Q5AL29
Length = 404
Score = 296 (109.3 bits), Expect = 2.7e-25, P = 2.7e-25
Identities = 67/167 (40%), Positives = 106/167 (63%)
Query: 210 SPYEILALDCEMCYTNEGLELTRVTLVD-IKGQVLLDKLVKPSNAIVDYNTRYSGITHEM 268
S +L +DCEM +T +G EL R+T +D + +LD +KP IVD+NTRYSGI HE+
Sbjct: 237 SKSRVLGIDCEMGFTTKGFELMRITAIDYFTSKTVLDIFIKPIGEIVDFNTRYSGI-HEL 295
Query: 269 LSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLY--KHPQGGS 326
S + E+ +++ ETIL+GH LEND+ A+++ H +IDT++L+ K G +
Sbjct: 296 TDDFL-SWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIHENIIDTSILFPNKWKTGPT 354
Query: 327 HKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRT 373
+ SL+ LA +FLSR IQ +G HDS ED+ AA+++ ++ +++
Sbjct: 355 RRWSLKDLAFEFLSRRIQ-TG-EHDSCEDSIAAIDIVKYFVKKQLQS 399
>UNIPROTKB|H3BQ98 [details] [associations]
symbol:LOC81691 "Protein LOC81691" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
EMBL:AC004381 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
Ensembl:ENST00000565340 Bgee:H3BQ98 Uniprot:H3BQ98
Length = 143
Score = 286 (105.7 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 62/121 (51%), Positives = 83/121 (68%)
Query: 244 LDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLL 303
+D+LVKP N I+DY T +SGIT ++L+ VTT LKD+Q + L+ + +LVGHSL+ DL
Sbjct: 1 MDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLR 60
Query: 304 ALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-QSGFGHDSTEDARAAMEL 362
ALK+ H VIDT++LY QG K L+ LAK L ++IQ GHD+TEDAR +EL
Sbjct: 61 ALKMIHPYVIDTSLLYVREQGRRFK--LKFLAKVILGKDIQCPDRLGHDATEDARTILEL 118
Query: 363 A 363
A
Sbjct: 119 A 119
>SGD|S000004097 [details] [associations]
symbol:REX3 "RNA exonuclease" species:4932 "Saccharomyces
cerevisiae" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IMP] [GO:0043628 "ncRNA
3'-end processing" evidence=IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IGI] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IGI] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
SGD:S000004097 Pfam:PF00929 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 EMBL:BK006945 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:X89514 EMBL:U53878 EMBL:U53876 GO:GO:0000175
GO:GO:0000467 GO:GO:0034476 OrthoDB:EOG48KVM8 EMBL:Z73279
EMBL:Z73280 PIR:S64944 RefSeq:NP_013208.1 ProteinModelPortal:Q12090
SMR:Q12090 STRING:Q12090 EnsemblFungi:YLR107W GeneID:850797
KEGG:sce:YLR107W CYGD:YLR107w HOGENOM:HOG000154095 OMA:DCEMAFT
NextBio:967014 Genevestigator:Q12090 GermOnline:YLR107W
Uniprot:Q12090
Length = 404
Score = 287 (106.1 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 66/157 (42%), Positives = 100/157 (63%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVDI-KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV 272
+L+LDCEM +T+ G E+ R+T+VD G+ L D +++P IVD N+ +SG+ HE+
Sbjct: 243 VLSLDCEMAFTSLGYEMIRLTIVDFFTGKTLFDHVIQPIGDIVDLNSDFSGV-HEIDRTN 301
Query: 273 TTSLKDIQEEFLK--LVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTS 330
+ K+ + FL L+ K +IL+GH LENDL +++ H VIDTA+LY + K S
Sbjct: 302 CPTYKEALDVFLSENLINKNSILIGHGLENDLNVMRLFHNKVIDTAILYSRTK---FKVS 358
Query: 331 LRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKI 367
L+ LA + LSR+IQ HDS++DA A M++ +KI
Sbjct: 359 LKNLAFEVLSRKIQNGE--HDSSQDAIATMDVVKVKI 393
>TAIR|locus:2155563 [details] [associations]
symbol:SDN3 "small RNA degrading nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0016592 "mediator complex" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00479 Pfam:PF00929 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AB020742 GO:GO:0016592 KO:K14570 UniGene:At.28408
UniGene:At.71151 EMBL:AY080843 EMBL:BT001977 IPI:IPI00524191
RefSeq:NP_201525.2 ProteinModelPortal:Q8RXK2 SMR:Q8RXK2
IntAct:Q8RXK2 STRING:Q8RXK2 PaxDb:Q8RXK2 PRIDE:Q8RXK2
EnsemblPlants:AT5G67240.1 GeneID:836859 KEGG:ath:AT5G67240
TAIR:At5g67240 HOGENOM:HOG000154279 InParanoid:Q8RXK2 OMA:LYVRKMV
PhylomeDB:Q8RXK2 ProtClustDB:CLSN2918891 Genevestigator:Q8RXK2
Uniprot:Q8RXK2
Length = 782
Score = 282 (104.3 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 62/156 (39%), Positives = 91/156 (58%)
Query: 214 ILALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV 272
+L++DCEM +G + L RV VD +V+LDK VKP ++DY T +G+T E L
Sbjct: 145 MLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLERA 204
Query: 273 TTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGG-SHKTSL 331
T S+ DIQ++ + + TILVGH L NDL L+I H VIDT+ +++ + + SL
Sbjct: 205 TLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAPKTQRPSL 264
Query: 332 RVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKI 367
L K L +E++ G H+ DA AAM+L L +
Sbjct: 265 NNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAV 300
>UNIPROTKB|F1MZX4 [details] [associations]
symbol:LOC614749 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005654
GO:GO:0005730 GO:GO:0042771 GO:GO:0003676 GO:GO:0010212
GO:GO:0004527 OMA:HKRKSRQ InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:DAAA02052106 IPI:IPI00714615
Ensembl:ENSBTAT00000023454 Uniprot:F1MZX4
Length = 325
Score = 252 (93.8 bits), Expect = 8.9e-21, P = 8.9e-21
Identities = 73/174 (41%), Positives = 97/174 (55%)
Query: 201 STVPAPFGSS---PYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAI 254
S PAP S+ P + +A+DCEM T G EL R ++V G+VL DK ++P I
Sbjct: 94 SRKPAPRDSAGPLPSKCVAIDCEMVGTGPRGRVSELARCSVVSYHGEVLYDKYIRPEMPI 153
Query: 255 VDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLV 312
VDY TR+SGIT + + + Q+E LKL+ K ++VGH+L ND ALK H G
Sbjct: 154 VDYRTRWSGITRQHMRKAIP-FQVAQKEILKLL-KGKVVVGHALHNDFQALKYIHPRGQT 211
Query: 313 IDT-AVLYKHPQGGSH---KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
DT +V Q G H + SL+ LA + L ++IQ GH S EDA AMEL
Sbjct: 212 RDTTSVPSLLSQPGLHVRNRVSLKDLALQLLHKKIQVGQHGHSSVEDAVTAMEL 265
>UNIPROTKB|E2R2F5 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016605 "PML body" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008310 "single-stranded DNA
specific 3'-5' exodeoxyribonuclease activity" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=IEA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0016605 GO:GO:0003676
GO:GO:0009615 GO:GO:0006401 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0000175 GO:GO:0000738 GO:GO:0008310
Ensembl:ENSCAFT00000018291 Uniprot:E2R2F5
Length = 183
Score = 252 (93.8 bits), Expect = 8.9e-21, P = 8.9e-21
Identities = 65/168 (38%), Positives = 97/168 (57%)
Query: 209 SSPYEILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITH 266
+S +++A+DCEM + L R +LVD+ G VL DK ++P I DY T+ SGIT
Sbjct: 2 ASGTDVVAIDCEMVGVGPSRKSGLARCSLVDLHGTVLYDKFIRPEGEITDYRTQVSGITP 61
Query: 267 EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA---VLYKH 321
+ T + E L+L+ + ++VGH L++D ALK +S+ + DT+ +L++
Sbjct: 62 RHMEQATP-FAVARLEILQLL-EGKLVVGHDLKHDFQALKENMSNYAIYDTSTDRLLWRE 119
Query: 322 PQ-GGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
+ SLRVL+++ L R IQ S FGH S EDA+AAMEL L R
Sbjct: 120 ANLQNCRRVSLRVLSERLLGRRIQNSRFGHSSVEDAKAAMELYRLSRR 167
>UNIPROTKB|F1PWV6 [details] [associations]
symbol:AEN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IEA] [GO:0010212 "response to ionizing radiation"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005654 GO:GO:0005730 GO:GO:0042771 GO:GO:0003676
GO:GO:0010212 GO:GO:0004527 OMA:HKRKSRQ InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 EMBL:AAEX03002316
EMBL:AAEX03002317 Ensembl:ENSCAFT00000018286 Uniprot:F1PWV6
Length = 336
Score = 252 (93.8 bits), Expect = 8.9e-21, P = 8.9e-21
Identities = 77/205 (37%), Positives = 102/205 (49%)
Query: 173 IPFPITYYTLTEKQLEDNNYCYNQPGFLS--TVPAP---FGSSPYEILALDCEMCYTN-E 226
+P P TE N+PG S P P G P + +A+DCEM T
Sbjct: 64 LPMPSEALPGTEATSSGMQRLRNEPGGASWSRKPTPRESAGPRPSKCVAIDCEMVGTGPR 123
Query: 227 GL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFL 284
G EL R ++V G VL DK ++P IVDY TR+SG+T + + + Q+E L
Sbjct: 124 GRVSELARCSVVSYHGDVLYDKYIRPEMPIVDYRTRWSGVTRQHMRKAIP-FQVAQKEIL 182
Query: 285 KLVYKETILVGHSLENDLLALKISH--GLVIDTAVLYK--HPQGGSH---KTSLRVLAKK 337
KL+ K ++VGH+L ND ALK H DT + H Q G H + SL+ LA +
Sbjct: 183 KLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLH-QPGLHTRTRVSLKDLALQ 240
Query: 338 FLSREIQQSGFGHDSTEDARAAMEL 362
L ++IQ GH S EDA AMEL
Sbjct: 241 LLHKKIQAGQHGHSSVEDATTAMEL 265
>UNIPROTKB|F6X5D6 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 CTD:3669 KO:K12579 OMA:ARCSLVD
Ensembl:ENSCAFT00000018291 EMBL:AAEX03002317 RefSeq:XP_545847.2
GeneID:488729 KEGG:cfa:488729 Uniprot:F6X5D6
Length = 171
Score = 252 (93.8 bits), Expect = 8.9e-21, P = 8.9e-21
Identities = 65/168 (38%), Positives = 97/168 (57%)
Query: 209 SSPYEILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITH 266
+S +++A+DCEM + L R +LVD+ G VL DK ++P I DY T+ SGIT
Sbjct: 2 ASGTDVVAIDCEMVGVGPSRKSGLARCSLVDLHGTVLYDKFIRPEGEITDYRTQVSGITP 61
Query: 267 EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA---VLYKH 321
+ T + E L+L+ + ++VGH L++D ALK +S+ + DT+ +L++
Sbjct: 62 RHMEQATP-FAVARLEILQLL-EGKLVVGHDLKHDFQALKENMSNYAIYDTSTDRLLWRE 119
Query: 322 PQ-GGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
+ SLRVL+++ L R IQ S FGH S EDA+AAMEL L R
Sbjct: 120 ANLQNCRRVSLRVLSERLLGRRIQNSRFGHSSVEDAKAAMELYRLSRR 167
>UNIPROTKB|J9PA78 [details] [associations]
symbol:AEN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 CTD:64782 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 EMBL:AAEX03002316
EMBL:AAEX03002317 RefSeq:XP_545846.2 Ensembl:ENSCAFT00000047692
GeneID:488728 KEGG:cfa:488728 Uniprot:J9PA78
Length = 324
Score = 252 (93.8 bits), Expect = 8.9e-21, P = 8.9e-21
Identities = 77/205 (37%), Positives = 102/205 (49%)
Query: 173 IPFPITYYTLTEKQLEDNNYCYNQPGFLS--TVPAP---FGSSPYEILALDCEMCYTN-E 226
+P P TE N+PG S P P G P + +A+DCEM T
Sbjct: 64 LPMPSEALPGTEATSSGMQRLRNEPGGASWSRKPTPRESAGPRPSKCVAIDCEMVGTGPR 123
Query: 227 GL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFL 284
G EL R ++V G VL DK ++P IVDY TR+SG+T + + + Q+E L
Sbjct: 124 GRVSELARCSVVSYHGDVLYDKYIRPEMPIVDYRTRWSGVTRQHMRKAIP-FQVAQKEIL 182
Query: 285 KLVYKETILVGHSLENDLLALKISH--GLVIDTAVLYK--HPQGGSH---KTSLRVLAKK 337
KL+ K ++VGH+L ND ALK H DT + H Q G H + SL+ LA +
Sbjct: 183 KLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLH-QPGLHTRTRVSLKDLALQ 240
Query: 338 FLSREIQQSGFGHDSTEDARAAMEL 362
L ++IQ GH S EDA AMEL
Sbjct: 241 LLHKKIQAGQHGHSSVEDATTAMEL 265
>RGD|1305051 [details] [associations]
symbol:Aen "apoptosis enhancing nuclease" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISO;ISS]
[GO:0010212 "response to ionizing radiation" evidence=IEA;ISO;ISS]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IEA;ISO;ISS]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
RGD:1305051 GO:GO:0005654 GO:GO:0005730 GO:GO:0042771 EMBL:CH473980
GO:GO:0003676 GO:GO:0010212 GO:GO:0004527 CTD:64782 eggNOG:COG0847
HOGENOM:HOG000182422 HOVERGEN:HBG100435 OrthoDB:EOG4P8FJM
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00520000055542
EMBL:BC166435 IPI:IPI00365766 RefSeq:NP_001101957.1
UniGene:Rn.46887 ProteinModelPortal:B2GUW6 SMR:B2GUW6 PRIDE:B2GUW6
Ensembl:ENSRNOT00000064438 GeneID:361594 KEGG:rno:361594
UCSC:RGD:1305051 NextBio:676841 Genevestigator:B2GUW6
Uniprot:B2GUW6
Length = 332
Score = 249 (92.7 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 72/177 (40%), Positives = 94/177 (53%)
Query: 198 GFLSTVPAPF---GSSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPS 251
G S P P S P + +A+DCEM T +G EL R ++V G VL DK ++P
Sbjct: 86 GLCSKRPVPREAPSSGPSKYVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPE 145
Query: 252 NAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH-G 310
IVDY TR+SGIT + + + Q+E LKL+ K ++VGH+L ND ALK H G
Sbjct: 146 MPIVDYRTRWSGITRQHMHKAIP-FQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPG 203
Query: 311 LVI-DTAV---LYKHPQGGSH-KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
I DT L P + + SL+ LA L ++IQ GH S EDA AMEL
Sbjct: 204 SQIRDTTYVPNLLSQPSSLTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMEL 260
>TAIR|locus:2083153 [details] [associations]
symbol:AT3G50090 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003676 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AL132978 KO:K14570
HOGENOM:HOG000083886 IPI:IPI00524773 PIR:T45862 RefSeq:NP_190578.1
UniGene:At.53865 ProteinModelPortal:Q9SN09 SMR:Q9SN09
EnsemblPlants:AT3G50090.1 GeneID:824171 KEGG:ath:AT3G50090
TAIR:At3g50090 InParanoid:Q9SN09 OMA:FLHRIPH PhylomeDB:Q9SN09
ProtClustDB:CLSN2914751 Genevestigator:Q9SN09 Uniprot:Q9SN09
Length = 322
Score = 249 (92.7 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 68/188 (36%), Positives = 101/188 (53%)
Query: 192 YCYNQPGFLSTVPAPFGSS--PYEILALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLV 248
+ Y++ F+S V + P ++LALDCEM +G E + RV VD +V+LD+ V
