Query 008601
Match_columns 560
No_of_seqs 184 out of 1342
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iub_A CORA, divalent cation t 100.0 1.2E-52 4.2E-57 441.9 34.7 290 180-506 69-363 (363)
2 4ev6_A Magnesium transport pro 100.0 1E-51 3.5E-56 431.0 36.1 289 178-506 46-339 (339)
3 4egw_A Magnesium transport pro 100.0 3.1E-32 1.1E-36 276.5 28.4 230 178-442 46-280 (280)
4 3ck6_A Putative membrane trans 100.0 1.3E-30 4.5E-35 259.9 23.5 218 183-441 32-252 (252)
5 3nvo_A Zinc transport protein 100.0 2.6E-30 8.9E-35 259.2 25.1 219 180-429 40-261 (264)
6 2bbh_A Divalent cation transpo 99.9 1.4E-25 4.7E-30 225.5 21.9 205 180-412 60-269 (269)
7 2hn1_A CORA, magnesium and cob 99.9 5.8E-25 2E-29 221.0 20.5 198 179-408 64-265 (266)
8 2iub_A CORA, divalent cation t 95.2 1.4 4.7E-05 45.6 20.1 60 403-462 262-321 (363)
9 4ev6_A Magnesium transport pro 94.8 0.88 3E-05 46.7 17.0 124 356-492 202-332 (339)
10 3nvo_A Zinc transport protein 71.2 15 0.00051 35.6 9.1 64 356-421 192-260 (264)
11 4egw_A Magnesium transport pro 65.3 17 0.00057 35.8 8.1 23 356-378 202-224 (280)
12 3ck6_A Putative membrane trans 59.1 48 0.0017 31.7 10.1 67 356-424 176-246 (252)
13 3ghg_A Fibrinogen alpha chain; 38.5 3E+02 0.01 30.0 12.7 26 310-336 51-76 (562)
14 3rkg_A Magnesium transporter M 38.0 3.1E+02 0.01 27.1 21.5 192 195-429 37-254 (261)
15 2etd_A LEMA protein; bromodoma 33.9 2.8E+02 0.0097 25.5 14.9 54 404-472 105-158 (171)
16 2oar_A Large-conductance mecha 31.5 37 0.0013 31.8 3.9 44 447-493 58-109 (174)
17 1deq_A Fibrinogen (alpha chain 28.5 4.4E+02 0.015 27.5 11.6 25 312-337 56-80 (390)
18 3mk7_C Cytochrome C oxidase, C 28.1 3.5E+02 0.012 26.7 10.8 48 442-490 10-68 (311)
19 3hd7_B Syntaxin-1A; membrane p 26.7 2.9E+02 0.0099 23.3 14.6 53 359-413 15-67 (109)
20 3rvy_A ION transport protein; 25.3 67 0.0023 31.3 4.8 35 474-508 209-245 (285)
21 1scf_A Stem cell factor; steel 25.3 15 0.00051 36.2 0.0 42 492-535 229-273 (273)
22 1i6z_A BAG-family molecular ch 24.0 3.9E+02 0.013 23.9 9.8 87 325-424 36-125 (135)
23 2qij_C Core antigen; viral cap 20.7 22 0.00075 32.0 0.1 25 454-479 1-25 (157)
No 1
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=1.2e-52 Score=441.93 Aligned_cols=290 Identities=17% Similarity=0.167 Sum_probs=240.5
Q ss_pred CCeEEEEecCC-CHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCccccc
Q 008601 180 GPVWWCHMLAG-HPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP 258 (560)
Q Consensus 180 ~~~~WIdl~~p-t~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t 258 (560)
+.++|||+..| +++++++|++.|||||++++|+++.++ ||| ++.+++++|++++.+.. ++..+... +
T Consensus 69 ~~~~Wi~l~~p~~~~e~~~l~~~f~l~~l~ied~l~~~~----rpk------~e~~~~~lfivl~~~~~-~~~~~~~~-~ 136 (363)
T 2iub_A 69 STPTWINITGIHRTDVVQRVGEFFGIHPLVLEDILNVHQ----RPK------VEFFENYVFIVLKMFTY-DKNLHELE-S 136 (363)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHTTCCHHHHHHHHCCSS----CCE------EEEETTEEEEEEEEEEE-ETTTTEEE-E
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHcCcChhHHHHHhCCCC----CCe------EEEECCEEEEEEEeeee-cccccccc-e
Confidence 45789999999 599999999999999999999999886 688 89999999999998765 22211112 4
Q ss_pred EEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008601 259 IVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN-VPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE 337 (560)
Q Consensus 259 ~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~-~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE 337 (560)
.+++||+++++|||+++. +...++.+++++.+++.. ...++..+++.|++.++|.|.+ +++.+++++++||
T Consensus 137 ~~v~~~l~~~~liTv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE 208 (363)
T 2iub_A 137 EQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV-LLEKIDDEIDVLE 208 (363)
T ss_dssp EEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred EEEEEEEECCEEEEEEeC-------CCchHHHHHHHHHhcCCccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 899999999999999996 577889999999876311 2347888999999999999999 9999999999999
Q ss_pred HHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 008601 338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAV 414 (560)
Q Consensus 338 ~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~leal 414 (560)
++++..+.+. .+++|+.+||+++++|+++.|+++++..|.+ ....++.+.+++|+.+|+.++.+.++.+
T Consensus 209 ~~v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~d~~~~~~e~~~~~ 280 (363)
T 2iub_A 209 EEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYFRDVYDHTIQIADTVETF 280 (363)
T ss_dssp HHTTSSCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876422 4679999999999999999999999999985 2335678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 008601 415 RGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIA 494 (560)
Q Consensus 415 re~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl~~ 494 (560)
++++..++|++.|.+ ++++|++||+||++|+||+|||||||+|||||++|||++ |+||||+++++|++++++
