Query 008600
Match_columns 560
No_of_seqs 196 out of 378
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:19:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b8j_A Importin subunit alpha- 93.8 6.1 0.00021 41.9 21.8 236 103-391 203-443 (528)
2 4hxt_A De novo protein OR329; 91.9 7.5 0.00025 36.1 17.1 215 104-370 4-222 (252)
3 1wa5_B Importin alpha subunit; 85.7 25 0.00085 37.2 17.6 233 103-390 216-456 (530)
4 4b8j_A Importin subunit alpha- 81.0 58 0.002 34.1 22.4 259 102-414 117-379 (528)
5 4hxt_A De novo protein OR329; 75.1 44 0.0015 30.6 13.3 113 102-223 86-200 (252)
6 4db8_A Armadillo-repeat protei 66.4 81 0.0028 29.0 14.3 197 126-371 33-233 (252)
7 1xqr_A HSPBP1 protein; armadil 64.2 49 0.0017 32.7 11.4 159 189-392 78-239 (296)
8 3grl_A General vesicular trans 63.7 1.8E+02 0.0062 32.2 17.1 205 146-390 119-341 (651)
9 1xqr_A HSPBP1 protein; armadil 63.3 29 0.001 34.4 9.6 134 82-225 102-241 (296)
10 2jdq_A Importin alpha-1 subuni 60.9 1.4E+02 0.0048 29.9 19.3 161 185-390 227-389 (450)
11 4db6_A Armadillo repeat protei 60.8 80 0.0027 28.1 11.6 115 102-225 54-170 (210)
12 2jdq_A Importin alpha-1 subuni 58.4 1.5E+02 0.0053 29.6 21.3 263 98-415 60-327 (450)
13 3tpo_A Importin subunit alpha- 56.5 67 0.0023 34.0 11.7 39 185-223 112-150 (529)
14 4db6_A Armadillo repeat protei 53.9 1.2E+02 0.0041 26.9 13.5 158 44-221 45-208 (210)
15 1wa5_B Importin alpha subunit; 53.2 2.2E+02 0.0074 29.7 17.9 39 186-225 335-373 (530)
16 3tpo_A Importin subunit alpha- 44.1 3E+02 0.01 28.8 19.6 180 185-411 286-473 (529)
17 3grl_A General vesicular trans 42.4 1.7E+02 0.0058 32.4 12.0 125 93-224 113-243 (651)
18 3ul1_B Importin subunit alpha- 39.1 3.5E+02 0.012 28.1 17.7 178 185-411 267-454 (510)
19 4db8_A Armadillo-repeat protei 36.1 2.5E+02 0.0085 25.5 11.1 114 102-224 54-169 (252)
20 3l6x_A Catenin delta-1; cateni 32.8 2.3E+02 0.0078 30.9 11.2 154 184-371 300-456 (584)
21 2fv2_A RCD1 required for cell 27.4 54 0.0019 32.2 4.4 62 327-391 112-174 (268)
22 3ul1_B Importin subunit alpha- 25.2 1.2E+02 0.004 32.0 7.1 37 186-222 94-130 (510)
23 2qk2_A LP04448P; mini spindles 23.0 4.3E+02 0.015 24.0 10.9 98 121-222 92-205 (242)
24 4fdd_A Transportin-1; heat rep 22.8 3.9E+02 0.013 29.7 11.2 51 192-245 670-720 (852)
25 1upk_A MO25 protein; transfera 21.5 6.4E+02 0.022 25.5 11.9 112 105-223 167-284 (341)
26 3nmw_A APC variant protein; AR 20.5 6.4E+02 0.022 25.1 13.6 206 120-369 99-314 (354)
No 1
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.80 E-value=6.1 Score=41.86 Aligned_cols=236 Identities=16% Similarity=0.148 Sum_probs=130.9
Q ss_pred HHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc--chHHHHHHHHhcc-cccccc
Q 008600 103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGA-DEHMYT 179 (560)
Q Consensus 103 ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~--~~I~dlLlrLI~~-de~~~~ 179 (560)
.+..|...|... -++.....-+.++..|...++..-.... .+.+..|++.+.. +.+..-.+..+.. -..
T Consensus 203 ~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~---~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--- 274 (528)
T 4b8j_A 203 ALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQPSFEQT---RPALPALARLIHSNDEEVLTDACWALSYLSDG--- 274 (528)
T ss_dssp CHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCCCHHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---
T ss_pred cHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCCcHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---
Confidence 456677777433 2455556666777777766543332222 4456666655533 2333322222221 111
Q ss_pred cchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchh
Q 008600 180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSL 259 (560)
Q Consensus 180 ~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l 259 (560)
.....+.+.+.++++.|+..|... ++.+...|+..|..|....+ .....+.....+..|+..+-.... ..+-..++
T Consensus 275 -~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~A~ 350 (528)
T 4b8j_A 275 -TNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLK-KSIKKEAC 350 (528)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCC-HHHHHHHH
T ss_pred -CHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCc-HHHHHHHH
Confidence 122344566778999999988654 57888999999998876433 333334445555555554433211 12222222
Q ss_pred hheeeccCccccCCchhhhhhccccCCCccccCccchHHHH--hhHHHHHHhhccCccccccccccCcccCCCchhhHHH
Q 008600 260 SICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKI 337 (560)
Q Consensus 260 ~Ili~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l--~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkI 337 (560)
.++-.+.. ..++....++ .-++.++++|..+. ...|..+
T Consensus 351 ~~L~nl~~-----------------------~~~~~~~~~~~~~~i~~L~~lL~~~~----------------~~v~~~a 391 (528)
T 4b8j_A 351 WTISNITA-----------------------GNKDQIQAVINAGIIGPLVNLLQTAE----------------FDIKKEA 391 (528)
T ss_dssp HHHHHHHT-----------------------SCHHHHHHHHHTTCHHHHHHHHHHSC----------------HHHHHHH
T ss_pred HHHHHHHC-----------------------CCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHHH
Confidence 22222211 0122222222 23455666664321 1357788
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Q 008600 338 VEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE 391 (560)
Q Consensus 338 veLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~ 391 (560)
+..+..|...+++.....+.+.|+++.++++.-. -+.-+...+..++..++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC--PDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHH
Confidence 9999999888777777889999999999998765 344555556666666653
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=91.89 E-value=7.5 Score=36.06 Aligned_cols=215 Identities=16% Similarity=0.186 Sum_probs=117.5
Q ss_pred HHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcc--hHHHHHHHHhcccccccccc
Q 008600 104 MNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYTNF 181 (560)
Q Consensus 104 l~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~--~I~dlLlrLI~~de~~~~~~ 181 (560)
+..|..+|..+. +-..-.-++++..+....+. ....+.. .+.+..|++.+..+ .+..-....+..--.. .
T Consensus 4 i~~L~~~L~~~~---~~~~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~ 75 (252)
T 4hxt_A 4 VEKLVKLLTSTD---SETQKEAARDLAEIASGPAS-AIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASG---P 75 (252)
T ss_dssp HHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCHH-HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcH-HHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC---C
Confidence 456677776654 44444556677777766653 3333322 35677777776543 3333322222221110 1
Q ss_pred hhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchhhh
Q 008600 182 TESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSI 261 (560)
Q Consensus 182 ~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~I 261 (560)
.+..+.+.+.+.++.|+..+. +.++++..+|+..|..+....+. ....+.....+..|++.+-.+. ..+...++..
