Query 008600
Match_columns 560
No_of_seqs 196 out of 378
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 14:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2073 SAP family cell cycle 100.0 2E-102 5E-107 869.1 34.8 551 1-556 1-584 (838)
2 PF04499 SAPS: SIT4 phosphatas 100.0 3.1E-77 6.8E-82 645.4 28.6 345 129-488 1-475 (475)
3 KOG2073 SAP family cell cycle 99.0 3.9E-09 8.4E-14 120.4 14.6 342 43-451 180-558 (838)
4 PF10508 Proteasom_PSMB: Prote 93.4 4 8.6E-05 45.7 17.8 216 107-378 43-265 (503)
5 PF04499 SAPS: SIT4 phosphatas 92.7 0.89 1.9E-05 50.4 11.2 131 86-224 5-150 (475)
6 PF05804 KAP: Kinesin-associat 82.2 84 0.0018 36.8 18.4 78 333-414 551-628 (708)
7 PF00514 Arm: Armadillo/beta-c 62.9 26 0.00056 24.6 5.4 36 185-221 5-40 (41)
8 KOG0946 ER-Golgi vesicle-tethe 62.8 1.8E+02 0.0038 34.4 14.4 55 92-149 112-166 (970)
9 PF06025 DUF913: Domain of Unk 56.0 2.9E+02 0.0064 29.8 15.7 128 96-226 100-236 (379)
10 KOG2023 Nuclear transport rece 48.0 2.4E+02 0.0051 32.8 12.1 142 302-481 129-290 (885)
11 KOG1566 Conserved protein Mo25 43.9 49 0.0011 34.7 5.8 116 13-146 127-255 (342)
12 PF04802 SMK-1: Component of I 43.9 1.3E+02 0.0028 29.4 8.5 134 83-224 34-178 (193)
13 PF05924 SAMP: SAMP Motif; In 43.1 12 0.00025 22.9 0.7 12 30-41 1-12 (20)
14 PF10508 Proteasom_PSMB: Prote 41.7 5.4E+02 0.012 28.7 26.0 287 97-449 114-420 (503)
15 PF04826 Arm_2: Armadillo-like 39.0 4.3E+02 0.0094 26.8 15.6 146 186-378 48-193 (254)
16 PF09759 Atx10homo_assoc: Spin 37.6 1.5E+02 0.0032 26.0 7.0 67 334-401 3-71 (102)
17 KOG3036 Protein involved in ce 33.3 81 0.0018 32.1 5.2 62 326-390 134-196 (293)
18 PF00790 VHS: VHS domain; Int 33.2 2.8E+02 0.0061 25.1 8.6 57 192-249 42-98 (140)
19 PF13929 mRNA_stabil: mRNA sta 33.0 2.6E+02 0.0057 29.1 9.1 55 121-176 115-179 (292)
20 PF08569 Mo25: Mo25-like; Int 32.1 5.8E+02 0.013 27.1 11.8 99 121-225 92-196 (335)
21 KOG2274 Predicted importin 9 [ 26.7 1.1E+03 0.024 28.5 13.5 38 194-231 661-698 (1005)
22 smart00185 ARM Armadillo/beta- 26.4 1.3E+02 0.0029 20.2 4.1 34 187-221 7-40 (41)
23 PF04388 Hamartin: Hamartin pr 23.4 7E+02 0.015 29.1 11.5 97 150-266 40-139 (668)
24 PF08569 Mo25: Mo25-like; Int 23.3 9.1E+02 0.02 25.6 13.3 126 90-223 153-284 (335)
25 PTZ00429 beta-adaptin; Provisi 23.0 1.3E+03 0.028 27.4 14.6 144 103-267 52-208 (746)
26 PF11841 DUF3361: Domain of un 22.7 3.8E+02 0.0083 25.4 7.5 41 185-226 95-135 (160)
27 KOG1062 Vesicle coat complex A 21.2 1.4E+03 0.03 27.3 12.8 51 182-232 92-143 (866)
28 cd00256 VATPase_H VATPase_H, r 21.0 5.4E+02 0.012 28.4 9.4 35 188-222 224-258 (429)
29 PF09440 eIF3_N: eIF3 subunit 20.3 1.4E+02 0.003 27.3 4.0 39 24-62 87-130 (133)
No 1
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.2e-102 Score=869.11 Aligned_cols=551 Identities=38% Similarity=0.621 Sum_probs=507.3
Q ss_pred CCccCCCCCCCChhhhhhcCCCCCHHHhhCCchhHHHHhhhhhhHHHHhhcHHHHHHHHHHhccCCCCchHhhhccccch
Q 008600 1 MFWRMAGLSTASPVETILDKENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPF 80 (560)
Q Consensus 1 MFW~~~g~~~~s~id~lL~k~~~tLeelLdeddllqE~k~~N~kLi~fL~~~~~l~~Li~yi~~~~~e~~~~~~~~kyp~ 80 (560)
|||++ +...++.++.+|+++.+||+++|||+|++||||.+|.||++||++|+++++|+.||+++|++|.++|++||||+
T Consensus 1 ~f~~~-~~~~~~~~e~~l~~~~~~l~elldeed~~~e~~~~n~~l~~~l~~~e~~~~l~~~I~~e~~~d~D~k~~f~~p~ 79 (838)
T KOG2073|consen 1 MFWDF-DLESSAEIELLLEKESDTLDELLDEEDILQECKLQNSKLLNFLKRPEVLEKLVEYIIEEPEEDADKKTRFKYPN 79 (838)
T ss_pred Ccccc-ccchhHHHHHhcccchhHHHHhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhcCCCcccchhhhhcccc
Confidence 89999 68888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHHhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc
Q 008600 81 VACEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI 160 (560)
Q Consensus 81 iasEILs~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~ 160 (560)
|+||||||++|+|.++|++|+++|.+|||||+.+.|+||++++||+|+++.|+.||+.+++.|+++++++|+.|++||++
T Consensus 80 i~~Eilt~dv~~I~~~l~~de~ll~~l~s~l~~~~pln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~~ 159 (838)
T KOG2073|consen 80 ISCEILTSDVWPISEALVEDESLLSLLYSILEHEPPLNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLKHIDI 159 (838)
T ss_pred HHHHHHhcCcHHHHHHHhccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcccccccccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhc-----CchhHHhhcCCh
Q 008600 161 TSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS-----APPALAAKISSP 235 (560)
Q Consensus 161 ~~I~dlLlrLI~~de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~-----~p~~L~~~L~s~ 235 (560)
++|||||+|+++||++.++. +++++||+++++|+||+++++|+.++++|+||+++||+|+++ ||++|+++|+||
T Consensus 160 stlMD~Llkli~~de~~~p~-~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~ 238 (838)
T KOG2073|consen 160 STLMDFLLKLISTDEPESPR-TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESP 238 (838)
T ss_pred cHHHHHHHHhccccCCCCch-HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCH
Confidence 99999999999999999764 999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccccchhhheeeccCccccCCch--h-hhhhccccCCCccccCccchHHHHhhHHHHHHhhcc
Q 008600 236 NFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGT--Y-YMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDV 312 (560)
Q Consensus 236 e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~Ll~~~~~~~~~--~-~~~~~~~~~~~~~~~~p~~~~~~l~~l~~l~~lL~~ 312 (560)
++|++|+++||++++++|++|+||+|+|+++.++|..... + ..+..+..+ ....+.+.++++|.+||++|+++|..