T Consensus 281 re~l~~l~d~~~s~i----s~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~-~~~Gy~~~l~~m~~i~~~--- 352 (363)
T 2iub_A 281 RDIVSGLLDVYLSSV----SNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR-WKWGYPVVLAVMGVIAVI--- 352 (363)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTSCC---------------CHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc-CcHHHHHHHHHHHHHHHH---
Confidence 999999999999998 799999999999999999999999999999999999999 999999999999887764
Q ss_pred HHHHHhhccCCc
Q 008601 495 VGLLYLGLKKPI 506 (560)
Q Consensus 495 ~~l~y~~~k~~~ 506 (560)
.++||++|+|+
T Consensus 353 -~~~~Fkrk~Wl 363 (363)
T 2iub_A 353 -MVVYFKKKKWL 363 (363)
T ss_dssp -HHTTTTSCC--
T ss_pred -HHHHHHHcccC
Confidence 46788889885
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1e-51 Score=431.05 Aligned_cols=289 Identities=17% Similarity=0.151 Sum_probs=256.5
Q ss_pred CCCCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccc
Q 008601 178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI 257 (560)
Q Consensus 178 ~~~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~ 257 (560)
.+..++|||+.+|+++|+++|++.|||||++++|+++.++ ||| ++.+++++|++++.+.. +++ . +
T Consensus 46 ~d~~~vWIdl~~Pt~~E~~~l~~~~~l~~~~~ed~l~~~~----rpk------~e~~~~~~~iv~~~~~~-~~~--~-~- 110 (339)
T 4ev6_A 46 EDYRLIWIDCYDPKDEELYKLSKKIGISVSDLQIGLDEQE----IPR------VEEDEDFYLIIYKAPLF-EED--I-T- 110 (339)
T ss_dssp SSCSCEEEEEESCCHHHHHHHHHHHTCCHHHHHHHHCTTC----CCE------EEEETTEEEEECCCCCC-TTT--C-C-
T ss_pred cCCCEEEEEeCCCCHHHHHHHHHHHCcCHhHHHHhhCCcc----CCe------EEEECCEEEEEEecCcc-CCC--c-c-
Confidence 3455889999999999999999999999999999999987 688 89999999999987654 222 1 1
Q ss_pred cEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCC--CCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008601 258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN--VPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADE 335 (560)
Q Consensus 258 t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~--~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~lde 335 (560)
+.++++|+++++|||+|+. +...++.+++++..++.. ...++..++++|++.++|.|.+ +++.+++++++
T Consensus 111 ~~~v~i~l~~~~lITv~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lld~ivd~~~~-~l~~l~~~i~~ 182 (339)
T 4ev6_A 111 TTSLGIYIKNNLLLTIHSD-------KIKAIGRLHKLISTKKPRIVFERGIGFLLYHILNEITRSYSR-ILMNLEDELEE 182 (339)
T ss_dssp CCCCEEEEETTEEEEEESS-------CCHHHHHHHHHSSSSSSCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred eEEEEEEEECCeeEEeecC-------CcchhHHHHHHHHcCCCccccccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4789999999999999996 688899999988765421 2457899999999999999999 99999999999
Q ss_pred HHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHH
Q 008601 336 IELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQE 412 (560)
Q Consensus 336 LE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~le 412 (560)
||++++.++.++ .+++|+.+||+++++|+++.|+++++..|.+ ....++.+.+++|+.+++.++.+.++
T Consensus 183 lE~~l~~~~~~~--------~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~~~~~~~~l~dv~~~~~~l~e~~~ 254 (339)
T 4ev6_A 183 LEDKLLAGYDRE--------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDLYYDTLQLIDMSA 254 (339)
T ss_dssp HHHTSTTCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhh--------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876432 5679999999999999999999999999985 23467889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 008601 413 AVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVL 492 (560)
Q Consensus 413 alre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~~~pyGy~i~l~imvlia~vl 492 (560)
.+++++..++|++.|.+ |+++|++||+||++|+||+|||||||+|||||++|||++ ||||||+++++|+++++++
T Consensus 255 ~~~e~l~~l~d~~~s~i----s~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~-~~~gy~~~l~~m~~~~~~~ 329 (339)
T 4ev6_A 255 TYREVLTSMMDITLSLE----NIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLAN-NPQGFWLVMALMVVIIMIF 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSS-CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCcc-CchHHHHHHHHHHHHHHHH
Confidence 99999999999999998 799999999999999999999999999999999999999 9999999999999887764
Q ss_pred HHHHHHHhhccCCc
Q 008601 493 IAVGLLYLGLKKPI 506 (560)
Q Consensus 493 ~~~~l~y~~~k~~~ 506 (560)
+.||++|+|+
T Consensus 330 ----~~~fkrk~WL 339 (339)
T 4ev6_A 330 ----VYIFRRSGWI 339 (339)
T ss_dssp ----HHHHHTTTCC
T ss_pred ----HHHHHHcCCC
Confidence 4578999985
No 3
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.1e-32 Score=276.48 Aligned_cols=230 Identities=14% Similarity=0.107 Sum_probs=196.4
Q ss_pred CCCCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccc
Q 008601 178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI 257 (560)
Q Consensus 178 ~~~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~ 257 (560)
.+..++|||+.+|+++++++|++.|||||++++|+++.++ ||| ++.+++++|++++.+.. +++ ..
