Query 008601
Match_columns 560
No_of_seqs 184 out of 1342
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 14:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0598 CorA Mg2+ and Co2+ tra 100.0 2.6E-51 5.6E-56 427.4 37.9 292 177-506 28-322 (322)
2 PRK09546 zntB zinc transporter 100.0 8.2E-50 1.8E-54 416.1 39.3 286 180-506 35-324 (324)
3 TIGR00383 corA magnesium Mg(2+ 100.0 3.2E-49 6.9E-54 409.2 37.7 305 163-506 9-318 (318)
4 PRK11085 magnesium/nickel/coba 100.0 2.1E-43 4.5E-48 366.4 37.3 290 181-506 25-316 (316)
5 PF01544 CorA: CorA-like Mg2+ 100.0 2.4E-43 5.2E-48 357.3 32.5 277 180-490 2-284 (292)
6 KOG2662 Magnesium transporters 99.2 4.1E-09 8.9E-14 111.3 21.5 143 356-504 218-410 (414)
7 PF01544 CorA: CorA-like Mg2+ 96.1 0.11 2.3E-06 52.8 13.5 169 325-504 119-292 (292)
8 PRK11085 magnesium/nickel/coba 95.8 0.93 2E-05 48.0 19.4 110 362-476 173-285 (316)
9 COG0598 CorA Mg2+ and Co2+ tra 95.0 2.7 5.8E-05 44.4 19.6 140 325-475 148-290 (322)
10 PRK09546 zntB zinc transporter 94.0 7.6 0.00017 40.9 20.3 124 356-491 187-317 (324)
11 TIGR00383 corA magnesium Mg(2+ 93.7 3.6 7.9E-05 42.8 17.1 122 356-489 180-309 (318)
12 PF11902 DUF3422: Protein of u 93.6 13 0.00027 41.2 21.5 184 308-503 201-418 (420)
13 PF04156 IncA: IncA protein; 91.2 0.96 2.1E-05 43.8 8.4 66 442-510 5-70 (191)
14 PF10267 Tmemb_cc2: Predicted 90.2 32 0.0007 37.7 21.1 71 401-481 297-378 (395)
15 PF07332 DUF1469: Protein of u 89.4 5.8 0.00013 35.5 11.2 58 445-502 41-99 (121)
16 PF03904 DUF334: Domain of unk 85.3 46 0.00099 33.8 17.1 35 435-469 145-181 (230)
17 PF06570 DUF1129: Protein of u 81.1 5.4 0.00012 39.4 7.4 52 360-411 10-66 (206)
18 COG1955 FlaJ Archaeal flagella 74.9 70 0.0015 36.2 14.2 26 392-417 116-141 (527)
19 COG3462 Predicted membrane pro 73.9 9.9 0.00021 34.2 6.0 61 444-507 16-79 (117)
20 PF11593 Med3: Mediator comple 71.3 32 0.00069 37.2 10.2 88 332-426 9-96 (379)
21 COG5487 Small integral membran 69.8 9.3 0.0002 29.8 4.3 24 447-472 4-27 (54)
22 PRK15348 type III secretion sy 69.6 4 8.7E-05 41.9 3.1 66 438-503 178-248 (249)
23 PRK13455 F0F1 ATP synthase sub 66.7 32 0.00069 33.3 8.6 26 441-472 1-26 (184)
24 PRK13682 hypothetical protein; 66.1 5 0.00011 31.3 2.2 32 447-481 4-35 (51)
25 PF10883 DUF2681: Protein of u 66.1 23 0.00049 30.8 6.5 65 485-549 8-72 (87)
26 PF06210 DUF1003: Protein of u 64.7 63 0.0014 29.1 9.3 38 448-485 5-42 (108)
27 PF10112 Halogen_Hydrol: 5-bro 64.3 39 0.00084 33.1 8.7 19 446-464 12-30 (199)
28 PF05478 Prominin: Prominin; 62.6 3.4E+02 0.0073 32.6 20.2 63 438-500 417-484 (806)
29 TIGR03185 DNA_S_dndD DNA sulfu 61.5 3.1E+02 0.0068 31.9 17.1 115 326-444 400-518 (650)
30 PF04011 LemA: LemA family; I 59.7 1.7E+02 0.0037 28.2 16.1 54 404-472 120-173 (186)
31 COG1459 PulF Type II secretory 57.6 1.2E+02 0.0025 33.4 11.8 22 450-472 182-203 (397)
32 PF05425 CopD: Copper resistan 56.8 35 0.00076 29.8 6.3 42 440-482 3-46 (105)
33 PF13994 PgaD: PgaD-like prote 56.5 27 0.00058 32.5 5.8 87 450-538 31-123 (138)
34 COG4420 Predicted membrane pro 55.8 74 0.0016 31.5 8.7 94 442-538 53-146 (191)
35 PF06305 DUF1049: Protein of u 54.8 14 0.00029 29.6 3.1 18 476-493 18-35 (68)
36 PF13273 DUF4064: Protein of u 54.1 18 0.0004 31.4 4.0 24 442-465 6-29 (100)
37 PF01277 Oleosin: Oleosin; In 54.0 58 0.0013 29.9 7.3 68 443-524 39-106 (118)
38 TIGR03647 Na_symport_sm probab 52.6 32 0.0007 29.1 5.1 24 468-492 35-58 (77)
39 PF09972 DUF2207: Predicted me 52.6 83 0.0018 34.4 9.8 66 444-516 400-465 (511)
40 PF06609 TRI12: Fungal trichot 52.2 19 0.00041 41.6 4.8 39 443-484 167-205 (599)
41 PF14316 DUF4381: Domain of un 51.3 44 0.00095 31.2 6.4 29 476-504 21-49 (146)
42 PF05817 Ribophorin_II: Oligos 51.0 28 0.0006 40.6 5.9 34 461-496 571-604 (636)
43 COG3771 Predicted membrane pro 50.8 56 0.0012 28.5 6.2 45 475-519 40-84 (97)
44 COG3462 Predicted membrane pro 50.8 77 0.0017 28.7 7.3 69 434-503 2-71 (117)
45 PF06127 DUF962: Protein of un 50.5 65 0.0014 28.0 6.9 60 434-510 16-75 (95)
46 PRK00247 putative inner membra 50.4 3.4E+02 0.0075 30.2 13.9 68 439-516 221-289 (429)
47 PRK11677 hypothetical protein; 50.1 58 0.0013 30.5 6.8 52 479-530 3-61 (134)
48 COG4949 Uncharacterized membra 49.3 3.6E+02 0.0079 28.9 15.4 68 433-506 353-420 (424)
49 COG3114 CcmD Heme exporter pro 47.9 1.2E+02 0.0027 24.9 7.4 24 510-533 37-60 (67)
50 KOG1277 Endosomal membrane pro 47.1 46 0.001 37.2 6.4 29 439-467 398-426 (593)
51 PF13937 DUF4212: Domain of un 46.2 48 0.001 28.4 5.1 21 470-491 41-61 (81)
52 PF11712 Vma12: Endoplasmic re 45.1 2.4E+02 0.0053 26.1 10.3 11 454-464 91-101 (142)
53 TIGR03142 cytochro_ccmI cytoch 44.9 1E+02 0.0022 27.8 7.4 49 478-526 2-53 (117)
54 PRK07668 hypothetical protein; 44.4 82 0.0018 32.6 7.5 21 444-464 105-125 (254)
55 PF04678 DUF607: Protein of un 44.1 3.1E+02 0.0067 26.6 16.7 57 443-516 101-158 (180)
56 PF14163 SieB: Superinfection 43.9 1.4E+02 0.0031 27.8 8.6 40 444-490 7-46 (151)
57 KOG3850 Predicted membrane pro 43.5 4.9E+02 0.011 28.7 22.6 21 401-421 345-365 (455)
58 PF13903 Claudin_2: PMP-22/EMP 43.3 33 0.00072 31.6 4.2 53 440-500 70-122 (172)
59 PF02687 FtsX: FtsX-like perme 43.2 67 0.0014 27.3 5.9 32 474-505 90-121 (121)
60 PF15086 UPF0542: Uncharacteri 42.9 58 0.0013 27.4 4.9 31 474-506 18-48 (74)
61 COG1422 Predicted membrane pro 41.5 1.1E+02 0.0023 30.6 7.5 63 455-521 24-87 (201)
62 PF13779 DUF4175: Domain of un 41.3 31 0.00067 41.3 4.4 17 498-514 51-67 (820)
63 TIGR01598 holin_phiLC3 holin, 41.2 17 0.00037 30.9 1.7 26 441-466 11-36 (78)
64 PF08372 PRT_C: Plant phosphor 40.9 2.2E+02 0.0048 27.3 9.3 24 475-498 94-117 (156)
65 TIGR02120 GspF general secreti 40.1 4.6E+02 0.01 28.2 13.0 10 289-298 23-32 (399)
66 PRK03001 M48 family peptidase; 39.2 1.3E+02 0.0028 31.1 8.3 30 481-510 33-65 (283)
67 PF10805 DUF2730: Protein of u 38.8 2.2E+02 0.0048 25.3 8.5 55 327-385 45-99 (106)
68 TIGR02976 phageshock_pspB phag 38.6 1.8E+02 0.0038 24.6 7.3 18 518-535 44-61 (75)
69 PRK13454 F0F1 ATP synthase sub 38.4 84 0.0018 30.5 6.3 7 466-472 20-26 (181)
70 PF05478 Prominin: Prominin; 38.2 7.8E+02 0.017 29.6 21.7 31 468-500 403-433 (806)
71 PF00873 ACR_tran: AcrB/AcrD/A 37.5 53 0.0012 40.1 5.8 22 444-466 440-461 (1021)
72 PF04238 DUF420: Protein of un 37.2 2.1E+02 0.0045 26.7 8.3 65 440-505 37-103 (133)
73 KOG2447 Oligosaccharyltransfer 36.6 69 0.0015 33.5 5.5 25 448-472 205-232 (287)
74 PF14015 DUF4231: Protein of u 36.4 2.6E+02 0.0056 24.2 8.6 7 457-463 38-44 (112)
75 PRK10881 putative hydrogenase 36.2 1.8E+02 0.004 31.6 9.1 54 440-500 21-79 (394)
76 PRK10633 hypothetical protein; 35.7 2.8E+02 0.0062 23.7 8.6 60 446-508 17-76 (80)
77 KOG1278 Endosomal membrane pro 33.8 30 0.00066 39.4 2.6 81 434-515 383-471 (628)
78 KOG3091 Nuclear pore complex, 33.7 5.5E+02 0.012 29.1 12.2 22 315-337 347-368 (508)
79 COG4327 Predicted membrane pro 33.6 58 0.0013 28.7 3.8 31 452-483 29-59 (101)
80 PF13223 DUF4031: Protein of u 33.5 55 0.0012 28.2 3.6 34 178-211 9-42 (83)
81 PF13120 DUF3974: Domain of un 32.9 41 0.00088 29.7 2.7 22 486-507 14-35 (126)
82 PF11137 DUF2909: Protein of u 32.0 2.2E+02 0.0047 23.3 6.6 60 441-503 1-60 (63)
83 KOG1691 emp24/gp25L/p24 family 31.6 1.8E+02 0.0039 29.3 7.3 36 406-450 152-187 (210)
84 PRK10692 hypothetical protein; 31.4 76 0.0016 27.6 4.1 30 466-496 31-60 (92)
85 PRK00523 hypothetical protein; 31.3 1.2E+02 0.0026 25.5 5.1 12 501-512 35-46 (72)
86 PF06667 PspB: Phage shock pro 31.1 2.5E+02 0.0054 23.7 7.1 55 477-535 4-61 (75)
87 KOG0810 SNARE protein Syntaxin 30.6 6.4E+02 0.014 26.8 11.7 20 434-453 263-282 (297)
88 COG4726 PilX Tfp pilus assembl 30.6 1.2E+02 0.0025 30.3 5.7 42 468-510 6-48 (196)
89 PF10856 DUF2678: Protein of u 30.5 59 0.0013 29.7 3.4 43 443-490 33-75 (118)
90 COG4117 Thiosulfate reductase 30.1 1.6E+02 0.0035 29.7 6.6 60 449-509 148-210 (221)
91 PRK01844 hypothetical protein; 29.7 1.3E+02 0.0029 25.2 5.1 12 501-512 34-45 (72)
92 PF10027 DUF2269: Predicted in 29.2 1.5E+02 0.0033 27.4 6.2 24 447-470 51-74 (150)
93 PRK15033 tricarballylate utili 29.2 1.4E+02 0.0031 32.8 6.7 63 436-507 232-302 (389)
94 COG5416 Uncharacterized integr 28.6 1.7E+02 0.0037 25.9 5.8 31 454-485 33-66 (98)
95 PRK10714 undecaprenyl phosphat 28.6 1.7E+02 0.0036 30.9 7.1 25 437-461 227-251 (325)
96 PF07331 TctB: Tripartite tric 28.5 3E+02 0.0065 24.8 8.0 42 446-487 5-46 (141)
97 PF10392 COG5: Golgi transport 28.3 4.7E+02 0.01 23.9 12.4 62 325-388 34-95 (132)
98 PRK11380 hypothetical protein; 28.0 2.3E+02 0.005 30.7 7.8 80 444-527 46-131 (353)
99 PF04531 Phage_holin_1: Bacter 27.7 1.1E+02 0.0025 26.1 4.6 29 438-466 9-37 (84)
100 PRK09731 putative general secr 27.6 1.1E+02 0.0025 29.9 5.2 26 485-510 39-64 (178)
101 KOG4615 Uncharacterized conser 27.4 1.8E+02 0.0039 25.4 5.7 62 420-490 21-82 (122)
102 PF10762 DUF2583: Protein of u 27.4 1.1E+02 0.0023 26.6 4.3 30 466-496 31-60 (89)
103 PF06196 DUF997: Protein of un 27.2 3.8E+02 0.0083 22.8 7.7 34 474-507 42-75 (80)
104 PF12273 RCR: Chitin synthesis 27.2 43 0.00093 30.6 2.1 6 476-481 2-7 (130)
105 PF11700 ATG22: Vacuole efflux 26.8 9.3E+02 0.02 26.9 14.0 69 426-496 333-401 (477)
106 PF11821 DUF3341: Protein of u 26.7 2.4E+02 0.0053 27.5 7.2 39 461-500 79-117 (173)
107 PF01988 VIT1: VIT family; In 26.6 4.2E+02 0.0092 26.2 9.2 63 444-515 7-69 (213)
108 PF07787 DUF1625: Protein of u 26.3 2.2E+02 0.0048 28.9 7.3 51 451-502 195-246 (248)
109 PF06785 UPF0242: Uncharacteri 26.1 97 0.0021 33.3 4.6 77 442-531 16-103 (401)
110 PRK06041 flagellar assembly pr 26.0 5.1E+02 0.011 29.8 10.8 9 455-463 208-216 (553)
111 KOG2775 Metallopeptidase [Gene 26.0 83 0.0018 33.5 4.0 43 503-546 67-109 (397)
112 PHA02844 putative transmembran 25.6 1.5E+02 0.0032 25.1 4.6 30 475-505 45-74 (75)
113 PF12263 DUF3611: Protein of u 25.4 2.1E+02 0.0046 28.2 6.6 15 443-457 27-41 (183)
114 PHA02650 hypothetical protein; 25.4 1.1E+02 0.0024 26.2 3.9 30 475-505 46-75 (81)
115 PF13042 DUF3902: Protein of u 25.3 2.5E+02 0.0055 26.9 6.7 46 418-466 46-91 (161)
116 PF10726 DUF2518: Protein of f 25.2 85 0.0018 29.8 3.6 52 440-500 10-61 (145)
117 PHA02819 hypothetical protein; 24.7 1.6E+02 0.0035 24.7 4.7 28 474-502 42-69 (71)
118 PRK10506 hypothetical protein; 24.6 1.2E+02 0.0025 28.9 4.6 58 477-535 10-67 (162)
119 PF02404 SCF: Stem cell factor 24.5 25 0.00054 36.3 0.0 41 493-535 230-273 (273)
120 PF08496 Peptidase_S49_N: Pept 24.3 79 0.0017 30.3 3.3 32 475-506 6-37 (155)
121 PF13858 DUF4199: Protein of u 24.1 3.1E+02 0.0068 25.4 7.4 66 443-509 29-98 (163)
122 PF08552 Kei1: Inositolphospho 23.9 89 0.0019 30.9 3.7 56 446-506 14-71 (189)
123 PF05461 ApoL: Apolipoprotein 23.7 5.3E+02 0.012 27.5 9.7 23 434-456 102-124 (313)
124 PHA03240 envelope glycoprotein 23.6 89 0.0019 31.6 3.6 20 474-493 210-229 (258)
125 COG3696 Putative silver efflux 23.5 28 0.0006 41.9 0.1 42 445-486 361-402 (1027)
126 PRK09458 pspB phage shock prot 22.9 4.2E+02 0.009 22.5 6.9 52 478-533 5-59 (75)
127 PF11026 DUF2721: Protein of u 22.9 5.9E+02 0.013 23.3 12.6 13 454-466 82-94 (130)
128 PRK10697 DNA-binding transcrip 22.4 2.2E+02 0.0047 26.2 5.6 48 492-539 53-104 (118)
129 PF13829 DUF4191: Domain of un 22.4 4.5E+02 0.0098 26.8 8.4 22 475-496 51-72 (224)
130 PRK13460 F0F1 ATP synthase sub 22.3 3.8E+02 0.0081 25.6 7.7 7 466-472 7-13 (173)
131 PF15212 SPATA19: Spermatogene 22.3 1E+02 0.0022 27.9 3.3 30 518-549 15-44 (130)
132 COG3105 Uncharacterized protei 22.1 4.3E+02 0.0092 24.8 7.4 13 519-531 55-67 (138)
133 PF11368 DUF3169: Protein of u 21.9 4E+02 0.0086 27.0 8.1 20 518-538 173-192 (248)
134 KOG4343 bZIP transcription fac 21.7 4.5E+02 0.0098 30.2 8.9 78 392-469 299-382 (655)
135 PF02990 EMP70: Endomembrane p 21.6 75 0.0016 36.0 3.1 67 441-507 329-397 (521)
136 PRK10573 type IV pilin biogene 21.4 1E+03 0.022 25.5 12.6 11 289-299 29-39 (399)
137 PF00822 PMP22_Claudin: PMP-22 21.3 54 0.0012 30.3 1.6 56 438-500 70-125 (166)
138 PF02990 EMP70: Endomembrane p 21.2 2.2E+02 0.0048 32.3 6.7 27 437-463 366-392 (521)
139 PF08372 PRT_C: Plant phosphor 20.9 2.8E+02 0.0062 26.6 6.3 29 444-472 106-134 (156)
140 PRK06041 flagellar assembly pr 20.8 1.3E+03 0.028 26.5 15.3 12 397-408 143-154 (553)
141 PF12273 RCR: Chitin synthesis 20.7 1.1E+02 0.0024 28.0 3.4 20 479-499 2-21 (130)
142 COG0811 TolQ Biopolymer transp 20.5 8.5E+02 0.018 24.2 14.2 17 326-342 34-50 (216)
143 PF09788 Tmemb_55A: Transmembr 20.5 68 0.0015 33.1 2.2 54 444-503 201-254 (256)
144 PF02060 ISK_Channel: Slow vol 20.4 83 0.0018 29.2 2.5 52 454-505 14-71 (129)
145 TIGR00914 2A0601 heavy metal e 20.3 7.5E+02 0.016 30.6 11.4 35 443-486 456-490 (1051)
146 TIGR00782 ccoP cytochrome c ox 20.1 3.6E+02 0.0077 28.0 7.5 55 462-518 13-77 (285)
No 1
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-51 Score=427.42 Aligned_cols=292 Identities=21% Similarity=0.278 Sum_probs=262.9
Q ss_pred CCCCCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCccc
Q 008601 177 RPAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDD 256 (560)
Q Consensus 177 ~~~~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d 256 (560)
.+..+++|+|+..|++++.++|++.||||+++++++++.++ ||| ++.+++++|++++++.. +.+.+..+
T Consensus 28 ~~~~~~~Widl~~p~~~e~~~l~~~~~l~~~~~ed~~~~~~----r~r------~e~~d~~~~i~~~~~~~-~~~~~~~~ 96 (322)
T COG0598 28 LPEDGFVWIDLVEPDDEELEWLAKTFGLHPLALEDLLDAEQ----RPK------VERYDDYLFIVLRDVNL-EEEEDKAE 96 (322)
T ss_pred cCCCCeEEEECCCCCHHHHHHHHHhcCCCcchHHHHhCccc----CCc------eEeeCCEEEEEEEeecc-cccccccc
Confidence 34455789999999999999999999999999999999987 577 89999999999988765 22222112
Q ss_pred ccEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 008601 257 IPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEI 336 (560)
Q Consensus 257 ~t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeL 336 (560)
+.+++|++++++|||+|+. +..++..+++++.++. ..+.++.+++++|++.++|.|.+ +++++++++++|
T Consensus 97 -~~~v~~i~~~~~liT~r~~-------~~~~~~~vr~r~~~~~-~~~~~~~~l~~~lld~i~d~~~~-~le~i~~~~~~i 166 (322)
T COG0598 97 -TEPVSIIVGKRRLITIRHR-------PLPAFDRVRERLEKGT-LLTRGADELLYALLDAIVDNYFP-VLEQIEDELEAI 166 (322)
T ss_pred -ceeEEEEEeCCEEEEEecC-------CCccHHHHHHHHhccc-cccCCHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHH
Confidence 4999999999999999996 7899999999999963 46789999999999999999999 999999999999
Q ss_pred HHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcChhHHHHHHHHHHHHHHHHHHHHH
Q 008601 337 ELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH---LRGNVARTLLEGIRKNAREMIEEQEA 413 (560)
Q Consensus 337 E~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~---l~~~~~~~~L~dI~d~~~rlle~lea 413 (560)
|++++..+.++ .+.+|+.+||.++++|+++.++++++..+.+. ...++.+.+++|+.+|+.++.+.++.