T Consensus 239 e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~-~d~~~~~~~l~~~~p~L~dF~~lL~~ 317 (838)
T KOG2073|consen 239 ETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSE-RDPIVLNELLGAMEPRLGDFVQLLLE 317 (838)
T ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccc-cCccchHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998876433 2 222211111 11233456788999999999999999
Q ss_pred CccccccccccCcccCCCchhhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-
Q 008600 313 SSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE- 391 (560)
Q Consensus 313 ~~~~~~l~tt~G~~~~PLG~~RLkIveLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~- 391 (560)
++..+.++||||+++||||++|||||||||+||||+++.+.+++...+++...+|+||+||||||||++|+.||..++.
T Consensus 318 ~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~ 397 (838)
T KOG2073|consen 318 PEKLDLLETTYGELEPPLGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSD 397 (838)
T ss_pred CccchhhhhhhhccCCCcchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhc
Confidence 9988899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------CCChHHHHHHhhhCchHHHHHHhhhcccccC--CCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHhcC---C
Q 008600 392 --------CKNAPLIEHLLHECNLVGKILEAEKNFTLKD--SNKPTVPAEGRLPPRIGNIGHLTRIS-NKLIQLGN---N 457 (560)
Q Consensus 392 --------~~~~~L~~~Lf~~~~li~~Il~~~~~~~~~~--~n~~~~~~~~~~~~r~GYmGhLt~IA-n~i~~~~~---~ 457 (560)
+.+..++.|++++|+++++|+++|+++.... ..+++..+.|+...|.|||||++|+| |.++++.. .
T Consensus 398 ~~~~~~~~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~~h~~R~~pn~~vq~~~~~~~ 477 (838)
T KOG2073|consen 398 ETNNDSNISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPIGHLTRIAPNVGDQLKIKLED 477 (838)
T ss_pred cccccccCCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCccceeeecCcchhhhccccccc
Confidence 7889999999999999999999998776542 23466777776456999999999999 99999754 7
Q ss_pred cHHHHHHHhc--cccHHHHHHHHhh------hhccchhhhhccCC-CCCccCCCCCCCCchhccCCCccHHHHhhchhhh
Q 008600 458 NSEIHAYLQE--NSEWNDWQINVLS------KRNTLENIYQWACG-RPTALHDRGRDSDDDDYQNRDYDVAALANNLSQA 528 (560)
Q Consensus 458 ~~~i~~~l~~--~~~W~~f~~~~L~------~~N~ve~~~~~~~G-~p~~~~~~~~~~dddd~~~~~~~~~~~~~~~~~~ 528 (560)
...|++.|+. +..|..|...++. ++|.++++|.|.|| +++..+|+.+..|++++.+|+|++.+.++++.+.
T Consensus 478 ~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~~~~~~id~~~~~~e~~~~d~~~~~~~~~~~i~~~ 557 (838)
T KOG2073|consen 478 TNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGYLTSNFIDLTRFNDEEEKADRDYDVMGHLDNIADH 557 (838)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhhccHHHHhhhccccchhhccccccchhhhhHhhhh
Confidence 7889999984 5688888777775 89999999999999 5999999999999998899999999999999998
Q ss_pred -hhhccccCCChhhhccCCCCCcccccee
Q 008600 529 -FRYGIYSNDDVDEAQGSLERDDEVRLVY 556 (560)
Q Consensus 529 -~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (560)
|+|.++.++...++.+..++ +..|||
T Consensus 558 ~F~~~~de~~~~~e~~~~~~~--~~q~~~ 584 (838)
T KOG2073|consen 558 NFSINIDENSPNAEDLEVEDR--LIQYFD 584 (838)
T ss_pred hccccccccCchhhhhhhhcc--cccccc
Confidence 99999999999999988888 666664
No 2
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=100.00 E-value=3.1e-77 Score=645.36 Aligned_cols=345 Identities=35% Similarity=0.567 Sum_probs=303.7
Q ss_pred HHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcchHHHHHHHHhcccccccccchhHHHHHhhhhHHHHHHHhcCCCCCHH
Q 008600 129 VICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPE 208 (560)
Q Consensus 129 ~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~~I~dlLlrLI~~de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e 208 (560)
+++|+.||+.+|++||+++|++|++|++||++|+|||+|+|||++|+++ .++++++||.+|+||++|+++|+|+++++
T Consensus 1 n~~Ll~~k~~e~l~Fik~~~~~v~~llkHI~~~~ImDlLLklIs~d~~~--~~~~ilewL~~q~LI~~Li~~L~p~~~~~ 78 (475)
T PF04499_consen 1 NECLLDRKTEEMLEFIKSQPNFVDNLLKHIDTPAIMDLLLKLISTDKPE--SPTGILEWLAEQNLIPRLIDLLSPSYSSD 78 (475)
T ss_pred CchhhhcCHHHHHHHHHhCccHHHHHHHhcCCcHHHHHHHHHHccCccc--chHHHHHHHHHhCHHHHHHHHhCCCCCHH
Confidence 4689999999999999999999999999999999999999999999975 57899999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhc------------CchhHHhhcCChHHHHHHHHHHhcCCCCcccccchhhheeeccCccccCCchh
Q 008600 209 VHANAAETLCSITRS------------APPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTY 276 (560)
Q Consensus 209 ~~~naae~L~~Ii~~------------~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~Ll~~~~~~~~~~ 276 (560)
+|+|||++||+||++ +|++|+++|+|+++|++|+++||++.+ .|+++||++|+|+||| +++++|
T Consensus 79 ~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~-~s~lvn~v~IlieLIR---knnsdy 154 (475)
T PF04499_consen 79 VQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG-GSSLVNGVSILIELIR---KNNSDY 154 (475)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHH---hccccc
Confidence 999999999999984 479999999999999999999997543 6999999999999995 678999
Q ss_pred hhh-hccccCCCccccCccchHHHH----hhHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHHHHhcCcHH
Q 008600 277 YMF-NRQLTHGSTVTVNPETVEGML----GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEA 351 (560)
Q Consensus 277 ~~~-~~~~~~~~~~~~~p~~~~~~l----~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveLia~LL~~~~~~ 351 (560)
+.. .......++....|.+++.++ +||++|+++|..++..++++||+|.+.||||++|||||||||+||||+|++
T Consensus 155 ~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~G~l~~PLG~~RlkI~ELiAeLLhcsNm~ 234 (475)
T PF04499_consen 155 DEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTFGVLIPPLGFERLKICELIAELLHCSNMS 234 (475)