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~ 151 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARA 151 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHH
Confidence 123345567789999999887 46789999999999999764432 2222333344555554332211 1222222332
Q ss_pred eeeccCccccCCchhhhhhccccCCCccccCccchHHHHh--hHHHHHHhhccCccccccccccCcccCCCchhhHHHHH
Q 008600 262 CISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVE 339 (560)
Q Consensus 262 li~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~--~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIve 339 (560)
+-.+... .+.....+.. -++.++++|..+. ...|..++.
T Consensus 152 L~~l~~~-----------------------~~~~~~~~~~~~~i~~L~~ll~~~~----------------~~v~~~a~~ 192 (252)
T 4hxt_A 152 LANIASG-----------------------PDEAIKAIVDAGGVEVLVKLLTSTD----------------SEVQKEAAR 192 (252)
T ss_dssp HHHHTTS-----------------------CHHHHHHHHHTTHHHHHHHHTTCSC----------------HHHHHHHHH
T ss_pred HHHHHcC-----------------------CHHHHHHHHHCcCHHHHHHHHCCCC----------------HHHHHHHHH
Confidence 2222210 1111122221 3445666665211 256778888
Q ss_pred HHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Q 008600 340 FISVLLTVGSEAAEKELIRHGAVRRILDLFF 370 (560)
Q Consensus 340 Lia~LL~~~~~~i~~~L~~~~~~~~lldlFf 370 (560)
.+..|.. +++...+.+.+.|+++.++++.-
T Consensus 193 ~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 193 ALANIAS-GPTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp HHHHHTT-SBHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHc-CCHHHHHHHHHCCCHHHHHHHHC
Confidence 8888876 45666778889999888888764
No 3
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=85.71 E-value=25 Score=37.16 Aligned_cols=233 Identities=15% Similarity=0.151 Sum_probs=115.7
Q ss_pred HHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcC-chhHHHHHHhhhHHHHHHHHhhCcc--hHHHHHHHHhcc-ccccc
Q 008600 103 LMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRK-TVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGA-DEHMY 178 (560)
Q Consensus 103 ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k-~~~~~~fl~~~~~~v~~llkHi~~~--~I~dlLlrLI~~-de~~~ 178 (560)
.+..|..++.. .++-....-+.++..|.... +..-.... .+++..|++.+..+ .+..-.+..+.. -..
T Consensus 216 ~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~-- 287 (530)
T 1wa5_B 216 AMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPDWSVV---SQALPTLAKLIYSMDTETLVDACWAISYLSDG-- 287 (530)
T ss_dssp CHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSCCCHHHH---GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--
T ss_pred cHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCCCcHHHH---HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--
Confidence 45566666654 23334444566666666543 22111111 34555555555332 222222222211 111
Q ss_pred ccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccch
Q 008600 179 TNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNS 258 (560)
Q Consensus 179 ~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~ 258 (560)
.....+.+.+.++++.|+..+. +.++.+..+|+..|..|....+. ....+.....+..|+..+-. .. ..+-..+
T Consensus 288 --~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~-~~-~~vr~~A 361 (530)
T 1wa5_B 288 --PQEAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAVGNIVTGNDL-QTQVVINAGVLPALRLLLSS-PK-ENIKKEA 361 (530)
T ss_dssp --CHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTC-SC-HHHHHHH
T ss_pred --CHHHHHHHHhcCcHHHHHHHHC-CCChhhHHHHHHHHHHHHcCCHH-HHHHHHHcchHHHHHHHHcC-CC-HHHHHHH
Confidence 1123445556789999999886 45688888999999888654332 22222222233333332211 11 0111111
Q ss_pred hhheeeccCccccCCchhhhhhccccCCCccccCccchHHHHh--hHHHHHHhhccCccccccccccCcccCCCchhhHH
Q 008600 259 LSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLK 336 (560)
Q Consensus 259 l~Ili~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~--~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLk 336 (560)
+..+-.+. ...++....++. -++.++.+|..+. -..|..
T Consensus 362 ~~aL~~l~-----------------------~~~~~~~~~~~~~~~l~~L~~lL~~~~----------------~~v~~~ 402 (530)
T 1wa5_B 362 CWTISNIT-----------------------AGNTEQIQAVIDANLIPPLVKLLEVAE----------------YKTKKE 402 (530)
T ss_dssp HHHHHHHT-----------------------TSCHHHHHHHHHTTCHHHHHHHHHHSC----------------HHHHHH
T ss_pred HHHHHHHH-----------------------cCCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHH
Confidence 11111111 011222222321 3445556664211 135778
Q ss_pred HHHHHHHHHhcCcH--HHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Q 008600 337 IVEFISVLLTVGSE--AAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL 390 (560)
Q Consensus 337 IveLia~LL~~~~~--~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il 390 (560)
++..+..|...+.+ ...+.+++.|+++.++++.-. + +.-....+...+..++
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~-~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-A-DNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-C-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-C-CHHHHHHHHHHHHHHH
Confidence 88888888876554 555778899999999998754 2 4444555555555554
No 4
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=81.02 E-value=58 Score=34.14 Aligned_cols=259 Identities=14% Similarity=0.157 Sum_probs=139.1
Q ss_pred HHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc--chHHHHHHHHhcccccccc
Q 008600 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGADEHMYT 179 (560)
Q Consensus 102 ~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~--~~I~dlLlrLI~~de~~~~ 179 (560)
..+..|..+|..+. ++.+--.-+.++..+....+... ..+.. .+.+..|++.+.. +.+.+--+..++.--..
T Consensus 117 g~v~~Lv~lL~~~~--~~~v~~~A~~~L~~l~~~~~~~~-~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-- 190 (528)
T 4b8j_A 117 GVVPRFVQFLTRED--FPQLQFEAAWALTNIASGTSENT-KVVID-HGAVPIFVKLLGSSSDDVREQAVWALGNVAGD-- 190 (528)
T ss_dssp TCHHHHHHHHTCTT--CHHHHHHHHHHHHHHHTSCHHHH-HHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT--
T ss_pred CCHHHHHHHhCCCC--CHHHHHHHHHHHHHHhCCCHHHH-HHHHh-CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--
Confidence 45667777776542 24444444566666665443332 22222 2566777766643 33433322222211100
Q ss_pred cchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchh
Q 008600 180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSL 259 (560)
Q Consensus 180 ~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l 259 (560)
.......+.+.+.++.|+..+..+.++.+..+|+..|..+.+..|.+-... ....+..|+..+ .... ..+...++
T Consensus 191 -~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~lL-~~~~-~~v~~~a~ 265 (528)
T 4b8j_A 191 -SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ--TRPALPALARLI-HSND-EEVLTDAC 265 (528)
T ss_dssp -CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH--HTTHHHHHHHHT-TCCC-HHHHHHHH
T ss_pred -ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH--HHHHHHHHHHHH-CCCC-HHHHHHHH
Confidence 011223455678999999999777889999999999999987654321111 133444444443 2221 12333333
Q ss_pred hheeeccCccccCCchhhhhhccccCCCccccCccchHHHHh--hHHHHHHhhccCccccccccccCcccCCCchhhHHH
Q 008600 260 SICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKI 337 (560)
Q Consensus 260 ~Ili~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~--~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkI 337 (560)
..+-.|... .+.....++. -++.++++|..+. ...|...
T Consensus 266 ~aL~~l~~~-----------------------~~~~~~~~~~~g~v~~Lv~lL~~~~----------------~~v~~~a 306 (528)
T 4b8j_A 266 WALSYLSDG-----------------------TNDKIQAVIEAGVCPRLVELLLHPS----------------PSVLIPA 306 (528)
T ss_dssp HHHHHHTSS-----------------------CHHHHHHHHHTTCHHHHHHHTTCSC----------------HHHHHHH
T ss_pred HHHHHHHcC-----------------------CHHHHHHHHHcCHHHHHHHHHcCCC----------------hhHHHHH
Confidence 333333211 1111122221 3555666665321 1457778
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhCchHHHHHHh
Q 008600 338 VEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKILEA 414 (560)
Q Consensus 338 veLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~~~~~~L~~~Lf~~~~li~~Il~~ 414 (560)
+..+..|... +....+.+++.|+++.++.+.- .+-+.-+......++..+..+ +...+..++ +..+++.+++.