T Consensus 167 e~~l~~~~~~~--------~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~ 238 (322)
T COG0598 167 EDQLLASTTNE--------ELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEA 238 (322)
T ss_pred HHHHhcCccHH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987542 46799999999999999999999999999862 34778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 008601 414 VRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLI 493 (560)
Q Consensus 414 lre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~ 493 (560)
++++++.++|++.|.+ |++||++||+||++|+||+|||||||+|||||++|||++ ||||||+++++|++++++
T Consensus 239 ~~~~l~~l~d~~~s~i----s~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~-~~~Gy~~~l~~m~~~~~~-- 311 (322)
T COG0598 239 LRERLSSLLDAYLSLI----NNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELD-WPYGYPIALILMLLLALL-- 311 (322)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCC-CcccHHHHHHHHHHHHHH--
Confidence 9999999999999999 899999999999999999999999999999999999999 999999999999998775
Q ss_pred HHHHHHhhccCCc
Q 008601 494 AVGLLYLGLKKPI 506 (560)
Q Consensus 494 ~~~l~y~~~k~~~ 506 (560)
...||++|+|+
T Consensus 312 --~~~~frrk~Wl 322 (322)
T COG0598 312 --LYLYFRRKGWL 322 (322)
T ss_pred --HHHHHHhcCcC
Confidence 45678888884
No 2
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=8.2e-50 Score=416.12 Aligned_cols=286 Identities=20% Similarity=0.302 Sum_probs=248.9
Q ss_pred CCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhcc-chhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCccccc
Q 008601 180 GPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDE-SRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP 258 (560)
Q Consensus 180 ~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~-~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t 258 (560)
+.++|+|+..|++++.+||.+. ++||..+++++.+ ++ ||| ++.+++++|++++.+.. ++.....+ +
T Consensus 35 ~~~~Wi~l~~~~~~e~~~L~~~-~~~~~~~~d~l~~~~~----rpk------~e~~~~~~~iil~~~~~-~~~~~~~~-~ 101 (324)
T PRK09546 35 AHPCWLHLDYTHPDSAQWLATT-PLLPDNVRDALAGEST----RPR------VSRLGEGTLITLRCING-NTDERPDQ-L 101 (324)
T ss_pred CCCEEEEeCCCChhHHHHHHhc-CCCCHHHHHHHhCCCC----CCc------EEEECCEEEEEEEeccC-CCCCChhh-e
Confidence 3467999999999999999975 5666666666654 44 688 89999999999998865 33332223 4
Q ss_pred EEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 008601 259 IVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIEL 338 (560)
Q Consensus 259 ~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~ 338 (560)
.+++||+++++|||+|+. +...++++++++..+. .+.++.++++.|++.+++.|.+ +++.++++++++|+
T Consensus 102 ~~l~~~l~~~~lITv~~~-------~~~~~~~~~~~~~~~~--~~~~~~~ll~~lld~ivd~~~~-~l~~i~~~ld~lE~ 171 (324)
T PRK09546 102 VAMRVYITDRLIVSTRHR-------KVLALDDVVSDLQEGT--GPTDCGGWLVDVCDALTDHASE-FIEELHDKIIDLED 171 (324)
T ss_pred EEEEEEEeCCEEEEEecC-------CcccHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 899999999999999996 7889999999998875 5667889999999999999999 99999999999999
Q ss_pred HhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 339 KFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAVR 415 (560)
Q Consensus 339 ~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~lealr 415 (560)
+++.+... .+++|+.+||+++++|+++.|+++++.+|.+ ...+++.+.+++|+.+|+.++.+++++++
T Consensus 172 ~l~~~~~~---------~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~~~l~~~~ 242 (324)
T PRK09546 172 NLLDQQIP---------PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDRRRMQDIADRLGRGLDDLDACI 242 (324)
T ss_pred HHhcCCCc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99875321 1368999999999999999999999999984 23456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008601 416 GRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAV 495 (560)
Q Consensus 416 e~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~ 495 (560)
+++..++|.|.+.+ ++++|++||+||++|+||+|||||||||||||++|||++ ||||||+++++|+++++++++
T Consensus 243 ~~~~~l~d~~~s~~----s~~~N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~-~~~gy~~~l~im~~i~~~~~~- 316 (324)
T PRK09546 243 ARTAVLADEIASVM----AEAMNRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGG-WPFGFSIFCLLLVVLIGGVAW- 316 (324)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcC-CcchHHHHHHHHHHHHHHHHH-
Confidence 99999999999998 799999999999999999999999999999999999999 999999999999988876544
Q ss_pred HHHHhhccCCc
Q 008601 496 GLLYLGLKKPI 506 (560)
Q Consensus 496 ~l~y~~~k~~~ 506 (560)
||++|+|+
T Consensus 317 ---~fkrk~Wl 324 (324)
T PRK09546 317 ---WLKRSKWL 324 (324)
T ss_pred ---HHHhcccC
Confidence 67888885
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=3.2e-49 Score=409.22 Aligned_cols=305 Identities=16% Similarity=0.179 Sum_probs=261.5
Q ss_pred CCCccccccCccccCCCCCeEEEEecCCCHHH-HHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEE
Q 008601 163 DDITVADLAAPYWERPAGPVWWCHMLAGHPSV-EAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFE 241 (560)
Q Consensus 163 ~~l~~~dl~~~~~~~~~~~~~WIdl~~pt~~e-~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfii 241 (560)
+.++....... +...++..+|+|+.+|++++ +++|.+.||+|+.+++++++.++ ||| ++.+++++|++
T Consensus 9 ~~~~~~~~~~~-~~~~~~~~~Widl~~p~~~e~~~~l~~~~~l~~~~~ed~~~~~~----~~k------~e~~~~~~~i~ 77 (318)
T TIGR00383 9 SRLIKIPFFEE-FSQELNTVLWIDLIEPTDEETLAKLGQFFAIHPLALEDILNSPQ----RPK------VEEDEDHLFII 77 (318)
T ss_pred ccceEecchhh-hcCCCCceEEEEccCCCcHHHHHHHHHHcCcCcchHHHhhCCCC----CCc------EEEECCEEEEE
Confidence 44444443221 24455667899999999999 89999999999999999999876 578 88999999999
Q ss_pred EeccccCCCCCCcccccEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhh
Q 008601 242 LLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWD 321 (560)
Q Consensus 242 L~~~~~~~~~~e~~d~t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~ 321 (560)
++.+.. +..... . +.+++|++++++|||++.. +...++.+++++..++.....++.++++.|++.+++.|
T Consensus 78 ~~~~~~-~~~~~~-~-~~~l~~~l~~~~liTv~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~il~~ivd~~ 147 (318)
T TIGR00383 78 SFFLNE-DEDDTF-E-TEQVSFILGKNLLFTIHER-------ELPAFDSIRERIRTSQKVFEKGADYLLYDIFDAIIDSY 147 (318)
T ss_pred EEeeec-cCCCcc-e-eEEEEEEEECCEEEEEEcC-------CCCcHHHHHHHHHhCchhhhCCHHHHHHHHHHHHHhcc
Confidence 988764 221111 2 5899999999999999986 67889999998877642223478999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h--cChhHHHHH
Q 008601 322 DRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--L--RGNVARTLL 397 (560)
Q Consensus 322 ~~~~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~--l--~~~~~~~~L 397 (560)
.+ .++.++++++++|++++..+.+. .+.+|+.+|++++++++++.++++++..+.+. + ..++.+.++
T Consensus 148 ~~-~l~~l~~~~~~le~~l~~~~~~~--------~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~ 218 (318)
T TIGR00383 148 FP-LLENIEDELEELEDEIISGPTST--------LMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYL 218 (318)
T ss_pred HH-HHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHH
Confidence 99 99999999999999999865422 46799999999999999999999999999752 2 246788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCch
Q 008601 398 EGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYA 477 (560)
Q Consensus 398 ~dI~d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyG 477 (560)
+|+.+++.++.+.++.+++++..++|.+.+.+ ++++|++||+||++|+||+|||||||+|||||++||+++ |+||
T Consensus 219 ~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~----s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~-~~~g 293 (318)
T TIGR00383 219 RDIYDHILSLLEMIETYRELLSSLMDLYLSLV----NNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELN-WKYG 293 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCcccc-chhH
Confidence 99999999999999999999999999999998 899999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 008601 478 FGLFTAILFFIGVVLIAVGLLYLGLKKPI 506 (560)
Q Consensus 478 y~i~l~imvlia~vl~~~~l~y~~~k~~~ 506 (560)
||+++++|++++++ .+.||++|+|+
T Consensus 294 y~~~l~~m~~i~~~----~~~~fkrk~Wl 318 (318)
T TIGR00383 294 YPAVLIVMAVIALG----PLIYFRRKGWL 318 (318)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 99999999988765 56678889885
No 4
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=100.00 E-value=2.1e-43 Score=366.44 Aligned_cols=290 Identities=10% Similarity=0.057 Sum_probs=243.1
Q ss_pred CeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccccEE
Q 008601 181 PVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIV 260 (560)
Q Consensus 181 ~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t~~ 260 (560)
.++|||+..|+++|.+++++.||+|..+.+++.+-+.+ || ++.+++++++....... .+..... +.+
T Consensus 25 ~~vWiDl~~Pt~eE~~~v~~~~gl~~pt~~~~eeIe~s----sR------~~~~~~~~~~~~~~~~~-~~~~~~~--~~~ 91 (316)
T PRK11085 25 DAVWIDLVEPDDDERLRVQSELGQSLATRPELEDIEAS----AR------FFEDEDGLHIHSFFFFE-DAEDHAG--NST 91 (316)
T ss_pred CCEEEEcCCCCHHHHHHHHHHhCCCCCChhhHHHHhhC----ce------EEEECCeEEEEEEEEec-CCCCCcc--cee
Confidence 46799999999999999999999996666665555443 33 78888887766655433 1222222 489
Q ss_pred EEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 008601 261 LRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKF 340 (560)
Q Consensus 261 L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~v 340 (560)
++|++++++|||+|+. +...+..+++++..++ ....++.++++.|++.++|++.+ .++.++.++|.++..+
T Consensus 92 v~fil~~~~LvTvr~~-------~~~~f~~~~~r~~~~~-~~~~~~~~vl~~Lld~iVd~~ad-~lE~~~~~ld~ls~~i 162 (316)
T PRK11085 92 VAFTIRDGRLFTLRER-------ELPAFRLYRMRARSQT-LVDGNAYELLLDLFETKIEQLAD-EIENIYSDLEKLSRVI 162 (316)
T ss_pred EEEEEECCEEEEEecC-------CcchHHHHHHHHHhCC-cccCCHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHh
Confidence 9999999999999996 6889999999998775 22458999999999999999999 9999999999999999
Q ss_pred hcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 341 VNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--LRGNVARTLLEGIRKNAREMIEEQEAVRGRL 418 (560)
Q Consensus 341 ~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~--l~~~~~~~~L~dI~d~~~rlle~lealre~l 418 (560)
+.++...+ + ...+++|.++++.+..+|+++.+.++++..+.+. + ..+....++++.+++.++.+..+.+++++
T Consensus 163 f~~~~~~~---~-~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~-~~~~~~~~~~~~~Di~~l~~~~~~~~~~~ 237 (316)
T PRK11085 163 MEGHQGDE---Y-DEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARL-PGGQLEQAREILRDIESLLPHNESLFQKV 237 (316)
T ss_pred ccCCCchh---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97542222 1 3466899999999999999999999999988752 3 23444667888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008601 419 FTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLL 498 (560)
Q Consensus 419 ~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~ 498 (560)
..++|++.+.+ |+++|++||+||++|+||+|||+|||+|||||++|||++ |+||||+++++|+++++++ +.
T Consensus 238 ~~l~d~~~~~i----~~~~N~~mk~lTv~s~if~pptliagiyGMNf~~mP~~~-~~~g~~~~l~~~~~~~~~~----~~ 308 (316)
T PRK11085 238 NFLMQAAMGFI----NIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELK-WSFGYPGAIILMILAGLAP----YL 308 (316)
T ss_pred HHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC-CcHHHHHHHHHHHHHHHHH----HH
Confidence 99999999998 899999999999999999999999999999999999999 9999999999999887754 44
Q ss_pred HhhccCCc
Q 008601 499 YLGLKKPI 506 (560)
Q Consensus 499 y~~~k~~~ 506 (560)
||++|+|+
T Consensus 309 ~f~rk~Wl 316 (316)
T PRK11085 309 YFKRKNWL 316 (316)
T ss_pred HHHHcccC
Confidence 67888884
No 5
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=100.00 E-value=2.4e-43 Score=357.27 Aligned_cols=277 Identities=23% Similarity=0.302 Sum_probs=234.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccccE
Q 008601 180 GPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPI 259 (560)
Q Consensus 180 ~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t~ 259 (560)
+.++|+|+.+|+++++++|.+.||||+.++++++++++ ||| ++.++++.+++++.+.. .+...... ..
T Consensus 2 ~~~~Wi~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~----~~~------~~~~~~~~~~~l~~~~~-~~~~~~~~-~~ 69 (292)
T PF01544_consen 2 DGFVWIDLSGPDDEELEWLAEEFGLHPLTIEDALDPEE----RPR------IEVFDDYLFIVLRAPEY-EEEDDIDE-ES 69 (292)
T ss_dssp SS-EEEEEETTTCHHHHHHHHTTTS-HHHHHHHCCTSS----SSE------EEEETTEEEEEEEEEEE-STTCCECC-EE
T ss_pred CccEEEEEeCCCHHHHHHHHHHhCcCHhHHHHHhCCCc----CCE------EEEECCeEEEEEEEcch-hhcccccc-cc
Confidence 35789999999999999999999999999999999887 467 89999999999998876 33222222 25
Q ss_pred EEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008601 260 VLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELK 339 (560)
Q Consensus 260 ~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~ 339 (560)
++++++++++|||++.. +...++++.+++... ...+.++.++++.+++.+++.|.+ .++.++++++++|+.