T Consensus 46 ~d~~~vWIdl~~Pt~eEl~~l~~~f~lh~l~leD~l~~~~----rpK------ie~~~d~~fivl~~~~~-~~~--~~-- 110 (280)
T 4egw_A 46 EDYRLIWIDCYDPKDEELYKLSKKIGISVSDLQIGLDEQE----IPR------VEEDEDFYLIIYKAPLF-EED--IT-- 110 (280)
T ss_dssp TSSSCEEEEEESCCHHHHHHHHHHHTCCHHHHHHHTCTTC----CCE------EECCSSSEEEEEEEEEC-SSS--CE--
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHHCcCHHHHHHHhCccc----Cce------EEEECCEEEEEEEeccc-ccc--ce--
Confidence 4456889999999999999999999999999999999986 688 89999999999998765 221 11
Q ss_pred cEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008601 258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNV--PRTVHEVIAHLACRLSRWDDRLFRKTIFGAADE 335 (560)
Q Consensus 258 t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~--~~s~~~Ll~~Lld~lid~~~~~~le~ie~~lde 335 (560)
+.+++||+++++||||++. +...++.+++++..++... ..++..++++|++.++|.|.+ +++.+++++++
T Consensus 111 t~~v~i~l~~~~lITv~~~-------~~~~~~~v~~~l~~~~~~~~~~~g~~~ll~~lld~ivd~y~~-~l~~i~~~id~ 182 (280)
T 4egw_A 111 TTSLGIYIKNNLLLTIHSD-------KIKAIGRLHKLISTKKPRIVFERGIGFLLYHILNEITRSYSR-ILMNLEDELEE 182 (280)
T ss_dssp EEEEEEEEETTEEEEEESS-------CCHHHHHHHHHHHHSCCSSSCTTTTTHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred eeeEEEEEECCEEEEEecC-------CcchHHHHHHHHHhcCcccccccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5899999999999999996 6889999999998765221 356889999999999999999 99999999999
Q ss_pred HHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHH
Q 008601 336 IELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQE 412 (560)
Q Consensus 336 LE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~le 412 (560)
||++++..+.++ .+.+|+.+||+++++||++.|+++++..|.+ ....++.+.||+|+++|+.++.+.++
T Consensus 183 lE~~l~~~~~~~--------~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~Dv~dh~~~~~e~~~ 254 (280)
T 4egw_A 183 LEDKLLAGYDRE--------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFEDLYYDTLQLIDMSA 254 (280)
T ss_dssp HHHHTTTCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCchh--------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876532 4679999999999999999999999999985 23467889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 413 AVRGRLFTIQDVMQSTVRAWLQDRSLRVTH 442 (560)
Q Consensus 413 alre~l~~L~D~~~S~vs~~~n~r~N~vMK 442 (560)
.+++.+..++|+|.|.+ |++||++||
T Consensus 255 ~~re~l~~l~d~~~s~i----s~~~N~iMK 280 (280)
T 4egw_A 255 TYREVLTSMMDITLSLE----NIKMNQIMK 280 (280)
T ss_dssp HHHHHHHHHHHHHHHHC----C--------
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhhC
Confidence 99999999999999999 799999998
No 4
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.97 E-value=1.3e-30 Score=259.90 Aligned_cols=218 Identities=16% Similarity=0.206 Sum_probs=190.0
Q ss_pred EEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECC-EEEEEEeccccCCCCCCcccccEEE
Q 008601 183 WWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAG-GLLFELLGQSAGDPFVDEDDIPIVL 261 (560)
Q Consensus 183 ~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d-~lfiiL~~~~~~~~~~e~~d~t~~L 261 (560)
+|||+..|++++++||++. ||||++++++++.++ ||| ++.+++ ++|++++++.. ++...+.+ ++++
T Consensus 32 ~Wi~l~~p~~~e~~~l~~~-~l~~l~~ed~l~~~~----rpk------~e~~~d~~lfivl~~~~~-~~~~~~~~-~~~l 98 (252)
T 3ck6_A 32 HWYHCERLHPDIRGWLEDN-HVPRATVDHLLADES----RPS------FHPLDDDNFMLILRGINM-NENASPED-MLSI 98 (252)
T ss_dssp EEEEEETTCTTHHHHHHHT-TCCHHHHHHHHCSSC----CCE------EEECSTTCEEEEEEECCC-STTCCTTS-CEEE
T ss_pred EEEEecCCCHHHHHHHHHc-CCCHHHHHHHhCCCC----CCc------eEEeCCceEEEEEecCcc-CCCCCccc-EEEE
Confidence 7999999999999999999 999999999999987 688 899999 99999999876 33322333 4899
Q ss_pred EEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 008601 262 RSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFV 341 (560)
Q Consensus 262 ~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~v~ 341 (560)
+||+++++|||+++. +...++.+++++.+++ .+.++.+++++|++.++|.|.+ +++.+++++++||++
T Consensus 99 ~i~l~~~~lITvr~~-------~~~~~~~v~~~l~~~~--~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE~~-- 166 (252)
T 3ck6_A 99 RILYFQGALISTRKI-------PSRAIMEIRQALAEHK--GPKSLASLLNQIIEGLNGKIDL-YLDTIEETLNEFDVN-- 166 (252)
T ss_dssp EEEEETTEEEEEESS-------CCHHHHHHHHHHHTTC--SCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTCCTT--
T ss_pred EEEEeCCEEEEEeCC-------CcchHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC--
Confidence 999999999999996 6889999999998875 5678999999999999999999 999999999999987
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 342 NRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--LRGNVARTLLEGIRKNAREMIEEQEAVRGRLF 419 (560)
Q Consensus 342 ~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~~--l~~~~~~~~L~dI~d~~~rlle~lealre~l~ 419 (560)
. + .+.+|+.+||+++++||++.|+++++.+|.+. ...++.+.||+|+++|+.++.+.++++++++.