T ss_pred chhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCCCCCCCCcchHHHHHHHHHHHHHhCCCcc
Confidence 853 111222344566787776655 799999999999999999999999999999999999999999999997653
Q ss_pred H-------------------------------------------------------------------------------
Q 008600 352 A------------------------------------------------------------------------------- 352 (560)
Q Consensus 352 i------------------------------------------------------------------------------- 352 (560)
+
T Consensus 235 LlN~~~~~~~~~~rd~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (475)
T PF04499_consen 235 LLNEPKGEEIVYERDGERERLLEQLQDALNDLEIDDEDIDDNSMDDESDSSEDSRELEVSNDSSDSEEEDESDEDSEDEE 314 (475)
T ss_pred ccCCccccchhcCcHHHHHHHHHHHHhhhhcccCCccccccccccccccCccccccccccccccccccccCCcccccccc
Confidence 1
Q ss_pred ------------------------HHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHh-----cCCChHHHHHHhh
Q 008600 353 ------------------------EKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL-----ECKNAPLIEHLLH 403 (560)
Q Consensus 353 ------------------------~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il-----~~~~~~L~~~Lf~ 403 (560)
..+|+++|++++|++|||+||||||||++||+||++|| .++++.|+.|||+
T Consensus 315 ~~~~~~~~~~~~~~~~~pvvGd~~k~~L~~~~il~~iLdLFfkypwNNFLH~~V~diIqqiln~~~~~~~n~~L~~~Lf~ 394 (475)
T PF04499_consen 315 EEESSDSEETEEKLRSNPVVGDYLKIELIELGILPTILDLFFKYPWNNFLHNVVEDIIQQILNGPMDESYNSFLVKHLFE 394 (475)
T ss_pred ccccccccccchhccCCCCcHHHHHHHHHHCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHhCCCCcccccHHHHHHHHh
Confidence 24688999999999999999999999999999999999 4678999999999
Q ss_pred hCchHHHHHHhhhcccccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCcHH--HHHHHh---ccccHHHHHHHH
Q 008600 404 ECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKLIQLGNNNSE--IHAYLQ---ENSEWNDWQINV 478 (560)
Q Consensus 404 ~~~li~~Il~~~~~~~~~~~n~~~~~~~~~~~~r~GYmGhLt~IAn~i~~~~~~~~~--i~~~l~---~~~~W~~f~~~~ 478 (560)
+|+|++||+++|+.+.. ++.+.++|+|||||||+|||+|+++++..+. +...++ .+++|.+|++++
T Consensus 395 ~~~l~~~Il~~~~~~~~---------~~~~~~~RlGYMGHLtlIAn~ivk~~~~~~~~li~~~i~~~~~~~~W~~fv~~~ 465 (475)
T PF04499_consen 395 DCDLTDRILEGWKENDE---------SQEKPGPRLGYMGHLTLIANEIVKFSEKYPEELISPDIQEELQNEEWEEFVEGV 465 (475)
T ss_pred hccHHHHHHHhhhhchh---------hcccCCCCcCchhHHHHHHHHHHHHHhcCcHHHHHHHHhhhhhhhhhHHHHHCh
Confidence 99999999999997643 2234479999999999999999999876655 555555 368999999999
Q ss_pred hhhhccchhh
Q 008600 479 LSKRNTLENI 488 (560)
Q Consensus 479 L~~~N~ve~~ 488 (560)
|+++|+.+++
T Consensus 466 L~et~~~~n~ 475 (475)
T PF04499_consen 466 LAETNEKENA 475 (475)
T ss_pred HHHHHhhcCC
Confidence 9999998764
No 3
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=3.9e-09 Score=120.40 Aligned_cols=342 Identities=17% Similarity=0.199 Sum_probs=174.3
Q ss_pred hhHHHHhhcHHHHHHHHHHhccCCCCchHhhhccccchhhhhhhcc-----chHHHHHHHhcCHHHHHHHH-hccCCCCC
Q 008600 43 GRLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFTC-----EVDIILKTLVEDEELMNLLF-SFLEPKDS 116 (560)
Q Consensus 43 ~kLi~fL~~~~~l~~Li~yi~~~~~e~~~~~~~~kyp~iasEILs~-----dv~~i~~~l~~~~~ll~~L~-sfL~~~~~ 116 (560)
..+++||..++.+.++++.+--.-+.+.-.+. ...-|+|-+- ...++..+|.. ++.+.+|+ -+|+...+
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna----~~~L~~iv~~s~~~~gPn~L~~qL~s-~e~ieqLl~~ml~~~~s 254 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNA----GQTLCAIVRLSRNQPGPNPLTKQLES-PETIEQLLKIMLEDGTS 254 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHH----HHHHHHHHhcccccCCCCHHHHhhcC-HHHHHHHHHHHccCCcc
Confidence 34444555556667777766543332222221 2222333332 34446666665 55555555 47888889
Q ss_pred CChhhhhhHHHHHHHHHhcCchhHH--HHHHhhh----------HHHHHHHHhhCcchHHHHHHHHhcccccccccchhH
Q 008600 117 HSTLLAGYFSKVVICLLLRKTVPLM--HYIKAHQ----------EIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTES 184 (560)
Q Consensus 117 ln~~lagyF~Ki~~~Ll~~k~~~~~--~fl~~~~----------~~v~~llkHi~~~~I~dlLlrLI~~de~~~~~~~~~ 184 (560)
++.+++|.+..|-...-.|.+.+.. ..+..|| ..+..|..| +.||+--|......
T Consensus 255 ~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~-----L~dF~~lL~~~~~~-------- 321 (838)
T KOG2073|consen 255 LSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPR-----LGDFVQLLLEPEKL-------- 321 (838)
T ss_pred hhhHHHHHHHHHHhcCcccccccccceeeeecCCccccCccchHHHHHHHHHH-----HHHHHHHhcCCccc--------
Confidence 9999999888877666666666653 2333332 233333333 34444333222221
Q ss_pred HHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCC--ccccc-chhhh
Q 008600 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRP--KSVLV-NSLSI 261 (560)
Q Consensus 185 ~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~--~s~lv-~~l~I 261 (560)
++++.-...|-|.-..++ ..+++++.++...+.-.+.+.+....+++++++..++..-. ....+ ++|..
T Consensus 322 -------~~l~tt~g~l~pPLG~~R-lki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~ 393 (838)
T KOG2073|consen 322 -------DLLETTYGELEPPLGFER-LKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVE 393 (838)
T ss_pred -------hhhhhhhhccCCCcchHH-HHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 123333334444333332 35788888888887777888888888887877776654321 01111 11111
Q ss_pred eeeccCccccCCchhhhhhccccCCCccccCccchHHHHhhHHHHHHhhccC---ccc--cccccccCcccCC---Cchh
Q 008600 262 CISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVS---SEE--SSLLTTYGKLQPP---LGKH 333 (560)
Q Consensus 262 li~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~l~~l~~lL~~~---~~~--~~l~tt~G~~~~P---LG~~ 333 (560)
+.+ +.. .+.+ . ...+-+.+.+.+....-.-.+|..- ... ..-.-+.|...+| =|..