T Consensus 307 ~~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~-~~~~i~~L~~l 379 (528)
T 4b8j_A 307 LRTVGNIVTG-DDAQTQCIIDHQALPCLLSLLT-QNLKKSIKKEACWTISNITAG-NKDQIQAVI-NAGIIGPLVNL 379 (528)
T ss_dssp HHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTS-CHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHcC-CHHHHHHHHHhhhHHHHHHHHc-CCCcHHHHHHHHHHHHHHHCC-CHHHHHHHH-HCCCHHHHHHH
Confidence 8888887764 4455567888999999999875 332455556666666666543 444444444 34666666554
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=75.09 E-value=44 Score=30.56 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=68.0
Q ss_pred HHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcc--hHHHHHHHHhcccccccc
Q 008600 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYT 179 (560)
Q Consensus 102 ~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~--~I~dlLlrLI~~de~~~~ 179 (560)
..+..|..++..+ ++.....-+.++..|....+.. ...+.. .+.+..+++.+..+ .+..-.+..+..--..
T Consensus 86 ~~i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~-~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-- 158 (252)
T 4hxt_A 86 GGVEVLVKLLTST---DSEVQKEAARALANIASGPDEA-IKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASG-- 158 (252)
T ss_dssp THHHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCHHH-HHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--
T ss_pred CCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHH-HHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 3567777888753 3556666777777776544332 222222 35677777666443 3333333333221110
Q ss_pred cchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhc
Q 008600 180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS 223 (560)
Q Consensus 180 ~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~ 223 (560)
..+..+-+.+.+.++.|++.+. +.++++...|+..|..+...
T Consensus 159 -~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 159 -PDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASG 200 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcC
Confidence 1123345667889999999987 46689999999999998763
No 6
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=66.35 E-value=81 Score=29.00 Aligned_cols=197 Identities=15% Similarity=0.183 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcc--hHHHHHHHHhcccccccccchhHHHHHhhhhHHHHHHHhcCC
Q 008600 126 SKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSS 203 (560)
Q Consensus 126 ~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~--~I~dlLlrLI~~de~~~~~~~~~~~wl~~~~li~~Ll~~l~~ 203 (560)
++.+..++.+ ..+....+.. .+.+..|++.+..+ .+..--...++.--.. ..+....+.+.+.++.|+..|..
T Consensus 33 ~~~L~~~l~~-~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~ 107 (252)
T 4db8_A 33 TRKFSQILSD-GNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLLSS 107 (252)
T ss_dssp HHHHHHHHHH-HHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHcC-CCchHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHcC
Confidence 3344344444 3333333333 35677777777443 3333222222211100 01223445667899999999876
Q ss_pred CCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchhhheeeccCccccCCchhhhhhccc
Q 008600 204 SDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLDPKRLTLGTYYMFNRQL 283 (560)
Q Consensus 204 ~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~Ll~~~~~~~~~~~~~~~~~ 283 (560)
.+++++.+|+..|..|....+. -...+.....+..|++.+-. .. ..+...++..+-.|..
T Consensus 108 -~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~-~~-~~v~~~a~~~L~~l~~---------------- 167 (252)
T 4db8_A 108 -PNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSS-PN-EQILQEALWALSNIAS---------------- 167 (252)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHGGGC-SC-HHHHHHHHHHHHHHTT----------------
T ss_pred -CCHHHHHHHHHHHHHhhcCCch-HHHHHHHCCCHHHHHHHHhC-CC-HHHHHHHHHHHHHHHc----------------
Confidence 5789999999999998654332 11223333444444443321 11 1122222222222221
Q ss_pred cCCCccccCccchHHHH--hhHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Q 008600 284 THGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGA 361 (560)
Q Consensus 284 ~~~~~~~~~p~~~~~~l--~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveLia~LL~~~~~~i~~~L~~~~~ 361 (560)
..++....+. .-++.++++|..+. ...|...+..+..|.. +++...+.+.+.|+
T Consensus 168 -------~~~~~~~~~~~~~~i~~L~~ll~~~~----------------~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~ 223 (252)
T 4db8_A 168 -------GGNEQIQAVIDAGALPALVQLLSSPN----------------EQILQEALWALSNIAS-GGNEQKQAVKEAGA 223 (252)
T ss_dssp -------SCHHHHHHHHHTTCHHHHHHGGGCSS----------------HHHHHHHHHHHHHHTT-SCHHHHHHHHHTTH
T ss_pred -------CChHHHHHHHHCCCHHHHHHHHCCCC----------------HHHHHHHHHHHHHHhc-CCHHHHHHHHHCCc
Confidence 0122222222 13555666665321 2357788888888875 45556677889999
Q ss_pred HHHHHHHHhh
Q 008600 362 VRRILDLFFE 371 (560)
Q Consensus 362 ~~~lldlFf~ 371 (560)
++.++.+...
T Consensus 224 i~~L~~ll~~ 233 (252)
T 4db8_A 224 LEKLEQLQSH 233 (252)
T ss_dssp HHHHHTTTTC
T ss_pred HHHHHHHhCC
Confidence 9998887754
No 7
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=64.16 E-value=49 Score=32.74 Aligned_cols=159 Identities=14% Similarity=0.190 Sum_probs=93.4
Q ss_pred hhhhHHHHHHH-hcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchhhheeeccC
Q 008600 189 EDTNVLEMIVD-KFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICISLLD 267 (560)
Q Consensus 189 ~~~~li~~Ll~-~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~Ll~ 267 (560)
.+.+-++.|+. .|. +.++++...|+..|..|..-.|. ..+.+.....+..|+..+-.. +..++..+++..+-.+.+
T Consensus 78 ~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 78 CQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHc
Confidence 45577888888 665 56789999999999999875542 223333334455555433221 112233333333333332
Q ss_pred ccccCCchhhhhhccccCCCccccCccchHHHH--hhHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHHHH
Q 008600 268 PKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLL 345 (560)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l--~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveLia~LL 345 (560)
. +|.....+. .-++-++++|..+. -..|-+.+-.++.|.
