Query 008597
Match_columns 560
No_of_seqs 208 out of 856
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 2.4E-25 8.2E-30 235.8 24.3 403 8-541 22-436 (451)
2 3o7q_A L-fucose-proton symport 99.9 2.6E-23 8.8E-28 219.6 25.6 399 9-531 21-425 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.8 7E-19 2.4E-23 189.1 24.3 419 34-545 35-478 (491)
4 2gfp_A EMRD, multidrug resista 99.8 1.9E-19 6.4E-24 186.8 9.5 340 29-525 16-363 (375)
5 2cfq_A Lactose permease; trans 99.8 1.5E-18 5.1E-23 184.2 12.5 180 339-537 213-398 (417)
6 2xut_A Proton/peptide symporte 99.6 7.6E-15 2.6E-19 159.0 20.2 142 11-174 13-166 (524)
7 4gc0_A D-xylose-proton symport 99.6 6.9E-15 2.4E-19 157.7 19.3 415 30-555 26-479 (491)
8 4aps_A DI-OR tripeptide H+ sym 99.2 1.3E-10 4.5E-15 124.4 16.0 175 346-539 13-197 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.2 4.9E-11 1.7E-15 125.6 9.1 177 343-538 25-206 (451)
10 3o7q_A L-fucose-proton symport 99.0 2.2E-09 7.6E-14 112.6 14.4 165 365-536 45-227 (438)
11 2gfp_A EMRD, multidrug resista 99.0 4E-10 1.4E-14 116.3 6.3 165 350-533 4-169 (375)
12 2xut_A Proton/peptide symporte 99.0 2.7E-09 9.2E-14 115.3 12.9 173 345-536 11-196 (524)
13 2cfq_A Lactose permease; trans 98.4 6.5E-08 2.2E-12 102.1 1.5 170 342-531 3-180 (417)
14 4gc0_A D-xylose-proton symport 98.2 2.3E-06 7.7E-11 91.2 9.1 139 383-532 57-214 (491)
15 2knc_B Integrin beta-3; transm 30.2 1.2E+02 0.0039 24.0 6.1 35 521-555 15-53 (79)
16 3nd0_A SLL0855 protein; CLC fa 23.6 2.9E+02 0.0099 29.0 9.7 107 435-559 341-450 (466)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=2.4e-25 Score=235.77 Aligned_cols=403 Identities=15% Similarity=0.133 Sum_probs=271.8
Q ss_pred hhchhHHHHHHHHHHHHhcC-cccccccccHHHHhhcCCChhhhhHHHHHHhhhhhh-hhhHHHHHhhcccccccccccc
Q 008597 8 NLKSKWIATVASIWIQCCSG-ATYTFGIYSSTLKSSQNYDQSTLDTVSVFKDIGANV-GVLSGLLYSFATLNHHHRTRFS 85 (560)
Q Consensus 8 ~~~~rw~~l~~~~~i~~~~G-~~Y~fs~ys~~l~~~~~~s~~~~~~i~~~~~~g~~~-~~~~G~~~d~~g~~~~~~~~~~ 85 (560)
..+.+|..+....+.....+ ..+.++.+.+.+.+++ +|.+|...+..+..++..+ .++.|.+.||+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g---------- 90 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN---------- 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC----------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcC----------
Confidence 34556776666666654444 4577888889999999 9999999888888888876 788999999986
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhhcccchhhhhhHHHHhhhcc-CCCcceeeehhhh
Q 008597 86 FLRGPWVVHLTGAILCFAGYFLMWASVVGLIHSPPVPLMCLFMFLAAHSQTFFNTGNVVTGVMNFG-DYGGTIVGIMKGF 164 (560)
Q Consensus 86 ~~~Gp~~~~~~g~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~t~~~~Fp-~~RG~a~Gi~~~~ 164 (560)
+|.++.+|.++..+|.++....... .+ +++.+...-++.|.|.+..+.+......+++| ++||.+.|+...+
T Consensus 91 ----~r~~l~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 91 ----PRVFLPAGLILAAAVMLFMGFVPWA-TS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163 (451)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCHHH-HS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHHHHHHhhhhc-cc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence 8899999999999999886441110 22 24566667788899999999999999999998 6799999999999
Q ss_pred hhhhHHHHHHHHHHhcCCCchhHHHHHHHHhHHHHHhhheeeeecCCCCCccccchhhhhHHHHHHHHHHHHHHHHhccc
Q 008597 165 LGLGGAALIQAYDTIWKGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIF 244 (560)
Q Consensus 165 ~GLsa~i~s~i~~~~f~~~~~~fll~la~~~~~v~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (560)
.++|..+-..+...+. +..
T Consensus 164 ~~~g~~~g~~~~~~l~-------------------------------------------------------------~~~ 182 (451)
T 1pw4_A 164 HNVGGGIPPLLFLLGM-------------------------------------------------------------AWF 182 (451)
T ss_dssp HHHHHTSHHHHHHHHH-------------------------------------------------------------HHT
T ss_pred HHHHHHHHHHHHHHHH-------------------------------------------------------------HHh
Confidence 9988877654333221 000
Q ss_pred c-cchhHHHHHHHHHHHHhhcccccccccccccccCCCCCcccCCCCCCCCCCCCcCCccCCCCCcccccCCCCCccccc
Q 008597 245 T-FPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVK 323 (560)
Q Consensus 245 ~-~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (560)
+ ....+.+.....++..+..-. ..+ +..+..+ . + ++++.. +..+++. +.+
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~--~~~----~~~~~~~------~---~-~~~~~~-----~~~~~~~---~~~----- 233 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFA--MMR----DTPQSCG------L---P-PIEEYK-----NDYPDDY---NEK----- 233 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHH--HCC----CSSTTTC------C---C-SCTTTC-----CC----------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh--hcc----CCHhhcC------C---C-Chhhhc-----ccccccc---hhh-----
Confidence 1 111111111111111111000 011 0000000 0 0 000000 0000000 000
Q ss_pred cccccccccccccCcHHHHhcChhHHHHHHHHHHhhhhhhhhhhcHHHHHHH-cCCCCcchhHHHHHHHHhhhhhccccc
Q 008597 324 AEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGG 402 (560)
Q Consensus 324 ~~~~~~~~~~~~~~t~~~~lkt~~Fwll~~~~~~~~g~gl~~i~~~~~i~~~-lG~~~~~aa~lvSl~si~n~~GRl~~G 402 (560)
++++....+...++.+|++.+|.+.+..++.......+..+.+.+.++ +|.++.+++.+.++.++.+.+|++++|
T Consensus 234 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 309 (451)
T 1pw4_A 234 ----AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG 309 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011112235788999999999988888777666777888888887 699988889999999999999999999
Q ss_pred cchhhh--hhhcCCCchHHHHHHHHHHH-HHHHHHhhc---CcchHHHHHHHHHhhhhccccchhhHHHHhccCCchhhh
Q 008597 403 YVSDIV--LHRMGWERPSFIAITLATMS-VGHIVVASG---FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTI 476 (560)
Q Consensus 403 ~lsD~~--~~~~~~~R~~~l~~~~~l~~-~~~lll~~~---~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~~ 476 (560)
+++||+ ++ | ..+.+...+.. ++++++... +...+.+..++.|++.+........++.|.++.++.|+.