T Consensus 394 ~~~--~~~-~~~~--~-----------~s~~~~~v~~~l~~c~l~~~~l~~~e~~e~~~~d~~~~~~~a~g~~~~~~g~~ 457 (838)
T KOG2073|consen 394 NLS--DET-NNDS--N-----------ISADNEIVDHLLQDCQLSDNILNQWEDSEEDEGDEDDPSDGAFGGKEYRNGPI 457 (838)
T ss_pred hhh--ccc-cccc--c-----------CCCchHHHHHHHHHhhhhhhhhhcccccchhccccccchhhhhcCCcccCCcc
Confidence 111 000 0000 0 0001112222222111000112110 000 0000011111111 1111
Q ss_pred hHHHHHHHHHHHhcCcHHH---HHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcC-----CChHHHHHHhhhC
Q 008600 334 RLKIVEFISVLLTVGSEAA---EKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC-----KNAPLIEHLLHEC 405 (560)
Q Consensus 334 RLkIveLia~LL~~~~~~i---~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~~-----~~~~L~~~Lf~~~ 405 (560)
.-+++.....+ ..++-..++++++|++|..++|||++|+++++|+++++++ ++..+.+
T Consensus 458 --------~h~~R~~pn~~vq~~~~~~~~~~i~~~L~~f~~~~w~~we~~v~~di~~~~~nn~v~~~y~~~~~~------ 523 (838)
T KOG2073|consen 458 --------GHLTRIAPNVGDQLKIKLEDTNIISTLLEGFPEEPWNNWEHNVLFDIEQQIFNNTVDNSYNDFLGY------ 523 (838)
T ss_pred --------ceeeecCcchhhhccccccchHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCccchhhhhhhhh------
Confidence 11122221111 1234567899999999999999999999999999999985 3444444
Q ss_pred chHHHHHHhhhcccccCCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008600 406 NLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISNKL 451 (560)
Q Consensus 406 ~li~~Il~~~~~~~~~~~n~~~~~~~~~~~~r~GYmGhLt~IAn~i 451 (560)
++..+++.++.++. +.+...|.|||||+++||+.+
T Consensus 524 -~~~~~id~~~~~~e----------~~~~d~~~~~~~~~~~i~~~~ 558 (838)
T KOG2073|consen 524 -LTSNFIDLTRFNDE----------EEKADRDYDVMGHLDNIADHN 558 (838)
T ss_pred -ccHHHHhhhccccc----------hhhccccccchhhhhHhhhhh
Confidence 55567777765442 112468999999999999986
No 4
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.38 E-value=4 Score=45.66 Aligned_cols=216 Identities=18% Similarity=0.250 Sum_probs=131.5
Q ss_pred HHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcchHHHHHHHHhcc-cccccccchhHH
Q 008600 107 LFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGITSIMEVLIRLIGA-DEHMYTNFTESM 185 (560)
Q Consensus 107 L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~~I~dlLlrLI~~-de~~~~~~~~~~ 185 (560)
+|+.|+.. ++-...+-++++..++......-+ +.....++...+.| ..+.|-.+.++.|.. .+. ..+..
T Consensus 43 lf~~L~~~---~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~----~~~~~ 112 (503)
T PF10508_consen 43 LFDCLNTS---NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARH----SEGAA 112 (503)
T ss_pred HHHHHhhc---ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC----CHHHH
Confidence 66666644 334556667888888886644433 66677788888888 557888886665433 222 24578
Q ss_pred HHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchhhheeec
Q 008600 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISL 265 (560)
Q Consensus 186 ~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~L 265 (560)
+++.+.++++.++..+. ..+.++-..|+.+|+.|.+..+ -...+.++..+..|-+.+-+.+ ..+-..+..++..+
T Consensus 113 ~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~--~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 113 QLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSS--DIVRCRVYELLVEI 187 (503)
T ss_pred HHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccC--HHHHHHHHHHHHHH
Confidence 89999999999999884 5667788889999999876532 2234444554555544443311 11122222222222
Q ss_pred cCccccCCchhhhhhccccCCCccccCccchHHHHh--hHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHH
Q 008600 266 LDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISV 343 (560)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~--~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveLia~ 343 (560)
- ..+|+....+.. -++.+++.|..+. -..|+.++|++.+
T Consensus 188 ~-----------------------~~S~~~~~~~~~sgll~~ll~eL~~dD----------------iLvqlnalell~~ 228 (503)
T PF10508_consen 188 A-----------------------SHSPEAAEAVVNSGLLDLLLKELDSDD----------------ILVQLNALELLSE 228 (503)
T ss_pred H-----------------------hcCHHHHHHHHhccHHHHHHHHhcCcc----------------HHHHHHHHHHHHH
Confidence 1 122333333322 3444444443311 0248889999999
Q ss_pred HHhcCcHHHHHHHHHhhhHHHHHHHHhhc---C-CCchh
Q 008600 344 LLTVGSEAAEKELIRHGAVRRILDLFFEY---P-YNNFL 378 (560)
Q Consensus 344 LL~~~~~~i~~~L~~~~~~~~lldlFf~Y---p-wNNfL 378 (560)
|-.+ +. -.+.|.+.|+++.+.++...- | ++.++
T Consensus 229 La~~-~~-g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~ 265 (503)
T PF10508_consen 229 LAET-PH-GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLL 265 (503)
T ss_pred HHcC-hh-HHHHHHhCCHHHHHHHHHhccccCCcccchh
Confidence 9883 23 347888999999999998776 4 54444
No 5
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=92.73 E-value=0.89 Score=50.40 Aligned_cols=131 Identities=12% Similarity=0.253 Sum_probs=99.2
Q ss_pred hccchHHHHHHHhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhc--CchhHHHHHHhhhHHHHHHHHhhC----
Q 008600 86 FTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLR--KTVPLMHYIKAHQEIMARLVDLIG---- 159 (560)
Q Consensus 86 Ls~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~--k~~~~~~fl~~~~~~v~~llkHi~---- 159 (560)
|.-....+.+.|-+.+.++++|+.-++. |..+-++.|+++ +.+ .+..+++++.. .+++.+|+..++
T Consensus 5 l~~k~~e~l~Fik~~~~~v~~llkHI~~-----~~ImDlLLklIs--~d~~~~~~~ilewL~~-q~LI~~Li~~L~p~~~ 76 (475)
T PF04499_consen 5 LDRKTEEMLEFIKSQPNFVDNLLKHIDT-----PAIMDLLLKLIS--TDKPESPTGILEWLAE-QNLIPRLIDLLSPSYS 76 (475)
T ss_pred hhcCHHHHHHHHHhCccHHHHHHHhcCC-----cHHHHHHHHHHc--cCcccchHHHHHHHHH-hCHHHHHHHHhCCCCC
Confidence 3444566778888888899988888864 458899999998 554 46689999988 589999999885
Q ss_pred ---cchHHHHHHHHhcccccc------cccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcC
Q 008600 160 ---ITSIMEVLIRLIGADEHM------YTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA 224 (560)
Q Consensus 160 ---~~~I~dlLlrLI~~de~~------~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~ 224 (560)
.++.+|+|.-||+..... ...+.....-|.++..|++|++.+-.+.......|+..++.++||..
T Consensus 77 ~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 77 SDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 347899999998774321 11235577788999999999998875333556678999999999854
No 6
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=82.23 E-value=84 Score=36.82 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhCchHHHHH
Q 008600 333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKIL 412 (560)
Q Consensus 333 ~RLkIveLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~~~~~~L~~~Lf~~~~li~~Il 412 (560)
.-|.+|-+++++- .++.....|.++|++..+++++-.+.=+.=+=.|+.-+..+.+-. ..-...+.++.+++..++
T Consensus 551 l~LE~Vi~~gtla--~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~yli 626 (708)
T PF05804_consen 551 LLLEVVILLGTLA--SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLI 626 (708)
T ss_pred HHHHHHHHHHHHH--CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHH
Confidence 4566666666554 255666788899999999999988876554444444444444321 223344445555555555
Q ss_pred Hh
Q 008600 413 EA 414 (560)
Q Consensus 413 ~~ 414 (560)
+-
T Consensus 627 dL 628 (708)
T PF05804_consen 627 DL 628 (708)
T ss_pred HH
Confidence 53
No 7
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=62.91 E-value=26 Score=24.61 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHH
Q 008600 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 221 (560)
Q Consensus 185 ~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii 221 (560)
.+-+-+.+.|+.|++.|. +.+++++.+|+-.|..|.