T Consensus 155 ~-----------------------~~~~~~~~~~~ggi~~L~~lL~~~d----------------~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 155 E-----------------------QEAGLLQFLRLDGFSVLMRAMQQQV----------------QKLKVKSAFLLQNLL 195 (296)
T ss_dssp T-----------------------CHHHHHHHHHTTHHHHHHHHHHSSC----------------HHHHHHHHHHHHHHH
T ss_pred C-----------------------CcHHHHHHHHCCCHHHHHHHHcCCC----------------HHHHHHHHHHHHHHH
Confidence 1 111111121 13445556664321 135778899999988
Q ss_pred hcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcC
Q 008600 346 TVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLEC 392 (560)
Q Consensus 346 ~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~~ 392 (560)
..+ +...+.+++.|+++.+++|. +.+ +.-++.++...+..+..+
T Consensus 196 ~~~-~~~~~~vv~~g~i~~Lv~LL-~~~-d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 196 VGH-PEHKGTLCSMGMVQQLVALV-RTE-HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHC-GGGHHHHHHTTHHHHHHHHH-TSC-CSTHHHHHHHHHHHHHTT
T ss_pred hCC-hHHHHHHHHcCCHHHHHHHH-cCC-ChhHHHHHHHHHHHHHhC
Confidence 764 44557889999999999985 444 566777777777777654
No 8
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=63.68 E-value=1.8e+02 Score=32.16 Aligned_cols=205 Identities=14% Similarity=0.230 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHhhCcchH------HHHHHHHhcccccccccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHH
Q 008600 146 AHQEIMARLVDLIGITSI------MEVLIRLIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCS 219 (560)
Q Consensus 146 ~~~~~v~~llkHi~~~~I------~dlLlrLI~~de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~ 219 (560)
+.++-+..|+..++.... +.+|-.|....... .++ ..+....=|++|++.|+.+. +-+..-+.-+|++
T Consensus 119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~---~Q~--~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~ 192 (651)
T 3grl_A 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ---VQQ--IILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQA 192 (651)
T ss_dssp HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH---HHH--HHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH---HHH--HHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHH
Confidence 346677888877765432 11222222221110 111 23455678999999997543 3444447778888
Q ss_pred HHhcCchhHHhhcCChHHHHHHHHHHhcCCCCccccc--chhhheeeccCccccCCchhh-hhhccccCCCccccCccch
Q 008600 220 ITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLV--NSLSICISLLDPKRLTLGTYY-MFNRQLTHGSTVTVNPETV 296 (560)
Q Consensus 220 Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv--~~l~Ili~Ll~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~ 296 (560)
+.+-.++ +..-++-+..+++||+++-..+..+.++| -++.++-.|++.+ ...+ .|+..
T Consensus 193 Lt~~n~~-iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N----~sNQ~~FrEt-------------- 253 (651)
T 3grl_A 193 LTRSNGA-IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN----NSNQNFFKEG-------------- 253 (651)
T ss_dssp HHTTCHH-HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC----HHHHHHHHHT--------------
T ss_pred HhcCCHH-HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC----HHHHHHHHHc--------------
Confidence 8876543 33333345778999998866543232233 4566677777742 1111 12110
Q ss_pred HHHHhhHHHHHHhhccCccccccccccCcccCCCchhhHH----HHHHHHHHHhcCc-----HHHHHHHHHhhhHHHHHH
Q 008600 297 EGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLK----IVEFISVLLTVGS-----EAAEKELIRHGAVRRILD 367 (560)
Q Consensus 297 ~~~l~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLk----IveLia~LL~~~~-----~~i~~~L~~~~~~~~lld 367 (560)
..++.+..+|..+.. . ......|+. ++++|..|+.-++ ..-.+.+.+.|++..++.
T Consensus 254 ----~~i~~L~~LL~~~~~-~----------~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ 318 (651)
T 3grl_A 254 ----SYIQRMKPWFEVGDE-N----------SGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCT 318 (651)
T ss_dssp ----TCGGGGGGGGCCCSC-S----------SCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ----CCHHHHHHHhCCCcc-c----------cccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHH
Confidence 012222334432211 1 112222333 3455555555433 334567889999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHHh
Q 008600 368 LFFEYPYNNFLHHHVENIILSCL 390 (560)
Q Consensus 368 lFf~YpwNNfLH~~V~~ii~~il 390 (560)
+-|--..-.-+-......+..++
T Consensus 319 ll~~~~~p~~i~~~Al~tla~~i 341 (651)
T 3grl_A 319 ILMATGVPADILTETINTVSEVI 341 (651)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHH
Confidence 88865444555555555555544
No 9
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=63.34 E-value=29 Score=34.36 Aligned_cols=134 Identities=13% Similarity=0.191 Sum_probs=74.4
Q ss_pred hhhhhc---cchHHHHHHHhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhh
Q 008600 82 ACEIFT---CEVDIILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLI 158 (560)
Q Consensus 82 asEILs---~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi 158 (560)
|+.+|+ .+.+...+.+++. .-+..|...|..+. ++...---+..+++|...++...-.|+.. +.+..|++.+
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~-g~l~~Ll~LL~~~~--~~~v~~~A~~ALsnl~~~~~~~~~~~~~~--ggi~~L~~lL 176 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDRDA--CDTVRVKALFAISCLVREQEAGLLQFLRL--DGFSVLMRAM 176 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHccCC--CHHHHHHHHHHHHHHHcCCcHHHHHHHHC--CCHHHHHHHH
Confidence 555543 2444555555544 35666777776432 23333334456666666555544455542 2444444444
Q ss_pred Ccc--hHHHHHHHHhcc-cccccccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCc
Q 008600 159 GIT--SIMEVLIRLIGA-DEHMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (560)
Q Consensus 159 ~~~--~I~dlLlrLI~~-de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p 225 (560)
..+ .+.--....++. -.. ..+..+.+.+.+.++.|+..|... +++++..|+..|..|.+.++
T Consensus 177 ~~~d~~v~~~A~~aLs~L~~~----~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 177 QQQVQKLKVKSAFLLQNLLVG----HPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHHHHhC----ChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhCCh
Confidence 321 111111111111 000 123456778899999999998754 77899999999999988754
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=60.87 E-value=1.4e+02 Score=29.90 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=87.3
Q ss_pred HHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchhhheee
Q 008600 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS 264 (560)
Q Consensus 185 ~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~ 264 (560)
...+.+.++++.|+..+. +.++++..+|+..|..+....+. ..+.+.....+..|+..+ .... ..+-..++..+-.
T Consensus 227 ~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll-~~~~-~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDI-QTQVILNCSALQSLLHLL-SSPK-ESIKKEACWTISN 302 (450)
T ss_dssp HHHHHHTTTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHH-HHHHHHTTTHHHHHHHHT-TCSS-HHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChH-HHHHHHHCccHHHHHHHH-cCCC-HHHHHHHHHHHHH
Confidence 345556789999999886 56788899999999888664432 222222233344443332 1111 0111111111111
Q ss_pred ccCccccCCchhhhhhccccCCCccccCccchHHHH--hhHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHH
Q 008600 265 LLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFIS 342 (560)
Q Consensus 265 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l--~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveLia 342 (560)
+.. ..+.....++ .-++.++++|..+. ...|...+..+.
T Consensus 303 l~~-----------------------~~~~~~~~~~~~~~l~~L~~~l~~~~----------------~~v~~~a~~~L~ 343 (450)
T 2jdq_A 303 ITA-----------------------GNRAQIQTVIDANIFPALISILQTAE----------------FRTRKEAAWAIT 343 (450)
T ss_dssp HTT-----------------------SCHHHHHHHHHTTHHHHHHHHHHHSC----------------HHHHHHHHHHHH
T ss_pred HHc-----------------------CCHHHHHHHHHCCCHHHHHHHHhcCC----------------HHHHHHHHHHHH
Confidence 110 1122222222 13444555554211 146888889999
Q ss_pred HHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Q 008600 343 VLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCL 390 (560)
Q Consensus 343 ~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il 390 (560)
.|...+++...+.+++.|+++.++++.-.- +.-+...+...+..++
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVM--DSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHHGGGSS--CHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 988776666667788899999999987643 3334444444444444
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=60.84 E-value=80 Score=28.14 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=65.1
Q ss_pred HHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcc--hHHHHHHHHhcccccccc
Q 008600 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGADEHMYT 179 (560)
Q Consensus 102 ~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~--~I~dlLlrLI~~de~~~~ 179 (560)
..+..|..+|..+ ++.....-+.++..|....+...-..+ ..+.+..+++.+..+ .+..--...+..--..