T Consensus 167 ~----~--------~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~~~~~~~~~rdv~d~~~~~~e~i~~~re~~~ 234 (252)
T 3ck6_A 167 D----E--------STYNHIAAQKALISIKRFIRPQQYAIRDLIESESELVTSRPHQYRFAHNNITRINETIEFYLGEVA 234 (252)
T ss_dssp C----G--------GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c----h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 23589999999999999999999999999851 13457789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008601 420 TIQDVMQSTVRAWLQDRSLRVT 441 (560)
Q Consensus 420 ~L~D~~~S~vs~~~n~r~N~vM 441 (560)
.++|.|++.+ +++||++|
T Consensus 235 ~l~d~~~s~~----s~~~N~~m 252 (252)
T 3ck6_A 235 LFQDEIKHNR----DEKTNKNS 252 (252)
T ss_dssp HHHHHHHHHH----HHC-----
T ss_pred HHHHHHHHHH----HHHHccCC
Confidence 9999999999 79999987
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.97 E-value=2.6e-30 Score=259.23 Aligned_cols=219 Identities=18% Similarity=0.263 Sum_probs=187.6
Q ss_pred CCeEEEEecCCCHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccccE
Q 008601 180 GPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPI 259 (560)
Q Consensus 180 ~~~~WIdl~~pt~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t~ 259 (560)
+.++|||+..|++++++||.+.|||||++++++++.++ ||| ++.+++++|++++.+.. ++..+..+ +.
T Consensus 40 ~~~~Wi~l~~p~~~e~~~l~~~~~l~~l~~ed~~~~~~----rpk------~e~~~~~~fivl~~~~~-~~~~~~~~-~~ 107 (264)
T 3nvo_A 40 QHPCWLHLNYTHPDSARWLASTPLLPNNVRDALAGESS----RPR------VSRMGEGTLITLRCING-STDERPDQ-LV 107 (264)
T ss_dssp TSCEEEEEETTSHHHHHHHHHCTTSCTTTHHHHTTCCC----SCE------EEEETTEEEEEEECC------------CC
T ss_pred CCCEEEEeCCCCHHHHHHHHhccCCCHHHHHHHhCCCC----CCc------eEEECCEEEEEEEeccc-CCCCCCcc-eE
Confidence 34789999999999999999999999999999999886 688 89999999999998876 33322223 48
Q ss_pred EEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 008601 260 VLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELK 339 (560)
Q Consensus 260 ~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE~~ 339 (560)
+++||+++++|||+++. +...++.+++++.+++ .+.++..++++|++.++|.|.+ +++.+++++++||+.
T Consensus 108 ~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~--~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE~~ 177 (264)
T 3nvo_A 108 AMRLYMDERFIVSTRQR-------KVLALDDVVSDLQEGT--GPVDCGGWLVDVCDALTDHASE-FIEELHDKIIDLEDN 177 (264)
T ss_dssp EEEEEECSSEEEEEESS-------CCHHHHHHHHHHHTTC--SCSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred EEEEEEeCCEEEEEecC-------CcCcHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999996 6889999999999886 5678999999999999999999 999999999999999
Q ss_pred hhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 340 FVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAVRG 416 (560)
Q Consensus 340 v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~lealre 416 (560)
++.. .+.. +.+|+.+||+++++||++.|+++++.+|.+ ....++.+.||+|+.+|+.++++.++++++
T Consensus 178 l~~~-~~~~--------l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~e~~~~~re 248 (264)
T 3nvo_A 178 LLDQ-QIPP--------RGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIA 248 (264)
T ss_dssp -----CCCC--------TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcC-Cchh--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9977 4332 469999999999999999999999999985 234678999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008601 417 RLFTIQDVMQSTV 429 (560)
Q Consensus 417 ~l~~L~D~~~S~v 429 (560)
++..++|.|+|.+
T Consensus 249 ~l~~l~d~~~s~~ 261 (264)
T 3nvo_A 249 RTGIMADEIAQVM 261 (264)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888776
No 6
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.94 E-value=1.4e-25 Score=225.46 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=151.0
Q ss_pred CCeEEEEecCC-CHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCccccc
Q 008601 180 GPVWWCHMLAG-HPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP 258 (560)
Q Consensus 180 ~~~~WIdl~~p-t~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t 258 (560)
+.++|||+..| ++++++||.+.||||+++++++++.++ ||| ++.+++++|++++.+.. ++...... +
T Consensus 60 ~~~~Wi~l~~p~~~~e~~~l~~~f~l~~l~~ed~l~~~~----rpk------~e~~~d~lfivl~~~~~-~~~~~~~~-~ 127 (269)
T 2bbh_A 60 STPTWINITGIHRTDVVQRVGEFFGTHPLVLEDILNVHQ----RPK------VEFFENYVFIVLKMFTY-DKNLHELE-S 127 (269)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHTCCHHHHHHHHCTTC----CCE------EEECSSEEEEEEEEEEC-CC--CCCE-E
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCHhHHHHHhCcCC----Cce------EEEECCEEEEEEEeeee-cCCcCcee-E
Confidence 35789999998 899999999999999999999999887 688 89999999999998865 32211112 4
Q ss_pred EEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008601 259 IVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVG-GYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE 337 (560)
Q Consensus 259 ~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g-~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE 337 (560)
.+++||+++++|||+++. +...++.+++++.++ +.....++..++++|++.++|.|.+ +++.+++++++||
T Consensus 128 ~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~i~~~id~lE 199 (269)
T 2bbh_A 128 EQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV-LLEKIDDEIDVLE 199 (269)
T ss_dssp EEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTGGGSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred EEEEEEEECCEEEEEECC-------CCCcHHHHHHHHHhcCCchhhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 899999999999999996 577889999999887 3112357778999999999999999 9999999999999