Sbjct: 51 HSYSKDWFVSDVGMKMSNVMIPNQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFV 110
Query: 249 KPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKIS 308
KP +VDY T +G+T E + T SL DIQE KL + + G A+ I
Sbjct: 111 KPHKPVVDYRTAITGVTAEDVQKATLSLVDIQE---KL--RPFLSAG--------AILID 157
Query: 309 HGLVIDTAVLYKHPQGGS-HKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKI 367
H +VIDT++++K+P + SL L L E+Q++G H DA AAM+LAL I
Sbjct: 158 HPIVIDTSLVFKYPNSRKLRRPSLNTLCMSVLGYEVQKAGVSHHCVHDAAAAMKLALAVI 217
Query: 368 RNVMRTKL 375
+ + T +
Sbjct: 218 KKRVDTTI 225
>UNIPROTKB|Q96AZ6 [details] [associations]
symbol:ISG20 "Interferon-stimulated gene 20 kDa protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0008859 "exoribonuclease II activity"
evidence=IEA] [GO:0016605 "PML body" evidence=IDA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IDA] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0009615 "response to virus" evidence=IDA]
[GO:0008283 "cell proliferation" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0019221 "cytokine-mediated
signaling pathway" evidence=TAS] [GO:0060337 "type I
interferon-mediated signaling pathway" evidence=TAS]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
Reactome:REACT_6900 GO:GO:0060337 GO:GO:0046872 GO:GO:0016605
GO:GO:0008283 GO:GO:0051607 GO:GO:0003723 GO:GO:0009615
GO:GO:0006401 eggNOG:COG0847 HOGENOM:HOG000182422
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006364 GO:GO:0000175
GO:GO:0000738 GO:GO:0008310 GO:GO:0008859 EMBL:X89773 EMBL:U88964
EMBL:BT006952 EMBL:CR456942 EMBL:BC007922 EMBL:BC016341
IPI:IPI00514614 IPI:IPI00647246 RefSeq:NP_002192.2
UniGene:Hs.459265 PDB:1WLJ PDBsum:1WLJ ProteinModelPortal:Q96AZ6
SMR:Q96AZ6 STRING:Q96AZ6 PhosphoSite:Q96AZ6 DMDM:57012967
PaxDb:Q96AZ6 PRIDE:Q96AZ6 DNASU:3669 Ensembl:ENST00000306072
Ensembl:ENST00000560741 GeneID:3669 KEGG:hsa:3669 UCSC:uc002bmv.1
CTD:3669 GeneCards:GC15P089181 HGNC:HGNC:6130 MIM:604533
neXtProt:NX_Q96AZ6 PharmGKB:PA29930 HOVERGEN:HBG052149 KO:K12579
OMA:ARCSLVD OrthoDB:EOG4M91SN PhylomeDB:Q96AZ6 ChiTaRS:ISG20
EvolutionaryTrace:Q96AZ6 GenomeRNAi:3669 NextBio:14359 Bgee:Q96AZ6
CleanEx:HS_ISG20 Genevestigator:Q96AZ6 GermOnline:ENSG00000172183
Uniprot:Q96AZ6
Length = 181
Score = 248 (92.4 bits), Expect = 2.4e-20, P = 2.4e-20
Identities = 63/158 (39%), Positives = 93/158 (58%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
E++A+DCEM E L R +LV++ G VL DK ++P I DY TR SG+T + +
Sbjct: 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA---VLYKHPQ-G 324
G T + E L+L+ K ++VGH L++D ALK +S + DT+ +L++ +
Sbjct: 66 GATP-FAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ SLRVL+++ L + IQ S GH S EDARA MEL
Sbjct: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161
>UNIPROTKB|I3LB04 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016605 "PML body" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0016605 GO:GO:0003676
GO:GO:0009615 GO:GO:0006401 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 GO:GO:0000175 GO:GO:0000738
GO:GO:0008310 OMA:ARCSLVD EMBL:FP017226 Ensembl:ENSSSCT00000024643
Uniprot:I3LB04
Length = 174
Score = 248 (92.4 bits), Expect = 2.4e-20, P = 2.4e-20
Identities = 66/164 (40%), Positives = 93/164 (56%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
+++A+DCEM E L R +LVD G VL DK ++P I DY T SGIT +
Sbjct: 6 DVVAMDCEMVGLGPFRESGLARCSLVDFHGTVLYDKFIRPEGEITDYRTPVSGITARNME 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA---VLYKHPQ-G 324
G T + E L+L+ K ++VGH L++D ALK +S+ + DTA +L++
Sbjct: 66 GATP-FAVARLEILQLL-KGKLVVGHDLKHDFKALKENMSNYTIYDTAQDRLLWREADLH 123
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
+ SLR+L+++ L R IQ S GH+S EDARA MEL L R
Sbjct: 124 YCRRVSLRLLSQRLLGRRIQDSVLGHNSVEDARATMELYRLSRR 167
>UNIPROTKB|E1BNM5 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016605 "PML body" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0016605 GO:GO:0003676
GO:GO:0009615 GO:GO:0006401 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 GO:GO:0000175 GO:GO:0000738
GO:GO:0008310 CTD:3669 KO:K12579 EMBL:DAAA02052106 IPI:IPI00695516
RefSeq:XP_002696560.1 RefSeq:XP_583075.1 UniGene:Bt.22275
ProteinModelPortal:E1BNM5 Ensembl:ENSBTAT00000019639 GeneID:506604
KEGG:bta:506604 NextBio:20867677 Uniprot:E1BNM5
Length = 171
Score = 246 (91.7 bits), Expect = 4.0e-20, P = 4.0e-20
Identities = 67/159 (42%), Positives = 91/159 (57%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
+++A+DCEM E L R +LVD G VL DK ++P I DY T SGIT +
Sbjct: 6 DVVAMDCEMVGLGPFRESGLARCSLVDYHGSVLYDKFIRPEGDITDYRTPVSGITARNME 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTAV---LYKHPQGG 325
G T + E L+ V K ++VGH L++D ALK +S + DTA L++ G
Sbjct: 66 GATP-FAVARLEILQ-VLKGKLVVGHDLKHDFKALKENMSDYAIYDTAADRRLWREA-GL 122
Query: 326 SH--KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ + SLRVL+++ L R IQ S GH+S EDARAAMEL
Sbjct: 123 QYCRRVSLRVLSQRLLGRRIQDSVLGHNSVEDARAAMEL 161
>UNIPROTKB|G3N2Q8 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016605 "PML body" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0016605 GO:GO:0003676
GO:GO:0009615 GO:GO:0006401 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 GO:GO:0000175 GO:GO:0000738
GO:GO:0008310 OMA:ARCSLVD EMBL:DAAA02052106
Ensembl:ENSBTAT00000065058 Uniprot:G3N2Q8
Length = 181
Score = 246 (91.7 bits), Expect = 4.0e-20, P = 4.0e-20
Identities = 67/159 (42%), Positives = 91/159 (57%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
+++A+DCEM E L R +LVD G VL DK ++P I DY T SGIT +
Sbjct: 6 DVVAMDCEMVGLGPFRESGLARCSLVDYHGSVLYDKFIRPEGDITDYRTPVSGITARNME 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTAV---LYKHPQGG 325
G T + E L+ V K ++VGH L++D ALK +S + DTA L++ G
Sbjct: 66 GATP-FAVARLEILQ-VLKGKLVVGHDLKHDFKALKENMSDYAIYDTAADRRLWREA-GL 122
Query: 326 SH--KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ + SLRVL+++ L R IQ S GH+S EDARAAMEL
Sbjct: 123 QYCRRVSLRVLSQRLLGRRIQDSVLGHNSVEDARAAMEL 161
>ZFIN|ZDB-GENE-070928-8 [details] [associations]
symbol:isg20l2 "interferon stimulated exonuclease
gene 20-like 2" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
ZFIN:ZDB-GENE-070928-8 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 CTD:81875
OrthoDB:EOG4H4641 EMBL:AL954306 EMBL:BC152518 IPI:IPI00931450
RefSeq:NP_001096663.1 UniGene:Dr.87096 Ensembl:ENSDART00000109664
GeneID:558447 KEGG:dre:558447 HOVERGEN:HBG095874 InParanoid:A3KH10
NextBio:20882472 Uniprot:A3KH10
Length = 321
Score = 246 (91.7 bits), Expect = 4.0e-20, P = 4.0e-20
Identities = 69/169 (40%), Positives = 91/169 (53%)
Query: 203 VPAPFGSSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNT 259
VP P G P + LALDCEM T +G EL R ++V G V+ DK VKP N + DY T
Sbjct: 127 VPRPPG--PIKYLALDCEMVGTGPKGAQSELARCSIVSYDGDVVYDKYVKPINPVTDYRT 184
Query: 260 RYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTA- 316
R+SGI + L T Q+E +K++ + ++VGH++ ND ALK H DT+
Sbjct: 185 RWSGIRRQDLLHATP-FYHAQKEIVKIITGK-VVVGHAIHNDFKALKYFHPAFQTRDTSR 242
Query: 317 -VLYKHPQGGSHK--TSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
L G K SL+ L + L R+IQ GH S EDA+A MEL
Sbjct: 243 IPLLNEKAGFPEKQCVSLKKLTQAILKRDIQTGYRGHSSVEDAKATMEL 291
>UNIPROTKB|H9L3P1 [details] [associations]
symbol:H9L3P1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AADN02034596 EMBL:AADN02034597
Ensembl:ENSGALT00000040830 Uniprot:H9L3P1
Length = 327
Score = 244 (91.0 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 64/161 (39%), Positives = 92/161 (57%)
Query: 211 PYEILALDCEMCYTNEG---LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P +++A+DCEM T G L R ++V +G VL D V+P+ IVDY TR+SGI +
Sbjct: 148 PSKLVAIDCEMVGTGPGGCTSSLARCSIVGYEGDVLYDSYVRPTEPIVDYRTRWSGIRKK 207
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG--LVIDTAVL-YKHPQG 324
+ K Q E LK++ + ++VGH++ ND ALK SH L DT+ + + +G
Sbjct: 208 HMVNAVPFCK-AQREILKILSGK-VVVGHAVHNDFKALKYSHPKELTRDTSKIPLLNQKG 265
Query: 325 GSHKT---SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
G + SL+ LAK+ L ++IQ GH S EDAR MEL
Sbjct: 266 GFPENVAISLKRLAKELLHKDIQVGKSGHCSVEDARTTMEL 306
>UNIPROTKB|H9L3P2 [details] [associations]
symbol:H9L3P2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AADN02034596 EMBL:AADN02034597
Ensembl:ENSGALT00000040831 OMA:PTEPIVD Uniprot:H9L3P2
Length = 328
Score = 244 (91.0 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 64/161 (39%), Positives = 92/161 (57%)
Query: 211 PYEILALDCEMCYTNEG---LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P +++A+DCEM T G L R ++V +G VL D V+P+ IVDY TR+SGI +
Sbjct: 149 PSKLVAIDCEMVGTGPGGCTSSLARCSIVGYEGDVLYDSYVRPTEPIVDYRTRWSGIRKK 208
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG--LVIDTAVL-YKHPQG 324
+ K Q E LK++ + ++VGH++ ND ALK SH L DT+ + + +G
Sbjct: 209 HMVNAVPFCK-AQREILKILSGK-VVVGHAVHNDFKALKYSHPKELTRDTSKIPLLNQKG 266
Query: 325 GSHKT---SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
G + SL+ LAK+ L ++IQ GH S EDAR MEL
Sbjct: 267 GFPENVAISLKRLAKELLHKDIQVGKSGHCSVEDARTTMEL 307
>UNIPROTKB|F1SRT3 [details] [associations]
symbol:AEN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005654
GO:GO:0005730 GO:GO:0042771 GO:GO:0003676 GO:GO:0010212
GO:GO:0004527 OMA:HKRKSRQ InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:FP017226 RefSeq:XP_003121906.1
UniGene:Ssc.43796 Ensembl:ENSSSCT00000005624 GeneID:100522657
KEGG:ssc:100522657 Uniprot:F1SRT3
Length = 325
Score = 244 (91.0 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 68/164 (41%), Positives = 90/164 (54%)
Query: 208 GSSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGI 264
G P + +A+DCEM T G EL R ++V G VL DK ++P IVDY TR+SGI
Sbjct: 104 GPLPSKCVAIDCEMVGTGPRGRVSELARCSVVSYYGDVLYDKYIRPEMPIVDYRTRWSGI 163
Query: 265 THEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTAVLYKH- 321
T + + + Q+E LKL+ K ++VGH+L ND ALK H G DT +
Sbjct: 164 TRQHMRKAIP-FQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRGQTRDTTYVPNLL 221
Query: 322 PQGGSH---KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
Q G H + SL+ LA + L ++IQ GH S EDA AMEL
Sbjct: 222 SQPGLHTRTRVSLKDLALQLLHKKIQVGQHGHSSVEDAVTAMEL 265
>ASPGD|ASPL0000071877 [details] [associations]
symbol:AN5013 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:BN001303 EMBL:AACD01000084 GO:GO:0006364
RefSeq:XP_662617.1 ProteinModelPortal:Q5B367 GeneID:2872816
KEGG:ani:AN5013.2 HOGENOM:HOG000198400 OMA:FDCEMGY
OrthoDB:EOG4JMBZF Uniprot:Q5B367
Length = 638
Score = 198 (74.8 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 45/86 (52%), Positives = 56/86 (65%)
Query: 286 LVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGG-SHKTSLRVLAKKFLSREIQ 344
L+ T L+GH+++NDL A +I H VIDTA+LY HP GG ++ SLR LAKK L REIQ
Sbjct: 503 LLTPSTPLIGHAIDNDLNACRIIHPTVIDTAILYPHPGGGLPYRMSLRTLAKKHLDREIQ 562
Query: 345 QSGF----GHDSTEDARAAMELALLK 366
G GHDS EDA A +L +K
Sbjct: 563 TGGASGKQGHDSVEDALATGDLVRVK 588
Score = 118 (46.6 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 215 LALDCEMCYTNEGLELTRVTLVDI-KGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
+ DCEM YT G+EL R+T V +G+ +LD LV+P ++D N+R+SG+ E
Sbjct: 408 ICFDCEMGYTTLGMELIRLTAVSWPEGKKVLDVLVRPLGEVLDLNSRFSGVFPE 461
>UNIPROTKB|Q66UW5 [details] [associations]
symbol:Isg20 "Interferon-stimulated gene 20 kDa protein"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008859 "exoribonuclease II activity" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005634
GO:GO:0046872 GO:GO:0045087 GO:GO:0051607 GO:GO:0003723
GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006364
GO:GO:0008859 CTD:3669 HOVERGEN:HBG052149 KO:K12579 EMBL:AY702647
RefSeq:NP_001005351.2 UniGene:Ssc.42771 ProteinModelPortal:Q66UW5
SMR:Q66UW5 GeneID:448855 KEGG:ssc:448855 Uniprot:Q66UW5
Length = 181
Score = 242 (90.2 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 61/158 (38%), Positives = 92/158 (58%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
E++A+DCEM E L R +LV++ G VL DK ++P I DY TR SG+T + +
Sbjct: 6 EVVAMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHMV 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA---VLYKHPQ-G 324
G T + E L+L+ K ++VGH L++D ALK ++ + DT+ +L++ +
Sbjct: 66 GATP-FAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMNRYTIYDTSTDMLLWREAKLD 123
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ SLRVL ++ L + IQ S GH S EDA+A MEL
Sbjct: 124 HCRRVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMEL 161
>UNIPROTKB|Q8WTP8 [details] [associations]
symbol:AEN "Apoptosis-enhancing nuclease" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010212 "response to ionizing radiation"
evidence=IDA] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005654 GO:GO:0005730
GO:GO:0042771 GO:GO:0003676 GO:GO:0010212 GO:GO:0004527
EMBL:AF327352 EMBL:AC013489 EMBL:CH471101 EMBL:BC005164
