Query 008596
Match_columns 560
No_of_seqs 279 out of 1286
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 100.0 1.9E-29 6.5E-34 241.1 12.7 155 212-368 5-167 (189)
2 2p1j_A POLIII, DNA polymerase 99.9 8.3E-25 2.8E-29 208.2 11.6 151 212-369 12-175 (186)
3 2gui_A DNA polymerase III epsi 99.9 1.4E-23 4.9E-28 200.0 12.4 153 212-369 9-184 (194)
4 1w0h_A 3'-5' exonuclease ERI1; 99.9 6.8E-23 2.3E-27 196.3 10.0 155 211-369 9-194 (204)
5 2igi_A Oligoribonuclease; RNAs 99.9 1E-21 3.5E-26 185.1 11.4 141 212-369 5-176 (180)
6 1y97_A Three prime repair exon 99.9 2.8E-22 9.5E-27 196.9 7.8 163 212-383 10-218 (238)
7 3mxm_B Three prime repair exon 99.9 2.8E-22 9.5E-27 199.4 6.2 165 211-384 11-224 (242)
8 1zbh_A 3'-5' exonuclease ERI1; 99.8 2.7E-21 9.4E-26 197.7 12.2 154 212-369 78-262 (299)
9 2f96_A Ribonuclease T; RNAse, 99.8 3.8E-21 1.3E-25 187.8 11.0 152 212-369 29-212 (224)
10 2xri_A ERI1 exoribonuclease 3; 99.8 3.5E-21 1.2E-25 188.6 8.1 153 212-369 31-213 (224)
11 1zbu_A ERI-1 homolog, 3'-5' ex 99.8 5E-21 1.7E-25 200.3 9.0 154 212-369 128-312 (349)
12 3u3y_B Three prime repair exon 99.8 3.9E-21 1.3E-25 198.4 7.6 165 211-384 11-224 (314)
13 2gbz_A Oligoribonuclease; ORN, 99.8 1.3E-20 4.4E-25 180.8 9.7 143 211-369 8-180 (194)
14 3v9w_A Ribonuclease T; DEDD nu 99.8 7E-20 2.4E-24 179.9 11.6 152 212-369 37-220 (235)
15 3cg7_A CRN-4, cell death-relat 99.8 1.1E-20 3.6E-25 194.5 5.7 153 212-369 19-208 (308)
16 2qxf_A Exodeoxyribonuclease I; 99.8 1.2E-18 4E-23 189.4 9.5 154 212-369 9-200 (482)
17 3tr8_A Oligoribonuclease; tran 99.7 1.2E-18 4.2E-23 167.4 5.7 144 211-369 8-180 (186)
18 2kfn_A Klenow fragment of DNA 98.5 1.2E-06 4.3E-11 97.4 14.8 141 213-369 27-192 (605)
19 4hec_A Putative uncharacterize 98.4 2.2E-06 7.7E-11 82.6 11.9 149 211-366 21-178 (190)
20 1x9m_A DNA polymerase; DNA plo 98.0 1.8E-06 6.3E-11 97.7 4.2 129 214-368 1-181 (698)
21 3saf_A Exosome component 10; e 97.7 0.0001 3.5E-09 79.1 10.6 124 213-365 130-272 (428)
22 4dfk_A DNA polymerase I, therm 97.7 3.3E-05 1.1E-09 85.1 5.8 116 213-369 11-127 (540)
23 1vk0_A Hypothetical protein; h 97.2 0.00049 1.7E-08 66.8 6.9 83 283-365 100-202 (206)
24 2e6m_A Werner syndrome ATP-dep 97.1 0.00029 9.8E-09 67.3 3.9 83 282-364 87-189 (208)
25 1yt3_A Ribonuclease D, RNAse D 97.0 0.0037 1.3E-07 65.3 11.6 87 282-369 65-169 (375)
26 2hbj_A Exosome complex exonucl 96.4 0.011 3.9E-07 62.7 10.4 85 283-369 151-253 (410)
27 3pv8_A DNA polymerase I; DNA p 96.3 0.0021 7.1E-08 71.6 3.7 128 214-369 31-180 (592)
28 1noy_A Protein (DNA polymerase 96.2 0.028 9.7E-07 59.0 11.9 130 211-342 105-298 (388)
29 3cym_A Uncharacterized protein 96.2 0.041 1.4E-06 58.9 13.2 86 281-369 85-186 (440)
30 1qht_A Protein (DNA polymerase 96.1 0.0077 2.6E-07 68.9 7.7 138 211-365 134-325 (775)
31 2i09_A Phosphopentomutase; str 96.1 0.022 7.5E-07 60.6 10.6 110 372-514 230-342 (403)
32 3ot9_A Phosphopentomutase; alk 96.0 0.022 7.5E-07 60.5 9.9 110 372-514 226-335 (399)
33 1s5j_A DNA polymerase I; repli 94.9 0.13 4.5E-06 59.4 12.2 147 211-363 189-386 (847)
34 3k59_A POL II, DNA polymerase 93.9 0.49 1.7E-05 54.3 13.7 137 209-365 150-348 (786)
35 3iay_A DNA polymerase delta ca 93.8 0.091 3.1E-06 61.3 7.6 145 210-366 247-465 (919)
36 3qex_A DNA polymerase, GP43; d 93.6 0.31 1E-05 56.8 11.4 154 212-365 108-337 (903)
37 4gmj_B CCR4-NOT transcription 92.3 1.4 4.9E-05 44.6 13.0 148 213-366 35-241 (285)
38 2a1r_A Poly(A)-specific ribonu 91.7 0.48 1.6E-05 50.6 9.0 98 267-368 262-395 (430)
39 3d45_A Poly(A)-specific ribonu 90.6 0.28 9.6E-06 53.5 6.0 92 274-369 263-391 (507)
40 2gv9_A DNA polymerase; polymer 88.2 3.8 0.00013 49.2 13.7 93 210-306 318-434 (1193)
41 1o98_A 2,3-bisphosphoglycerate 75.9 8.1 0.00028 42.2 9.2 74 409-515 374-448 (511)
42 3q3q_A Alkaline phosphatase; h 72.9 4.9 0.00017 44.4 6.6 74 411-515 267-349 (565)
43 2py5_A DNA polymerase; protein 72.4 6.1 0.00021 43.6 7.3 67 211-306 5-71 (575)
44 3igz_B Cofactor-independent ph 67.5 6.9 0.00024 43.2 6.2 78 407-517 394-472 (561)
45 3m7v_A Phosphopentomutase; str 65.7 5 0.00017 40.0 4.4 34 482-515 312-345 (413)
46 2gso_A Phosphodiesterase-nucle 64.6 10 0.00034 38.7 6.5 75 410-515 140-222 (393)
47 1ei6_A Phosphonoacetate hydrol 63.3 18 0.0006 37.2 8.2 70 410-515 175-244 (406)
48 3nkq_A Ectonucleotide pyrophos 62.7 18 0.00063 41.6 8.9 95 374-513 223-325 (831)
49 2zkt_A 2,3-bisphosphoglycerate 60.9 15 0.00052 38.7 7.2 72 409-515 278-350 (412)
50 3lxq_A Uncharacterized protein 53.5 59 0.002 33.7 10.3 34 481-514 270-308 (450)
51 2d5r_A CCR4-NOT transcription 44.5 70 0.0024 31.6 8.5 100 262-366 109-231 (252)
52 3szy_A Phosphonoacetate hydrol 44.4 44 0.0015 35.3 7.5 32 479-513 224-255 (427)
53 3kd8_A 2,3-bisphosphoglycerate 43.7 28 0.00095 36.8 5.8 71 410-516 276-346 (399)
54 4gtw_A Ectonucleotide pyrophos 40.3 2.3E+02 0.0078 32.3 13.1 35 480-514 287-326 (823)
55 2p51_A SPCC18.06C protein; DED 32.8 54 0.0018 33.9 5.7 98 262-364 130-250 (333)
56 1uoc_A POP2; hydrolase, DEDD n 28.3 45 0.0016 33.7 4.2 74 288-364 153-259 (289)
57 2l82_A Designed protein OR32; 26.4 1.5E+02 0.0053 26.0 6.6 81 406-511 6-86 (162)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.96 E-value=1.9e-29 Score=241.10 Aligned_cols=155 Identities=39% Similarity=0.583 Sum_probs=133.3
Q ss_pred CcEEEEEeccccCCCC--ceEEEEEEEEecCcEEEEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHHhhcC
Q 008596 212 YEILALDCEMCYTNEG--LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYK 289 (560)
Q Consensus 212 ~~~valDcEm~~t~~g--~eL~rVsvVd~~G~vvlD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~~i~~ 289 (560)
.++++|||||||+++. .+|++|++|+.+|+++|++||+|..+|++|.|++||||++||+++ +++++|+.+|.+++ +
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a-~~~~~v~~~~~~~l-~ 82 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGA-TPFAVARLEILQLL-K 82 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTC-EEHHHHHHHHHHHH-T
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCC-CCHHHHHHHHHHHH-C
Confidence 4699999999999865 589999999999999999999999999999999999999999998 79999999999999 7
Q ss_pred CCEEEEeCchhhHHHHccccCc--cccccccccccc--C--CCCCccHHHHHHHhcCcccccCCCCCChHHHHHHHHHHH
Q 008596 290 ETILVGHSLENDLLALKISHGL--VIDTAVLYKHPQ--G--GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELA 363 (560)
Q Consensus 290 ~~ILVGHsL~~DL~aLki~Hp~--viDT~~Ly~~~~--g--~~~k~sLk~La~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~ 363 (560)
+++|||||+.||+++|+..+|. ++||..++...+ + ...+++|+.||++|||++++.++.+|+|++||++|++|+
T Consensus 83 ~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~ 162 (189)
T 1wlj_A 83 GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELY 162 (189)
T ss_dssp TSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHH
T ss_pred CCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHH
Confidence 8999999999999999988874 899998854211 1 225678999999878999885323899999999999999
Q ss_pred HHHHH
Q 008596 364 LLKIR 368 (560)
Q Consensus 364 ~~kl~ 368 (560)
+..++
T Consensus 163 ~~l~~ 167 (189)
T 1wlj_A 163 QISQR 167 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 2
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.91 E-value=8.3e-25 Score=208.24 Aligned_cols=151 Identities=28% Similarity=0.355 Sum_probs=130.6
Q ss_pred CcEEEEEeccccCCCC-ceEEEEEEEEe-cCcEE--EEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHHhh
Q 008596 212 YEILALDCEMCYTNEG-LELTRVTLVDI-KGQVL--LDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLV 287 (560)
Q Consensus 212 ~~~valDcEm~~t~~g-~eL~rVsvVd~-~G~vv--lD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~~i 287 (560)
.++++|||||+|+++. ++|++|++|.. +|+++ |+.||+|..+|+++.+++||||+++|+++ +++.+|+.+|.+++
T Consensus 12 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~-~~~~~v~~~~~~~l 90 (186)
T 2p1j_A 12 ATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENK-RSIEEVLPEFLGFL 90 (186)
T ss_dssp -CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTC-CBHHHHHHHHHHHS
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcC-CCHHHHHHHHHHHH
Confidence 4699999999999864 79999999986 67777 89999999999999999999999999998 79999999999999
Q ss_pred cCCCEEEEeCchhhHHHHcc---------ccCcccccccccccccCCCCCccHHHHHHHhcCcccccCCCCCChHHHHHH
Q 008596 288 YKETILVGHSLENDLLALKI---------SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARA 358 (560)
Q Consensus 288 ~~~~ILVGHsL~~DL~aLki---------~Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~~HdSlEDA~A 358 (560)
++.+|||||+.||+.+|+. .+..++||..+++... ...+++|+.|+++ ||++.. +.|+|++||++
T Consensus 91 -~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~~~~L~~l~~~-~gi~~~---~~H~Al~Da~~ 164 (186)
T 2p1j_A 91 -EDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLRSYSLDSVVEK-LGLGPF---RHHRALDDARV 164 (186)
T ss_dssp -SSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCSCCSHHHHHHH-TTCCST---TCCHHHHHHHH
T ss_pred -CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcCCCCHHHHHHH-cCCCCC---CCcCHHHHHHH
Confidence 7899999999999999973 2457899998876654 3456789999985 688865 37999999999
Q ss_pred HHHHHHHHHHh
Q 008596 359 AMELALLKIRN 369 (560)
Q Consensus 359 tl~L~~~kl~~ 369 (560)
|++|++..+++
T Consensus 165 t~~l~~~l~~~ 175 (186)
T 2p1j_A 165 TAQVFLRFVEM 175 (186)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHH
Confidence 99998755544
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.90 E-value=1.4e-23 Score=200.04 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=127.9
Q ss_pred CcEEEEEeccccCCC------CceEEEEEEEEec-CcEE---EEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHH
Q 008596 212 YEILALDCEMCYTNE------GLELTRVTLVDIK-GQVL---LDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQE 281 (560)
Q Consensus 212 ~~~valDcEm~~t~~------g~eL~rVsvVd~~-G~vv---lD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~ 281 (560)
.++++|||||+|.+. +++|++|++|..+ |.++ |+.||+|..+|+++.+++||||+++|+++ +++++|+.
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~-~~~~~v~~ 87 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDK-PTFAEVAD 87 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTS-CCHHHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCC-CCHHHHHH
Confidence 469999999999987 3799999999974 5553 89999999999999999999999999998 79999999
Q ss_pred HHHHhhcCCCEEEEeCchhhHHHHcc-------cc------CcccccccccccccCCCCCccHHHHHHHhcCcccccCCC
Q 008596 282 EFLKLVYKETILVGHSLENDLLALKI-------SH------GLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF 348 (560)
Q Consensus 282 ~L~~~i~~~~ILVGHsL~~DL~aLki-------~H------p~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~ 348 (560)
+|.+++ ++.+|||||+.||+.+|+. .. ..++||..+++...+ ..+++|..|+++ ||++... ..