T Consensus 310 ~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 383 (451)
T 1pw4_A 310 WMSDKVFRGN-----R-GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTA 383 (451)
T ss_dssp HHHHHTSTTC-----H-HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHhcCC-----c-hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhH
Confidence 999998 43 2 23333333333 555544322 334456677888999998888888999999999999999
Q ss_pred hhHHHhhhhh-HHhhhhhhhhhhhcccccCCCCCcccCccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 008597 477 FNTIAIASPV-GSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIR 541 (560)
Q Consensus 477 yG~~~~a~~~-g~~ll~~~l~G~iyD~~g~~~~~~C~G~~cy~~~f~i~~~l~~la~vl~l~l~~r 541 (560)
+|+......+ |. .+++.+.|.++|..+ |+.+|++.+++++++.++.+++..+
T Consensus 384 ~~~~~~~~~~~g~-~~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 384 AGFTGLFGYLGGS-VAASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999887777 77 478899999999875 9999999999998888776655433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=2.6e-23 Score=219.60 Aligned_cols=399 Identities=14% Similarity=0.102 Sum_probs=262.3
Q ss_pred hchhHHHHHHHHHHHHhcCc-ccccccccHHHHhhcCCChhhhhHHHHHHhhhhhh-hhhHHHHHhhccccccccccccc
Q 008597 9 LKSKWIATVASIWIQCCSGA-TYTFGIYSSTLKSSQNYDQSTLDTVSVFKDIGANV-GVLSGLLYSFATLNHHHRTRFSF 86 (560)
Q Consensus 9 ~~~rw~~l~~~~~i~~~~G~-~Y~fs~ys~~l~~~~~~s~~~~~~i~~~~~~g~~~-~~~~G~~~d~~g~~~~~~~~~~~ 86 (560)
.+++|..+..........|. .+.++.+.+.+++++|+|.+|+..+..+..++..+ .++.|.+.||+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g----------- 89 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS----------- 89 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC-----------
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc-----------
Confidence 34455555444444444443 36788888999999999999999888888888876 788999999987
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhhcccchhhhhhHHHHhhhcc-CCCcceeeehhhhh
Q 008597 87 LRGPWVVHLTGAILCFAGYFLMWASVVGLIHSPPVPLMCLFMFLAAHSQTFFNTGNVVTGVMNFG-DYGGTIVGIMKGFL 165 (560)
Q Consensus 87 ~~Gp~~~~~~g~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~t~~~~Fp-~~RG~a~Gi~~~~~ 165 (560)
+|+++++|.+...+|.++.+.. ... .+++.++..-++.|.|.+..+.++.....+++| ++||.+.|+..++.
T Consensus 90 ---~r~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 162 (438)
T 3o7q_A 90 ---YKAGIITGLFLYALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 8999999999999999986443 222 346777788899999999999999999999998 57999999999999
Q ss_pred hhhHHHHHHHHHHhc-CCCchhHHHHHHHHhHHHHHhhheeeeecCCCCCccccchhhhhHHHHHHHHHHHHHHHHhccc
Q 008597 166 GLGGAALIQAYDTIW-KGRPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIF 244 (560)
Q Consensus 166 GLsa~i~s~i~~~~f-~~~~~~fll~la~~~~~v~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (560)
++|..+-..+...+. +..... .+.. ....++..+..+... ...
T Consensus 163 ~~g~~~g~~~~~~l~~~~~~~~-------~~~~--------------~~~~~~~~~~~~~~~---------------~~~ 206 (438)
T 3o7q_A 163 SFGAIIAVVFGQSLILSNVPHQ-------SQDV--------------LDKMSPEQLSAYKHS---------------LVL 206 (438)
T ss_dssp HHHHHHHHHHTTHHHHTSSCCC-------CHHH--------------HHHSCHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHHHHhcccccc-------cccc--------------cccCCcchhhhhhhh---------------hhh
Confidence 999998876554442 110000 0000 000000001010000 000
Q ss_pred ccchhHHHHHHHHHHHHhhcccccccccccccccCCCCCcccCCCCCCCCCCCCcCCccCCCCCcccccCCCCCcccccc
Q 008597 245 TFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKA 324 (560)
Q Consensus 245 ~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (560)
+....+.+...+.++..+. .. ..+ . |++..+ .++ + ++
T Consensus 207 ~w~~~~~~~~~~~~~~~~~--~~-~~~----~------------------p~~~~~------~~~-~------~~----- 243 (438)
T 3o7q_A 207 SVQTPYMIIVAIVLLVALL--IM-LTK----F------------------PALQSD------NHS-D------AK----- 243 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HH-HCC----C------------------CCCTTT------CCC-C------SS-----
T ss_pred hHHHHHHHHHHHHHHHHHH--HH-HHc----C------------------Cccccc------ccc-c------cc-----
Confidence 0001111111111111111 10 000 0 000000 000 0 00
Q ss_pred ccccccccccccCcHHHHhcChhHHHHHHHHHHhhhhhhhhhhcHHHH-HHHc-CCCCcchhHHHHHHHHhhhhhccccc
Q 008597 325 EFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQI-GESL-GYPTSAINSLVSLWSIWNFLGRFGGG 402 (560)
Q Consensus 325 ~~~~~~~~~~~~~t~~~~lkt~~Fwll~~~~~~~~g~gl~~i~~~~~i-~~~l-G~~~~~aa~lvSl~si~n~~GRl~~G 402 (560)
+.....++++.+|++.+|...+..++..+....+.++++.+ .++. |.++.+++...++..+.+.+|+++.|
T Consensus 244 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 244 -------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp -------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 00111346789999999999999888887777778889999 8776 99988999999999999999999999
Q ss_pred cchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHhhhhccccchhhHHHHhccCCchhhhhhHHHh
Q 008597 403 YVSDIVLHRMGWERPSFIAITLATMSVGHIVVASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAI 482 (560)
Q Consensus 403 ~lsD~~~~~~~~~R~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~~yG~~~~ 482 (560)
+++||+++| ..+.+...+.+++.++..........+..++.|++++..++....+..|.++.+ .+..-++..+
T Consensus 317 ~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 389 (438)
T 3o7q_A 317 WLISRFAPH------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM 389 (438)
T ss_dssp HHHHHSCHH------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHH
T ss_pred HHHHHhcch------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHH
Confidence 999998543 344455555555555444332223444568889999999999999889999955 7777777664
Q ss_pred hhhhHHhhhhhhhhhhhcccccCCCCCcccCccccHHHHHHHHHHHHHH
Q 008597 483 ASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 531 (560)
Q Consensus 483 a~~~g~~ll~~~l~G~iyD~~g~~~~~~C~G~~cy~~~f~i~~~l~~la 531 (560)
..+|. .++|.+.|.++|..|+ |+.+|.+.+++.++.