T Consensus 70 ~l~~~~~~~~lit~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~ll~~il~~~~~~~~~-~l~~l~~~l~~le~~ 140 (292)
T PF01544_consen 70 PLSFILGDNFLITVHRD-------PLPFIDELRERLESR-NERPSSPEDLLYAILDEIVDDYFE-VLEELEDELDELEDE 140 (292)
T ss_dssp EEEEEEETTEEEEEESS-------SSHCHHHHHHHHHST-TCSCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred eEEEEEecceEEEEECC-------CChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 89999999999999996 688899999999822 247789999999999999999999 999999999999999
Q ss_pred hhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 340 FVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEEQEAVR 415 (560)
Q Consensus 340 v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~----~l~~~~~~~~L~dI~d~~~rlle~lealr 415 (560)
+.....+ ...++|..+|+.+.++++.+.+.++++.++.. ...+++.+.+++++.+++.++.+.++.++
T Consensus 141 ~~~~~~~--------~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (292)
T PF01544_consen 141 LDDRPSN--------ELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLERAESLR 212 (292)
T ss_dssp HTHTTTH--------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccch--------hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9655532 24679999999999999999999999977775 22345678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHH--HHHHHHHHH
Q 008601 416 GRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLF--TAILFFIGV 490 (560)
Q Consensus 416 e~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~--l~imvlia~ 490 (560)
+++..+++.+.+.+ ++++|++||+||++|+||+|+|||||+|||||++||+.+ |+|||+++ +++|+++++
T Consensus 213 ~~~~~l~~~~~~~~----~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~p~~~-~~~g~~~~~~~~~~~~~~~ 284 (292)
T PF01544_consen 213 ERLESLQDLYQSKL----SNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGMPELD-WPYGYFFVIILGLMILVAI 284 (292)
T ss_dssp HHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS---SSS-SSS-SHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCccC-CccHHHHHHHHHHHHHHHH
Confidence 99999999999998 799999999999999999999999999999999999999 99988877 555555443
No 6
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=99.15 E-value=4.1e-09 Score=111.33 Aligned_cols=143 Identities=22% Similarity=0.331 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hh---------------cC----------------hh
Q 008601 356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQ------------HL---------------RG----------------NV 392 (560)
Q Consensus 356 ~l~~I~~LRr~li~Lrr~L~~~revl~~L~~------------~l---------------~~----------------~~ 392 (560)
.++++..+++.+..+..-....++.+.+|+. ++ .. ++
T Consensus 218 nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~d 297 (414)
T KOG2662|consen 218 NLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGED 297 (414)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccc
Confidence 3678899999999987777778888887762 11 00 01
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccCC
Q 008601 393 ART----LLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTH---NLAVFGGCGVVLTVITGLFGINV 465 (560)
Q Consensus 393 ~~~----~L~dI~d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK---~LTVvSaIFLPLTfIaGiyGMNF 465 (560)
+.+ .|+.=+.++..+.+.++.+++.+....|.+.=+ ++++.|+.|. .||+-|.++..-++++|+||||.
T Consensus 298 d~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~----LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl 373 (414)
T KOG2662|consen 298 DVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQ----LDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNL 373 (414)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 111 111112334444444445555555444433333 3666777665 58999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 008601 466 DGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK 504 (560)
Q Consensus 466 ~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~ 504 (560)
. .+..+ .||+|+++++++++++++++..-+-|.+.||
T Consensus 374 ~-~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~kr 410 (414)
T KOG2662|consen 374 P-SSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKR 410 (414)
T ss_pred c-chhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8 66666 7999999999999999999999888888887
No 7
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=96.08 E-value=0.11 Score=52.81 Aligned_cols=169 Identities=15% Similarity=0.185 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cChhHHHHHHHH
Q 008601 325 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHL----RGNVARTLLEGI 400 (560)
Q Consensus 325 ~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~l----~~~~~~~~L~dI 400 (560)
.++.....++.+++++-.-. + ......-...-+++..+|+.+...+..+.....-+ ........-.+.
T Consensus 119 ~~~~~~~~l~~l~~~l~~le---~-----~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~ 190 (292)
T PF01544_consen 119 IVDDYFEVLEELEDELDELE---D-----ELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDED 190 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---H-----HHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---h-----hcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhH
Confidence 45666677777776653321 0 00011223344556667777766666655544322 111222223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHH
Q 008601 401 RKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGL 480 (560)
Q Consensus 401 ~d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i 480 (560)
...+..+.+.++.+.+++..+.+...+..+...+...++.-+.+..+|++-+...=+|=+-|+ |+ |-... -|..-|-
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~-fG-MN~~~-~p~~~~~ 267 (292)
T PF01544_consen 191 KEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGI-FG-MNFKG-MPELDWP 267 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS-TT-S-SS----SSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCccC-CCccCCc
Confidence 566888899999999999999999999988888888888888888887777777555666665 44 76555 4543322
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhccC
Q 008601 481 -FTAILFFIGVVLIAVGLLYLGLKK 504 (560)
Q Consensus 481 -~l~imvlia~vl~~~~l~y~~~k~ 504 (560)
.....+++++++++.++.|+.+||
T Consensus 268 ~g~~~~~~~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 268 YGYFFVIILGLMILVAILLYWWFKR 292 (292)
T ss_dssp S-SHHH--HHHHHHHHHHHHCCTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHheeC
Confidence 233333345555566666666665
No 8
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=95.83 E-value=0.93 Score=48.03 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 362 RLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSL 438 (560)
Q Consensus 362 ~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N 438 (560)
++=+++.++++.+...++.+..+.+ .+... .....+..++++.+.++++.+.++++.+.|...+.+.+.++.-.|
T Consensus 173 ~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~--~~~~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~ 250 (316)
T PRK11085 173 EALSTLAELEDIGWKVRLCLMDTQRALNFLVRK--ARLPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINI 250 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3335566666666666666554443 22211 112222334556666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCc
Q 008601 439 RVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPY 476 (560)
Q Consensus 439 ~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~py 476 (560)
+.=.++-++|++-......|=+-|+ | ||=.-. -|.
T Consensus 251 ~~N~~mk~lTv~s~if~pptliagi-y-GMNf~~-mP~ 285 (316)
T PRK11085 251 EQNRIIKIFSVVSVVFLPPTLVASS-Y-GMNFEF-MPE 285 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-c-ccccCC-CCC
Confidence 6666666666666666666666665 3 355444 453
No 9
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=95.00 E-value=2.7 Score=44.41 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHH
Q 008601 325 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR 401 (560)
Q Consensus 325 ~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~ 401 (560)
+.+.+..-++++|+++-.=. + ..+...-.....++..+++.+.-.+..+..+.+ .+........-.+..
T Consensus 148 i~d~~~~~le~i~~~~~~ie---~-----~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~ 219 (322)
T COG0598 148 IVDNYFPVLEQIEDELEAIE---D-----QLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDR 219 (322)
T ss_pred HHHhhHHHHHHHHHHHHHHH---H-----HHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHH
Confidence 45666666666666654321 1 001111123566667777777666666554432 332222223445666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC
Q 008601 402 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTP 475 (560)
Q Consensus 402 d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~p 475 (560)
+.++.+.+++.++.+++..+.+...+++.+.++.-.|+.=.++-++|++-..+.-.|=+.|. | ||=.-. -|
T Consensus 220 ~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagi-y-GMNf~~-mP 290 (322)
T COG0598 220 EYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGF-Y-GMNFKG-MP 290 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcc-c-ccCCCC-Cc
Confidence 77777777778888888888887777777777777777777777888777777777777775 4 365554 45
No 10
>PRK09546 zntB zinc transporter; Reviewed
Probab=94.02 E-value=7.6 Score=40.87 Aligned_cols=124 Identities=11% Similarity=0.035 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 356 LNQEIRRLSRQVIRVKWSLHAREEI----VFE-LYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVR 430 (560)
Q Consensus 356 ~l~~I~~LRr~li~Lrr~L~~~rev----l~~-L~~~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~vs 430 (560)
+.+++..+|+.+...+..+...... +.. ....+. +....+..+.+.+..+.+.+..+.+...++. .+.+
T Consensus 187 lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~~~l~--Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~---s~~~- 260 (324)
T PRK09546 187 LRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDRRRMQ--DIADRLGRGLDDLDACIARTAVLADEIASVM---AEAM- 260 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-
Confidence 5678889999988888887554321 111 111221 2333344444555555555555555444333 3343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 008601 431 AWLQDRSLRVTHNLAVFGGCGVVLTVITGLF--GINVDGIPGADNTPYAFGLFTAILFFIGVV 491 (560)
Q Consensus 431 ~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiy--GMNF~~MPel~~~pyGy~i~l~imvlia~v 491 (560)
|+..++|+++|++.+...-+|=|-|+= ||=+-+-|.. +++...+.+++++++...
T Consensus 261 ----N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~g--y~~~l~im~~i~~~~~~~ 317 (324)
T PRK09546 261 ----NRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFG--FSIFCLLLVVLIGGVAWW 317 (324)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcCCcch--HHHHHHHHHHHHHHHHHH
Confidence 667889999999999999999999975 7998878753 555554444444444443
No 11
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=93.68 E-value=3.6 Score=42.83 Aligned_cols=122 Identities=11% Similarity=0.006 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 356 LNQEIRRLSRQVIRVKWSLHAREEI--V----FELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV 429 (560)
Q Consensus 356 ~l~~I~~LRr~li~Lrr~L~~~rev--l----~~L~~~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~v 429 (560)
+.+++..+|+.+...+..+.....- + ......+. +....+..+.+.+..+-+.++.+.+...++.+ +.+
T Consensus 180 l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~--dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s---~~~ 254 (318)
T TIGR00383 180 LRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLR--DIYDHILSLLEMIETYRELLSSLMDLYLSLVN---NKM 254 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3456667777777666666443321 1 11111121 22233444555555555555555554444332 232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCCCCCCCCchHHHHHHHHHHHH
Q 008601 430 RAWLQDRSLRVTHNLAVFGGCGVVLTVITGLF--GINVDGIPGADNTPYAFGLFTAILFFIG 489 (560)
Q Consensus 430 s~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiy--GMNF~~MPel~~~pyGy~i~l~imvlia 489 (560)
|+.-+++-++|++-+...-++=|-|+= ||=+-+.|.. +++...+.+++++++.
T Consensus 255 -----N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~g--y~~~l~~m~~i~~~~~ 309 (318)
T TIGR00383 255 -----NEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYG--YPAVLIVMAVIALGPL 309 (318)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchhH--HHHHHHHHHHHHHHHH
Confidence 445556667777777777777777763 4665444432 4555544444444433
No 12
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=93.62 E-value=13 Score=41.18 Aligned_cols=184 Identities=17% Similarity=0.221 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 008601 308 EVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSL---HAREEIVFEL 384 (560)
Q Consensus 308 ~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L---~~~revl~~L 384 (560)
..+..|.-=++....+ .+..+|.++..|-.++-......+ .++.+|..|-.++-.+.-.. ..--.++..+
T Consensus 201 R~mALL~LP~Ar~~~~-~L~~~E~~L~~l~~~~~~~~~~~~------~LL~~Lt~LAa~vE~~~a~t~~RF~As~AY~~i 273 (420)
T PF11902_consen 201 RMMALLGLPVARELSP-ELSELEQRLAALTQRMASSEDTDD------ELLDELTRLAAEVEALAARTSYRFSASRAYYEI 273 (420)
T ss_pred HHHHHccCHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 3444444456666667 788889999888888887743332 35667777777665552221 0111222322
Q ss_pred Hh---------hhc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH
Q 008601 385 YQ---------HLR-----GNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV-----------------RAWL 433 (560)
Q Consensus 385 ~~---------~l~-----~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~v-----------------s~~~ 433 (560)
.. .+. .+-....|.-...-|..+.+.++.+.+++....+...+.+ ++.+
T Consensus 274 V~~RL~eLrE~~i~g~~tl~eF~~RRl~PAmrTC~a~~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rRa~l 353 (420)
T PF11902_consen 274 VEQRLAELREERIPGYQTLSEFLERRLTPAMRTCEAVERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRRARL 353 (420)
T ss_pred HHHHHHHhcccccCCCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111 1111112222222222233333333333222222222222 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008601 434 QDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK 503 (560)
Q Consensus 434 n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k 503 (560)
+-++-++.--|+|+++-.= +.|+.|.=++++.... +|+.--++.++++-++++.+|+++.+++.+
T Consensus 354 QLrLQqtVEGLSVvAIsYY----~vgL~~y~~k~l~~~g-~~~~~~l~~g~~vP~v~~~vw~~~rrir~~ 418 (420)
T PF11902_consen 354 QLRLQQTVEGLSVVAISYY----VVGLLGYLLKGLKAAG-LPVDPELATGLAVPVVLLAVWLGVRRIRRR 418 (420)
T ss_pred HHHHHHHhhhHHHHHHHHH----HHHHHHHHHhhHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666677777888876553 5567777778888877 788777788888888888888888887654
No 13
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.22 E-value=0.96 Score=43.78 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhH
Q 008601 442 HNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQ 510 (560)
Q Consensus 442 K~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~ 510 (560)
++.+++.+|...+-+++|+-|-=|. .|++. ..+.+. +.+++++++++++..|+.++..+++.....
T Consensus 5 ~i~~i~~iilgilli~~gI~~Lv~~-~~~l~-~~~s~~-lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~ 70 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAALVLF-ISGLG-ALISFI-LGIALLALGVVLLSLGLLCLLSKRPVQSVR 70 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHccccccch
Confidence 4556666666666667777775443 34444 222222 222345567888899999998888875533
No 14
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=90.23 E-value=32 Score=37.71 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 008601 401 RKNAREMIEEQEAVRGRLFTIQ-DVMQSTVR----------AWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIP 469 (560)
Q Consensus 401 ~d~~~rlle~lealre~l~~L~-D~~~S~vs----------~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MP 469 (560)
+++++.+.|.+++++.++..|- ...+..+. ..+..-+|- .||+++++ |.||+.+.| |. +|
T Consensus 297 ~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inl---lL~l~~vl---Lv~vSt~~~--~~-~P 367 (395)
T PF10267_consen 297 YERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINL---LLTLLTVL---LVFVSTVAN--CP-LP 367 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHH---HHHHHHHH---HHHHHHHhc--CC-cH
Confidence 5667777777777777777665 11111110 112222332 33444444 444444443 45 99
Q ss_pred CCCCCCchHHHH
Q 008601 470 GADNTPYAFGLF 481 (560)
Q Consensus 470 el~~~pyGy~i~ 481 (560)
.+. +++-...+
T Consensus 368 l~~-tR~r~~~t 378 (395)
T PF10267_consen 368 LTR-TRLRTLTT 378 (395)
T ss_pred Hhh-ccHHHHHH
Confidence 999 88655433
No 15
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=89.35 E-value=5.8 Score=35.50 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008601 445 AVFGGCGVVLTVITGLFGINVDGIPGAD-NTPYAFGLFTAILFFIGVVLIAVGLLYLGL 502 (560)
Q Consensus 445 TVvSaIFLPLTfIaGiyGMNF~~MPel~-~~pyGy~i~l~imvlia~vl~~~~l~y~~~ 502 (560)
.+++++|+-..++...++..+--.|... +..+|++++.++.+++++++++++...+..
T Consensus 41 ~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la~i~~~~~~~~l~~ 99 (121)
T PF07332_consen 41 LVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLALILLLIGRRRLRR 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444443112111 023578888888888888888888887764
No 16
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=85.26 E-value=46 Score=33.79 Aligned_cols=35 Identities=3% Similarity=0.028 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-c-cCCCCCC
Q 008601 435 DRSLRVTHNLAVFGGCGVVLTVITGLF-G-INVDGIP 469 (560)
Q Consensus 435 ~r~N~vMK~LTVvSaIFLPLTfIaGiy-G-MNF~~MP 469 (560)
.+++..++-++.+-.||+--++|.-+- + |+|=|+|
T Consensus 145 k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 145 KRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 345555555555555555444443221 3 5665554
No 17
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=81.14 E-value=5.4 Score=39.42 Aligned_cols=52 Identities=29% Similarity=0.325 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ChhHHHHHHHHHHHHHHHHHHH
Q 008601 360 IRRLSRQVIRVKWSLHAREEIVFELYQHLR-----GNVARTLLEGIRKNAREMIEEQ 411 (560)
Q Consensus 360 I~~LRr~li~Lrr~L~~~revl~~L~~~l~-----~~~~~~~L~dI~d~~~rlle~l 411 (560)
+.++++++..-...-...++++.+++.++. +..++..|.+....+.++++..