Q ss_pred HHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHHHHHH
Q 008601 338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQE 412 (560)
Q Consensus 338 ~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rlle~le 412 (560)
++++..+.+. .+.+|+.+||+++++|+++.|+++++.+|.+ .+..++.+.||+|+++|+.++.+.++
T Consensus 200 ~~v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~dh~~r~~e~~e 269 (269)
T 2bbh_A 200 EEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYFRDVYDHTIQIADTVE 269 (269)
T ss_dssp HCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred HHHhcCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999875432 3579999999999999999999999999985 33466888999999999999988754
No 7
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.93 E-value=5.8e-25 Score=220.96 Aligned_cols=198 Identities=12% Similarity=0.073 Sum_probs=171.4
Q ss_pred CCCeEEEEecCC-CHHHHHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccc
Q 008601 179 AGPVWWCHMLAG-HPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI 257 (560)
Q Consensus 179 ~~~~~WIdl~~p-t~~e~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~ 257 (560)
.+.++|||+..| ++++++||.+.||||+++++++++.++ ||| ++.+++++|++++.+.. ++ .. .
T Consensus 64 ~~~~~Wi~l~~p~~~~e~~~l~~~f~l~~l~~ed~l~~~~----rpk------~e~~~d~lfivl~~~~~-~~--~~-~- 128 (266)
T 2hn1_A 64 LNKKLWIDVVGVHDESLIAKICEFLGIHPLAAEDILNTAQ----RVK------IEDYDDHLFLVLKILLY-NE--TL-E- 128 (266)
T ss_dssp TTSEEEEEECCCCCHHHHHHHHHTTTCCHHHHHHHHBTTC----CSE------EEECSSEEEEEEEEEEE-SS--SE-E-
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHcCCCHhHHHHHhCCCC----CCe------EEEECCEEEEEEEeccc-cC--cc-c-
Confidence 345889999998 899999999999999999999999887 688 89999999999998865 32 21 2
Q ss_pred cEEEEEEEeCCEEEEEEecCCCCCCCCcccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008601 258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE 337 (560)
Q Consensus 258 t~~L~~~l~~n~LITv~~~~g~~~~~~~~~i~ev~e~l~~g~~~~~~s~~~Ll~~Lld~lid~~~~~~le~ie~~ldeLE 337 (560)
+.+++||+++++|||+++. +...++.+++++.+++.....++..++++|++.++|.|.+ +++.+++++++||
T Consensus 129 ~~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~i~~~id~lE 200 (266)
T 2hn1_A 129 IDQLSLVLKKNLVATFEER-------EYWILDSIRSRLKSGGRMRKLAGDYLAYTILDAVVDSYFE-ALLKISDEIEVLE 200 (266)
T ss_dssp EEEEEEEEETTEEEEEESS-------SSCSTHHHHHHHHSSSHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEEcC-------CCChHHHHHHHHHhCCchhhcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4899999999999999996 6778899999998763111267888999999999999999 9999999999999
Q ss_pred HHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcChhHHHHHHHHHHHHHHHH
Q 008601 338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMI 408 (560)
Q Consensus 338 ~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~---~l~~~~~~~~L~dI~d~~~rll 408 (560)
++++..+. .. +.+|+.+||+++++|+++.|+++++.+|.+ .+..++.+.||+|+.+|+.+++
T Consensus 201 ~~l~~~~~-~~--------l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~dh~~r~~ 265 (266)
T 2hn1_A 201 DEVVSGDS-TL--------IGKIHSLKREILAFRNAVWPLRDVLSFFTRVEHELIGEEVKVYYRDVYDHAVRLM 265 (266)
T ss_dssp HHHHTTTC-CC--------CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCTTSCTTTHHHHHHHHHHHHHHT
T ss_pred HHHhcCcH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHh
Confidence 99998764 32 468999999999999999999999999985 2345688899999999999875
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=95.25 E-value=1.4 Score=45.64 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008601 403 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 462 (560)
Q Consensus 403 ~~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyG 462 (560)
.++.+.+.+..+.+.++.+.|...+++...++...|+.=.++-++|++-+...-.|=+-|
T Consensus 262 ~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaG 321 (363)
T 2iub_A 262 YFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAG 321 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444444444444444444444444444
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=94.84 E-value=0.88 Score=46.65 Aligned_cols=124 Identities=9% Similarity=0.084 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 356 LNQEIRRLSRQVIRVKWSLHAREEIVFEL-----YQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVR 430 (560)
Q Consensus 356 ~l~~I~~LRr~li~Lrr~L~~~revl~~L-----~~~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~~~S~vs 430 (560)
+.+++..+|+.+...+..+......-... ...+. +....+..+.+.+..+-+.+..+.+...++.+ ..+
T Consensus 202 lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~~~~~~~~l~--dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is---~~~- 275 (339)
T 4ev6_A 202 LRKTLVYFHKSLIANRDVLVLLKRKYLPITTKEDRENFE--DLYYDTLQLIDMSATYREVLTSMMDITLSLEN---IKM- 275 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCBTTBCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhhccccccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-
Confidence 34567777777777776665444321111 11121 22222334445555555555555554444433 232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-ccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 008601 431 AWLQDRSLRVTHNLAVFGGCGVVLTVITGL-F-GINVDGIPGADNTPYAFGLFTAILFFIGVVL 492 (560)
Q Consensus 431 ~~~n~r~N~vMK~LTVvSaIFLPLTfIaGi-y-GMNF~~MPel~~~pyGy~i~l~imvlia~vl 492 (560)
|+.-+++-++|++-+...-+|=|-|+ | ||-+-+-|.. +++. ++++++++++.++.
