Your job contains 1 sequence.
>008602
MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE
PTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPL
LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS
NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR
KNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG
ANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPG
NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFM
NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA
ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE
FTEGRLVIGKEEEKTLEAVR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008602
(560 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010306 - symbol:EMB1586 "embryo defective 158... 1622 9.7e-167 1
TIGR_CMR|BA_2109 - symbol:BA_2109 "ATP-dependent RNA heli... 271 1.8e-42 3
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 251 7.4e-38 3
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 245 7.8e-35 3
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 244 1.2e-34 3
UNIPROTKB|Q71YU6 - symbol:LMOf2365_1746 "Helicase domain ... 253 6.9e-33 2
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 231 1.2e-32 3
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 231 1.3e-32 3
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 231 1.3e-32 3
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 231 1.3e-32 3
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 231 1.3e-32 3
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 231 1.3e-32 3
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 231 1.4e-32 3
UNIPROTKB|E7EQG2 - symbol:EIF4A2 "Eukaryotic initiation f... 203 3.4e-32 3
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas... 209 4.1e-32 3
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 267 9.3e-32 2
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 267 9.3e-32 2
TIGR_CMR|BA_4509 - symbol:BA_4509 "ATP-dependent RNA heli... 239 1.2e-31 2
UNIPROTKB|Q3SZ65 - symbol:EIF4A2 "Eukaryotic initiation f... 202 1.6e-31 3
UNIPROTKB|E2R3J1 - symbol:EIF4A2 "Uncharacterized protein... 202 1.6e-31 3
UNIPROTKB|Q14240 - symbol:EIF4A2 "Eukaryotic initiation f... 202 1.6e-31 3
UNIPROTKB|A6M930 - symbol:EIF4A2 "Eukaryotic translation ... 202 1.6e-31 3
MGI|MGI:106906 - symbol:Eif4a2 "eukaryotic translation in... 202 1.6e-31 3
RGD|1309225 - symbol:Eif4a2 "eukaryotic translation initi... 202 1.6e-31 3
UNIPROTKB|F8WFX2 - symbol:Eif4a2 "Eukaryotic initiation f... 202 1.6e-31 3
UNIPROTKB|Q8JFP1 - symbol:EIF4A2 "Eukaryotic initiation f... 202 2.0e-31 3
UNIPROTKB|Q3SZ54 - symbol:EIF4A1 "Eukaryotic initiation f... 199 2.3e-31 3
UNIPROTKB|F1P895 - symbol:EIF4A1 "Uncharacterized protein... 199 2.3e-31 3
UNIPROTKB|J9NY67 - symbol:EIF4A1 "Uncharacterized protein... 199 2.3e-31 3
UNIPROTKB|P60842 - symbol:EIF4A1 "Eukaryotic initiation f... 199 2.3e-31 3
UNIPROTKB|A6M928 - symbol:EIF4A1 "Uncharacterized protein... 199 2.3e-31 3
MGI|MGI:95303 - symbol:Eif4a1 "eukaryotic translation ini... 199 2.3e-31 3
UNIPROTKB|Q6P3V8 - symbol:Eif4a1 "Protein Eif4a1" species... 199 2.3e-31 3
ZFIN|ZDB-GENE-031030-2 - symbol:eif4a1a "eukaryotic trans... 206 2.6e-31 3
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 233 4.6e-31 2
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 233 4.6e-31 2
UNIPROTKB|Q4K4K3 - symbol:dbpA "ATP-independent RNA helic... 220 5.2e-31 3
ZFIN|ZDB-GENE-040426-2802 - symbol:eif4a2 "eukaryotic tra... 201 5.9e-31 3
ZFIN|ZDB-GENE-040120-6 - symbol:eif4a1b "eukaryotic trans... 202 1.0e-30 3
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 198 1.0e-30 3
UNIPROTKB|I3LLD5 - symbol:I3LLD5 "Uncharacterized protein... 197 1.2e-30 3
UNIPROTKB|J9NU36 - symbol:EIF4A1 "Uncharacterized protein... 199 2.2e-30 3
UNIPROTKB|P54475 - symbol:cshB "DEAD-box ATP-dependent RN... 254 3.1e-30 2
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 235 4.0e-30 2
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 235 4.0e-30 2
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd... 248 9.6e-30 2
CGD|CAL0001638 - symbol:FAL1 species:5476 "Candida albica... 205 1.1e-29 3
UNIPROTKB|Q9KNA4 - symbol:VC_A0061 "ATP-dependent RNA hel... 235 1.8e-29 2
TIGR_CMR|VC_A0061 - symbol:VC_A0061 "ATP-dependent RNA he... 235 1.8e-29 2
CGD|CAL0004095 - symbol:TIF species:5476 "Candida albican... 201 2.0e-29 3
UNIPROTKB|P87206 - symbol:TIF1 "ATP-dependent RNA helicas... 201 2.0e-29 3
UNIPROTKB|Q9KLE2 - symbol:VC_A0804 "ATP-dependent RNA hel... 242 2.3e-29 2
TIGR_CMR|VC_A0804 - symbol:VC_A0804 "ATP-dependent RNA he... 242 2.3e-29 2
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 242 2.7e-29 2
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 242 2.7e-29 2
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 263 4.5e-29 2
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 263 4.5e-29 2
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 262 4.7e-29 2
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 264 4.9e-29 2
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 264 4.9e-29 2
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 264 4.9e-29 2
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 264 4.9e-29 2
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 214 5.2e-29 3
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 262 7.5e-29 2
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 262 7.5e-29 2
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 262 7.5e-29 2
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 198 9.0e-29 3
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 198 9.0e-29 3
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 258 9.2e-29 2
UNIPROTKB|O05855 - symbol:rhlE "PROBABLE ATP-DEPENDENT RN... 203 9.2e-29 3
UNIPROTKB|I3LDV0 - symbol:DDX3Y "Uncharacterized protein"... 264 9.5e-29 2
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot... 256 9.7e-29 2
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati... 256 9.7e-29 2
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 261 9.9e-29 2
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 261 9.9e-29 2
ASPGD|ASPL0000051195 - symbol:AN1634 species:162425 "Emer... 266 1.0e-28 2
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 257 1.2e-28 2
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 265 1.4e-28 2
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 262 1.5e-28 2
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 261 1.6e-28 2
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 261 1.6e-28 2
UNIPROTKB|Q11039 - symbol:deaD "Cold-shock DEAD box prote... 205 1.7e-28 3
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 258 2.0e-28 2
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 208 2.0e-28 3
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 265 2.6e-28 2
WB|WBGene00022029 - symbol:Y65B4A.6 species:6239 "Caenorh... 197 3.4e-28 3
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 196 3.9e-28 3
WB|WBGene00018007 - symbol:F33D11.10 species:6239 "Caenor... 196 4.6e-28 3
POMBASE|SPAC1006.07 - symbol:SPAC1006.07 "translation ini... 189 5.3e-28 3
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 197 6.6e-28 3
UNIPROTKB|P21693 - symbol:dbpA species:83333 "Escherichia... 195 6.8e-28 2
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac... 187 9.4e-28 3
ASPGD|ASPL0000069536 - symbol:AN7424 species:162425 "Emer... 235 1.1e-27 2
CGD|CAL0004058 - symbol:DBP8 species:5476 "Candida albica... 214 1.1e-27 2
RGD|2314437 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box po... 257 1.1e-27 2
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 257 1.3e-27 2
POMBASE|SPBC24C6.02 - symbol:SPBC24C6.02 "ATP-dependent R... 257 1.3e-27 2
TIGR_CMR|VC_2564 - symbol:VC_2564 "ATP-dependent RNA heli... 202 1.4e-27 3
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 208 1.5e-27 2
POMBASE|SPAC1F5.10 - symbol:SPAC1F5.10 "ATP-dependent RNA... 193 1.5e-27 3
WARNING: Descriptions of 755 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 1622 (576.0 bits), Expect = 9.7e-167, P = 9.7e-167
Identities = 330/556 (59%), Positives = 400/556 (71%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
M A STR L+L+ + K S H RFL V + G LTLASL ++
Sbjct: 1 MAASTSTRFLVLLKDFSAFRKISWTCAATNFHRQSRFLCHVAKEDGSLTLASLDLGNKPR 60
Query: 61 PTXXXXXXXXXXXXXIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFXXXXXXXX 120
E+ + KV+AV++D +K KK EI S F+A SF
Sbjct: 61 KFGKGKAMKLEGSFVTEMGQGKVRAVKNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDS 120
Query: 121 XXXXXXXXXFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180
F+VPT+VQSAA+P+I+K HD VIQSYTGSGKTLAYLLPILS++GPL +KS
Sbjct: 121 LLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSR 180
Query: 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR 240
+ + E+ K+T+I+A+IVAPSRELGMQIVRE++KLLGP ++ VQQLVGGANR RQEEAL+
Sbjct: 181 SSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALK 240
Query: 241 KNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300
KNKPAIVVGTPGRIAEIS GKLHTHGCRFLVLDE+DELLSFNFRE +HRI+EHVG+RSG
Sbjct: 241 KNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSG 300
Query: 301 ANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXX 360
A P K + RA RQTI+VSATVPFSVIRAA+SW H+P+LVQA V PL+++ +
Sbjct: 301 AGP---KGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPV 357
Query: 361 XXXXXXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
Q + QSLPPALKHYYC++K QHKVDTLRRCVHALDAQ+VIAFM
Sbjct: 358 MSLTPTTSEADG---QIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQSVIAFM 414
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
N++RQLKD V+KLEARGM +AE+HGDLGKL RST LKKFKNGE++VLVTNELSARGLDVA
Sbjct: 415 NHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVA 474
Query: 481 ECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACE 540
ECDLVVNL+LPTD++HYAHRA VV++CEE +VF+VKKM+KQL +P CE
Sbjct: 475 ECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFLYCE 534
Query: 541 FTEGRLVIGKEEEKTL 556
F +G LV+ EE+K +
Sbjct: 535 FVDGELVV-TEEDKAI 549
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 271 (100.5 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 64/168 (38%), Positives = 98/168 (58%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F TE+Q AIP+IL+ DV+ +S TG+GKTLAYLLP+L K+ P K+
Sbjct: 18 FKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINP-----------EVKQ 66
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ V++AP+REL MQI E++K ++ L+GGA+ RQ E L+K+ P ++VG
Sbjct: 67 PQV--VVLAPTRELVMQIHEEVQKFTAGTEISGAS-LIGGADIKRQVEKLKKH-PRVIVG 122
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGR 297
+PGRI E+ KL H + +V DE D+++ A+ +++ R
Sbjct: 123 SPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMR 170
Score = 216 (81.1 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 48/160 (30%), Positives = 85/160 (53%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
++H Y + + + K D +RR +H D + V AF+N+ +L + KL+ R MKAA LH +
Sbjct: 210 VEHTYIICERREKNDYVRRIMHMGDVKAV-AFLNDPFRLDEITEKLKFRKMKAAALHAEA 268
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
K R T++ F+ G++ +L+ +++ARG+D+ + V++L+LP Y HR+
Sbjct: 269 SKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRM 328
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLV 547
VVS+ E + + K+L + E +G V
Sbjct: 329 GKEGTVVSLVTPQEERKLLQFAKKLGIVFTKQEMFKGSFV 368
Score = 44 (20.5 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
MR +RQ + SAT+ + AAR +P LV+
Sbjct: 169 MR-DRQLVFFSATMTKAAEDAARDLAVEPQLVR 200
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 251 (93.4 bits), Expect = 7.4e-38, Sum P(3) = 7.4e-38
Identities = 62/166 (37%), Positives = 94/166 (56%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L+N DV+ Q+ TG+GKT A+ +PI+ KV K
Sbjct: 22 FEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNV-------------KN 68
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ ++A++VAP+REL +Q+ E+ K+ G + V + GG + RQ AL+K+ P ++VG
Sbjct: 69 SAVQALVVAPTRELAIQVSEELYKI-GAVKRVRVLPIYGGQDIERQIRALKKH-PHVIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGRI + G L +VLDE DE+L+ F E + I+ HV
Sbjct: 127 TPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHV 172
Score = 190 (71.9 bits), Expect = 7.4e-38, Sum P(3) = 7.4e-38
Identities = 40/122 (32%), Positives = 62/122 (50%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
+A + P ++ YY + K D L R + + I F R++ + L RG
Sbjct: 206 KAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGY 265
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A +HGDL + R + L+KFK G + +LV +++ARGLD++ V N D+P D Y
Sbjct: 266 AAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYV 325
Query: 499 HR 500
HR
Sbjct: 326 HR 327
Score = 70 (29.7 bits), Expect = 7.4e-38, Sum P(3) = 7.4e-38
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
AERQT++ SAT+P + R A + ++P LV+ K
Sbjct: 174 AERQTLLFSATMPDPIRRIAERFMNEPELVKVK 206
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 245 (91.3 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 63/167 (37%), Positives = 97/167 (58%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L N DV+ Q+ TG+GKT A+ +P++ K+ P +S N
Sbjct: 23 FEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINP---ESPN-------- 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA-VQQLVGGANRSRQEEALRKNKPAIVV 248
I+A+++AP+REL +Q+ E+ K+ G DK+A V + GG + RQ AL+KN P I+V
Sbjct: 72 --IQAIVIAPTRELAIQVSEELYKI-G-QDKRARVLPIYGGQDIGRQIRALKKN-PHIIV 126
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GTPGR+ + + +VLDE DE+L+ F E + I+ +V
Sbjct: 127 GTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNV 173
Score = 185 (70.2 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 39/113 (34%), Positives = 58/113 (51%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
++ +Y + K DTL R + + I F R++ + L RG A +HGDL
Sbjct: 216 IQQFYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDL 275
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R L+KFK G + VLV +++ARGLD++ V N D+P D Y HR
Sbjct: 276 TQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHR 328
Score = 55 (24.4 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
AE QT++ SAT+P + R A + +P V+ K
Sbjct: 175 AEHQTLLFSATMPAPIKRIAERFMTNPEHVKVK 207
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 244 (91.0 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 61/167 (36%), Positives = 98/167 (58%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L N DV+ Q+ TG+GKT A+ +P++ K+ P +S N
Sbjct: 23 FEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINP---ESPN-------- 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA-VQQLVGGANRSRQEEALRKNKPAIVV 248
I+A+++AP+REL +Q+ E+ K+ G DK+A V + GG + RQ AL+KN P I+V
Sbjct: 72 --IQAIVIAPTRELAIQVSEELYKI-G-QDKRAKVLPIYGGQDIGRQIRALKKN-PNIIV 126
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GTPGR+ + + + +V+DE DE+L+ F + + I+ +V
Sbjct: 127 GTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNV 173
Score = 187 (70.9 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 39/113 (34%), Positives = 59/113 (52%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
++ +Y + + K DTL R + + I F R++ + L RG A +HGDL
Sbjct: 216 IQQFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDL 275
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R L+KFK G + VLV +++ARGLD++ V N D+P D Y HR
Sbjct: 276 TQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHR 328
Score = 53 (23.7 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+E QT++ SAT+P + R A + +P V+ K
Sbjct: 175 SEHQTLLFSATMPAPIKRIAERFMTEPEHVKVK 207
>UNIPROTKB|Q71YU6 [details] [associations]
symbol:LMOf2365_1746 "Helicase domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017262
GenomeReviews:AE017262_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:YP_014341.1 ProteinModelPortal:Q71YU6
STRING:Q71YU6 GeneID:2799880 KEGG:lmf:LMOf2365_1746 PATRIC:20324779
HOGENOM:HOG000268811 OMA:MTIATPF ProtClustDB:CLSK564571
Uniprot:Q71YU6
Length = 442
Score = 253 (94.1 bits), Expect = 6.9e-33, Sum P(2) = 6.9e-33
Identities = 70/169 (41%), Positives = 94/169 (55%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PTE+QSA I DV+ S TG+GKT+AY LP L K+ E+ K