T Consensus 10 ~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQk~G~tA~~lfG~P~~~a~eli~~~ 66 (206)
T PF06570_consen 10 IFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQKKGKTARQLFGDPKEYADELIKPL 66 (206)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHcCCHHHHHHHHhccc
Confidence 445555553333334455556666665432 4456677777777777776643
No 18
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.87 E-value=70 Score=36.22 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 392 VARTLLEGIRKNAREMIEEQEAVRGR 417 (560)
Q Consensus 392 ~~~~~L~dI~d~~~rlle~lealre~ 417 (560)
...++++|..+|+...++.=|.+.|-
T Consensus 116 ~~~~~l~dfL~Rla~ai~sGe~~~eF 141 (527)
T COG1955 116 TPSEILADFLDRLAYALDSGEDLKEF 141 (527)
T ss_pred CcHHHHHHHHHHHHHhhhcCCcHHHH
Confidence 34556777777777666544444333
No 19
>COG3462 Predicted membrane protein [Function unknown]
Probab=73.87 E-value=9.9 Score=34.23 Aligned_cols=61 Identities=21% Similarity=0.426 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHh--hcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhccCCcc
Q 008601 444 LAVFGGCGVVLTVITG--LFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLY-LGLKKPIT 507 (560)
Q Consensus 444 LTVvSaIFLPLTfIaG--iyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y-~~~k~~~~ 507 (560)
.++++++.+.++.+.| +|-||.-+|-+. -||+|+++-+|.+++++.+.+-+.| ++.-++.+
T Consensus 16 iavi~~v~li~~~~~gg~~y~~gy~gm~GG---~yGm~lImpI~~~vvli~lvvfm~~~~g~~r~~~ 79 (117)
T COG3462 16 IAVIAVVGLIPSGFHGGAFYPGGYRGMMGG---LYGMWLIMPIFWAVVLIFLVVFMFYILGAVRRGS 79 (117)
T ss_pred HHHHHHHHHhhcccccCcccCCCccccccc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4555555555555544 444665445443 4677777766655555443333333 34444443
No 20
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=71.26 E-value=32 Score=37.21 Aligned_cols=88 Identities=11% Similarity=0.211 Sum_probs=57.9
Q ss_pred HHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHH
Q 008601 332 AADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQ 411 (560)
Q Consensus 332 ~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~l~~~~~~~~L~dI~d~~~rlle~l 411 (560)
.+|+||+.+-.+....| .+.++|...|..++-+|-.+...-..+..+. ++.+....+.|-.|.+++.++.+.+
T Consensus 9 ~LeeLe~kLa~~d~~Kd------~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie-~~~~~s~qeKFl~IR~KlleL~~~l 81 (379)
T PF11593_consen 9 KLEELEEKLASNDNSKD------SVMDKISEAQDSILPLRLQFNEFIQTMANIE-EMNNKSPQEKFLLIRSKLLELYNKL 81 (379)
T ss_pred cHHHHHHHHhcCCchHH------HHHHHHHHHHhccccHHHHHHHHHHHHHHhh-cccccCHHHHHHHHHHHHHHHHHHH
Confidence 57788888875443222 3567888888888877766554444444432 3444456667778888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 008601 412 EAVRGRLFTIQDVMQ 426 (560)
Q Consensus 412 ealre~l~~L~D~~~ 426 (560)
+.+..-...|+=.+.
T Consensus 82 Q~lS~df~~LqPLF~ 96 (379)
T PF11593_consen 82 QELSSDFQKLQPLFD 96 (379)
T ss_pred HHHHHHHHHhchHHh
Confidence 888776666654443
No 21
>COG5487 Small integral membrane protein [Function unknown]
Probab=69.79 E-value=9.3 Score=29.81 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCC
Q 008601 447 FGGCGVVLTVITGLFGINVDGIPGAD 472 (560)
Q Consensus 447 vSaIFLPLTfIaGiyGMNF~~MPel~ 472 (560)
++.||+...+|+|.+| |.|+-+..
T Consensus 4 waliFlvialIa~~lG--FgGiagaa 27 (54)
T COG5487 4 WALIFLVIALIAGALG--FGGIAGAA 27 (54)
T ss_pred HHHHHHHHHHHHHHhC--cccHHHHH
Confidence 6889999999999999 67777665
No 22
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=69.57 E-value=4 Score=41.90 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcccCCCCCCCCC--CC--CchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008601 438 LRVTHNLAVFGGCGVVLTVITG-LFGINVDGIPGAD--NT--PYAFGLFTAILFFIGVVLIAVGLLYLGLK 503 (560)
Q Consensus 438 N~vMK~LTVvSaIFLPLTfIaG-iyGMNF~~MPel~--~~--pyGy~i~l~imvlia~vl~~~~l~y~~~k 503 (560)
++|.=+++-++.-+.|++-=.- |||||+..=|-.. +| .|+||+++++++++-+++.+.+.+|+.+|
T Consensus 178 enVTVvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 178 SKISILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYQLMLSLTGLLLGVGILIGYFCLRRR 248 (249)
T ss_pred cceEEEecCCccccCCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444445556544443 8999998544331 02 56788888888877788888888887665
No 23
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=66.71 E-value=32 Score=33.34 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 008601 441 THNLAVFGGCGVVLTVITGLFGINVDGIPGAD 472 (560)
Q Consensus 441 MK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~ 472 (560)
||.|..+.+ |+|...+++= | +||.++
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~-g----~~~~~~ 26 (184)
T PRK13455 1 MKLLSALAA-LAASPALAAG-G----PFFSLS 26 (184)
T ss_pred CchHHHHHH-HccchHhhcC-C----CCCCCc
Confidence 556665544 4666666662 2 467666
No 24
>PRK13682 hypothetical protein; Provisional
Probab=66.09 E-value=5 Score=31.32 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHH
Q 008601 447 FGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLF 481 (560)
Q Consensus 447 vSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~ 481 (560)
++.+|+...+|+|++| |.|+-+.. ..-+.+++
T Consensus 4 waliFliiA~iA~~lG--F~GiAg~a-a~iAkiLF 35 (51)
T PRK13682 4 WAIIFLVIALIAAVLG--FGGIAGAA-AGIAKILF 35 (51)
T ss_pred HHHHHHHHHHHHHHhc--cchHHHHH-HHHHHHHH
Confidence 6889999999999999 56666554 34444333
No 25
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=66.07 E-value=23 Score=30.79 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCCCCCCc
Q 008601 485 LFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGD 549 (560)
Q Consensus 485 mvlia~vl~~~~l~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (560)
.++++++..++|.+||..++--.+.+-.-...+-+.-.+.=...+=+|+++|+....+.+.++.|
T Consensus 8 ~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~ 72 (87)
T PF10883_consen 8 GGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRD 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHH
Confidence 34445555666777776665444422222222222223333344446788887665333333333
No 26
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=64.69 E-value=63 Score=29.07 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHH
Q 008601 448 GGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAIL 485 (560)
Q Consensus 448 SaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~im 485 (560)
+-|..=..+++++.|.|.-..+...-.||.|.+...+.
T Consensus 5 ~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~l 42 (108)
T PF06210_consen 5 TFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVL 42 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHH
Confidence 34455567788899999876665332577775544433
No 27
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=64.27 E-value=39 Score=33.08 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 008601 446 VFGGCGVVLTVITGLFGIN 464 (560)
Q Consensus 446 VvSaIFLPLTfIaGiyGMN 464 (560)
+++++.+-++++++++|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 12 ILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5555666666666666654
No 28
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=62.61 E-value=3.4e+02 Score=32.60 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC---CCchHHHHHH--HHHHHHHHHHHHHHHHh
Q 008601 438 LRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADN---TPYAFGLFTA--ILFFIGVVLIAVGLLYL 500 (560)
Q Consensus 438 N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~---~pyGy~i~l~--imvlia~vl~~~~l~y~ 500 (560)
+-+.-.+.++-++|+-+.++-|++|-.=...|.... ..-|.+++++ ++++++.++++++++||
T Consensus 417 ~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~F 484 (806)
T PF05478_consen 417 GLILCCVLLLIVLCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYF 484 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556777799999999976655664431 2334444333 34555566666666666
No 29
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.51 E-value=3.1e+02 Score=31.85 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-hhH---HHHHHHHH
Q 008601 326 RKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRG-NVA---RTLLEGIR 401 (560)
Q Consensus 326 le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~l~~-~~~---~~~L~dI~ 401 (560)
+..++.++++|+.++..-+..++. ..+..++-.+++++-.+..-+.....-+..+...+.. ... ......-.
T Consensus 400 ~~~~e~el~~l~~~l~~~~~~e~i----~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 475 (650)
T TIGR03185 400 LRELEEELAEVDKKISTIPSEEQI----AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA 475 (650)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888999999988876543332 2234455555555555554444444434333321100 000 00111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 402 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNL 444 (560)
Q Consensus 402 d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~L 444 (560)
....+.++..+.+++.+..+.+.........+...+|++.+.|
T Consensus 476 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l 518 (650)
T TIGR03185 476 FELERAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKL 518 (650)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666665555555544444556666655444
No 30
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=59.74 E-value=1.7e+02 Score=28.25 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 008601 404 AREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGAD 472 (560)
Q Consensus 404 ~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~ 472 (560)
..++.++++...+++......|...+ ..-|..+ --.|-++++|++|+ +-+|..+
T Consensus 120 ~~~l~~~l~~~E~~I~~aR~~YN~av-----~~yN~~i--------~~FP~~lvA~~~gf--~~~~~f~ 173 (186)
T PF04011_consen 120 FQQLMAQLEETENRIAAARRAYNDAV-----RDYNTAI--------RQFPTNLVAGIFGF--KPKEYFE 173 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-----------------------------S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--------HhccHHHHHHhcCC--CcCCCcc
Confidence 45556666666677777777777776 4455422 23799999999995 4455443
No 31
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=57.56 E-value=1.2e+02 Score=33.41 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhcccCCCCCCCCC
Q 008601 450 CGVVLTVITGLFGINVDGIPGAD 472 (560)
Q Consensus 450 IFLPLTfIaGiyGMNF~~MPel~ 472 (560)
+|+.|.|..-+=|||-. +|.+.
T Consensus 182 ~~VvP~f~~if~~~~~~-LP~lT 203 (397)
T COG1459 182 IFVVPQFAEIFESLGAE-LPALT 203 (397)
T ss_pred HHHhccHHHHHhhcCCC-CcHHH
Confidence 45667777767778877 88665
No 32
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=56.85 E-value=35 Score=29.80 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc--CCCCCCCCCCCCchHHHHH
Q 008601 440 VTHNLAVFGGCGVVLTVITGLFGI--NVDGIPGADNTPYAFGLFT 482 (560)
Q Consensus 440 vMK~LTVvSaIFLPLTfIaGiyGM--NF~~MPel~~~pyGy~i~l 482 (560)
+.+.++.++...++..++||+|-+ .++.-+... ++||-++.+
T Consensus 3 ~~~rFs~~a~~av~~l~~TG~~~a~~~~~~~~l~~-t~yG~~Ll~ 46 (105)
T PF05425_consen 3 VLRRFSWIAWAAVAVLVVTGLVMAWLRLGFDALFT-TPYGRLLLV 46 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhcc-ChhHHHHHH
Confidence 456678888888889999998875 323112233 688865443
No 33
>PF13994 PgaD: PgaD-like protein
Probab=56.54 E-value=27 Score=32.45 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=44.1
Q ss_pred HHHH-HHHHHhhcccCCCC--CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc--CCcchhHHHH-HHHHHHHHHH
Q 008601 450 CGVV-LTVITGLFGINVDG--IPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK--KPITEEQVEV-RKLELQELVK 523 (560)
Q Consensus 450 IFLP-LTfIaGiyGMNF~~--MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k--~~~~~~~~~~-~~~~~~~~~~ 523 (560)
++.| +|++.+++|.+..+ |+ .. ..-+....+.+-++++++..++.+.|.... |.-.++.... .....+|+-+
T Consensus 31 L~~pl~~ll~~ll~~~~~~~~~~-~~-~~~~~~~~l~~y~~i~~~~a~~Li~Wa~yn~~Rf~~~~rr~~~~~~~~~elA~ 108 (138)
T PF13994_consen 31 LWRPLLTLLAWLLGLHLFYPQMS-LG-GFLSSLNTLQIYLLIALVNAVILILWAKYNRLRFRGRRRRRRPPPVSDEELAR 108 (138)
T ss_pred HHHHHHHHHHHHHccccccchhh-hc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccCCCCCCHHHHHH
Confidence 4556 57888999998763 32 22 112222222222222222223333333222 2222222221 1166778888
Q ss_pred HhHHHHHHHHHHhhh
Q 008601 524 KFQHEAETHAQVRKN 538 (560)
Q Consensus 524 ~~~~~~~~~~~~~~~ 538 (560)
.|+=.++.=+|+|+.
T Consensus 109 ~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 109 SFGLSPEQLQQLRQA 123 (138)
T ss_pred HcCCCHHHHHHHHhC
Confidence 898888888888774
No 34
>COG4420 Predicted membrane protein [Function unknown]
Probab=55.76 E-value=74 Score=31.48 Aligned_cols=94 Identities=19% Similarity=0.147 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 008601 442 HNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQEL 521 (560)
Q Consensus 442 K~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~~~~~~~~~~~~ 521 (560)
+++..++.|+.=..++.-+-+.|....|+....||-|.+.=++.-++++ +.--++ +--.+.-++.+-..-+.++|--
T Consensus 53 ~f~Gsw~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~Aa--iqAp~I-lmSQNRQa~rDr~~a~~d~qvn 129 (191)
T COG4420 53 RFGGSWAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAA--IQAPLI-LMSQNRQAERDRLRAELDYQVN 129 (191)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHH--HHHhHH-HHHHhHHHHHHHHHHHHHHHHH
Confidence 3555566666666666667778998888766457777554333332222 222222 2233344555555556666655
Q ss_pred HHHhHHHHHHHHHHhhh
Q 008601 522 VKKFQHEAETHAQVRKN 538 (560)
Q Consensus 522 ~~~~~~~~~~~~~~~~~ 538 (560)
.+-=|.-+.-|+++.+-
T Consensus 130 lkaE~e~~~l~~kLd~l 146 (191)
T COG4420 130 LKAEQEVAALHEKLDEL 146 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555566666443
No 35
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.79 E-value=14 Score=29.65 Aligned_cols=18 Identities=33% Similarity=0.661 Sum_probs=8.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q 008601 476 YAFGLFTAILFFIGVVLI 493 (560)
Q Consensus 476 yGy~i~l~imvlia~vl~ 493 (560)
...++++++++++|+++.
T Consensus 18 ~pl~l~il~~f~~G~llg 35 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLG 35 (68)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 444444445555554443
No 36
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=54.09 E-value=18 Score=31.36 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCC
Q 008601 442 HNLAVFGGCGVVLTVITGLFGINV 465 (560)
Q Consensus 442 K~LTVvSaIFLPLTfIaGiyGMNF 465 (560)
++|++++.++.-+..+.+++...+
T Consensus 6 ~iL~~Ig~il~il~~~~~l~~~~~ 29 (100)
T PF13273_consen 6 KILGWIGGILGILFGFFGLLIGFF 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567877777766655555544444
No 37
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=54.05 E-value=58 Score=29.87 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHH
Q 008601 443 NLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 522 (560)
Q Consensus 443 ~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~~~~~~~~~~~~~ 522 (560)
.+-++|=|+.|..+.+|+-.+-|- ..+.+.+.++..+.|.+.|+..+.|...+++.-.|.-++|.-
T Consensus 39 LfvifSPVlVPaai~~~l~~~Gfl--------------~sg~~g~~~ls~lsW~~~y~rg~~~~~~~q~d~Ak~ri~d~a 104 (118)
T PF01277_consen 39 LFVIFSPVLVPAAIAIGLAVAGFL--------------TSGAFGLTALSSLSWMYNYFRGRHPPGPDQLDYAKRRIADTA 104 (118)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHHHHhccCCCCCCccHHHHHHHHHHHH
Confidence 455666677777777766554442 222223334456677889999999998888887777666654
Q ss_pred HH
Q 008601 523 KK 524 (560)
Q Consensus 523 ~~ 524 (560)
+.
T Consensus 105 ~~ 106 (118)
T PF01277_consen 105 SY 106 (118)
T ss_pred HH
Confidence 43
No 38
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=52.64 E-value=32 Score=29.11 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=15.6
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHH
Q 008601 468 IPGADNTPYAFGLFTAILFFIGVVL 492 (560)
Q Consensus 468 MPel~~~pyGy~i~l~imvlia~vl 492 (560)
+.... +|.|||+..-..+++-+++
T Consensus 35 ~~~~G-fPlgfw~aaQGsi~~fviL 58 (77)
T TIGR03647 35 FTFFG-FPLGFWFAQQGSIYVFVVL 58 (77)
T ss_pred CeeCC-CChHHHHHHhhHHHHHHHH
Confidence 44556 9999998766655544433
No 39
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=52.56 E-value=83 Score=34.40 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHH
Q 008601 444 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKL 516 (560)
Q Consensus 444 LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~~~~~~~ 516 (560)
+.+++++++.+.++..++.+.+..+. ++..+.+++++++++.++++++.....+..|.+-.+.+..
T Consensus 400 ~~~~~~i~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~T~~G~~~~~~ 465 (511)
T PF09972_consen 400 LIILGIILLILGFILLIVLFIAFNSL-------IFIALGILSIVLIIIGIIALIIFYKVMPRRTPEGAELYAQ 465 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHH
Confidence 66666666666666665555443111 1111222222222223333333444455577776665544
No 40
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=52.22 E-value=19 Score=41.59 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHH
Q 008601 443 NLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAI 484 (560)
Q Consensus 443 ~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~i 484 (560)
.+.+.++-++|.+++.+.++-.+. .... |.|+||+.+++
T Consensus 167 ~~~~~~~~~i~~~~~~~~ia~~~~--~~~~-WRw~~~~~~i~ 205 (599)
T PF06609_consen 167 GLAIASIPFIITTWISPLIAQLFA--AHSG-WRWIFYIFIIW 205 (599)
T ss_pred HhHHHHHHHHhhhcccHHHHHHhc--cCCC-cchHHHHHHHH
Confidence 345666677788888888887764 2345 99999877554
No 41
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=51.28 E-value=44 Score=31.16 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 008601 476 YAFGLFTAILFFIGVVLIAVGLLYLGLKK 504 (560)
Q Consensus 476 yGy~i~l~imvlia~vl~~~~l~y~~~k~ 504 (560)
+|||+++++++++.++.++...++...++
T Consensus 21 ~GWwll~~lll~~~~~~~~~~~r~~~~~~ 49 (146)
T PF14316_consen 21 PGWWLLLALLLLLLILLLWRLWRRWRRNR 49 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 68888777766666655555555554443
No 42
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=50.96 E-value=28 Score=40.55 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=20.1
Q ss_pred cccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008601 461 FGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVG 496 (560)
Q Consensus 461 yGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~ 496 (560)
.|.|+.++|..- ....|.+.++.+.++ ..++|++
T Consensus 571 lG~Nl~~l~~~~-~~~~F~~~l~ai~gl-f~~Yw~~ 604 (636)
T PF05817_consen 571 LGANLSNLPFSP-SAILFHGGLGAIEGL-FFLYWLG 604 (636)
T ss_pred cCcchhhCCCCc-hHHHHHHHHHHHHHH-HHHHHHh
Confidence 388999999877 555555554444432 2334443
No 43
>COG3771 Predicted membrane protein [Function unknown]
Probab=50.79 E-value=56 Score=28.48 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=26.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHH
Q 008601 475 PYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQ 519 (560)
Q Consensus 475 pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~~~~~~~~~~ 519 (560)
.-+-.+.++..+.++.+.+++|+.|++.|-..-.-..|+.++|.|
T Consensus 40 ~LSTLla~lF~~G~~lgwli~g~fy~k~~l~~~~l~rqiKr~~~q 84 (97)
T COG3771 40 RLSTLLATLFAAGFALGWLICGLFYLKVRLSLMRLERQIKRLENQ 84 (97)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444445555666778999998776655555555555443
No 44
>COG3462 Predicted membrane protein [Function unknown]
Probab=50.77 E-value=77 Score=28.73 Aligned_cols=69 Identities=10% Similarity=-0.046 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008601 434 QDRSLRVTHNLAVFGGCGVVLTVI-TGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK 503 (560)
Q Consensus 434 n~r~N~vMK~LTVvSaIFLPLTfI-aGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k 503 (560)
+.+.|+..-+|-=+-++.....++ .|+||=-|-.+|.-. ---||+..+++|-+++++.+++.++.++..