EMBL:BC014407 EMBL:BC020988 EMBL:AK022546 IPI:IPI00074083
IPI:IPI00141525 RefSeq:NP_073604.3 UniGene:Hs.436102
ProteinModelPortal:Q8WTP8 SMR:Q8WTP8 STRING:Q8WTP8
PhosphoSite:Q8WTP8 DMDM:296434390 PRIDE:Q8WTP8 DNASU:64782
Ensembl:ENST00000332810 Ensembl:ENST00000379231 GeneID:64782
KEGG:hsa:64782 UCSC:uc002bmt.2 CTD:64782 GeneCards:GC15P089164
H-InvDB:HIX0012556 HGNC:HGNC:25722 HPA:HPA048599 MIM:610177
neXtProt:NX_Q8WTP8 PharmGKB:PA162375720 eggNOG:COG0847
HOGENOM:HOG000182422 HOVERGEN:HBG100435 OMA:HKRKSRQ
OrthoDB:EOG4P8FJM PhylomeDB:Q8WTP8 GenomeRNAi:64782 NextBio:66818
ArrayExpress:Q8WTP8 Bgee:Q8WTP8 CleanEx:HS_AEN
Genevestigator:Q8WTP8 InterPro:IPR013520 SUPFAM:SSF53098
Uniprot:Q8WTP8
Length = 325
Score = 241 (89.9 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 68/171 (39%), Positives = 91/171 (53%)
Query: 204 PAP---FGSSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDY 257
PAP G P + +A+DCEM T G EL R ++V G VL DK ++P I DY
Sbjct: 97 PAPGKASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADY 156
Query: 258 NTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDT 315
TR+SGIT + + + Q+E LKL+ K ++VGH+L ND ALK H DT
Sbjct: 157 RTRWSGITRQHMRKAVP-FQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDT 214
Query: 316 AVLYKH-PQGGSH---KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ + G H + SL+ LA + L ++IQ GH S EDA AMEL
Sbjct: 215 TYVPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>UNIPROTKB|Q5REE2 [details] [associations]
symbol:AEN "Apoptosis-enhancing nuclease" species:9601
"Pongo abelii" [GO:0004527 "exonuclease activity" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0010212 "response to ionizing radiation"
evidence=ISS] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=ISS]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005654 GO:GO:0005730 GO:GO:0042771 GO:GO:0003676
GO:GO:0010212 GO:GO:0004527 CTD:64782 HOGENOM:HOG000182422
HOVERGEN:HBG100435 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:CR857587
RefSeq:NP_001124869.1 UniGene:Pab.10699 ProteinModelPortal:Q5REE2
SMR:Q5REE2 GeneID:100171731 KEGG:pon:100171731 Uniprot:Q5REE2
Length = 325
Score = 239 (89.2 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 70/172 (40%), Positives = 92/172 (53%)
Query: 204 PAP---FGSSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDY 257
PAP G P + +A+DCEM T G EL R ++V G VL DK ++P IVDY
Sbjct: 97 PAPGKASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDY 156
Query: 258 NTRYSGITHE-MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVID 314
TR+SGIT + M + + Q+E LKL+ K ++VGH+L ND ALK H D
Sbjct: 157 RTRWSGITRQHMCKAIPFQVA--QKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRD 213
Query: 315 TAVLYKHPQGGS-H---KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
T + S H + SL+ LA + L ++IQ GH S EDA AMEL
Sbjct: 214 TTYVPNFLSEPSLHIRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>UNIPROTKB|H3BM72 [details] [associations]
symbol:LOC81691 "Protein LOC81691" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR012337 Pfam:PF00929 GO:GO:0003676 EMBL:AC004381
InterPro:IPR013520 SUPFAM:SSF53098 Ensembl:ENST00000566276
Bgee:H3BM72 Uniprot:H3BM72
Length = 212
Score = 238 (88.8 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 48/94 (51%), Positives = 68/94 (72%)
Query: 209 SSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEM 268
+SP + LDCEMC T++G ELTR++LV G ++D+LVKP N I+DY T +SGIT ++
Sbjct: 121 NSP--LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKI 178
Query: 269 LSGVTTSLKDIQEEFLKLVYKETILVGHSLENDL 302
L+ VTT LKD+Q + L+ + +LVGHSL+ DL
Sbjct: 179 LNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDL 212
>UNIPROTKB|F8WG03 [details] [associations]
symbol:Aen "Apoptosis-enhancing nuclease" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 RGD:1305051 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 IPI:IPI00949441
Ensembl:ENSRNOT00000024962 OMA:GMVPREV Uniprot:F8WG03
Length = 355
Score = 249 (92.7 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 72/177 (40%), Positives = 94/177 (53%)
Query: 198 GFLSTVPAPF---GSSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPS 251
G S P P S P + +A+DCEM T +G EL R ++V G VL DK ++P
Sbjct: 109 GLCSKRPVPREAPSSGPSKYVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPE 168
Query: 252 NAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH-G 310
IVDY TR+SGIT + + + Q+E LKL+ K ++VGH+L ND ALK H G
Sbjct: 169 MPIVDYRTRWSGITRQHMHKAIP-FQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPG 226
Query: 311 LVI-DTAV---LYKHPQGGSH-KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
I DT L P + + SL+ LA L ++IQ GH S EDA AMEL
Sbjct: 227 SQIRDTTYVPNLLSQPSSLTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMEL 283
>UNIPROTKB|E1C018 [details] [associations]
symbol:AEN "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005654
GO:GO:0005730 GO:GO:0042771 GO:GO:0003676 GO:GO:0010212
GO:GO:0004527 OMA:HKRKSRQ InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AADN02041516 IPI:IPI00577225
ProteinModelPortal:E1C018 Ensembl:ENSGALT00000010894
NextBio:20819091 Uniprot:E1C018
Length = 301
Score = 231 (86.4 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 63/161 (39%), Positives = 88/161 (54%)
Query: 211 PYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P + +A+DCEM T G EL R ++V G V+ DK V P +VD+ TR+SGIT
Sbjct: 95 PNKYVAIDCEMVGTGPRGRQSELARCSIVSYDGDVIYDKYVLPLLPVVDFRTRWSGITKR 154
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTA-VLYKHPQG 324
+ + QEE LK++ K+ I+VGH++ ND ALK H DT+ + + +
Sbjct: 155 HMESAIP-FRAAQEEILKIL-KDRIVVGHAIHNDFQALKYFHPKERTRDTSRIPLLNQRA 212
Query: 325 G---SHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
G SL+ LA+ L ++IQ GH S EDAR AMEL
Sbjct: 213 GLPPGANASLKSLARHLLQKKIQVGCKGHSSVEDARTAMEL 253
>FB|FBgn0036405 [details] [associations]
symbol:CG6833 species:7227 "Drosophila melanogaster"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:AE014296 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AY060760 RefSeq:NP_001189105.1
RefSeq:NP_648689.1 UniGene:Dm.3871 SMR:Q9VUC3 IntAct:Q9VUC3
STRING:Q9VUC3 EnsemblMetazoa:FBtr0075774 EnsemblMetazoa:FBtr0302433
GeneID:39559 KEGG:dme:Dmel_CG6833 UCSC:CG6833-RA
FlyBase:FBgn0036405 InParanoid:Q9VUC3 OMA:GQEIQTG OrthoDB:EOG4PK0R4
GenomeRNAi:39559 NextBio:814273 Uniprot:Q9VUC3
Length = 290
Score = 225 (84.3 bits), Expect = 7.7e-18, P = 7.7e-18
Identities = 66/156 (42%), Positives = 85/156 (54%)
Query: 214 ILALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
ILA+DCEM L RV++V+ G VLLDK VKP + DY T SGI + ++
Sbjct: 117 ILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDKYVKPRKEVTDYRTSVSGIRPQDIA 176
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYKHPQ----G 324
+Q E +KL++ ILVGH L NDL L I H + DT+ YK P
Sbjct: 177 N-GEDFAAVQNEVMKLIHGR-ILVGHGLRNDLAVLGIRHPFHDIRDTSH-YK-PLCKLIS 232
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAM 360
+H SL+ L K L +EIQ +G H+S EDARAAM
Sbjct: 233 NTHTPSLKRLTKAVLGQEIQ-TG-EHNSVEDARAAM 266
>MGI|MGI:1915298 [details] [associations]
symbol:Aen "apoptosis enhancing nuclease" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0010212 "response to
ionizing radiation" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=ISO]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
MGI:MGI:1915298 GO:GO:0005654 GO:GO:0005730 GO:GO:0042771
GO:GO:0003676 GO:GO:0010212 GO:GO:0004527 CTD:64782 eggNOG:COG0847
HOGENOM:HOG000182422 HOVERGEN:HBG100435 OMA:HKRKSRQ
OrthoDB:EOG4P8FJM InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AK090056
EMBL:AK012555 EMBL:AK031972 EMBL:AK165708 EMBL:AK166806
EMBL:AK167042 EMBL:AK167658 EMBL:BC022614 IPI:IPI00857428
IPI:IPI00990849 RefSeq:NP_001156411.1 RefSeq:NP_080807.3
UniGene:Mm.34109 ProteinModelPortal:Q9CZI9 SMR:Q9CZI9
PhosphoSite:Q9CZI9 PRIDE:Q9CZI9 Ensembl:ENSMUST00000107421
Ensembl:ENSMUST00000107423 Ensembl:ENSMUST00000107425 GeneID:68048
KEGG:mmu:68048 UCSC:uc009hxp.1 UCSC:uc009hxq.1
GeneTree:ENSGT00520000055542 InParanoid:Q9CZI9 NextBio:326308
Bgee:Q9CZI9 Genevestigator:Q9CZI9 Uniprot:Q9CZI9
Length = 336
Score = 234 (87.4 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 65/161 (40%), Positives = 86/161 (53%)
Query: 211 PYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P + +A+DCEM T +G EL R ++V G VL DK ++P IVDY TR+SGIT +
Sbjct: 106 PIKCVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQ 165
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTAV---LYKHP 322
+ + Q+E LKL+ K ++VGH+L ND ALK H DT L P
Sbjct: 166 HMHKAIP-FQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLSQP 223
Query: 323 QGGSH-KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ SL+ LA L ++IQ GH S EDA AMEL
Sbjct: 224 SSLIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMEL 264
>RGD|1306407 [details] [associations]
symbol:Isg20 "interferon stimulated exonuclease gene 20"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=ISO] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 RGD:1306407
GO:GO:0016605 GO:GO:0003676 GO:GO:0009615 GO:GO:0006401
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 GO:GO:0000175
GO:GO:0000738 GO:GO:0008310 CTD:3669 HOVERGEN:HBG052149 KO:K12579
OrthoDB:EOG4M91SN EMBL:BC086557 IPI:IPI00364365
RefSeq:NP_001008510.1 UniGene:Rn.16103 SMR:Q5RJP5
Ensembl:ENSRNOT00000024826 GeneID:293052 KEGG:rno:293052
NextBio:635263 Genevestigator:Q5RJP5 Uniprot:Q5RJP5
Length = 181
Score = 220 (82.5 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 64/174 (36%), Positives = 99/174 (56%)
Query: 210 SPYEILALDCEMCYTN-EGLE-LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
SP E++A+DCEM + + L R ++V++ VL DK ++P I DY T+ SGIT +
Sbjct: 4 SP-EVVAMDCEMVGLGPQRVSGLARCSIVNVHSAVLYDKYIQPEGEITDYRTQVSGITPQ 62
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA--VLYKHPQ 323
++ T + + E L+L+ K ++VGH L++D ALK + + DT+ +L H +
Sbjct: 63 HMARATP-FAEARLEILQLL-KGKLVVGHDLKHDFSALKEDMRKYTIYDTSTDMLLWH-E 119
Query: 324 GGSH---KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTK 374
H + SLR+L K+ L + IQ + GH S EDARA MEL KI +R +
Sbjct: 120 AKLHCYSRVSLRLLCKRLLHKSIQNNWRGHCSVEDARATMEL--YKISQRLRAQ 171
>UNIPROTKB|F1RHI9 [details] [associations]
symbol:ISG20L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005634 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:GTGPKGH EMBL:CU582900
RefSeq:XP_001924782.1 UniGene:Ssc.54513 Ensembl:ENSSSCT00000007088
GeneID:100157573 KEGG:ssc:100157573 Uniprot:F1RHI9
Length = 343
Score = 233 (87.1 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 80/236 (33%), Positives = 118/236 (50%)
Query: 138 KRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQP 197
K +AV +T + PSQK S V++ E +P ++ T K+ N N
Sbjct: 94 KPSAVPWLTPA--PSQKAG-SVVAKVDLLGEFQSALPKIKSHPTRPRKKGSQKNAPQNST 150
Query: 198 GFLSTVPAPFGSS--PYEILALDCEMCYTN-EG--LELTRVTLVDIKGQVLLDKLVKPSN 252
S S P +++A+DCEM T +G L R ++V+ G VL D+ + P
Sbjct: 151 QAHSEKKYSGASQKGPSKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPC 210
Query: 253 AIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--G 310
IVDY TR+SGI + + T K + + LK++ + I+VGH++ ND AL+ H
Sbjct: 211 HIVDYRTRWSGIRKQHMVNATP-FKIARSQILKILTGK-IVVGHAIHNDFKALQYFHPKS 268
Query: 311 LVIDTA---VLYKHPQGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
L DT+ +L + + T SL+ L KK L R+IQ GH S EDA+A MEL
Sbjct: 269 LTRDTSHIPLLNRKADCPENATMSLKRLTKKLLDRDIQVGKSGHSSVEDAQATMEL 324
>RGD|1359413 [details] [associations]
symbol:Isg20l2 "interferon stimulated exonuclease gene 20-like
2" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=ISO] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 RGD:1359413 GO:GO:0005730 GO:GO:0003676
GO:GO:0042254 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
HOGENOM:HOG000182422 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 CTD:81875 HOVERGEN:HBG107986
OrthoDB:EOG4H4641 EMBL:BC079314 IPI:IPI00373225
RefSeq:NP_001007742.1 UniGene:Rn.56954 ProteinModelPortal:Q6AXU3
PRIDE:Q6AXU3 Ensembl:ENSRNOT00000015471 GeneID:361977
KEGG:rno:361977 UCSC:RGD:1359413 InParanoid:Q6AXU3 OMA:ESGARTF
NextBio:678262 Genevestigator:Q6AXU3 Uniprot:Q6AXU3
Length = 369
Score = 226 (84.6 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 209 SSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGIT 265
S P +++A+DCEM T +G L R ++V+ G VL D+ ++P IVDY TR+SGI
Sbjct: 190 SLPRKMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIR 249
Query: 266 H-EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA---VLY 319
M++ T K + + LK++ + ++VGH++ ND AL+ H L DT+ +L
Sbjct: 250 KCHMVNA--TPFKTARSQILKILSGK-VVVGHAIHNDYKALQYFHPKSLTRDTSQIPLLN 306
Query: 320 KHPQGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ + T SL+ L KK LSR+IQ GH S EDA+A +EL