Sbjct: 19 YETPTEIQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKI------------EAIPK 66
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T + +++APS EL MQI I+ L PSD+ V L+GGAN RQ E L+K KP I+V
Sbjct: 67 T--QWLVLAPSHELVMQITEVIRSWL-PSDELTVISLIGGANVKRQIEKLKK-KPQIIVA 122
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELL-SFNFREAMHRIVEHVGR 297
+PGR E+ K+ H + + LDE D+LL NF+ + IVE R
Sbjct: 123 SPGRALELIKQKKIKMHEIKTITLDECDQLLRQENFKSTLE-IVESAVR 170
Score = 172 (65.6 bits), Expect = 6.9e-33, Sum P(2) = 6.9e-33
Identities = 42/169 (24%), Positives = 80/169 (47%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
++H Y + + K LRR H D + ++ F+ + +++ + KL +KAA +HG++
Sbjct: 211 VEHLYMDVESRDKATLLRRISHIKDMRGLV-FVKDKPRMEILLEKLHYDKVKAAGIHGEI 269
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
K R L FK G + L+ +++ARGLD+ + V++ DL Y HR+
Sbjct: 270 RKEKRKKYLDDFKKGTLTYLIVTDVAARGLDIEDLPYVIHYDLAASEKEYTHRSGRTGRM 329
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEKTL 556
V++ E+ +K+ + + F +G+L+ G E +
Sbjct: 330 GKSGTVITFANPREIRTLKQYLTIHNLKGKQVRFYQGKLLDGAVPENKI 378
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 231 (86.4 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L+ D++ Q+ TG+GKT A+ LP+L KV K+
Sbjct: 22 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKES----------- 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++ +++AP+REL +Q+ E+ K+ G + + + GG + +RQ AL+K+ P I+VG
Sbjct: 71 --VQGIVIAPTRELAIQVGEELYKI-GKHKRVRILPIYGGQDINRQIRALKKH-PHIIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGRI + L +VLDE DE+L+ F E + I+ V
Sbjct: 127 TPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Score = 189 (71.6 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
+A + P ++ +Y + + K D L R + + I F R++ + L RG
Sbjct: 206 KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGY 265
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A +HGDL + R + L+KFK G + VLV +++ARGLD++ V N D+P D Y
Sbjct: 266 AAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYV 325
Query: 499 HR 500
HR
Sbjct: 326 HR 327
Score = 49 (22.3 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDP--LLVQAKNV 348
QT++ SAT+P + R A + +P + V+AK V
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEV 210
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 231 (86.4 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L+ D++ Q+ TG+GKT A+ LP+L KV K+
Sbjct: 22 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKES----------- 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++ +++AP+REL +Q+ E+ K+ G + + + GG + +RQ AL+K+ P I+VG
Sbjct: 71 --VQGIVIAPTRELAIQVGEELYKI-GKHKRVRILPIYGGQDINRQIRALKKH-PHIIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGRI + L +VLDE DE+L+ F E + I+ V
Sbjct: 127 TPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Score = 189 (71.6 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
+A + P ++ +Y + + K D L R + + I F R++ + L RG
Sbjct: 206 KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGY 265
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A +HGDL + R + L+KFK G + VLV +++ARGLD++ V N D+P D Y
Sbjct: 266 AAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYV 325
Query: 499 HR 500
HR
Sbjct: 326 HR 327
Score = 49 (22.3 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDP--LLVQAKNV 348
QT++ SAT+P + R A + +P + V+AK V
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEV 210
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 231 (86.4 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L+ D++ Q+ TG+GKT A+ LP+L KV K+
Sbjct: 22 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKES----------- 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++ +++AP+REL +Q+ E+ K+ G + + + GG + +RQ AL+K+ P I+VG
Sbjct: 71 --VQGIVIAPTRELAIQVGEELYKI-GKHKRVRILPIYGGQDINRQIRALKKH-PHIIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGRI + L +VLDE DE+L+ F E + I+ V
Sbjct: 127 TPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Score = 189 (71.6 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
+A + P ++ +Y + + K D L R + + I F R++ + L RG
Sbjct: 206 KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGY 265
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A +HGDL + R + L+KFK G + VLV +++ARGLD++ V N D+P D Y
Sbjct: 266 AAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYV 325
Query: 499 HR 500
HR
Sbjct: 326 HR 327
Score = 49 (22.3 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDP--LLVQAKNV 348
QT++ SAT+P + R A + +P + V+AK V
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEV 210
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 231 (86.4 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L+ D++ Q+ TG+GKT A+ LP+L KV K+
Sbjct: 22 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKES----------- 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++ +++AP+REL +Q+ E+ K+ G + + + GG + +RQ AL+K+ P I+VG
Sbjct: 71 --VQGIVIAPTRELAIQVGEELYKI-GKHKRVRILPIYGGQDINRQIRALKKH-PHIIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGRI + L +VLDE DE+L+ F E + I+ V
Sbjct: 127 TPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Score = 189 (71.6 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
+A + P ++ +Y + + K D L R + + I F R++ + L RG
Sbjct: 206 KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGY 265
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A +HGDL + R + L+KFK G + VLV +++ARGLD++ V N D+P D Y
Sbjct: 266 AAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYV 325
Query: 499 HR 500
HR
Sbjct: 326 HR 327
Score = 49 (22.3 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDP--LLVQAKNV 348
QT++ SAT+P + R A + +P + V+AK V
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEV 210
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 231 (86.4 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L+ D++ Q+ TG+GKT A+ LP+L KV K+
Sbjct: 22 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKES----------- 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++ +++AP+REL +Q+ E+ K+ G + + + GG + +RQ AL+K+ P I+VG
Sbjct: 71 --VQGIVIAPTRELAIQVGEELYKI-GKHKRVRILPIYGGQDINRQIRALKKH-PHIIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGRI + L +VLDE DE+L+ F E + I+ V
Sbjct: 127 TPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Score = 189 (71.6 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
+A + P ++ +Y + + K D L R + + I F R++ + L RG
Sbjct: 206 KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGY 265
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A +HGDL + R + L+KFK G + VLV +++ARGLD++ V N D+P D Y
Sbjct: 266 AAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYV 325
Query: 499 HR 500
HR
Sbjct: 326 HR 327
Score = 49 (22.3 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDP--LLVQAKNV 348
QT++ SAT+P + R A + +P + V+AK V
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEV 210
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 231 (86.4 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L+ D++ Q+ TG+GKT A+ LP+L KV K+
Sbjct: 22 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKES----------- 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++ +++AP+REL +Q+ E+ K+ G + + + GG + +RQ AL+K+ P I+VG
Sbjct: 71 --VQGIVIAPTRELAIQVGEELYKI-GKHKRVRILPIYGGQDINRQIRALKKH-PHIIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGRI + L +VLDE DE+L+ F E + I+ V
Sbjct: 127 TPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Score = 189 (71.6 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
+A + P ++ +Y + + K D L R + + I F R++ + L RG
Sbjct: 206 KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGY 265
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A +HGDL + R + L+KFK G + VLV +++ARGLD++ V N D+P D Y
Sbjct: 266 AAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYV 325
Query: 499 HR 500
HR
Sbjct: 326 HR 327
Score = 49 (22.3 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDP--LLVQAKNV 348
QT++ SAT+P + R A + +P + V+AK V
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEV 210
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 231 (86.4 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 57/166 (34%), Positives = 91/166 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T +Q+ IP L+ D++ Q+ TG+GKT A+ LP+L KV K+
Sbjct: 22 FEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKES----------- 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++ +++AP+REL +Q+ E+ K+ G + + + GG + +RQ AL+K+ P I+VG
Sbjct: 71 --VQGIVIAPTRELAIQVGEELYKI-GKHKRVRILPIYGGQDINRQIRALKKH-PHIIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGRI + L +VLDE DE+L+ F E + I+ V
Sbjct: 127 TPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDV 172
Score = 189 (71.6 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
+A + P ++ +Y + + K D L R + + I F R++ + L RG
Sbjct: 206 KAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGY 265
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A +HGDL + R + L+KFK G + VLV +++ARGLD++ V N D+P D Y
Sbjct: 266 AAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYV 325
Query: 499 HR 500
HR
Sbjct: 326 HR 327
Score = 49 (22.3 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDP--LLVQAKNV 348
QT++ SAT+P + R A + +P + V+AK V
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEV 210
>UNIPROTKB|E7EQG2 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2
IPI:IPI00924536 ProteinModelPortal:E7EQG2 SMR:E7EQG2 PRIDE:E7EQG2
Ensembl:ENST00000425053 ArrayExpress:E7EQG2 Bgee:E7EQG2
Uniprot:E7EQG2
Length = 362
Score = 203 (76.5 bits), Expect = 3.4e-32, Sum P(3) = 3.4e-32
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 247 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR+
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRS 361
Score = 197 (74.4 bits), Expect = 3.4e-32, Sum P(3) = 3.4e-32
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K +
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEFKET--------- 102
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 103 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 159 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 56 (24.8 bits), Expect = 3.4e-32, Sum P(3) = 3.4e-32
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 247
Score = 39 (18.8 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 226 KKFMRDPIRILVKKEELTLEGI 247
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 209 (78.6 bits), Expect = 4.1e-32, Sum P(3) = 4.1e-32
Identities = 53/164 (32%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI ++K HDV+ Q+ +G+GKT + + +L K+ ++ K
Sbjct: 43 FERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKI------------DTNVK 90
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+I+AP+REL QI +++ +G +GG + +AL+ P +VVG
Sbjct: 91 -QCQALILAPTRELAQQI-QKVVVAIGDFMNIECHACIGGTSVRDDMKALQDG-PQVVVG 147
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L T G + VLDE DE+LS F E ++ I +
Sbjct: 148 TPGRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQ 191
Score = 197 (74.4 bits), Expect = 4.1e-32, Sum P(3) = 4.1e-32
Identities = 43/158 (27%), Positives = 79/158 (50%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K +Y V K + K+DTL + + F N R++ KL AR
Sbjct: 229 DELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFT 288
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R +K+F++G RVL+ +L ARG+DV + LV+N DLP + +Y H
Sbjct: 289 VSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIH 348
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
R ++ +V +++++++ + I+
Sbjct: 349 RIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIE 386
Score = 52 (23.4 bits), Expect = 4.1e-32, Sum P(3) = 4.1e-32
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + DP+ ++ K+ + LE +
Sbjct: 198 QVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGI 236
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 267 (99.0 bits), Expect = 9.3e-32, Sum P(2) = 9.3e-32
Identities = 58/162 (35%), Positives = 95/162 (58%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
FN PT++Q AIP+ + HD++ S TGSGKTLA+++P L ++ K+++ + K
Sbjct: 21 FNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLS--KNRALS-------K 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
D VI+ P+REL Q+ +++ + KAV ++GG N + Q + L+K +P +V
Sbjct: 72 RDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVL-ILGGENFNDQVKVLQK-EPEFIVA 129
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+A+ G H +G L+LDE D +L F + + +I
Sbjct: 130 TPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI 171
Score = 145 (56.1 bits), Expect = 9.3e-32, Sum P(2) = 9.3e-32
Identities = 40/156 (25%), Positives = 71/156 (45%)
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKL-EARGMKAAELHGDL 447
K +Y L K L+ + +Q +I F TR D + KL + + A L G+L
Sbjct: 222 KRFYLADNLTQKEALLQHFLVTEKSQQIIIF-TATRSDTDRLAKLLTEQNLNAVALSGEL 280
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
+ R+ ++ F G+ ++LVT +L++RGLD+ V+N D+P + + HR
Sbjct: 281 NQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRA 340
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTE 543
+S+ + +K ++ L Q FT+
Sbjct: 341 GTKGDAISLVGPNDWLSLKNVEAFLQ---QKISFTK 373
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 267 (99.0 bits), Expect = 9.3e-32, Sum P(2) = 9.3e-32
Identities = 58/162 (35%), Positives = 95/162 (58%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
FN PT++Q AIP+ + HD++ S TGSGKTLA+++P L ++ K+++ + K
Sbjct: 21 FNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLS--KNRALS-------K 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
D VI+ P+REL Q+ +++ + KAV ++GG N + Q + L+K +P +V
Sbjct: 72 RDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVL-ILGGENFNDQVKVLQK-EPEFIVA 129
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+A+ G H +G L+LDE D +L F + + +I
Sbjct: 130 TPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI 171
Score = 145 (56.1 bits), Expect = 9.3e-32, Sum P(2) = 9.3e-32
Identities = 40/156 (25%), Positives = 71/156 (45%)
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKL-EARGMKAAELHGDL 447
K +Y L K L+ + +Q +I F TR D + KL + + A L G+L
Sbjct: 222 KRFYLADNLTQKEALLQHFLVTEKSQQIIIF-TATRSDTDRLAKLLTEQNLNAVALSGEL 280
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
+ R+ ++ F G+ ++LVT +L++RGLD+ V+N D+P + + HR
Sbjct: 281 NQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRA 340
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTE 543
+S+ + +K ++ L Q FT+
Sbjct: 341 GTKGDAISLVGPNDWLSLKNVEAFLQ---QKISFTK 373
>TIGR_CMR|BA_4509 [details] [associations]
symbol:BA_4509 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268806 OMA:YAHVEPK HSSP:P10081
RefSeq:NP_846734.1 RefSeq:YP_021153.1 RefSeq:YP_030436.1
ProteinModelPortal:Q81LV0 SMR:Q81LV0
EnsemblBacteria:EBBACT00000013143 EnsemblBacteria:EBBACT00000016547
EnsemblBacteria:EBBACT00000022918 GeneID:1088235 GeneID:2818505
GeneID:2850064 KEGG:ban:BA_4509 KEGG:bar:GBAA_4509 KEGG:bat:BAS4187
ProtClustDB:CLSK887589 BioCyc:BANT260799:GJAJ-4244-MONOMER
BioCyc:BANT261594:GJ7F-4386-MONOMER Uniprot:Q81LV0
Length = 436
Score = 239 (89.2 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 62/165 (37%), Positives = 89/165 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q P + K V+ QS TGSGKT AYLLP L+++ P G++
Sbjct: 24 FTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINP------------GRE 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLG--PSDKKAVQQ-LVGGANRSRQEEALRKNKPAI 246
+++ VI AP+REL QI EI KL D+ + L+GG ++ R E L+K +P I
Sbjct: 72 -EVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKK-QPHI 129
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
VVGTPGRI ++ L H +++DE D +L F + +I
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKI 174
Score = 176 (67.0 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 38/145 (26%), Positives = 72/145 (49%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGD 446
++HY +K ++K+D + + + + F NT+++ D V L RG+K +HGD
Sbjct: 221 IEHYLVPSKHRNKIDLVNKMLLQFKPYLAVVF-TNTKKMADQVADGLMERGLKVGRIHGD 279
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXX 506
L R +K+ ++ E + +V +L+ARG+D+ V+N +LP+D + HR
Sbjct: 280 LSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTAR 339