T Consensus 88 ~~~~~l-~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p-~~~~~L~~l~~~-~gi~~~~-~~ 163 (194)
T 2gui_A 88 EFMDYI-RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFP-GKRNSLDALCAR-YEIDNSK-RT 163 (194)
T ss_dssp HHHHHH-TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHST-TSCCSHHHHHHH-TTCCCTT-CS
T ss_pred HHHHHH-CCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcC-CCCCCHHHHHHH-cCcCCCC-CC
Confidence 999999 7899999999999999983 11 257999887765432 235689999986 6887642 13
Q ss_pred CCChHHHHHHHHHHHHHHHHh
Q 008596 349 GHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 349 ~HdSlEDA~Atl~L~~~kl~~ 369 (560)
.|+|++||++|++|++..+++
T Consensus 164 ~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 164 LHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp SCCHHHHHHHHHHHHHHHTC-
T ss_pred CCChHHHHHHHHHHHHHHHhc
Confidence 799999999999998655443
No 4
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.88 E-value=6.8e-23 Score=196.31 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=128.7
Q ss_pred CCcEEEEEeccccCCC-----CceEEEEEEEEe---cCcEE--EEEEEeCCC--CCCCCcEEecCCChhhhcCCCCCHHH
Q 008596 211 PYEILALDCEMCYTNE-----GLELTRVTLVDI---KGQVL--LDKLVKPSN--AIVDYNTRYSGITHEMLSGVTTSLKD 278 (560)
Q Consensus 211 ~~~~valDcEm~~t~~-----g~eL~rVsvVd~---~G~vv--lD~LVkP~~--~I~dy~T~~SGIT~e~L~~~~~tl~d 278 (560)
...+++|||||+|.+. .++|++|++|.. +|+++ |+.||+|.. +|+++.+++||||+++|+++ +++.+
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~-~~~~~ 87 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRA-DTFPQ 87 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTS-BCHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCC-CCHHH
Confidence 3579999999999985 369999998876 68887 999999998 99999999999999999998 79999
Q ss_pred HHHHHHHhhcCCC------EEEEeCchhhHH-HHcc-------ccC----cccccccccccccCC-CCCccHHHHHHHhc
Q 008596 279 IQEEFLKLVYKET------ILVGHSLENDLL-ALKI-------SHG----LVIDTAVLYKHPQGG-SHKTSLRVLAKKFL 339 (560)
Q Consensus 279 Vq~~L~~~i~~~~------ILVGHsL~~DL~-aLki-------~Hp----~viDT~~Ly~~~~g~-~~k~sLk~La~~~L 339 (560)
|+.+|.+++.... +|||||..||++ +|+. ..| .++||..+|+...+. ...++|..|+++ |
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~ 166 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-L 166 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-T
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHH-c
Confidence 9999999995433 599999999997 9972 233 579999888765332 224689999986 6
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 340 SREIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 340 g~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
|++.+. ..|+|++||++|++|+...+++
T Consensus 167 gi~~~~--~~H~Al~Da~~ta~l~~~l~~~ 194 (204)
T 1w0h_A 167 GMDYDG--RPHCGLDDSKNIARIAVRMLQD 194 (204)
T ss_dssp TCCCCS--CTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC--CccCcHHHHHHHHHHHHHHHHC
Confidence 888752 3799999999999999766654
No 5
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.86 E-value=1e-21 Score=185.09 Aligned_cols=141 Identities=15% Similarity=0.164 Sum_probs=109.8
Q ss_pred CcEEEEEeccccCCCC-ceEEEEEEEEec--CcEE---EEEEEeCCCCCCCCc-------EEecCCChhhhcCCCCCHHH
Q 008596 212 YEILALDCEMCYTNEG-LELTRVTLVDIK--GQVL---LDKLVKPSNAIVDYN-------TRYSGITHEMLSGVTTSLKD 278 (560)
Q Consensus 212 ~~~valDcEm~~t~~g-~eL~rVsvVd~~--G~vv---lD~LVkP~~~I~dy~-------T~~SGIT~e~L~~~~~tl~d 278 (560)
.++++|||||+|++.. ++|++|++|..+ |+++ |+.||+|..+|+++. +++||||++||+++ +++++
T Consensus 5 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~-~~~~~ 83 (180)
T 2igi_A 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKAST-MGDRE 83 (180)
T ss_dssp GCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCC-CCHHH
T ss_pred CcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcC-CCHHH
Confidence 4699999999999876 799999998654 5565 899999998876654 66799999999998 79999
Q ss_pred HHHHHHHhhcC-----CCEEEEeCchhhHHHHccc--------cCcccccccccccccCCCCCccHHHHHHHhc-----C
Q 008596 279 IQEEFLKLVYK-----ETILVGHSLENDLLALKIS--------HGLVIDTAVLYKHPQGGSHKTSLRVLAKKFL-----S 340 (560)
Q Consensus 279 Vq~~L~~~i~~-----~~ILVGHsL~~DL~aLki~--------Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~L-----g 340 (560)
|+.+|.+++.+ +.+|||||+.||+.+|+.. |.+++|++ +|+.|++.++ |
T Consensus 84 v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~-------------tl~~l~~~~~p~~~~~ 150 (180)
T 2igi_A 84 AELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVS-------------TLKELARRWKPEILDG 150 (180)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETH-------------HHHHHHHHHCGGGGGG
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHH-------------HHHHHHHHhChHhhhC
Confidence 99999999954 4799999999999999853 33456621 2222333322 3
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 341 REIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 341 ~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
+.. .++|+|++||+||++|++..+++
T Consensus 151 i~~---~~~H~Al~Da~ata~l~~~~~~~ 176 (180)
T 2igi_A 151 FTK---QGTHQAMDDIRESVAELAYYREH 176 (180)
T ss_dssp SCC---CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCC---cCCcCcHHHHHHHHHHHHHHHHH
Confidence 321 25899999999999999766654
No 6
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.86 E-value=2.8e-22 Score=196.92 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=126.7
Q ss_pred CcEEEEEeccccCCCC-ceEEEEEEEEecC-----------------cEE--EEEEEeCCCCCCCCcEEecCCChhhhc-
Q 008596 212 YEILALDCEMCYTNEG-LELTRVTLVDIKG-----------------QVL--LDKLVKPSNAIVDYNTRYSGITHEMLS- 270 (560)
Q Consensus 212 ~~~valDcEm~~t~~g-~eL~rVsvVd~~G-----------------~vv--lD~LVkP~~~I~dy~T~~SGIT~e~L~- 270 (560)
.++++|||||+|++.. ++|++|++|..++ +++ |+.||+|..+|+++.+++||||.+||.
T Consensus 10 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~ 89 (238)
T 1y97_A 10 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGLAR 89 (238)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHHHH
T ss_pred CeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHHhh
Confidence 4699999999999764 7999999998742 444 899999999999999999999999994
Q ss_pred -CCCCCH-HHHHHHHHHhhcC---CCEEEEeCc-hhhHHHHcc-------c---cCccccccccccccc---------CC
Q 008596 271 -GVTTSL-KDIQEEFLKLVYK---ETILVGHSL-ENDLLALKI-------S---HGLVIDTAVLYKHPQ---------GG 325 (560)
Q Consensus 271 -~~~~tl-~dVq~~L~~~i~~---~~ILVGHsL-~~DL~aLki-------~---Hp~viDT~~Ly~~~~---------g~ 325 (560)
++ +++ ++|...|.+|+.. +.+|||||. .||+.+|+. . +..++||..+++... +.
T Consensus 90 ~~~-p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~ 168 (238)
T 1y97_A 90 CRK-AGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARG 168 (238)
T ss_dssp TTC-CCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC--------
T ss_pred cCC-CccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCC
Confidence 66 678 5999999999943 289999999 999999983 1 235899988766543 22
Q ss_pred CCCccHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHcC
Q 008596 326 SHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTKLLKVLFEYG 383 (560)
Q Consensus 326 ~~k~sLk~La~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~~~~~~i~~~l~~~g 383 (560)
..+++|..|+++++|++.. +.|+|++||++|++|++..++ .+++.....+
T Consensus 169 ~~~~~L~~l~~~~~gi~~~---~~H~Al~Da~~ta~l~~~l~~-----~~~~~~~~~~ 218 (238)
T 1y97_A 169 RQGYSLGSLFHRYFRAEPS---AAHSAEGDVHTLLLIFLHRAA-----ELLAWADEQA 218 (238)
T ss_dssp --CCSHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHTHH-----HHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhCCCCc---cCccHHHHHHHHHHHHHHHHH-----HHHHHHHhcC
Confidence 2467899999977898875 389999999999999876543 4445544444
No 7
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.85 E-value=2.8e-22 Score=199.38 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=132.2
Q ss_pred CCcEEEEEeccccCCCC-ceEEEEEEEEec-C-------------------cE--EEEEEEeCCCCCCCCcEEecCCChh
Q 008596 211 PYEILALDCEMCYTNEG-LELTRVTLVDIK-G-------------------QV--LLDKLVKPSNAIVDYNTRYSGITHE 267 (560)
Q Consensus 211 ~~~~valDcEm~~t~~g-~eL~rVsvVd~~-G-------------------~v--vlD~LVkP~~~I~dy~T~~SGIT~e 267 (560)
-..+|+|||||+|++.. ++|++|++|..+ | ++ -|+.||+|..+|..+.+++||||++
T Consensus 11 ~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~ 90 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHH
T ss_pred cceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHH
Confidence 35699999999999854 799999999863 3 23 4899999999999999999999999
Q ss_pred hhcCCC-CCHH-HHHHHHHHhhcCC----CEEEEeCc-hhhHHHHcc-------c---cC-ccccccccccccc------
Q 008596 268 MLSGVT-TSLK-DIQEEFLKLVYKE----TILVGHSL-ENDLLALKI-------S---HG-LVIDTAVLYKHPQ------ 323 (560)
Q Consensus 268 ~L~~~~-~tl~-dVq~~L~~~i~~~----~ILVGHsL-~~DL~aLki-------~---Hp-~viDT~~Ly~~~~------ 323 (560)
||+++. ++++ +|..+|.+|+ .+ .+|||||. .||+.+|+. . ++ .++||..+++...
T Consensus 91 ~l~~~g~p~~~~ev~~~~~~fl-~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~ 169 (242)
T 3mxm_B 91 ELEVQGRQRFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (242)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC-
T ss_pred HHHhcCCCchhHHHHHHHHHHH-hcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCcc
Confidence 999874 5886 9999999999 56 89999995 999999983 1 12 5799988765321
Q ss_pred --CCCCCccHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHcCC
Q 008596 324 --GGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTKLLKVLFEYGK 384 (560)
Q Consensus 324 --g~~~k~sLk~La~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~~~~~~i~~~l~~~g~ 384 (560)
+...+++|..||++|+|++... .|+|++||+||++|+++.. +.+++++.+.++
T Consensus 170 ~~~~~~~~~L~~l~~~~~gi~~~~---~H~Al~Da~ata~l~~~~~-----~~~~~~~~~~~~ 224 (242)
T 3mxm_B 170 GNGSRKSYSLGSIYTRLYWQAPTD---SHTAEGDDLTLLSICQWKP-----QALLQWVDEHAR 224 (242)
T ss_dssp -----CCCSHHHHHHHHHSSCCSS---TTSHHHHHHHHHHHHTSSH-----HHHHHHHHHHCE
T ss_pred ccCCCCCcCHHHHHHHHhCCCCCC---CcChHHHHHHHHHHHHHHH-----HHHHHHHHhcCC
Confidence 2245678999998888998763 7999999999999986433 246666666554
No 8
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=197.65 Aligned_cols=154 Identities=15% Similarity=0.194 Sum_probs=128.6
Q ss_pred CcEEEEEeccccCCC-----CceEEEEEEEEec---CcEE--EEEEEeCCC--CCCCCcEEecCCChhhhcCCCCCHHHH
Q 008596 212 YEILALDCEMCYTNE-----GLELTRVTLVDIK---GQVL--LDKLVKPSN--AIVDYNTRYSGITHEMLSGVTTSLKDI 279 (560)
Q Consensus 212 ~~~valDcEm~~t~~-----g~eL~rVsvVd~~---G~vv--lD~LVkP~~--~I~dy~T~~SGIT~e~L~~~~~tl~dV 279 (560)
..+|+|||||+|.+. .++|++|++|..+ |+++ |+.||+|.. +|.++.+++||||.+||+++ +++.+|
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~a-p~~~ev 156 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRA-DTFPQV 156 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTS-BCHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcC-CCHHHH
Confidence 469999999999862 4699999999864 5777 899999998 99999999999999999998 799999
Q ss_pred HHHHHHhhcCC------CEEEEeCchhhHH-HHcc-------ccC----cccccccccccccCCC-CCccHHHHHHHhcC
Q 008596 280 QEEFLKLVYKE------TILVGHSLENDLL-ALKI-------SHG----LVIDTAVLYKHPQGGS-HKTSLRVLAKKFLS 340 (560)
Q Consensus 280 q~~L~~~i~~~------~ILVGHsL~~DL~-aLki-------~Hp----~viDT~~Ly~~~~g~~-~k~sLk~La~~~Lg 340 (560)
+.+|.+++.+. .+|||||..||+. +|+. ..| .++||..+|+...+.+ ..++|..|+++ +|
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cC
Confidence 99999999544 5999999999999 9973 233 4899988887654322 24789999986 69
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 341 REIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 341 ~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
++... ..|+|++||++|++|++..+++
T Consensus 236 i~~~g--~~H~Al~DA~ata~l~~~l~~~ 262 (299)
T 1zbh_A 236 MDYDG--RPNCGLDDSKNIARIAVRMLQD 262 (299)
T ss_dssp CCCCS--CTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC--CCCChHHHHHHHHHHHHHHHHh
Confidence 88752 3799999999999999766655
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.84 E-value=3.8e-21 Score=187.79 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=125.4
Q ss_pred CcEEEEEeccccCCCC-ceEEEEEEEEe----cCcE----EEEEEEeC--CCCCCCCcEEecCCChh-hhcCCCCCHHHH
Q 008596 212 YEILALDCEMCYTNEG-LELTRVTLVDI----KGQV----LLDKLVKP--SNAIVDYNTRYSGITHE-MLSGVTTSLKDI 279 (560)
Q Consensus 212 ~~~valDcEm~~t~~g-~eL~rVsvVd~----~G~v----vlD~LVkP--~~~I~dy~T~~SGIT~e-~L~~~~~tl~dV 279 (560)
..+++|||||+|++.. ++|++|++|.. +|++ .|+.||+| ..+|+++.+++||||++ +++++ +++.+|
T Consensus 29 ~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~-~~~~~v 107 (224)
T 2f96_A 29 YLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMA-VQEEAA 107 (224)
T ss_dssp EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCC-BCHHHH
T ss_pred CcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcC-CCHHHH
Confidence 4689999999999876 79999999986 5775 28899999 57999999999999997 58887 799999
Q ss_pred HHHHHHhhc--------CCCEEEEeCchhhHHHHcc-------c-----cCcccccccccccccCCCCCccHHHHHHHhc
Q 008596 280 QEEFLKLVY--------KETILVGHSLENDLLALKI-------S-----HGLVIDTAVLYKHPQGGSHKTSLRVLAKKFL 339 (560)
Q Consensus 280 q~~L~~~i~--------~~~ILVGHsL~~DL~aLki-------~-----Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~L 339 (560)
..++.+++. ++.+|||||+.||+.+|+. . +..++||..+++...+ +++|..||++ +
T Consensus 108 ~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~---~~~L~~l~~~-~ 183 (224)
T 2f96_A 108 LTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG---QTVLAKACQA-A 183 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHHHH-T
T ss_pred HHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC---CCCHHHHHHH-c
Confidence 999998884 4789999999999999973 1 1257999988876543 3579999986 6
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 340 SREIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 340 g~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
|+++.. ...|+|++||++|++|++..+++
T Consensus 184 gi~~~~-~~~H~Al~Da~~ta~l~~~l~~~ 212 (224)
T 2f96_A 184 GMEFDN-REAHSARYDTEKTAELFCGIVNR 212 (224)
T ss_dssp TCCCCT-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCC-CCCCChHHHHHHHHHHHHHHHHH
Confidence 988642 24899999999999999755544
No 10
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=188.64 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=122.3
Q ss_pred CcEEEEEeccccCCCC---ceEEEEEEEEec---CcEE--EEEEEeCCC--CCCCCcEEecCCChhhhcCCCCCHHHHHH
Q 008596 212 YEILALDCEMCYTNEG---LELTRVTLVDIK---GQVL--LDKLVKPSN--AIVDYNTRYSGITHEMLSGVTTSLKDIQE 281 (560)
Q Consensus 212 ~~~valDcEm~~t~~g---~eL~rVsvVd~~---G~vv--lD~LVkP~~--~I~dy~T~~SGIT~e~L~~~~~tl~dVq~ 281 (560)
..+++||+||+|.+.. .+|++|++|..+ |+++ |+.||+|.. +|+++.+++||||++||+++ +++++|..