T Consensus 276 ----N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~g--y~~~-l~~m~~~~~~~~~~ 332 (339)
T 4ev6_A 276 ----NQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQG--FWLV-MALMVVIIMIFVYI 332 (339)
T ss_dssp ----HHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTH--HHHH-HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchH--HHHH-HHHHHHHHHHHHHH
Confidence 33445666777777777777778887 3 5866656643 4444 44444444444444
No 10
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=71.21 E-value=15 Score=35.56 Aligned_cols=64 Identities=6% Similarity=0.007 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 356 LNQEIRRLSRQVIRVKWSLHAREEI----VF-ELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTI 421 (560)
Q Consensus 356 ~l~~I~~LRr~li~Lrr~L~~~rev----l~-~L~~~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L 421 (560)
+.+++..+||.+..++..+.....- +. .....+. +....+..+.+.+..+-+.+..+++...+.
T Consensus 192 lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~--Dv~d~~~~~~e~~~~~re~l~~l~d~~~s~ 260 (264)
T 3nvo_A 192 LRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQ--DIADRLGRGLDEIDACIARTGIMADEIAQV 260 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999988887655321 11 1111121 223334444555555555555555554443
No 11
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=65.26 E-value=17 Score=35.81 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008601 356 LNQEIRRLSRQVIRVKWSLHARE 378 (560)
Q Consensus 356 ~l~~I~~LRr~li~Lrr~L~~~r 378 (560)
+.+++..+||.+..++..+....
T Consensus 202 lrr~l~~lrr~l~p~~~vl~~L~ 224 (280)
T 4egw_A 202 LRKTLVYFHKSLIANRDVLVLLK 224 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677788888888777776554
No 12
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=59.08 E-value=48 Score=31.66 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008601 356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDV 424 (560)
Q Consensus 356 ~l~~I~~LRr~li~Lrr~L~~~revl~~L~~----~l~~~~~~~~L~dI~d~~~rlle~lealre~l~~L~D~ 424 (560)
+.+++..+||.+..++..+......-..+.. .+ .+....+..+.+.+..+-+.+..+++...++...
T Consensus 176 lrr~l~~lrr~l~p~r~~l~~L~r~~~~~~~~~~~~~--rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~ 246 (252)
T 3ck6_A 176 AQKALISIKRFIRPQQYAIRDLIESESELVTSRPHQY--RFAHNNITRINETIEFYLGEVALFQDEIKHNRDE 246 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999998888887665431111221 22 1344456666666777777777766665555543
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.45 E-value=3e+02 Score=29.96 Aligned_cols=26 Identities=8% Similarity=-0.133 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 008601 310 IAHLACRLSRWDDRLFRKTIFGAADEI 336 (560)
Q Consensus 310 l~~Lld~lid~~~~~~le~ie~~ldeL 336 (560)
+.-+|+.--..+.. .|++|..+++++
T Consensus 51 LQglLdkqErDltk-rINELKnqLEdl 76 (562)
T 3ghg_A 51 MKGLIDEVNQDFTN-RINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHTHH
T ss_pred hhhhHHhhcCcHHH-HHHHHHHHHHHH
Confidence 34444444433444 566666666666
No 14
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=37.95 E-value=3.1e+02 Score=27.05 Aligned_cols=192 Identities=9% Similarity=0.048 Sum_probs=98.2
Q ss_pred HHHHHhhcCCCHHHHHHhhccchhhhhhhhcccccceEEECCEEEEEEeccccCCCCCCcccccEEEEEEEeCCEEEEEE
Q 008601 195 EAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITAL 274 (560)
Q Consensus 195 ~~~L~~~fgLhpl~~edlld~~~~~s~RpK~~~ye~~e~~~d~lfiiL~~~~~~~~~~e~~d~t~~L~~~l~~n~LITv~ 274 (560)
...+.+.+||+|..+--+....... -|. +...++.+++.+ ..++.+++.+.++-+.