T Consensus 54 g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-- 126 (210)
T 4db6_A 54 GALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSPNEQILQEALWALSNIASG-- 126 (210)
T ss_dssp THHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--
T ss_pred CCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHHHHHHH--HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC--
Confidence 3566777777654 444555556666666544433222222 234566666666443 2222222222111000
Q ss_pred cchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCc
Q 008600 180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (560)
Q Consensus 180 ~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p 225 (560)
..+..+-+.+.+.++.|++.+.. .+++++.+|+..|..+...++
T Consensus 127 -~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 127 -GNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCH
T ss_pred -CHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCc
Confidence 11122334577899999999875 478999999999999987644
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=58.43 E-value=1.5e+02 Score=29.58 Aligned_cols=263 Identities=16% Similarity=0.197 Sum_probs=138.9
Q ss_pred hcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc--chHHHHHHHHhcccc
Q 008600 98 VEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGADE 175 (560)
Q Consensus 98 ~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~--~~I~dlLlrLI~~de 175 (560)
++....+..|..+|..+. ++...-.-++++..+....+...-.++ ..+.+..|++.+.. +.+.+.-+..++.--
T Consensus 60 ~~~~~~i~~L~~~L~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~ 135 (450)
T 2jdq_A 60 ISTPGVVARFVEFLKRKE--NCTLQFESAWVLTNIASGNSLQTRIVI--QAGAVPIFIELLSSEFEDVQEQAVWALGNIA 135 (450)
T ss_dssp HTSTTHHHHHHHHHTCTT--CHHHHHHHHHHHHHHHSSCHHHHHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHCCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 333346667777776542 344444455666666654443332222 24566777666644 333333332222111
Q ss_pred cccccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcC-chhHHhhcCChHHHHHHHHHHhcCCCCccc
Q 008600 176 HMYTNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA-PPALAAKISSPNFIGRLFRHALENSRPKSV 254 (560)
Q Consensus 176 ~~~~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~-p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~ 254 (560)
.. .....+.+.+.+.++.|+..+..+.++++..+|+..|..+.+.. |.. ...+. ...+..|+..+- .+. ..+
T Consensus 136 ~~---~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~-~~~l~~L~~~l~-~~~-~~v 208 (450)
T 2jdq_A 136 GD---STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP-EFAKV-SPCLNVLSWLLF-VSD-TDV 208 (450)
T ss_dssp TT---CHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CGGGT-GGGHHHHHHHTT-CCC-HHH
T ss_pred cC---CHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHH-HHHHHHHHHHHc-cCC-HHH
Confidence 00 01122344556889999999987778999999999999998754 321 11112 445555554432 221 122
Q ss_pred ccchhhheeeccCccccCCchhhhhhccccCCCccccCccchHHHH--hhHHHHHHhhccCccccccccccCcccCCCch
Q 008600 255 LVNSLSICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGML--GRLGDLLKLLDVSSEESSLLTTYGKLQPPLGK 332 (560)
Q Consensus 255 lv~~l~Ili~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l--~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~ 332 (560)
...++..+-.+.+. .++....+. .-++.++++|..+. ..
T Consensus 209 ~~~a~~~L~~l~~~-----------------------~~~~~~~~~~~~~i~~L~~ll~~~~----------------~~ 249 (450)
T 2jdq_A 209 LADACWALSYLSDG-----------------------PNDKIQAVIDAGVCRRLVELLMHND----------------YK 249 (450)
T ss_dssp HHHHHHHHHHHTSS-----------------------SHHHHHHHHHTTTHHHHHHHTTCSC----------------HH
T ss_pred HHHHHHHHHHHHCC-----------------------CcHHHHHHHHcCcHHHHHHHHCCCc----------------hh
Confidence 22222322222210 011111121 13455666664211 14
Q ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCCChHHHHHHhhhCchHHHHH
Q 008600 333 HRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLECKNAPLIEHLLHECNLVGKIL 412 (560)
Q Consensus 333 ~RLkIveLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~~~~~~L~~~Lf~~~~li~~Il 412 (560)
.|...+..+..|.... +...+.+++.|+++.++.+.-. + +.-.......++..+..+ +......++ +.++++.++
T Consensus 250 v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~-~-~~~vr~~a~~~L~~l~~~-~~~~~~~~~-~~~~l~~L~ 324 (450)
T 2jdq_A 250 VVSPALRAVGNIVTGD-DIQTQVILNCSALQSLLHLLSS-P-KESIKKEACWTISNITAG-NRAQIQTVI-DANIFPALI 324 (450)
T ss_dssp HHHHHHHHHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTC-S-SHHHHHHHHHHHHHHTTS-CHHHHHHHH-HTTHHHHHH
T ss_pred HHHHHHHHHHHHhhCC-hHHHHHHHHCccHHHHHHHHcC-C-CHHHHHHHHHHHHHHHcC-CHHHHHHHH-HCCCHHHHH
Confidence 5777888888776643 4444567788999999988654 3 445555666666666543 344444444 356777766
Q ss_pred Hhh
Q 008600 413 EAE 415 (560)
Q Consensus 413 ~~~ 415 (560)
+.-
T Consensus 325 ~~l 327 (450)
T 2jdq_A 325 SIL 327 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=56.51 E-value=67 Score=33.99 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhc
Q 008600 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS 223 (560)
Q Consensus 185 ~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~ 223 (560)
++-+-+.++|++|+..|..+.+++++..|+..|..|...
T Consensus 112 i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~ 150 (529)
T 3tpo_A 112 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 150 (529)
T ss_dssp HHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence 345567899999999999888999999999999998753
No 14
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=53.91 E-value=1.2e+02 Score=26.93 Aligned_cols=158 Identities=11% Similarity=0.125 Sum_probs=86.2
Q ss_pred hHHHHhhcHHHHHHHHHHhccCCCCchHhhhccccchhhhhhhc---cchHHHHHHHhcCHHHHHHHHhccCCCCCCChh
Q 008600 44 RLINFLRERAQVEQLIQYIVVEAPEDAEKRRTFKFPFVACEIFT---CEVDIILKTLVEDEELMNLLFSFLEPKDSHSTL 120 (560)
Q Consensus 44 kLi~fL~~~~~l~~Li~yi~~~~~e~~~~~~~~kyp~iasEILs---~dv~~i~~~l~~~~~ll~~L~sfL~~~~~ln~~ 120 (560)
.....+.+...+..|++++....+ +-+ .-|+..|+ ...+.....+++ ...+..|..+|..+ ++.
T Consensus 45 ~~~~~i~~~g~i~~L~~lL~~~~~---~v~------~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~---~~~ 111 (210)
T 4db6_A 45 EQIQAVIDAGALPALVQLLSSPNE---QIL------QEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP---NEQ 111 (210)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCH---HHH------HHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHTTCS---CHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCH---HHH------HHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHcCC---cHH
Confidence 333344444557777777765421 111 12444433 233333344432 24567788888765 355
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcc--hHHHHHHHHhcc-cccccccchhHHHHHhhhhHHHHH
Q 008600 121 LAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEVLIRLIGA-DEHMYTNFTESMQWIEDTNVLEMI 197 (560)
Q Consensus 121 lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~--~I~dlLlrLI~~-de~~~~~~~~~~~wl~~~~li~~L 197 (560)
....-+.++..|....+... ..+. ..+.+..|++.+..+ .+..--...+.. -.. ..+....+.+.+.++.|
T Consensus 112 v~~~a~~~L~~l~~~~~~~~-~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~g~i~~L 185 (210)
T 4db6_A 112 ILQEALWALSNIASGGNEQI-QAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQKQAVKEAGALEKL 185 (210)
T ss_dssp HHHHHHHHHHHHTTSCHHHH-HHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS----CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHH-HHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----CcHHHHHHHHCCCHHHH
Confidence 66666677777765444332 2222 245777777776543 222222222211 111 01223456677999999
Q ss_pred HHhcCCCCCHHHHHhHHHHHHHHH
Q 008600 198 VDKFSSSDSPEVHANAAETLCSIT 221 (560)
Q Consensus 198 l~~l~~~~~~e~~~naae~L~~Ii 221 (560)
++.+. +.+++++.+|+..|..+.