T Consensus 390 -~~~g~-~~~~~~~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 390 -TIIGG-GIVTPVMGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp -TTHHH-HHHHHHHHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred -HHHHH-HHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 44666 4788999999998864 888888766554443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.82 E-value=7e-19 Score=189.08 Aligned_cols=419 Identities=10% Similarity=0.018 Sum_probs=234.4
Q ss_pred cccHHHHhh-----cCCChhhhhHHHHHHhhhhhh-hhhHHHHHhh-ccccccccccccccCCcHHHHHHHHHHHHHHHH
Q 008597 34 IYSSTLKSS-----QNYDQSTLDTVSVFKDIGANV-GVLSGLLYSF-ATLNHHHRTRFSFLRGPWVVHLTGAILCFAGYF 106 (560)
Q Consensus 34 ~ys~~l~~~-----~~~s~~~~~~i~~~~~~g~~~-~~~~G~~~d~-~g~~~~~~~~~~~~~Gp~~~~~~g~~~~~~G~~ 106 (560)
...+.+++. +|+|.++...+.....++..+ .++.|.+.|| +| +|.++.+|.++..+|..
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g--------------~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG--------------ARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------chHHHHHHHHHHHHHHH
Confidence 344556666 999999999888888888876 7889999999 77 89999999999999988
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHhhcccchhhhhhHHHHhhhccC-C--CcceeeehhhhhhhhHHHHHHHHHHhcCCC
Q 008597 107 LMWASVVGLIHSPPVPLMCLFMFLAAHSQTFFNTGNVVTGVMNFGD-Y--GGTIVGIMKGFLGLGGAALIQAYDTIWKGR 183 (560)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~t~~~~Fp~-~--RG~a~Gi~~~~~GLsa~i~s~i~~~~f~~~ 183 (560)
+. ...+ +++.+...-++.|.|.+....+......++||+ + ||.+.++......+|+.+-..+...+.+..
T Consensus 101 ~~-----~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 173 (491)
T 4aps_A 101 VL-----ALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA 173 (491)
T ss_dssp HH-----HSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HH-----HHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 74 2222 355667777888999999999999999999974 5 667777777888887777665544433211
Q ss_pred chhHHHHHHHHhHHHHHhhheeeeec--CCCC--CccccchhhhhHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Q 008597 184 PSTYLLILALLPTFASLLFMSLVRIH--GTNS--ADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLL 259 (560)
Q Consensus 184 ~~~fll~la~~~~~v~~~~~~~ir~~--~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (560)
.....+.+......++++...+.+.. +.+. ++++.......-. .+..+. . +..+.+.
T Consensus 174 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~g~--~---l~~~~~~ 234 (491)
T 4aps_A 174 GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL--------------LVKVSL--A---VAGFIAI 234 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHH--------------HHHCCC--C---CHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHH--------------HHHHHH--H---HHHHHHH
Confidence 11111111111111111111111100 0000 0000000000000 000000 0 0000000
Q ss_pred HHhhcccccccccccccccCCCCCcccCCCCCCCCCCCCcCCccCCCCCcccccCCCCCccccccccccccccccccCcH
Q 008597 260 FLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNI 339 (560)
Q Consensus 260 ~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 339 (560)
++..+ . .++. + .+....... ........... ....+.+..+.
T Consensus 235 -~~~~~----~---------------------~~~~-~---------~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 276 (491)
T 4aps_A 235 -IVVMN----L---------------------VGWN-S---------LPAYINLLT-IVAIAIPVFYF-AWMISSVKVTS 276 (491)
T ss_dssp -HHHHH----H---------------------HSSC-C---------TTHHHHHHH-HHHHHHHHHHH-HHHC-------
T ss_pred -HHHHH----h---------------------ccCc-c---------cccchhhhh-HHHHHHHHHHH-HHHhhcccccH
Confidence 00000 0 0000 0 000000000 00000000000 00000000111
Q ss_pred HHHhcChhHHHHHHHHHHhhhhhhhhhhcHHHHHHH-cCCCCcchhHHHHHHHHhhhhhccccccchhhhhhhcCCCchH
Q 008597 340 LQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPS 418 (560)
Q Consensus 340 ~~~lkt~~Fwll~~~~~~~~g~gl~~i~~~~~i~~~-lG~~~~~aa~lvSl~si~n~~GRl~~G~lsD~~~~~~~~~R~~ 418 (560)
.+..+...++.+++..++.........+.++.+.++ .+.+..+.+.+.++.++...++.++.|+++||+++|+. .+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~ 355 (491)
T 4aps_A 277 TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPT 355 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchH
Confidence 222344455666655554444444455666777766 46665667778889999999999999999999987653 2333
Q ss_pred HHHHHHHHHHHHHHHHhh----------cCcchHHHHHHHHHhhhhccccchhhHHHHhccCCchhhhhhHHHhhhhhHH
Q 008597 419 FIAITLATMSVGHIVVAS----------GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGS 488 (560)
Q Consensus 419 ~l~~~~~l~~~~~lll~~----------~~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~~yG~~~~a~~~g~ 488 (560)
.+.+...+.+++++++.. .+...+.+..++.|++.+...+....++.|.+..++.|+..|+..+...+|.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 356 KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 444555555555543322 1334466678889999999999999999999999999999999988888888
Q ss_pred hhhhhhhhhhhcccccCCCCCcccCccccHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008597 489 YVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRF 545 (560)
Q Consensus 489 ~ll~~~l~G~iyD~~g~~~~~~C~G~~cy~~~f~i~~~l~~la~vl~l~l~~r~r~~ 545 (560)
. +++.+.|.+.|.. |...|.+.+++++++.++.++...+.|+.