T Consensus 5 ~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 345678899999999998 889999999999998875
No 8
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.79 E-value=1.8e+02 Score=34.42 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=43.2
Q ss_pred HHHHHHhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhH
Q 008600 92 IILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQE 149 (560)
Q Consensus 92 ~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~ 149 (560)
.|.+.++.++++...|.++|+..+.+ .-=|=.+.+++||..||.++=.-|...|-
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~DF~---VR~~aIqLlsalls~r~~e~q~~ll~~P~ 166 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEFDFH---VRLYAIQLLSALLSCRPTELQDALLVSPM 166 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhhchh---hhhHHHHHHHHHHhcCCHHHHHHHHHCch
Confidence 38899999999999999999876532 23345788899999999887777777764
No 9
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=56.00 E-value=2.9e+02 Score=29.79 Aligned_cols=128 Identities=16% Similarity=0.266 Sum_probs=89.4
Q ss_pred HHhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhC---cchHHHHHHHHhc
Q 008600 96 TLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIG---ITSIMEVLIRLIG 172 (560)
Q Consensus 96 ~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~---~~~I~dlLlrLI~ 172 (560)
.++++..++.-|-.++++..--.+.+-++=.-|+..++..-|..+ ..|... ++++.+++.+. +++=.|+|..|..
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~-~~l~e~-Gl~~~~L~~i~~~~i~~s~e~l~~lP~ 177 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSF-SILQEA-GLIDAFLDAITAKGILPSSEVLTSLPN 177 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchh-HHHHHc-CChHHHHHHHhccCCCCcHHHHHHHHH
Confidence 344446777778888877776777788888888888888888643 344432 46677777765 6777888877766
Q ss_pred ccccccccchhHHHHHhhhhHHHHHHHhcCCC-C-----CHHHHHhHHHHHHHHHhcCch
Q 008600 173 ADEHMYTNFTESMQWIEDTNVLEMIVDKFSSS-D-----SPEVHANAAETLCSITRSAPP 226 (560)
Q Consensus 173 ~de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~-~-----~~e~~~naae~L~~Ii~~~p~ 226 (560)
+-....-|.. -++-+.+.+.++++++.|... + ..+.-.+++..+.+++|..|.
T Consensus 178 ~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 178 VLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred HHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 6443332333 356667779999999998542 2 226777888899999998763
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.02 E-value=2.4e+02 Score=32.84 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=72.7
Q ss_pred hHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHH
Q 008600 302 RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHH 381 (560)
Q Consensus 302 ~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~ 381 (560)
-|+.+..+|..+.. +..+-.+|.++ ||||=.|+.+.+.-. .+-. .-.+++.+. ||+.| +--+...
T Consensus 129 lLp~L~~~L~s~d~-n~~EgA~~AL~--------KIcEDsa~~lds~~~---~rpl-~~mipkfl~-f~~h~-spkiRs~ 193 (885)
T KOG2023|consen 129 LLPQLCELLDSPDY-NTCEGAFGALQ--------KICEDSAQFLDSDVL---TRPL-NIMIPKFLQ-FFKHP-SPKIRSH 193 (885)
T ss_pred HHHHHHHHhcCCcc-cccchhHHHHH--------HHHhhhHHHHhhhcc---cCch-HHhHHHHHH-HHhCC-ChhHHHH
Confidence 45566677764431 22222233333 899988888876321 0100 012333333 55556 5556666
Q ss_pred HHHHHHHHhcCCCh-------HHHHHHhhh------------CchHHHHHHhhhcccccCCCCCCCCCCCCCCCCcchHH
Q 008600 382 VENIILSCLECKNA-------PLIEHLLHE------------CNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIG 442 (560)
Q Consensus 382 V~~ii~~il~~~~~-------~L~~~Lf~~------------~~li~~Il~~~~~~~~~~~n~~~~~~~~~~~~r~GYmG 442 (560)
...||.+.+=..+. ..+.++|.- |+-.-.+++-.- ---|-
T Consensus 194 A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~---------------------dkl~p 252 (885)
T KOG2023|consen 194 AVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP---------------------DKLVP 252 (885)
T ss_pred HHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH---------------------Hhccc
Confidence 66777766533332 344445531 222223333210 12466
Q ss_pred HHHHHHHHHHHhcCC-cHHHHHHHhccccHHHHHHHHhhh
Q 008600 443 HLTRISNKLIQLGNN-NSEIHAYLQENSEWNDWQINVLSK 481 (560)
Q Consensus 443 hLt~IAn~i~~~~~~-~~~i~~~l~~~~~W~~f~~~~L~~ 481 (560)
||-.|-++..+.... ++. -.|+.-+-|-.+.+..+.+
T Consensus 253 hl~~IveyML~~tqd~dE~--VALEACEFwla~aeqpi~~ 290 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDEN--VALEACEFWLALAEQPICK 290 (885)
T ss_pred chHHHHHHHHHHccCcchh--HHHHHHHHHHHHhcCcCcH
Confidence 788888887776542 222 2344457899998877644
No 11
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=43.90 E-value=49 Score=34.72 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=71.5
Q ss_pred hhhhhhcC-CCCCHHHhhCCchhHHHHhhhhhhHHHHhhcHHHHHHHHHHhccCCCCc-hH-----hhhccccchhhhhh
Q 008600 13 PVETILDK-ENFTLEELLDEDDIIQECKALNGRLINFLRERAQVEQLIQYIVVEAPED-AE-----KRRTFKFPFVACEI 85 (560)
Q Consensus 13 ~id~lL~k-~~~tLeelLdeddllqE~k~~N~kLi~fL~~~~~l~~Li~yi~~~~~e~-~~-----~~~~~kyp~iasEI 85 (560)
.++.+++. ++ +.+-.|.--..+-||+. ..-|..++...+++++...|+-.+.=+- .+ +..--++..+++|+
T Consensus 127 ~~~~lv~~~~~-~~~iaL~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEf 204 (342)
T KOG1566|consen 127 ILDNLVKGYEN-TPEIALTCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEF 204 (342)
T ss_pred HHHHHHhhhcc-chHHHHHHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 46777774 34 78888999999999997 7789999999999999999997653211 11 11112345566666
Q ss_pred hccchHHH----HHHHhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCc--hhHHHHHHh
Q 008600 86 FTCEVDII----LKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKT--VPLMHYIKA 146 (560)
Q Consensus 86 Ls~dv~~i----~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~--~~~~~fl~~ 146 (560)
|+.....+ .+.|++++ |-+++=.+.|.++.++.-++ ..|-.|+.+
T Consensus 205 l~~n~d~ff~e~~~~Ll~s~----------------Nyvtkrqs~kllg~llldr~N~~~M~kYiss 255 (342)
T KOG1566|consen 205 LIRNYDNFFAEVYEKLLRSE----------------NYVTKRQSLKLLGELLLDRSNSAVMTKYISS 255 (342)
T ss_pred HHhChhhhHHHHHHHHhccc----------------ceehHHHHHHhHHHHHhCCCcHHHHHHHhcC
Confidence 66654322 33344433 44555556666665555433 244456653
No 12
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=43.87 E-value=1.3e+02 Score=29.41 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=75.1
Q ss_pred hhhhccchHHHHHHHhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHH-hhhHHHHHHHHhhCcc
Q 008600 83 CEIFTCEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIK-AHQEIMARLVDLIGIT 161 (560)
Q Consensus 83 sEILs~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~-~~~~~v~~llkHi~~~ 161 (560)
--++...-..|.+.++++ +....+...|+-++.....-|+| -..+.++. .+-+-+. .++.+...+=+.....