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a-~~~~~v~~ 109 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQ-PSLQQVLE 109 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTC-CCHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCC-CCHHHHHH
Confidence 4699999999999875 389999999764 4666 899999998 89999999999999999998 79999999
Q ss_pred HHHHhhcCCCEEEEeCc--------hhhHHH-Hc-------cccC----cccccccccccccCCCCCccHHHHHHHhcCc
Q 008596 282 EFLKLVYKETILVGHSL--------ENDLLA-LK-------ISHG----LVIDTAVLYKHPQGGSHKTSLRVLAKKFLSR 341 (560)
Q Consensus 282 ~L~~~i~~~~ILVGHsL--------~~DL~a-Lk-------i~Hp----~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~ 341 (560)
+|.+++ .+.+|||||+ .||+++ |+ +..| .++|+...|...++...+++|..|++. ||+
T Consensus 110 ~f~~~l-~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~-~gi 187 (224)
T 2xri_A 110 RVDEWM-AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKG-LSL 187 (224)
T ss_dssp HHHHHH-HHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHHH-TTC
T ss_pred HHHHHH-hhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHHH-cCC
Confidence 999999 6789999999 999997 74 2223 578954443322222223689999985 788
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 342 EIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 342 ~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
+.+. ..|+|++||++|++|++..+++
T Consensus 188 ~~~~--~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 188 QHIG--RPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp CCCS--CTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCC--CCcChHHHHHHHHHHHHHHHHc
Confidence 8752 4799999999999998655543
No 11
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.83 E-value=5e-21 Score=200.29 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=128.2
Q ss_pred CcEEEEEeccccCC-----CCceEEEEEEEEec---CcEE--EEEEEeCCC--CCCCCcEEecCCChhhhcCCCCCHHHH
Q 008596 212 YEILALDCEMCYTN-----EGLELTRVTLVDIK---GQVL--LDKLVKPSN--AIVDYNTRYSGITHEMLSGVTTSLKDI 279 (560)
Q Consensus 212 ~~~valDcEm~~t~-----~g~eL~rVsvVd~~---G~vv--lD~LVkP~~--~I~dy~T~~SGIT~e~L~~~~~tl~dV 279 (560)
..+|+|||||+|.+ ..++|++|++|..+ |+++ |+.||+|.. +|.++.+++||||.+||+++ +++.+|
T Consensus 128 ~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~a-p~~~eV 206 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRA-DTFPQV 206 (349)
T ss_dssp SEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTS-EEHHHH
T ss_pred CeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCC-CCHHHH
Confidence 57999999999985 23699999999864 5666 888999998 99999999999999999998 799999
Q ss_pred HHHHHHhhcCC------CEEEEeCchhhHH-HHcc-------ccC----cccccccccccccCCC-CCccHHHHHHHhcC
Q 008596 280 QEEFLKLVYKE------TILVGHSLENDLL-ALKI-------SHG----LVIDTAVLYKHPQGGS-HKTSLRVLAKKFLS 340 (560)
Q Consensus 280 q~~L~~~i~~~------~ILVGHsL~~DL~-aLki-------~Hp----~viDT~~Ly~~~~g~~-~k~sLk~La~~~Lg 340 (560)
+.+|.+++... .+|||||..||+. +|+. ..| .++||..+|+...+.+ ..++|..|+++ ||
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TT
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cC
Confidence 99999999544 5999999999999 9973 233 4799988887654322 24789999986 69
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 341 REIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 341 ~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
++.+. ..|+|+.||++|++|++..+++
T Consensus 286 i~~~g--~~HrAl~DA~ata~ll~~ll~~ 312 (349)
T 1zbu_A 286 MDYDG--RPHCGLDDSKNIARIAVRMLQD 312 (349)
T ss_dssp CCCCS--CTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHh
Confidence 88752 3799999999999999766555
No 12
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.83 E-value=3.9e-21 Score=198.41 Aligned_cols=165 Identities=16% Similarity=0.188 Sum_probs=130.8
Q ss_pred CCcEEEEEeccccCCC-CceEEEEEEEEecCc----------------------EEEEEEEeCCCCCCCCcEEecCCChh
Q 008596 211 PYEILALDCEMCYTNE-GLELTRVTLVDIKGQ----------------------VLLDKLVKPSNAIVDYNTRYSGITHE 267 (560)
Q Consensus 211 ~~~~valDcEm~~t~~-g~eL~rVsvVd~~G~----------------------vvlD~LVkP~~~I~dy~T~~SGIT~e 267 (560)
...||+||+||+|++. .++|++|++|..++. .-|+.||+|..+|..+.+++||||++
T Consensus 11 ~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e 90 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (314)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHH
T ss_pred cCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHH
Confidence 3569999999999985 479999999987421 24889999999999999999999999
Q ss_pred hhcCCC-CCH-HHHHHHHHHhhcCC----CEEEEeC-chhhHHHHcc-------cc----Ccccccccccc----cc---
Q 008596 268 MLSGVT-TSL-KDIQEEFLKLVYKE----TILVGHS-LENDLLALKI-------SH----GLVIDTAVLYK----HP--- 322 (560)
Q Consensus 268 ~L~~~~-~tl-~dVq~~L~~~i~~~----~ILVGHs-L~~DL~aLki-------~H----p~viDT~~Ly~----~~--- 322 (560)
||+++. ++| ++|..+|.+|+ .+ .+||||| +.||+.+|+. .. ..++||..+++ ..
T Consensus 91 ~l~~aG~P~f~~ev~~~l~~fL-~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 91 ELEVQGRQRFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHHTTCCBSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred HHHhCCCCCcHHHHHHHHHHHH-hcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 999873 478 79999999999 56 8999999 9999999983 11 13899987544 21
Q ss_pred -cCCCCCccHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHcCC
Q 008596 323 -QGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNVMRTKLLKVLFEYGK 384 (560)
Q Consensus 323 -~g~~~k~sLk~La~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~~~~~~i~~~l~~~g~ 384 (560)
++...+++|..||++|+|++.. ..|+|++||+||++|+++..+ .+++++.+..+
T Consensus 170 ~~~~~~~~~L~~L~~~l~gi~~~---~aHrAl~DA~ata~lf~~l~~-----~~l~~~~~~~~ 224 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTRLYWQAPT---DSHTAEGHVLTLLSICQWKPQ-----ALLQWVDEHAR 224 (314)
T ss_dssp ----CCCCSHHHHHHHHHSSCCS---CSSSHHHHHHHHHHHHHSSHH-----HHHHHHHHHCE
T ss_pred ccccCCCCCHHHHHHHhcCCCCC---CCCCHHHHHHHHHHHHHHHHH-----HHHHHHhhcCC
Confidence 1123578899999987899876 389999999999999874433 45566665543
No 13
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.3e-20 Score=180.82 Aligned_cols=143 Identities=16% Similarity=0.213 Sum_probs=112.5
Q ss_pred CCcEEEEEeccccCCCC-ceEEEEEEEEecCc--EE---EEEEEeCCCCC----CCCcEEe---cCCChhhhcCCCCCHH
Q 008596 211 PYEILALDCEMCYTNEG-LELTRVTLVDIKGQ--VL---LDKLVKPSNAI----VDYNTRY---SGITHEMLSGVTTSLK 277 (560)
Q Consensus 211 ~~~~valDcEm~~t~~g-~eL~rVsvVd~~G~--vv---lD~LVkP~~~I----~dy~T~~---SGIT~e~L~~~~~tl~ 277 (560)
..++++|||||+|+++. ++|++|++|..+|+ ++ |+.||+|..+| .+|.++. ||||++||+++ ++++
T Consensus 8 ~~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~-p~~~ 86 (194)
T 2gbz_A 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQ-VTHA 86 (194)
T ss_dssp CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCC-CCHH
T ss_pred CCCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcC-CCHH
Confidence 35799999999999875 79999999987776 44 66899999876 6667666 99999999998 7999
Q ss_pred HHHHHHHHhhcCCCE------EEEeCchhhHHHHccccC--------cccccccccccccCCCCCccHHHHHHHhcCc--
Q 008596 278 DIQEEFLKLVYKETI------LVGHSLENDLLALKISHG--------LVIDTAVLYKHPQGGSHKTSLRVLAKKFLSR-- 341 (560)
Q Consensus 278 dVq~~L~~~i~~~~I------LVGHsL~~DL~aLki~Hp--------~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~-- 341 (560)
+|+.+|.+|+ .+.+ |||||+.||+.+|+...+ +.+|+. +|+.|++.|+..
T Consensus 87 ev~~~~~~~l-~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~-------------~l~~l~~~~~p~~~ 152 (194)
T 2gbz_A 87 QAEAQTVAFL-GEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS-------------TIKELARRWAPAVA 152 (194)
T ss_dssp HHHHHHHHHH-TTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH-------------HHHHHHHHHCGGGG
T ss_pred HHHHHHHHHH-HHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH-------------HHHHHHHHhCHHHH
Confidence 9999999999 6777 999999999999985433 344443 455666665311
Q ss_pred -ccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 342 -EIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 342 -~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
.|.. .+.|+|++||+||++|++...++
T Consensus 153 ~~i~~-~~~H~Al~Da~ata~ll~~~~~~ 180 (194)
T 2gbz_A 153 SGFAK-SSAHTALSDVRDSIDELRHYRQF 180 (194)
T ss_dssp TTCCC-CSCCSHHHHHHHHHHHHHHHHTT
T ss_pred hCCCC-CCCcccHHHHHHHHHHHHHHHHH
Confidence 1321 25899999999999999766655
No 14
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.81 E-value=7e-20 Score=179.91 Aligned_cols=152 Identities=19% Similarity=0.219 Sum_probs=125.4
Q ss_pred CcEEEEEeccccCCCC-ceEEEEEEEEe----cCcEE----EEEEEeC--CCCCCCCcEEecCCChh-hhcCCCCCHHHH
Q 008596 212 YEILALDCEMCYTNEG-LELTRVTLVDI----KGQVL----LDKLVKP--SNAIVDYNTRYSGITHE-MLSGVTTSLKDI 279 (560)
Q Consensus 212 ~~~valDcEm~~t~~g-~eL~rVsvVd~----~G~vv----lD~LVkP--~~~I~dy~T~~SGIT~e-~L~~~~~tl~dV 279 (560)
..+++|||||+|++.. ++|++|++|.. +|++. |+.||+| ..+|+.+.+++||||++ +++++ +++.++
T Consensus 37 ~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~-~~~~~v 115 (235)
T 3v9w_A 37 FYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGA-VSGYEA 115 (235)
T ss_dssp EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCC-BCHHHH
T ss_pred CcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcC-CCHHHH
Confidence 4699999999999865 79999999985 56642 7789999 57899999999999999 99998 799999
Q ss_pred HHHHHHhhc--------CCCEEEEeCchhhHHHHccc-------c-C----cccccccccccccCCCCCccHHHHHHHhc
Q 008596 280 QEEFLKLVY--------KETILVGHSLENDLLALKIS-------H-G----LVIDTAVLYKHPQGGSHKTSLRVLAKKFL 339 (560)
Q Consensus 280 q~~L~~~i~--------~~~ILVGHsL~~DL~aLki~-------H-p----~viDT~~Ly~~~~g~~~k~sLk~La~~~L 339 (560)
..+|.+++. ++.+|||||+.||+.+|+.. . | .++||..+++...+ .++|..||++ +
T Consensus 116 l~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p---~~~L~~l~~~-~ 191 (235)
T 3v9w_A 116 LHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG---QTVLSKACQT-A 191 (235)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHHHH-H
T ss_pred HHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC---CCCHHHHHHH-c
Confidence 999999985 57999999999999999731 1 2 47899988776543 2579999986 5
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 340 SREIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 340 g~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
|+++.. ...|+|++||++|++|+...+++
T Consensus 192 gi~~~~-~~~H~Al~DA~~ta~l~~~l~~~ 220 (235)
T 3v9w_A 192 GMDFDS-TQAHSALYDTERTAVLFCEIVNR 220 (235)
T ss_dssp TCCCCT-TTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCCcChHHHHHHHHHHHHHHHHH
Confidence 888752 24899999999999999655443
No 15
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.81 E-value=1.1e-20 Score=194.48 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=125.2
Q ss_pred CcEEEEEeccccCCCC-c---eEEEEEEEEe---cCcEE----EEEEEeCCCC--CCCCcEEecCCChhhhcCCCCCHHH
Q 008596 212 YEILALDCEMCYTNEG-L---ELTRVTLVDI---KGQVL----LDKLVKPSNA--IVDYNTRYSGITHEMLSGVTTSLKD 278 (560)
Q Consensus 212 ~~~valDcEm~~t~~g-~---eL~rVsvVd~---~G~vv----lD~LVkP~~~--I~dy~T~~SGIT~e~L~~~~~tl~d 278 (560)
..+++||+||+|.+.+ + +|++|++|.. +|+++ |++||+|... |+++.+++||||.+||+++ +++++
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~a-p~~~e 97 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTA-DTFDV 97 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTS-CBHHH
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcC-CCHHH
Confidence 4699999999999875 3 9999999876 56665 7899999984 9999999999999999998 79999
Q ss_pred HHHHHHHhhcCCCEEEEeCc------hhhH-HHHcc-------ccC----cccccccccccccCC------CCCccHHHH
Q 008596 279 IQEEFLKLVYKETILVGHSL------ENDL-LALKI-------SHG----LVIDTAVLYKHPQGG------SHKTSLRVL 334 (560)
Q Consensus 279 Vq~~L~~~i~~~~ILVGHsL------~~DL-~aLki-------~Hp----~viDT~~Ly~~~~g~------~~k~sLk~L 334 (560)
|+.+|.+++ .+.+|||||+ .||+ .+|+. ..| .++||..+|+...+. ...++|..|
T Consensus 98 vl~~f~~~l-~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l 176 (308)
T 3cg7_A 98 VYEQFQQWL-ITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKM 176 (308)
T ss_dssp HHHHHHHHH-HHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHH
T ss_pred HHHHHHHHH-HhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHH
Confidence 999999999 7778999999 9999 58862 223 479999887643211 125789999
Q ss_pred HHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 335 AKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 335 a~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
+++ +|++++. ..|+|++||++|++|++..+++
T Consensus 177 ~~~-~gi~~~~--~~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 177 NEY-YDLPTIG--RAHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp HHH-TTCCCCS--CTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHH-cCCCCCC--CCcCHHHHHHHHHHHHHHHHHc
Confidence 975 7998763 3599999999999998755544
No 16
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.75 E-value=1.2e-18 Score=189.40 Aligned_cols=154 Identities=18% Similarity=0.093 Sum_probs=122.0
Q ss_pred CcEEEEEeccccCCCC-ceEEEEEEEEe--cCcEE---EEEEEeCCCCC--CCCcEEecCCChhhhcCCCCCHHHHHHHH
Q 008596 212 YEILALDCEMCYTNEG-LELTRVTLVDI--KGQVL---LDKLVKPSNAI--VDYNTRYSGITHEMLSGVTTSLKDIQEEF 283 (560)
Q Consensus 212 ~~~valDcEm~~t~~g-~eL~rVsvVd~--~G~vv---lD~LVkP~~~I--~dy~T~~SGIT~e~L~~~~~tl~dVq~~L 283 (560)
..+|+|||||+|++.. ++|++|++|.. +|+++ ++.||+|..+| ....+.+||||++||.+++..+.+|..+|
T Consensus 9 ~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~f 88 (482)
T 2qxf_A 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARI 88 (482)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHHH
Confidence 4699999999999876 79999999986 47777 99999999988 45678999999999998766679999999
Q ss_pred HHhhc-CCCEEEEeC-chhhHHHHccc---------c------Cccccccccccccc-----C--------CCCCccHHH
Q 008596 284 LKLVY-KETILVGHS-LENDLLALKIS---------H------GLVIDTAVLYKHPQ-----G--------GSHKTSLRV 333 (560)
Q Consensus 284 ~~~i~-~~~ILVGHs-L~~DL~aLki~---------H------p~viDT~~Ly~~~~-----g--------~~~k~sLk~ 333 (560)
.+++. ++++||||| +.||+.+|+.. . ..++||..+++... + ....++|..