T Consensus 2 dk~ven~~w~ligliavi~~v~li~~~~~gg~~y~~gy~g-m~GG~yGm~lImpI~~~vvli~lvvfm~~~ 71 (117)
T COG3462 2 DKKVENFAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRG-MMGGLYGMWLIMPIFWAVVLIFLVVFMFYI 71 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccCCCccc-cccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555555555555 466775555344332 334677788888888888888888877754
No 45
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=50.49 E-value=65 Score=28.04 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhH
Q 008601 434 QDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQ 510 (560)
Q Consensus 434 n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~ 510 (560)
++..|+.++.+.+..+++.-+.++.... |...+++.+++.++-++|=.++..++|-+=++
T Consensus 16 ~~~~n~~lH~igvp~~~~~~~~~~~~~~-----------------~~~~l~~~~~g~~~q~~GH~~~E~~~Pa~~~~ 75 (95)
T PF06127_consen 16 RNPINRALHFIGVPLIIFSLLLLLARIP-----------------WWLALAVFVVGWGLQFIGHFFFEKNKPAFFDN 75 (95)
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHcc-----------------HHHHHHHHHHHHHHHHHhHHHHHcCCCcchhc
Confidence 4567776666555444443333322211 33444556667778888888899999976554
No 46
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=50.42 E-value=3.4e+02 Score=30.24 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHH
Q 008601 439 RVTHNLAVFGGCGVVLTV-ITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKL 516 (560)
Q Consensus 439 ~vMK~LTVvSaIFLPLTf-IaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~~~~~~~ 516 (560)
..|+.+..+-++++|+.+ +.|++| + || -|-.+.|++.-+.+++--++....+..+-|++++=-+-+..
T Consensus 221 ~~~~k~m~~m~~~~Pim~~~~g~~~-~---~P------aallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~~~~~ 289 (429)
T PRK00247 221 VGMLKFLIVMAILAPIFPLSLGLTG-P---FP------TAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKEHHAE 289 (429)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc-c---ch------HHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 346666666677888655 557777 2 33 23222222333334444444444455555666654444444
No 47
>PRK11677 hypothetical protein; Provisional
Probab=50.13 E-value=58 Score=30.47 Aligned_cols=52 Identities=31% Similarity=0.412 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc---CCcchhHHHHHHHHH----HHHHHHhHHHHH
Q 008601 479 GLFTAILFFIGVVLIAVGLLYLGLK---KPITEEQVEVRKLEL----QELVKKFQHEAE 530 (560)
Q Consensus 479 ~i~l~imvlia~vl~~~~l~y~~~k---~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 530 (560)
|+++++.+++++++-+++.++...+ .--.+++.+--|.|| |++..-|-+.|+
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~ 61 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFARSAE 61 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544554443211 112456666666666 345555544444
No 48
>COG4949 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=49.26 E-value=3.6e+02 Score=28.88 Aligned_cols=68 Identities=18% Similarity=0.029 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 008601 433 LQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI 506 (560)
Q Consensus 433 ~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~ 506 (560)
++-++..+..-|+|+++ --.+.|++|-=-| |..+.||.+--+++++.+=++++.+|+++.++.+|+-.
T Consensus 353 lQlrLQqtVEGLSvaAv----sYYVvGLiGYl~K--~~sh~~p~~pevvt~~~VP~av~~vw~~vrRiRr~h~e 420 (424)
T COG4949 353 LQLRLQQTVEGLSVAAV----SYYVVGLIGYLAK--AWSHGWPVDPEVVTGGSVPFAVLGVWWVVRRIRRKHLE 420 (424)
T ss_pred HHHHHHHHhccceehhh----hHHHHHHHHHHHH--HHHhCCCCChhHhhccchhHHHHHHHHHHHHHHHhhcc
Confidence 44555555555666544 4466788887554 44455888888999999999999999999888777644
No 49
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=47.87 E-value=1.2e+02 Score=24.93 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 008601 510 QVEVRKLELQELVKKFQHEAETHA 533 (560)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~ 533 (560)
-|.-||.=|++.-.+-+++|.-++
T Consensus 37 sv~qrr~iL~~v~r~~aReaR~~~ 60 (67)
T COG3114 37 SVLQRRAILRGVARQRAREARLRA 60 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788889998888888876554
No 50
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.14 E-value=46 Score=37.21 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 008601 439 RVTHNLAVFGGCGVVLTVITGLFGINVDG 467 (560)
Q Consensus 439 ~vMK~LTVvSaIFLPLTfIaGiyGMNF~~ 467 (560)
.+.-+++|+..+..|||++.|+.|=|-++
T Consensus 398 t~v~v~~iw~fv~~PL~~~G~i~GkN~~~ 426 (593)
T KOG1277|consen 398 TIVVVLLIWLFVISPLTVLGGIAGKNRSG 426 (593)
T ss_pred chHHHHHHHHHHhchHHHccccccccccc
Confidence 34567899999999999999999999654
No 51
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=46.19 E-value=48 Score=28.40 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=13.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHH
Q 008601 470 GADNTPYAFGLFTAILFFIGVV 491 (560)
Q Consensus 470 el~~~pyGy~i~l~imvlia~v 491 (560)
... +|.|||+..=..+++-++
T Consensus 41 ~~G-fPlgfw~aaQGsi~~fvi 61 (81)
T PF13937_consen 41 FGG-FPLGFWFAAQGSIIVFVI 61 (81)
T ss_pred eCC-CChHHHHHHHhHHHHHHH
Confidence 445 899999876655544433
No 52
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=45.14 E-value=2.4e+02 Score=26.14 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=6.6
Q ss_pred HHHHHhhcccC
Q 008601 454 LTVITGLFGIN 464 (560)
Q Consensus 454 LTfIaGiyGMN 464 (560)
.++++|+||-.
T Consensus 91 ~~~~~~~~~~~ 101 (142)
T PF11712_consen 91 AVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHH
Confidence 45666666654
No 53
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=44.91 E-value=1e+02 Score=27.77 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-CCcc--hhHHHHHHHHHHHHHHHhH
Q 008601 478 FGLFTAILFFIGVVLIAVGLLYLGLK-KPIT--EEQVEVRKLELQELVKKFQ 526 (560)
Q Consensus 478 y~i~l~imvlia~vl~~~~l~y~~~k-~~~~--~~~~~~~~~~~~~~~~~~~ 526 (560)
||+++++|++++++++++-+++-... .... ..+..+=|..|.|+-.--.
T Consensus 2 fWl~~a~l~~~a~~~v~~pl~r~~~~~~~~~~~~~n~~iyr~qL~ELe~d~~ 53 (117)
T TIGR03142 2 FWIVAALLTLVALLFLLLPLLRRRRAAATVDRDELNLAVYRDRLAELERDLA 53 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887776665554444331111 1232 2355666666777766544
No 54
>PRK07668 hypothetical protein; Validated
Probab=44.41 E-value=82 Score=32.59 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhcccC
Q 008601 444 LAVFGGCGVVLTVITGLFGIN 464 (560)
Q Consensus 444 LTVvSaIFLPLTfIaGiyGMN 464 (560)
++++..+..|+.++.|+.|-+
T Consensus 105 ~s~~~iig~~~~~~l~i~~~~ 125 (254)
T PRK07668 105 YSLIQLIGYPISLILTIIGLI 125 (254)
T ss_pred eeehHHhhHHHHHHHHHHHHH
Confidence 566666777777777777644
No 55
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=44.14 E-value=3.1e+02 Score=26.59 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hccCCcchhHHHHHHH
Q 008601 443 NLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL-GLKKPITEEQVEVRKL 516 (560)
Q Consensus 443 ~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~-~~k~~~~~~~~~~~~~ 516 (560)
.|++-.++|+=+|+. .||=|+- .|..|++..+.+ +++..|+ .-++-+|-+++.-|..
T Consensus 101 ~l~~q~~~l~rLTf~--e~sWDvM-------EPVTYfv~~~~~--------i~~y~yfl~t~re~sy~~~~~~~~ 158 (180)
T PF04678_consen 101 LLVVQFGILARLTFW--EYSWDVM-------EPVTYFVGYGTS--------ILGYAYFLYTRREYSYESVFQRRF 158 (180)
T ss_pred HHHHHHHHHHHHHhh--ccccchh-------hhHHHHHhHHHH--------HHHHHHHHHhCCCCChHHHHHHHH
Confidence 344555667777776 7777775 488887554432 2355666 4677778888776655
No 56
>PF14163 SieB: Superinfection exclusion protein B
Probab=43.88 E-value=1.4e+02 Score=27.82 Aligned_cols=40 Identities=10% Similarity=-0.164 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 008601 444 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGV 490 (560)
Q Consensus 444 LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~ 490 (560)
++..+.+|+|-+++..++==+|. ..|++|+.+++.+.++.
T Consensus 7 i~~~~llf~P~~~~~~l~l~~~~-------~~y~~~i~~~fl~s~s~ 46 (151)
T PF14163_consen 7 IFSGLLLFLPESLLEWLNLDKFE-------IKYQPWIGLIFLFSVSY 46 (151)
T ss_pred HHHHHHHHCCHHHHHHhCcchHH-------HhcchHHHHHHHHHHHH
Confidence 44555689999999876433443 45666655554444333
No 57
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=43.46 E-value=4.9e+02 Score=28.71 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008601 401 RKNAREMIEEQEAVRGRLFTI 421 (560)
Q Consensus 401 ~d~~~rlle~lealre~l~~L 421 (560)
++|++.+-|.+++++.++..|
T Consensus 345 yERaRdIqEalEscqtrisKl 365 (455)
T KOG3850|consen 345 YERARDIQEALESCQTRISKL 365 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776654
No 58
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=43.26 E-value=33 Score=31.60 Aligned_cols=53 Identities=23% Similarity=0.435 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 008601 440 VTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL 500 (560)
Q Consensus 440 vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~ 500 (560)
.+-.+.+++.+++-..++.+++|+ - + .++....+.+++.+++++..++++..+
T Consensus 70 ~~~~~~~l~~~~~~~a~~~~~~~~--~-----~-~~~~~~~~~~~~~~~ag~~~l~~l~~~ 122 (172)
T PF13903_consen 70 ATIAFLILGLLLLLFAFVFALIGF--C-----K-RSYTLYLFAGILFILAGLCILIALIVF 122 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--h-----c-cccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556555555555555443 1 2 233433445555556565666665544
No 59
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=43.23 E-value=67 Score=27.35 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=20.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008601 474 TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 505 (560)
Q Consensus 474 ~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~ 505 (560)
.++.+....+++++++++..++......+++|
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~k~~P 121 (121)
T PF02687_consen 90 SPWSFLIVFIIILLISIIASLIPIRRILKINP 121 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34555556666666666666667666666654
No 60
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=42.88 E-value=58 Score=27.36 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=15.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 008601 474 TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI 506 (560)
Q Consensus 474 ~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~ 506 (560)
.||||...+++++ +-.+++-|++=+++.+-+
T Consensus 18 dP~~Fl~~vll~L--tPlfiisa~lSwkLaK~i 48 (74)
T PF15086_consen 18 DPYEFLTTVLLIL--TPLFIISAVLSWKLAKAI 48 (74)
T ss_pred ChHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence 7999976544332 222333444444444444
No 61
>COG1422 Predicted membrane protein [Function unknown]
Probab=41.50 E-value=1.1e+02 Score=30.63 Aligned_cols=63 Identities=19% Similarity=0.101 Sum_probs=39.3
Q ss_pred HHHHhhccc-CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 008601 455 TVITGLFGI-NVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQEL 521 (560)
Q Consensus 455 TfIaGiyGM-NF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~~~~~~~~~~~~ 521 (560)
++..|+||- |+--.|-++ +.++.+++++++++.+ +++.+++..+-++..=+..|-+-.|+|+=
T Consensus 24 ~~~~~i~~~ln~~f~P~i~--~~~p~lvilV~avi~g--l~~~i~~~~liD~ekm~~~qk~m~efq~e 87 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLS--PLPPHLVILVAAVITG--LYITILQKLLIDQEKMKELQKMMKEFQKE 87 (201)
T ss_pred HHHHHHHHHHHHHHhhhcc--ccccHHHHHHHHHHHH--HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 666777765 777789887 5666666655554433 34566676666665555555555555443
No 62
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=41.28 E-value=31 Score=41.34 Aligned_cols=17 Identities=18% Similarity=-0.173 Sum_probs=10.5
Q ss_pred HHhhccCCcchhHHHHH
Q 008601 498 LYLGLKKPITEEQVEVR 514 (560)
Q Consensus 498 ~y~~~k~~~~~~~~~~~ 514 (560)
+.+..-+|+|..++..|
T Consensus 51 ~~lrrfr~Pt~~ea~~R 67 (820)
T PF13779_consen 51 RGLRRFRWPTRAEALRR 67 (820)
T ss_pred HHHhhCCCCCHHHHHHH
Confidence 33434488888887643
No 63
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=41.20 E-value=17 Score=30.87 Aligned_cols=26 Identities=19% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC
Q 008601 441 THNLAVFGGCGVVLTVITGLFGINVD 466 (560)
Q Consensus 441 MK~LTVvSaIFLPLTfIaGiyGMNF~ 466 (560)
.-.+++++++|++..-++++||+.+.
T Consensus 11 ~fw~ali~al~l~~q~v~~~fG~~~~ 36 (78)
T TIGR01598 11 ATLIALLGALFLAIQSILDNFGVLWL 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 34688999999999999999999765
No 64
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=40.86 E-value=2.2e+02 Score=27.33 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=12.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 008601 475 PYAFGLFTAILFFIGVVLIAVGLL 498 (560)
Q Consensus 475 pyGy~i~l~imvlia~vl~~~~l~ 498 (560)
|.+-+++++++++.+++++.+.+.
T Consensus 94 P~aT~lf~~~clv~avvly~vP~r 117 (156)
T PF08372_consen 94 PRATALFVVFCLVAAVVLYFVPFR 117 (156)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhHH
Confidence 555555555555555555544443
No 65
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=40.12 E-value=4.6e+02 Score=28.21 Aligned_cols=10 Identities=10% Similarity=-0.167 Sum_probs=4.9
Q ss_pred HHHHHHHHhC
Q 008601 289 TEVQELLFVG 298 (560)
Q Consensus 289 ~ev~e~l~~g 298 (560)
.++.+.+...
T Consensus 23 ~~a~~~L~~~ 32 (399)
T TIGR02120 23 RAARLQLRER 32 (399)
T ss_pred HHHHHHHHHC
Confidence 4455555443
No 66
>PRK03001 M48 family peptidase; Provisional
Probab=39.20 E-value=1.3e+02 Score=31.14 Aligned_cols=30 Identities=7% Similarity=-0.034 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHhhccCCcchhH
Q 008601 481 FTAILFFIGVVLIAVG---LLYLGLKKPITEEQ 510 (560)
Q Consensus 481 ~l~imvlia~vl~~~~---l~y~~~k~~~~~~~ 510 (560)
++++.+++.+++++++ +..+..++++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 65 (283)
T PRK03001 33 ALLFALGMNFFSYWFSDKMVLKMYNAQEVDENT 65 (283)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHcCCEECCccc
Confidence 3333344444444433 55555567777654
No 67
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.81 E-value=2.2e+02 Score=25.26 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 327 KTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELY 385 (560)
Q Consensus 327 e~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~ 385 (560)
+..+.+++.+|.++-+-|+..|.+ .+.-+|..++.++-.+...+.+.......|+
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~----~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVH----DLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344889999999999888765532 2334666666666666666655555444444
No 68
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=38.59 E-value=1.8e+02 Score=24.60 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=8.8
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 008601 518 LQELVKKFQHEAETHAQV 535 (560)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~ 535 (560)
|+++...=++-+|.=+.+
T Consensus 44 L~~L~~~a~rm~eRI~tL 61 (75)
T TIGR02976 44 LQELYAKADRLEERIDTL 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555544444333
No 69
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=38.40 E-value=84 Score=30.50 Aligned_cols=7 Identities=43% Similarity=0.881 Sum_probs=5.4
Q ss_pred CCCCCCC
Q 008601 466 DGIPGAD 472 (560)
Q Consensus 466 ~~MPel~ 472 (560)
.|||.++
T Consensus 20 ~gmp~ld 26 (181)
T PRK13454 20 PGMPQLD 26 (181)
T ss_pred CCCCCCc
Confidence 4689888
No 70
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=38.21 E-value=7.8e+02 Score=29.57 Aligned_cols=31 Identities=23% Similarity=0.146 Sum_probs=13.7
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 008601 468 IPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL 500 (560)
Q Consensus 468 MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~ 500 (560)
.|..+ .|+++-.++..++.+++++++.+.++
T Consensus 403 ~~~~~--~y~~yR~~~~lil~~~llLIv~~~~l 433 (806)
T PF05478_consen 403 EDEYE--KYDSYRWIVGLILCCVLLLIVLCLLL 433 (806)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 66654444443333333333333333
No 71
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=37.51 E-value=53 Score=40.13 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCCC
Q 008601 444 LAVFGGCGVVLTVITGLFGINVD 466 (560)
Q Consensus 444 LTVvSaIFLPLTfIaGiyGMNF~ 466 (560)
||.+ ++|+|+.|+.|+-|--|.