T Consensus 34 k~li~ln~~~i~e~llsd-e~i~~vvG~LEYDp~~~~~ka~h-----R~fL~~~~-~FkeVIpi~~~~l~~kIhqtyRlq 106 (193)
T PF04802_consen 34 KTLILLNDPEIFEILLSD-ENIMDVVGILEYDPEFPQPKANH-----REFLKEKA-KFKEVIPIPDPELLSKIHQTYRLQ 106 (193)
T ss_pred HHHHHcCCchHHHHHhch-HHHHHHhhhhccCCcccccccch-----HHHHHhCC-CCceeeecCCHHHHHHHHHHHhHH
Confidence 344445566788889884 55666778887765433322332 11122221 1111111 1233433333333444
Q ss_pred hHHHHHHHHhcccccc--------cccchhHHHHHhh-hhHHHHHHHhcC-CCCCHHHHHhHHHHHHHHHhcC
Q 008600 162 SIMEVLIRLIGADEHM--------YTNFTESMQWIED-TNVLEMIVDKFS-SSDSPEVHANAAETLCSITRSA 224 (560)
Q Consensus 162 ~I~dlLlrLI~~de~~--------~~~~~~~~~wl~~-~~li~~Ll~~l~-~~~~~e~~~naae~L~~Ii~~~ 224 (560)
-+-|+++. =..|++. ..|..++++++.+ .+++++|.+.+. ++.+.+....+.-+|.+++..+
T Consensus 107 YLkDvvL~-r~lDd~~~s~L~s~I~~n~~~Iv~~l~~d~~fL~~Lf~~l~~~~~~~~~r~d~v~fL~e~c~~a 178 (193)
T PF04802_consen 107 YLKDVVLP-RFLDDNTFSTLNSLIFFNQVEIVNMLQDDENFLEELFAILKDPSTSDERRRDGVKFLHEFCSLA 178 (193)
T ss_pred HHHHHHcc-cccccHHHHHHHHHHHHhHHHHHHHHHhCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44454443 1123321 1245678999976 469999999995 4557788888999999988754
No 13
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=43.13 E-value=12 Score=22.89 Aligned_cols=12 Identities=58% Similarity=1.016 Sum_probs=8.0
Q ss_pred CCchhHHHHhhh
Q 008600 30 DEDDIIQECKAL 41 (560)
Q Consensus 30 deddllqE~k~~ 41 (560)
||||+|+||-++
T Consensus 1 d~deiL~~CI~s 12 (20)
T PF05924_consen 1 DEDEILQECIGS 12 (20)
T ss_dssp --HHHHHHHHHC
T ss_pred CHHHHHHHHHHH
Confidence 567999999753
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=41.71 E-value=5.4e+02 Score=28.74 Aligned_cols=287 Identities=17% Similarity=0.211 Sum_probs=157.4
Q ss_pred HhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc------chHHHHHHHH
Q 008600 97 LVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI------TSIMEVLIRL 170 (560)
Q Consensus 97 l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~------~~I~dlLlrL 170 (560)
++.+.+++..+..-|..+ +.-.|.-=+|++..|...+.+ ++-+-. ++.+..|.+-+.. ..+.+++..+
T Consensus 114 ~~~~~~l~~~i~~~L~~~---d~~Va~~A~~~L~~l~~~~~~--~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDP---DLSVAKAAIKALKKLASHPEG--LEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEI 187 (503)
T ss_pred HhcCccHHHHHHHHHcCC---cHHHHHHHHHHHHHHhCCchh--HHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 344556666676666543 345677778888888875432 222211 1223333333322 2456666666
Q ss_pred hcccccccccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCC
Q 008600 171 IGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSR 250 (560)
Q Consensus 171 I~~de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~ 250 (560)
-... .+..+...+.++++.+++.+.. .|.-++.||.++|.++.. ++ .-...|.....+.+|.+.+.....
T Consensus 188 ~~~S-------~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~-~~-~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 188 ASHS-------PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE-TP-HGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HhcC-------HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc-Ch-hHHHHHHhCCHHHHHHHHHhcccc
Confidence 3332 2355677778999999999987 788889999999999988 33 346788888888888887765432
Q ss_pred CcccccchhhheeeccCccccCCchhhhhhccccCCCccccCccchHHHHhhHHHHHHhhccCccccccccccCcccCCC
Q 008600 251 PKSVLVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPL 330 (560)
Q Consensus 251 ~~s~lv~~l~Ili~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~l~~l~~lL~~~~~~~~l~tt~G~~~~PL 330 (560)
. .-.+++-+ ...+ ..+. ......|..+ +...++|...|..--. + + .+
T Consensus 258 d--p~~~~~~l-~g~~----------~f~g------~la~~~~~~v---~~~~p~~~~~l~~~~~------s-~--d~-- 304 (503)
T PF10508_consen 258 D--PRLSSLLL-PGRM----------KFFG------NLARVSPQEV---LELYPAFLERLFSMLE------S-Q--DP-- 304 (503)
T ss_pred C--Ccccchhh-hhHH----------HHHH------HHHhcChHHH---HHHHHHHHHHHHHHhC------C-C--Ch--
Confidence 1 10011000 0011 0110 0011123222 2233444432220000 0 0 00
Q ss_pred chhhHHHHHHHHHHHhcCcHHHHHHH-HH-hhhHHHHHHHHhhcCCCch--hHHHHHHHHHHHhcCCCh-------HHHH
Q 008600 331 GKHRLKIVEFISVLLTVGSEAAEKEL-IR-HGAVRRILDLFFEYPYNNF--LHHHVENIILSCLECKNA-------PLIE 399 (560)
Q Consensus 331 G~~RLkIveLia~LL~~~~~~i~~~L-~~-~~~~~~lldlFf~YpwNNf--LH~~V~~ii~~il~~~~~-------~L~~ 399 (560)
..|.-.++-++.+= +..+.. +.| .. .+.+..++..++.+-.+-- ++....+++..++....+ .+..
T Consensus 305 -~~~~~A~dtlg~ig-st~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~ 381 (503)
T PF10508_consen 305 -TIREVAFDTLGQIG-STVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITE 381 (503)
T ss_pred -hHHHHHHHHHHHHh-CCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 12444566666553 333332 233 33 4588999999999998875 788888889999865433 3344
Q ss_pred HHhh---hCchHHHHHHhhhcccccCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 008600 400 HLLH---ECNLVGKILEAEKNFTLKDSNKPTVPAEGRLPPRIGNIGHLTRISN 449 (560)
Q Consensus 400 ~Lf~---~~~li~~Il~~~~~~~~~~~n~~~~~~~~~~~~r~GYmGhLt~IAn 449 (560)
..|. +......++..-+ ++++ -.|.+-++.|+-+|.