Sbjct: 307 RKADCPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLEL 350
Score = 44 (20.5 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 126 TIDGLLTCKLKRKRNAVDSMTKSTQPSQKE 155
+I +L+C LK+K+ A S S Q K+
Sbjct: 68 SISKILSC-LKKKKEAAASKRDSEQSKDKK 96
>UNIPROTKB|Q2YDK1 [details] [associations]
symbol:ISG20L2 "Interferon-stimulated 20 kDa
exonuclease-like 2" species:9913 "Bos taurus" [GO:0005730
"nucleolus" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0003676 GO:GO:0042254 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 EMBL:BC110186
IPI:IPI00711321 RefSeq:NP_001039682.1 UniGene:Bt.80589
ProteinModelPortal:Q2YDK1 SMR:Q2YDK1 PRIDE:Q2YDK1
Ensembl:ENSBTAT00000001989 GeneID:515980 KEGG:bta:515980 CTD:81875
HOVERGEN:HBG107986 InParanoid:Q2YDK1 OMA:GTGPKGH OrthoDB:EOG4H4641
NextBio:20872080 Uniprot:Q2YDK1
Length = 349
Score = 226 (84.6 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 62/161 (38%), Positives = 92/161 (57%)
Query: 211 PYEILALDCEMCYTN-EG--LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P +++A+DCEM T +G L R ++V+ G VL D+ + P IVDY TR+SGI +
Sbjct: 172 PGKMVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQ 231
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA---VLYKHP 322
+ T K + + LK++ + I+VGH++ ND AL+ H L DT+ +L +
Sbjct: 232 HMVNATP-FKIARNQILKILAGK-IVVGHAIHNDFKALQYIHPKSLTRDTSHIPLLNRKA 289
Query: 323 QGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ T SL+ L KK L+R+IQ GH S EDA+A MEL
Sbjct: 290 DCPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMEL 330
>UNIPROTKB|G4N4M9 [details] [associations]
symbol:MGG_06005 "RNA exonuclease 3" species:242507
"Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CM001233 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
RefSeq:XP_003711851.1 ProteinModelPortal:G4N4M9
EnsemblFungi:MGG_06005T0 GeneID:2683970 KEGG:mgr:MGG_06005
Uniprot:G4N4M9
Length = 701
Score = 166 (63.5 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 275 SLKDIQEEFL-KLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRV 333
S ++ + L L+ ++T L+GH LENDL +++ H +++DT +LY H +G + LR+
Sbjct: 570 SSPEVARDLLFSLISRDTPLMGHGLENDLNCMRVVHPVIVDTVLLYPHNRGLPIRNGLRM 629
Query: 334 LAKKFLSREIQ---QSG--FGHDSTEDARAAMELALLKIR 368
L + L+ IQ G GHDS EDARAA +L K R
Sbjct: 630 LMQTILNTRIQVEPAEGQLAGHDSAEDARAAGDLVRWKTR 669
Score = 111 (44.1 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 215 LALDCEMCYTNEGLELTRVTLVDI-KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
+ DCEM YT +G E+ R T G+ L+D LV+P ++D N++YSG+ E L+
Sbjct: 486 VCFDCEMGYTVKGFEMIRFTATSWPSGEELMDVLVRPFGEVLDLNSQYSGVWPEDLA 542
Score = 47 (21.6 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 174 PFPITYYTLTEKQLEDNN-YCYNQPGFLSTVPAP 206
PF +Y T +Q +NN + + +ST PAP
Sbjct: 155 PFSSSYSTPKSQQQANNNPFSTRKHSPVSTTPAP 188
>MGI|MGI:2140076 [details] [associations]
symbol:Isg20l2 "interferon stimulated exonuclease gene
20-like 2" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 MGI:MGI:2140076
GO:GO:0005730 GO:GO:0003676 GO:GO:0042254 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 HOGENOM:HOG000182422
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00520000055542
KO:K01175 CTD:81875 HOVERGEN:HBG107986 OrthoDB:EOG4H4641
EMBL:AK053778 EMBL:AK155979 EMBL:BC098326 IPI:IPI00222565
RefSeq:NP_808331.1 UniGene:Mm.45744 ProteinModelPortal:Q3U1G5
SMR:Q3U1G5 PhosphoSite:Q3U1G5 PaxDb:Q3U1G5 PRIDE:Q3U1G5
Ensembl:ENSMUST00000055984 GeneID:229504 KEGG:mmu:229504
UCSC:uc008ptj.1 InParanoid:Q4KMV7 NextBio:379467 Bgee:Q3U1G5
CleanEx:MM_ISG20L2 Genevestigator:Q3U1G5 Uniprot:Q3U1G5
Length = 368
Score = 224 (83.9 bits), Expect = 6.3e-16, P = 6.3e-16
Identities = 80/231 (34%), Positives = 121/231 (52%)
Query: 146 TKSTQP--SQKENCST--VSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLS 201
TKSTQ S+K++ +ENS+ A+ KD + +K N+
Sbjct: 129 TKSTQKKGSKKKSLKKKIATENSTQAQS-KDKG---SKKKPLKKNAVPNSTQARSEDKCP 184
Query: 202 TVPAPFGSSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYN 258
TVP + P +++A+DCEM T +G L R ++V+ G VL D+ V P IV+Y
Sbjct: 185 TVPQ---NLPGKMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYR 241
Query: 259 TRYSGITH-EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDT 315
TR+SGI M++ T K + + LK++ + +++GH++ ND AL+ H L DT
Sbjct: 242 TRWSGIRKCHMVNA--TPFKTARSQILKILSGK-VVIGHAIHNDYKALQYFHPKSLTRDT 298
Query: 316 A---VLYKHPQGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ +L + + T SL+ L KK LSR+IQ GH S EDA+A MEL
Sbjct: 299 SRIPLLNRKADCPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMEL 349
>UNIPROTKB|E2QS77 [details] [associations]
symbol:ISG20L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005634
GO:GO:0003676 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 CTD:81875 OMA:GTGPKGH
EMBL:AAEX03005314 RefSeq:XP_547530.2 Ensembl:ENSCAFT00000026521
GeneID:490409 KEGG:cfa:490409 NextBio:20863435 Uniprot:E2QS77
Length = 348
Score = 222 (83.2 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 62/162 (38%), Positives = 92/162 (56%)
Query: 210 SPYEILALDCEMCYTN-EG--LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITH 266
+P +++A+DCEM T +G L R ++V+ G VL D+ + P IVDY TR+SGI
Sbjct: 170 TPKKMVAIDCEMVGTGPKGHVSSLARCSIVNYHGDVLYDEYILPPCHIVDYRTRWSGIRK 229
Query: 267 EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA---VLYKH 321
+ + T K + + LK++ + I+VGH++ ND AL+ H L DT+ L +
Sbjct: 230 QHMVNATP-FKVARGQILKILTGK-IVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRK 287
Query: 322 PQGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ T SL+ L KK L+R+IQ GH S EDA+A MEL
Sbjct: 288 ADCPENATMSLKSLTKKLLNRDIQVGKSGHSSVEDAQATMEL 329
>UNIPROTKB|Q9H9L3 [details] [associations]
symbol:ISG20L2 "Interferon-stimulated 20 kDa
exonuclease-like 2" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0005634 GO:GO:0005730 GO:GO:0003676
GO:GO:0042254 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
HOGENOM:HOG000182422 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:CH471121 KO:K01175 EMBL:AL590666 CTD:81875 HOVERGEN:HBG107986
OMA:GTGPKGH OrthoDB:EOG4H4641 EMBL:AY391837 EMBL:AK022733
EMBL:BC000575 IPI:IPI00008963 RefSeq:NP_112242.1 UniGene:Hs.301904
ProteinModelPortal:Q9H9L3 IntAct:Q9H9L3 MINT:MINT-1457372
STRING:Q9H9L3 PhosphoSite:Q9H9L3 DMDM:42559527 SWISS-2DPAGE:Q9H9L3
PaxDb:Q9H9L3 PeptideAtlas:Q9H9L3 PRIDE:Q9H9L3 DNASU:81875
Ensembl:ENST00000313146 Ensembl:ENST00000368219 GeneID:81875
KEGG:hsa:81875 UCSC:uc001fps.1 GeneCards:GC01M156691
HGNC:HGNC:25745 HPA:HPA028005 MIM:611930 neXtProt:NX_Q9H9L3
PharmGKB:PA142671650 InParanoid:Q9H9L3 PhylomeDB:Q9H9L3
ChiTaRS:ISG20L2 GenomeRNAi:81875 NextBio:72218 Bgee:Q9H9L3
CleanEx:HS_ISG20L2 Genevestigator:Q9H9L3 GermOnline:ENSG00000143319
Uniprot:Q9H9L3
Length = 353
Score = 221 (82.9 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 62/161 (38%), Positives = 91/161 (56%)
Query: 211 PYEILALDCEMCYTN-EG--LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P +++A+DCEM T +G L R ++V+ G VL D+ + P IVDY TR+SGI +
Sbjct: 176 PRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQ 235
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA---VLYKHP 322
+ T K + + LK++ + I+VGH++ ND AL+ H L DT+ L +
Sbjct: 236 HMVNATP-FKIARGQILKILTGK-IVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKA 293
Query: 323 QGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ T SL+ L KK L+R+IQ GH S EDA+A MEL
Sbjct: 294 DCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
>WB|WBGene00012465 [details] [associations]
symbol:Y17G7B.12 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 HOGENOM:HOG000182422
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00520000055542
EMBL:AL023828 PIR:T26504 RefSeq:NP_496560.1
ProteinModelPortal:Q9XXI3 SMR:Q9XXI3 STRING:Q9XXI3 PaxDb:Q9XXI3
EnsemblMetazoa:Y17G7B.12.1 EnsemblMetazoa:Y17G7B.12.2 GeneID:174842
KEGG:cel:CELE_Y17G7B.12 UCSC:Y17G7B.12 CTD:174842
WormBase:Y17G7B.12 InParanoid:Q9XXI3 OMA:TAKCTIL NextBio:885742
Uniprot:Q9XXI3
Length = 269
Score = 199 (75.1 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 58/161 (36%), Positives = 88/161 (54%)
Query: 213 EILALDCEMCYTNEGLE-----LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
+++A+DCE Y G+ L R+++V+ G+++ DK VKP+ + D+ T SGI E
Sbjct: 101 KVIAIDCE--YVGAGMGGTTDILARISIVNELGKIVYDKFVKPTEKVTDFRTAVSGIRPE 158
Query: 268 -MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA--VLYKHP 322
M+ + Q E KL+ I++GH++ ND LK++H L DTA + K+
Sbjct: 159 NMIKAIP--FDRAQTEVSKLI-DGRIVIGHAVHNDFRVLKLNHIRKLTRDTAKCTILKN- 214
Query: 323 QGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
H T SL+ LAK+ L EIQ+ HDS DAR A+ L
Sbjct: 215 MANHHGTPSLKKLAKEVLGIEIQRGE--HDSITDARVALRL 253
>ASPGD|ASPL0000070457 [details] [associations]
symbol:AN4357 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR006055 InterPro:IPR007087 InterPro:IPR012337
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00479 Pfam:PF00929 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:BN001303 InterPro:IPR022755 Pfam:PF12171
EMBL:AACD01000075 RefSeq:XP_661961.1 ProteinModelPortal:Q5B523
EnsemblFungi:CADANIAT00006101 GeneID:2872156 KEGG:ani:AN4357.2
OrthoDB:EOG4B5SDQ Uniprot:Q5B523
Length = 560
Score = 225 (84.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 64/188 (34%), Positives = 102/188 (54%)
Query: 199 FLSTVPAPF-GSSPYEILALDCEMC-----YTNEGLELTRVTLVD-IKGQVLLDKLVKPS 251
F + P+P ++ + + LDCEM +E E+ R+ VD + G+VL++ V+P+
Sbjct: 352 FAQSRPSPAKNANARQAVVLDCEMVGVVGPNNSEVSEVVRLAAVDFLSGEVLVNTFVEPA 411
Query: 252 --NAIVDYNTRYSGITHEMLS-----GVTTSLKDIQEEFLKL-VYKETILVGHSLENDLL 303
++++ TR SG+ +LS G T + + L + V K+TIL+GHSL NDL
Sbjct: 412 ADQRVINWRTRVSGVNKSLLSEMKKQGQTVQGWEAARDLLWMFVDKQTILIGHSLHNDLA 471
Query: 304 ALKISHGLVIDTAVLYKHPQGGSHKTSLRV--LAKKFLSREIQQSGFGHDSTEDARAAME 361
L + H ++D+A+L + G+ + RV LAK F +IQ +G GHD ED AA E
Sbjct: 472 VLGMVHQRIVDSAILTRDAVAGAKEDCARVRKLAKTFFELDIQ-TGKGHDCLEDTFAARE 530
Query: 362 LALLKIRN 369
+ L + N
Sbjct: 531 VVLWCLGN 538
Score = 37 (18.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 14/72 (19%), Positives = 28/72 (38%)
Query: 148 STQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQPGFLSTVPAPF 207
S QP E ++ ++ K +P P+ + L +N+ + G +++P
Sbjct: 181 SAQPGDGERKDELALHTIVLPQSK-VPVPVPVPLSKSESLVQHNWKESWSGSWTSIPLAE 239
Query: 208 GSSPYEILALDC 219
S +L C
Sbjct: 240 RESMLRLLETKC 251
>TAIR|locus:2086320 [details] [associations]
symbol:AT3G15080 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009165 "nucleotide biosynthetic process"
evidence=RCA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 eggNOG:COG0847 HOGENOM:HOG000182422
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AY087954 EMBL:BT024904
EMBL:EU682310 EMBL:AK228883 IPI:IPI00522165 RefSeq:NP_566499.1
UniGene:At.39112 ProteinModelPortal:Q8LAA0 STRING:Q8LAA0
PaxDb:Q8LAA0 PRIDE:Q8LAA0 EnsemblPlants:AT3G15080.1 GeneID:820738
KEGG:ath:AT3G15080 TAIR:At3g15080 InParanoid:Q8LAA0 OMA:CPIEDAR
PhylomeDB:Q8LAA0 ProtClustDB:CLSN2688390 Genevestigator:Q8LAA0
Uniprot:Q8LAA0
Length = 275
Score = 200 (75.5 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 62/163 (38%), Positives = 87/163 (53%)
Query: 204 PAPFGSSPYEILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRY 261
P SS + +A+DCEM ++G + L RVTLV+ G VL D+ V+P +VD+ T
Sbjct: 73 PVNDDSSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDEFVRPVEHVVDFRTSI 132
Query: 262 SGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLY 319
SGI L + Q + +L+ K ILVGH+L NDL AL ++H + DT
Sbjct: 133 SGIRPRDLRKAK-DFRVAQTKVAELI-KGKILVGHALHNDLKALLLTHPKKDIRDTGEYQ 190
Query: 320 KHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+G + K SL+ LA + L +IQ H +DARAAM L
Sbjct: 191 PFLKGKTRK-SLKHLASEILGADIQNGE--HCPIDDARAAMML 230
>UNIPROTKB|F1N5B5 [details] [associations]
symbol:REXO4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005730 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:QKEVAEM EMBL:DAAA02032345
EMBL:DAAA02032346 IPI:IPI01000627 Ensembl:ENSBTAT00000026283
Uniprot:F1N5B5
Length = 402
Score = 214 (80.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 66/172 (38%), Positives = 97/172 (56%)
Query: 206 PFGSSPYEILALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYS 262
PFG + LA+DCEM EG E + RV+LV+ G+ + DK VKP+ + DY T S
Sbjct: 218 PFGGLT-KALAMDCEMVGVGPEGEESVVARVSLVNQHGRCVYDKHVKPTQPVTDYRTAVS 276
Query: 263 GITH-EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLY 319
G+ ++ G + +Q E +L+ K ILVGH+L NDL AL + H + DT Y
Sbjct: 277 GVRPADLAQG--EEFEVVQREVAELL-KGRILVGHALHNDLKALFLGHPKKKIRDTQK-Y 332
Query: 320 K--HPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369
K Q S + SL++LA++ L ++QQ+ H S +DA+ AM L +L R+
Sbjct: 333 KPFRTQVKSGRPSLKLLAERILGIQVQQAE--HCSVQDAQVAMRLYVLVKRD 382
>CGD|CAL0003518 [details] [associations]