T Consensus 186 ~~ll~-~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 186 EQLQS-HENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHGGG-CSCHHHHHHHHHHHHHHC
T ss_pred HHHHh-CCCHHHHHHHHHHHHHHh
Confidence 99886 568899999999988763
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=53.18 E-value=2.2e+02 Score=29.70 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCc
Q 008600 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAP 225 (560)
Q Consensus 186 ~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p 225 (560)
+.+.+.++++.|+..|..+ ++.+...|+..|..|...++
T Consensus 335 ~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~ 373 (530)
T 1wa5_B 335 QVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNT 373 (530)
T ss_dssp HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCH
Confidence 3444568999999988755 68888999999998866443
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=44.06 E-value=3e+02 Score=28.77 Aligned_cols=180 Identities=12% Similarity=0.185 Sum_probs=96.5
Q ss_pred HHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchhhheee
Q 008600 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS 264 (560)
Q Consensus 185 ~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~ 264 (560)
.+-..+.+++++|+..|. +.++.++.+|+..|..|....+ +....+ ++. +++..++.
T Consensus 286 ~~~v~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~----------~~~~~i----~~~--------g~l~~L~~ 342 (529)
T 3tpo_A 286 IEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTD----------EQTQKV----IDA--------GALAVFPS 342 (529)
T ss_dssp HHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCH----------HHHHHH----HHT--------TGGGGHHH
T ss_pred HHHHHhccchHHHHHHhc-CCChhHHHHHHHHHHHHHccch----------HHHHHH----hhc--------ccHHHHHH
Confidence 345567789999999886 4577888899988888864332 111112 111 22344445
Q ss_pred ccCccccCCchhhhh--hccccCCCccccCccchHHHHh--hHHHHHHhhccCccccccccccCcccCCCchhhHHHHHH
Q 008600 265 LLDPKRLTLGTYYMF--NRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEF 340 (560)
Q Consensus 265 Ll~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~l~--~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveL 340 (560)
|++...... ....+ -.++. ...+.....+.. -++.++.+|..+. -..|...+..
T Consensus 343 LL~~~~~~i-~~~a~~aL~nl~-----~~~~~~~~~v~~~g~i~~Lv~lL~~~~----------------~~v~~~A~~a 400 (529)
T 3tpo_A 343 LLTNPKTNI-QKEATWTMSNIT-----AGRQDQIQQVVNHGLVPFLVGVLSKAD----------------FKTQKAAAWA 400 (529)
T ss_dssp HTTCSSHHH-HHHHHHHHHHHH-----TSCHHHHHHHHHTTHHHHHHHHHHSSC----------------HHHHHHHHHH
T ss_pred HHcCCCHHH-HHHHHHHHHHHh-----cccHHHHHHHHhcCcHHHHHHHhcCCC----------------HHHHHHHHHH
Confidence 554211000 00000 00010 112222222222 2444555554211 1246677788
Q ss_pred HHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc----CCChHHHHHHhhhCchHHHH
Q 008600 341 ISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE----CKNAPLIEHLLHECNLVGKI 411 (560)
Q Consensus 341 ia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~----~~~~~L~~~Lf~~~~li~~I 411 (560)
+..|...++..-...|++.|+++.+++|.- .+ +.-+-.++.+.+..++. .....-...+|.+|..+++|
T Consensus 401 L~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-~~-d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 473 (529)
T 3tpo_A 401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AK-DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 473 (529)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CS-CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-CC-CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHH
Confidence 888877666666678999999999999864 33 44444455555555553 12333445566677766665
No 17
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=42.36 E-value=1.7e+02 Score=32.40 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=91.1
Q ss_pred HHHHHhcCHHHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcc--hHHH-HHHH
Q 008600 93 ILKTLVEDEELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIME-VLIR 169 (560)
Q Consensus 93 i~~~l~~~~~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~--~I~d-lLlr 169 (560)
+.+.+..+++-+..|.++|+.+. --.-=|=.+.+..|+..++..+++.|...|.=+..|+.-++.+ .|-. -++-
T Consensus 113 ~~d~f~~~~~~i~~Ll~lL~~~d---f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 113 FTEIFIKQQENVTLLLSLLEEFD---FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHHHHHSTHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHhcCcc---HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 66888889999999999997643 3344455789999999999999999999999999999988643 2322 2333
Q ss_pred HhcccccccccchhHHHHHhhhhHHHHHHHhcCCC---CCHHHHHhHHHHHHHHHhcC
Q 008600 170 LIGADEHMYTNFTESMQWIEDTNVLEMIVDKFSSS---DSPEVHANAAETLCSITRSA 224 (560)
Q Consensus 170 LI~~de~~~~~~~~~~~wl~~~~li~~Ll~~l~~~---~~~e~~~naae~L~~Ii~~~ 224 (560)
|+...+. ..++-..+.-++.+++|++.+... ....++.-+..+|..+.+..
T Consensus 190 L~~Lt~~----n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N 243 (651)
T 3grl_A 190 LQALTRS----NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN 243 (651)
T ss_dssp HHHHHTT----CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcC----CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC
Confidence 3333332 234555667788999999998543 34577777888888888754
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=39.15 E-value=3.5e+02 Score=28.15 Aligned_cols=178 Identities=12% Similarity=0.186 Sum_probs=98.6
Q ss_pred HHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHHhcCCCCcccccchhhheee
Q 008600 185 MQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHALENSRPKSVLVNSLSICIS 264 (560)
Q Consensus 185 ~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~Ili~ 264 (560)
.+.+.+.+++++|++.|.. .+..++.+++..|..|....+ +....++ +. .++..+..
T Consensus 267 ~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~~----------~~~~~i~----~~--------g~l~~L~~ 323 (510)
T 3ul1_B 267 IEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTD----------EQTQKVI----DA--------GALAVFPS 323 (510)
T ss_dssp HHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCH----------HHHHHHH----HT--------TGGGGCC-
T ss_pred HHHHHhcccchhhhhhhcC-CChhhhhHHHHHHHHhhcCCH----------HHHHHHh----hc--------cchHHHHH
Confidence 3455677899999998864 567888888888888755432 2112222 21 23456666
Q ss_pred ccCccccCCchhh--hh--hccccCCCccccCccchHHHHh--hHHHHHHhhccCccccccccccCcccCCCchhhHHHH
Q 008600 265 LLDPKRLTLGTYY--MF--NRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIV 338 (560)
Q Consensus 265 Ll~~~~~~~~~~~--~~--~~~~~~~~~~~~~p~~~~~~l~--~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIv 338 (560)
|++... .... .. -.++. ...+.....+.. -++.++.+|..+. -..|-..+
T Consensus 324 LL~~~~---~~v~~~A~~aL~nl~-----a~~~~~~~~v~~~g~i~~Lv~lL~~~~----------------~~v~~~Aa 379 (510)
T 3ul1_B 324 LLTNPK---TNIQKEATWTMSNIT-----AGRQDQIQQVVNHGLVPFLVGVLSKAD----------------FKTQKEAA 379 (510)
T ss_dssp CTTCSS---HHHHHHHHHHHHHHT-----TSCHHHHHHHHHTTHHHHHHHHHHSSC----------------HHHHHHHH
T ss_pred HhcCCC---HHHHHHHHHHHHHHH-----cCcHHHHHHHHhcCCHHHHHHHHcCCC----------------HHHHHHHH
Confidence 665321 1110 00 01111 112222222322 2444556654221 13566788
Q ss_pred HHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHHHHHHHHhc----CCChHHHHHHhhhCchHHHH
Q 008600 339 EFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVENIILSCLE----CKNAPLIEHLLHECNLVGKI 411 (560)
Q Consensus 339 eLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~~ii~~il~----~~~~~L~~~Lf~~~~li~~I 411 (560)
..+..|...++......|++.|+++.+++|.- .+ +.-+-..+.+.+..++. .....-...+|.+|..+++|
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-~~-d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 454 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AK-DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-CS-CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-CC-CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHH
Confidence 88888887777766678999999999999863 33 34444445555555553 12333445566667666665
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=36.14 E-value=2.5e+02 Score=25.49 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=66.9
Q ss_pred HHHHHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCc--chHHHHHHHHhcccccccc
Q 008600 102 ELMNLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGI--TSIMEVLIRLIGADEHMYT 179 (560)
Q Consensus 102 ~ll~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~--~~I~dlLlrLI~~de~~~~ 179 (560)
..+..|..+|..+. +-....-+.++..|....+... ..+.. .+.+..+++.+.. +.+..--...+..--..