Query: 507 XXXXXXVVSICEEPEVFVVKKMQKQ 531
V+I + + ++KQ
Sbjct: 340 AGHSGIAVTIYDPANEEALDSLEKQ 364
Score = 38 (18.4 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 32/141 (22%), Positives = 54/141 (38%)
Query: 189 KTDIEAVIVAPSRELGMQIVREIKKLLG-PSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ +++ VI AP+REL QI EI KL ++ + + +Q + K +
Sbjct: 70 REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR--SGANPRE 305
V + G++ D ++E F +A IV+ G
Sbjct: 130 V--------VGTPGRIK---------DLVEEQALF-VHKANTIIVDEADLMLDMGFIHDV 171
Query: 306 PKSALAMRAERQTIMVSATVP 326
K A M Q ++ SAT+P
Sbjct: 172 DKIAARMPKNLQMLVFSATIP 192
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 202 (76.2 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 247 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 360
Score = 197 (74.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K +
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEFKET--------- 102
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 103 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 159 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 56 (24.8 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 247
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 226 KKFMRDPIRILVKKEELTLEGI 247
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 202 (76.2 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 247 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 360
Score = 197 (74.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K +
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEFKET--------- 102
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 103 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 159 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 56 (24.8 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 247
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 226 KKFMRDPIRILVKKEELTLEGI 247
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 202 (76.2 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 247 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 360
Score = 197 (74.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K +
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEFKET--------- 102
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 103 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 159 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 56 (24.8 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 247
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 226 KKFMRDPIRILVKKEELTLEGI 247
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 202 (76.2 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 247 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 360
Score = 197 (74.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K +
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEFKET--------- 102
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 103 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 159 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 56 (24.8 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 247
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 226 KKFMRDPIRILVKKEELTLEGI 247
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 202 (76.2 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 247 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 360
Score = 197 (74.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K +
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEFKET--------- 102
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 103 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 159 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 56 (24.8 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 247
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 226 KKFMRDPIRILVKKEELTLEGI 247
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 202 (76.2 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 247 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 360
Score = 197 (74.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K +
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEFKET--------- 102
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 103 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 159 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 56 (24.8 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 247
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 226 KKFMRDPIRILVKKEELTLEGI 247
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 202 (76.2 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 248 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 307
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 308 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 361
Score = 197 (74.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 51/164 (31%), Positives = 86/164 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K +
Sbjct: 54 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEFKET--------- 103
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 104 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 159
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 160 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 203
Score = 56 (24.8 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 210 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 248
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 227 KKFMRDPIRILVKKEELTLEGI 248
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 202 (76.2 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 247 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 306
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 307 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 360
Score = 198 (74.8 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 52/164 (31%), Positives = 85/164 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ E K
Sbjct: 53 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL------------EIDLK 100
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 101 -ETQALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 158
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 159 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 54 (24.1 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + +P+ ++ K + LE +
Sbjct: 209 QVVLLSATMPMDVLEVTKKFMREPIRILVKKEELTLEGI 247
Score = 38 (18.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 226 KKFMREPIRILVKKEELTLEGI 247
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 199 (75.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V + + K+DTL L + F+N R++ K+ AR
Sbjct: 237 KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ +HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 297 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356
Query: 498 AHR 500
HR
Sbjct: 357 IHR 359
Score = 197 (74.4 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 50/164 (30%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 102 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 58 (25.5 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 246
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 225 KKFMRDPIRILVKKEELTLEGI 246
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 234 ILVKKEELTLEGIR 247
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 199 (75.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V + + K+DTL L + F+N R++ K+ AR
Sbjct: 237 KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ +HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 297 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356
Query: 498 AHR 500
HR
Sbjct: 357 IHR 359
Score = 197 (74.4 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 50/164 (30%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 102 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 58 (25.5 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 246
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 225 KKFMRDPIRILVKKEELTLEGI 246
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 234 ILVKKEELTLEGIR 247
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 199 (75.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V + + K+DTL L + F+N R++ K+ AR
Sbjct: 237 KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ +HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 297 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356
Query: 498 AHR 500
HR
Sbjct: 357 IHR 359
Score = 197 (74.4 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 50/164 (30%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 102 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 58 (25.5 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 246
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 225 KKFMRDPIRILVKKEELTLEGI 246
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 234 ILVKKEELTLEGIR 247
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 199 (75.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V + + K+DTL L + F+N R++ K+ AR
Sbjct: 237 KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ +HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 297 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356
Query: 498 AHR 500
HR
Sbjct: 357 IHR 359
Score = 197 (74.4 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 50/164 (30%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 102 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 58 (25.5 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 246
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 225 KKFMRDPIRILVKKEELTLEGI 246
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 234 ILVKKEELTLEGIR 247
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 199 (75.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V + + K+DTL L + F+N R++ K+ AR
Sbjct: 237 KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ +HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 297 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356
Query: 498 AHR 500
HR
Sbjct: 357 IHR 359
Score = 197 (74.4 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 50/164 (30%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 102 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 58 (25.5 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 246
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 225 KKFMRDPIRILVKKEELTLEGI 246
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 234 ILVKKEELTLEGIR 247
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 199 (75.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V + + K+DTL L + F+N R++ K+ AR
Sbjct: 237 KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ +HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 297 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356
Query: 498 AHR 500
HR
Sbjct: 357 IHR 359
Score = 197 (74.4 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 50/164 (30%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 102 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 58 (25.5 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 246
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 225 KKFMRDPIRILVKKEELTLEGI 246
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 234 ILVKKEELTLEGIR 247
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 199 (75.1 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V + + K+DTL L + F+N R++ K+ AR
Sbjct: 237 KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ +HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 297 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356
Query: 498 AHR 500
HR
Sbjct: 357 IHR 359
Score = 197 (74.4 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 50/164 (30%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 102 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 58 (25.5 bits), Expect = 2.3e-31, Sum P(3) = 2.3e-31
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 246
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 225 KKFMRDPIRILVKKEELTLEGI 246
Score = 38 (18.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 234 ILVKKEELTLEGIR 247
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 206 (77.6 bits), Expect = 2.6e-31, Sum P(3) = 2.6e-31
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V K + K+DTL L + F+N R++ K+ AR
Sbjct: 237 KKEELTLEGIRQFYINVEKEEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ LHGD+ + R +K+F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 297 FTVSALHGDMEQKERDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 356
Query: 498 AHR 500
HR
Sbjct: 357 IHR 359
Score = 192 (72.6 bits), Expect = 2.6e-31, Sum P(3) = 2.6e-31
Identities = 49/164 (29%), Positives = 87/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQID-VELKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG +GG N + L+ + P IVVG
Sbjct: 102 ---QAMVLAPTRELAQQI-QKVVLALGDYMGATCHACIGGTNVRNDVQKLQADVPHIVVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + LDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFALDEADEMLSRGFKDQIYEIFQ 201
Score = 54 (24.1 bits), Expect = 2.6e-31, Sum P(3) = 2.6e-31
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q I++SAT+P V+ + DP+ ++ K + LE +
Sbjct: 203 LATDTQVILLSATMPQEVLEVTTKFMRDPVRILVKKEELTLEGI 246
Score = 38 (18.4 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 234 ILVKKEELTLEGIR 247
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 233 (87.1 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
Identities = 60/169 (35%), Positives = 90/169 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F +PT +Q AIP IL+ H++V Q+ TG+GKT AYLLP+L ++ + GKK
Sbjct: 22 FEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRI------------QRGKK 69
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +IV P+REL +Q+ E+ KL G K + GG RQ LR+ ++VG
Sbjct: 70 AQV--LIVTPTRELALQVADEVAKL-GKYLKVRALAVYGGQAIERQIRGLRQGVE-VIVG 125
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
TPGRI + + ++LDE DE+L F + + I+ + R
Sbjct: 126 TPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNR 174
Score = 177 (67.4 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
Identities = 39/148 (26%), Positives = 76/148 (51%)
Query: 386 PALKHYYCVTKLQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELH 444
PA++ Y K++ L +++ L Q ++ F +++ + V +L RG A LH
Sbjct: 212 PAIRQVYYELPETEKIEGLVSILNSELPIQAIV-FCRTKKRVDEVVEQLNFRGYAAKGLH 270
Query: 445 GDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXX 504
GD+ + R+ T+K FK G+ +LV +++ARGLD+ + V+N D+P + Y HR
Sbjct: 271 GDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRT 330
Query: 505 XXXXXXXXVVSICEEPEVFVVKKMQKQL 532
+++ E ++K +++ +
Sbjct: 331 GRAGREGKAITLINYRERKLLKAIEEAI 358
Score = 37 (18.1 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 290 RIVEHVGRRS 299
RI++H+GR++
Sbjct: 129 RILDHIGRKT 138
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 233 (87.1 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
Identities = 60/169 (35%), Positives = 90/169 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F +PT +Q AIP IL+ H++V Q+ TG+GKT AYLLP+L ++ + GKK
Sbjct: 22 FEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRI------------QRGKK 69
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +IV P+REL +Q+ E+ KL G K + GG RQ LR+ ++VG
Sbjct: 70 AQV--LIVTPTRELALQVADEVAKL-GKYLKVRALAVYGGQAIERQIRGLRQGVE-VIVG 125
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
TPGRI + + ++LDE DE+L F + + I+ + R
Sbjct: 126 TPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNR 174
Score = 177 (67.4 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
Identities = 39/148 (26%), Positives = 76/148 (51%)
Query: 386 PALKHYYCVTKLQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELH 444
PA++ Y K++ L +++ L Q ++ F +++ + V +L RG A LH
Sbjct: 212 PAIRQVYYELPETEKIEGLVSILNSELPIQAIV-FCRTKKRVDEVVEQLNFRGYAAKGLH 270
Query: 445 GDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXX 504
GD+ + R+ T+K FK G+ +LV +++ARGLD+ + V+N D+P + Y HR