T Consensus 440 lTti-~vF~Pl~f~~G~~g~~~~ 461 (1021)
T PF00873_consen 440 LTTI-AVFLPLLFMPGIAGQFFR 461 (1021)
T ss_dssp HHHH-HHTCGGGGSBHHHHHHHH
T ss_pred HHHH-HHhhhhhhcCCchHHHHH
Confidence 4433 479999999999999886
No 72
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=37.21 E-value=2.1e+02 Score=26.72 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHhhccCC
Q 008601 440 VTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAI--LFFIGVVLIAVGLLYLGLKKP 505 (560)
Q Consensus 440 vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~i--mvlia~vl~~~~l~y~~~k~~ 505 (560)
.|-.-++++++|+..=++-=.+|=+.+ .++.+..++-|+.+++. .+.+.++.+++-.+|.++++.
T Consensus 37 ~Ml~a~~ls~lFlv~Yl~~~~~~g~~~-f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~~ 103 (133)
T PF04238_consen 37 LMLTAFVLSALFLVSYLYYHFLGGSTP-FGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRGR 103 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455666777777766554333333333 56655345545545443 333334455555666677763
No 73
>KOG2447 consensus Oligosaccharyltransferase, delta subunit (ribophorin II) [Posttranslational modification, protein turnover, chaperones]
Probab=36.59 E-value=69 Score=33.45 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhc---ccCCCCCCCCC
Q 008601 448 GGCGVVLTVITGLF---GINVDGIPGAD 472 (560)
Q Consensus 448 SaIFLPLTfIaGiy---GMNF~~MPel~ 472 (560)
..|+.|+-.+-++| |.||.++|-..
T Consensus 205 ~iiv~pll~Llv~W~klg~Nv~n~pss~ 232 (287)
T KOG2447|consen 205 GIIVSPLLGLLVLWLKLGANVSNFPSSP 232 (287)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCC
Confidence 34677777777776 68999999765
No 74
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=36.37 E-value=2.6e+02 Score=24.19 Aligned_cols=7 Identities=29% Similarity=0.686 Sum_probs=3.1
Q ss_pred HHhhccc
Q 008601 457 ITGLFGI 463 (560)
Q Consensus 457 IaGiyGM 463 (560)
++++.+.
T Consensus 38 l~~~~~~ 44 (112)
T PF14015_consen 38 LASLSGL 44 (112)
T ss_pred HHHHhhc
Confidence 3444444
No 75
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=36.20 E-value=1.8e+02 Score=31.61 Aligned_cols=54 Identities=19% Similarity=0.060 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---cccCCCCCCCCCCCCchHHHHH-H-HHHHHHHHHHHHHHHHh
Q 008601 440 VTHNLAVFGGCGVVLTVITGL---FGINVDGIPGADNTPYAFGLFT-A-ILFFIGVVLIAVGLLYL 500 (560)
Q Consensus 440 vMK~LTVvSaIFLPLTfIaGi---yGMNF~~MPel~~~pyGy~i~l-~-imvlia~vl~~~~l~y~ 500 (560)
+.-.++++++...-..++.|+ .|||=. .|||+|+.. . ..+.++++.+.++.+..
T Consensus 21 ~~~~l~~~g~~~~~~~~~~Glg~vtg~~~~-------~~WGl~I~~y~~~~vglaag~~~is~~~~ 79 (394)
T PRK10881 21 ILGPLIVICMLLIVKRFVFGLGSVSNLNGG-------YPWGIWIAFDVLIGTGFACGGWALAWLVY 79 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhcCCCCC-------CCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556665667777775 677753 799999885 3 33456666666665543
No 76
>PRK10633 hypothetical protein; Provisional
Probab=35.71 E-value=2.8e+02 Score=23.74 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcch
Q 008601 446 VFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITE 508 (560)
Q Consensus 446 VvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~ 508 (560)
.++.+.+..-.++++.+=|-.+ .-+-|--|++.|++.-++.+++.++.+.++.+-=|+.+
T Consensus 17 ~L~l~y~~~W~~~aY~~~~~~~---i~GlP~WF~~sCi~~p~lfi~l~~~~Vk~vFkDi~Ld~ 76 (80)
T PRK10633 17 GLTLLYLAAWLVAAYLPGNAPG---FTGLPHWFEMACLLLPLLFILLCWLMVKFIFRDIPLED 76 (80)
T ss_pred HHHHHHHHHHHHHHhccCCCCc---ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3444455555566654334332 22245566666666555555555555544443334443
No 77
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.83 E-value=30 Score=39.40 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=57.0
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC---CCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008601 434 QDRSLRVT-----HNLAVFGGCGVVLTVITGLFGINVDGIPGADN---TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 505 (560)
Q Consensus 434 n~r~N~vM-----K~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~---~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~ 505 (560)
+.|+-++| |..++.|+++.|=...+-+|=|||= +-+.+. -|+|-+++++.+=+..-+.+.+.--|+|+|++
T Consensus 383 s~rlyk~~~g~~wk~~~~lta~l~PGivf~~~f~lN~~-lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~ 461 (628)
T KOG1278|consen 383 SARLYKTFKGREWKRNAILTAFLFPGIVFAIFFVLNFF-LWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKP 461 (628)
T ss_pred hhhhHhhhcCCcchhhHHhhhhhcchHHHHHHHHHHHH-hhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCC
Confidence 44554444 5789999999999999999999995 333331 37777777766644445566666689999998
Q ss_pred cchhHHHHHH
Q 008601 506 ITEEQVEVRK 515 (560)
Q Consensus 506 ~~~~~~~~~~ 515 (560)
.-|.-|..-|
T Consensus 462 ~~e~PvrTNq 471 (628)
T KOG1278|consen 462 AIEHPVRTNQ 471 (628)
T ss_pred CCCCCcccCC
Confidence 8766555433
No 78
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.75 E-value=5.5e+02 Score=29.15 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=14.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 008601 315 CRLSRWDDRLFRKTIFGAADEIE 337 (560)
Q Consensus 315 d~lid~~~~~~le~ie~~ldeLE 337 (560)
+..++.+.. .++.|.+++.+|.
T Consensus 347 ~q~~~~~r~-ri~~i~e~v~eLq 368 (508)
T KOG3091|consen 347 DQEVKQHRI-RINAIGERVTELQ 368 (508)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHH
Confidence 344555555 6777887777775
No 79
>COG4327 Predicted membrane protein [Function unknown]
Probab=33.59 E-value=58 Score=28.66 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=19.8
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCchHHHHHH
Q 008601 452 VVLTVITGLFGINVDGIPGADNTPYAFGLFTA 483 (560)
Q Consensus 452 LPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~ 483 (560)
...||++-+|---+..|-... ||.|||+.-=
T Consensus 29 flVSfvvi~fa~alst~rifg-~pf~ywma~Q 59 (101)
T COG4327 29 FLVSFVVILFARALSTMRIFG-WPFGYWMAQQ 59 (101)
T ss_pred HHHHHHHHHHHHhhcccEEec-cchhhhhhcC
Confidence 345555555655555566667 8999986543
No 80
>PF13223 DUF4031: Protein of unknown function (DUF4031)
Probab=33.52 E-value=55 Score=28.23 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=28.7
Q ss_pred CCCCeEEEEecCCCHHHHHHHHhhcCCCHHHHHH
Q 008601 178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLA 211 (560)
Q Consensus 178 ~~~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~ed 211 (560)
|.++..|+|+.+.+.+|+..++...|+++...+.
T Consensus 9 p~~g~~w~HL~aDt~~ELHafA~riGv~rr~fq~ 42 (83)
T PF13223_consen 9 PWHGRLWSHLVADTLDELHAFAARIGVPRRWFQR 42 (83)
T ss_pred cccCcEeeeeccCCHHHHHHHHHHcCCCHHHHcC
Confidence 4566789999999999999999999999865544
No 81
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=32.92 E-value=41 Score=29.75 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhccCCcc
Q 008601 486 FFIGVVLIAVGLLYLGLKKPIT 507 (560)
Q Consensus 486 vlia~vl~~~~l~y~~~k~~~~ 507 (560)
+++.+..+.+.++|||.|.++|
T Consensus 14 llligftivvl~vyfgrk~yls 35 (126)
T PF13120_consen 14 LLLIGFTIVVLLVYFGRKFYLS 35 (126)
T ss_pred HHHHHHHHHhhhheecceeeee
Confidence 3344446677889999997665
No 82
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=31.96 E-value=2.2e+02 Score=23.34 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008601 441 THNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK 503 (560)
Q Consensus 441 MK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k 503 (560)
||++-++..+++..++-.|+|-|-=+ .+-+ .+-.++...=+.+.+++.++++-..|.|..
T Consensus 1 ~Ki~iv~lll~ii~sL~saL~~l~kd--~~~~-~rm~~~L~~RV~lS~~l~~lil~~~~~G~i 60 (63)
T PF11137_consen 1 MKILIVLLLLAIIASLFSALFFLVKD--KGSS-KRMVKALGRRVGLSALLFLLILIALYTGWI 60 (63)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhC--CCCC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 67888899999999999999999544 2223 455555444343333333333344455554
No 83
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.63 E-value=1.8e+02 Score=29.28 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 406 EMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGC 450 (560)
Q Consensus 406 rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaI 450 (560)
.+.+++.-+++|-..+++ .|+.+|.-|..|+++|.+
T Consensus 152 sI~~e~~YLr~REeemr~---------~nesTNsrv~~fSi~Sl~ 187 (210)
T KOG1691|consen 152 SIHEEMYYLREREEEMRN---------TNESTNSRVAWFSILSLV 187 (210)
T ss_pred HHHHHHHHHHHHHHHHHh---------hhhhhhhHHHHHHHHHHH
Confidence 334444444554444443 267888888888877643
No 84
>PRK10692 hypothetical protein; Provisional
Probab=31.36 E-value=76 Score=27.62 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=18.8
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008601 466 DGIPGADNTPYAFGLFTAILFFIGVVLIAVG 496 (560)
Q Consensus 466 ~~MPel~~~pyGy~i~l~imvlia~vl~~~~ 496 (560)
..+|++. .|--+.-..++.+++++++|++|
T Consensus 31 ~~i~~L~-Lp~~~~~gal~~IFiGAllWL~G 60 (92)
T PRK10692 31 NQLPQLN-LPQFFAHGALLSIFVGALLWLAG 60 (92)
T ss_pred HhcccCC-chHHHHhhHHHHHHHHHHHHHhc
Confidence 4688888 77655545555566666555555
No 85
>PRK00523 hypothetical protein; Provisional
Probab=31.32 E-value=1.2e+02 Score=25.50 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=7.2
Q ss_pred hccCCcchhHHH
Q 008601 501 GLKKPITEEQVE 512 (560)
Q Consensus 501 ~~k~~~~~~~~~ 512 (560)
....|++|+.+.
T Consensus 35 ~~NPpine~mir 46 (72)
T PRK00523 35 RENPPITENMIR 46 (72)
T ss_pred HHCcCCCHHHHH
Confidence 445666777654
No 86
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=31.13 E-value=2.5e+02 Score=23.73 Aligned_cols=55 Identities=29% Similarity=0.299 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccC---CcchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008601 477 AFGLFTAILFFIGVVLIAVGLLYLGLKK---PITEEQVEVRKLELQELVKKFQHEAETHAQV 535 (560)
Q Consensus 477 Gy~i~l~imvlia~vl~~~~l~y~~~k~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (560)
.|.++.++.+++.++.+|+.+-|..+++ -+|+++ ...|+++...=++-++.=..+
T Consensus 4 ~fl~~plivf~ifVap~WL~lHY~sk~~~~~gLs~~d----~~~L~~L~~~a~rm~eRI~tL 61 (75)
T PF06667_consen 4 EFLFVPLIVFMIFVAPIWLILHYRSKWKSSQGLSEED----EQRLQELYEQAERMEERIETL 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555666666664432 245444 233466665555555444444
No 87
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.64 E-value=6.4e+02 Score=26.75 Aligned_cols=20 Identities=5% Similarity=-0.066 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008601 434 QDRSLRVTHNLAVFGGCGVV 453 (560)
Q Consensus 434 n~r~N~vMK~LTVvSaIFLP 453 (560)
.++-++-.|.+.++..|.+.
T Consensus 263 ~qkkaRK~k~i~ii~~iii~ 282 (297)
T KOG0810|consen 263 YQKKARKWKIIIIIILIIII 282 (297)
T ss_pred HHHHhhhceeeeehHHHHHH
Confidence 34455544444444443333
No 88
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.57 E-value=1.2e+02 Score=30.28 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=29.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hccCCcchhH
Q 008601 468 IPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL-GLKKPITEEQ 510 (560)
Q Consensus 468 MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~-~~k~~~~~~~ 510 (560)
+++.. -+-||-+++++|+++.+.++.++..+. .+.+.+|-+.
T Consensus 6 ~r~~r-~qRG~~LivvL~~LvvltLl~l~~~r~~llqeRiSaN~ 48 (196)
T COG4726 6 IRGSR-RQRGFALIVVLMVLVVLTLLGLAAARSVLLQERISANE 48 (196)
T ss_pred CCCcc-ccCceEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55666 678998888888887777777766655 5555555543
No 89
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=30.47 E-value=59 Score=29.74 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 008601 443 NLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGV 490 (560)
Q Consensus 443 ~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~ 490 (560)
+..++|.++.-.|+|.|++ |...| .+ --+=|++++++++.++.
T Consensus 33 iiG~vT~l~VLvtii~afv---f~~~~-p~-p~~iffavcI~l~~~s~ 75 (118)
T PF10856_consen 33 IIGAVTSLFVLVTIISAFV---FPQDP-PK-PLHIFFAVCILLICISA 75 (118)
T ss_pred ehHHHHHHHHHHHHhheEE---ecCCC-CC-ceEEehHHHHHHHHHHH
Confidence 4566677777778888875 54333 12 12234444444444433
No 90
>COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]
Probab=30.07 E-value=1.6e+02 Score=29.66 Aligned_cols=60 Identities=25% Similarity=0.077 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhc-ccCCCCCCCCCCCCchHHHHHHHH--HHHHHHHHHHHHHHhhccCCcchh
Q 008601 449 GCGVVLTVITGLF-GINVDGIPGADNTPYAFGLFTAIL--FFIGVVLIAVGLLYLGLKKPITEE 509 (560)
Q Consensus 449 aIFLPLTfIaGiy-GMNF~~MPel~~~pyGy~i~l~im--vlia~vl~~~~l~y~~~k~~~~~~ 509 (560)
.+.+|++++||+= +++.. .|.++.++-|+..+-.+= +.+.++.++++=+++.++-+++++
T Consensus 148 ~~LlpLlvlTGLam~~p~~-~p~l~~~~Ggrq~ar~vHFa~m~~~v~FiivHl~l~~~~~p~~~ 210 (221)
T COG4117 148 YGLLPLLVLTGLAMLKPQQ-LPWLDELPGGRQTARWVHFALMLIVVGFIIVHLLLCLLAGPTEL 210 (221)
T ss_pred HHHHHHHHHHHHHHccccc-cchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHh
Confidence 4568999999972 55655 776665676665544331 222233455566777777775543
No 91
>PRK01844 hypothetical protein; Provisional
Probab=29.74 E-value=1.3e+02 Score=25.23 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=7.4
Q ss_pred hccCCcchhHHH
Q 008601 501 GLKKPITEEQVE 512 (560)
Q Consensus 501 ~~k~~~~~~~~~ 512 (560)
+...|++|+.+.
T Consensus 34 k~NPpine~mir 45 (72)
T PRK01844 34 QKNPPINEQMLK 45 (72)
T ss_pred HHCCCCCHHHHH
Confidence 444567877654
No 92
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=29.21 E-value=1.5e+02 Score=27.44 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCC
Q 008601 447 FGGCGVVLTVITGLFGINVDGIPG 470 (560)
Q Consensus 447 vSaIFLPLTfIaGiyGMNF~~MPe 470 (560)
+++...-+.++||++=+...++|.
T Consensus 51 ~~~~~~~~~~vtG~~l~~~~g~~~ 74 (150)
T PF10027_consen 51 FTAPGGILLPVTGLWLAWLLGWPL 74 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 444445556677877777665554
No 93
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=29.18 E-value=1.4e+02 Score=32.79 Aligned_cols=63 Identities=24% Similarity=0.408 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----hcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH---HHHhhccCCcc
Q 008601 436 RSLRVTHNLAVFGGCGVVLTVITG-----LFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVG---LLYLGLKKPIT 507 (560)
Q Consensus 436 r~N~vMK~LTVvSaIFLPLTfIaG-----iyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~---l~y~~~k~~~~ 507 (560)
+.-+..+.||+.+-|+.-.+-.+. +||+ + .||..+-...++..++++++++| +.|+.++.-..