symbol:orf19.5220 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000027 "ribosomal large subunit
assembly" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 CGD:CAL0003518
Pfam:PF00929 GO:GO:0005634 GO:GO:0003676 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0006364 KO:K01175 EMBL:AACQ01000070 EMBL:AACQ01000071
RefSeq:XP_716289.1 RefSeq:XP_716353.1 ProteinModelPortal:Q5A3Q0
STRING:Q5A3Q0 GeneID:3641941 GeneID:3642012 KEGG:cal:CaO19.12687
KEGG:cal:CaO19.5220 Uniprot:Q5A3Q0
Length = 285
Score = 203 (76.5 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 75/256 (29%), Positives = 120/256 (46%)
Query: 126 TIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEK 185
T+ G ++ K+K + S T +T + ST ++ A K P+ Y T+
Sbjct: 28 TLKGKISKKVKASISEKLSTTNNTTTTTTTTTST-TDVVPIASSTKPTATPLEYTLWTQN 86
Query: 186 QLEDNNYCYNQPGFLSTVPAPFGSS----PYEILALDCEMC-YTNEGLE--LTRVTLVDI 238
+ ++ P +P S P + +A+DCE +G E L R+++++
Sbjct: 87 HTINVSHIPKTP---KPLPLSRNDSRKLDPGKYVAIDCEFVGIGKDGEESALARISIINY 143
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGI-THEMLSGVTTSLKDIQEEFLKLVYKETILVGHS 297
G VLLD V+P + D+ T SGI ++ M + K Q + ++L+ + ILVGH+
Sbjct: 144 YGVVLLDTYVRPQERVTDWRTWVSGIQSYHMQDAI--DFKTAQLKTMELINNK-ILVGHA 200
Query: 298 LENDLLALKISH--GLVIDTAVLYKHPQ-GGSHKTSLRVLAKKFLSREIQQSGFGHDSTE 354
+ NDL L +SH ++ DT K + G SL+ L K F+ +IQ H S E
Sbjct: 201 VNNDLDILFLSHPKSMIRDTCKFPKFREIAGGKSPSLKKLIKHFIQVDIQIGQ--HSSVE 258
Query: 355 DARAAMELALLKIRNV 370
DARA M L L R +
Sbjct: 259 DARATMLLFRLFKREI 274
>POMBASE|SPBC1604.09c [details] [associations]
symbol:SPBC1604.09c "exoribonuclease Rex4 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 PomBase:SPBC1604.09c Pfam:PF00929 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006364 KO:K01175 OMA:NDIPESQ
PIR:T39505 RefSeq:NP_596631.1 ProteinModelPortal:O94375
STRING:O94375 EnsemblFungi:SPBC1604.09c.1 GeneID:2540203
KEGG:spo:SPBC1604.09c OrthoDB:EOG4TB7M4 NextBio:20801335
Uniprot:O94375
Length = 260
Score = 194 (73.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 54/161 (33%), Positives = 88/161 (54%)
Query: 215 LALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVT 273
+A+DCEM + + L RV++V+ G V+ D V+P + D+ T SG+ +
Sbjct: 94 IAMDCEMVGVADDMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAP 153
Query: 274 TSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG--LVIDTAVLYKHPQGGSHKT-S 330
S + +Q E K++ +LVGH++ NDL L +SH ++ DT+ + + +T
Sbjct: 154 -SFEKVQAEVAKIL-DNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPG 211
Query: 331 LRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVM 371
L+ LA+ L R+IQ SG H S +DA+A MEL K++ M
Sbjct: 212 LKKLAEVILGRDIQ-SG-QHSSVQDAQATMEL-YKKVKKEM 249
>UNIPROTKB|Q9GZR2 [details] [associations]
symbol:REXO4 "RNA exonuclease 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=NAS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
EMBL:CH471090 GO:GO:0003700 GO:GO:0003676 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AL158826 KO:K01175 EMBL:AF295774 EMBL:AF273304 EMBL:AL136894
EMBL:AK025493 EMBL:AK314333 EMBL:BC009274 IPI:IPI00010653
IPI:IPI00513877 RefSeq:NP_065118.2 UniGene:Hs.438409
ProteinModelPortal:Q9GZR2 SMR:Q9GZR2 IntAct:Q9GZR2 STRING:Q9GZR2
PhosphoSite:Q9GZR2 DMDM:71153418 SWISS-2DPAGE:Q9GZR2 PaxDb:Q9GZR2
PRIDE:Q9GZR2 DNASU:57109 Ensembl:ENST00000371935
Ensembl:ENST00000371942 Ensembl:ENST00000445916
Ensembl:ENST00000453165 Ensembl:ENST00000454825
Ensembl:ENST00000562216 Ensembl:ENST00000568937
Ensembl:ENST00000569763 Ensembl:ENST00000570226 GeneID:57109
KEGG:hsa:57109 UCSC:uc004cdm.3 CTD:57109 GeneCards:GC09M136271
HGNC:HGNC:12820 HPA:HPA047006 MIM:602930 neXtProt:NX_Q9GZR2
PharmGKB:PA37414 HOGENOM:HOG000231626 HOVERGEN:HBG000999
InParanoid:Q9GZR2 OMA:QKEVAEM OrthoDB:EOG4VX263 PhylomeDB:Q9GZR2
GenomeRNAi:57109 NextBio:62959 ArrayExpress:Q9GZR2 Bgee:Q9GZR2
CleanEx:HS_REXO4 Genevestigator:Q9GZR2 GermOnline:ENSG00000148300
Uniprot:Q9GZR2
Length = 422
Score = 210 (79.0 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 63/158 (39%), Positives = 91/158 (57%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
LALDCEM +G E RV++V+ G+ + DK VKP+ + DY T SGI E L
Sbjct: 244 LALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQ 303
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYK--HPQGGSH 327
L+ +Q+E +++ K ILVGH+L NDL L + H + DT YK Q S
Sbjct: 304 -GEELEVVQKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQK-YKPFKSQVKSG 360
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
+ SLR+L++K L ++QQ+ H S +DA+AAM L ++
Sbjct: 361 RPSLRLLSEKILGLQVQQAE--HCSIQDAQAAMRLYVM 396
>UNIPROTKB|I3L751 [details] [associations]
symbol:REXO4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005730 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:QKEVAEM EMBL:FP565513
Ensembl:ENSSSCT00000028732 Uniprot:I3L751
Length = 421
Score = 209 (78.6 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 65/155 (41%), Positives = 88/155 (56%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
LALDCEM +G E L RV+LV+ G+ + DK VKP+ + DY T SGI E L+
Sbjct: 243 LALDCEMVGVGPQGDESMLARVSLVNQFGKCVYDKYVKPTQPVTDYRTAVSGIRPENLAQ 302
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYK--HPQGGSH 327
+ +Q+E L+ K ILVGH+L NDL L + H V DT Y+ Q S
Sbjct: 303 -GEEFEIVQKEVAALL-KGRILVGHALHNDLKVLFLGHPKKKVRDTQK-YRPFRSQVKSG 359
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ SL++LA+K L +QQ+ H S +DA+AAM L
Sbjct: 360 RPSLKLLAEKILGLPVQQAE--HCSVQDAQAAMRL 392
>ZFIN|ZDB-GENE-120215-216 [details] [associations]
symbol:si:ch73-209e20.4 "si:ch73-209e20.4"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
ZFIN:ZDB-GENE-120215-216 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00520000055542
KO:K01175 EMBL:FP243383 IPI:IPI00613534 RefSeq:XP_002665913.1
ProteinModelPortal:F1QJP9 Ensembl:ENSDART00000121769
GeneID:100333127 KEGG:dre:100333127 Bgee:F1QJP9 Uniprot:F1QJP9
Length = 418
Score = 205 (77.2 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 56/155 (36%), Positives = 87/155 (56%)
Query: 215 LALDCEMC---YTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
+A+DCEM Y E L RV+LV+ G+ + DK VKP+ + DY T SGI + +
Sbjct: 234 VAMDCEMVGVGYKGEDSILARVSLVNHFGKCIYDKYVKPTEKVTDYRTAVSGIRPDDIKN 293
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG--LVIDTAVLYK--HPQGGSH 327
+K +Q+E +++ K ILVGH++ NDL L + H ++ DT YK + S
Sbjct: 294 -GEDIKTVQKEVAQIL-KGRILVGHAIHNDLKILLLDHPKKMIRDTQ-RYKPFRQKVKSS 350
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ +LR L ++ L+ ++QQ H S +DA+A M L
Sbjct: 351 RPALRNLCRQILNVQVQQGE--HSSVQDAQATMRL 383
>ASPGD|ASPL0000065793 [details] [associations]
symbol:AN10955 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003676 GO:GO:0005622 EMBL:BN001304 GO:GO:0004527
HOGENOM:HOG000182422 InterPro:IPR013520 SUPFAM:SSF53098
ProteinModelPortal:C8VBH1 EnsemblFungi:CADANIAT00000588 OMA:KHMAEAR
Uniprot:C8VBH1
Length = 299
Score = 198 (74.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 62/169 (36%), Positives = 91/169 (53%)
Query: 208 GSSP-YEI---LALDCEMCYTNEGLE----LTRVTLVDIKGQVLLDKLVKPSNAIVDYNT 259
G SP EI +A+DCEM + L RV++V+ G + D V+P + D+ T
Sbjct: 94 GRSPNVEIGKYIAMDCEMVGIGPDPDNDSALARVSIVNYNGDQVYDSYVRPKEMVTDWRT 153
Query: 260 RYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAV 317
SGI + ++ SL+ +Q+E +++ + ILVGH+L NDL AL +SH + DT+
Sbjct: 154 HVSGILPKHMAEAR-SLEQVQKEVAEIL-EGRILVGHALRNDLDALLLSHPKRDIRDTS- 210
Query: 318 LYKHPQ----GGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
KHP G L++LA +FL IQ +G H S EDA+A M L
Sbjct: 211 --KHPPYRKVAGGGSPRLKILASEFLGLNIQ-AG-AHSSMEDAKATMLL 255
>SGD|S000005440 [details] [associations]
symbol:REX4 "Putative RNA exonuclease possibly involved in
ribosome biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0005622 "intracellular" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA;IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IGI]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 SGD:S000005440
Pfam:PF00929 GO:GO:0005730 EMBL:BK006948 GO:GO:0003676
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 GO:GO:0008408
GO:GO:0006364 KO:K01175 GO:GO:0000027 EMBL:Z74822 OrthoDB:EOG4TB7M4
PIR:S66773 RefSeq:NP_014561.1 ProteinModelPortal:Q08237 SMR:Q08237
DIP:DIP-5458N IntAct:Q08237 MINT:MINT-543211 STRING:Q08237
PaxDb:Q08237 EnsemblFungi:YOL080C GeneID:854075 KEGG:sce:YOL080C
CYGD:YOL080c OMA:ALMLSHP NextBio:975698 Genevestigator:Q08237
GermOnline:YOL080C Uniprot:Q08237
Length = 289
Score = 195 (73.7 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 56/155 (36%), Positives = 87/155 (56%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
+A+DCE EG E L R+++V+ G V+LD+ VKP +V++ T SGI E +
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA--VLYKHPQGGSH 327
T K+ Q++ ++ + ILVGH+L++DL AL +SH L+ DT+ + ++
Sbjct: 182 AIT-FKEAQKKTADIL-EGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGK 239
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
SL+ L ++ L IQ+ H S EDARA M L
Sbjct: 240 TPSLKKLTREVLKISIQEGE--HSSVEDARATMLL 272
>UNIPROTKB|F1PBR5 [details] [associations]
symbol:REXO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AAEX03006772
Ensembl:ENSCAFT00000031428 Uniprot:F1PBR5
Length = 411
Score = 201 (75.8 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 61/158 (38%), Positives = 89/158 (56%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
LA+DCEM +G E RV++V+ G+ + DK VKP+ + DY T SGI E L
Sbjct: 233 LAMDCEMVGAGPKGEESVAARVSIVNQYGKCVYDKYVKPTQPVTDYRTAVSGIRPENLKQ 292
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYK--HPQGGSH 327
+ +Q+E ++ K ILVGH+L NDL L + H + DT YK Q S
Sbjct: 293 -GEKFEVVQKEVADML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQK-YKPFKSQVKSG 349
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
+ SL++LA++ L ++QQ+ H S +DA+AAM L +L
Sbjct: 350 RPSLKLLAERILGIQVQQAE--HCSIQDAQAAMRLYIL 385
>UNIPROTKB|H0YMM4 [details] [associations]
symbol:ISG20 "Interferon-stimulated gene 20 kDa protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
HGNC:HGNC:6130 ChiTaRS:ISG20 EMBL:AC104259 Ensembl:ENST00000559876
Bgee:H0YMM4 Uniprot:H0YMM4
Length = 155
Score = 179 (68.1 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 52/152 (34%), Positives = 75/152 (49%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
E++A+DCEM E L R +LV++ G VL DK ++P I DY TR SG+T + +
Sbjct: 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTS 330
G T +L +L+ D+ I + D + + + S
Sbjct: 66 GATPFA------VARL---------EALKEDMSGYTI-YDTSTDRLLWREAKLDHCRRVS 109
Query: 331 LRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
LRVL+++ L + IQ S GH S EDARA MEL
Sbjct: 110 LRVLSERLLHKSIQNSLLGHSSVEDARATMEL 141
>UNIPROTKB|F1NQP7 [details] [associations]
symbol:Gga.48606 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:QKEVAEM EMBL:AADN02026478
IPI:IPI00594596 Ensembl:ENSGALT00000005016 Uniprot:F1NQP7
Length = 414
Score = 189 (71.6 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 56/159 (35%), Positives = 85/159 (53%)
Query: 215 LALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
+A+DCEM E + RV++V++ G+ + DK VKP+ + DY T SGI E L
Sbjct: 241 VAMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYDKYVKPTEEVTDYRTAVSGIRPEHLK- 299
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYK--HPQGGSH 327
K +Q+E ++ ILVGH+L NDL L + H + DT YK + +
Sbjct: 300 TGEDFKTVQKEVADIL-NGRILVGHALHNDLKVLFLDHPKKKIRDTQK-YKPFRQRVKNA 357
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLK 366
+ SL++L + L ++Q S H S +DA+AAM L L+
Sbjct: 358 RPSLKLLCDRLLDVQVQTSE--HCSIQDAQAAMRLYTLE 394
>UNIPROTKB|H9KZR7 [details] [associations]
symbol:H9KZR7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AADN02075373
Ensembl:ENSGALT00000017760 OMA:PTESDIW Uniprot:H9KZR7
Length = 379
Score = 189 (71.6 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 56/159 (35%), Positives = 85/159 (53%)
Query: 215 LALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
+A+DCEM E + RV++V++ G+ + DK VKP+ + DY T SGI E L
Sbjct: 206 VAMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYDKYVKPTEEVTDYRTAVSGIRPEHLK- 264
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYK--HPQGGSH 327
K +Q+E ++ ILVGH+L NDL L + H + DT YK + +
Sbjct: 265 TGEDFKTVQKEVADIL-NGRILVGHALHNDLKVLFLDHPKKKIRDTQK-YKPFRQRVKNA 322
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLK 366
+ SL++L + L ++Q S H S +DA+AAM L L+
Sbjct: 323 RPSLKLLCDRLLDVQVQTSE--HCSIQDAQAAMRLYTLE 359
Score = 40 (19.1 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 134 KLKRKRNAVDSMTKSTQPSQKENCSTVSENS 164
K+K K+ A D +K +++N + E S
Sbjct: 98 KVKSKKAATDKNSKPKHTEKRKNGNIEKEKS 128
>RGD|1306220 [details] [associations]
symbol:Rexo4 "REX4, RNA exonuclease 4 homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
RGD:1306220 GO:GO:0005730 GO:GO:0003676 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 KO:K01175 CTD:57109