Sbjct: 271 GDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRT 330
Query: 505 XXXXXXXXVVSICEEPEVFVVKKMQKQL 532
+++ E ++K +++ +
Sbjct: 331 GRAGREGKAITLINYRERKLLKAIEEAI 358
Score = 37 (18.1 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 5/10 (50%), Positives = 10/10 (100%)
Query: 290 RIVEHVGRRS 299
RI++H+GR++
Sbjct: 129 RILDHIGRKT 138
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 220 (82.5 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 55/165 (33%), Positives = 88/165 (53%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
T +Q+ ++P ILK D++ Q+ TGSGKT A+ + +L+ + P + +
Sbjct: 30 TPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPINP-------------RYFGCQ 76
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
A+++ P+REL Q+ +E+++L D V L GG + Q +L ++ I+VGTPGR
Sbjct: 77 ALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASL-EHGAHIIVGTPGR 135
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
I + G L G LVLDE D +L F +A+ I+E R
Sbjct: 136 IQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSR 180
Score = 173 (66.0 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 39/148 (26%), Positives = 73/148 (49%)
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLG 448
+ +Y ++ + ++ + + +H + +AF +Q+++ V L A+G+ A LHGDL
Sbjct: 221 QRFYEISP-EERMSAVTKVLHHFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLE 279
Query: 449 KLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXX 508
+ R L F N VLV +++ARGLD+ D+V+N++L DS + HR
Sbjct: 280 QRDRDQVLAMFANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAG 339
Query: 509 XXXXVVSICEEPEVFVVKKMQKQLAVPI 536
VS+ E + +++ P+
Sbjct: 340 EKGIAVSLVAPSEAHRAQAIEQLQKAPL 367
Score = 58 (25.5 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RQT++ SAT P + + A + DP V+A+
Sbjct: 179 SRRQTLLFSATYPVGIKQLASKFMRDPQTVKAE 211
Score = 41 (19.5 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSAT 324
+ VG R+ LAM A R T ++ AT
Sbjct: 269 ISAVGLHGDLEQRDRDQVLAMFANRSTSVLVAT 301
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 201 (75.8 bits), Expect = 5.9e-31, Sum P(3) = 5.9e-31
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 251 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 310
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 311 MDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 364
Score = 201 (75.8 bits), Expect = 5.9e-31, Sum P(3) = 5.9e-31
Identities = 52/164 (31%), Positives = 87/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ E +K
Sbjct: 57 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL------------EIEQK 104
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +A+++AP+REL QI + I L G + +GG N + + L+ P IVVG
Sbjct: 105 -ETQALVLAPTRELAQQIQKVILAL-GDYMGASCHACIGGTNVRNEMQKLQAEAPHIVVG 162
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 163 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 206
Score = 48 (22.0 bits), Expect = 5.9e-31, Sum P(3) = 5.9e-31
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + +P+ ++ K + LE +
Sbjct: 213 QVVLLSATMPADVLEVTTKFMREPVRILVKKEELTLEGI 251
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 202 (76.2 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 43/123 (34%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V K + K+DTL L + F+N R++ K+ AR
Sbjct: 260 KKEELTLEGIRQFYINVEKEEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 319
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ LHGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 320 FTVSALHGDMDQKDRDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 379
Query: 498 AHR 500
HR
Sbjct: 380 IHR 382
Score = 201 (75.8 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 52/164 (31%), Positives = 85/164 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ D G
Sbjct: 75 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI----DIELKGT------ 124
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 125 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEVQKLQAEAPHIVVG 180
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + + VLDE DE+LS F++ ++ I +
Sbjct: 181 TPGRVYDMLNRKFLSSKYIKMFVLDEADEMLSRGFKDQIYEIFQ 224
Score = 46 (21.3 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + +P+ ++ K + LE +
Sbjct: 231 QVVLLSATMPAEVLDVTTKFMREPVRILVKKEELTLEGI 269
Score = 38 (18.4 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 257 ILVKKEELTLEGIR 270
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 198 (74.8 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 43/160 (26%), Positives = 80/160 (50%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V K + K+DTL + + F N R++ KL AR
Sbjct: 229 KKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARD 288
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ +HGD+ + R +K+F++G RVL+ +L ARG+DV + LV+N DLP + +Y
Sbjct: 289 FTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENY 348
Query: 498 AHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
HR ++ +V +++++++ + I+
Sbjct: 349 IHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIE 388
Score = 198 (74.8 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 56/164 (34%), Positives = 86/164 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K +DV+ Q+ +G+GKT + + L K+ P N ++
Sbjct: 45 FERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDP--------NVKA--- 93
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+IVAP+REL QI +++ +G +GG ALR+ P IVVG
Sbjct: 94 --CQALIVAPTRELAQQI-QKVVIAIGDFMNIQCHACIGGTAVRDDMNALREG-PQIVVG 149
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGRI ++ L T + +LDE DE+LS F E ++ I +
Sbjct: 150 TPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQ 193
Score = 51 (23.0 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + DP+ ++ K + LE +
Sbjct: 200 QVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGI 238
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 197 (74.4 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 50/164 (30%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 102 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 196 (74.1 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 39/114 (34%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
++ +Y V + + K+DTL L + F+N R++ K+ AR + +HGD
Sbjct: 241 IRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGD 300
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 301 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 354
Score = 54 (24.1 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
+ + Q +++SAT+P V+ + + DP+ +
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI 234
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 199 (75.1 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V + + K+DTL L + F+N R++ K+ AR
Sbjct: 254 KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 313
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ +HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y
Sbjct: 314 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 373
Query: 498 AHR 500
HR
Sbjct: 374 IHR 376
Score = 189 (71.6 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 50/162 (30%), Positives = 87/162 (53%)
Query: 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD 191
+P Q A +P I K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 72 IPPTRQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT----------- 118
Query: 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VGTP
Sbjct: 119 -QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTP 176
Query: 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
GR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 177 GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 218
Score = 58 (25.5 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 220 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 263
Score = 39 (18.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 242 KKFMRDPIRILVKKEELTLEGI 263
Score = 38 (18.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 251 ILVKKEELTLEGIR 264
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 254 (94.5 bits), Expect = 3.1e-30, Sum P(2) = 3.1e-30
Identities = 63/171 (36%), Positives = 94/171 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT++Q IP++LK V+ QS TG+GKT AYLLP+L+K+ P KD
Sbjct: 24 FYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDV----------- 72
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ--LVGGANRSRQEEALRKNKPAIV 247
++ VI AP+REL QI +E K+ + ++ +GG ++ + + L K +P +V
Sbjct: 73 --VQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKL-KIQPHLV 129
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
VGTPGRIA++ L H LV+DE D +L F V+++G R
Sbjct: 130 VGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLAD----VDYIGSR 176
Score = 145 (56.1 bits), Expect = 3.1e-30, Sum P(2) = 3.1e-30
Identities = 40/168 (23%), Positives = 75/168 (44%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGD 446
++H +K + K L + L+ I F N T+ D + + L +GMK LHG
Sbjct: 220 IEHILIPSKHRDKDKLLFDIMSHLNPYLGIVFAN-TKNTADHIAQYLTGKGMKIGLLHGG 278
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXX 506
L R +K+ + E ++ +L+ARG+D+ V+N +LP D Y HR
Sbjct: 279 LTPRERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTAR 338
Query: 507 XXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEK 554
++I E + + +++K + + + E +G G + ++
Sbjct: 339 AGSSGQAMTIYELTDEDALVRLEK-MGIEFEYLELEKGEWKKGDDRQR 385
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 235 (87.8 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 61/170 (35%), Positives = 92/170 (54%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q A+P L D++ S TGSGKTLA+LLP L +V + S K D
Sbjct: 24 PTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALS---------KRDP 74
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
+I+ P+REL Q+ +++ L+ + KA+ L GG N + Q +AL K +P +V TPG
Sbjct: 75 RVLILLPTRELAHQVYSQLRLLVANTQYKAISVL-GGENFNDQAKALAK-EPHFIVATPG 132
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR---EAMHRIVEHVGRRS 299
RIA+ L +G L+LDE D +L F +A++ +H R++
Sbjct: 133 RIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQT 182
Score = 167 (63.8 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 41/139 (29%), Positives = 65/139 (46%)
Query: 391 YYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKL 450
Y C L HK L R + + VI F + KL A+G A L G+L +
Sbjct: 225 YLC-DHLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQA 283
Query: 451 ARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXX 510
AR+ + +F G+ ++LVT ++++RGLD+ LV+N D+P + Y HR
Sbjct: 284 ARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAK 343
Query: 511 XXVVSICEEPEVFVVKKMQ 529
+S+ + KK+Q
Sbjct: 344 GDAISLVGPKDWDSFKKVQ 362
Score = 86 (35.3 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
Identities = 28/88 (31%), Positives = 38/88 (43%)
Query: 243 KPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGAN 302
+P +V TPGRIA+ L +G L+LDE D +L F + I E +
Sbjct: 123 EPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHK---- 178
Query: 303 PREPKSALAMRAERQTIMVSATVPFSVI 330
RQT+M SAT+ S I
Sbjct: 179 ------------RRQTLMFSATLDHSEI 194
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 235 (87.8 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 61/170 (35%), Positives = 92/170 (54%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q A+P L D++ S TGSGKTLA+LLP L +V + S K D
Sbjct: 24 PTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALS---------KRDP 74
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
+I+ P+REL Q+ +++ L+ + KA+ L GG N + Q +AL K +P +V TPG
Sbjct: 75 RVLILLPTRELAHQVYSQLRLLVANTQYKAISVL-GGENFNDQAKALAK-EPHFIVATPG 132
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR---EAMHRIVEHVGRRS 299
RIA+ L +G L+LDE D +L F +A++ +H R++
Sbjct: 133 RIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQT 182
Score = 167 (63.8 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
Identities = 41/139 (29%), Positives = 65/139 (46%)
Query: 391 YYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKL 450
Y C L HK L R + + VI F + KL A+G A L G+L +
Sbjct: 225 YLC-DHLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQA 283
Query: 451 ARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXX 510
AR+ + +F G+ ++LVT ++++RGLD+ LV+N D+P + Y HR
Sbjct: 284 ARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAK 343
Query: 511 XXVVSICEEPEVFVVKKMQ 529
+S+ + KK+Q
Sbjct: 344 GDAISLVGPKDWDSFKKVQ 362
Score = 86 (35.3 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
Identities = 28/88 (31%), Positives = 38/88 (43%)
Query: 243 KPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGAN 302
+P +V TPGRIA+ L +G L+LDE D +L F + I E +
Sbjct: 123 EPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHK---- 178
Query: 303 PREPKSALAMRAERQTIMVSATVPFSVI 330
RQT+M SAT+ S I
Sbjct: 179 ------------RRQTLMFSATLDHSEI 194
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 248 (92.4 bits), Expect = 9.6e-30, Sum P(2) = 9.6e-30
Identities = 79/243 (32%), Positives = 118/243 (48%)
Query: 103 ESAPFAANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
+S P A F ++ PT VQ +IP++L N D++ + TGSGKT
Sbjct: 132 DSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTA 191
Query: 163 AYLLPILSKV---GPLKDKSSNGNGESGKKTDIE-AVIVAPSRELGMQIVREIKKLLGPS 218
A+LLPI+ + GP D +G++T A++++P+REL +QI +E K S
Sbjct: 192 AFLLPIIQHILAGGP--DMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKF---S 246
Query: 219 DKKAVQQ--LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276
K +Q L GG R + + I++ TPGR+ +I G + GCR+LVLDE
Sbjct: 247 YKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEA 306
Query: 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
D +L F + +IV G+ P PK+A R T M SAT P + A+ +
Sbjct: 307 DRMLDMGFEPQIRKIV---GQ---GMP--PKTA------RTTAMFSATFPKEIQVLAKDF 352
Query: 337 GHD 339
D
Sbjct: 353 LKD 355
Score = 157 (60.3 bits), Expect = 9.6e-30, Sum P(2) = 9.6e-30
Identities = 30/107 (28%), Positives = 58/107 (54%)
Query: 394 VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARS 453
V +++ + + + ++ V+ F+ R + + L + +++ +HGDL ++ R
Sbjct: 379 VNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 438
Query: 454 TTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
L+ F++G+ +LV ++ARGLD+ V+N DLP DS Y HR
Sbjct: 439 RNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHR 485
Score = 38 (18.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 131 NVPTEVQSAAIPSILKN 147
N+P EV ++P+ +++
Sbjct: 124 NIPVEVSGDSVPAAIEH 140
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 205 (77.2 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 50/166 (30%), Positives = 86/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +QS AI I+ D + Q+ +G+GKT + + +L + K
Sbjct: 46 FETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDT-------------KS 92
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +A+I++P+REL +QI + + K LG +GG N + L++ + IV G
Sbjct: 93 KECQALILSPTRELAIQI-QNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQQ-IVSG 150
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ L T + L+LDE DEL + F+E ++ I +H+
Sbjct: 151 TPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHL 196
Score = 181 (68.8 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 42/161 (26%), Positives = 78/161 (48%)
Query: 378 KQADQSLPPALKHYYCVTKLQH-KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR 436
K+ + SL +K YY + + K DTL L + F N ++ +++ +
Sbjct: 230 KRDEISLS-GIKQYYVQCEREDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQ 288
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
+HGD+ + R + + F+ G RVL++ ++ ARG+DV + LV+N DLPTD +
Sbjct: 289 NFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKEN 348
Query: 497 YAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
Y HR +++ + +V +K+ +K + I+
Sbjct: 349 YIHRIGRSGRFGRKGTAINLITKDDVVTLKEFEKYYSTKIK 389
Score = 50 (22.7 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
Q ++VSAT+P V+ + DP+ + K
Sbjct: 201 QVVVVSATLPREVLEMTSKFTTDPVKILVK 230
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 235 (87.8 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 62/162 (38%), Positives = 87/162 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F TE+Q AIP + D++ S TGSGKTLA++LP+L K LK K+ S K