T Consensus 232 ~~Rr~~H~l~~yGFil~f~aT~va~~yh~~~~~--------~-aPyp~~s~~klLg~vGgi~LliG~~gl~~~~~R~d~~ 302 (389)
T PRK15033 232 LARRRFHHLTFYGFMLCFAATVVATLYHYVLGW--------H-APYPFFSLPVLLGTLGGIGLLIGPAGLLWLNLRRHPL 302 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------C-CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344567778888876665555444 5666 3 46655545555555555555554 46666665433
No 94
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=28.64 E-value=1.7e+02 Score=25.95 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=15.1
Q ss_pred HHHHHhhccc-CCCCCC--CCCCCCchHHHHHHHH
Q 008601 454 LTVITGLFGI-NVDGIP--GADNTPYAFGLFTAIL 485 (560)
Q Consensus 454 LTfIaGiyGM-NF~~MP--el~~~pyGy~i~l~im 485 (560)
+.+|--+|-| |.+..+ .+- |.|-++..++++
T Consensus 33 illLllifav~Nt~~V~~~~lf-g~~~~PLilvil 66 (98)
T COG5416 33 ILLLLLIFAVINTDSVEFNYLF-GQWELPLILVIL 66 (98)
T ss_pred HHHHHHHHHHhccCceEEEeec-chhhhhHHHHHH
Confidence 3334444444 887443 333 445555555544
No 95
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=28.60 E-value=1.7e+02 Score=30.87 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 008601 437 SLRVTHNLAVFGGCGVVLTVITGLF 461 (560)
Q Consensus 437 ~N~vMK~LTVvSaIFLPLTfIaGiy 461 (560)
...=++.++.++++++.+.++.|+|
T Consensus 227 s~~Plr~~~~~g~~~~~~~~~~~~~ 251 (325)
T PRK10714 227 TTTPLRLLSLLGSIIAIGGFSLAVL 251 (325)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777665
No 96
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=28.51 E-value=3e+02 Score=24.76 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHH
Q 008601 446 VFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFF 487 (560)
Q Consensus 446 VvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvl 487 (560)
+.+.+++-+.....+++.+++..+...-.|-.|+.++++..+
T Consensus 5 i~~~~~~~~~~~~~~~a~~~~~~~~~~~gp~~fP~~l~~~l~ 46 (141)
T PF07331_consen 5 IIGLVFLAFGAVFLYQAFQIPSFPSGSPGPGFFPRLLGILLL 46 (141)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCCCChHHHHHHHHHHH
Confidence 456666667777777776665333322135556655554433
No 97
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=28.27 E-value=4.7e+02 Score=23.93 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008601 325 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHL 388 (560)
Q Consensus 325 ~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~l 388 (560)
.++.+...+++++.++-..-......||. -...+..++..+-.++-.+......+.+|...+
T Consensus 34 ~l~kL~~~i~eld~~i~~~v~~~~~~LL~--q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 34 PLKKLNFDIQELDKRIRSQVTSNHEDLLS--QASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777666533211111222 123455566655566666666666666665433
No 98
>PRK11380 hypothetical protein; Provisional
Probab=27.95 E-value=2.3e+02 Score=30.66 Aligned_cols=80 Identities=20% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHH----HHHHHHh--hccCCcchhHHHHHHHH
Q 008601 444 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLI----AVGLLYL--GLKKPITEEQVEVRKLE 517 (560)
Q Consensus 444 LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~----~~~l~y~--~~k~~~~~~~~~~~~~~ 517 (560)
||++-+|..++..|+|.+=-.-+++|... ....+.+++++|.+|....+ +=-+.|. +...|+|+||-++=.+.
T Consensus 46 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~~~~~~~~~~~eq~~yy~~~~~~~LteEq~r~L~L~ 124 (353)
T PRK11380 46 LTCVVAVMFVFAAITSNGLNERGYLLLIT-AGCSFLYLLIMLGLIVRAGFKKAKKEQLRYYQAKGIEPLSEEKRQALQLI 124 (353)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHH-HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCCCCCCHHHHHHHHHh
Q ss_pred HHHHHHHhHH
Q 008601 518 LQELVKKFQH 527 (560)
Q Consensus 518 ~~~~~~~~~~ 527 (560)
- |..||+
T Consensus 125 a---Vya~~~ 131 (353)
T PRK11380 125 A---VYRFYH 131 (353)
T ss_pred h---HHHHHh
No 99
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.70 E-value=1.1e+02 Score=26.10 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 008601 438 LRVTHNLAVFGGCGVVLTVITGLFGINVD 466 (560)
Q Consensus 438 N~vMK~LTVvSaIFLPLTfIaGiyGMNF~ 466 (560)
..-.-.+++++++++|.--+.|+||....
T Consensus 9 kN~~~w~ali~~i~l~vq~~~~~fg~~~~ 37 (84)
T PF04531_consen 9 KNKAFWVALISAILLLVQQVGGLFGWGAD 37 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33345678999999999999999988553
No 100
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=27.56 E-value=1.1e+02 Score=29.90 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchhH
Q 008601 485 LFFIGVVLIAVGLLYLGLKKPITEEQ 510 (560)
Q Consensus 485 mvlia~vl~~~~l~y~~~k~~~~~~~ 510 (560)
+++.++++++++++|++.-.|.++..
T Consensus 39 ll~~~g~vL~l~i~Y~~iWqPl~~~~ 64 (178)
T PRK09731 39 MLLAAVVFLFSVGYYVLIWQPLSERI 64 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45556667778899999999997743
No 101
>KOG4615 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.44 E-value=1.8e+02 Score=25.42 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 008601 420 TIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGV 490 (560)
Q Consensus 420 ~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~ 490 (560)
.+|+.|...++ +..+-.+.--+|.--..+..+|||. ||..-.+.+ ..||-.+..-+.+++++
T Consensus 21 slqeiyrgkla---sselftilggftssllflfsltfig-----nfqessgik-sgwgavilaeiialiaa 82 (122)
T KOG4615|consen 21 SLQEIYRGKLA---SSELFTILGGFTSSLLFLFSLTFIG-----NFQESSGIK-SGWGAVILAEIIALIAA 82 (122)
T ss_pred hHHHHHhccch---hhHHHHHHhhhHHHHHHHHHHHhhc-----ccccccCcc-cchhHHHHHHHHHHHhc
Confidence 45666666653 2222222222222222333455553 888777888 78887665555555544
No 102
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=27.38 E-value=1.1e+02 Score=26.58 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=18.8
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008601 466 DGIPGADNTPYAFGLFTAILFFIGVVLIAVG 496 (560)
Q Consensus 466 ~~MPel~~~pyGy~i~l~imvlia~vl~~~~ 496 (560)
..+|.++ .|--+.-..++.++++++++++|
T Consensus 31 ~~~~~L~-Lp~~~~~gal~~IFiGAllWL~G 60 (89)
T PF10762_consen 31 SQIPQLG-LPQFLAHGALFSIFIGALLWLVG 60 (89)
T ss_pred HhcccCC-CcHHHHhhHHHHHHHHHHHHHhc
Confidence 4688888 77655444555566666555555
No 103
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=27.18 E-value=3.8e+02 Score=22.79 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=15.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 008601 474 TPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPIT 507 (560)
Q Consensus 474 ~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~ 507 (560)
.|--|++.|++..++.+++.++.+.++-+-=|+.
T Consensus 42 lPlWF~~SCi~~~il~~~l~~~~vk~~Fkd~~Ld 75 (80)
T PF06196_consen 42 LPLWFFYSCIGGPILFIILVWLMVKFFFKDIPLD 75 (80)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3444555555444444444444444444333333
No 104
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.18 E-value=43 Score=30.65 Aligned_cols=6 Identities=0% Similarity=0.047 Sum_probs=2.2
Q ss_pred chHHHH
Q 008601 476 YAFGLF 481 (560)
Q Consensus 476 yGy~i~ 481 (560)
|.+|++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 333333
No 105
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=26.82 E-value=9.3e+02 Score=26.93 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008601 426 QSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVG 496 (560)
Q Consensus 426 ~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~ 496 (560)
-+.+-.+++.+.+-..|..-+++.++..+.-+.|++||... ..+.+ .+|.||++-++..+.........
T Consensus 333 Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~-~~g~~-~~~~f~~~a~~~G~~~G~~qs~s 401 (477)
T PF11700_consen 333 GALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS-FFGLK-SPWEFWVLAVLIGLFMGGIQSAS 401 (477)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc-ccCcc-cHHHHHHHHHHHHHHhhhHHHHH
Confidence 33333456777776555666777777778888999999776 55777 79998876655444333333333
No 106
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=26.67 E-value=2.4e+02 Score=27.46 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=32.5
Q ss_pred cccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 008601 461 FGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL 500 (560)
Q Consensus 461 yGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~ 500 (560)
|=||+.|-|-.. ||--.++..=++++.++....+|++++
T Consensus 79 yP~~iGGKP~~S-~Pafipi~FEltVL~aa~~~~~g~l~~ 117 (173)
T PF11821_consen 79 YPLNIGGKPLFS-WPAFIPITFELTVLFAALGTVLGMLIL 117 (173)
T ss_pred cceecCCCCCCC-CcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998 887777776678888888888888876
No 107
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=26.62 E-value=4.2e+02 Score=26.16 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHH
Q 008601 444 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRK 515 (560)
Q Consensus 444 LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~~~~~~ 515 (560)
+-..-.+..++.+++|+.|.... + ...++.++..+++..+....--|+--|-..-.++.+.+|
T Consensus 7 ~G~~DGlv~~~~lv~G~a~a~~~--------~-~~vl~~gla~~iAga~SMa~G~yls~~se~~~~~~e~~r 69 (213)
T PF01988_consen 7 FGANDGLVTTFGLVAGVAGAGVS--------S-SVVLLAGLAGLIAGAISMAVGEYLSVKSERDLYEAERER 69 (213)
T ss_pred hhccchHHHHHHHHHHHHHcccC--------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 33444677889999999999873 1 334445555555555544455566555444334444433
No 108
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=26.33 E-value=2.2e+02 Score=28.87 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcccCCCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008601 451 GVVLTVITGLFGINVDGIPGADN-TPYAFGLFTAILFFIGVVLIAVGLLYLGL 502 (560)
Q Consensus 451 FLPLTfIaGiyGMNF~~MPel~~-~pyGy~i~l~imvlia~vl~~~~l~y~~~ 502 (560)
|+=+++++++.+-=++.+|.+.+ .+.|.+++. +++.+++.++.+++.|+.-
T Consensus 195 f~G~~~~~~~l~~l~~~~P~lg~l~~~~~~~~~-~~~s~~lsl~~Ia~aW~~y 246 (248)
T PF07787_consen 195 FIGFFLLFSPLYTLVDWIPLLGNLVGFGLFLVA-FIISFSLSLLTIALAWLFY 246 (248)
T ss_pred HHHHHHHHHHHHHHHhhhceeechhhhHHHHHH-HHHHHHHHHHHHHHhheee
Confidence 33355555555544456787761 233444333 3344455566677777654
No 109
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.09 E-value=97 Score=33.28 Aligned_cols=77 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc-----------CCcchhH
Q 008601 442 HNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK-----------KPITEEQ 510 (560)
Q Consensus 442 K~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k-----------~~~~~~~ 510 (560)
..|--+.++++|+.+ ...+-..+ |.||||+|.++..+ .+.+.+|.+=--+| |-++|++
T Consensus 16 ~y~~p~~~~llp~~~--------~pfls~~q-k~y~~f~f~~iss~--gwff~i~~re~qlk~aa~~llq~kirk~~e~~ 84 (401)
T PF06785_consen 16 NYFFPVAAFLLPLVC--------YPFLSDSQ-KNYGYFVFSIISSL--GWFFAIGRREKQLKTAAGQLLQTKIRKITEKD 84 (401)
T ss_pred hhhhhHHHHHHHHhH--------hhhcCHHH-HhcceeehHHHHHh--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 008601 511 VEVRKLELQELVKKFQHEAET 531 (560)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~ 531 (560)
--.||+ .+.+..-|.+.+.
T Consensus 85 eglr~i--~es~~e~q~e~~q 103 (401)
T PF06785_consen 85 EGLRKI--RESVEERQQESEQ 103 (401)
T ss_pred HHHHHH--HHHHHHHHHHHHH
No 110
>PRK06041 flagellar assembly protein J; Reviewed
Probab=26.05 E-value=5.1e+02 Score=29.79 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=5.2
Q ss_pred HHHHhhccc
Q 008601 455 TVITGLFGI 463 (560)
Q Consensus 455 TfIaGiyGM 463 (560)
++..+++|.
T Consensus 208 ~v~~~l~g~ 216 (553)
T PRK06041 208 IISPILTGT 216 (553)
T ss_pred HHHHHHcCC
Confidence 445556666
No 111
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=26.00 E-value=83 Score=33.47 Aligned_cols=43 Identities=30% Similarity=0.509 Sum_probs=31.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccCCCCC
Q 008601 503 KKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPT 546 (560)
Q Consensus 503 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (560)
++-.+|+..+..+.+- +.-.-..+.||.|+|||+.+.+-+.|.
T Consensus 67 ~r~tdeekr~ler~~~-~i~~d~rraAE~HRqvR~yv~s~ikPG 109 (397)
T KOG2775|consen 67 DRTTDEEKRELERTES-DIYQDLRRAAEAHRQVRKYVQSIIKPG 109 (397)
T ss_pred cccchHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 5666777777776543 344556789999999999887666664
No 112
>PHA02844 putative transmembrane protein; Provisional
Probab=25.62 E-value=1.5e+02 Score=25.12 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=16.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008601 475 PYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 505 (560)
Q Consensus 475 pyGy~i~l~imvlia~vl~~~~l~y~~~k~~ 505 (560)
++++++++++ ++.+++++++.++|++.-++
T Consensus 45 ~~~~~~~ii~-i~~v~~~~~~~flYLK~~~r 74 (75)
T PHA02844 45 SSSTKIWILT-IIFVVFATFLTFLYLKAVPR 74 (75)
T ss_pred ChhHHHHHHH-HHHHHHHHHHHHHHHheecC
Confidence 4555544433 44455566667778776543
No 113
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=25.41 E-value=2.1e+02 Score=28.17 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 008601 443 NLAVFGGCGVVLTVI 457 (560)
Q Consensus 443 ~LTVvSaIFLPLTfI 457 (560)
+|++++++.+-.+++
T Consensus 27 vLgvVs~~iL~F~~~ 41 (183)
T PF12263_consen 27 VLGVVSAVILLFANL 41 (183)
T ss_pred HHHHHHHHHHHHHhh
Confidence 588888877766653
No 114
>PHA02650 hypothetical protein; Provisional
Probab=25.36 E-value=1.1e+02 Score=26.18 Aligned_cols=30 Identities=7% Similarity=0.028 Sum_probs=16.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008601 475 PYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 505 (560)
Q Consensus 475 pyGy~i~l~imvlia~vl~~~~l~y~~~k~~ 505 (560)
++++++++++ +++++++.++.++|++.-++
T Consensus 46 ~~~~~~~ii~-i~~v~i~~l~~flYLK~~~r 75 (81)
T PHA02650 46 WFNGQNFIFL-IFSLIIVALFSFFVFKGYTR 75 (81)
T ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 4444444443 44445556667778766543
No 115
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=25.25 E-value=2.5e+02 Score=26.91 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 008601 418 LFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVD 466 (560)
Q Consensus 418 l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~ 466 (560)
+..+.+.|....- ..+.+++.+.-+++|--|..+-++.|++=++-+
T Consensus 46 L~~li~Ly~~~ty---~k~~~k~l~kt~~iSF~~avLGiifgI~~qll~ 91 (161)
T PF13042_consen 46 LYILIDLYCKNTY---DKKFSKVLIKTNVISFNFAVLGIIFGIIHQLLG 91 (161)
T ss_pred HHHHHHHhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666655542 567778888889999999999999999988765
No 116
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=25.22 E-value=85 Score=29.77 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 008601 440 VTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL 500 (560)
Q Consensus 440 vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~ 500 (560)
..+.+.+.|+.|..+|+++=+++-- +.+=...+.+.|+++++..+.+++-|+
T Consensus 10 ~~~W~~~~ti~~~~lTilaFi~~WG---------~RFRLVGvT~F~~vLt~g~fal~~~~~ 61 (145)
T PF10726_consen 10 YTQWLGIATIALAVLTILAFIFKWG---------IRFRLVGVTSFMLVLTVGCFALSLSYF 61 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC---------ceEEEecHHHHHHHHHHHHHHheeccC
Confidence 3456777777888888877664321 233344567778888899999998887
No 117
>PHA02819 hypothetical protein; Provisional
Probab=24.67 E-value=1.6e+02 Score=24.66 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=15.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008601 474 TPYAFGLFTAILFFIGVVLIAVGLLYLGL 502 (560)
Q Consensus 474 ~pyGy~i~l~imvlia~vl~~~~l~y~~~ 502 (560)
.++++++++++ ++.++++.++.++|++.
T Consensus 42 ~~~~~~~~ii~-l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 42 KSFLRYYLIIG-LVTIVFVIIFIIFYLKV 69 (71)
T ss_pred CChhHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 35555554444 34444455666777764
No 118
>PRK10506 hypothetical protein; Provisional
Probab=24.63 E-value=1.2e+02 Score=28.85 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008601 477 AFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQV 535 (560)
Q Consensus 477 Gy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (560)
||-+ +=+|++++++.++.++....+..+.....++....+++.++..-|.+|-.+.+-
T Consensus 10 GFTL-iEllvvl~Ii~il~~~a~p~~~~~~~~~~~~~~~~~l~~~l~~ar~~A~~~~~~ 67 (162)
T PRK10506 10 GYTL-IELLVVMTIVSILSAWGLYGWQRWQQRQRLWQTAQQLLDFLLRLQEDANWHNRD 67 (162)
T ss_pred CeeH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5532 223444444455555555666677777777777777777777777777655543
No 119
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=24.49 E-value=25 Score=36.31 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCc---chhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008601 493 IAVGLLYLGLKKPI---TEEQVEVRKLELQELVKKFQHEAETHAQV 535 (560)
Q Consensus 493 ~~~~l~y~~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (560)
+++|++|+++|.+- +.|++++-+. ++=++|.|+.+..+++|
T Consensus 230 FvlG~l~WKkkq~~~~~~~eni~~~ee--dNEiSMLq~~~~e~~~v 273 (273)
T PF02404_consen 230 FVLGALYWKKKQRSLTQEVENIQINEE--DNEISMLQEKEREFQEV 273 (273)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHhhccccccccccccccch--hhHHHHHHhhhhhhhcC
Confidence 45577788777664 3455666644 55679999888777765
No 120
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=24.29 E-value=79 Score=30.26 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 008601 475 PYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI 506 (560)
Q Consensus 475 pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~ 506 (560)
.||-|++=++.+++++++++.+++-+..|+--
T Consensus 6 ~yglFlaK~vTvVvaI~~vv~~I~~~~~k~k~ 37 (155)
T PF08496_consen 6 EYGLFLAKIVTVVVAILAVVGLIVAAAQKKKK 37 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 57777766677777777776677776666653
No 121
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=24.09 E-value=3.1e+02 Score=25.35 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhccc-CCC-CCCCCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHhhccCCcchh
Q 008601 443 NLAVFGGCGVVLTVITGLFGI-NVD-GIPGADNTPY--AFGLFTAILFFIGVVLIAVGLLYLGLKKPITEE 509 (560)
Q Consensus 443 ~LTVvSaIFLPLTfIaGiyGM-NF~-~MPel~~~py--Gy~i~l~imvlia~vl~~~~l~y~~~k~~~~~~ 509 (560)
..+.++.+.++++++..+||+ .++ .-++-. ..| ||-..++++++.+++..++..+|+....|---+
T Consensus 29 ~~~~~~~~~~~~~~~~i~~~i~~~R~~~~~g~-isf~~a~~~g~~~~~ia~li~~v~~~i~~~~IdP~~~~ 98 (163)
T PF13858_consen 29 SNSWLGILSMVITIIFIYFAIRRYRKKYNGGF-ISFGQAFKVGFLISLIAGLISAVFQYIYFNYIDPDFFE 98 (163)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 455666677777777778888 454 444333 334 455555556666666666777777776665333
No 122
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=23.89 E-value=89 Score=30.88 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhccc--CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 008601 446 VFGGCGVVLTVITGLFGI--NVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI 506 (560)
Q Consensus 446 VvSaIFLPLTfIaGiyGM--NF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~ 506 (560)
-+.+.++.++=++|+||. =|.|-|.-- +.|.+++..++++ +++++|+..+++.+|.