HOGENOM:HOG000231626 HOVERGEN:HBG000999 OrthoDB:EOG4VX263
EMBL:BC161820 IPI:IPI00563200 RefSeq:NP_001029056.1
UniGene:Rn.116879 Ensembl:ENSRNOT00000042289 GeneID:311826
KEGG:rno:311826 UCSC:RGD:1306220 NextBio:664229
Genevestigator:B1WBN4 Uniprot:B1WBN4
Length = 409
Score = 185 (70.2 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 58/158 (36%), Positives = 87/158 (55%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
LALDCEM +G E RV++V+ G+ + DK VKP+ + DY T SGI E L
Sbjct: 231 LALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQ 290
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYKHPQG--GSH 327
+ +++E ++ K ILVGH+L NDL L + H + DT +K + S
Sbjct: 291 -GEEFEVVKKEVAAML-KGRILVGHALRNDLKVLFLEHPKKKIRDTQK-FKPFRSLVKSA 347
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
+ SL+ L++K L +QQ+ H S +DA+AAM L ++
Sbjct: 348 RPSLKQLSEKILGLRVQQAE--HCSVQDAQAAMRLYIM 383
>MGI|MGI:2684957 [details] [associations]
symbol:Rexo4 "REX4, RNA exonuclease 4 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 MGI:MGI:2684957
GO:GO:0005730 GO:GO:0003676 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 KO:K01175 CTD:57109
HOGENOM:HOG000231626 HOVERGEN:HBG000999 EMBL:AK079733 EMBL:AK138894
EMBL:BC060147 IPI:IPI00407108 RefSeq:NP_997117.2 UniGene:Mm.291874
ProteinModelPortal:Q6PAQ4 SMR:Q6PAQ4 PhosphoSite:Q6PAQ4
PaxDb:Q6PAQ4 PRIDE:Q6PAQ4 DNASU:227656 Ensembl:ENSMUST00000114020
GeneID:227656 KEGG:mmu:227656 UCSC:uc008iwn.1 InParanoid:Q6PAQ4
OMA:EWESIAR ChiTaRS:REXO4 NextBio:378724 Bgee:Q6PAQ4
CleanEx:MM_REXO4 Genevestigator:Q6PAQ4
GermOnline:ENSMUSG00000052406 Uniprot:Q6PAQ4
Length = 432
Score = 185 (70.2 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 57/157 (36%), Positives = 86/157 (54%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
LALDCEM +G E RV++V+ G+ + DK VKP+ + DY T SGI E L
Sbjct: 254 LALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQ 313
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYK-HPQGGSHK 328
+ +++E +++ K ILVGH+L NDL L + H + DT + S +
Sbjct: 314 -GEEFEVVKKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGR 371
Query: 329 TSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
SL+ L++K L +QQ+ H S +DA+AAM L ++
Sbjct: 372 PSLKRLSEKILGIRVQQAE--HCSIQDAQAAMRLYVM 406
>MGI|MGI:1928895 [details] [associations]
symbol:Isg20 "interferon-stimulated protein" species:10090
"Mus musculus" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISO] [GO:0008859 "exoribonuclease II activity"
evidence=IEA] [GO:0009615 "response to virus" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
MGI:MGI:1928895 GO:GO:0046872 GO:GO:0016605 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0006401 eggNOG:COG0847
HOGENOM:HOG000182422 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 GO:GO:0006364 GO:GO:0000175
GO:GO:0000738 GO:GO:0008310 GO:GO:0008859 CTD:3669 KO:K12579
OrthoDB:EOG4M91SN EMBL:AF217484 EMBL:AK008139 EMBL:AK008171
EMBL:AK008353 EMBL:BC022751 IPI:IPI00123340 IPI:IPI00467269
RefSeq:NP_001106999.1 RefSeq:NP_065608.2 UniGene:Mm.322843
ProteinModelPortal:Q9JL16 SMR:Q9JL16 STRING:Q9JL16
PhosphoSite:Q9JL16 PaxDb:Q9JL16 PRIDE:Q9JL16
Ensembl:ENSMUST00000038142 Ensembl:ENSMUST00000118867
Ensembl:ENSMUST00000120331 Ensembl:ENSMUST00000121645 GeneID:57444
KEGG:mmu:57444 UCSC:uc009hxt.1 InParanoid:Q9JL16 OMA:LNFILIQ
NextBio:313851 Bgee:Q9JL16 CleanEx:MM_ISG20 Genevestigator:Q9JL16
GermOnline:ENSMUSG00000039236 Uniprot:Q9JL16
Length = 300
Score = 173 (66.0 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 49/140 (35%), Positives = 79/140 (56%)
Query: 213 EILALDCEMCYTN-EGLE-LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
E++A+DCEM + + L R ++V+I G VL DK ++P I DY T+ SG+T + +
Sbjct: 6 EVVAMDCEMVGLGPQRVSGLARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQHMV 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTAV--LYKHPQGGS 326
T + + E L+L+ K ++VGH L++D ALK +S + DT+ L H
Sbjct: 66 RATP-FGEARLEILQLL-KGKLVVGHDLKHDFNALKEDMSKYTIYDTSTDRLLWHEAKLQ 123
Query: 327 H--KTSLRVLAKKFLSREIQ 344
+ + SLR+L K+ L + IQ
Sbjct: 124 YYSRVSLRLLCKRLLHKNIQ 143
>DICTYBASE|DDB_G0281327 [details] [associations]
symbol:rexo4 "RNA exonuclease 4" species:44689
"Dictyostelium discoideum" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] InterPro:IPR012337
dictyBase:DDB_G0281327 Pfam:PF00929 GO:GO:0005634
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0004518 RefSeq:XP_640882.1 ProteinModelPortal:Q54U94
STRING:Q54U94 EnsemblProtists:DDB0305008 GeneID:8622938
KEGG:ddi:DDB_G0281327 OMA:NDIPESQ Uniprot:Q54U94
Length = 298
Score = 169 (64.5 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 43/134 (32%), Positives = 79/134 (58%)
Query: 213 EILALDCEMCYT--NEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
+ ++DC++ N+G L +V + + GQ++ +K+VKP + IVD+ T+++G+T + +
Sbjct: 124 KFFSIDCKIIEIEGNKGT-LGKVCIANQNGQIIYEKIVKPMDKIVDFRTKFTGLTRDKVQ 182
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG--LVIDTAVLYK--HPQGGS 326
T +Q+E K++ + ILVGH L +DL LK++H L+ D K +P S
Sbjct: 183 REGTDFLQVQKEVEKIL-RHKILVGHDLVHDLKNLKLAHKKKLLRDATQFTKFFNPDTNS 241
Query: 327 HKTSLRVLAKKFLS 340
+ SL+ +AK+ L+
Sbjct: 242 -EDSLKSIAKRELN 254
>UNIPROTKB|E2R7T9 [details] [associations]
symbol:REXO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:QKEVAEM EMBL:AAEX03006772
Ensembl:ENSCAFT00000035775 Uniprot:E2R7T9
Length = 447
Score = 173 (66.0 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 53/147 (36%), Positives = 80/147 (54%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
LA+DCEM +G E RV++V+ G+ + DK VKP+ + DY T SGI E L
Sbjct: 246 LAMDCEMVGAGPKGEESVAARVSIVNQYGKCVYDKYVKPTQPVTDYRTAVSGIRPENLKQ 305
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYK--HPQGGSH 327
+ +Q+E ++ K ILVGH+L NDL L + H + DT YK Q S
Sbjct: 306 -GEKFEVVQKEVADML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQK-YKPFKSQVKSG 362
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTE 354
+ SL++LA++ L ++QQ+ D+ +
Sbjct: 363 RPSLKLLAERILGIQVQQAEHCSDNIQ 389
>ZFIN|ZDB-GENE-030131-3113 [details] [associations]
symbol:pan2 "PAN2 poly(A) specific ribonuclease
subunit homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR017986 InterPro:IPR001394
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50235 SMART:SM00479 Pfam:PF00929
ZFIN:ZDB-GENE-030131-3113 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 GO:GO:0006511
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004221 EMBL:BX927210
GeneTree:ENSGT00390000013978 IPI:IPI00899532
Ensembl:ENSDART00000111836 ArrayExpress:E7FG33 Bgee:E7FG33
Uniprot:E7FG33
Length = 1215
Score = 162 (62.1 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 60/174 (34%), Positives = 89/174 (51%)
Query: 228 LELTRVTLVDIKGQ----VLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS--LKDIQE 281
+ + R+T V +GQ +D + +VDY T+YSGI L +S L ++
Sbjct: 1016 MSVARITCVRGQGQNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKS 1075
Query: 282 EFLKLVYK-ETIL--VGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAK 336
+LKL + +T + VGH L+ D ++ L + VIDT L+ P+ SLR LA
Sbjct: 1076 TYLKLRFLIDTGVRFVGHGLQKDFRVINLMVPKDQVIDTVYLFHMPR--KRMISLRFLAW 1133
Query: 337 KFLSREIQQSGFGHDSTEDARAAMEL--ALLKI-RNVMRT---KLLKVLFEYGK 384
FL IQ G HDS EDAR A++L L++ N + K+LK L+E G+
Sbjct: 1134 YFLDLNIQ--GETHDSIEDARTALQLYRKYLELSHNGGQEEFRKVLKALYEKGR 1185
>DICTYBASE|DDB_G0269694 [details] [associations]
symbol:pan2 "polyA specific ribonuclease subunit"
species:44689 "Dictyostelium discoideum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0031251 "PAN complex" evidence=ISS] [GO:0006397
"mRNA processing" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=ISS] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=ISS] InterPro:IPR017986 InterPro:IPR001394
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50235 SMART:SM00479 dictyBase:DDB_G0269694 Pfam:PF00929
EMBL:AAFI02000005 GenomeReviews:CM000150_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0003676 GO:GO:0006511
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004221
GO:GO:0006301 GO:GO:0004535 KO:K12571 GO:GO:0031251 OMA:SKFGIED
RefSeq:XP_646196.2 ProteinModelPortal:Q55DD5
EnsemblProtists:DDB0237517 GeneID:8617149 KEGG:ddi:DDB_G0269694
InParanoid:Q55DD5 Uniprot:Q55DD5
Length = 1536
Score = 149 (57.5 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 50/166 (30%), Positives = 83/166 (50%)
Query: 230 LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV--TTSLKDIQEEFLKLV 287
L RV+++ G+ D ++ + DY TR+SGI L T ++ ++ +LKL
Sbjct: 1303 LARVSIIRENGEAFFDDYIQSIEPVTDYLTRFSGINPGDLDPKLSTKNVITLKSCYLKLR 1362
Query: 288 Y---KETILVGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSRE 342
Y + VGH L+ D ++ + + +IDT L++ K SLR LA L +
Sbjct: 1363 YLVDQGVKFVGHGLKKDFRIINIYVPPNQIIDTVELFQLKN--QRKLSLRFLAYILLKID 1420
Query: 343 IQQSGFGHDSTEDARAAMEL--ALLK-IRNVMRTKLLKVLFEYGKT 385
IQ H S EDA+ AM+L A L+ +RN + L +++ G++
Sbjct: 1421 IQSET--HCSVEDAKTAMDLYKAYLQLVRNKEFDETLNKIYQIGRS 1464
Score = 63 (27.2 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 160 VSENSSSAELLKDIPFPITYYTLT-EKQLEDNNYCYNQPGFLSTVPAPFGSSPYE--ILA 216
V NSS+ + +IP P T+T E L++N P ++ PA + P E ++A
Sbjct: 1215 VVSNSSTDTTITNIPIPPHISTITKEVYLQNNMVTCKTP--INFTPATANTIPKENDLVA 1272
Query: 217 LDCEMCYTNEGLELTRVT 234
+D E + + G E T V+
Sbjct: 1273 IDTE--FVSIGPEETEVS 1288
>UNIPROTKB|H3BLY5 [details] [associations]
symbol:ISG20 "Interferon-stimulated gene 20 kDa protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR012337 Pfam:PF00929 GO:GO:0003676
InterPro:IPR013520 SUPFAM:SSF53098 HGNC:HGNC:6130 ChiTaRS:ISG20
EMBL:AC104259 ProteinModelPortal:H3BLY5 SMR:H3BLY5
Ensembl:ENST00000379224 Bgee:H3BLY5 Uniprot:H3BLY5
Length = 87
Score = 131 (51.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
E++A+DCEM E L R +LV++ G VL DK ++P I DY TR SG+T + +
Sbjct: 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 65
Query: 271 GVT 273
G T
Sbjct: 66 GAT 68
>UNIPROTKB|E1BML0 [details] [associations]
symbol:PAN2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004221 "ubiquitin thiolesterase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001394 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR015943 PROSITE:PS50235 SMART:SM00479
Pfam:PF00929 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 GO:GO:0006511 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0004221 KO:K12571 CTD:9924 OMA:TQLHQDM
GeneTree:ENSGT00390000013978 EMBL:DAAA02013529 IPI:IPI00924297
RefSeq:NP_001073078.2 UniGene:Bt.87426 Ensembl:ENSBTAT00000061314
GeneID:538820 KEGG:bta:538820 NextBio:20877604 ArrayExpress:E1BML0
Uniprot:E1BML0
Length = 1198
Score = 157 (60.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 55/160 (34%), Positives = 81/160 (50%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS--LKDIQEEFLKLVYKETI---L 293
+G +D + +VDY T+YSGI L +S L ++ +LKL + I
Sbjct: 1016 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1075
Query: 294 VGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHD 351
VGH L+ D ++ L + V+DT L+ P+ SLR LA FL +IQ G HD
Sbjct: 1076 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1131
Query: 352 STEDARAAMEL--ALLKI-RNVMRT----KLLKVLFEYGK 384
S EDAR A++L L++ +N K+LK L+E G+
Sbjct: 1132 SIEDARTALQLYRKYLELSKNGTEPESFHKVLKSLYEKGR 1171
>UNIPROTKB|F1PV84 [details] [associations]
symbol:PAN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR017986
InterPro:IPR001394 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR015943 PROSITE:PS50235 SMART:SM00479 Pfam:PF00929
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 GO:GO:0006511 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0004221 OMA:TQLHQDM GeneTree:ENSGT00390000013978
EMBL:AAEX03006926 Ensembl:ENSCAFT00000000197 Uniprot:F1PV84
Length = 1198
Score = 156 (60.0 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 55/160 (34%), Positives = 81/160 (50%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS--LKDIQEEFLKLVYKETI---L 293
+G +D + +VDY T+YSGI L +S L ++ +LKL + I
Sbjct: 1016 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1075
Query: 294 VGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHD 351
VGH L+ D ++ L + V+DT L+ P+ SLR LA FL +IQ G HD
Sbjct: 1076 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1131
Query: 352 STEDARAAMEL--ALLKI-RNVMRT----KLLKVLFEYGK 384
S EDAR A++L L++ +N K+LK L+E G+
Sbjct: 1132 SIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGR 1171
>MGI|MGI:1918984 [details] [associations]
symbol:Pan2 "PAN2 polyA specific ribonuclease subunit
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=ISO] [GO:0000291 "nuclear-transcribed
mRNA catabolic process, exonucleolytic" evidence=ISO] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004221 "ubiquitin