Sbjct: 25 FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK--SLKTKAF-----SAK- 76
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
D +I+ P+REL Q+ E++ +LG A + GG N + Q +AL + P +V
Sbjct: 77 -DPRGLILVPTRELAKQVYGELRSMLGGLSYTATL-ITGGENFNDQVKALARG-PRFIVA 133
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+A+ L G LVLDE D +L F + + RI
Sbjct: 134 TPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRI 175
Score = 161 (61.7 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 42/150 (28%), Positives = 71/150 (47%)
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVF-KLEARGMKAAELHGDL 447
+H+Y L HK L R + + + VI F TR D + KL +KA L G+L
Sbjct: 226 QHFYLCDHLDHKEALLDRILADAEYRQVIIF-TATRADTDRLTEKLNQNNLKAVALSGNL 284
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
+ R+T + +F+ ++LVT ++++RGLD+ V+N D+P + Y HR
Sbjct: 285 NQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRA 344
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
+S+ + K+++ L IQ
Sbjct: 345 GNKGDAMSLVGPKDWESFKRVEAFLQQEIQ 374
Score = 88 (36.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 31/100 (31%), Positives = 42/100 (42%)
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
L+ G + P +V TPGR+A+ L G LVLDE D +L F
Sbjct: 110 LITGGENFNDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFA 169
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV 325
+ + RI H + A R RQT+M SAT+
Sbjct: 170 KELRRI--H----NAAKHRR----------RQTLMFSATL 193
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 235 (87.8 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 62/162 (38%), Positives = 87/162 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F TE+Q AIP + D++ S TGSGKTLA++LP+L K LK K+ S K
Sbjct: 25 FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK--SLKTKAF-----SAK- 76
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
D +I+ P+REL Q+ E++ +LG A + GG N + Q +AL + P +V
Sbjct: 77 -DPRGLILVPTRELAKQVYGELRSMLGGLSYTATL-ITGGENFNDQVKALARG-PRFIVA 133
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+A+ L G LVLDE D +L F + + RI
Sbjct: 134 TPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRI 175
Score = 161 (61.7 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 42/150 (28%), Positives = 71/150 (47%)
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVF-KLEARGMKAAELHGDL 447
+H+Y L HK L R + + + VI F TR D + KL +KA L G+L
Sbjct: 226 QHFYLCDHLDHKEALLDRILADAEYRQVIIF-TATRADTDRLTEKLNQNNLKAVALSGNL 284
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
+ R+T + +F+ ++LVT ++++RGLD+ V+N D+P + Y HR
Sbjct: 285 NQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRA 344
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
+S+ + K+++ L IQ
Sbjct: 345 GNKGDAMSLVGPKDWESFKRVEAFLQQEIQ 374
Score = 88 (36.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 31/100 (31%), Positives = 42/100 (42%)
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
L+ G + P +V TPGR+A+ L G LVLDE D +L F
Sbjct: 110 LITGGENFNDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFA 169
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV 325
+ + RI H + A R RQT+M SAT+
Sbjct: 170 KELRRI--H----NAAKHRR----------RQTLMFSATL 193
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 201 (75.8 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 53/162 (32%), Positives = 85/162 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ P+ +Q AI I + DV+ Q+ +G+GKT + + L ++ E+ K
Sbjct: 43 YETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIN-----------ENEKA 91
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T +A+I+AP+REL +QI + + +G K V +GG + S EA R IVVG
Sbjct: 92 T--QALILAPTRELALQI-KNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQ-IVVG 147
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ ++ T + +LDE DE+LS F+E ++ I
Sbjct: 148 TPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNI 189
Score = 186 (70.5 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 39/158 (24%), Positives = 80/158 (50%)
Query: 381 DQSLPPALKHYYCVTKLQ-HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K +Y +L+ +K D L ++ + F N +++ KL +
Sbjct: 229 DELTLEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFT 288
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +H DL + R T +K+F++G R+L++ +L ARG+DV + LV+N DLP + +Y H
Sbjct: 289 VSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 348
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
R ++ + +V ++++++K + I+
Sbjct: 349 RIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIE 386
Score = 47 (21.6 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + ++P+ ++ K+ + LE +
Sbjct: 198 QIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGI 236
Score = 43 (20.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 458 KFKNGEVRVLVT-NELSARGL 477
KF N VR+LV +EL+ G+
Sbjct: 216 KFMNNPVRILVKKDELTLEGI 236
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 201 (75.8 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 53/162 (32%), Positives = 85/162 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ P+ +Q AI I + DV+ Q+ +G+GKT + + L ++ E+ K
Sbjct: 43 YETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIN-----------ENEKA 91
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T +A+I+AP+REL +QI + + +G K V +GG + S EA R IVVG
Sbjct: 92 T--QALILAPTRELALQI-KNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQ-IVVG 147
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ ++ T + +LDE DE+LS F+E ++ I
Sbjct: 148 TPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNI 189
Score = 186 (70.5 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 39/158 (24%), Positives = 80/158 (50%)
Query: 381 DQSLPPALKHYYCVTKLQ-HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K +Y +L+ +K D L ++ + F N +++ KL +
Sbjct: 229 DELTLEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFT 288
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +H DL + R T +K+F++G R+L++ +L ARG+DV + LV+N DLP + +Y H
Sbjct: 289 VSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 348
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
R ++ + +V ++++++K + I+
Sbjct: 349 RIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIE 386
Score = 47 (21.6 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + ++P+ ++ K+ + LE +
Sbjct: 198 QIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGI 236
Score = 43 (20.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 458 KFKNGEVRVLVT-NELSARGL 477
KF N VR+LV +EL+ G+
Sbjct: 216 KFMNNPVRILVKKDELTLEGI 236
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 242 (90.2 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 62/165 (37%), Positives = 96/165 (58%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q+AAIP +L+ D + ++ TG+GKT A+ LP+L+K+ + K
Sbjct: 46 FVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKP---------- 95
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA-VQQLVGGANRSRQEEALRKNKPAIVV 248
+A+++AP+REL +Q+ EIK L G + K V ++ GGA+ Q AL K+ IVV
Sbjct: 96 ---QAIVMAPTRELAIQVAAEIKNL-GQNIKGLKVLEIYGGASILDQMRAL-KSGAHIVV 150
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
GTPGR+ ++ +LH C +LDE DE+L F + + I+E
Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Score = 160 (61.4 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 38/113 (33%), Positives = 55/113 (48%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
++ Y V K K + + R + + I F+ + + L ARG KAA LHGD+
Sbjct: 240 VEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDI 299
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R T+ K G + +LV ++ ARGLDV V N D+P D Y HR
Sbjct: 300 PQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHR 352
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 242 (90.2 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 62/165 (37%), Positives = 96/165 (58%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q+AAIP +L+ D + ++ TG+GKT A+ LP+L+K+ + K
Sbjct: 46 FVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKP---------- 95
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA-VQQLVGGANRSRQEEALRKNKPAIVV 248
+A+++AP+REL +Q+ EIK L G + K V ++ GGA+ Q AL K+ IVV
Sbjct: 96 ---QAIVMAPTRELAIQVAAEIKNL-GQNIKGLKVLEIYGGASILDQMRAL-KSGAHIVV 150
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
GTPGR+ ++ +LH C +LDE DE+L F + + I+E
Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIME 195
Score = 160 (61.4 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 38/113 (33%), Positives = 55/113 (48%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
++ Y V K K + + R + + I F+ + + L ARG KAA LHGD+
Sbjct: 240 VEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDI 299
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R T+ K G + +LV ++ ARGLDV V N D+P D Y HR
Sbjct: 300 PQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHR 352
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 242 (90.2 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 73/198 (36%), Positives = 107/198 (54%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
T +Q AIP IL D++ Q+ TG+GKTLA++LPIL K+ P ES +D++
Sbjct: 29 TPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDP----------ES---SDVQ 75
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
A+IVAP+REL +QI EIKK+L + V + GG + ++Q L+ N IVV TPGR
Sbjct: 76 ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTH-IVVATPGR 134
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV-GRR-----SGANPREPK 307
+ + + +VLDE D++L F F + I++ G + S P++ K
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIK 194
Query: 308 SALAMRA--ERQTIMVSA 323
LA R E Q I V +
Sbjct: 195 K-LAKRYMDEPQMIQVQS 211
Score = 151 (58.2 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 36/138 (26%), Positives = 60/138 (43%)
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
K D LR + + F + L+ G AELHGD+ + R +K F
Sbjct: 231 KPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSF 290
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEE 519
+ +++ L+ +++ARGLDV V N D+P D Y HR ++
Sbjct: 291 REAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAA 350
Query: 520 PEVFVVKKMQKQLAVPIQ 537
+ +++++K L PIQ
Sbjct: 351 KDEKHLEEIEKTLGAPIQ 368
Score = 57 (25.1 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 316 RQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+QT++ SAT+P + + A+ + +P ++Q ++
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQS 211
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 242 (90.2 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 73/198 (36%), Positives = 107/198 (54%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
T +Q AIP IL D++ Q+ TG+GKTLA++LPIL K+ P ES +D++
Sbjct: 29 TPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDP----------ES---SDVQ 75
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
A+IVAP+REL +QI EIKK+L + V + GG + ++Q L+ N IVV TPGR
Sbjct: 76 ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTH-IVVATPGR 134
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV-GRR-----SGANPREPK 307
+ + + +VLDE D++L F F + I++ G + S P++ K
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSATIPKDIK 194
Query: 308 SALAMRA--ERQTIMVSA 323
LA R E Q I V +
Sbjct: 195 K-LAKRYMDEPQMIQVQS 211
Score = 151 (58.2 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 36/138 (26%), Positives = 60/138 (43%)
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
K D LR + + F + L+ G AELHGD+ + R +K F
Sbjct: 231 KPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSF 290
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEE 519
+ +++ L+ +++ARGLDV V N D+P D Y HR ++
Sbjct: 291 REAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAA 350
Query: 520 PEVFVVKKMQKQLAVPIQ 537
+ +++++K L PIQ
Sbjct: 351 KDEKHLEEIEKTLGAPIQ 368
Score = 57 (25.1 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 316 RQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+QT++ SAT+P + + A+ + +P ++Q ++
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQS 211
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 263 (97.6 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 75/211 (35%), Positives = 114/211 (54%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG+ G+
Sbjct: 201 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGR 260
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 261 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 316
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 317 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 369
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 370 PKGV------RHTMMFSATFPKEIQMLARDF 394
Score = 134 (52.2 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 32/122 (26%), Positives = 56/122 (45%)
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
++A ++I T++ D++ L G +HGD + R L +F++G+ +
Sbjct: 433 LNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 492
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVK 526
LV ++ARGLD++ V+N DLP+D Y HR S E + + K
Sbjct: 493 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 552
Query: 527 KM 528
+
Sbjct: 553 DL 554
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 263 (97.6 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 75/211 (35%), Positives = 114/211 (54%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG+ G+
Sbjct: 202 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGR 261
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 262 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 317
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 318 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 370
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 371 PKGV------RHTMMFSATFPKEIQMLARDF 395
Score = 134 (52.2 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 32/122 (26%), Positives = 56/122 (45%)
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
++A ++I T++ D++ L G +HGD + R L +F++G+ +
Sbjct: 434 LNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 493
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVK 526
LV ++ARGLD++ V+N DLP+D Y HR S E + + K
Sbjct: 494 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITK 553
Query: 527 KM 528
+
Sbjct: 554 DL 555
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 262 (97.3 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 75/211 (35%), Positives = 113/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG G+
Sbjct: 245 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 304
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 305 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 360
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 361 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 413
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 414 PKGV------RHTMMFSATFPKEIQMLARDF 438
Score = 136 (52.9 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 35/129 (27%), Positives = 60/129 (46%)
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKF 459
+D L D+ T++ F+ T++ D++ L G +HGD + R L +F
Sbjct: 474 LDLLNATESGKDSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 531
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEE 519
++G+ +LV ++ARGLD++ V+N DLP+D Y HR S E
Sbjct: 532 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 591
Query: 520 PEVFVVKKM 528
+ + K +
Sbjct: 592 RNINITKDL 600
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 264 (98.0 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 75/223 (33%), Positives = 115/223 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP L+N D++ + TGSGKT A+L+P+L + L + G
Sbjct: 410 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 469
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I+AP+REL QI E K P + V ++GG +R Q LR IV+
Sbjct: 470 ----AIILAPTRELAQQIEEETIKFGKPLGIRTVA-VIGGISREDQGFRLRMGCE-IVIA 523
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV---GRRSGANPRE- 305
TPGR+ ++ L C ++VLDE D ++ F + +I+EH+ ++ + E
Sbjct: 524 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAED 583
Query: 306 PKSALA-----MRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
P+ LA RQT+M +AT+P +V R ARS+ P +V