T Consensus 89 ~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~ 168 (482)
T 2qxf_A 89 HSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEH 168 (482)
T ss_dssp HHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHH
T ss_pred HHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHH
Confidence 99995 489999999 99999999831 1 23578876543211 0 123568999
Q ss_pred HHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 334 LAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 334 La~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
|++. +|++.. ++|+|++||+||++|++...++
T Consensus 169 L~~~-~Gi~~~---~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 169 LTKA-NGIEHS---NAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHH-TTCCCC------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCCC---CCCCHHHHHHHHHHHHHHHHHh
Confidence 9985 698864 4799999999999998766554
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.73 E-value=1.2e-18 Score=167.43 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=108.9
Q ss_pred CCcEEEEEeccccCCCC-ceEEEEEEEEecC--cEE---EEEEEe-CCC---CCCCCc---EEecCCChhhhcCCCCCHH
Q 008596 211 PYEILALDCEMCYTNEG-LELTRVTLVDIKG--QVL---LDKLVK-PSN---AIVDYN---TRYSGITHEMLSGVTTSLK 277 (560)
Q Consensus 211 ~~~~valDcEm~~t~~g-~eL~rVsvVd~~G--~vv---lD~LVk-P~~---~I~dy~---T~~SGIT~e~L~~~~~tl~ 277 (560)
..++|+|||||||+++. ++|++|++|-.+| +++ +..+|+ |.. .+.++. +.+||||.+||+++ ++++
T Consensus 8 ~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~-p~~~ 86 (186)
T 3tr8_A 8 DDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSS-VDEV 86 (186)
T ss_dssp TTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCC-CCHH
T ss_pred CCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcC-CCHH
Confidence 34699999999999865 7999999995555 443 334686 542 245554 45679999999998 7999
Q ss_pred HHHHHHHHhhc-----CCCEEEEeCchhhHHHHcc--------ccCcccc--ccc-ccccccCCCCCccHHHHHHHhcCc
Q 008596 278 DIQEEFLKLVY-----KETILVGHSLENDLLALKI--------SHGLVID--TAV-LYKHPQGGSHKTSLRVLAKKFLSR 341 (560)
Q Consensus 278 dVq~~L~~~i~-----~~~ILVGHsL~~DL~aLki--------~Hp~viD--T~~-Ly~~~~g~~~k~sLk~La~~~Lg~ 341 (560)
+|..++++|+. ++++|||||+.||+.+|+. .|.+++| |.. |.+... |.+.. |+
T Consensus 87 ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~-----P~~~~------~~ 155 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWA-----PQIAA------AH 155 (186)
T ss_dssp HHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHC-----HHHHT------TS
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHC-----ccccc------cC
Confidence 99999999994 7899999999999999983 2567889 554 544432 22211 44
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 342 EIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 342 ~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
+.. +.|+|++||+||.+++++..++
T Consensus 156 ~~~---~~HrAl~Da~ati~~l~~y~~~ 180 (186)
T 3tr8_A 156 IKE---SQHLALQDIRDSIEELRYYRAH 180 (186)
T ss_dssp CCC---CCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCC---CCcChHHHHHHHHHHHHHHHHH
Confidence 433 5899999999999999887765
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.47 E-value=1.2e-06 Score=97.40 Aligned_cols=141 Identities=20% Similarity=0.240 Sum_probs=96.0
Q ss_pred cEEEEEeccccCCC-CceEEEEEEEEecCcEEEEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHHhhcCC-
Q 008596 213 EILALDCEMCYTNE-GLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKE- 290 (560)
Q Consensus 213 ~~valDcEm~~t~~-g~eL~rVsvVd~~G~vvlD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~~i~~~- 290 (560)
.+|++|+||++.+. ..+|+.|+++-..|+.+ ||.+.. .+ .|+ .+. .+++++...|.+++...
T Consensus 27 ~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~---yip~~~---~~----~~~-----~~~-l~~~~vl~~L~~~L~d~~ 90 (605)
T 2kfn_A 27 PVFAFDTETDSLDNISANLVGLSFAIEPGVAA---YIPVAH---DY----LDA-----PDQ-ISRERALELLKPLLEDEK 90 (605)
T ss_dssp SSEEEEEEESCSCTTTCCEEEEEEEEETTEEE---EEECCC---CS----TTC-----CCC-CCHHHHHHHHHHHHTCTT
T ss_pred CeEEEEEecCCCCcccCceEEEEEEEcCCcEE---EEeccc---cc----ccc-----ccc-cCHHHHHHHHHHHHcCCC
Confidence 47999999999976 45898988885566654 452221 11 122 223 46889999999999432
Q ss_pred CEEEEeCchhhHHHHcc---c-cCcccccccccccccCCCCCccHHHHHHHhcCcccc-------cCCC-----------
Q 008596 291 TILVGHSLENDLLALKI---S-HGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-------QSGF----------- 348 (560)
Q Consensus 291 ~ILVGHsL~~DL~aLki---~-Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ-------~~~~----------- 348 (560)
.++||||+.+|+.+|+- . .+.++||.++.....+...+++|..||+.|||...- .+..
T Consensus 91 i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le~ 170 (605)
T 2kfn_A 91 ALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 170 (605)
T ss_dssp SCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHHH
T ss_pred CeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHHH
Confidence 38999999999999974 2 224799987654433223468899999999887531 1100
Q ss_pred -CCChHHHHHHHHHHHHHHHHh
Q 008596 349 -GHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 349 -~HdSlEDA~Atl~L~~~kl~~ 369 (560)
.|.+.+||.++++|+....++
T Consensus 171 ~~~yAa~Da~~~~~L~~~L~~~ 192 (605)
T 2kfn_A 171 AGRYAAEDADVTLQLHLKMWPD 192 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 134789999999998655444
No 19
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.37 E-value=2.2e-06 Score=82.56 Aligned_cols=149 Identities=15% Similarity=0.052 Sum_probs=94.8
Q ss_pred CCcEEEEEeccccCCCCceEEEEEEEEecCcEEEEEEEeC-CCCCCCCcEE--ecCCChhhhcCCCCCHHHHHHHHHHhh
Q 008596 211 PYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKP-SNAIVDYNTR--YSGITHEMLSGVTTSLKDIQEEFLKLV 287 (560)
Q Consensus 211 ~~~~valDcEm~~t~~g~eL~rVsvVd~~G~vvlD~LVkP-~~~I~dy~T~--~SGIT~e~L~~~~~tl~dVq~~L~~~i 287 (560)
+..=|.+|||+++.....+|+.|++|..+|...|-..--. ...+.+|+.+ +.++...-.... .++++++.+|.+|+
T Consensus 21 ~m~r~FlDTEFt~d~~~~eLISIGlV~EdGrEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~-~s~~~i~~~L~~FL 99 (190)
T 4hec_A 21 SMVRYFYDTEFIEDGHTIELISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLW-RSRQQIRLDLEEFL 99 (190)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEEEEEETTSCEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTE-ECHHHHHHHHHHHT
T ss_pred ceeEEEEeeeecCCCCCCCEEEEEEEcCCCCEEEEEecCCChhhCcHHHHhccccCCCCCccccc-CCHHHHHHHHHHHH
Confidence 4456889999998666679999999999998766443211 2234455432 455543333333 47999999999999
Q ss_pred cCC----CEEEEeCchhhHHHHccccCcccccccccccccCCCCCccHHHHHHHhcCcc-ccc-CCCCCChHHHHHHHHH
Q 008596 288 YKE----TILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSRE-IQQ-SGFGHDSTEDARAAME 361 (560)
Q Consensus 288 ~~~----~ILVGHsL~~DL~aLki~Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~-IQ~-~~~~HdSlEDA~Atl~ 361 (560)
... ..|+++...+|..+|...-....+ .+.. -+.+...|+.+... +|.. +.. .++.|+|+.|||+.+.
T Consensus 100 ~~~~~~~~eLwa~~~~yD~~~L~ql~g~m~~----lP~~-~p~~~~dlr~~~~~-~g~~~lp~~~~~~H~AL~DAR~n~~ 173 (190)
T 4hec_A 100 RIDGTDSIELWAWVGAYDHVALCQLWGPMTA----LPPT-VPRFTRELRQLWED-RGCPRMPPRPRDVHDALVDARDQLR 173 (190)
T ss_dssp TTTSSCEEEEEESSCHHHHHHHHTTTSSGGG----SCTT-SCSSCEEHHHHHHH-TTCCCCCC-----CCHHHHHHHHHH
T ss_pred HhcCCCCCEEEEecccccHHHHHHHhccccc----CCcc-cchhhHHHHHHHHH-cCCCCCCCCCCCCcCcHHHHHHHHH
Confidence 432 259999999999999742222211 1111 12234568888764 4553 221 2356999999999998
Q ss_pred HHHHH
Q 008596 362 LALLK 366 (560)
Q Consensus 362 L~~~k 366 (560)
.++..
T Consensus 174 ~~~~~ 178 (190)
T 4hec_A 174 RFRLI 178 (190)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87543
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.05 E-value=1.8e-06 Score=97.65 Aligned_cols=129 Identities=18% Similarity=0.132 Sum_probs=86.8
Q ss_pred EEEEEeccccCCCC-ceEEEEEEEEec-CcEEEEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHHhhcCCC
Q 008596 214 ILALDCEMCYTNEG-LELTRVTLVDIK-GQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKET 291 (560)
Q Consensus 214 ~valDcEm~~t~~g-~eL~rVsvVd~~-G~vvlD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~~i~~~~ 291 (560)
+||||+||+|+... ++|+-|.+++.. |++. ++.|. .++++...|..++.++.
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~---~~~p~-----------------------~i~~~l~~L~~~l~~~~ 54 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYV---SYRPS-----------------------DFGAYLDALEAEVARGG 54 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEE---EECGG-----------------------GHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEE---EEChH-----------------------HHHHHHHHHHHHHhcCC
Confidence 58999999999864 678888888754 3332 22221 23456677888886567
Q ss_pred EEEEeCc-hhhHHHHccc-----------c-CcccccccccccccCCCCCccHHHHHHHhc-------Cccc-----c--
Q 008596 292 ILVGHSL-ENDLLALKIS-----------H-GLVIDTAVLYKHPQGGSHKTSLRVLAKKFL-------SREI-----Q-- 344 (560)
Q Consensus 292 ILVGHsL-~~DL~aLki~-----------H-p~viDT~~Ly~~~~g~~~k~sLk~La~~~L-------g~~I-----Q-- 344 (560)
++||||+ .||+.+|+.. . ..++||.++.........+++|..||+.|| |... .
T Consensus 55 ~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~ 134 (698)
T 1x9m_A 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYK 134 (698)
T ss_dssp CEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHH
T ss_pred eEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHH
Confidence 8999998 9999999522 2 258999886544322234678999998887 5322 1
Q ss_pred ---------cCCC--------------CCChHHHHHHHHHHHHHHHH
Q 008596 345 ---------QSGF--------------GHDSTEDARAAMELALLKIR 368 (560)
Q Consensus 345 ---------~~~~--------------~HdSlEDA~Atl~L~~~kl~ 368 (560)
.+.. .|.+.+||.++++|+....+
T Consensus 135 ~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~ 181 (698)
T 1x9m_A 135 DDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLS 181 (698)
T ss_dssp HHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 24578999999999865554
No 21
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=97.73 E-value=0.0001 Score=79.05 Aligned_cols=124 Identities=10% Similarity=-0.026 Sum_probs=77.6
Q ss_pred cEEEEEeccccCCCC-ceEEEEEEEEecCcEEEEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHHhhc-CC
Q 008596 213 EILALDCEMCYTNEG-LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVY-KE 290 (560)
Q Consensus 213 ~~valDcEm~~t~~g-~eL~rVsvVd~~G~vvlD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~~i~-~~ 290 (560)
..||||+|+...... ..++-|.+-...+.. +|.|-.. + .+ ...|..++. ++
T Consensus 130 ~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~----lidpl~l---------~---~~-----------l~~L~~lL~dp~ 182 (428)
T 3saf_A 130 QEFAVNLEHHSYRSFLGLTCLMQISTRTEDF----IIDTLEL---------R---SD-----------MYILNESLTDPA 182 (428)
T ss_dssp SEEEEEEEEECTTCSSCEEEEEEEECSSCEE----EEETTTT---------G---GG-----------GGGGHHHHTCTT
T ss_pred CeEEEEEEecCCCCCCCeEEEEEEEeCCcEE----EEEeccc---------h---hh-----------HHHHHHHHcCCC
Confidence 589999999876543 345555554433322 3444321 0 11 123455553 34
Q ss_pred CEEEEeCchhhHHHHc----cccCcccccccccccccCCCCCccHHHHHHHhcCcccccCCC----CC---------ChH
Q 008596 291 TILVGHSLENDLLALK----ISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF----GH---------DST 353 (560)
Q Consensus 291 ~ILVGHsL~~DL~aLk----i~Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~----~H---------dSl 353 (560)
-+-|||++.+|+.+|. +.-..++||.+..... +.. +.+|..|+++|||+.+..+.. +. -|.
T Consensus 183 i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL-~~~-~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA 260 (428)
T 3saf_A 183 IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL-NLG-RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYAR 260 (428)
T ss_dssp SEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHT-TCS-CCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHH
T ss_pred ceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHh-CCC-CCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHHHH
Confidence 4569999999999995 2223588998754433 332 479999999999998865211 11 245
Q ss_pred HHHHHHHHHHHH
Q 008596 354 EDARAAMELALL 365 (560)
Q Consensus 354 EDA~Atl~L~~~ 365 (560)
+||.++++|+..
T Consensus 261 ~DA~~ll~L~~~ 272 (428)
T 3saf_A 261 DDTHYLLYIYDK 272 (428)
T ss_dssp HHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888743
No 22
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.67 E-value=3.3e-05 Score=85.13 Aligned_cols=116 Identities=14% Similarity=0.022 Sum_probs=83.5
Q ss_pred cEEEEEeccccCCCC-ceEEEEEEEEecCcEEEEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHHhhcCCC
Q 008596 213 EILALDCEMCYTNEG-LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKET 291 (560)
Q Consensus 213 ~~valDcEm~~t~~g-~eL~rVsvVd~~G~vvlD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~~i~~~~ 291 (560)
+.+|+|+||.+.+.- .+++.|++-. .|+. + +| . ++...|.+++ .+.
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~-~~~a-~--~i----------------~------------~~l~~l~~~l-~d~ 57 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAAR-GGRV-H--RA----------------P------------EPYKALRDLK-EAR 57 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEE-TTEE-E--EC----------------S------------SHHHHHTTCS-SBC
T ss_pred CceEEEEEecCCccCcccEEEEEEEc-CCEE-E--Ee----------------h------------hhHHHHHHHH-cCC
Confidence 468999999998764 4677777763 4443 2 11 0 2457788999 558
Q ss_pred EEEEeCchhhHHHHccccCcccccccccccccCCCCCccHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHh
Q 008596 292 ILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 292 ILVGHsL~~DL~aLki~Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
.+||||+.+|+....+.-+.++||.++..-.. +. +++|..||++|++. + +|.+.+||.++++|+....++
T Consensus 58 ~kV~hn~K~Dl~~~Gi~~~~~fDT~laAyLL~-p~-~~~L~~La~~yl~~-~-----gk~a~~DA~~t~~L~~~L~~~ 127 (540)
T 4dfk_A 58 GLLAKDLSVLALREGLGLPPGDDPMLLAYLLD-PS-NTTPEGVARRYGGE-W-----TEEAGERAALSERLFANLWGR 127 (540)
T ss_dssp STTHHHHHHHHHHTTCCCCBCCCHHHHHHHHC-TT-CCCHHHHHHHHTSC-C-----CSCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeccHHHHHHcCCCCCcceeHHHHHHHhC-CC-CCCHHHHHHHHhhh-h-----ccchHHHHHHHHHHHHHHHHH
Confidence 89999999999933332225789987644432 33 68999999999876 2 688999999999998655444
No 23
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=97.21 E-value=0.00049 Score=66.82 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=58.5
Q ss_pred HHHhh-cCCCEEEEeCchhhHHHHcccc----CcccccccccccccCC--CCCccHHHHHHHhcCccc-cc----CC---
Q 008596 283 FLKLV-YKETILVGHSLENDLLALKISH----GLVIDTAVLYKHPQGG--SHKTSLRVLAKKFLSREI-QQ----SG--- 347 (560)
Q Consensus 283 L~~~i-~~~~ILVGHsL~~DL~aLki~H----p~viDT~~Ly~~~~g~--~~k~sLk~La~~~Lg~~I-Q~----~~--- 347 (560)
|.+|+ +++-+.|||++.+|+..|+-.+ ..++||..++....|. ....+|+.|++.+||.++ .. +.