T Consensus 382 ~w~~~~~~~~~~~~l~~~~~-----------qPF~---elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 382 SWYESLSGSPLSNLLMSLLK-----------QPFP---ELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHhcCCchHHHHHHHhc-----------CCch---HHHHHHHHHHHHHhc
Confidence 4443 2222224444322 1232 278888888887775
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=39.03 E-value=4.3e+02 Score=26.82 Aligned_cols=146 Identities=18% Similarity=0.268 Sum_probs=81.9
Q ss_pred HHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchhhheeec
Q 008600 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISL 265 (560)
Q Consensus 186 ~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~L 265 (560)
+...+-+.++.+.+.++. .++.++..|-..|..+-...++.- ++ +..+.++.+.++...-...+-..|+..+..|
T Consensus 48 ~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~en~~--~I--k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 48 DIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDENQE--QI--KMYIPQVCEETVSSPLNSEVQLAGLRLLTNL 122 (254)
T ss_pred HHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChhhHH--HH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHcc
Confidence 445566777777766655 456666555444444322222211 11 3455666665544321112234555555544
Q ss_pred cCccccCCchhhhhhccccCCCccccCccchHHHHhhHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHHHH
Q 008600 266 LDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLL 345 (560)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveLia~LL 345 (560)
-- .+.+-.-+..++++|+.+|.. |. |.+|.++++++.-|
T Consensus 123 tv------------------------~~~~~~~l~~~i~~ll~LL~~-----------G~-----~~~k~~vLk~L~nL- 161 (254)
T PF04826_consen 123 TV------------------------TNDYHHMLANYIPDLLSLLSS-----------GS-----EKTKVQVLKVLVNL- 161 (254)
T ss_pred CC------------------------CcchhhhHHhhHHHHHHHHHc-----------CC-----hHHHHHHHHHHHHh-
Confidence 11 011111234578888888863 21 24678888876655
Q ss_pred hcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchh
Q 008600 346 TVGSEAAEKELIRHGAVRRILDLFFEYPYNNFL 378 (560)
Q Consensus 346 ~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfL 378 (560)
+.++..-++|+..+++..++.||-+-.-+..|
T Consensus 162 -S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l 193 (254)
T PF04826_consen 162 -SENPDMTRELLSAQVLSSFLSLFNSSESKENL 193 (254)
T ss_pred -ccCHHHHHHHHhccchhHHHHHHccCCccHHH
Confidence 33567778999999999999999887555544
No 16
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=37.58 E-value=1.5e+02 Score=25.99 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCC--ChHHHHHH
Q 008600 334 RLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECK--NAPLIEHL 401 (560)
Q Consensus 334 RLkIveLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~~~--~~~L~~~L 401 (560)
|.-++++|+.|.+- ++.+...+.+.|-++.+|+..--=++|-|+-....=+|...++++ |..++..|
T Consensus 3 K~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 66789999999975 577888899999999999998777888888888888888888763 34455544
No 17
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=33.25 E-value=81 Score=32.12 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=49.1
Q ss_pred ccCCCchhhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchh-HHHHHHHHHHHh
Q 008600 326 LQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFL-HHHVENIILSCL 390 (560)
Q Consensus 326 ~~~PLG~~RLkIveLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfL-H~~V~~ii~~il 390 (560)
...||-.-||.-.-.|++|++.++..+..-|..+++++.|+...- .-+=+ ..+...|++.|+
T Consensus 134 ~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime---~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 134 KSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME---SGSELSKTVATFILQKIL 196 (293)
T ss_pred cCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh---cccHHHHHHHHHHHHHHh
Confidence 466999999999999999999999999999999999999997763 23334 334445566665
No 18
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.16 E-value=2.8e+02 Score=25.13 Aligned_cols=57 Identities=14% Similarity=0.301 Sum_probs=45.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCC
Q 008600 192 NVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENS 249 (560)
Q Consensus 192 ~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~ 249 (560)
+.+..|-.+|.. .++.++..|-.+|-.++..+..++..++.+.++++.|.+.+-...
T Consensus 42 ea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 42 EAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC
Confidence 345555555654 788999999999999999888899999999999999888766543
No 19
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.99 E-value=2.6e+02 Score=29.07 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhC----------cchHHHHHHHHhccccc
Q 008600 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIG----------ITSIMEVLIRLIGADEH 176 (560)
Q Consensus 121 lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~----------~~~I~dlLlrLI~~de~ 176 (560)
+.+|+-=++.++...+...+++.++.+. .|-..|+|+. .+.|+.+|++-+..++.
T Consensus 115 li~FL~~~i~~~~~~k~~~Y~~LVk~N~-~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~ 179 (292)
T PF13929_consen 115 LISFLKLVIINLSSNKSFNYWDLVKRNK-IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDEN 179 (292)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhhH-HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccc
Confidence 4555555566666666556888887764 5555555554 46789999998888554
No 20
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=32.10 E-value=5.8e+02 Score=27.07 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=62.2
Q ss_pred hhhhHHHHHHHHHhcCch----hHHHHHHhh-hHHHHHHHHhhCcchHHHHHHHHhc-ccccccccchhHHHHHhhhhHH
Q 008600 121 LAGYFSKVVICLLLRKTV----PLMHYIKAH-QEIMARLVDLIGITSIMEVLIRLIG-ADEHMYTNFTESMQWIEDTNVL 194 (560)
Q Consensus 121 lagyF~Ki~~~Ll~~k~~----~~~~fl~~~-~~~v~~llkHi~~~~I~dlLlrLI~-~de~~~~~~~~~~~wl~~~~li 194 (560)
.-.-.+-|..+++.++.+ ...+|+..+ |++++.|++.-+.+.|+=.-=.++. |-+. .....++-+...+
T Consensus 92 srKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~-----e~l~~~iL~~~~f 166 (335)
T PF08569_consen 92 SRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH-----ESLAKIILYSECF 166 (335)
T ss_dssp HHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS-----HHHHHHHHTSGGG
T ss_pred ccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh-----HHHHHHHhCcHHH
Confidence 444556677888887644 368999999 9999999998888776533222211 1221 1233344334455
Q ss_pred HHHHHhcCCCCCHHHHHhHHHHHHHHHhcCc
Q 008600 195 EMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (560)
Q Consensus 195 ~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p 225 (560)
.++.+.+ ...+.|+.+-|...++++.+..+
T Consensus 167 ~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk 196 (335)
T PF08569_consen 167 WKFFKYV-QLPNFDIASDAFSTFKELLTRHK 196 (335)
T ss_dssp GGHHHHT-TSSSHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHh-cCCccHhHHHHHHHHHHHHhccH
Confidence 5566543 35778999999999999987654
No 21
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=26.73 E-value=1.1e+03 Score=28.50 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhh
Q 008600 194 LEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAK 231 (560)
Q Consensus 194 i~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~ 231 (560)
.+.++++.--+.+.+.-.|++|.|.+.|..++.++...
T Consensus 661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~ 698 (1005)
T KOG2274|consen 661 FPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTW 698 (1005)
T ss_pred hHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhh
Confidence 45555555446677778899999999999987665544
No 22
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=26.41 E-value=1.3e+02 Score=20.17 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=26.9
Q ss_pred HHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHH
Q 008600 187 WIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSIT 221 (560)
Q Consensus 187 wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii 221 (560)
-+.+.+.++.|+..+. +.+++++.+++..|..|.
T Consensus 7 ~i~~~g~i~~L~~ll~-~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 7 AVVDAGGLPALVELLK-SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHc
Confidence 3456778999998887 567899999999888764
No 23
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.45 E-value=7e+02 Score=29.13 Aligned_cols=97 Identities=25% Similarity=0.362 Sum_probs=57.6
Q ss_pred HHHHHHHhh---CcchHHHHHHHHhcccccccccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCch
Q 008600 150 IMARLVDLI---GITSIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP 226 (560)
Q Consensus 150 ~v~~llkHi---~~~~I~dlLlrLI~~de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~ 226 (560)
+|..|+... +...++++|..+ .+|. +..|..+|=+.|... ..-.-+--+||.+++..|.