Sbjct: 584 PEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVV 626
Score = 136 (52.9 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 35/126 (27%), Positives = 54/126 (42%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+I F+N + LE G A LHG G+ R L K G +LV +++ R
Sbjct: 666 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 725
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSIC--EEPEVFVVKKMQKQLA 533
G+D+ + +VVN D+ + Y HR ++ E+ VF K Q L
Sbjct: 726 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELK-QAILE 784
Query: 534 VPIQAC 539
P+ +C
Sbjct: 785 SPVSSC 790
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 264 (98.0 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 75/223 (33%), Positives = 115/223 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP L+N D++ + TGSGKT A+L+P+L + L + G
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I+AP+REL QI E K P + V ++GG +R Q LR IV+
Sbjct: 471 ----AIILAPTRELAQQIEEETIKFGKPLGIRTVA-VIGGISREDQGFRLRMGCE-IVIA 524
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV---GRRSGANPRE- 305
TPGR+ ++ L C ++VLDE D ++ F + +I+EH+ ++ + E
Sbjct: 525 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAED 584
Query: 306 PKSALA-----MRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
P+ LA RQT+M +AT+P +V R ARS+ P +V
Sbjct: 585 PEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVV 627
Score = 136 (52.9 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 35/126 (27%), Positives = 54/126 (42%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+I F+N + LE G A LHG G+ R L K G +LV +++ R
Sbjct: 667 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 726
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSIC--EEPEVFVVKKMQKQLA 533
G+D+ + +VVN D+ + Y HR ++ E+ VF K Q L
Sbjct: 727 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELK-QAILE 785
Query: 534 VPIQAC 539
P+ +C
Sbjct: 786 SPVSSC 791
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 264 (98.0 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 75/223 (33%), Positives = 115/223 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP L+N D++ + TGSGKT A+L+P+L + L + G
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I+AP+REL QI E K P + V ++GG +R Q LR IV+
Sbjct: 471 ----AIILAPTRELAQQIEEETIKFGKPLGIRTVA-VIGGISREDQGFRLRMGCE-IVIA 524
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV---GRRSGANPRE- 305
TPGR+ ++ L C ++VLDE D ++ F + +I+EH+ ++ + E
Sbjct: 525 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAED 584
Query: 306 PKSALA-----MRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
P+ LA RQT+M +AT+P +V R ARS+ P +V
Sbjct: 585 PEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVV 627
Score = 136 (52.9 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 35/126 (27%), Positives = 54/126 (42%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+I F+N + LE G A LHG G+ R L K G +LV +++ R
Sbjct: 667 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 726
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSIC--EEPEVFVVKKMQKQLA 533
G+D+ + +VVN D+ + Y HR ++ E+ VF K Q L
Sbjct: 727 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELK-QAILE 785
Query: 534 VPIQAC 539
P+ +C
Sbjct: 786 SPVSSC 791
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 264 (98.0 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 75/223 (33%), Positives = 115/223 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP L+N D++ + TGSGKT A+L+P+L + L + G
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I+AP+REL QI E K P + V ++GG +R Q LR IV+
Sbjct: 471 ----AIILAPTRELAQQIEEETIKFGKPLGIRTVA-VIGGISREDQGFRLRMGCE-IVIA 524
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV---GRRSGANPRE- 305
TPGR+ ++ L C ++VLDE D ++ F + +I+EH+ ++ + E
Sbjct: 525 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAED 584
Query: 306 PKSALA-----MRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
P+ LA RQT+M +AT+P +V R ARS+ P +V
Sbjct: 585 PEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVV 627
Score = 136 (52.9 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 35/126 (27%), Positives = 54/126 (42%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+I F+N + LE G A LHG G+ R L K G +LV +++ R
Sbjct: 667 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 726
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSIC--EEPEVFVVKKMQKQLA 533
G+D+ + +VVN D+ + Y HR ++ E+ VF K Q L
Sbjct: 727 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELK-QAILE 785
Query: 534 VPIQAC 539
P+ +C
Sbjct: 786 SPVSSC 791
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 214 (80.4 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 53/165 (32%), Positives = 87/165 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +QSA+I ++ D++ Q+ TG+GKT A+ LP+L+KV +
Sbjct: 26 YEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVT--------------SQ 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T + +++AP+REL +Q+ V + GG + +Q AL++ P ++VG
Sbjct: 72 TTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRG-PQVIVG 130
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEH 294
TPGR+ + G L + LVLDE DE+L F + + I+EH
Sbjct: 131 TPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEH 175
Score = 189 (71.6 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 398 QH-KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
QH K++ L R + + + +I F+ + KLEARG ++ LHGD+ + AR +
Sbjct: 228 QHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAV 287
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
++ KNG++ +L+ +++ARGLDV VVN D+P D+ Y HR
Sbjct: 288 EQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHR 331
Score = 38 (18.4 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 315 ERQTIMVSATVPFSVIRAA 333
+RQ + SAT+P + R A
Sbjct: 179 QRQLALFSATMPEQIKRVA 197
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 262 (97.3 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 75/211 (35%), Positives = 113/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG G+
Sbjct: 202 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 261
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 262 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 317
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 318 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 370
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 371 PKGV------RHTMMFSATFPKEIQMLARDF 395
Score = 133 (51.9 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 440 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 497
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 555
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 262 (97.3 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 75/211 (35%), Positives = 113/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG G+
Sbjct: 203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 262
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 263 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 318
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 371
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 372 PKGV------RHTMMFSATFPKEIQMLARDF 396
Score = 133 (51.9 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 441 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 556
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 262 (97.3 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 75/211 (35%), Positives = 113/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG G+
Sbjct: 203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 262
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 263 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 318
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 371
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 372 PKGV------RHTMMFSATFPKEIQMLARDF 396
Score = 133 (51.9 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 441 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 556
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 198 (74.8 bits), Expect = 9.0e-29, Sum P(3) = 9.0e-29
Identities = 52/162 (32%), Positives = 87/162 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I++ HDV+ Q+ +G+GKT + + L ++ ++ K
Sbjct: 42 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI------------DTSVK 89
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL +QI + + L D K V +GG + E LR + IVVG
Sbjct: 90 AP-QALMLAPTRELALQIQKVVMALAFHMDIK-VHACIGGTSFVEDAEGLRDAQ--IVVG 145
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ + + T + +LDE DE+LS F+E +++I
Sbjct: 146 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 187
Score = 183 (69.5 bits), Expect = 9.0e-29, Sum P(3) = 9.0e-29
Identities = 38/158 (24%), Positives = 79/158 (50%)
Query: 381 DQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K +Y V + ++K + L ++ + F N R++++ KL
Sbjct: 227 DELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFT 286
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ ++ DL + R T +K+F++G R+L++ +L ARG+DV + LV+N DLP + +Y H
Sbjct: 287 VSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
R ++ +V +++++K + I+
Sbjct: 347 RIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 384
Score = 47 (21.6 bits), Expect = 9.0e-29, Sum P(3) = 9.0e-29
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + +P+ ++ K+ + LE +
Sbjct: 196 QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGI 234
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 198 (74.8 bits), Expect = 9.0e-29, Sum P(3) = 9.0e-29
Identities = 52/162 (32%), Positives = 87/162 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I++ HDV+ Q+ +G+GKT + + L ++ ++ K
Sbjct: 42 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI------------DTSVK 89
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL +QI + + L D K V +GG + E LR + IVVG
Sbjct: 90 AP-QALMLAPTRELALQIQKVVMALAFHMDIK-VHACIGGTSFVEDAEGLRDAQ--IVVG 145
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ + + T + +LDE DE+LS F+E +++I
Sbjct: 146 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 187
Score = 183 (69.5 bits), Expect = 9.0e-29, Sum P(3) = 9.0e-29
Identities = 38/158 (24%), Positives = 79/158 (50%)
Query: 381 DQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K +Y V + ++K + L ++ + F N R++++ KL
Sbjct: 227 DELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFT 286
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ ++ DL + R T +K+F++G R+L++ +L ARG+DV + LV+N DLP + +Y H
Sbjct: 287 VSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
R ++ +V +++++K + I+
Sbjct: 347 RIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 384
Score = 47 (21.6 bits), Expect = 9.0e-29, Sum P(3) = 9.0e-29
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + +P+ ++ K+ + LE +
Sbjct: 196 QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGI 234
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 258 (95.9 bits), Expect = 9.2e-29, Sum P(2) = 9.2e-29
Identities = 73/209 (34%), Positives = 110/209 (52%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP ++ NG G+
Sbjct: 181 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGR 240
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ ++++AP+REL +QI E +K S + + GGA+ +Q L + ++
Sbjct: 241 RKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCV-VYGGADIGQQIRDLERGCH-LL 298
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE + PK
Sbjct: 299 VATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMPPK 351
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSW 336
R T+M SAT P + AR +
Sbjct: 352 GV------RHTMMFSATFPKEIQMLARDF 374
Score = 136 (52.9 bits), Expect = 9.2e-29, Sum P(2) = 9.2e-29
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ DA+ L G +HGD + R L +F++G+ +LV
Sbjct: 419 DSLTLV-FVE-TKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 476
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 477 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 534
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 203 (76.5 bits), Expect = 9.2e-29, Sum P(3) = 9.2e-29
Identities = 59/176 (33%), Positives = 89/176 (50%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
P +Q +P L DV+ Q+ TG GKT A+ +P+L ++ ++G+G
Sbjct: 33 PFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRI-------TSGDGTRPLTGAP 85
Query: 193 EAVIVAPSRELGMQIVREIK---KLL--GPS--DKKAVQQ------LVGGANRSRQEEAL 239
A++V P+REL +Q+ ++ K L GP D AV++ + GG Q EAL
Sbjct: 86 RALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEAL 145
Query: 240 RKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
R +VVGTPGR+ ++ G L G LVLDE DE+L F + RI+ +
Sbjct: 146 RAGAD-VVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQI 200
Score = 177 (67.4 bits), Expect = 9.2e-29, Sum P(3) = 9.2e-29
Identities = 38/123 (30%), Positives = 59/123 (47%)
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
KV+ + R + A D + F R + +L RG +HGDLG+LAR LK F
Sbjct: 257 KVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAF 316
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEE 519
+ G + VLV +++ARG+D+ + V+N P D Y HR V++ +
Sbjct: 317 RTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDW 376
Query: 520 PEV 522
E+
Sbjct: 377 DEL 379
Score = 56 (24.8 bits), Expect = 9.2e-29, Sum P(3) = 9.2e-29
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
A+RQ+++ SAT+P +I AR++ P ++A+
Sbjct: 202 ADRQSMLFSATMPDPIITLARTFMVRPTHIRAE 234
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 264 (98.0 bits), Expect = 9.5e-29, Sum P(2) = 9.5e-29
Identities = 76/211 (36%), Positives = 113/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + K+ NG G+
Sbjct: 204 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGR 263
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 264 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 319
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 320 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 372
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 373 PKGV------RHTMMFSATFPKEIQMLARDF 397
Score = 130 (50.8 bits), Expect = 9.5e-29, Sum P(2) = 9.5e-29
Identities = 30/90 (33%), Positives = 51/90 (56%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 442 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 499
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
++ARGLD++ V+N DLP+D Y HR
Sbjct: 500 AVAARGLDISNVKHVINFDLPSDIEEYVHR 529
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 256 (95.2 bits), Expect = 9.7e-29, Sum P(2) = 9.7e-29
Identities = 73/224 (32%), Positives = 113/224 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP L+ D++ + TGSGKT A++LP+LS V L + + G
Sbjct: 718 YEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYE-TSQDGPY 776
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++APSREL +QI E K + V +VGG N Q LR+ IV+G
Sbjct: 777 ----ALVIAPSRELAIQIYEETNKFASYCSCRTVA-VVGGRNAEAQAFELRRGVE-IVIG 830
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ + + C +++LDE D ++ F + +H I++ + +N + A
Sbjct: 831 TPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPT---SNLKSEDDA 887
Query: 310 LAMRAE----------RQTIMVSATVPFSVIRAARSWGHDPLLV 343
LA++ E R T M SAT+P SV R +R + P +
Sbjct: 888 LALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYI 931
Score = 146 (56.5 bits), Expect = 9.7e-29, Sum P(2) = 9.7e-29
Identities = 32/86 (37%), Positives = 47/86 (54%)
Query: 416 VIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
+I F+N +++ D + K + KA LHG + R TL FKN E +LV +++
Sbjct: 970 IIVFVNQ-KKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAG 1028
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHR 500
RG+DV LV+N D+P D Y HR
Sbjct: 1029 RGIDVHGVKLVINFDMPKDIESYTHR 1054
Score = 37 (18.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 220 KKAVQQ----LVGGANRSRQEEALRKNKPAIVV 248
K++++Q L G + + +E L +P I+V
Sbjct: 940 KRSIEQKLEFLTEGKKKQKLQEILEMYEPPIIV 972
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 256 (95.2 bits), Expect = 9.7e-29, Sum P(2) = 9.7e-29
Identities = 73/224 (32%), Positives = 113/224 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP L+ D++ + TGSGKT A++LP+LS V L + + G
Sbjct: 718 YEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYE-TSQDGPY 776