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~ 179 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK 179 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC
Confidence 55555 3456789999999999997532 3689998766444343 356799999999999999 21 10
Q ss_pred -----CCCChHHHHHHHHHHHHH
Q 008596 348 -----FGHDSTEDARAAMELALL 365 (560)
Q Consensus 348 -----~~HdSlEDA~Atl~L~~~ 365 (560)
+-+=|..||.++.+|+..
T Consensus 180 pLs~~Qi~YAA~Da~~l~~l~~~ 202 (206)
T 1vk0_A 180 AGPEEQLEAAAIEGWLIVNVWDQ 202 (206)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 123356788888888743
No 24
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.09 E-value=0.00029 Score=67.27 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=54.5
Q ss_pred HHHHhhcC-CCEEEEeCchhhHHHHcc----ccCcccccccccccccCCCCCccHHHHHHHhcCcccccC---------C
Q 008596 282 EFLKLVYK-ETILVGHSLENDLLALKI----SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQS---------G 347 (560)
Q Consensus 282 ~L~~~i~~-~~ILVGHsL~~DL~aLki----~Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~---------~ 347 (560)
.|..++.. +-+.|||++.+|+.+|+- .-..++|.+.++....++...++|..|++.|||..+..+ .
T Consensus 87 ~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~ 166 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSN 166 (208)
T ss_dssp HHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTS
T ss_pred HHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCC
Confidence 46667733 456799999999999974 222488944444443334457899999999988776221 0
Q ss_pred CC------CChHHHHHHHHHHHH
Q 008596 348 FG------HDSTEDARAAMELAL 364 (560)
Q Consensus 348 ~~------HdSlEDA~Atl~L~~ 364 (560)
.. +-+..||.++++|+.
T Consensus 167 ~~L~~~q~~YAa~Da~~~~~L~~ 189 (208)
T 2e6m_A 167 FPLTEDQKLYAATDAYAGLIIYQ 189 (208)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 114578888888874
No 25
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=96.99 E-value=0.0037 Score=65.34 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=58.6
Q ss_pred HHHHhhcC-CCEEEEeCchhhHHHHcc----ccCcccccccccccccCCCCCccHHHHHHHhcCcccccCCC----CC--
Q 008596 282 EFLKLVYK-ETILVGHSLENDLLALKI----SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF----GH-- 350 (560)
Q Consensus 282 ~L~~~i~~-~~ILVGHsL~~DL~aLki----~Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~----~H-- 350 (560)
.|.+++.. +-+.||||+.+|+.+|.- ....++||....... ++...++|..|++.|||..+..+.. ..
T Consensus 65 ~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL-~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rp 143 (375)
T 1yt3_A 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 (375)
T ss_dssp HHHHHHHCTTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHT-TCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSS
T ss_pred HHHHHHcCCCceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHc-CCCCChhHHHHHHHHcCCCCCCCcccCCCCCCC
Confidence 46666644 446899999999999963 223678998754333 4445789999999999988754210 01
Q ss_pred -C------hHHHHHHHHHHHHHHHHh
Q 008596 351 -D------STEDARAAMELALLKIRN 369 (560)
Q Consensus 351 -d------SlEDA~Atl~L~~~kl~~ 369 (560)
. +..||.++++|+....++
T Consensus 144 L~~~q~~YAa~Da~~l~~L~~~L~~~ 169 (375)
T 1yt3_A 144 LTERQCEYAAADVWYLLPITAKLMVE 169 (375)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 347888888887544433
No 26
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=96.41 E-value=0.011 Score=62.67 Aligned_cols=85 Identities=15% Similarity=0.038 Sum_probs=56.7
Q ss_pred HHHhhcC-CCEEEEeCchhhHHHHcc----ccCcccccccccccccCCCCCccHHHHHHHhcCcccccCCC----CC---
Q 008596 283 FLKLVYK-ETILVGHSLENDLLALKI----SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF----GH--- 350 (560)
Q Consensus 283 L~~~i~~-~~ILVGHsL~~DL~aLki----~Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~----~H--- 350 (560)
|..++.. +-+-|||++.+|+.+|.- .-..++||.+..... ++. +++|..|++.|||..+..+.. ..
T Consensus 151 L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL-~~~-~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL 228 (410)
T 2hbj_A 151 LNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAI-GLP-RHSLAYLLENFANFKTSKKYQLADWRIRPL 228 (410)
T ss_dssp GHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHH-TCS-CCSHHHHHHHHSCCCCCCTTTTSCTTCSSC
T ss_pred HHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHh-CCC-ccCHHHHHHHHcCCCCCccccccCCCCCCC
Confidence 5566633 445799999999999963 223489998754433 332 688999999999988754210 01
Q ss_pred C------hHHHHHHHHHHHHHHHHh
Q 008596 351 D------STEDARAAMELALLKIRN 369 (560)
Q Consensus 351 d------SlEDA~Atl~L~~~kl~~ 369 (560)
. +..||.++++|+....++
T Consensus 229 ~~~q~~YAa~Da~~ll~L~~~L~~~ 253 (410)
T 2hbj_A 229 SKPMTAAARADTHFLLNIYDQLRNK 253 (410)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 357888888887544443
No 27
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=96.25 E-value=0.0021 Score=71.59 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=81.5
Q ss_pred EEEEEeccccCCCC-ceEEEEEEEEecCcEEEEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHHhhc-CCC
Q 008596 214 ILALDCEMCYTNEG-LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVY-KET 291 (560)
Q Consensus 214 ~valDcEm~~t~~g-~eL~rVsvVd~~G~vvlD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~~i~-~~~ 291 (560)
-.++|+|+.+.+.. .+|+.|++-...+ . .||.+.. ..+...|..++. ++.
T Consensus 31 ~~aldtE~~~~~~~~a~Lvgisla~~~~-a---~yIp~~~------------------------~~~l~~Lk~lLed~~i 82 (592)
T 3pv8_A 31 KAALVVEVVEENYHDAPIVGIAVVNEHG-R---FFLRPET------------------------ALADPQFVAWLGDETK 82 (592)
T ss_dssp EEEEEEECCSSSCTTCCCCEEEEEETTE-E---EEECHHH------------------------HTTCHHHHHHHTCTTS
T ss_pred CcEEEEEEcCCccCcccEEEEEEEcCCc-e---EEEccch------------------------hhHHHHHHHHHhCCCC
Confidence 45899999998765 4677787765432 2 2442110 112345666663 345
Q ss_pred EEEEeCchhhHHHHccc----cCcccccccccccccCCCCCccHHHHHHHhcCcccccC----CCC------------CC
Q 008596 292 ILVGHSLENDLLALKIS----HGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQS----GFG------------HD 351 (560)
Q Consensus 292 ILVGHsL~~DL~aLki~----Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~----~~~------------Hd 351 (560)
..||||+.+|+.+|+-. ...+.||.+...-..+....++|..||++|||..+... +.| +-
T Consensus 83 ~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~Y 162 (592)
T 3pv8_A 83 KKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEH 162 (592)
T ss_dssp EEEESSHHHHHHHHHHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHH
T ss_pred eEEEechHHHHHHHHHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHHH
Confidence 79999999999999731 23478998653322221235789999999999886421 111 23
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 008596 352 STEDARAAMELALLKIRN 369 (560)
Q Consensus 352 SlEDA~Atl~L~~~kl~~ 369 (560)
+.+||.++++|+....++
T Consensus 163 Aa~DA~~l~~L~~~L~~~ 180 (592)
T 3pv8_A 163 LVRKAAAIWELERPFLDE 180 (592)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999999997554443
No 28
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=96.20 E-value=0.028 Score=59.03 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=73.0
Q ss_pred CCcEEEEEeccccC-----C-CCceEEEEEEEEecCcE--EEEEEEeCC-CCCCCCcE-------Eec--CCChhh---h
Q 008596 211 PYEILALDCEMCYT-----N-EGLELTRVTLVDIKGQV--LLDKLVKPS-NAIVDYNT-------RYS--GITHEM---L 269 (560)
Q Consensus 211 ~~~~valDcEm~~t-----~-~g~eL~rVsvVd~~G~v--vlD~LVkP~-~~I~dy~T-------~~S--GIT~e~---L 269 (560)
+.+++++|+|+.+. + ..++|..||+++..+.. ++ .+|.++ ....+|.. .++ .-.+.. +
T Consensus 105 ~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v 183 (388)
T 1noy_A 105 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVF-DLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRV 183 (388)
T ss_dssp GCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEE-EECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTE
T ss_pred CeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEE-EEeeccCCCCCccccccccccccccccccccccCCCe
Confidence 46799999999871 1 12489999999875543 22 234432 21111110 000 001110 1
Q ss_pred --cCCCCCHHHHHHHHHHhhc--CCCEEEEeCc-hhhHHHHccc----cC------------------------------
Q 008596 270 --SGVTTSLKDIQEEFLKLVY--KETILVGHSL-ENDLLALKIS----HG------------------------------ 310 (560)
Q Consensus 270 --~~~~~tl~dVq~~L~~~i~--~~~ILVGHsL-~~DL~aLki~----Hp------------------------------ 310 (560)
... .+=.++...+.+++. .-.||||||. .|||.+|.-. +.
T Consensus 184 ~v~~~-~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i 262 (388)
T 1noy_A 184 IYMPF-DNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSI 262 (388)
T ss_dssp EEEEE-SCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEE
T ss_pred EEEEc-CCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEE
Confidence 112 244566777777772 3469999998 7799876410 00
Q ss_pred --c-cccccccccc-ccCCCCCccHHHHHHHhcCcc
Q 008596 311 --L-VIDTAVLYKH-PQGGSHKTSLRVLAKKFLSRE 342 (560)
Q Consensus 311 --~-viDT~~Ly~~-~~g~~~k~sLk~La~~~Lg~~ 342 (560)
+ ++|+..+++. ...+...++|..+|+++||..
T Consensus 263 ~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~ 298 (388)
T 1noy_A 263 DGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKG 298 (388)
T ss_dssp TTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCC
T ss_pred cCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCC
Confidence 0 3455544444 122234688999999999875
No 29
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=96.16 E-value=0.041 Score=58.94 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=58.9
Q ss_pred HHHHHhhcCCCEEEEeCchhhHHHHc---cccCcccccccccccccCCCCCccHHHHHHHhcCcccccCCC-------CC
Q 008596 281 EEFLKLVYKETILVGHSLENDLLALK---ISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF-------GH 350 (560)
Q Consensus 281 ~~L~~~i~~~~ILVGHsL~~DL~aLk---i~Hp~viDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~-------~H 350 (560)
..|..++ .+...|||++.+|+.+|+ +..+.++||... ....++. +++|..|++.|||..+..+.. .-
T Consensus 85 ~~L~~lL-~d~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lA-a~lL~~~-~~gL~~L~~~~lg~~~~K~~~~sdw~~rpL 161 (440)
T 3cym_A 85 NDFNRAV-GDAVWILHDSLQDLPGFDELGMEPQRLFDTEIA-ARLLGLK-RFGLAAVTEHFLGLTLAKEHSAADWSYRPL 161 (440)
T ss_dssp HHHHHHH-TTCEEEESSHHHHHHHHHHHTCCCCEEEEHHHH-HHHTTCS-SCSHHHHHHHHHCEECCCCCTTCCTTCSSC
T ss_pred HHHHHHH-CCCCEEEEcCHHHHHHHHHcCCcCCceehHHHH-HHHhCCC-CCCHHHHHHHHhCCCcccccccCCCcCCCC
Confidence 3577777 455799999999999996 223367899543 3333443 789999999999987654210 11
Q ss_pred C------hHHHHHHHHHHHHHHHHh
Q 008596 351 D------STEDARAAMELALLKIRN 369 (560)
Q Consensus 351 d------SlEDA~Atl~L~~~kl~~ 369 (560)
. +.+||.++++|+....++
T Consensus 162 s~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 162 PRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 458888888887554444
No 30
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=96.13 E-value=0.0077 Score=68.93 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=83.2
Q ss_pred CCcEEEEEeccccC---CC-CceEEEEEEEEecCcEEEEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHHh
Q 008596 211 PYEILALDCEMCYT---NE-GLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKL 286 (560)
Q Consensus 211 ~~~~valDcEm~~t---~~-g~eL~rVsvVd~~G~vvlD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~~ 286 (560)
+.+++++|+|+++. ++ .++|+.||.++..+..++- +.+|..+.+... .+=.++...+.++
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t---------------~~~i~~~~v~~~-~~E~~LL~~f~~~ 197 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVIT---------------WKKIDLPYVDVV-STEKEMIKRFLRV 197 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEE---------------SSCCCCSSEEEC-SCHHHHHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEe---------------eccccccceEEc-CCHHHHHHHHHHH
Confidence 56899999999983 22 2689999988766543321 011221223333 3555666666666
Q ss_pred hcC--CCEEEEeCc-hhhHHHHccc---c----C------------------------cccccccccccccCCCCCccHH
Q 008596 287 VYK--ETILVGHSL-ENDLLALKIS---H----G------------------------LVIDTAVLYKHPQGGSHKTSLR 332 (560)
Q Consensus 287 i~~--~~ILVGHsL-~~DL~aLki~---H----p------------------------~viDT~~Ly~~~~g~~~k~sLk 332 (560)
+.. -.+|||||. .||+.+|.-. | . .++|+..+++... ....++|.
T Consensus 198 i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~-~l~sysL~ 276 (775)
T 1qht_A 198 VREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI-NLPTYTLE 276 (775)
T ss_dssp HHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-CCSCCCHH
T ss_pred HHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-CcCcCCHH
Confidence 632 249999997 6799887621 1 0 1345544443322 22357899
Q ss_pred HHHHHhcCccccc-C--------CCC-------CChHHHHHHHHHHHHH
Q 008596 333 VLAKKFLSREIQQ-S--------GFG-------HDSTEDARAAMELALL 365 (560)
Q Consensus 333 ~La~~~Lg~~IQ~-~--------~~~-------HdSlEDA~Atl~L~~~ 365 (560)
.+|+++||..-.. . ..+ +-++.||..++.|+..