T Consensus 436 ~-i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 436 A-LNAQLVTLYNAKS-------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp H-HHHHHGGGGGGSS-------------TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred H-HHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 7788888887752 77889999988888877666555444443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.78 E-value=1.9e-19 Score=186.78 Aligned_cols=340 Identities=9% Similarity=-0.014 Sum_probs=234.3
Q ss_pred ccccccccHHHHhhcCCChhhhhHHHHHHhhhhhh-hhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHHHH
Q 008597 29 TYTFGIYSSTLKSSQNYDQSTLDTVSVFKDIGANV-GVLSGLLYSFATLNHHHRTRFSFLRGPWVVHLTGAILCFAGYFL 107 (560)
Q Consensus 29 ~Y~fs~ys~~l~~~~~~s~~~~~~i~~~~~~g~~~-~~~~G~~~d~~g~~~~~~~~~~~~~Gp~~~~~~g~~~~~~G~~~ 107 (560)
.+.++.+-+.+++++|+|.+|...+.....++..+ .++.|.+.||+| +|+++.++.+...++..+
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--------------~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG--------------RRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC--------------CCCCCHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CchhHHHHHHHHHHHHHH
Confidence 34455556778999999999999888888888866 788999999986 778899999999999887
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHhhcccchhhhhhHHHHhhhcc-CCCcceeeehhhhhhhhHHHHHHHHHHhcCCCchh
Q 008597 108 MWASVVGLIHSPPVPLMCLFMFLAAHSQTFFNTGNVVTGVMNFG-DYGGTIVGIMKGFLGLGGAALIQAYDTIWKGRPST 186 (560)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~t~~~~Fp-~~RG~a~Gi~~~~~GLsa~i~s~i~~~~f~~~~~~ 186 (560)
.... .+++.+....++.|.+.+..+++......+++| ++|+.+.|+...+.++|..+-..+...+.+
T Consensus 82 ~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----- 149 (375)
T 2gfp_A 82 AVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT----- 149 (375)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-----
T ss_pred HHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----
Confidence 5443 135667777888999999999999999999997 689999999999999888777544332211
Q ss_pred HHHHHHHHhHHHHHhhheeeeecCCCCCccccchhhhhHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhhccc
Q 008597 187 YLLILALLPTFASLLFMSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMIIIILENIFTFPLWARIITFLFLLFLLSSPL 266 (560)
Q Consensus 187 fll~la~~~~~v~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~ 266 (560)
..+....+.+.... .++.....
T Consensus 150 --------------------------------------------------------~~~~~~~~~~~~~~--~~~~~~~~ 171 (375)
T 2gfp_A 150 --------------------------------------------------------MWNWRACYLFLLVL--CAGVTFSM 171 (375)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHH--HHHHHCCC
T ss_pred --------------------------------------------------------hccHHHHHHHHHHH--HHHHHHHH
Confidence 00000001111011 11111111
Q ss_pred ccccccccccccCCCCCcccCCCCCCCCCCCCcCCccCCCCCcccccCCCCCccccccccccccccccccCcHHHHhcCh
Q 008597 267 GIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCTL 346 (560)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~lkt~ 346 (560)
....| |++..+ + + + ++...+.++.+|+|
T Consensus 172 ~~~~~----------------------~~~~~~---------~-~------~--------------~~~~~~~~~~~~~~ 199 (375)
T 2gfp_A 172 ARWMP----------------------ETRPVD---------A-P------R--------------TRLLTSYKTLFGNS 199 (375)
T ss_dssp CCSSC----------------------CCSTTT---------C-C------C--------------CCTTTCSTHHHHHH
T ss_pred HHHCc----------------------ccCCCC---------c-c------c--------------ccHHHHHHHHhcCc
Confidence 11010 000000 0 0 0 00012346789999
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcHHHHHHH-cCCCCcchhHHHHHHHHhhhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 008597 347 NFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLA 425 (560)
Q Consensus 347 ~Fwll~~~~~~~~g~gl~~i~~~~~i~~~-lG~~~~~aa~lvSl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~l~~~~~ 425 (560)
.+|.+.+..++.......+....+.+.++ +|.++.+++.+.++.++...+|+++.|+++||.++ +.......
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------~~~~~~~~- 272 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST------LMWQSVIC- 272 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH------HHHHHHHH-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-
Confidence 99999888877766666666777777766 68888888889999999999999999999999853 12221111
Q ss_pred HHHHHHH--HHhh---cCcchHHHHHHHHHhhhhccccchhhHHHHhccCCchhhhhhHHHhhhhhHHhhhhhhhhhhhc
Q 008597 426 TMSVGHI--VVAS---GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY 500 (560)
Q Consensus 426 l~~~~~l--ll~~---~~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~~yG~~~~a~~~g~~ll~~~l~G~iy 500 (560)
....+.. .... ++...+.+..++.|+++|..++.....+.|.+. ++.|+..|+......+|.. +++.+.|.++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~ 350 (375)
T 2gfp_A 273 CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASLSAMLP 350 (375)
T ss_dssp HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTTCTHHH
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 1112211 1111 133445567888999999999999999999998 8999999999888888884 7888999998
Q ss_pred ccccCCCCCcccCccccHHHHHHHH
Q 008597 501 DNVASGEGNSCNGTHCFMLSFLIMA 525 (560)
Q Consensus 501 D~~g~~~~~~C~G~~cy~~~f~i~~ 525 (560)
|..+ |+..+.+.+
T Consensus 351 ~~~~------------~~~~~~~~~ 363 (375)
T 2gfp_A 351 QTGQ------------GSLGLLMTL 363 (375)
T ss_dssp HHHH------------HHHHHHHHH
T ss_pred cCCc------------ccHHHHHHH
Confidence 8654 777777644
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.76 E-value=1.5e-18 Score=184.15 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=125.4
Q ss_pred HHHHhcChhHHHHHHHHHHhhhhhhhhhhcHHHHHHHc-CC---CCcchhHHHHHHHHhhhhhccccccchhhhhhhcCC
Q 008597 339 ILQSVCTLNFWLLFVAMLCGMGSGLATVNNISQIGESL-GY---PTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGW 414 (560)
Q Consensus 339 ~~~~lkt~~Fwll~~~~~~~~g~gl~~i~~~~~i~~~l-G~---~~~~aa~lvSl~si~n~~GRl~~G~lsD~~~~~~~~ 414 (560)
.++.+|++++|.+++..++.......+..+.+.+.++. +. +....+...++..+.+.+|+++.|+++||+++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--- 289 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--- 289 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH---
Confidence 46789999999887654443322223334456665543 21 122335566788889999999999999999643
Q ss_pred CchHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHhhhhccccchhhHHHHhccCCchhhhhhHH-HhhhhhHHhhhh
Q 008597 415 ERPSFIAITLATMSVGHIVVAS-GFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTI-AIASPVGSYVCS 492 (560)
Q Consensus 415 ~R~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~~yG~~-~~a~~~g~~ll~ 492 (560)
..+.+...+.+++.+++.. ++...+.+..++.+++++.........++|.+..+..|+.+|+. ..+..+|.. ++
T Consensus 290 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~g 365 (417)
T 2cfq_A 290 ---NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FM 365 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-Hh
Confidence 3444455555555554443 33334555556677777766666678999999999999999995 667777874 78
Q ss_pred hhhhhhhcccccCCCCCcccCccccHHHHHHHHHHHHHHHHHHHH
Q 008597 493 VRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFL 537 (560)
Q Consensus 493 ~~l~G~iyD~~g~~~~~~C~G~~cy~~~f~i~~~l~~la~vl~l~ 537 (560)
|.+.|.++|..+ |+..|.+++++++++.++.+.