thiolesterase activity" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR017986
InterPro:IPR001394 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR015943 PROSITE:PS50235 SMART:SM00479 Pfam:PF00929
MGI:MGI:1918984 GO:GO:0005634 GO:GO:0000184 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0090305 GO:GO:0006511
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0000932
GO:GO:0004221 GO:GO:0004535 KO:K12571 CTD:9924 HOGENOM:HOG000230585
HOVERGEN:HBG089847 OrthoDB:EOG4HQDHH OMA:TQLHQDM MEROPS:C19.978
EMBL:AK129196 EMBL:AK047887 EMBL:AK089001 EMBL:AK157800
EMBL:BC075686 EMBL:BC079841 IPI:IPI00221595 IPI:IPI00830428
IPI:IPI00831588 IPI:IPI00831685 RefSeq:NP_001239255.1
RefSeq:NP_001239256.1 RefSeq:NP_598753.1 UniGene:Mm.244183
UniGene:Mm.489673 ProteinModelPortal:Q8BGF7 SMR:Q8BGF7
STRING:Q8BGF7 PhosphoSite:Q8BGF7 PaxDb:Q8BGF7 PRIDE:Q8BGF7
Ensembl:ENSMUST00000005825 GeneID:103135 KEGG:mmu:103135
UCSC:uc007hme.1 UCSC:uc007hmf.1 UCSC:uc007hmg.1
GeneTree:ENSGT00390000013978 InParanoid:Q8BGF7 ChiTaRS:PAN2
NextBio:355801 Bgee:Q8BGF7 Genevestigator:Q8BGF7 Uniprot:Q8BGF7
Length = 1200
Score = 156 (60.0 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 55/160 (34%), Positives = 81/160 (50%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS--LKDIQEEFLKLVYKETI---L 293
+G +D + +VDY T+YSGI L +S L ++ +LKL + I
Sbjct: 1019 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1078
Query: 294 VGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHD 351
VGH L+ D ++ L + V+DT L+ P+ SLR LA FL +IQ G HD
Sbjct: 1079 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1134
Query: 352 STEDARAAMEL--ALLKI-RNVMRT----KLLKVLFEYGK 384
S EDAR A++L L++ +N K+LK L+E G+
Sbjct: 1135 SIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGR 1174
>UNIPROTKB|F1SLY8 [details] [associations]
symbol:PAN2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004221 "ubiquitin thiolesterase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001394 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR015943 PROSITE:PS50235 SMART:SM00479
Pfam:PF00929 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 GO:GO:0006511 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0004221 OMA:TQLHQDM
GeneTree:ENSGT00390000013978 EMBL:CU498845
Ensembl:ENSSSCT00000000424 Uniprot:F1SLY8
Length = 1205
Score = 156 (60.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 55/160 (34%), Positives = 81/160 (50%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS--LKDIQEEFLKLVYKETI---L 293
+G +D + +VDY T+YSGI L +S L ++ +LKL + I
Sbjct: 1023 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1082
Query: 294 VGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHD 351
VGH L+ D ++ L + V+DT L+ P+ SLR LA FL +IQ G HD
Sbjct: 1083 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1138
Query: 352 STEDARAAMEL--ALLKI-RNVMRT----KLLKVLFEYGK 384
S EDAR A++L L++ +N K+LK L+E G+
Sbjct: 1139 SIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGR 1178
>RGD|1303301 [details] [associations]
symbol:Pan2 "PAN2 polyA specific ribonuclease subunit homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001394
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50235 SMART:SM00479 Pfam:PF00929 RGD:1303301
GO:GO:0005634 GO:GO:0005737 GO:GO:0000184 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0090305 GO:GO:0006511
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004221
GO:GO:0004535 KO:K12571 CTD:9924 HOGENOM:HOG000230585
HOVERGEN:HBG089847 GeneTree:ENSGT00390000013978 EMBL:AABR03055877
EMBL:BN000323 IPI:IPI00421767 RefSeq:NP_001008862.1 UniGene:Rn.9091
ProteinModelPortal:Q6IE70 STRING:Q6IE70 PhosphoSite:Q6IE70
PRIDE:Q6IE70 Ensembl:ENSRNOT00000050792 GeneID:408200
KEGG:rno:408200 UCSC:RGD:1303301 InParanoid:Q6IE70 NextBio:696390
ArrayExpress:Q6IE70 Genevestigator:Q6IE70 Uniprot:Q6IE70
Length = 1205
Score = 156 (60.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 55/160 (34%), Positives = 81/160 (50%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS--LKDIQEEFLKLVYKETI---L 293
+G +D + +VDY T+YSGI L +S L ++ +LKL + I
Sbjct: 1020 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1079
Query: 294 VGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHD 351
VGH L+ D ++ L + V+DT L+ P+ SLR LA FL +IQ G HD
Sbjct: 1080 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1135
Query: 352 STEDARAAMEL--ALLKI-RNVMRT----KLLKVLFEYGK 384
S EDAR A++L L++ +N K+LK L+E G+
Sbjct: 1136 SIEDARTALQLYRKYLELSKNGAEPESFHKVLKGLYEKGR 1175
>UNIPROTKB|Q6IE70 [details] [associations]
symbol:Pan2 "PAB-dependent poly(A)-specific ribonuclease
subunit 2" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR017986
InterPro:IPR001394 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR015943 PROSITE:PS50235 SMART:SM00479 Pfam:PF00929
RGD:1303301 GO:GO:0005634 GO:GO:0005737 GO:GO:0000184
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0090305
GO:GO:0006511 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0004221 GO:GO:0004535 KO:K12571 CTD:9924 HOGENOM:HOG000230585
HOVERGEN:HBG089847 GeneTree:ENSGT00390000013978 EMBL:AABR03055877
EMBL:BN000323 IPI:IPI00421767 RefSeq:NP_001008862.1 UniGene:Rn.9091
ProteinModelPortal:Q6IE70 STRING:Q6IE70 PhosphoSite:Q6IE70
PRIDE:Q6IE70 Ensembl:ENSRNOT00000050792 GeneID:408200
KEGG:rno:408200 UCSC:RGD:1303301 InParanoid:Q6IE70 NextBio:696390
ArrayExpress:Q6IE70 Genevestigator:Q6IE70 Uniprot:Q6IE70
Length = 1205
Score = 156 (60.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 55/160 (34%), Positives = 81/160 (50%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS--LKDIQEEFLKLVYKETI---L 293
+G +D + +VDY T+YSGI L +S L ++ +LKL + I
Sbjct: 1020 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1079
Query: 294 VGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHD 351
VGH L+ D ++ L + V+DT L+ P+ SLR LA FL +IQ G HD
Sbjct: 1080 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1135
Query: 352 STEDARAAMEL--ALLKI-RNVMRT----KLLKVLFEYGK 384
S EDAR A++L L++ +N K+LK L+E G+
Sbjct: 1136 SIEDARTALQLYRKYLELSKNGAEPESFHKVLKGLYEKGR 1175
>FB|FBgn0033352 [details] [associations]
symbol:CG8232 species:7227 "Drosophila melanogaster"
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0004221 "ubiquitin thiolesterase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IGI]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR017986
InterPro:IPR001394 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR015943 PROSITE:PS50235 SMART:SM00479 Pfam:PF00929
EMBL:AE013599 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676
GO:GO:0005622 GO:GO:0006511 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0004221 GO:GO:0004535 GO:GO:0000289 KO:K12571
OMA:TQLHQDM GeneTree:ENSGT00390000013978 EMBL:BT031142
RefSeq:NP_610427.2 UniGene:Dm.11534 SMR:A1Z7K9 IntAct:A1Z7K9
STRING:A1Z7K9 EnsemblMetazoa:FBtr0088654 GeneID:35893
KEGG:dme:Dmel_CG8232 UCSC:CG8232-RA FlyBase:FBgn0033352
InParanoid:A1Z7K9 KO:K01072 OrthoDB:EOG4HT771 ChiTaRS:CG8232
GenomeRNAi:35893 NextBio:795685 Uniprot:A1Z7K9
Length = 1241
Score = 155 (59.6 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 54/157 (34%), Positives = 75/157 (47%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV-----TTSLKDIQEEFLKLVYKETIL 293
+G +D + +VDY T++SGI L T+LK ++ LV I
Sbjct: 1081 EGVPFMDDYISTQEKVVDYLTQFSGIKPGDLDANFSKKRLTALKYSYQKLKYLVDVGVIF 1140
Query: 294 VGHSLENDLLALKI--SHGLVIDTAVLYKHPQGGSHK-TSLRVLAKKFLSREIQQSGFGH 350
VGH L+ND + I +IDT L+ P H+ SLR LA FL +IQ H
Sbjct: 1141 VGHGLKNDFRVINIYVPSEQIIDTVHLFHMPH---HRMVSLRFLAWHFLGTKIQSET--H 1195
Query: 351 DSTEDARAAMELA--LLKIRNVMR-TKLLKVLFEYGK 384
DS EDAR ++L LK++ + LK L+E GK
Sbjct: 1196 DSIEDARTTLQLYKHYLKLQEEKKFANALKNLYERGK 1232
>UNIPROTKB|Q5F450 [details] [associations]
symbol:PAN2 "PAB-dependent poly(A)-specific ribonuclease
subunit 2" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001394
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50235 SMART:SM00479 Pfam:PF00929 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0003676 GO:GO:0090305 GO:GO:0006511 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004221 GO:GO:0004535
KO:K12571 EMBL:AJ851450 IPI:IPI00579039 RefSeq:NP_001012972.1
UniGene:Gga.18769 ProteinModelPortal:Q5F450 STRING:Q5F450
GeneID:429172 KEGG:gga:429172 CTD:9924 HOGENOM:HOG000230585
HOVERGEN:HBG089847 InParanoid:Q5F450 OrthoDB:EOG4HQDHH
NextBio:20829982 Uniprot:Q5F450
Length = 1197
Score = 155 (59.6 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 54/160 (33%), Positives = 79/160 (49%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS--LKDIQEEFLKLVYKETI---L 293
+G +D + +VDY T+YSGI L +S L ++ +LKL + +
Sbjct: 1015 EGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVKF 1074
Query: 294 VGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHD 351
VGH L+ D ++ L + VIDT L+ P+ SLR LA FL +IQ G HD
Sbjct: 1075 VGHGLQKDFRVINLMVPKDQVIDTVYLFHIPR--KRMISLRFLAWYFLDLKIQ--GETHD 1130
Query: 352 STEDARAAMEL--ALLKIRNVMRT-----KLLKVLFEYGK 384
S EDAR A++L L++ K+LK L+E G+
Sbjct: 1131 SIEDARTALQLYRKYLELSQGGSEPDDFRKVLKALYEKGR 1170
Score = 44 (20.5 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 143 DSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNY 192
DS+ + ENCS + + + F ++Y EK ++D +
Sbjct: 650 DSVIGQLFSCEVENCSMCRCGKETVRVSSTLLFTLSYPESAEKPVKDYEF 699
>CGD|CAL0004517 [details] [associations]
symbol:orf19.4764 species:5476 "Candida albicans" [GO:0031251
"PAN complex" evidence=IEA] [GO:0031124 "mRNA 3'-end processing"
evidence=IEA] [GO:0006301 "postreplication repair" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001394 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR015943 PROSITE:PS50082
PROSITE:PS50235 PROSITE:PS50294 SMART:SM00479 CGD:CAL0004517
Pfam:PF00929 GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0006397 GO:GO:0003676 GO:GO:0090305
GO:GO:0006511 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AACQ01000001 EMBL:AACQ01000002 GO:GO:0004221 GO:GO:0004535
RefSeq:XP_723261.1 RefSeq:XP_723450.1 ProteinModelPortal:Q5APK0
STRING:Q5APK0 GeneID:3634773 GeneID:3635119 KEGG:cal:CaO19.12228
KEGG:cal:CaO19.4764 KO:K12571 Uniprot:Q5APK0
Length = 1190
Score = 150 (57.9 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 59/199 (29%), Positives = 96/199 (48%)
Query: 196 QPGFLSTVPAPFGS-SPYEI-LALD-CEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSN 252
QPG L + A F P E+ + D + + L L R++++ G +D + ++
Sbjct: 983 QPGSLVAIDAEFVMLKPEELEIHYDGYKKLIKPKQLSLARISVLRENGIPFIDDYIVHTS 1042
Query: 253 AIVDYNTRYSGITHEMLSGVTTSLKD----IQEEFLKL---VYKETILVGHSLENDL--L 303
I DY T +SGI L+ +T S ++ +Q + KL + I VGH L ND +
Sbjct: 1043 DIYDYLTNFSGIEPNDLN-LTLSNRENLVTLQTAYRKLWLLLNLGVIFVGHGLYNDFRTI 1101
Query: 304 ALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELA 363
L++ + DTAV+Y + + SL+ LA L ++Q SG HDS EDA A+ L
Sbjct: 1102 NLQVPERQIRDTAVIY-YKSDFKRQLSLKFLAYVMLKEKVQ-SG-NHDSIEDANTAL-LL 1157
Query: 364 LLKIRNVMRTKLLKVLFEY 382
K +N+ + + + Y
Sbjct: 1158 YKKYQNLYNKEDFESILNY 1176
>UNIPROTKB|H0YMJ6 [details] [associations]
symbol:AEN "Apoptosis-enhancing nuclease" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR012337 Pfam:PF00929 GO:GO:0005730
GO:GO:0003676 EMBL:AC013489 HGNC:HGNC:25722 InterPro:IPR013520
SUPFAM:SSF53098 Ensembl:ENST00000559528 Bgee:H0YMJ6 Uniprot:H0YMJ6
Length = 179
Score = 128 (50.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 204 PAP---FGSSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDY 257
PAP G P + +A+DCEM T G EL R ++V G VL DK ++P I DY
Sbjct: 97 PAPGKASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADY 156
Query: 258 NTRYSGITHE 267
TR+SGIT +
Sbjct: 157 RTRWSGITRQ 166
>UNIPROTKB|Q504Q3 [details] [associations]
symbol:PAN2 "PAB-dependent poly(A)-specific ribonuclease
subunit 2" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR017986
InterPro:IPR001394 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR015943 PROSITE:PS50235 SMART:SM00479 Pfam:PF00929
EMBL:AB107585 GO:GO:0005829 GO:GO:0005634 GO:GO:0000184
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0006511
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004221
GO:GO:0004535 GO:GO:0000289 CleanEx:HS_PAN2 KO:K12571 CTD:9924
HOGENOM:HOG000230585 HOVERGEN:HBG089847 OrthoDB:EOG4HQDHH
OMA:TQLHQDM EMBL:AB014610 EMBL:BC024043 EMBL:BC094885
IPI:IPI00328254 IPI:IPI00747362 IPI:IPI00796020
RefSeq:NP_001120932.1 RefSeq:NP_001159751.1 RefSeq:NP_055686.3
UniGene:Hs.273397 ProteinModelPortal:Q504Q3 SMR:Q504Q3
DIP:DIP-50708N IntAct:Q504Q3 STRING:Q504Q3 MEROPS:C19.978
PhosphoSite:Q504Q3 DMDM:296439280 PaxDb:Q504Q3 PRIDE:Q504Q3
Ensembl:ENST00000257931 Ensembl:ENST00000425394
Ensembl:ENST00000440411 Ensembl:ENST00000548043 GeneID:9924