T Consensus 37 K~~l~~~~~L~~RDLR~ld~~~~~~--~Ps------Il~R~~aIlvnL----------------~~irAII~~d~Vllfd 92 (261)
T 3rkg_A 37 KWSFLTEHSLFPRDLRKIDNSSIDI--IPT------IMCKPNCIVINL----------------LHIKALIERDKVYVFD 92 (261)
T ss_dssp HHHHHHHTTCCGGGGGGTSSCCSSC--CCE------EEECSSCEEEEE----------------TTEEEEECSSCEEEEC
T ss_pred HHHHHHHcCCChhhHHHhcccccCC--Cce------EEecCCeEEEec----------------hhceEEEEcceEEEEc
Confidence 5667788999997665432211000 122 333344444333 2356677777777775
Q ss_pred ecCCCCCCCCc-----ccHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHhhccc
Q 008601 275 HVKGPVSSNNV-----LGITEVQELLFVGGYNVPRTVHEV--IAHLACRLSRWDDRL---FRKTIFGAADEIELKFVNRR 344 (560)
Q Consensus 275 ~~~g~~~~~~~-----~~i~ev~e~l~~g~~~~~~s~~~L--l~~Lld~lid~~~~~---~le~ie~~ldeLE~~v~~~~ 344 (560)
... + .. ..+.++..++..+. ...-|.+| +..++...+..+... .-......+++|+..+-.
T Consensus 93 ~~~-~----~~~~~~~~f~~~l~~~l~~~~--~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~-- 163 (261)
T 3rkg_A 93 TTN-P----SAAAKLSVLMYDLESKLSSTK--NNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNR-- 163 (261)
T ss_dssp CSC-H----HHHHHHHHHHHHHHHHHHCSS--CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH--
T ss_pred CCC-c----hhhhhHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--
Confidence 531 0 01 12234555555442 12234443 334444444443330 223334455556544311
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhc-------C-hhHHHHHHHHHHHHHHHH
Q 008601 345 NLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ--------HLR-------G-NVARTLLEGIRKNAREMI 408 (560)
Q Consensus 345 ~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~--------~l~-------~-~~~~~~L~dI~d~~~rll 408 (560)
+ -++++...++.+..+..-....++++.+++. .+. + ++....|+-=+.++..+.
T Consensus 164 ---~-------~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~~~~d~eElEmLLE~Y~~q~d~~~ 233 (261)
T 3rkg_A 164 ---L-------KLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDNFSDLEMLIETYYTQCDEYV 233 (261)
T ss_dssp ---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCCTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---H-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 1 3456666777888887777788888888873 121 1 111223344455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008601 409 EEQEAVRGRLFTIQDVMQSTV 429 (560)
Q Consensus 409 e~lealre~l~~L~D~~~S~v 429 (560)
+.++.+++.+....|.+.-.+
T Consensus 234 ~~~~~L~~~I~~TEe~i~i~L 254 (261)
T 3rkg_A 234 QQSESLIQDIKSTEEIVNIIL 254 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555444
No 15
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=33.89 E-value=2.8e+02 Score=25.46 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 008601 404 AREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGAD 472 (560)
Q Consensus 404 ~~rlle~lealre~l~~L~D~~~S~vs~~~n~r~N~vMK~LTVvSaIFLPLTfIaGiyGMNF~~MPel~ 472 (560)
...+.++++..-+++......|...+ ..-|..++ -.|..+|+|+||+ +-+|..+
T Consensus 105 f~~Lq~eL~~~EnrIa~ARr~YN~aV-----~~yN~~i~--------~FP~~ivA~l~gf--~~~~~f~ 158 (171)
T 2etd_A 105 FRQLMDELAGTENRIAVARRDYNEAV-----XXYNTAIX--------XFPGVIFAXMFGF--EEXQYFE 158 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHC--------C----------CC--CCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhcccc--------cCcHHHHHHHhCC--CCCchhh
Confidence 34455666666677777777777776 34554222 2699999999986 4466554
No 16
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=31.51 E-value=37 Score=31.77 Aligned_cols=44 Identities=14% Similarity=-0.069 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCC--------CCCCCchHHHHHHHHHHHHHHHH
Q 008601 447 FGGCGVVLTVITGLFGINVDGIPG--------ADNTPYAFGLFTAILFFIGVVLI 493 (560)
Q Consensus 447 vSaIFLPLTfIaGiyGMNF~~MPe--------l~~~pyGy~i~l~imvlia~vl~ 493 (560)
+.-|.+|+-=+ +-|.||.++-. .. ..||-|+-.++-+++.+..+
T Consensus 58 V~dIImPlIgl--~Gg~dfs~l~~~l~~~~~~~~-i~yG~Fi~avInFlIIA~vI 109 (174)
T 2oar_A 58 TDSIITPLINR--IGVNAQSDVGILRIGIGGGQT-IDLNVLLSAAINFFLIAFAV 109 (174)
T ss_dssp HHHHHHHHHHH--HCCCCEEECCCCTTTCCSCEE-ECHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHh--hCCCCcccceEEEecCCCcee-eeHHHHHHHHHHHHHHHHHH
Confidence 45577886333 33678876531 12 47787776666554444333
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.47 E-value=4.4e+02 Score=27.51 Aligned_cols=25 Identities=4% Similarity=-0.194 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008601 312 HLACRLSRWDDRLFRKTIFGAADEIE 337 (560)
Q Consensus 312 ~Lld~lid~~~~~~le~ie~~ldeLE 337 (560)
.+++..-..+.. .++.|...++.+.