T Consensus 366 p~l~G~l~~~~g------------~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 366 SVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp THHHHTHHHHSH------------HHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHh
Confidence 889999999765 889999999988888766543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.63 E-value=7.6e-15 Score=159.04 Aligned_cols=142 Identities=11% Similarity=-0.079 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHHHhcCcccccccccHHHHhhcC------CChhhhhHHHHHHhhhhhh-hhhHHHHHhhc-cccccccc
Q 008597 11 SKWIATVASIWIQCCSGATYTFGIYSSTLKSSQN------YDQSTLDTVSVFKDIGANV-GVLSGLLYSFA-TLNHHHRT 82 (560)
Q Consensus 11 ~rw~~l~~~~~i~~~~G~~Y~fs~ys~~l~~~~~------~s~~~~~~i~~~~~~g~~~-~~~~G~~~d~~-g~~~~~~~ 82 (560)
+-|...+...+...+... ..+.....+++++| +|..+...+.....++..+ .++.|.+.||+ |
T Consensus 13 ~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------- 83 (524)
T 2xut_A 13 QIPYIIASEACERFSFYG--MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------- 83 (524)
T ss_dssp CCTHHHHHHHHHHHHHHH--HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC-------
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 335555444444433211 12334456788899 9999999888888788776 67899999998 7
Q ss_pred cccccCCcHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhhcccchhhhhhHHHHhhhccC-CCcceeee-
Q 008597 83 RFSFLRGPWVVHLTGAILCFAGYFLMWASVVGLIHSPPVPLMCLFMFLAAHSQTFFNTGNVVTGVMNFGD-YGGTIVGI- 160 (560)
Q Consensus 83 ~~~~~~Gp~~~~~~g~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~t~~~~Fp~-~RG~a~Gi- 160 (560)
+|.++.++.++..++.+++..+ . .+++.+...-++.|.|.+..+.+......++||+ +||.+.++
T Consensus 84 -------~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 150 (524)
T 2xut_A 84 -------KYNTILWLSLIYCVGHAFLAIF-----E-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAF 150 (524)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHT-----S-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHHHHh-----c-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHH
Confidence 8899999999999998875332 2 1355666667888999999999999999999985 68877666
Q ss_pred --hhhhhhhhHHHHHH
Q 008597 161 --MKGFLGLGGAALIQ 174 (560)
Q Consensus 161 --~~~~~GLsa~i~s~ 174 (560)
......+|+++-..
T Consensus 151 ~~~~~~~~~g~~~g~~ 166 (524)
T 2xut_A 151 DMFYFTINFGSFFASL 166 (524)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 66667776666543
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.63 E-value=6.9e-15 Score=157.67 Aligned_cols=415 Identities=13% Similarity=0.060 Sum_probs=224.9
Q ss_pred ccccccc---HHHHhhcCCC--------hhhhhHHHHHHhhhhhh-hhhHHHHHhhccccccccccccccCCcHHHHHHH
Q 008597 30 YTFGIYS---STLKSSQNYD--------QSTLDTVSVFKDIGANV-GVLSGLLYSFATLNHHHRTRFSFLRGPWVVHLTG 97 (560)
Q Consensus 30 Y~fs~ys---~~l~~~~~~s--------~~~~~~i~~~~~~g~~~-~~~~G~~~d~~g~~~~~~~~~~~~~Gp~~~~~~g 97 (560)
|..++++ +.+++.++.+ .++...+..+..+|..+ +++.|++.||+| +|++++++
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G--------------Rk~~l~~~ 91 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG--------------RRDSLKIA 91 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CHHHHHHH
Confidence 4455555 4556665332 22333455566677777 577899999986 89999999
Q ss_pred HHHHHHHHHHHHHHHhccC-----------CCCcHHHHHHHHHHhhcccchhhhhhHHHHhhhcc-CCCcceeeehhhhh
Q 008597 98 AILCFAGYFLMWASVVGLI-----------HSPPVPLMCLFMFLAAHSQTFFNTGNVVTGVMNFG-DYGGTIVGIMKGFL 165 (560)
Q Consensus 98 ~~~~~~G~~~~~l~~~~~~-----------~~~~~~~~~~~~~l~g~g~~~~~~~~~~t~~~~Fp-~~RG~a~Gi~~~~~ 165 (560)
.+++.+|-++......+.. ...+++.+.+.=++.|.|.|..+..+..-...+.| ++||...++...+.
T Consensus 92 ~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~ 171 (491)
T 4gc0_A 92 AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAI 171 (491)
T ss_dssp HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhh
Confidence 9999999887432111110 11246677778899999999999999999999997 57999888877777
Q ss_pred hhhHHHHHHHHHHhcCC--------CchhHHHHHHHHhHHHHHhhheeeeecCCCCCccccchhhhhHHHHHHHHHHHHH
Q 008597 166 GLGGAALIQAYDTIWKG--------RPSTYLLILALLPTFASLLFMSLVRIHGTNSADDKKHLNAFSAVALTIAAYLMII 237 (560)
Q Consensus 166 GLsa~i~s~i~~~~f~~--------~~~~fll~la~~~~~v~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 237 (560)
.+|..+-..+....... +...++..+...|..+.++..+++ |+++ + +++
T Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---peSp-----~-------------~L~-- 228 (491)
T 4gc0_A 172 IFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTV---PESP-----R-------------WLM-- 228 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGS---CCCH-----H-------------HHH--
T ss_pred hhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcC---CCCh-----H-------------HHH--
Confidence 66665554333222110 112222222223333222222211 1110 0 000
Q ss_pred HHHhcccccchhHHHHHHHHHHHHhhcccccccccccccccCCCCCcccCCCCCCCCCCCCcCCccCCCCCcccccCCCC
Q 008597 238 IILENIFTFPLWARIITFLFLLFLLSSPLGIAIKAQREDTTRLSPTFATQRSPLVDCPETTTSTKFSASQDSVAYHELPG 317 (560)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (560)
.........+.. ++... . +..+++
T Consensus 229 ----~~~~~~~a~~~l---------------------------------------~~~~~-~------~~~~~~------ 252 (491)
T 4gc0_A 229 ----SRGKQEQAEGIL---------------------------------------RKIMG-N------TLATQA------ 252 (491)
T ss_dssp ----HTTCHHHHHHHH---------------------------------------HHHHH-H------HHHHHH------
T ss_pred ----HcCchhHHHHhH---------------------------------------HHhcC-C------chhHHH------
Confidence 000000000000 00000 0 000000
Q ss_pred CccccccccccccccccccCcHHHHhcChhHHHHHHHHHHhhhhhhhhh-hcHHHHHHHcCCCCcchhHHHHHHHHhhhh
Q 008597 318 EESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGSGLATV-NNISQIGESLGYPTSAINSLVSLWSIWNFL 396 (560)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~t~~~~lkt~~Fwll~~~~~~~~g~gl~~i-~~~~~i~~~lG~~~~~aa~lvSl~si~n~~ 396 (560)
.. +. ++......+........+.+..++......+....+...+ ...+.+.+..+.+.........+.++.+.+
T Consensus 253 ~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4gc0_A 253 VQ----EI-KHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLT 327 (491)
T ss_dssp HH----HH-HHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HH----HH-HHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHH
Confidence 00 00 0000000111222344455555554444444444444333 445566677787766666666788899999
Q ss_pred hccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh----hcCcch-HHHHHHHHHhhhhccc-cchhhHHHHhccC
Q 008597 397 GRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA----SGFPGN-LYVGSIIVGVCYGCQW-SLMPTITYEIFGV 470 (560)
Q Consensus 397 GRl~~G~lsD~~~~~~~~~R~~~l~~~~~l~~~~~lll~----~~~~~~-l~~~~~l~G~~~G~~~-~l~p~i~~e~FG~ 470 (560)
+-++.+++.||++|| ..+......++++++.+. ...+.. ..+...+...+++..+ ++...+++|+|..