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++APSREL +QI E K + V +VGG N Q LR+ IV+G
Sbjct: 777 ----ALVIAPSRELAIQIYEETNKFASYCSCRTVA-VVGGRNAEAQAFELRRGVE-IVIG 830
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ + + C +++LDE D ++ F + +H I++ + +N + A
Sbjct: 831 TPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPT---SNLKSEDDA 887
Query: 310 LAMRAE----------RQTIMVSATVPFSVIRAARSWGHDPLLV 343
LA++ E R T M SAT+P SV R +R + P +
Sbjct: 888 LALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYI 931
Score = 146 (56.5 bits), Expect = 9.7e-29, Sum P(2) = 9.7e-29
Identities = 32/86 (37%), Positives = 47/86 (54%)
Query: 416 VIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
+I F+N +++ D + K + KA LHG + R TL FKN E +LV +++
Sbjct: 970 IIVFVNQ-KKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAG 1028
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHR 500
RG+DV LV+N D+P D Y HR
Sbjct: 1029 RGIDVHGVKLVINFDMPKDIESYTHR 1054
Score = 37 (18.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 220 KKAVQQ----LVGGANRSRQEEALRKNKPAIVV 248
K++++Q L G + + +E L +P I+V
Sbjct: 940 KRSIEQKLEFLTEGKKKQKLQEILEMYEPPIIV 972
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 261 (96.9 bits), Expect = 9.9e-29, Sum P(2) = 9.9e-29
Identities = 75/211 (35%), Positives = 112/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG G+
Sbjct: 203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGR 262
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA +Q L +
Sbjct: 263 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGAEIGQQIRDLERGCH- 318
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 371
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 372 PKGV------RHTMMFSATFPKEIQMLARDF 396
Score = 133 (51.9 bits), Expect = 9.9e-29, Sum P(2) = 9.9e-29
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 441 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 556
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 261 (96.9 bits), Expect = 9.9e-29, Sum P(2) = 9.9e-29
Identities = 75/211 (35%), Positives = 112/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG G+
Sbjct: 203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGR 262
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA +Q L +
Sbjct: 263 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGAEIGQQIRDLERGCH- 318
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 371
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 372 PKGV------RHTMMFSATFPKEIQMLARDF 396
Score = 133 (51.9 bits), Expect = 9.9e-29, Sum P(2) = 9.9e-29
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 441 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 556
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 266 (98.7 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
Identities = 71/222 (31%), Positives = 114/222 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AAIP +++ D++ + TGSGKT A+LLP+L + L E K
Sbjct: 366 YKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEF---EWRKN 422
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++AP+REL QI E KK P V +VGG + Q +LR N I++
Sbjct: 423 DGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVS-IVGGHSFEEQAYSLR-NGAEIIIA 480
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV---GRRSGANPREP 306
TPGR+ + L C ++++DE D ++ F E +++I++ + + E
Sbjct: 481 TPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAED 540
Query: 307 KSALAMRAE-----RQTIMVSATVPFSVIRAARSWGHDPLLV 343
SA++ RQT+M +AT+P +V R AR + P +V
Sbjct: 541 SSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIV 582
Score = 130 (50.8 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 416 VIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
+I F+N R DA+ + ++ G + LHG + R L +NG VLV +L+
Sbjct: 624 IIVFVNIKRNC-DAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAG 682
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHR 500
RG+DV + LV+N ++ T Y HR
Sbjct: 683 RGIDVPDVSLVINFNMATSIESYTHR 708
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 257 (95.5 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 76/211 (36%), Positives = 113/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GP---LKD-KSSNGNGE 185
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP L+ K++NG
Sbjct: 179 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKATNGRYG 238
Query: 186 SGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA 245
K+ I ++++AP+REL +QI E +K S + + GGA+ +Q L +
Sbjct: 239 RRKQYPI-SLVLAPTRELAVQIYEEARKFAYRSRVRPCV-VYGGADIGQQIRDLERGCH- 295
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 296 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 348
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 349 PKGV------RHTMMFSATFPKEIQMLARDF 373
Score = 136 (52.9 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ DA+ L G +HGD + R L +F++G+ +LV
Sbjct: 418 DSLTLV-FVE-TKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 475
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 476 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 533
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 265 (98.3 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 76/211 (36%), Positives = 113/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + K+ NG G+
Sbjct: 202 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGR 261
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 262 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADTVQQIRDLERGCH- 317
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 318 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 370
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 371 PKGV------RHTMMFSATFPKEIQMLARDF 395
Score = 127 (49.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 412 DAQTVIAFMNNTRQLKDAV--FKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
D+ T++ F+ T++ D++ F + R +HGD + R L +F++G +LV
Sbjct: 440 DSLTLV-FVE-TKKGADSLENFLFQER-YACTSIHGDRSQKDREEALHQFRSGRKPILVA 496
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 497 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDL 555
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 262 (97.3 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 75/211 (35%), Positives = 113/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG G+
Sbjct: 203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 262
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 263 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 318
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 371
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 372 PKGV------RHTMMFSATFPKEIQMLARDF 396
Score = 130 (50.8 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 30/90 (33%), Positives = 51/90 (56%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 441 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
++ARGLD++ V+N DLP+D Y HR
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHR 528
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 261 (96.9 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 76/211 (36%), Positives = 112/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I D++ + TGSGKT A+LLPILS++ GP + K+ NG G+
Sbjct: 198 PTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGR 257
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 258 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 313
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 314 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 366
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 367 PKGV------RHTMMFSATFPKEIQMLARDF 391
Score = 131 (51.2 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 436 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 493
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 494 AVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDL 551
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 261 (96.9 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 76/211 (36%), Positives = 112/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I D++ + TGSGKT A+LLPILS++ GP + K+ NG G+
Sbjct: 201 PTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGR 260
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 261 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERGCH- 316
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 317 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 369
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 370 PKGV------RHTMMFSATFPKEIQMLARDF 394
Score = 131 (51.2 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 439 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 496
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 497 AVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDL 554
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 205 (77.2 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 54/163 (33%), Positives = 89/163 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q+A IP+++ DVV + TG+GKT A+ +P+LSK+ D +S K
Sbjct: 33 YESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKI----DITS--------K 80
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++ P+REL +Q+ + + V + GG++ + Q LR+ +VVG
Sbjct: 81 VP-QALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQ-VVVG 138
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ + L FLVLDE DE+L+ F + + RI+
Sbjct: 139 TPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERIL 181
Score = 180 (68.4 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 37/135 (27%), Positives = 68/135 (50%)
Query: 396 KLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455
++ K+D L R + + +I F+ + ++ KL ARG AA + GD+ + R T
Sbjct: 233 QVARKMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERT 292
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVS 515
+ ++G++ +LV +++ARGLDV V+N D+P D+ Y HR +
Sbjct: 293 ITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALI 352
Query: 516 ICEEPEVFVVKKMQK 530
E+ ++K ++K
Sbjct: 353 FVSPRELHLLKAIEK 367
Score = 50 (22.7 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 316 RQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+Q + SAT+P ++ + + + HDP V K
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCK 218
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 258 (95.9 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 79/227 (34%), Positives = 118/227 (51%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GP---LK--DKSSNGNG 184
PT VQ AIP I D++ + TGSGKT A+LLP+LS++ GP L+ S+ NG
Sbjct: 231 PTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSAQENG 290
Query: 185 ESGKKTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRK 241
+ G++ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 291 KYGRRKQYPISLVLAPTRELALQIYDEARKF---SYRSHVRPCVVYGGADIGQQIRDLER 347
Query: 242 NKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGA 301
++V TPGR+ ++ GK+ C +LVLDE D +L F + RIVE
Sbjct: 348 GCH-LLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQ------- 399
Query: 302 NPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+ PK RQT+M SAT P + AR + D + + V
Sbjct: 400 DTMPPKGL------RQTMMFSATFPKEIQILARDFLEDYIFLAVGRV 440
Score = 134 (52.2 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ DA+ L G +HGD + R L +F++G +LV
Sbjct: 473 DSLTLV-FVE-TKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVAT 530
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
++ARGLD++ V+N DLP+D Y HR
Sbjct: 531 AVAARGLDISNVKHVINFDLPSDIEEYVHR 560
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 208 (78.3 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 53/160 (33%), Positives = 87/160 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
++ PT +Q+ AIPS+ D++ + TGSGKT + LP+L K L++ S+G+ S K
Sbjct: 28 YHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQK---LREDISSGSKNS-KG 83
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV-GGANRSRQEEALRKNKPAIVV 248
+ +++ P+REL Q+ IK + + V GG + + Q ALR I+V
Sbjct: 84 NFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGVD-ILV 142
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
TPGR+ ++ ++ + + LVLDE D +LS F E +
Sbjct: 143 ATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEEL 182
Score = 173 (66.0 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 44/158 (27%), Positives = 73/158 (46%)
Query: 376 QAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEA 435
Q + AD S ++ + V K + K L + + + F+N + KL
Sbjct: 221 QLQSADAST--LVQRVFTVNKGE-KTAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAK 277
Query: 436 RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSI 495
RG+ AA HGD G+ RS L FK G++ VL+ +++ARGLD+ + +V+N +LP
Sbjct: 278 RGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPS 337
Query: 496 HYAHRAXXXXXXXXXXXVVSICEEPEVF---VVKKMQK 530
Y HR +S+ + + V++K K
Sbjct: 338 DYMHRIGRSGRAGEVGLAISLIDHEDYHHFSVIEKKNK 375
Score = 45 (20.9 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
++QT++ SAT P V + ++P+ +Q ++
Sbjct: 192 KKQTLLFSATFPEQVTTLTQELLNNPIEIQLQS 224
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 265 (98.3 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 75/227 (33%), Positives = 118/227 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP L+N D++ + TGSGKTLA+L+P+LS + L + + G
Sbjct: 414 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPY 473
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I+AP+REL QI E K P + V +VGG +R Q LR IV+
Sbjct: 474 ----AIIMAPTRELAQQIEEETTKFGQPLGIRTVV-VVGGLSREEQGFRLRLGCE-IVIA 527
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV---GRRSGANPREP 306
TPGR+ ++ L + C ++VLDE D ++ F + +I+E++ + E
Sbjct: 528 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAED 587
Query: 307 KSAL-----AMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
++ L + RQT+M +AT+P +V R AR++ P V +V
Sbjct: 588 ETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSV 634
Score = 128 (50.1 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 34/126 (26%), Positives = 54/126 (42%)
Query: 416 VIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
VI F+N + D + K LE G + LHG G+ R L K+G +LV +++
Sbjct: 669 VIIFVNQKKGA-DVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAG 727
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVS-ICEEPEVFVVKKMQKQLA 533
RG+D+ + LV+N D+ Y HR +S + ++ Q A
Sbjct: 728 RGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDDSALFYDLKQCVSA 787
Query: 534 VPIQAC 539
P+ C
Sbjct: 788 SPVSTC 793
Score = 41 (19.5 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 232 RSRQEEALRKNKPAIVVGTP 251
RSR E R+++PA VG P
Sbjct: 8 RSRSRERHREDRPA--VGNP 25
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 197 (74.4 bits), Expect = 3.4e-28, Sum P(3) = 3.4e-28
Identities = 50/166 (30%), Positives = 86/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AIP+ILK DV+ Q+ +G+GKT + + +L + +
Sbjct: 46 FEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDT-------------QV 92
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +A+I++P+REL +QI +++ LG +GG N L + +V G
Sbjct: 93 RETQALILSPTRELAVQI-QKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQH-VVSG 150
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ L T + LVLDE DE+L+ F+E ++ I ++
Sbjct: 151 TPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYL 196
Score = 176 (67.0 bits), Expect = 3.4e-28, Sum P(3) = 3.4e-28
Identities = 39/157 (24%), Positives = 76/157 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K++
Sbjct: 232 DELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFT 291
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R +K+F+ G RVL++ ++ ARGLDV + LV+N DLP + Y H
Sbjct: 292 VSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIH 351
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ ++ +V +++ +++ + I
Sbjct: 352 RIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYSTQI 388
Score = 50 (22.7 bits), Expect = 3.4e-28, Sum P(3) = 3.4e-28
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +++SAT+P ++ + DP+ + K + + LE +
Sbjct: 201 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGI 239
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 196 (74.1 bits), Expect = 3.9e-28, Sum P(3) = 3.9e-28