T Consensus 277 ~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~ 325 (775)
T 1qht_A 277 AVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGRE 325 (775)
T ss_dssp HHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999985321 0 011 1236788888888753
No 31
>2i09_A Phosphopentomutase; structural genomics, target T1865, NYSGXRC, PSI, protein structure initiative; 2.00A {Streptococcus mutans} PDB: 3m7v_A
Probab=96.12 E-value=0.022 Score=60.60 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=81.1
Q ss_pred hHHHHHHHHHcCCeeeeecccccccccCCCCccee-cCCChHHHHHHHHHhccC-CCc-cEEEEecccchhhhhhhhhhH
Q 008596 372 RTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAI-PVSSDDEVLSKARKEVKN-DRI-HFVWTQFSELNLHFKKQAKDE 448 (560)
Q Consensus 372 ~~~i~~~l~~~g~~~~~id~~~~~~~~~~~~~~~i-~c~~D~ev~~~~~~~v~~-~~~-~f~~~~~~~l~~~~~~~~~~~ 448 (560)
...++++|.+.|.....|........ +++-+.++ +..+++++++++++.++. ... ||+++.|.+......+
T Consensus 230 ~pTvld~L~~aG~~V~~VGKi~Dif~-g~GiT~~~~~~~~~~e~~d~~i~~l~~~~~~~dfi~vn~~~~Dm~~GH----- 303 (403)
T 2i09_A 230 APTVLNKLADAGVSTYAVGKINDIFN-GSGITNDMGHNKSNSHGVDTLIKTMGLSAFTKGFSFTNLVDFDALYGH----- 303 (403)
T ss_dssp SCCHHHHHHHTTCEEEEETTHHHHTT-TTTCSEECCCCSSHHHHHHHHHHHHHCSSCCSEEEEEEECHHHHHTTT-----
T ss_pred CCCHHHHHHHCCCeEEEEcchHHeec-CCCccccccCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcccCc-----
Confidence 35889999999999988865322111 23345556 778899999999999987 555 8999998654310111
Q ss_pred HHHHHHHHHHhhhhccccccccccccCCCCChHHHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC
Q 008596 449 AKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGD 514 (560)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iy~~lP~~t~liv~sg~gd 514 (560)
+ ...+...++++.+|++|.+|.++|.++|++||.+=||+
T Consensus 304 -----------------~----------~d~~~y~~aIe~vD~~LG~Il~aL~~~tllIITADHGn 342 (403)
T 2i09_A 304 -----------------R----------RNAHGYRDCLHEFDERLPEIIAAMKVDDLLLITADHGN 342 (403)
T ss_dssp -----------------T----------TCHHHHHHHHHHHHHHHHHHHHTCCTTEEEEEECSSBC
T ss_pred -----------------C----------CCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEecCCCC
Confidence 0 01124567799999999999999999999999999998
No 32
>3ot9_A Phosphopentomutase; alkaline phosphatase like core domain, R phosphate, ribose-1-phosphate, glucose-1,6-bisphosphate, PH transfer, isomerase; HET: TPO G16; 1.75A {Bacillus cereus} PDB: 3m8y_A* 3m8w_A* 3m8z_A* 3twz_A* 3tx0_A 3uo0_A* 3un2_A 3un3_A* 3un5_A 3uny_A
Probab=96.01 E-value=0.022 Score=60.54 Aligned_cols=110 Identities=16% Similarity=0.252 Sum_probs=82.3
Q ss_pred hHHHHHHHHHcCCeeeeecccccccccCCCCcceecCCChHHHHHHHHHhccCCCccEEEEecccchhhhhhhhhhHHHH
Q 008596 372 RTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKL 451 (560)
Q Consensus 372 ~~~i~~~l~~~g~~~~~id~~~~~~~~~~~~~~~i~c~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~ 451 (560)
...++++|.+.|.....|........ +.+-+..++..++.++++++++.++....+|+++.+.+......+.
T Consensus 226 ~pTvld~L~~aG~~v~~VGKi~Dif~-g~Git~~~~~~~~~~~~d~~i~~L~~~~~dfv~vn~~~~D~~~GH~------- 297 (399)
T 3ot9_A 226 GRTVMNELKDSDYDVIAIGKISDIYD-GEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHR------- 297 (399)
T ss_dssp SCCHHHHHHHTTCEEEEETTHHHHTT-TTTCSEEECCSSHHHHHHHHHHHHTSCCSEEEEEEECHHHHHTTTT-------
T ss_pred CCCHHHHHHHcCCeEEEeccHHheec-CCCccceeccCChHHHHHHHHHHHHhCCCCEEEEEecCCccccccc-------
Confidence 35889999999999998864321111 2344567888999999999999998776799999986653211110
Q ss_pred HHHHHHHhhhhccccccccccccCCCCChHHHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC
Q 008596 452 NEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGD 514 (560)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iy~~lP~~t~liv~sg~gd 514 (560)
.......++++.+|++|.+|.++|..+.++||.|=||+
T Consensus 298 -------------------------~~~~~Y~~aIe~vD~~IGrIL~~L~e~~lVIiTSDHG~ 335 (399)
T 3ot9_A 298 -------------------------RDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGN 335 (399)
T ss_dssp -------------------------TCHHHHHHHHHHHHTTHHHHHHHCCTTEEEEEECSSBC
T ss_pred -------------------------CCHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEcCCCC
Confidence 01124567799999999999999999999999999997
No 33
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=94.94 E-value=0.13 Score=59.45 Aligned_cols=147 Identities=14% Similarity=0.197 Sum_probs=86.7
Q ss_pred CCcEEEEEecc-ccCCC--------CceEEEEEEEEecCcEEEEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHH
Q 008596 211 PYEILALDCEM-CYTNE--------GLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQE 281 (560)
Q Consensus 211 ~~~~valDcEm-~~t~~--------g~eL~rVsvVd~~G~vvlD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~ 281 (560)
+.+++++|+|+ ++... .+.|+.|++++.+|..-+ .+++|... ..-.+.+.| ..+... .+-.++..
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~-~~~~~~~~-~~~~~~i~~---~~v~~~-~~E~~LL~ 262 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKV-LVLNRNDV-NEGSVKLDG---ISVERF-NTEYELLG 262 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEE-EEECSSCC-CCCCEEETT---EEEEEE-SSHHHHHH
T ss_pred CceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEE-EEEeCCcc-cccccCCCC---CeEEEe-CCHHHHHH
Confidence 46799999999 64311 157999999976664211 24454321 100122222 123333 36778888
Q ss_pred HHHHhhcCCCEEEEeCc-hhhHHHHccc---c-------Cc--------------ccccccccccc-------cCCCCCc
Q 008596 282 EFLKLVYKETILVGHSL-ENDLLALKIS---H-------GL--------------VIDTAVLYKHP-------QGGSHKT 329 (560)
Q Consensus 282 ~L~~~i~~~~ILVGHsL-~~DL~aLki~---H-------p~--------------viDT~~Ly~~~-------~g~~~k~ 329 (560)
.+.+++..-.+|||||. .|||.+|.-. | |. .+|....+... .+....+
T Consensus 263 ~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~sy 342 (847)
T 1s5j_A 263 RFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEY 342 (847)
T ss_dssp HHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSC
T ss_pred HHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccccccccc
Confidence 89988876679999997 6899988621 1 11 12433322220 1222467
Q ss_pred cHHHHHHHhcCccccc-C-C---C-----CCChHHHHHHHHHHH
Q 008596 330 SLRVLAKKFLSREIQQ-S-G---F-----GHDSTEDARAAMELA 363 (560)
Q Consensus 330 sLk~La~~~Lg~~IQ~-~-~---~-----~HdSlEDA~Atl~L~ 363 (560)
+|..+|+.+||..-.. . . . .+-++.||..+++|+
T Consensus 343 sL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 343 NLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp SHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999975221 0 0 0 112467999999885
No 34
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=93.86 E-value=0.49 Score=54.32 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=75.7
Q ss_pred CCCCcEEEEEeccccCCCCceEEEEEEEEecCcEEEEEEEe-CC--CCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHH
Q 008596 209 SSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVK-PS--NAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLK 285 (560)
Q Consensus 209 ~~~~~~valDcEm~~t~~g~eL~rVsvVd~~G~vvlD~LVk-P~--~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~ 285 (560)
.++.++++||+|+.. .| ++..|++-+..-..|+ .+. |+ .++.+....+ . .+=.++...+.+
T Consensus 150 ~p~lrilsfDIE~~~--~g-~i~~I~~~~~~~~~v~--~l~~~~~~~~~~~~~V~~----------f-~~E~~lL~~f~~ 213 (786)
T 3k59_A 150 RPPLKWVSIDIETTR--HG-ELYCIGLEGCGQRIVY--MLGPENGDASSLDFELEY----------V-ASRPQLLEKLNA 213 (786)
T ss_dssp CCCCCEEEEEEEECT--TS-CEEEEEEEETTEEEEE--EESSCCSCCTTCSSEEEE----------E-SSHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEcC--CC-CEEEEEecCCCCCeEE--EEecCCCCCCCCCceEEE----------e-CCHHHHHHHHHH
Confidence 456789999999983 44 6777876543212221 122 22 1333332211 1 123344555555
Q ss_pred hhc--CCCEEEEeCc-hhhHHHHccc---cC------------------------------c-ccccccccccccCCCCC
Q 008596 286 LVY--KETILVGHSL-ENDLLALKIS---HG------------------------------L-VIDTAVLYKHPQGGSHK 328 (560)
Q Consensus 286 ~i~--~~~ILVGHsL-~~DL~aLki~---Hp------------------------------~-viDT~~Ly~~~~g~~~k 328 (560)
++. .-.||||||. .|||..|.-. |. + ++|...+.+........
T Consensus 214 ~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~S 293 (786)
T 3k59_A 214 WFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSS 293 (786)
T ss_dssp HHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSC
T ss_pred HHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCC
Confidence 553 2349999997 5799988510 00 0 23332222211112356
Q ss_pred ccHHHHHHHhcCcccccCCCCCC----------------------hHHHHHHHHHHHHH
Q 008596 329 TSLRVLAKKFLSREIQQSGFGHD----------------------STEDARAAMELALL 365 (560)
Q Consensus 329 ~sLk~La~~~Lg~~IQ~~~~~Hd----------------------SlEDA~Atl~L~~~ 365 (560)
++|..+|+++||..-. .|+ ++.||..+++|+.+
T Consensus 294 ysL~~Va~~~Lg~~K~----~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~k 348 (786)
T 3k59_A 294 FSLETVAQELLGEGKS----IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHK 348 (786)
T ss_dssp CSHHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCc----ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999987521 233 25789989888754
No 35
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.091 Score=61.32 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=82.1
Q ss_pred CCCcEEEEEeccccCC---C---CceEEEEEEE-EecCcE--EEEE-E-EeCCCCCCCCcEEecCCChhhhcCCCCCHHH
Q 008596 210 SPYEILALDCEMCYTN---E---GLELTRVTLV-DIKGQV--LLDK-L-VKPSNAIVDYNTRYSGITHEMLSGVTTSLKD 278 (560)
Q Consensus 210 ~~~~~valDcEm~~t~---~---g~eL~rVsvV-d~~G~v--vlD~-L-VkP~~~I~dy~T~~SGIT~e~L~~~~~tl~d 278 (560)
+|.++++||+|+.... + .++|+.||.+ ...|.. .... + +.+..++ ....+... .+=.+
T Consensus 247 PplrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~~----------~~~~V~~~-~sE~e 315 (919)
T 3iay_A 247 APLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPI----------TGSMIFSH-ATEEE 315 (919)
T ss_dssp CCCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCCB----------TTBEEEEE-SSHHH
T ss_pred CCceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCCC----------CCCeEEEC-CCHHH
Confidence 4668999999998532 1 2689999865 445531 1111 1 1222221 11223333 35567
Q ss_pred HHHHHHHhhc--CCCEEEEeCc-hhhHHHHcc-------ccC----c--------------------------------c
Q 008596 279 IQEEFLKLVY--KETILVGHSL-ENDLLALKI-------SHG----L--------------------------------V 312 (560)
Q Consensus 279 Vq~~L~~~i~--~~~ILVGHsL-~~DL~aLki-------~Hp----~--------------------------------v 312 (560)
+...+.+++. .-.||||||. .|||..|.- .+. + +
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 7777777773 3479999998 689988851 110 0 1
Q ss_pred cccccccccccCCCCCccHHHHHHHhcCccccc-CC--------CC--------CChHHHHHHHHHHHHHH
Q 008596 313 IDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQ-SG--------FG--------HDSTEDARAAMELALLK 366 (560)
Q Consensus 313 iDT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~-~~--------~~--------HdSlEDA~Atl~L~~~k 366 (560)
+|+..+++.. .....++|..+|+++||..-.. .. ++ +-++.||..+++|+.+.
T Consensus 396 lDl~~~~k~~-~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQRE-YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHH-CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhh-cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333222 2345688999999999975431 00 00 11367999999987543
No 36
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=93.57 E-value=0.31 Score=56.80 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=93.8
Q ss_pred CcEEEEEeccccCCC-------CceEEEEEEEEecCc--EEEEEEEeCCCCCCCCcEE---------ecCCChhhhcCCC
Q 008596 212 YEILALDCEMCYTNE-------GLELTRVTLVDIKGQ--VLLDKLVKPSNAIVDYNTR---------YSGITHEMLSGVT 273 (560)
Q Consensus 212 ~~~valDcEm~~t~~-------g~eL~rVsvVd~~G~--vvlD~LVkP~~~I~dy~T~---------~SGIT~e~L~~~~ 273 (560)
-++++||+|+..-+. ..+|+-||+.|..|. +++|-|-.|......|.+. ...+..+.+.++.
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 187 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKII 187 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCeE
Confidence 469999999965211 258999999997554 4455555555544455432 2334555555431
Q ss_pred ----CCHHHHHHHHHHhhc--CCCEEEEeCc-hhhHHHHcc--c--c--------------------------------C
Q 008596 274 ----TSLKDIQEEFLKLVY--KETILVGHSL-ENDLLALKI--S--H--------------------------------G 310 (560)
Q Consensus 274 ----~tl~dVq~~L~~~i~--~~~ILVGHsL-~~DL~aLki--~--H--------------------------------p 310 (560)
.+=.++..++.+++. .-.||+|||. .|||..|.- . | .
T Consensus 188 v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~G 267 (903)
T 3qex_A 188 YMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFG 267 (903)
T ss_dssp EEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETT
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeC
Confidence 245567777777774 4479999997 679977641 0 0 0
Q ss_pred c-ccccccccccc-cCCCCCccHHHHHHHhcCcccccC-C------------CCCChHHHHHHHHHHHHH
Q 008596 311 L-VIDTAVLYKHP-QGGSHKTSLRVLAKKFLSREIQQS-G------------FGHDSTEDARAAMELALL 365 (560)
Q Consensus 311 ~-viDT~~Ly~~~-~g~~~k~sLk~La~~~Lg~~IQ~~-~------------~~HdSlEDA~Atl~L~~~ 365 (560)
+ ++|+..+++.. ......++|..+|+++||.....- . -.+-++.||..+++|+.+
T Consensus 268 Rv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 268 ISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp CEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 34554444431 112346789999999999864320 0 001125799999999854
No 37
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=92.32 E-value=1.4 Score=44.59 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=85.5
Q ss_pred cEEEEEeccccCCCC----------------------ceEEEEEE--EEecCcE-----E--EEEEEeCCCCCC-----C
Q 008596 213 EILALDCEMCYTNEG----------------------LELTRVTL--VDIKGQV-----L--LDKLVKPSNAIV-----D 256 (560)
Q Consensus 213 ~~valDcEm~~t~~g----------------------~eL~rVsv--Vd~~G~v-----v--lD~LVkP~~~I~-----d 256 (560)
.+||||+|++|+... ..|+++++ .+.+|+. . |.-...|...+- +
T Consensus 35 ~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~SI~ 114 (285)
T 4gmj_B 35 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIE 114 (285)
T ss_dssp CEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHHH
T ss_pred CEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccccccHHHHH
Confidence 499999999997321 02555554 4555542 1 333344433221 1
Q ss_pred CcEEecCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEeCchhhHHHHcc--------------------ccCccc
Q 008596 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLK---LVYKETILVGHSLENDLLALKI--------------------SHGLVI 313 (560)
Q Consensus 257 y~T~~SGIT~e~L~~~~~tl~dVq~~L~~---~i~~~~ILVGHsL~~DL~aLki--------------------~Hp~vi 313 (560)
++ +=+||.=..+.....+..+..+.+.. .+.++...|.|+--.|+..|-- .-|.+.
T Consensus 115 fL-~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vY 193 (285)
T 4gmj_B 115 LL-TTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 193 (285)
T ss_dssp HH-HHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HH-HHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhh
Confidence 11 12566655544322334333333322 2334555555555589976641 136788
Q ss_pred ccccccccccCCCCCccHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHH
Q 008596 314 DTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLK 366 (560)
Q Consensus 314 DT~~Ly~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~~k 366 (560)
||-.|.+... ..+.+|..||+. ||++= -+..|.|-.||..|+..|.+.
T Consensus 194 D~K~l~~~~~--~l~ggL~~lA~~-L~v~r--~g~~HqAGsDSllT~~~F~kl 241 (285)
T 4gmj_B 194 DVKYLMKSCK--NLKGGLQEVAEQ-LELER--IGPQHQAGSDSLLTGMAFFKM 241 (285)
T ss_dssp EHHHHGGGST--TCCSCHHHHHHH-TTCCC--CSCTTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcc--ccCChHHHHHHh-CCCCC--CCCCCcchhHHHHHHHHHHHH
Confidence 9888776653 246789999986 67652 235799999999999998543
No 38
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=91.68 E-value=0.48 Score=50.63 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=65.0
Q ss_pred hhhcCCCCCHHHHHHHHHHhhcCCCEEEEeCchhhHHHHcc-------------------ccCccccccccccccc-C-C
Q 008596 267 EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKI-------------------SHGLVIDTAVLYKHPQ-G-G 325 (560)
Q Consensus 267 e~L~~~~~tl~dVq~~L~~~i~~~~ILVGHsL~~DL~aLki-------------------~Hp~viDT~~Ly~~~~-g-~ 325 (560)
+.+..+ ..|..|.+.|.+ .+.+|||||.-.||-.|-- .-|.|+||-.|+.+.. + .