T Consensus 328 ~~~~~~~l~dr~Grr------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt 401 (491)
T 4gc0_A 328 FTVLAIMTVDKFGRK------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 401 (491)
T ss_dssp HHHHHHHHHHHHCSH------HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhcCc------chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence 999999999999644 333344444444443322 122222 2222333333444333 3445788999999
Q ss_pred CchhhhhhHHHhhhhhHHhhhhhhhhhhhcccccCCCCCcccCccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 008597 471 GHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLFIRTRRFYKQVV 550 (560)
Q Consensus 471 k~~g~~yG~~~~a~~~g~~ll~~~l~G~iyD~~g~~~~~~C~G~~cy~~~f~i~~~l~~la~vl~l~l~~r~r~~~~~~~ 550 (560)
+.+++..|+......++++ +.+.+...+.+..... ....+..+|++.+++++++.+...+....||.+--||+
T Consensus 402 ~~R~~~~g~~~~~~~~~~~-i~~~~~p~l~~~~~~~------~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei 474 (491)
T 4gc0_A 402 AIRGKALAIAVAAQWLANY-FVSWTFPMMDKNSWLV------AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEL 474 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHH-HHHTHHHHHCHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHH
Confidence 9999999998776667764 4444554444321100 00114467888899999988877766667888777777
Q ss_pred HHhhc
Q 008597 551 LRRLG 555 (560)
Q Consensus 551 ~~~~~ 555 (560)
+|-.+
T Consensus 475 ~~~f~ 479 (491)
T 4gc0_A 475 EALWE 479 (491)
T ss_dssp GGGTC
T ss_pred HHHhC
Confidence 55443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.21 E-value=1.3e-10 Score=124.39 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=141.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhcHHHHHHH------cCCCCcchhHHHHHHHHhhhhhccccccchhh-hhhhcCCCchH
Q 008597 346 LNFWLLFVAMLCGMGSGLATVNNISQIGES------LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDI-VLHRMGWERPS 418 (560)
Q Consensus 346 ~~Fwll~~~~~~~~g~gl~~i~~~~~i~~~------lG~~~~~aa~lvSl~si~n~~GRl~~G~lsD~-~~~~~~~~R~~ 418 (560)
+.+|.++...++.......+...++.+.++ +|.++.+.+.+.++..+...++.+++|+++|| +++ +.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~------r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGA------RP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------hH
Confidence 467888777777666655666777777654 79999999999999999999999999999999 754 34
Q ss_pred HHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhccccchhhHHHHhccCCc--hhhhhhHHHhhhhhHHhhhhhhh
Q 008597 419 FIAITLATMSVGHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGH--MGTIFNTIAIASPVGSYVCSVRI 495 (560)
Q Consensus 419 ~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~--~g~~yG~~~~a~~~g~~ll~~~l 495 (560)
.+.+...+.+++.++.. .++...+++..++.|++.|...+..+++++|.+..++ .+..+++...+..+|. .++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA-FIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH-HHHHHH
Confidence 55666666677766555 3455678888899999999999999999999999988 8888988888888888 478889
Q ss_pred hhhhcccccCCCCCcccCccccHHHHHHHHHHHHHHHHHHHHHH
Q 008597 496 IGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLLF 539 (560)
Q Consensus 496 ~G~iyD~~g~~~~~~C~G~~cy~~~f~i~~~l~~la~vl~l~l~ 539 (560)
.|.+.|..+ |+..|.+.++.++++.++.+...
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998765 99999999888877776655443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.15 E-value=4.9e-11 Score=125.60 Aligned_cols=177 Identities=16% Similarity=0.087 Sum_probs=139.2
Q ss_pred hcChhHHHHHHHHHHhhhhhhhhhhcHHHHHHHcCCCCcchhHHHHHHHHhhhhhccccccchhhhhhhcCCCchHHHHH
Q 008597 343 VCTLNFWLLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAI 422 (560)
Q Consensus 343 lkt~~Fwll~~~~~~~~g~gl~~i~~~~~i~~~lG~~~~~aa~lvSl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~l~~ 422 (560)
.+.+.++.+++..++......++...++.+.+++ .++.+.+.+.++..+...++.+.+|+++||+++| ..+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~ 97 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHH
Confidence 3445666666666655544444455667778888 8999999999999999999999999999999643 45556
Q ss_pred HHHHHHHHHHHHh-----hcCcchHHHHHHHHHhhhhccccchhhHHHHhccCCchhhhhhHHHhhhhhHHhhhhhhhhh
Q 008597 423 TLATMSVGHIVVA-----SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIG 497 (560)
Q Consensus 423 ~~~l~~~~~lll~-----~~~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~~yG~~~~a~~~g~~ll~~~l~G 497 (560)
...+.+++.++.. .++...+++..++.|++.|..++...++++|.+..|+.+...|+...+..+|. ++++.+.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~ 176 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6666666665543 34556788889999999999999999999999999999999999988888888 47888888
Q ss_pred hhcccccCCCCCcccCccccHHHHHHHHHHHHHHHHHHHHH
Q 008597 498 YIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAFLL 538 (560)
Q Consensus 498 ~iyD~~g~~~~~~C~G~~cy~~~f~i~~~l~~la~vl~l~l 538 (560)
.+.+..+ .|+.+|++.++++++..++..+.
T Consensus 177 ~l~~~~g-----------~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 177 LGMAWFN-----------DWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHTC-----------CSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-----------cHHHHHHHHHHHHHHHHHHHHhh
Confidence 8887654 28889999998887776555444
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.02 E-value=2.2e-09 Score=112.60 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=124.4
Q ss_pred hhhcHHHHHHHcCCCCcchhHHHHHHHHhhhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH---h-hcCcc
Q 008597 365 TVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVV---A-SGFPG 440 (560)
Q Consensus 365 ~i~~~~~i~~~lG~~~~~aa~lvSl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~l~~~~~l~~~~~lll---~-~~~~~ 440 (560)
...-++.+.+++|.++.+.+.+.++..+...++.+.+|+++||+++| ..+.+...+.+++.++. . .++..