T Consensus 40 l~~~l~~y~~~t~s~~~~~il~~~---~~P~------------~K~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~ 101 (668)
T PF04388_consen 40 LVNGLVDYYLSTNSQRALEILVGV---QEPH------------DKHLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPP 101 (668)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHhc---CCcc------------HHHHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCc
Confidence 455555432 556777776654 4431 224555555555432 2222356689999998875
Q ss_pred hHHhhcCChHHHHHHHHHHhcCCCCcccccchhhheeecc
Q 008600 227 ALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLL 266 (560)
Q Consensus 227 ~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~Ll 266 (560)
-+ -++....-+..|++.+..+. ...++..++.+++.||
T Consensus 102 ~l-~~i~~t~Lf~~LLk~L~~D~-~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 102 WL-YKILQTPLFKSLLKCLQFDT-SITVVSSALLVLIMLL 139 (668)
T ss_pred hH-HHHhcChhHHHHHHHHhhcc-cHHHHHHHHHHHHHHh
Confidence 44 45556666677777665543 2356667788888777
No 24
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=23.30 E-value=9.1e+02 Score=25.61 Aligned_cols=126 Identities=13% Similarity=0.229 Sum_probs=75.7
Q ss_pred hHHHHHHHhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhh-hHHHHHHHHhhC--cchHHHH
Q 008600 90 VDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAH-QEIMARLVDLIG--ITSIMEV 166 (560)
Q Consensus 90 v~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~-~~~v~~llkHi~--~~~I~dl 166 (560)
.+.+...+++++ .+.++|.+++.+. =-.|+---.++..|+.+...-.-+|+..+ ..|+..+-+.+. +...---
T Consensus 153 ~e~l~~~iL~~~-~f~~ff~~~~~~~---Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 153 HESLAKIILYSE-CFWKFFKYVQLPN---FDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp SHHHHHHHHTSG-GGGGHHHHTTSSS---HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred hHHHHHHHhCcH-HHHHHHHHhcCCc---cHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 344444444433 3344666665432 23555556788888888887778888765 446665555443 3333333
Q ss_pred HHHHhcc---cccccccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhc
Q 008600 167 LIRLIGA---DEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS 223 (560)
Q Consensus 167 LlrLI~~---de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~ 223 (560)
-+||++. |.. |..-+..|..+.+-+.-+...|. +.+..++.-|-.+++=.+..
T Consensus 229 slkLL~ellldr~---n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 229 SLKLLGELLLDRS---NFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHSGG---GHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHchh---HHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHhC
Confidence 4455543 333 45556789988888877777665 56677888888888887765
No 25
>PTZ00429 beta-adaptin; Provisional
Probab=23.05 E-value=1.3e+03 Score=27.36 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=81.0
Q ss_pred HHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCch-------hHHHHHHhhhHH----HHHHHHhh--CcchHHHHHHH
Q 008600 103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTV-------PLMHYIKAHQEI----MARLVDLI--GITSIMEVLIR 169 (560)
Q Consensus 103 ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~-------~~~~fl~~~~~~----v~~llkHi--~~~~I~dlLlr 169 (560)
.+.++....-... -.+.+|.-|+..+-..+.. -+.+|.+.+|+. +..|.|-+ .++.|-=+=+|
T Consensus 52 alKkvIa~mt~G~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALR 127 (746)
T PTZ00429 52 AVKRIIANMTMGR----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVR 127 (746)
T ss_pred HHHHHHHHHHCCC----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555555443222 2456777777644322221 123455556663 45555555 34566666677
Q ss_pred HhcccccccccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCC
Q 008600 170 LIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENS 249 (560)
Q Consensus 170 LI~~de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~ 249 (560)
.+++-..+ ++++.+ +.-+...+ ...++.+-.+|+-.+..|.+..|+ .+....++.+|.+ ++.++
T Consensus 128 tLs~Ir~~-----~i~e~l-----~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pe----lv~~~~~~~~L~~-LL~D~ 191 (746)
T PTZ00429 128 TMMCIRVS-----SVLEYT-----LEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQ----LFYQQDFKKDLVE-LLNDN 191 (746)
T ss_pred HHHcCCcH-----HHHHHH-----HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCcc----cccccchHHHHHH-HhcCC
Confidence 66665432 122222 22222223 467789999999988889888774 1223445666666 56654
Q ss_pred CCcccccchhhheeeccC
Q 008600 250 RPKSVLVNSLSICISLLD 267 (560)
Q Consensus 250 ~~~s~lv~~l~Ili~Ll~ 267 (560)
. .++..|++.++.++-+
T Consensus 192 d-p~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 192 N-PVVASNAAAIVCEVND 208 (746)
T ss_pred C-ccHHHHHHHHHHHHHH
Confidence 3 3788888888887743
No 26
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=22.69 E-value=3.8e+02 Score=25.38 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=32.4
Q ss_pred HHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCch
Q 008600 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPP 226 (560)
Q Consensus 185 ~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~ 226 (560)
-++..++=-+++|+..|.. .+++++.||--++.++...+|+
T Consensus 95 y~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 95 YQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCh
Confidence 3455555567788888865 7889999999999999988764
No 27
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=1.4e+03 Score=27.34 Aligned_cols=51 Identities=12% Similarity=0.330 Sum_probs=30.7
Q ss_pred hhHHHHHhh-hhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhc
Q 008600 182 TESMQWIED-TNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKI 232 (560)
Q Consensus 182 ~~~~~wl~~-~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L 232 (560)
-+++=+|.| |+++--+.+.+...-....+.-++--||++-++++.++.|.|
T Consensus 92 LaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Emardl 143 (866)
T KOG1062|consen 92 LAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDL 143 (866)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHh
Confidence 344445543 677777777776544444444567778887777666555544
No 28
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=21.01 E-value=5.4e+02 Score=28.37 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=18.6
Q ss_pred HhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHh
Q 008600 188 IEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 222 (560)
Q Consensus 188 l~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~ 222 (560)
+.+.++|+.+++.+..+.-+-+..=+--+|..++.
T Consensus 224 ~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 224 LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 34456677776666554444444444445555544
No 29
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=20.34 E-value=1.4e+02 Score=27.35 Aligned_cols=39 Identities=18% Similarity=0.475 Sum_probs=29.5
Q ss_pred CHHHhhCCchhHHHHhhhhhhHHHHhhc-----HHHHHHHHHHh
Q 008600 24 TLEELLDEDDIIQECKALNGRLINFLRE-----RAQVEQLIQYI 62 (560)
Q Consensus 24 tLeelLdeddllqE~k~~N~kLi~fL~~-----~~~l~~Li~yi 62 (560)
.+-+++.++++++++++-....++||.+ +++|..|-+|.
T Consensus 87 ~v~~~~~~~ev~~~l~~dk~~nl~~L~~~h~it~e~id~LY~~a 130 (133)
T PF09440_consen 87 PVLELLEDPEVVKNLRSDKKQNLEYLEENHGITPEMIDALYKYA 130 (133)
T ss_pred HHHHHHcCHHHHHHHHccHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 4556788888999999866778889854 57777777764
Done!