T Consensus 54 g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~-~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-- 126 (252)
T 4db8_A 54 GALPALVQLLSSPN---EQILQEALWALSNIASGGNEQI-QAVID-AGALPALVQLLSSPNEQILQEALWALSNIASG-- 126 (252)
T ss_dssp THHHHHHHGGGCSC---HHHHHHHHHHHHHHTTSCHHHH-HHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--
T ss_pred CcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCHHHH-HHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--
Confidence 45677888887653 4455555666666655443322 22222 2466666666643 34444333333221111
Q ss_pred cchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcC
Q 008600 180 NFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA 224 (560)
Q Consensus 180 ~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~ 224 (560)
.......+.+.+.++.|++.+.. .++++..+|+..|..+....
T Consensus 127 -~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 127 -GNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGG 169 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSC
T ss_pred -CchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCC
Confidence 11222556778999999999964 47889999999999987654
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=32.80 E-value=2.3e+02 Score=30.90 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=85.1
Q ss_pred HHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcC-ch-hHHh-hcCChHHHHHHHHHHhcCCCCcccccchhh
Q 008600 184 SMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRSA-PP-ALAA-KISSPNFIGRLFRHALENSRPKSVLVNSLS 260 (560)
Q Consensus 184 ~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~-p~-~L~~-~L~s~e~i~~Ll~~~l~~~~~~s~lv~~l~ 260 (560)
-++||.....|+.|+..|..+.+++++.+|+-.|..+.+-. +. .-.+ .+.....+..|++.+ ..+. ..+...++.
T Consensus 300 Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL-~s~~-~~v~~~A~~ 377 (584)
T 3l6x_A 300 GYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL-TNEH-ERVVKAASG 377 (584)
T ss_dssp GGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG-GCSC-HHHHHHHHH
T ss_pred hHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH-cCCC-HHHHHHHHH
Confidence 45899888999999999987788999999999999997643 11 1112 222233333433322 2221 122333333
Q ss_pred heeeccCccccCCchhhhhhccccCCCccccCccchHHHHhhHHHHHHhhccCccccccccccCcccCCCchhhHHHHHH
Q 008600 261 ICISLLDPKRLTLGTYYMFNRQLTHGSTVTVNPETVEGMLGRLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEF 340 (560)
Q Consensus 261 Ili~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveL 340 (560)
.+-.|-+ ++ .+...++ ..-++.|+++|..+.... .+.. --..+..+|..
T Consensus 378 aL~nLs~------------------~~---~~~~~I~--~g~ip~LV~LL~~~~~~~--~~~~------s~~v~~~a~~t 426 (584)
T 3l6x_A 378 ALRNLAV------------------DA---RNKELIG--KHAIPNLVKNLPGGQQNS--SWNF------SEDTVISILNT 426 (584)
T ss_dssp HHHHHHT------------------TC---SCHHHHH--HHHHHHHHHTSSSSSCSG--GGTC------CHHHHHHHHHH
T ss_pred HHHHHhC------------------Ch---hHHHHHH--hCCHHHHHHHhcCCcccc--cccc------hHHHHHHHHHH
Confidence 2222211 00 0111121 235678888886432110 0000 01224456666
Q ss_pred HHHHHhcCcHHHHHHHHHhhhHHHHHHHHhh
Q 008600 341 ISVLLTVGSEAAEKELIRHGAVRRILDLFFE 371 (560)
Q Consensus 341 ia~LL~~~~~~i~~~L~~~~~~~~lldlFf~ 371 (560)
+..|+.. ++.-.+.+.+.|.++.++.|--.
T Consensus 427 L~NL~a~-~~~~~~~I~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 427 INEVIAE-NLEAAKKLRETQGIEKLVLINKS 456 (584)
T ss_dssp HHHHHTT-CHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHHhcC-CHHHHHHHHHCCChHHHHHHHhC
Confidence 6666644 55556789999999999999764
No 21
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=27.40 E-value=54 Score=32.17 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=50.4
Q ss_pred cCCCchhhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhhcCCCchhHHHHH-HHHHHHhc
Q 008600 327 QPPLGKHRLKIVEFISVLLTVGSEAAEKELIRHGAVRRILDLFFEYPYNNFLHHHVE-NIILSCLE 391 (560)
Q Consensus 327 ~~PLG~~RLkIveLia~LL~~~~~~i~~~L~~~~~~~~lldlFf~YpwNNfLH~~V~-~ii~~il~ 391 (560)
.+|+-.-||.....|.+|++.++..+..-|.++++++.|+...- ..+=|...|- -|++.|+.
T Consensus 112 ~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime---~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 112 TRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME---SGSELSKTVATFILQKILL 174 (268)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH---HSCHHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh---hccHHHHHHHHHHHHHHhc
Confidence 55899999999999999999999999999999999999998764 3555655544 45666664
No 22
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=25.16 E-value=1.2e+02 Score=31.95 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHh
Q 008600 186 QWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITR 222 (560)
Q Consensus 186 ~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~ 222 (560)
+-+-+.+.|++|++.|..+.+++++..|+-.|..|..
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias 130 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 130 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 4455789999999999988889999999999999864
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=23.05 E-value=4.3e+02 Score=24.05 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=52.4
Q ss_pred hhhhHHHHHHHHHhcCchhHHHHHHh-hhHHHHHHHHhhCcchHHHHHHHHhcccccccccchhHHHHHhh---------
Q 008600 121 LAGYFSKVVICLLLRKTVPLMHYIKA-HQEIMARLVDLIGITSIMEVLIRLIGADEHMYTNFTESMQWIED--------- 190 (560)
Q Consensus 121 lagyF~Ki~~~Ll~~k~~~~~~fl~~-~~~~v~~llkHi~~~~I~dlLlrLI~~de~~~~~~~~~~~wl~~--------- 190 (560)
...|...++..|+.+=.+.- ..++. --..+..++...+...+++.|+..+....+ ..+.+++.|+..