T Consensus 262 ~~l~~~-~Gfr~V~~~L~~---s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~ 337 (430)
T 2a1r_A 262 EELNDA-VGFSRVIHAIAN---SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDI 337 (430)
T ss_dssp HHHHTT-SBTHHHHHHHHH---HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTT
T ss_pred HHHHhh-hhHHHHHHHHHh---CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhc
Confidence 345555 567777666655 6899999999999986651 1378999988765531 1 1
Q ss_pred CCCccHHHHHHHhcCcc-----ccc----------CCCCCChHHHHHHHHHHHHHHHH
Q 008596 326 SHKTSLRVLAKKFLSRE-----IQQ----------SGFGHDSTEDARAAMELALLKIR 368 (560)
Q Consensus 326 ~~k~sLk~La~~~Lg~~-----IQ~----------~~~~HdSlEDA~Atl~L~~~kl~ 368 (560)
....+|..|...+-... |+. .+..|.|--||.+|..++.....
T Consensus 338 ~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~ 395 (430)
T 2a1r_A 338 INNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 395 (430)
T ss_dssp CSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHH
Confidence 23467999987542221 211 12459999999999999854443
No 39
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.56 E-value=0.28 Score=53.49 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHhhcCCCEEEEeCchhhHHHHcc-------------------ccCcccccccccccc--cCCCCCccHH
Q 008596 274 TSLKDIQEEFLKLVYKETILVGHSLENDLLALKI-------------------SHGLVIDTAVLYKHP--QGGSHKTSLR 332 (560)
Q Consensus 274 ~tl~dVq~~L~~~i~~~~ILVGHsL~~DL~aLki-------------------~Hp~viDT~~Ly~~~--~g~~~k~sLk 332 (560)
..|..|.+.|. ..+.+|||||.-.||..|-- .-|.|+||-.|..+. .......+|.
T Consensus 263 ~Gfr~v~~~L~---~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~ 339 (507)
T 3d45_A 263 VGFSRVIHAIA---NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLA 339 (507)
T ss_dssp SBTHHHHHHHH---HHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHH
T ss_pred hhHHHHHHHHH---hCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHH
Confidence 35655655555 47899999999999988762 137899998877652 1112246899
Q ss_pred HHHHHhcCc------cccc----------CCCCCChHHHHHHHHHHHHHHHHh
Q 008596 333 VLAKKFLSR------EIQQ----------SGFGHDSTEDARAAMELALLKIRN 369 (560)
Q Consensus 333 ~La~~~Lg~------~IQ~----------~~~~HdSlEDA~Atl~L~~~kl~~ 369 (560)
.|++. |+. .|+. .+..|.|--||.+|..+|.+....
T Consensus 340 ~l~~~-l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~ 391 (507)
T 3d45_A 340 ELEKR-LKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 391 (507)
T ss_dssp HHHHH-TTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99986 542 1211 124699999999999998554433
No 40
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=88.21 E-value=3.8 Score=49.18 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=49.4
Q ss_pred CCCcEEEEEeccccCC-----------CCceEEEEEEE-EecCc-EEEEEEEeCCC---CCCCCcE-----EecCCChhh
Q 008596 210 SPYEILALDCEMCYTN-----------EGLELTRVTLV-DIKGQ-VLLDKLVKPSN---AIVDYNT-----RYSGITHEM 268 (560)
Q Consensus 210 ~~~~~valDcEm~~t~-----------~g~eL~rVsvV-d~~G~-vvlD~LVkP~~---~I~dy~T-----~~SGIT~e~ 268 (560)
++.+++++|+|+.... ..++|+.||.+ ...|. .....+|-+.. .+.++.. .+.|+ .
T Consensus 318 P~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~---~ 394 (1193)
T 2gv9_A 318 PAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTP---V 394 (1193)
T ss_dssp CCCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCC---E
T ss_pred CCceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCc---e
Confidence 4568999999997541 13689999965 32221 11222222111 1111110 01121 1
Q ss_pred hcCCCCCHHHHHHHHHHhhcC--CCEEEEeCc-hhhHHHHc
Q 008596 269 LSGVTTSLKDIQEEFLKLVYK--ETILVGHSL-ENDLLALK 306 (560)
Q Consensus 269 L~~~~~tl~dVq~~L~~~i~~--~~ILVGHsL-~~DL~aLk 306 (560)
+... .+=.++...+.++|.. -.||||||+ .|||.+|.
T Consensus 395 V~~~-~sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~ 434 (1193)
T 2gv9_A 395 VLEF-DSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLL 434 (1193)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHH
T ss_pred EEec-CCHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHH
Confidence 2222 2445566666666632 359999997 67998775
No 41
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=75.86 E-value=8.1 Score=42.21 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=54.8
Q ss_pred CChHHHHHHHHHhccCCCccEEEEecccchhhhhhhhhhHHHHHHHHHHHhhhhccccccccccccCCCCChHHHHHHHH
Q 008596 409 SSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILAR 488 (560)
Q Consensus 409 ~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (560)
.+++++.+++++.+.....+|++..|..... .. +. ........+++.
T Consensus 374 ms~~ev~d~ai~~L~~~kpdfi~lnf~~pD~-~G----------------------H~----------~~~~~y~~aIe~ 420 (511)
T 1o98_A 374 MSAYEVTDALLKEIEADKYDAIILNYANPDM-VG----------------------HS----------GKLEPTIKAVEA 420 (511)
T ss_dssp TTHHHHHHHHHHHHHTTCCSEEEEEECHHHH-HH----------------------TT----------TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCCcEEEEeCCCCcc-cc----------------------cc----------cCHHHHHHHHHH
Confidence 5678999999998877667999987754321 00 00 011245677999
Q ss_pred HHHHHHHHHhhCCC-CcEEEEEeCCCCh
Q 008596 489 TDARVNSLYTALPT-NTMLIICTGHGDT 515 (560)
Q Consensus 489 ~~~~i~~iy~~lP~-~t~liv~sg~gd~ 515 (560)
+|+.|.+|+++|.. +|++||.|=||.+
T Consensus 421 vD~~lGrll~~Lk~~gTlIIiTSDHG~~ 448 (511)
T 1o98_A 421 VDECLGKVVDAILAKGGIAIITADHGNA 448 (511)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSBST
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 99999999999975 7999999999975
No 42
>3q3q_A Alkaline phosphatase; hydrolase; 1.95A {Sphingomonas SP}
Probab=72.89 E-value=4.9 Score=44.38 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhccCC------CccEEEEecccchhhhhhhhhhHHHHHHHHHHHhhhhccccccccccccCCCCChHHHH
Q 008596 411 DDEVLSKARKEVKND------RIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKE 484 (560)
Q Consensus 411 D~ev~~~~~~~v~~~------~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (560)
|+.+.+.|+..+... ..||+++.|.++. +..+ . . ...+++..+
T Consensus 267 D~~v~~~A~~~l~~~~l~~~~~pdll~vy~~~~D-~~gH-----~-~------------------------Gp~S~e~~~ 315 (565)
T 3q3q_A 267 DAMTLAFAAAAIENMQLGKQAQTDIISIGLSATD-YVGH-----T-F------------------------GTEGTESCI 315 (565)
T ss_dssp HHHHHHHHHHHHHHTTTTSSSSCEEEEEEECHHH-HHHH-----H-H------------------------CSSSHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCCCEEEEEcCCCc-cccc-----c-C------------------------CCCCHHHHH
Confidence 777887776655443 4699999998764 2111 0 0 022356889
Q ss_pred HHHHHHHHHHHHHhhCC---CCcEEEEEeCCCCh
Q 008596 485 ILARTDARVNSLYTALP---TNTMLIICTGHGDT 515 (560)
Q Consensus 485 ~~~~~~~~i~~iy~~lP---~~t~liv~sg~gd~ 515 (560)
++.++|+.|.+|++.|. .++++||.|-||=.
T Consensus 316 ~l~~lD~~lg~Ll~~l~~~~~~t~vivtSDHG~~ 349 (565)
T 3q3q_A 316 QVDRLDTELGAFFDKLDKDGIDYVVVLTADHGGH 349 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEECSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEcCCCCC
Confidence 99999999999999884 69999999998854
No 43
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=72.39 E-value=6.1 Score=43.58 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=41.2
Q ss_pred CCcEEEEEeccccCCCCceEEEEEEEEecCcEEEEEEEeCCCCCCCCcEEecCCChhhhcCCCCCHHHHHHHHHHhhcCC
Q 008596 211 PYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKE 290 (560)
Q Consensus 211 ~~~~valDcEm~~t~~g~eL~rVsvVd~~G~vvlD~LVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~L~~~i~~~ 290 (560)
+++++++|+||..-.....+..+++.+..+. .. |.|. ..+.+..+.+. ..+
T Consensus 5 ~~~i~~~D~Et~~d~~~~~~~~i~~~~~~~~-------------~~----~~~~---------~~l~~fi~~~~---~~~ 55 (575)
T 2py5_A 5 PRKMYSCAFETTTKVEDCRVWAYGYMNIEDH-------------SE----YKIG---------NSLDEFMAWVL---KVQ 55 (575)
T ss_dssp CCCEEEEEEEECCBTTBCCEEEEEEEESSCT-------------TC----EEEE---------SCHHHHHHHHH---HHC
T ss_pred cceEEEEEEEeecCCCCCceEEEEEEeCCce-------------EE----EEec---------hhHHHHHHHHH---HcC
Confidence 4579999999965443346777777653211 11 1110 12455554443 346
Q ss_pred CEEEEeCchhhHHHHc
Q 008596 291 TILVGHSLENDLLALK 306 (560)
Q Consensus 291 ~ILVGHsL~~DL~aLk 306 (560)
.++++||+.||+.+|-
T Consensus 56 ~~i~~hNl~FD~~~l~ 71 (575)
T 2py5_A 56 ADLYFHNLKFAGAFII 71 (575)
T ss_dssp CEEEETTHHHHHHHHH
T ss_pred CEEEEEChhhhHHHHH
Confidence 7799999999998886
No 44
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A
Probab=67.49 E-value=6.9 Score=43.20 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=58.0
Q ss_pred cCCChHHHHHHHHHhccCCCccEEEEecccchhhhhhhhhhHHHHHHHHHHHhhhhccccccccccccCCCCChHHHHHH
Q 008596 407 PVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEIL 486 (560)
Q Consensus 407 ~c~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (560)
+--|-.|+.+++++.+.....||+++.|-.... + + +. ...+...+++
T Consensus 394 Pemsa~ev~d~~i~al~~~~~DfI~vn~an~Dm-----------v-G-----------Ht----------Gd~~a~~kAI 440 (561)
T 3igz_B 394 PRMQSAAITEAAIEALKSGMYNVVRINFPNGDM-----------V-G-----------HT----------GDLKATITGV 440 (561)
T ss_dssp TTTTHHHHHHHHHHHHHHSCCSEEEEEECHHHH-----------H-H-----------TT----------TCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEecCChhh-----------h-h-----------cC----------CCHHHHHHHH
Confidence 556788999999999977668999988843210 0 0 00 0122456789
Q ss_pred HHHHHHHHHHHhhCCC-CcEEEEEeCCCChHH
Q 008596 487 ARTDARVNSLYTALPT-NTMLIICTGHGDTAI 517 (560)
Q Consensus 487 ~~~~~~i~~iy~~lP~-~t~liv~sg~gd~~~ 517 (560)
+.+|+.|.+|+++|-. +|++||.|=||++..
T Consensus 441 E~vD~~LGrIl~aL~e~GtiIIITADHGn~e~ 472 (561)
T 3igz_B 441 EAVDESLAKLKDAVDSVNGVYIVTADHGNSDD 472 (561)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSSBSTTC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCCCchh
Confidence 9999999999999965 799999999999753
No 45
>3m7v_A Phosphopentomutase; structural genomics, nysgrc, cytoplasm, isomerase, manganese binding, PSI-2, protein structure initiative; 2.00A {Streptococcus mutans}
Probab=65.69 E-value=5 Score=40.00 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCh
Q 008596 482 IKEILARTDARVNSLYTALPTNTMLIICTGHGDT 515 (560)
Q Consensus 482 ~~~~~~~~~~~i~~iy~~lP~~t~liv~sg~gd~ 515 (560)
..+.++.+|+.|.+|.++|..||++|+.|=||+.
T Consensus 312 y~~~i~~~D~~vg~~l~~L~entliiftsDnG~~ 345 (413)
T 3m7v_A 312 YRDCLHEFDERLPEIIAAMKVDDLLLITADHGND 345 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTEEEEEECSSBCC
T ss_pred HHHHHHHHHhHHHHHHHhcCCCCEEEEEccCCCC
Confidence 4567999999999999999999999999999964
No 46
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP, hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A 2gsu_A* 2rh6_A*
Probab=64.56 E-value=10 Score=38.72 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHhccC---CCccEEEEecccchhhhhhhhhhHHHHHHHHHHHhhhhccccccccccccCCCCChHHHHHH
Q 008596 410 SDDEVLSKARKEVKN---DRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEIL 486 (560)
Q Consensus 410 ~D~ev~~~~~~~v~~---~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (560)
++++.++++++.+.. ...+|++..|..... .. + .. .....+...++
T Consensus 140 ~~~~~~~~a~~~l~~~~~~~P~fl~~~~~~~d~--~~----h-~~------------------------g~~~~~y~~~i 188 (393)
T 2gso_A 140 RLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDE--AG----H-DH------------------------GPESRQYADAV 188 (393)
T ss_dssp CHHHHHHHHHHHHHCCGGGCEEEEEEEECHHHH--HH----H-HH------------------------CTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCCeEEEEecCCCCc--cc----c-cc------------------------CCCcHHHHHHH
Confidence 456677777776642 345898887765421 00 0 00 01123567889
Q ss_pred HHHHHHHHHHHhhCC-----CCcEEEEEeCCCCh
Q 008596 487 ARTDARVNSLYTALP-----TNTMLIICTGHGDT 515 (560)
Q Consensus 487 ~~~~~~i~~iy~~lP-----~~t~liv~sg~gd~ 515 (560)
..+|+.|.+|.++|. .||++|+.|=||-.
T Consensus 189 ~~~D~~ig~ll~~L~~~g~~~nT~vi~tSDHG~~ 222 (393)
T 2gso_A 189 RAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMA 222 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGEEEEEECSCCCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Confidence 999999999999988 78999999999974
No 47
>1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A {Pseudomonas fluorescens} SCOP: c.76.1.4
Probab=63.32 E-value=18 Score=37.24 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHhccCCCccEEEEecccchhhhhhhhhhHHHHHHHHHHHhhhhccccccccccccCCCCChHHHHHHHHH
Q 008596 410 SDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILART 489 (560)
Q Consensus 410 ~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (560)
.|+.+.+.++..++....+|++ |.++. +..+ . ....+++..++++.+
T Consensus 175 ~~~~~~~~a~~~i~~~~p~fly--~~~~D-~~gH----------~--------------------~g~~s~~~~~~l~~l 221 (406)
T 1ei6_A 175 LSEFVFAAGLSLLTNERPDFMY--LSTTD-YVQH----------K--------------------HAPGTPEANAFYAMM 221 (406)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEE--EECCC-HHHH----------H--------------------SCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEE--eCCcc-hhhc----------c--------------------CCCCcHHHHHHHHHH
Confidence 4677788888777766678853 54442 1110 0 001234678899999
Q ss_pred HHHHHHHHhhCCCCcEEEEEeCCCCh
Q 008596 490 DARVNSLYTALPTNTMLIICTGHGDT 515 (560)
Q Consensus 490 ~~~i~~iy~~lP~~t~liv~sg~gd~ 515 (560)
|+.|.+|.++ +|++||.|=||-.