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLYALGAALFWPAAEIMNYT 118 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHHHHHHHHHHhccccccHH
Confidence 33456778889999999999999999999999999999999999643 45566666667766654 3 34556
Q ss_pred hHHHHHHHHHhhhhccccchhhHHHHhccCCchhhhhhHHHhhhhhHHhhhhhhhhhhhc-ccccCCCC------C----
Q 008597 441 NLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIY-DNVASGEG------N---- 509 (560)
Q Consensus 441 ~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~~yG~~~~a~~~g~~ll~~~l~G~iy-D~~g~~~~------~---- 509 (560)
.+++.-++.|++.|..++..+++++|.+..|+.+...|+...+..+|.. +++.+.+.+. +..+...+ .
T Consensus 119 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (438)
T 3o7q_A 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLILSNVPHQSQDVLDKMSPEQL 197 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHHHTSSCCCCHHHHHHSCHHHH
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccccccccccccCCcchh
Confidence 7788889999999999999999999999999999999999888888884 7888888888 43321000 0
Q ss_pred ---cccCccccHHHHHHHHHHHHHHHHHHH
Q 008597 510 ---SCNGTHCFMLSFLIMASVAFVGCLVAF 536 (560)
Q Consensus 510 ---~C~G~~cy~~~f~i~~~l~~la~vl~l 536 (560)
.-.....|+..|.+.++++++..++..
T Consensus 198 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 198 SAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000001178888887777666554433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.97 E-value=4e-10 Score=116.29 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=129.3
Q ss_pred HHHHHHHHhhhhhhhhhhcHHHHHHHcCCCCcchhHHHHHHHHhhhhhccccccchhhhhhhcCCCchHHHHHHHHHHHH
Q 008597 350 LLFVAMLCGMGSGLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSV 429 (560)
Q Consensus 350 ll~~~~~~~~g~gl~~i~~~~~i~~~lG~~~~~aa~lvSl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~l~~~~~l~~~ 429 (560)
++++..++......++...++.+.+++|.++.+.+.+.++..+.+.++.+.+|+++||+++|+ .+.....+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP------VILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch------hHHHHHHHHHH
Confidence 344444444444444555677888899999999999999999999999999999999997554 23344445555
Q ss_pred HHHHHh-hcCcchHHHHHHHHHhhhhccccchhhHHHHhccCCchhhhhhHHHhhhhhHHhhhhhhhhhhhcccccCCCC
Q 008597 430 GHIVVA-SGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEG 508 (560)
Q Consensus 430 ~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~~yG~~~~a~~~g~~ll~~~l~G~iyD~~g~~~~ 508 (560)
+.++.. .++...+++..++.|++.|...+..+.++.|.+..|+.+...++...+..+|. .+++.+.|.+.|..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-LLAPLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH-HHHHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcc----
Confidence 554433 34455677788999999999999999999999999999999999998888888 488889999998765
Q ss_pred CcccCccccHHHHHHHHHHHHHHHH
Q 008597 509 NSCNGTHCFMLSFLIMASVAFVGCL 533 (560)
Q Consensus 509 ~~C~G~~cy~~~f~i~~~l~~la~v 533 (560)
|+..|.+.++++++..+
T Consensus 153 --------~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 153 --------WRACYLFLLVLCAGVTF 169 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHHHHHHH
Confidence 89999988887766654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.97 E-value=2.7e-09 Score=115.29 Aligned_cols=173 Identities=15% Similarity=0.163 Sum_probs=133.5
Q ss_pred ChhHHHHHHHHHHhhhhhhhhhhcHHHHHH-HcC------CCCcchhHHHHHHHHhhhhhccccccchhhh-hhhcCCCc
Q 008597 345 TLNFWLLFVAMLCGMGSGLATVNNISQIGE-SLG------YPTSAINSLVSLWSIWNFLGRFGGGYVSDIV-LHRMGWER 416 (560)
Q Consensus 345 t~~Fwll~~~~~~~~g~gl~~i~~~~~i~~-~lG------~~~~~aa~lvSl~si~n~~GRl~~G~lsD~~-~~~~~~~R 416 (560)
++.+|.+++..++......++...++.+.+ ++| .++.+++.+.+++.+...++.+.+|+++||+ ++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----- 85 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----- 85 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 357788877777776665566677777654 578 8999999999999999999999999999998 643
Q ss_pred hHHHHHHHHHHHHHHHHHhh-c-CcchHHHHHHHHHhhhhccccchhhHHHHhccCCchhh---hhhHHHhhhhhHHhhh
Q 008597 417 PSFIAITLATMSVGHIVVAS-G-FPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGVGHMGT---IFNTIAIASPVGSYVC 491 (560)
Q Consensus 417 ~~~l~~~~~l~~~~~lll~~-~-~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~---~yG~~~~a~~~g~~ll 491 (560)
..+.+...+.+++.++... + +...+++..++.|++.|...+..+++++|.+..++.+. .+|+...+..+|. .+
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~-~~ 163 (524)
T 2xut_A 86 -NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS-FF 163 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH-HH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH-HH
Confidence 3444555666666655443 4 55667788899999999999999999999999998864 4555777777777 47
Q ss_pred hhhhhhhhcccccCCCCCcccCccccHHHHHHHHHHHHHHHHHHH
Q 008597 492 SVRIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVGCLVAF 536 (560)
Q Consensus 492 ~~~l~G~iyD~~g~~~~~~C~G~~cy~~~f~i~~~l~~la~vl~l 536 (560)
++.+.|.+.|..+ |+..|.+.+++++++.++.+
T Consensus 164 g~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 164 ASLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHHH
Confidence 8888899988764 99999999888777665543
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.38 E-value=6.5e-08 Score=102.05 Aligned_cols=170 Identities=16% Similarity=0.120 Sum_probs=103.4
Q ss_pred HhcChhHHHHHHHHHHhhhhhhhhhhcHHHHHHH-cCCCCcchhHHHHHHHHhhhhhccccccchhhhhhhcCCCchHHH
Q 008597 342 SVCTLNFWLLFVAMLCGMGSGLATVNNISQIGES-LGYPTSAINSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFI 420 (560)
Q Consensus 342 ~lkt~~Fwll~~~~~~~~g~gl~~i~~~~~i~~~-lG~~~~~aa~lvSl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~l 420 (560)
.+||++||.+....++......++...++.+.++ +|.++.+.+.++++..+...++++.+|+++||+++|+ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~-----~l- 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK-----YL- 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC-----HH-
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HH-
Confidence 6799999999887766554444556677877764 7999999999999999999999999999999998553 22
Q ss_pred HHHHHHHHH---HHHHHhh-cCc-chHHHHHHHHHhhhhccccchhhHHHHhcc--CCchhhhhhHHHhhhhhHHhhhhh
Q 008597 421 AITLATMSV---GHIVVAS-GFP-GNLYVGSIIVGVCYGCQWSLMPTITYEIFG--VGHMGTIFNTIAIASPVGSYVCSV 493 (560)
Q Consensus 421 ~~~~~l~~~---~~lll~~-~~~-~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG--~k~~g~~yG~~~~a~~~g~~ll~~ 493 (560)
.+...+.++ ..+.... ... ..+.....+.|+..|..++.....+.+... .++.+..+|.......+|. .++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW-ALGA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHHH
Confidence 222222211 1111110 000 011222223333333333222233333322 1456777888766666676 3677
Q ss_pred hhhhhhcccccCCCCCcccCccccHHHHHHHHHHHHHH
Q 008597 494 RIIGYIYDNVASGEGNSCNGTHCFMLSFLIMASVAFVG 531 (560)
Q Consensus 494 ~l~G~iyD~~g~~~~~~C~G~~cy~~~f~i~~~l~~la 531 (560)
.+.|.+.|. + ++..|++.+++.++.