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~-~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~--~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKK-PNVVTALREAIDAIYASTSLEAQQESIVESLSNKNP--SVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHcCCCC
Confidence 44555566666655422211 12222 123455555566666666666666543221 123445555432
Q ss_pred ------hhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHh
Q 008600 191 ------TNVLEMIVDKFSSSDSPEVHANAAETLCSITR 222 (560)
Q Consensus 191 ------~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~ 222 (560)
..+++.|+..+. ...+++-..|.+.+..+.+
T Consensus 169 ~~~~~l~~l~p~l~~~l~-D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLN-EPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHH
Confidence 146666666663 4566777888888888775
No 24
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=22.81 E-value=3.9e+02 Score=29.67 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=32.7
Q ss_pred hHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcCChHHHHHHHHHH
Q 008600 192 NVLEMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKISSPNFIGRLFRHA 245 (560)
Q Consensus 192 ~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~s~e~i~~Ll~~~ 245 (560)
.+++-+++.|.. ..+++..||+..+.+|++..+..+... -+..+..|+.++
T Consensus 670 ~~lp~l~~~l~~-~~~~v~~~a~~alg~i~~~~~~~~~p~--~~~il~~L~~~l 720 (852)
T 4fdd_A 670 DFMPILGTNLNP-EFISVCNNATWAIGEISIQMGIEMQPY--IPMVLHQLVEII 720 (852)
T ss_dssp HHHHHHHHTCCT-TSHHHHHHHHHHHHHHHHHHGGGGGGG--THHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHhhHhHHHH--HHHHHHHHHHHh
Confidence 467777777743 456778899999999876544333333 245666666644
No 25
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=21.47 E-value=6.4e+02 Score=25.45 Aligned_cols=112 Identities=17% Similarity=0.310 Sum_probs=69.1
Q ss_pred HHHHhccCCCCCCChhhhhhHHHHHHHHHhcCchhHHHHHHhh-hHHHHHHHHhhCc--chHHHHHHHHhcc---ccccc
Q 008600 105 NLLFSFLEPKDSHSTLLAGYFSKVVICLLLRKTVPLMHYIKAH-QEIMARLVDLIGI--TSIMEVLIRLIGA---DEHMY 178 (560)
Q Consensus 105 ~~L~sfL~~~~~ln~~lagyF~Ki~~~Ll~~k~~~~~~fl~~~-~~~v~~llkHi~~--~~I~dlLlrLI~~---de~~~ 178 (560)
.++|.+++.++ =.+.|.-|+ ++..|+.+...-+-+||..+ +.|+...-+.+.. ...---=+||++. |..
T Consensus 167 ~~fF~yv~~~~--FdiasDAf~-TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~-- 241 (341)
T 1upk_A 167 YDFFRYVEMST--FDIASDAFA-TFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRH-- 241 (341)
T ss_dssp GHHHHHTTCSS--HHHHHHHHH-HHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGG--
T ss_pred HHHHHHhcCCC--chHHHHHHH-HHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCch--
Confidence 35566665432 233444444 77788888887777899876 4455555554433 2333333444443 333
Q ss_pred ccchhHHHHHhhhhHHHHHHHhcCCCCCHHHHHhHHHHHHHHHhc
Q 008600 179 TNFTESMQWIEDTNVLEMIVDKFSSSDSPEVHANAAETLCSITRS 223 (560)
Q Consensus 179 ~~~~~~~~wl~~~~li~~Ll~~l~~~~~~e~~~naae~L~~Ii~~ 223 (560)
|..-+..|..+.+-+.-+...|. +.+..+|.-|..+++=.+..
T Consensus 242 -N~~vM~~Yis~~~nLkl~M~LL~-d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 242 -NFTIMTKYISKPENLKLMMNLLR-DKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp -GHHHHHHHTTCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHhCCHHHHHHHHHHhc-CchhchhhhhhhheeeeeeC
Confidence 45556788888777777776664 55778888888888876653
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=20.48 E-value=6.4e+02 Score=25.08 Aligned_cols=206 Identities=14% Similarity=0.122 Sum_probs=104.9
Q ss_pred hhhhhHHHHHHHHHhcCchhHHHHHHhhhHHHHHHHHhhCcc--hHHHH---HHHHhcccccccccchhHHHHHhhhhHH
Q 008600 120 LLAGYFSKVVICLLLRKTVPLMHYIKAHQEIMARLVDLIGIT--SIMEV---LIRLIGADEHMYTNFTESMQWIEDTNVL 194 (560)
Q Consensus 120 ~lagyF~Ki~~~Ll~~k~~~~~~fl~~~~~~v~~llkHi~~~--~I~dl---LlrLI~~de~~~~~~~~~~~wl~~~~li 194 (560)
.+--+-+.++..|...+ .+.-..+....+.+..|++.+..+ .+.+- .++-++....+ ...+-+.+.+.|
T Consensus 99 ~~q~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-----~~k~~i~~~G~I 172 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-----NSKKTLREVGSV 172 (354)
T ss_dssp HHHHHHHHHHHHHTSSC-HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH-----HHHHHHHHCCCH
Confidence 34444555666665433 333444555566788888877543 33222 22333332111 112344577899
Q ss_pred HHHHHhcCCCCCHHHHHhHHHHHHHHHhcCchhHHhhcC-ChHHHHHHHHHHhcCCCCc--ccccchhhheeeccCcccc
Q 008600 195 EMIVDKFSSSDSPEVHANAAETLCSITRSAPPALAAKIS-SPNFIGRLFRHALENSRPK--SVLVNSLSICISLLDPKRL 271 (560)
Q Consensus 195 ~~Ll~~l~~~~~~e~~~naae~L~~Ii~~~p~~L~~~L~-s~e~i~~Ll~~~l~~~~~~--s~lv~~l~Ili~Ll~~~~~ 271 (560)
+.|++.|..+.+++++.+|+..|..+....+. .-..+. ....+..|++.+-.+.... .+..++..++-.|-
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~-nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs----- 246 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTE-NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS----- 246 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChh-hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHH-----
Confidence 99999876666888999999999988653321 111222 2333444443332211100 01112222111110
Q ss_pred CCchhhhhhccccCCCccccCccchHHHHh--hHHHHHHhhccCccccccccccCcccCCCchhhHHHHHHHHHHHhcCc
Q 008600 272 TLGTYYMFNRQLTHGSTVTVNPETVEGMLG--RLGDLLKLLDVSSEESSLLTTYGKLQPPLGKHRLKIVEFISVLLTVGS 349 (560)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~--~l~~l~~lL~~~~~~~~l~tt~G~~~~PLG~~RLkIveLia~LL~~~~ 349 (560)
. .++..++....+.+ -++.++++|..+.. ..|-..+..+..|-. ++
T Consensus 247 ---~------------~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~----------------~v~~~A~~aL~nLa~-~~ 294 (354)
T 3nmw_A 247 ---S------------LIATNEDHRQILRENNCLQTLLQHLKSHSL----------------TIVSNACGTLWNLSA-RN 294 (354)
T ss_dssp ---H------------HHTTCHHHHHHHHTTTHHHHHHHHTTCSCH----------------HHHHHHHHHHHHHTS-SC
T ss_pred ---h------------hccCCHHHHHHHHHcCCHHHHHHHHcCCCh----------------HHHHHHHHHHHHHhC-CC
Confidence 0 00012333333332 36667777753211 134456666666642 45
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 008600 350 EAAEKELIRHGAVRRILDLF 369 (560)
Q Consensus 350 ~~i~~~L~~~~~~~~lldlF 369 (560)
+...+.+.+.|+++.+++|.
T Consensus 295 ~~~~~~i~~~G~i~~Lv~LL 314 (354)
T 3nmw_A 295 PKDQEALWDMGAVSMLKNLI 314 (354)
T ss_dssp HHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 66668899999999988875
Done!