T Consensus 56 g~Ldk~er~~~~-rIe~L~~~L~~~s 80 (390)
T 1deq_A 56 GLIDEVDQDFTS-RINKLRDSLFNYQ 80 (390)
T ss_pred HHHHHhhhhHHH-HHHHHHHHHHHHH
Confidence 334433333333 3444444444443
No 18
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=28.08 E-value=3.5e+02 Score=26.75 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHh-----------hcccCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 008601 442 HNLAVFGGCGVVLTVITG-----------LFGINVDGIPGADNTPYAFGLFTAILFFIGV 490 (560)
Q Consensus 442 K~LTVvSaIFLPLTfIaG-----------iyGMNF~~MPel~~~pyGy~i~l~imvlia~ 490 (560)
-+||+.+.+++..-++.- .=|=+|+||-|++ .|..-|+++++.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~dgi~e~~-nplp~ww~~~f~~~iv~ 68 (311)
T 3mk7_C 10 ALLTLGTIVALFWLIFATRKGESAGTTDQTMGHAFDGIEEYD-NPLPRWWFLLFIGTLVF 68 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCSSCCCCCCSCCBTTBCBCC-CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccChhhcc-CCCChHHHHHHHHHHHH
Confidence 357777777776655432 2344577888998 78876666554444444
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=26.69 E-value=2.9e+02 Score=23.32 Aligned_cols=53 Identities=13% Similarity=0.290 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHH
Q 008601 359 EIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEA 413 (560)
Q Consensus 359 ~I~~LRr~li~Lrr~L~~~revl~~L~~~l~~~~~~~~L~dI~d~~~rlle~lea 413 (560)
+|-.-.+++..+.+.+....+++..|..-+ .++...+..+.+.+....+.++.
T Consensus 15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV--~eQge~Id~Ie~nv~~a~~~v~~ 67 (109)
T 3hd7_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLV--ESQGEMIDRIEYNVEHAVDYVER 67 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555554322 13334444454444444444443
No 20
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=25.29 E-value=67 Score=31.27 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=12.4
Q ss_pred CCchHHHHHHHH--HHHHHHHHHHHHHHhhccCCcch
Q 008601 474 TPYAFGLFTAIL--FFIGVVLIAVGLLYLGLKKPITE 508 (560)
Q Consensus 474 ~pyGy~i~l~im--vlia~vl~~~~l~y~~~k~~~~~ 508 (560)
.|||+.+++..+ ..++++-+.+|++.=.+.....+
T Consensus 209 ~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 209 YPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355543333322 23333344455555555444433
No 21
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=25.27 E-value=15 Score=36.20 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCc---chhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008601 492 LIAVGLLYLGLKKPI---TEEQVEVRKLELQELVKKFQHEAETHAQV 535 (560)
Q Consensus 492 l~~~~l~y~~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (560)
-+++|.+|+++|.|- +-|++|.- |=++-++|.|..+..+++|
T Consensus 229 gf~~ga~~wk~k~~~~~~~~e~iq~~--~e~ne~smlq~~~~e~~~v 273 (273)
T 1scf_A 229 GFAFGALYWKKRQPSLTRAVENIQIN--EEDNEISMLQEKEREFQEV 273 (273)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHhhcccCCccchhhhhcccc--cchhHHHHHHHhhhhhccC
Confidence 356799998888753 33444444 3467788888887777664
No 22
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=23.98 E-value=3.9e+02 Score=23.87 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhc--ChhHHHHHHHHH
Q 008601 325 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ-HLR--GNVARTLLEGIR 401 (560)
Q Consensus 325 ~le~ie~~ldeLE~~v~~~~~~ed~~ll~~~~l~~I~~LRr~li~Lrr~L~~~revl~~L~~-~l~--~~~~~~~L~dI~ 401 (560)
.++.++.+++.||.-++..+. ....+-.+.+++...--.+ -.++..|-. .+. ....+..-..+.
T Consensus 36 ~l~~l~~el~~iekGFL~k~l----------~~ea~~kl~Krik~~~E~~---Mk~LE~LDs~~ip~~~~~~R~kRK~lV 102 (135)
T 1i6z_A 36 HLQELNKELSGIQQGFLAKEL----------QAEALCKLDRKVKATIEQF---MKILEEIDTMVLPEQFKDSRLKRKNLV 102 (135)
T ss_dssp HHHHHHHHHHHHHTSSSCHHH----------HHHHHHHHHHHHHHHHHHH---HHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhh----------hhhHHHHHHHHHHHHHHHH---HHHHHHhccccCCccHHHHHHHHHHHH
Confidence 456677777777776666431 2345566666555441111 111222221 121 224455555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008601 402 KNAREMIEEQEAVRGRLFTIQDV 424 (560)
Q Consensus 402 d~~~rlle~lealre~l~~L~D~ 424 (560)
+.+...+..+|.++.++..-.+.
T Consensus 103 ~~iQ~~L~~~D~l~~~~~~~~~~ 125 (135)
T 1i6z_A 103 KKVQVFLAECDTVEQYICQETER 125 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555544443
No 23
>2qij_C Core antigen; viral capsid protein, icosahedral virus; 8.90A {Hepatitis b virus subtype adyw}
Probab=20.73 E-value=22 Score=32.03 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=11.4
Q ss_pred HHHHHhhcccCCCCCCCCCCCCchHH
Q 008601 454 LTVITGLFGINVDGIPGADNTPYAFG 479 (560)
Q Consensus 454 LTfIaGiyGMNF~~MPel~~~pyGy~ 479 (560)
+|.||++|||+.+-.+|.. .++-+.
T Consensus 1 ~~~~~WLWGMDIDPYKEFg-AsvELL 25 (157)
T 2qij_C 1 MTMITDSLEFHIDPYKEFG-ATVELL 25 (157)
T ss_dssp ---------CCCCTTGGGT-CCHHHH
T ss_pred CceeeeecccccCcccccc-chHHHH
Confidence 4789999999998888777 555443
Done!