BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008600
         (560 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
 pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
          Length = 287

 Score = 31.2 bits (69), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 23/32 (71%)

Query: 437 RIGNIGHLTRISNKLIQLGNNNSEIHAYLQEN 468
           +IG++GH+TRIS+  ++ G++    +  LQEN
Sbjct: 172 KIGDLGHVTRISSPQVEEGDSRFLANEVLQEN 203


>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
 pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
 pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
 pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
          Length = 287

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 23/32 (71%)

Query: 437 RIGNIGHLTRISNKLIQLGNNNSEIHAYLQEN 468
           +IG++GH+TRIS+  ++ G++    +  LQEN
Sbjct: 172 KIGDLGHVTRISSPQVEEGDSRFLANEVLQEN 203


>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
          Length = 285

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 23/32 (71%)

Query: 437 RIGNIGHLTRISNKLIQLGNNNSEIHAYLQEN 468
           +IG++GH+TRIS+  ++ G++    +  LQEN
Sbjct: 170 KIGDLGHVTRISSPQVEEGDSRFLANEVLQEN 201


>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
           With Inhibitor Pd0407824
          Length = 289

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 23/32 (71%)

Query: 437 RIGNIGHLTRISNKLIQLGNNNSEIHAYLQEN 468
           +IG++GH+TRIS+  ++ G++    +  LQEN
Sbjct: 174 KIGDLGHVTRISSPQVEEGDSRFLANEVLQEN 205


>pdb|2QTQ|A Chain A, Crystal Structure Of A Predicted Dna-Binding
           Transcriptional Regulator (Saro_1072) From
           Novosphingobium Aromaticivorans Dsm At 1.85 A Resolution
 pdb|2QTQ|B Chain B, Crystal Structure Of A Predicted Dna-Binding
           Transcriptional Regulator (Saro_1072) From
           Novosphingobium Aromaticivorans Dsm At 1.85 A Resolution
 pdb|2QTQ|C Chain C, Crystal Structure Of A Predicted Dna-Binding
           Transcriptional Regulator (Saro_1072) From
           Novosphingobium Aromaticivorans Dsm At 1.85 A Resolution
 pdb|2QTQ|D Chain D, Crystal Structure Of A Predicted Dna-Binding
           Transcriptional Regulator (Saro_1072) From
           Novosphingobium Aromaticivorans Dsm At 1.85 A Resolution
 pdb|2RHA|A Chain A, Crystal Structure Of A Predicted Dna-Binding
           Transcriptional Regulator (Saro_1072) From
           Novosphingobium Aromaticivorans Dsm At 2.10 A Resolution
          Length = 213

 Score = 29.3 bits (64), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 324 GKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPY 374
           G L+  L +    IV+ +  LL     + E +L RH  + + +D +++YPY
Sbjct: 62  GLLKALLDRDXENIVKSVDALLAKDDXSPEAKLRRH--ISKCIDTYYDYPY 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,813,388
Number of Sequences: 62578
Number of extensions: 549537
Number of successful extensions: 1121
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 5
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)