T Consensus 156 ~l~~~l~~~-~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 156 SIVGIMFTI-N------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHH-C------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHh-c------------hhHHHHHHHHHHHHH
Confidence 788888873 2 788888776654433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.22 E-value=2.3e-06 Score=91.18 Aligned_cols=139 Identities=17% Similarity=0.116 Sum_probs=96.2
Q ss_pred hhHHHHHHHHhhhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-------------------hcCcchHH
Q 008597 383 INSLVSLWSIWNFLGRFGGGYVSDIVLHRMGWERPSFIAITLATMSVGHIVVA-------------------SGFPGNLY 443 (560)
Q Consensus 383 aa~lvSl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~l~~~~~l~~~~~lll~-------------------~~~~~~l~ 443 (560)
.+.++|.+.++..+|-+++|+++||++| +..+.+...++.++.++.+ .++...++
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GR------k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGR------RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 3567788999999999999999999964 4556666666666655433 23445678
Q ss_pred HHHHHHHhhhhccccchhhHHHHhccCCchhhhhhHHHhhhhhHHhhhhhhhhhhhcccccCCCCCcccCccccHHHHHH
Q 008597 444 VGSIIVGVCYGCQWSLMPTITYEIFGVGHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNGTHCFMLSFLI 523 (560)
Q Consensus 444 ~~~~l~G~~~G~~~~l~p~i~~e~FG~k~~g~~yG~~~~a~~~g~~ll~~~l~G~iyD~~g~~~~~~C~G~~cy~~~f~i 523 (560)
++=++.|++.|+..+..|..++|....++.+...++...+..+|.. ++..+.....+..... -.+...++..+.+
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 205 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYFIARSGDAS----WLNTDGWRYMFAS 205 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTSCTT----TTTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchhhccccccc----cccchhhHHHhhh
Confidence 8889999999999999999999999999999999998887777764 4443333333322110 0122345555555
Q ss_pred HHHHHHHHH
Q 008597 524 MASVAFVGC 532 (560)
Q Consensus 524 ~~~l~~la~ 532 (560)
.....++..
T Consensus 206 ~~~~~~~~~ 214 (491)
T 4gc0_A 206 ECIPALLFL 214 (491)
T ss_dssp THHHHHHHH
T ss_pred hhhhhhhhh
Confidence 554444433
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.22 E-value=1.2e+02 Score=23.98 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HhhhhhhhHHHHHHhhc
Q 008597 521 FLIMASVAFVGCLVAFLL----FIRTRRFYKQVVLRRLG 555 (560)
Q Consensus 521 f~i~~~l~~la~vl~l~l----~~r~r~~~~~~~~~~~~ 555 (560)
.-+.+++.++++++-+++ .+.+||-|++..+||.+
T Consensus 15 ~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~ 53 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERAR 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444554432222 33456666666555543
No 16
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=23.62 E-value=2.9e+02 Score=28.97 Aligned_cols=107 Identities=10% Similarity=0.159 Sum_probs=61.1
Q ss_pred hhcCcchHHHHHHHHHhhhhccccchhhHHHHhccC-CchhhhhhHHHhhhhhHHhhhhhhhhhhhcccccCCCCCcccC
Q 008597 435 ASGFPGNLYVGSIIVGVCYGCQWSLMPTITYEIFGV-GHMGTIFNTIAIASPVGSYVCSVRIIGYIYDNVASGEGNSCNG 513 (560)
Q Consensus 435 ~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~~e~FG~-k~~g~~yG~~~~a~~~g~~ll~~~l~G~iyD~~g~~~~~~C~G 513 (560)
....++..+..++.+|...|..++.. ....|+. .....+|.++.++..+++ ..+.|+.+.+.-.|-.
T Consensus 341 gsG~~GGif~Psl~iGA~~G~~~g~~---~~~~~p~~~~~~~~~a~vGmaa~~a~-v~~aPlt~ivlv~Elt-------- 408 (466)
T 3nd0_A 341 GSGAIGGIFAPMLGIASIVSVAMARH---FHLLFPSQIPEPAVMAIAGMGALVAA-TVRAPLTAILLTIEMT-------- 408 (466)
T ss_dssp HTTCBCCSHHHHHHHHHHHHHHHHHH---HHHHCTTTCSSTHHHHHHTTSHHHHH-HHSCHHHHHHHHHHTT--------
T ss_pred hCCCCCceehHHHHHHHHHHHHHHHH---HHHhCCccccCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHH--------
Confidence 35567788888899999888765543 2333431 234567888888888777 4677777754433321
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHhhcCCCC
Q 008597 514 THCFMLSFLIMASVAFVGCLVAFLLFI--RTRRFYKQVVLRRLGHSSR 559 (560)
Q Consensus 514 ~~cy~~~f~i~~~l~~la~vl~l~l~~--r~r~~~~~~~~~~~~~~~~ 559 (560)
+.|+...-++ ..+++ +.++.. ..+..|++.+|+-++++++
T Consensus 409 -g~~~~~lpl~-ia~~i----A~~v~~~~~~~~iY~~~l~r~~~~~~~ 450 (466)
T 3nd0_A 409 -DNYFVILPLL-VTCLV----ASVVAEALGGKPIYTVLLERTLAKQNR 450 (466)
T ss_dssp -CCCTTHHHHH-HHHHH----HHHHHTTSCCCCHHHHHHHHHHTTTTC
T ss_pred -CChHHHHHHH-HHHHH----HHHHHHHhCCCChHHHHHHHHhhhccC
Confidence 1244322222 12223 333332 3577899776666555443
Done!