T Consensus 14 eli~l~~l~NK~sG~YGlLAlfTG~~ls~-~Q~s~YlySi~~L----~~~~~~l~~Irk~~~~ 71 (189)
T PF08552_consen 14 ELILLFLLFNKVSGLYGLLALFTGHPLSF-LQLSMYLYSILAL----VLFAWGLPHIRKQSPL 71 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHH----HHHHHHhHHhccCCHH
Confidence 344566778888888888 456666665 6777665544333 3455676666644443
No 123
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=23.69 E-value=5.3e+02 Score=27.46 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008601 434 QDRSLRVTHNLAVFGGCGVVLTV 456 (560)
Q Consensus 434 n~r~N~vMK~LTVvSaIFLPLTf 456 (560)
.....-+--+|||++..+.|.|+
T Consensus 102 ~ss~g~vsGilsIlGLaLAPvT~ 124 (313)
T PF05461_consen 102 GSSTGAVSGILSILGLALAPVTA 124 (313)
T ss_pred hhhHHHHhhHHHHHhHHhccccc
Confidence 44455555567777777777764
No 124
>PHA03240 envelope glycoprotein M; Provisional
Probab=23.58 E-value=89 Score=31.59 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=11.3
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 008601 474 TPYAFGLFTAILFFIGVVLI 493 (560)
Q Consensus 474 ~pyGy~i~l~imvlia~vl~ 493 (560)
.++..|+++++.+++.++++
T Consensus 210 aaH~~WIiilIIiIiIIIL~ 229 (258)
T PHA03240 210 AAHIAWIFIAIIIIIVIILF 229 (258)
T ss_pred cchHhHHHHHHHHHHHHHHH
Confidence 56667766665554444433
No 125
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=23.54 E-value=28 Score=41.91 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHH
Q 008601 445 AVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILF 486 (560)
Q Consensus 445 TVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imv 486 (560)
++++++.+||+++.++-+||+-+++.--.+--|-.+.+++|+
T Consensus 361 Ali~~~~lPLS~li~f~~M~~~gi~~NlMSLGGlAIaiG~~V 402 (1027)
T COG3696 361 ALIVIISLPLSLLIAFIVMNFFGISANLMSLGGLAIAIGAMV 402 (1027)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhhcccchheeeeeee
No 126
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.93 E-value=4.2e+02 Score=22.52 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC---CcchhHHHHHHHHHHHHHHHhHHHHHHHH
Q 008601 478 FGLFTAILFFIGVVLIAVGLLYLGLKK---PITEEQVEVRKLELQELVKKFQHEAETHA 533 (560)
Q Consensus 478 y~i~l~imvlia~vl~~~~l~y~~~k~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (560)
|.++-++++++.++.+|+.+=|--+++ -+|+++- ..|+++..+=++-++.-.
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~sk~~~~~~Ls~~d~----~~L~~L~~~A~rm~~RI~ 59 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYRSKRQGSQGLSQEEQ----QRLAQLTEKAERMRERIQ 59 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhcccccCCCCCCHHHH----HHHHHHHHHHHHHHHHHH
Confidence 333333444444445555554543333 2565542 234555544444444333
No 127
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=22.90 E-value=5.9e+02 Score=23.30 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=7.9
Q ss_pred HHHHHhhcccCCC
Q 008601 454 LTVITGLFGINVD 466 (560)
Q Consensus 454 LTfIaGiyGMNF~ 466 (560)
..|+.+++++|+.
T Consensus 82 ~lf~~~~~~~~~~ 94 (130)
T PF11026_consen 82 LLFLSALLSIDLS 94 (130)
T ss_pred HHHHHHHHccchH
Confidence 4455667766654
No 128
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=22.42 E-value=2.2e+02 Score=26.16 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcc-CCcc---hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 008601 492 LIAVGLLYLGLK-KPIT---EEQVEVRKLELQELVKKFQHEAETHAQVRKNV 539 (560)
Q Consensus 492 l~~~~l~y~~~k-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (560)
+++..++|+.+. +|.. +++.+..+.-|+++-.+|..-+..-++|-+-|
T Consensus 53 ~~~Yi~l~~~lp~~P~~~~~~~~~~s~~~~l~~~~~~~~~~e~Rlr~mE~yV 104 (118)
T PRK10697 53 LVAYIILSFALDPMPDNMAFGEQQPSSSELLDEVDRELAAGEQRLREMERYV 104 (118)
T ss_pred HHHHHHHHHhccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555444 4432 34555677778999999999988888884433
No 129
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=22.36 E-value=4.5e+02 Score=26.77 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 008601 475 PYAFGLFTAILFFIGVVLIAVG 496 (560)
Q Consensus 475 pyGy~i~l~imvlia~vl~~~~ 496 (560)
.|-||+++++++.+.+.+++++
T Consensus 51 ~~~~~~i~gi~~g~l~am~vl~ 72 (224)
T PF13829_consen 51 SWWYWLIIGILLGLLAAMIVLS 72 (224)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888877777777666
No 130
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=22.34 E-value=3.8e+02 Score=25.61 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=4.7
Q ss_pred CCCCCCC
Q 008601 466 DGIPGAD 472 (560)
Q Consensus 466 ~~MPel~ 472 (560)
.|||-++
T Consensus 7 ~~~~~l~ 13 (173)
T PRK13460 7 KGLSLLD 13 (173)
T ss_pred CCCCccC
Confidence 4677776
No 131
>PF15212 SPATA19: Spermatogenesis-associated protein 19, mitochondrial
Probab=22.29 E-value=1e+02 Score=27.93 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=25.0
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhccCCCCCCCc
Q 008601 518 LQELVKKFQHEAETHAQVRKNVRNNLTPTAGD 549 (560)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (560)
+|+|.+| .++|+-+.+++..+.|-||+.|.
T Consensus 15 vqhwlkK--teEEASq~IKeKmS~n~~pthg~ 44 (130)
T PF15212_consen 15 VQHWLKK--TEEEASQGIKEKMSTNCPPTHGQ 44 (130)
T ss_pred HHHHHHH--hHhhhhHHHHHHhcCCCCCccCc
Confidence 4778876 56777888999999999999986
No 132
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.15 E-value=4.3e+02 Score=24.82 Aligned_cols=13 Identities=62% Similarity=0.764 Sum_probs=9.4
Q ss_pred HHHHHHhHHHHHH
Q 008601 519 QELVKKFQHEAET 531 (560)
Q Consensus 519 ~~~~~~~~~~~~~ 531 (560)
||+|+-|-+.||-
T Consensus 55 qel~~HFa~sAeL 67 (138)
T COG3105 55 QELVKHFARSAEL 67 (138)
T ss_pred HHHHHHHHHHHHH
Confidence 4678888777774
No 133
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=21.90 E-value=4e+02 Score=27.00 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=12.8
Q ss_pred HHHHHHHhHHHHHHHHHHhhh
Q 008601 518 LQELVKKFQHEAETHAQVRKN 538 (560)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~ 538 (560)
..+|+.- .-|+|+|+-.+..
T Consensus 173 ~kk~i~s-~DEgEk~i~y~~~ 192 (248)
T PF11368_consen 173 VKKWIES-CDEGEKQINYEAS 192 (248)
T ss_pred HHHHHHh-CCHHHHHHHHHHH
Confidence 3555664 4788888766553
No 134
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=21.72 E-value=4.5e+02 Score=30.17 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcc--cCC
Q 008601 392 VARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDR----SLRVTHNLAVFGGCGVVLTVITGLFG--INV 465 (560)
Q Consensus 392 ~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r----~N~vMK~LTVvSaIFLPLTfIaGiyG--MNF 465 (560)
.-++|+..+.-++..++.+.+.++..-.+|.+.+...++....-+ --+--|.--.+.+|+..+.||+-.|| ||+
T Consensus 299 KKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk~Rkvvaimv~maFi~f~~~~p~ni 378 (655)
T KOG4343|consen 299 KKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKKKRKVVAIMVVMAFIIFNYGSPMNI 378 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCcccccccchhhhhHHHHHHHHHHhccCcccc
Confidence 345667777777888888888887777777776666653110000 00001223456777788889999999 777
Q ss_pred CCCC
Q 008601 466 DGIP 469 (560)
Q Consensus 466 ~~MP 469 (560)
.+=+
T Consensus 379 ~nnl 382 (655)
T KOG4343|consen 379 LNNL 382 (655)
T ss_pred cCCc
Confidence 6533
No 135
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=21.55 E-value=75 Score=35.99 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 008601 441 THNLAVFGGCGVVLTVITGLFGINVDGIPGAD--NTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPIT 507 (560)
Q Consensus 441 MK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~--~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~~~ 507 (560)
-|..+++|+++.|..+++.++.||+-.+-.-. .-|.+-.++++++-++..+.+.+.--++|+|++..
T Consensus 329 W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~ 397 (521)
T PF02990_consen 329 WKKNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPI 397 (521)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCcccc
Confidence 34567889999999999999999985222111 02555555555554444555555556777766554
No 136
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=21.44 E-value=1e+03 Score=25.54 Aligned_cols=11 Identities=18% Similarity=0.063 Sum_probs=5.7
Q ss_pred HHHHHHHHhCC
Q 008601 289 TEVQELLFVGG 299 (560)
Q Consensus 289 ~ev~e~l~~g~ 299 (560)
+++.+.++..+
T Consensus 29 ~~a~~~L~~~g 39 (399)
T PRK10573 29 LLLYQALQQQG 39 (399)
T ss_pred HHHHHHHHHCC
Confidence 45555555443
No 137
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=21.32 E-value=54 Score=30.34 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 008601 438 LRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL 500 (560)
Q Consensus 438 N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~ 500 (560)
.+..+.|.+++.++.-+.++.++.||.-...-+.. +. .+++.+++++..++++.++
T Consensus 70 ~~a~r~l~i~s~il~~l~~~l~~~g~~~~~~~~~~--~~-----ag~l~~~agl~~l~~~~~y 125 (166)
T PF00822_consen 70 LQAARALMILSIILGFLGLILALFGLCCTKRGPRP--KV-----AGILFILAGLCLLIAVSWY 125 (166)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccccCCCC--Cc-----ceeeeHHHhhhhheeEEEE
Confidence 44566789999999999999999999664332222 11 3344444554555555444
No 138
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=21.24 E-value=2.2e+02 Score=32.27 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008601 437 SLRVTHNLAVFGGCGVVLTVITGLFGI 463 (560)
Q Consensus 437 ~N~vMK~LTVvSaIFLPLTfIaGiyGM 463 (560)
.-.+...++++-.|.+|||++.|++|.
T Consensus 366 f~t~~~l~~lw~~v~~PL~~lG~~~g~ 392 (521)
T PF02990_consen 366 FGTILFLIALWFFVSIPLTFLGGYFGF 392 (521)
T ss_pred hHHHHHHHHHHHHHhhhhhhcchhhhc
Confidence 445667788888899999999999994
No 139
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=20.89 E-value=2.8e+02 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 008601 444 LAVFGGCGVVLTVITGLFGINVDGIPGAD 472 (560)
Q Consensus 444 LTVvSaIFLPLTfIaGiyGMNF~~MPel~ 472 (560)
.+.+...++|+-.+.-++|.|+---|-+.
T Consensus 106 v~avvly~vP~r~l~l~~gly~~r~P~~R 134 (156)
T PF08372_consen 106 VAAVVLYFVPFRVLVLIWGLYKLRHPRFR 134 (156)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCcccc
Confidence 33444567777776666666554345554
No 140
>PRK06041 flagellar assembly protein J; Reviewed
Probab=20.81 E-value=1.3e+03 Score=26.49 Aligned_cols=12 Identities=8% Similarity=-0.003 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 008601 397 LEGIRKNAREMI 408 (560)
Q Consensus 397 L~dI~d~~~rll 408 (560)
|+|..+++...+
T Consensus 143 l~~fl~~l~~~i 154 (553)
T PRK06041 143 FADFLDRLAYSI 154 (553)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 141
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.68 E-value=1.1e+02 Score=27.96 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008601 479 GLFTAILFFIGVVLIAVGLLY 499 (560)
Q Consensus 479 ~i~l~imvlia~vl~~~~l~y 499 (560)
|+++++++++ ++++++++.+
T Consensus 2 W~l~~iii~~-i~l~~~~~~~ 21 (130)
T PF12273_consen 2 WVLFAIIIVA-ILLFLFLFYC 21 (130)
T ss_pred eeeHHHHHHH-HHHHHHHHHH
Confidence 4455544443 3333344333
No 142
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=20.53 E-value=8.5e+02 Score=24.24 Aligned_cols=17 Identities=12% Similarity=-0.082 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008601 326 RKTIFGAADEIELKFVN 342 (560)
Q Consensus 326 le~ie~~ldeLE~~v~~ 342 (560)
+-.+.+++..+++....
T Consensus 34 ~~~~~~~~~~~~~~~~~ 50 (216)
T COG0811 34 LALAGERLSLFEKRFWS 50 (216)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34456667777744433
No 143
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.50 E-value=68 Score=33.10 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008601 444 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK 503 (560)
Q Consensus 444 LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k 503 (560)
+.+++++|+.+.+ ||.+.-..-.+ ..-|.|++++++++++++++.=++.|+-.|
T Consensus 201 f~llgllfliiai-----gltvGT~~~A~-~~~giY~~wv~~~l~a~~~~~rs~yy~~mk 254 (256)
T PF09788_consen 201 FFLLGLLFLIIAI-----GLTVGTWTYAK-TYGGIYVSWVGLFLIALICLIRSIYYCCMK 254 (256)
T ss_pred HHHHHHHHHHHHH-----HHhhhhHHHHh-hcCcEeHHHHHHHHHHHHHHHHhheeEEEe
Confidence 5555555544333 33333122223 334667777777788877777776665443
No 144
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=20.43 E-value=83 Score=29.20 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=30.5
Q ss_pred HHHHHhhcccCCCCCCC------CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008601 454 LTVITGLFGINVDGIPG------ADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP 505 (560)
Q Consensus 454 LTfIaGiyGMNF~~MPe------l~~~pyGy~i~l~imvlia~vl~~~~l~y~~~k~~ 505 (560)
..++-|..++|=...|. .++..+.|++++++|.+.++.++.+-+-|.+-||-
T Consensus 14 ~~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK~ 71 (129)
T PF02060_consen 14 SKLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKKR 71 (129)
T ss_dssp HHHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667777776333331 12234568888888888888777777777765543
No 145
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.26 E-value=7.5e+02 Score=30.61 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHH
Q 008601 443 NLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILF 486 (560)
Q Consensus 443 ~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imv 486 (560)
.||.+ +.|+|+.|+.|.-|--|. |.|..+++++++
T Consensus 456 tlTti-~~flPl~~~~g~~g~~~~--------~~~~~v~~~l~~ 490 (1051)
T TIGR00914 456 QLIIT-LVFLPIFTLTGVEGKMFH--------PMAFTVVLALAG 490 (1051)
T ss_pred HHHHH-HHHHHHHHccchHHHHhH--------HHHHHHHHHHHH
Confidence 34443 578999999999888663 555555554443
No 146
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=20.08 E-value=3.6e+02 Score=27.97 Aligned_cols=55 Identities=24% Similarity=0.105 Sum_probs=32.5
Q ss_pred ccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh----------hccCCcchhHHHHHHHHH
Q 008601 462 GINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYL----------GLKKPITEEQVEVRKLEL 518 (560)
Q Consensus 462 GMNF~~MPel~~~pyGy~i~l~imvlia~vl~~~~l~y~----------~~k~~~~~~~~~~~~~~~ 518 (560)
|=+|++|=|++ +|---|+++++.+.|.+.+++ .+.|- |+-.|-+..+++.+..+.
T Consensus 13 ~h~~dgi~E~~-n~~P~ww~~~f~~~i~~~~~y-~~~yp~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 77 (285)
T TIGR00782 13 GHEWDGIEEYD-NPLPRWWLWTFYATIVWGFGY-LVAYPAWPLVSGATKGLLGWSSRSQVEEEIKKF 77 (285)
T ss_pred CCCcCChhhhc-CCCCHHHHHHHHHHHHHHHHH-HHHhcccCCccccCCCccCcCHHHHHHHHHHHH
Confidence 45788999999 788766666655555444444 22332 333466666666554433
Done!