KEGG:hsa:9924 UCSC:uc001skx.3 UCSC:uc001sky.3 UCSC:uc001skz.3
GeneCards:GC12M056710 HGNC:HGNC:20074 neXtProt:NX_Q504Q3
PharmGKB:PA162398664 InParanoid:Q504Q3 GenomeRNAi:9924
NextBio:37442 ArrayExpress:Q504Q3 Bgee:Q504Q3 Genevestigator:Q504Q3
Uniprot:Q504Q3
Length = 1202
Score = 156 (60.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 55/160 (34%), Positives = 81/160 (50%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS--LKDIQEEFLKLVYKETI---L 293
+G +D + +VDY T+YSGI L +S L ++ +LKL + I
Sbjct: 1020 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1079
Query: 294 VGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHD 351
VGH L+ D ++ L + V+DT L+ P+ SLR LA FL +IQ G HD
Sbjct: 1080 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1135
Query: 352 STEDARAAMEL--ALLKI-RNVMRT----KLLKVLFEYGK 384
S EDAR A++L L++ +N K+LK L+E G+
Sbjct: 1136 SIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGR 1175
Score = 41 (19.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 143 DSMTKSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCYNQ 196
DS+ + ENCS S + + F ++Y ++ NY + Q
Sbjct: 650 DSVIGQLFSCEMENCSLCRCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQ 703
>ASPGD|ASPL0000042184 [details] [associations]
symbol:pan2 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001394 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR015943 PROSITE:PS50082
PROSITE:PS50235 PROSITE:PS50294 SMART:SM00479 Pfam:PF00929
GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
EMBL:BN001307 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000032
GO:GO:0090305 GO:GO:0006511 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0004221 GO:GO:0004535 KO:K12571
HOGENOM:HOG000230585 RefSeq:XP_659669.1 ProteinModelPortal:Q5BBL5
STRING:Q5BBL5 EnsemblFungi:CADANIAT00008734 GeneID:2875370
KEGG:ani:AN2065.2 OMA:TQLHQDM OrthoDB:EOG44F9J8 Uniprot:Q5BBL5
Length = 1154
Score = 144 (55.7 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 44/135 (32%), Positives = 66/135 (48%)
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS-----LKDIQEEFLKLVYKETIL 293
+G +D + IVDY T+YSGI L T+ LK ++ L+ +
Sbjct: 915 EGVPFIDDYISVKEPIVDYVTQYSGIKPGDLDPRTSPHNIVPLKVAYKKLWLLLNLGCVF 974
Query: 294 VGHSLENDL--LALKISHGLVIDTAVLYKHPQGGSHKTSLRVLA----KKFLSREIQQSG 347
VGH L +D + +++ +DT L+ HP + + SLR LA K+++ E S
Sbjct: 975 VGHGLASDFRKVNIQVPKKQTVDTQYLFFHPSK-NRRLSLRYLAWAVFKEYIQEEPADSN 1033
Query: 348 FGHDSTEDARAAMEL 362
GHDS EDAR A+ L
Sbjct: 1034 QGHDSIEDARMALRL 1048
>WB|WBGene00017951 [details] [associations]
symbol:panl-2 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
SMART:SM00320 SMART:SM00479 Pfam:PF00929 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:FO080392
KO:K12571 GeneTree:ENSGT00390000013978 PIR:T16217
RefSeq:NP_498519.1 ProteinModelPortal:P53015 SMR:P53015
STRING:P53015 PaxDb:P53015 EnsemblMetazoa:F31E3.4 GeneID:175974
KEGG:cel:CELE_F31E3.4 UCSC:F31E3.4 CTD:175974 WormBase:F31E3.4
HOGENOM:HOG000020895 InParanoid:P53015 OMA:CITCELH NextBio:890566
Uniprot:P53015
Length = 1131
Score = 142 (55.0 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 46/141 (32%), Positives = 68/141 (48%)
Query: 232 RVTLVDIKGQ-VLLDKLVKPSN--AIVDYNTRYSGITHEMLSGVT-----TSLKDIQEEF 283
R + VD G+ ++ D VK ++ +VDY T++SGI L T T+ K +
Sbjct: 937 RASCVDSTGERIIFDDHVKLTDDVEVVDYLTKFSGIVKADLCPTTSEKYLTTHKRLLLRM 996
Query: 284 LKLVYKETILVGHSLENDLLALKI--SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSR 341
L+ + VGH+L ND L + + +IDT L + G SL+ L K+ L
Sbjct: 997 HVLIQRGVTFVGHALHNDFTVLNVHVAESQIIDTVTLMR--LGTQRMLSLQFLVKEILGE 1054
Query: 342 EIQQSGFGHDSTEDARAAMEL 362
IQ HDS DAR A++L
Sbjct: 1055 TIQMEA--HDSVVDARYALKL 1073
>TAIR|locus:2066406 [details] [associations]
symbol:AT2G48100 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=RCA]
InterPro:IPR006055 InterPro:IPR007087 InterPro:IPR012337
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00479 Pfam:PF00929 EMBL:CP002685 GO:GO:0008270
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:AC006072 EMBL:AF386965 EMBL:AY081469
IPI:IPI00546038 PIR:D84923 RefSeq:NP_001031560.1 RefSeq:NP_566124.1
RefSeq:NP_973715.1 UniGene:At.13478 ProteinModelPortal:Q9ZU79
SMR:Q9ZU79 EnsemblPlants:AT2G48100.1 EnsemblPlants:AT2G48100.2
EnsemblPlants:AT2G48100.3 GeneID:819422 KEGG:ath:AT2G48100
TAIR:At2g48100 InParanoid:Q9ZU79 OMA:MRLYKRM PhylomeDB:Q9ZU79
ProtClustDB:CLSN2917359 ArrayExpress:Q9ZU79 Genevestigator:Q9ZU79
Uniprot:Q9ZU79
Length = 344
Score = 126 (49.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 59/194 (30%), Positives = 84/194 (43%)
Query: 188 EDNNYCYNQPGF---LSTVPAPFGS---SPYEILALDCEMCYTN-EGL--ELTRVTLVDI 238
E N C+ P ST P S S + +ALDCEM +G + V LVD
Sbjct: 100 EHKNKCHLSPPRPLGTSTQRNPSSSLAGSRLKAMALDCEMVGGGADGTIDQCASVCLVDD 159
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYK-------ET 291
V+ V+P + DY +G+T E L L+ ++E +
Sbjct: 160 DENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD-GMPLEHVRERVFSFLCGGQNDGAGRL 218
Query: 292 ILVGHSLENDLLALKI---SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF 348
+LVGH L +D+ LK+ SH L+ DTA + SL+ L K +L +IQ G
Sbjct: 219 LLVGHDLRHDMSCLKLEYPSH-LLRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQ-CG- 275
Query: 349 GHDSTEDARAAMEL 362
H+ ED +AM L
Sbjct: 276 KHEVYEDCVSAMRL 289
>TAIR|locus:2086839 [details] [associations]
symbol:AT3G27970 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR006055 InterPro:IPR007087 InterPro:IPR012337
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00479 Pfam:PF00929 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:BT033110
EMBL:AB493636 IPI:IPI00533339 RefSeq:NP_189436.2 UniGene:At.50233
ProteinModelPortal:B3LFC1 SMR:B3LFC1 PaxDb:B3LFC1 PRIDE:B3LFC1
EnsemblPlants:AT3G27970.1 GeneID:822421 KEGG:ath:AT3G27970
TAIR:At3g27970 HOGENOM:HOG000237419 OMA:LPKVECA PhylomeDB:B3LFC1
ProtClustDB:CLSN2687545 Genevestigator:B3LFC1 Uniprot:B3LFC1
Length = 357
Score = 126 (49.4 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 55/172 (31%), Positives = 81/172 (47%)
Query: 210 SPYEILALDCEMCYT-NEG-LEL-TRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITH 266
SP ++AL C+M ++G L+L RV + D V+ VKPS A+ Y +GI
Sbjct: 132 SP-RVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRP 190
Query: 267 EMLSGVTTSLKDIQ---EEFL---KLVYK-------ETILVGHSLENDL--LALKISHGL 311
E L LK +Q +EFL + ++K ILVGH L++DL L L+ +
Sbjct: 191 ENLRDAMP-LKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSM 249
Query: 312 VIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFG-HDSTEDARAAMEL 362
+ DTA + SL+ L + +L ++ FG D ED A M L
Sbjct: 250 IRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVH---FGIQDPYEDCVATMRL 298
>SGD|S000003062 [details] [associations]
symbol:PAN2 "Essential subunit of the Pan2p-Pan3p
poly(A)-ribonuclease complex" species:4932 "Saccharomyces
cerevisiae" [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA;IMP;IPI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006301 "postreplication repair"
evidence=IGI;IPI] [GO:0006397 "mRNA processing"
evidence=IEA;IMP;IPI] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004221
"ubiquitin thiolesterase activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031124 "mRNA 3'-end processing"
evidence=IMP;IPI] [GO:0031251 "PAN complex" evidence=IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] InterPro:IPR017986
InterPro:IPR001394 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR015943 PROSITE:PS50082 PROSITE:PS50235 PROSITE:PS50294
SMART:SM00479 SGD:S000003062 Pfam:PF00929 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 EMBL:BK006941 GO:GO:0003676
GO:GO:0090305 GO:GO:0006511 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0004221 GO:GO:0006301 GO:GO:0004535
GO:GO:0031124 KO:K12571 HOGENOM:HOG000230585 OrthoDB:EOG44F9J8
GeneTree:ENSGT00390000013978 GO:GO:0031251 EMBL:U39204 EMBL:Z72616
PIR:S64101 RefSeq:NP_011421.1 ProteinModelPortal:P53010 SMR:P53010
DIP:DIP-2466N IntAct:P53010 MINT:MINT-637100 STRING:P53010
PaxDb:P53010 EnsemblFungi:YGL094C GeneID:852786 KEGG:sce:YGL094C
CYGD:YGL094c OMA:SKFGIED NextBio:972276 Genevestigator:P53010
GermOnline:YGL094C Uniprot:P53010
Length = 1115
Score = 134 (52.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 56/205 (27%), Positives = 92/205 (44%)
Query: 198 GFLSTVPAPFGSSPYEILALDCE---MCYTNEGLELTRVTLV-----DIKGQVLLDKLVK 249
G L + A F S E+ +D + + L R++++ ++ G +D V
Sbjct: 904 GTLVAIDAEFVSLQSELCEIDHQGIRSIIRPKRTALARISIIRGEEGELYGVPFVDDYVV 963
Query: 250 PSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEE--FLK---LVYKETILVGHSLENDL-- 302
+N I DY TRYSGI L ++ + ++ + K L+ + VGH L ND
Sbjct: 964 NTNHIEDYLTRYSGILPGDLDPEKSTKRLVRRNVVYRKVWLLMQLGCVFVGHGLNNDFKH 1023
Query: 303 LALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ + + + DTA+ + G SLR LA L IQ+ HDS EDA A+ L
Sbjct: 1024 ININVPRNQIRDTAIYFLQ---GKRYLSLRYLAYVLLGMNIQEGN--HDSIEDAHTALIL 1078
Query: 363 --ALLKIRN-VMRTKLLKVLFEYGK 384
L ++ + K+L ++E G+
Sbjct: 1079 YKKYLHLKEKAIFEKVLNSVYEEGR 1103
Score = 43 (20.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 137 RKRNAVDSMT-KSTQPSQKENCSTVSENSSSAELLKDIPFPITYYTLTE 184
+ + +T KS PS + S ++ SS E L FP+ Y T+
Sbjct: 387 KSEGTIPQLTGKSPLPSSGKLKSNLAVISSQNEKLSTQEFPLLRYDRTK 435
>TAIR|locus:2170533 [details] [associations]
symbol:AT5G40310 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00096 InterPro:IPR006055 InterPro:IPR007087
InterPro:IPR012337 InterPro:IPR015880 PROSITE:PS00028
PROSITE:PS50157 SMART:SM00355 SMART:SM00479 Pfam:PF00929
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:AB006702 HOGENOM:HOG000237419
ProtClustDB:CLSN2687545 IPI:IPI00536517 RefSeq:NP_198847.1
UniGene:At.55275 ProteinModelPortal:Q9FNE7 SMR:Q9FNE7
EnsemblPlants:AT5G40310.1 GeneID:834029 KEGG:ath:AT5G40310
TAIR:At5g40310 InParanoid:Q9FNE7 OMA:ITDESEN PhylomeDB:Q9FNE7
Genevestigator:Q9FNE7 Uniprot:Q9FNE7
Length = 348
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 56/180 (31%), Positives = 82/180 (45%)
Query: 201 STVPAPFGSSPYEILALDCEMCYT-NEG-LEL-TRVTLVDIKGQVLLDKLVKPSNAIVDY 257
ST+ SP ++AL C+M ++G L+L RV + D V+ VKP+ + +Y
Sbjct: 114 STIDYTSSRSP-RVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNY 172
Query: 258 NTRYSGITHEMLSGVTTSLKDIQ---EEFL---KLVYK-------ETILVGHSLEN--DL 302
+GI E L LK Q +EFL + ++K ILVGH L+N D
Sbjct: 173 RYEMTGIRPENLRDAMR-LKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDS 231
Query: 303 LALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
L L+ S ++ DTA + SL+ L + +L +I G D ED A M L
Sbjct: 232 LQLEYSSSMIRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHV-GI-QDPYEDCVATMRL 289
>POMBASE|SPAC22G7.04 [details] [associations]
symbol:ubp13 "ubiquitin C-terminal hydrolase,
poly(A)-specific ribonuclease complex subunit Pan2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0004221 "ubiquitin
thiolesterase activity" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=ISO] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISM] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0031251 "PAN complex" evidence=ISO]
InterPro:IPR017986 InterPro:IPR001394 InterPro:IPR001680
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50082 PROSITE:PS50235 PROSITE:PS50294 SMART:SM00320
SMART:SM00479 PomBase:SPAC22G7.04 Pfam:PF00929 EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0006397 GO:GO:0003676 GO:GO:0006511
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004843
GO:GO:0004221 GO:GO:0006301 GO:GO:0004535 HOGENOM:HOG000230585
OrthoDB:EOG44F9J8 MEROPS:C19.978 PIR:T11614 RefSeq:NP_593053.2
STRING:Q09798 EnsemblFungi:SPAC22G7.04.1 GeneID:2541684
NextBio:20802777 GO:GO:0031251 Uniprot:Q09798
Length = 1088
Score = 122 (48.0 bits), Expect = 0.00091, P = 0.00091
Identities = 48/146 (32%), Positives = 67/146 (45%)
Query: 228 LELTRVTLV----DIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTS-----LKD 278
L L RV+++ KG +D V + + DY T YSGI L + LK
Sbjct: 890 LSLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVVPLKV 949
Query: 279 IQEEFLKLVYKETILVGHSLEND--LLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAK 336
++ LV I VGH L+ D ++ L + V+DT L+ K SL+ LA
Sbjct: 950 AYKKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDTVDLF-FLSSRQRKLSLKFLAW 1008
Query: 337 KFLSREIQQSGFGHDSTEDARAAMEL 362
L EIQ + HDS EDA A++L
Sbjct: 1009 YLLDEEIQLTE--HDSIEDALTALKL 1032
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 560 546 0.00096 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 117
No. of states in DFA: 613 (65 KB)
Total size of DFA: 283 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.87u 0.13s 50.00t Elapsed: 00:00:02
Total cpu time: 49.88u 0.13s 50.01t Elapsed: 00:00:02
Start: Fri May 10 05:07:17 2013 End: Fri May 10 05:07:19 2013
WARNINGS ISSUED: 1