T Consensus 222 D~~lg~ll~~---~t~vivtSDHG~~ 244 (406)
T 1ei6_A 222 DSYFKRYHEQ---GAIVAITADHGMN 244 (406)
T ss_dssp HHHHHHHHHT---TCEEEEECSCCCE
T ss_pred HHHHHHHHhC---CCEEEEEeCCCCc
Confidence 9999999999 9999999988863
No 48
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2; lysophospholipase D, autotaxin, ENPP2, lysophosphatidic acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A* 2xrg_A* 2xr9_A*
Probab=62.66 E-value=18 Score=41.57 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCeeeeecccccccccCCCCcceecCCChHHHHHHHHHhcc---CCCccEEEEecccchhhhhhhhhhHHH
Q 008596 374 KLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVK---NDRIHFVWTQFSELNLHFKKQAKDEAK 450 (560)
Q Consensus 374 ~i~~~l~~~g~~~~~id~~~~~~~~~~~~~~~i~c~~D~ev~~~~~~~v~---~~~~~f~~~~~~~l~~~~~~~~~~~~~ 450 (560)
.+...+.+.|.+++.+.|. + -..-++.+..+++.+. ....+|+++.|.++... .. .
T Consensus 223 piw~~~~~~G~~ta~~~wp------g--------~~~~~~~v~~~~~~l~~~~~~~P~f~~ly~~~~D~~-gH------~ 281 (831)
T 3nkq_A 223 PLWITATKQGVRAGTFFWS------V--------SIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFS-GH------K 281 (831)
T ss_dssp CHHHHHHHTTCCBCCSCCC------T--------TSCHHHHHHHHHHHHTSCTTTCCSEEEEEEEEEHHH-HH------H
T ss_pred cHHHHHHHcCCceEEEeCC------C--------CCCHHHHHHHHHHHHhcccccCCceEEEecCCcchh-cc------c
Confidence 3444556778777766442 1 1123556666666553 34568999888776421 10 0
Q ss_pred HHHHHHHHhhhhccccccccccccCCCCChHHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEeCCC
Q 008596 451 LNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALP-----TNTMLIICTGHG 513 (560)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iy~~lP-----~~t~liv~sg~g 513 (560)
. .....+..++++.+|..|.+|.++|. .||++||.|=||
T Consensus 282 ~------------------------Gp~s~ey~~al~~vD~~IG~Ll~~Lk~~GL~dnT~VI~TSDHG 325 (831)
T 3nkq_A 282 Y------------------------GPFGPEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHG 325 (831)
T ss_dssp H------------------------CTTCGGGHHHHHHHHHHHHHHHHHHHHTTCTTTCEEEEEESCC
T ss_pred c------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEcCCC
Confidence 0 01223567889999999999999875 579999999999
No 49
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase; phosphonopyruvate decarboxylase, isomerase, structural genom NPPSFA; 2.40A {Pyrococcus horikoshii}
Probab=60.95 E-value=15 Score=38.75 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHhccCCCccEEEEecccchhhhhhhhhhHHHHHHHHHHHhhhhccccccccccccCCCCChHHHHHHHH
Q 008596 409 SSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILAR 488 (560)
Q Consensus 409 ~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (560)
.+.++.++.+++.+. ..||+++.|..... ..+. ...+...++++.
T Consensus 278 ~~~~~~~~~~~~~l~--~~d~v~v~~~~~D~-~GH~--------------------------------~d~~~~~~aie~ 322 (412)
T 2zkt_A 278 TNEMAKAKKAVELLK--DYDFVFLHFKPTDA-AGHD--------------------------------NKPKLKAELIER 322 (412)
T ss_dssp CCHHHHHHHHHHHHH--HCSEEEEEECHHHH-HHHT--------------------------------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc--CCCEEEEcCccCCh-HHHc--------------------------------CCHHHHHHHHHH
Confidence 466667777777775 35899988855431 1100 012245678999
Q ss_pred HHHHHHHHHhhCCC-CcEEEEEeCCCCh
Q 008596 489 TDARVNSLYTALPT-NTMLIICTGHGDT 515 (560)
Q Consensus 489 ~~~~i~~iy~~lP~-~t~liv~sg~gd~ 515 (560)
+|++|.+|+++|.. ++.+||.+-||+|
T Consensus 323 ~D~~lg~ll~al~~~~~~liitaDHG~p 350 (412)
T 2zkt_A 323 ADRMIGYILDHVDLEEVVIAITGDHSTP 350 (412)
T ss_dssp HHHHHHHHHTTSCTTTEEEEEECSSBCC
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 99999999999987 7899999999997
No 50
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB, sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio parahaemolyticus}
Probab=53.47 E-value=59 Score=33.66 Aligned_cols=34 Identities=12% Similarity=0.312 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEeCCCC
Q 008596 481 EIKEILARTDARVNSLYTALP-----TNTMLIICTGHGD 514 (560)
Q Consensus 481 ~~~~~~~~~~~~i~~iy~~lP-----~~t~liv~sg~gd 514 (560)
....++..+|..|.+|.+.|- .||++|++|=||.
T Consensus 270 ~y~~~v~~~D~~ig~~l~~L~~~g~~~nTlvI~tsDHG~ 308 (450)
T 3lxq_A 270 TRNNAVKYSDYALGTFFDKAKKSSYWDDTIFIVIADHDA 308 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSSGGGEEEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCCeEEEEECCCCc
Confidence 456789999999999999984 6999999999995
No 51
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=44.47 E-value=70 Score=31.62 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=63.8
Q ss_pred cCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEeCchhhHHHHc-c-------------------ccCcccccccc
Q 008596 262 SGITHEMLSGVTTSLKDIQEEFLK---LVYKETILVGHSLENDLLALK-I-------------------SHGLVIDTAVL 318 (560)
Q Consensus 262 SGIT~e~L~~~~~tl~dVq~~L~~---~i~~~~ILVGHsL~~DL~aLk-i-------------------~Hp~viDT~~L 318 (560)
+||.=..+.....+..+..+.|.. .++++-..|.|+-..|+..|= + .-|.+.||-.+
T Consensus 109 ~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l 188 (252)
T 2d5r_A 109 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYL 188 (252)
T ss_dssp HTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHH
T ss_pred cCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHH
Confidence 355444443322344444444433 233455778888889987553 1 13678899887
Q ss_pred cccccCCCCCccHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHH
Q 008596 319 YKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLK 366 (560)
Q Consensus 319 y~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~~k 366 (560)
.....+ .+.+|..||+. ||..= -+..|.|-.||.-|...+.+.
T Consensus 189 ~~~~~~--l~~gL~~la~~-L~v~r--~g~~HqAGsDsllT~~~F~km 231 (252)
T 2d5r_A 189 MKSCKN--LKGGLQEVAEQ-LELER--IGPQHQAGSDSLLTGMAFFKM 231 (252)
T ss_dssp GGGCTT--CCSSHHHHHHH-HTCCC--CSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHhcc--cCCCHHHHHHH-cCCCc--cCcccchhhhHHHHHHHHHHH
Confidence 766543 35789999986 67542 235799999999999998433
No 52
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A {Sinorhizobium meliloti} SCOP: c.76.1.0 PDB: 3szz_A 3t00_A 3t01_A 3t02_A
Probab=44.36 E-value=44 Score=35.26 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCC
Q 008596 479 TPEIKEILARTDARVNSLYTALPTNTMLIICTGHG 513 (560)
Q Consensus 479 ~~~~~~~~~~~~~~i~~iy~~lP~~t~liv~sg~g 513 (560)
+++..++++++|+.|.+|+++ ++.+||.|=||
T Consensus 224 s~~~~~~~~~~D~~l~~l~~~---~~~vivtsDHG 255 (427)
T 3szy_A 224 VPEANSFYEMFDRYLAELDGL---GAAIVVTADHG 255 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT---TCEEEEECSCC
T ss_pred cHHHHHHHHHHHHHHHHHHhC---CCEEEEEcCCC
Confidence 457889999999999999998 89999999998
No 53
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; structural genomics, PSI-2, protein genomics, MCSG, glycolysis isomerase; 2.60A {Thermoplasma acidophilum} PDB: 3idd_A
Probab=43.73 E-value=28 Score=36.78 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHhccCCCccEEEEecccchhhhhhhhhhHHHHHHHHHHHhhhhccccccccccccCCCCChHHHHHHHHH
Q 008596 410 SDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILART 489 (560)
Q Consensus 410 ~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (560)
+=++-++++++.++. .||+++.|-.... ..+ . ...+...++++.+
T Consensus 276 ~~~~k~~~~i~~l~~--~d~v~~n~~~~D~-~GH----------------------~----------gd~~~~~~aie~~ 320 (399)
T 3kd8_A 276 NYRGKIEKAVDLTSS--HDFVLVNIKATDV-AGH----------------------D----------GNYPLKRDVIEDI 320 (399)
T ss_dssp CHHHHHHHHHHHTTT--CSEEEEEEECC---------------------------------------CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhh--CCEEEEEecCcch-hhh----------------------c----------cCHHHHHHHHHHH
Confidence 334456677777765 5899988865431 110 0 0112356789999
Q ss_pred HHHHHHHHhhCCCCcEEEEEeCCCChH
Q 008596 490 DARVNSLYTALPTNTMLIICTGHGDTA 516 (560)
Q Consensus 490 ~~~i~~iy~~lP~~t~liv~sg~gd~~ 516 (560)
|++|.+|++ |.+++++||.+=||+|-
T Consensus 321 D~~l~~i~~-l~~~~~liITaDHg~p~ 346 (399)
T 3kd8_A 321 DRAMEPLKS-IGDHAVICVTGDHSTPC 346 (399)
T ss_dssp HHTTGGGGS-CTTTEEEEEEEC-----
T ss_pred HHHHHHHHc-cCCCCEEEEECCCCCCC
Confidence 999999999 99899999999999973
No 54
>4gtw_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2, alkaline phosphodiesterase...; bone mineralization, hydrolase; HET: NAG BMA MAN AMP; 2.70A {Mus musculus} PDB: 4gtx_A* 4gty_A* 4gtz_A* 4b56_A*
Probab=40.27 E-value=2.3e+02 Score=32.31 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhC-----CCCcEEEEEeCCCC
Q 008596 480 PEIKEILARTDARVNSLYTAL-----PTNTMLIICTGHGD 514 (560)
Q Consensus 480 ~~~~~~~~~~~~~i~~iy~~l-----P~~t~liv~sg~gd 514 (560)
++..+++..+|+.|.+|.++| ..||++|+.|=||=
T Consensus 287 ~e~~~~i~~vD~~IG~ll~~L~~~gl~dnT~VI~tSDHGm 326 (823)
T 4gtw_A 287 SEVIKALQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGM 326 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Confidence 467788999999999999875 67999999999993
No 55
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=32.80 E-value=54 Score=33.87 Aligned_cols=98 Identities=18% Similarity=0.162 Sum_probs=63.5
Q ss_pred cCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEeCchhhHHHHc-c-------------------ccCcccccccc
Q 008596 262 SGITHEMLSGVTTSLKDIQEEFLK---LVYKETILVGHSLENDLLALK-I-------------------SHGLVIDTAVL 318 (560)
Q Consensus 262 SGIT~e~L~~~~~tl~dVq~~L~~---~i~~~~ILVGHsL~~DL~aLk-i-------------------~Hp~viDT~~L 318 (560)
+||.=..+........+..+.|.. +++.+-..|.+.-..|+..|- + .-|.+.||-.|
T Consensus 130 ~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l 209 (333)
T 2p51_A 130 SGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYI 209 (333)
T ss_dssp TTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHH
T ss_pred cCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHH
Confidence 466555544333344444444442 333455677777788887553 1 13678898887
Q ss_pred cccccCCCCCccHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHH
Q 008596 319 YKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELAL 364 (560)
Q Consensus 319 y~~~~g~~~k~sLk~La~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~ 364 (560)
.....+ .+.+|..||+. ||..= -+..|.|-.||..|+..+.
T Consensus 210 ~~~~~~--l~ggL~~lA~~-L~v~R--ig~~HqAGsDSlLT~~~F~ 250 (333)
T 2p51_A 210 MKSVLN--NSKGLQDIADD-LQIHR--IGPQHQAGSDALLTARIFF 250 (333)
T ss_dssp HTTTTC--CCCCHHHHHHH-TTCCC--CSCTTSHHHHHHHHHHHHH
T ss_pred HHHhcc--ccCCHHHHHHH-cCCCc--cCcchhhhhHHHHHHHHHH
Confidence 766542 45689999985 67542 2367999999999999984
No 56
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=28.35 E-value=45 Score=33.70 Aligned_cols=74 Identities=18% Similarity=0.036 Sum_probs=50.3
Q ss_pred cCCCEEEEeCchhhHHHHc-c-------------------ccCccccccccccccc---C----------CCCCccHHHH
Q 008596 288 YKETILVGHSLENDLLALK-I-------------------SHGLVIDTAVLYKHPQ---G----------GSHKTSLRVL 334 (560)
Q Consensus 288 ~~~~ILVGHsL~~DL~aLk-i-------------------~Hp~viDT~~Ly~~~~---g----------~~~k~sLk~L 334 (560)
+.+-..|.++--.|+..|= + .-|.+.||-.+.+... | ...+.+|..|
T Consensus 153 ~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~l 232 (289)
T 1uoc_A 153 DDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTL 232 (289)
T ss_dssp CTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHH
T ss_pred CCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHH
Confidence 3455777778888887553 1 1267889876654321 2 1246689999
Q ss_pred HHHhcCcccccCCCCCChHHHHHHHHHHHH
Q 008596 335 AKKFLSREIQQSGFGHDSTEDARAAMELAL 364 (560)
Q Consensus 335 a~~~Lg~~IQ~~~~~HdSlEDA~Atl~L~~ 364 (560)
|+. ||.+.. +..|.|-.||.-|...+.
T Consensus 233 A~~-L~v~r~--g~~HqAGsDSllT~~~F~ 259 (289)
T 1uoc_A 233 ADE-LGLPRF--SIFTTTGGQSLLMLLSFC 259 (289)
T ss_dssp HHH-TTCCCC--GGGGSHHHHHHHHHHHHH
T ss_pred HHH-cCCCcc--CcccccHHHHHHHHHHHH
Confidence 986 787532 357999999999999874
No 57
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.35 E-value=1.5e+02 Score=25.97 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=46.3
Q ss_pred ecCCChHHHHHHHHHhccCCCccEEEEecccchhhhhhhhhhHHHHHHHHHHHhhhhccccccccccccCCCCChHHHHH
Q 008596 406 IPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEI 485 (560)
Q Consensus 406 i~c~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (560)
+..+||.|++..++++++..++..+...--.-+ + .-...+.+-... ..+..+. + +
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqde----k------rrrerleefekq-gvdvrtv-------e---d---- 60 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDE----K------RRRERLEEFEKQ-GVDVRTV-------E---D---- 60 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCH----H------HHHHHHHHHHTT-TCEEEEC-------C---S----
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchH----H------HHHHHHHHHHHc-CCceeee-------c---c----
Confidence 455799999999999999888776643222211 1 111111111100 0000100 0 1
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeC
Q 008596 486 LARTDARVNSLYTALPTNTMLIICTG 511 (560)
Q Consensus 486 ~~~~~~~i~~iy~~lP~~t~liv~sg 511 (560)
-..+.++|..||+.-|.-.+.++.|-
T Consensus 61 kedfrenireiwerypqldvvvivtt 86 (162)
T 2l82_A 61 KEDFRENIREIWERYPQLDVVVIVTT 86 (162)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 23577889999999999888777763
Done!