Identities = 49/171 (28%), Positives = 81/171 (47%)
Query: 385 PPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELH 444
P + Y+ V ++ K + L R + A D I F+ + LE G +A L+
Sbjct: 218 PDISQSYWTVWGMR-KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN 276
Query: 445 GDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXX 504
GD+ + R TL++ K+G + +L+ +++ARGLDV LVVN D+P DS Y HR
Sbjct: 277 GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRT 336
Query: 505 XXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEE-EK 554
+ E E +++ +++ + + I E L +GK EK
Sbjct: 337 GRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL-LGKRRLEK 386
Score = 194 (73.4 bits), Expect = 3.9e-28, Sum P(3) = 3.9e-28
Identities = 55/166 (33%), Positives = 82/166 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ P+ +Q+ IP +L DV+ + TGSGKT A+ LP+L + P + K+
Sbjct: 26 YEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDP-ELKAP--------- 75
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +++AP+REL +Q+ + V L GG Q ALR+ P IVVG
Sbjct: 76 ---QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-PQIVVG 131
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + G L LVLDE DE+L F E + I+ +
Sbjct: 132 TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI 177
Score = 45 (20.9 bits), Expect = 3.9e-28, Sum P(3) = 3.9e-28
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
QT + SAT+P ++ R R + +P V+ ++ +
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSV 214
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 196 (74.1 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 49/166 (29%), Positives = 86/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q A+P+ILK DV+ Q+ +G+GKT + + +L + +
Sbjct: 46 FEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDT-------------QV 92
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +A+I++P+REL +QI +++ LG +GG N L + +V G
Sbjct: 93 RETQALILSPTRELAVQI-QKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQH-VVSG 150
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ L T + LVLDE DE+L+ F+E ++ I ++
Sbjct: 151 TPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYL 196
Score = 176 (67.0 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 39/157 (24%), Positives = 76/157 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K++
Sbjct: 232 DELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFT 291
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R +K+F+ G RVL++ ++ ARGLDV + LV+N DLP + Y H
Sbjct: 292 VSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIH 351
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ ++ +V +++ +++ + I
Sbjct: 352 RIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYSTQI 388
Score = 50 (22.7 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +++SAT+P ++ + DP+ + K + + LE +
Sbjct: 201 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGI 239
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 189 (71.6 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 39/121 (32%), Positives = 64/121 (52%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K +Y V K + K+DTL + + F N R++ +L R
Sbjct: 225 DELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFT 284
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R T + +F+ G R+L+T +L ARG+DV + LV+N DLP + +Y H
Sbjct: 285 VSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
Query: 500 R 500
R
Sbjct: 345 R 345
Score = 180 (68.4 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 52/164 (31%), Positives = 83/164 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI IL DV+ Q+ +G+GKT + + +L K+ D S
Sbjct: 39 FERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKI----DTSLK-------- 86
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+I+AP+REL QI +++ LG +GG R + A + +VVG
Sbjct: 87 -QCQALILAPTRELAQQI-QKVVVALGDLMNVECHACIGGT-LVRDDMAALQAGVHVVVG 143
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L T + VLDE DE+LS F++ ++ I +
Sbjct: 144 TPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQ 187
Score = 53 (23.7 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + DP+ ++ K+ + LE +
Sbjct: 194 QVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGI 232
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 197 (74.4 bits), Expect = 6.6e-28, Sum P(3) = 6.6e-28
Identities = 50/162 (30%), Positives = 82/162 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ +PT +Q AIP IL DV + TG+GKT A++LP++ ++ S G +
Sbjct: 24 YTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRL-------STGRARARMP 76
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+I+ P+REL Q+ +K G K + L+GG + QE L++ +++
Sbjct: 77 ---RCLILCPTRELAAQVAENFEKY-GKYLKLTMALLIGGVSFKEQETLLQRGVD-VLIA 131
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ + GKL G L++DE D +L F + +I
Sbjct: 132 TPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKI 173
Score = 167 (63.8 bits), Expect = 6.6e-28, Sum P(3) = 6.6e-28
Identities = 41/133 (30%), Positives = 68/133 (51%)
Query: 404 LRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE 463
LRR + A + + I F N ++ L G AA +HGDL + RS TL++F++G+
Sbjct: 239 LRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGK 298
Query: 464 VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR---AXXXXXXXXXXXVVSICEEP 520
+++LV ++++ARGLD+ + V N P Y HR VV+ ++
Sbjct: 299 LKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDK 358
Query: 521 EV-FVVKKMQKQL 532
FVVK ++K +
Sbjct: 359 SWGFVVKMIKKDV 371
Score = 65 (27.9 bits), Expect = 6.6e-28, Sum P(3) = 6.6e-28
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
G P K + A RQT++ SAT P + R A+++ DP ++
Sbjct: 165 GFIPDIEKICAKLPANRQTLLFSATFPTDIQRLAKTFQKDPKKIE 209
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 195 (73.7 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
Identities = 57/193 (29%), Positives = 98/193 (50%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++ D S +
Sbjct: 27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI----DASL---------FQTQ 73
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
A+++ P+REL Q+ E+++L + L GG Q ++L+ + P I+V TPGR
Sbjct: 74 ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQ-HAPHIIVATPGR 132
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV--GRRS---GANPREPKS 308
+ + G + LV+DE D +L F +A+ ++ R++ A E +
Sbjct: 133 LLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIA 192
Query: 309 ALAMRAERQTIMV 321
A++ R +R + +
Sbjct: 193 AISGRVQRDPLAI 205
Score = 191 (72.3 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
Identities = 45/139 (32%), Positives = 66/139 (47%)
Query: 383 SLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAE 442
+LPP + +Y T + K+ L+R + + + F N + + L G A
Sbjct: 212 ALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALS 270
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAX 502
LHGDL + R TL +F NG RVLV +++ARGLD+ +LVVN +L D + HR
Sbjct: 271 LHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIG 330
Query: 503 XXXXXXXXXXVVSICEEPE 521
+S C PE
Sbjct: 331 RTARAGNSGLAISFCA-PE 348
Score = 51 (23.0 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
A RQT++ SAT P ++ + DPL ++
Sbjct: 176 ASRQTLLFSATWPEAIAAISGRVQRDPLAIE 206
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 187 (70.9 bits), Expect = 9.4e-28, Sum P(3) = 9.4e-28
Identities = 51/162 (31%), Positives = 85/162 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI ++ DV+ Q+ +G+GKT + + IL ++ D S
Sbjct: 50 FEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQI----DTSIR-------- 97
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +A+I+AP+REL QI R + L G K +GG N R++ + ++ +VVG
Sbjct: 98 -ECQALILAPTRELATQIQRVVMAL-GEYMKVHSHACIGGTN-VREDARILESGCHVVVG 154
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ ++ L T + VLDE DE+LS F++ + +
Sbjct: 155 TPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDV 196
Score = 177 (67.4 bits), Expect = 9.4e-28, Sum P(3) = 9.4e-28
Identities = 36/114 (31%), Positives = 62/114 (54%)
Query: 388 LKHYYCVTKLQH-KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y K ++ K+ TL L + F N R++ ++ + +HGD
Sbjct: 243 IKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGD 302
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +K+F++G RVL+T +L ARG+DV + LV+N DLP++ +Y HR
Sbjct: 303 MEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHR 356
Score = 57 (25.1 bits), Expect = 9.4e-28, Sum P(3) = 9.4e-28
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q I++SAT+P V+ +R + DP+ ++ K + LE +
Sbjct: 205 QVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGI 243
Score = 40 (19.1 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 8 RLLLLVGESLPLHKFSCV 25
R+++ +GE + +H +C+
Sbjct: 116 RVVMALGEYMKVHSHACI 133
Score = 37 (18.1 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 536 IQACEFTEGRLVIGKEEEKTLEAVR 560
+ C + ++ K+EE TLE ++
Sbjct: 220 VSRCFMRDPVSILVKKEELTLEGIK 244
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 235 (87.8 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 62/163 (38%), Positives = 87/163 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +QSA P + DV+ + TGSGKTLA+ LP L KV LK K K
Sbjct: 93 FASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQ--------KS 144
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
AV+++P+REL MQI ++ K D + V + GG + Q EAL+ A+VV
Sbjct: 145 CRPLAVVISPTRELAMQIYDQLVKFAEKVDIQ-VACIFGGVKKDEQREALKS--AAVVVA 201
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ ++ G L ++LVLDE D +L F + + I+
Sbjct: 202 TPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDII 244
Score = 146 (56.5 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
V+AF ++ L +G K A +HGDL + R +L+ FK+G VLV +++AR
Sbjct: 326 VLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAAR 385
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHR 500
GLD+ LVVN+ P Y HR
Sbjct: 386 GLDIPHVKLVVNVTFPLTVEDYVHR 410
Score = 95 (38.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 33/110 (30%), Positives = 52/110 (47%)
Query: 234 RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
+ E+ A+VV TPGR+ ++ G L ++LVLDE D +L F + + I+
Sbjct: 186 KDEQREALKSAAVVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDII- 244
Query: 294 HVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
+P P S +RQT+M +AT P V A ++ P+ V
Sbjct: 245 --------SPM-PVS------KRQTVMFTATWPPIVRNLASTFMTSPVTV 279
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 214 (80.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 63/162 (38%), Positives = 92/162 (56%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +QSA IP+ILK HD + + TGSGKT+A+ P+L++ S + G G
Sbjct: 24 PTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQW------SEDPFGIFG----- 72
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
+I+ P+REL +QI + L G + V +VGG + +Q AL++ KP V+ TPG
Sbjct: 73 --LILTPTRELALQIAEQFAAL-GANMNIKVAVVVGGEDFVQQTLALQR-KPHFVIATPG 128
Query: 253 RIAE-ISAAGKLHTHGCR---FLVLDEIDELLSFNFREAMHR 290
R+A+ I +G+ G R +LVLDE D LLS +F + R
Sbjct: 129 RLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQR 170
Score = 167 (63.8 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 43/180 (23%), Positives = 80/180 (44%)
Query: 383 SLPPALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKA 440
++P L+ Y K L +H T + F+N T + L +
Sbjct: 221 AIPSTLQISYVFVPSYVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRV 280
Query: 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
A LH ++ + R+ +L +FK G R+L+ ++++RGLD+ +LV+N D+P D + HR
Sbjct: 281 ASLHSEMPQSERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHR 340
Query: 501 AXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
VSI E ++ ++ +++++ ++ E VI + T A R
Sbjct: 341 VGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKR 400
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 257 (95.5 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 75/211 (35%), Positives = 112/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSG T A+LLPILS++ GP + K+ NG G+
Sbjct: 196 PTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEALKAMKENGRYGR 255
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 256 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADTVQQIRDLERGCH- 311
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 312 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ-------DTMP 364
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 365 PKGV------RHTMMFSATFPKEIQMLARDF 389
Score = 127 (49.8 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 412 DAQTVIAFMNNTRQLKDAV--FKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
D+ T++ F+ T++ D++ F + R +HGD + R L +F++G +LV
Sbjct: 434 DSLTLV-FVE-TKKGADSLENFLFQER-YACTSIHGDRSQKDREEALHQFRSGRKPILVA 490
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP+D Y HR S E + + K +
Sbjct: 491 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDL 549
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 257 (95.5 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 72/220 (32%), Positives = 113/220 (51%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q AIP L+N D++ + TGSGKT A+L+P+L + L + + G
Sbjct: 401 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPY--- 457
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
A+I+AP+REL QI E K P + V ++GG +R Q LR IV+ TPG
Sbjct: 458 -AIILAPTRELAQQIEEETIKFGKPLGIRTVA-VIGGISREDQGFRLRMGCE-IVIATPG 514
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV---GRRSGANPREPKSA 309
R+ ++ L C ++VLDE D ++ F + +I+E++ ++ + E
Sbjct: 515 RLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDDAEDPEK 574
Query: 310 LAMRAE------RQTIMVSATVPFSVIRAARSWGHDPLLV 343
+ E RQT+M +AT+P +V R ARS+ P +V
Sbjct: 575 MMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVV 614
Score = 130 (50.8 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 34/126 (26%), Positives = 53/126 (42%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+I F+N + LE G A LHG G+ R L K G +LV +++ R
Sbjct: 654 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 713
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSIC--EEPEVFVVKKMQKQLA 533
G+D+ + +V+N D+ + Y HR ++ E+ VF K Q L
Sbjct: 714 GIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLK-QAILE 772
Query: 534 VPIQAC 539
P+ C
Sbjct: 773 SPVSTC 778
>POMBASE|SPBC24C6.02 [details] [associations]
symbol:SPBC24C6.02 "ATP-dependent RNA helicase Spb4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC24C6.02 GO:GO:0005524 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
OMA:CACVEYW OrthoDB:EOG46MFT3 PIR:T39966 RefSeq:NP_595956.1
ProteinModelPortal:O74764 STRING:O74764 EnsemblFungi:SPBC24C6.02.1
GeneID:2540598 KEGG:spo:SPBC24C6.02 NextBio:20801723 Uniprot:O74764
Length = 606
Score = 257 (95.5 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 77/210 (36%), Positives = 110/210 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T VQ+ AIP LKN D+V+++ TGSGKTLAYLLP KV +D G G
Sbjct: 21 FKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKV-TRRDTDETGLG----- 74
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLG--PSD----KKAVQQL-VGGANRSRQEEA-LRK 241
A+IVAP+REL QI K+LL P KK V + +GG + A R+
Sbjct: 75 ----ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFRE 130
Query: 242 NKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG--RRS 299
P++V+GTPGR+ E+ + + + L+LDE D L+ F+ + I+ + RR+
Sbjct: 131 KNPSVVIGTPGRLNEMLS--HISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRT 188
Query: 300 G---ANPREPKSA-LAMRAERQTIMVSATV 325
G A + S+ L + R ++ VS TV
Sbjct: 189 GLFSATMNDTVSSFLKIAGLRNSVRVSVTV 218
Score = 125 (49.1 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 41/176 (23%), Positives = 79/176 (44%)
Query: 377 AKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK--DAVFKLE 434
+K+ D P +L V +KV + + ++ + I F ++ ++ +++F
Sbjct: 220 SKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTY 279
Query: 435 ARGMKAAELHGDLGKLARSTTLKKFKNGEVR-VLVTNELSARGLDVAECDLVVNLDLPTD 493
+ LHG + RS +KFK + VL T ++++RGLD+ D V+ LD P D
Sbjct: 280 KLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLD 339
Query: 494 SIHYAHRAXXXXXXXXXXXVVSIC-----EE-PEVFVVKKMQ-KQLAVPIQACEFT 542
++HR + + EE E+ V+K+ ++ PI+A + +
Sbjct: 340 PKSFSHRCGRAGRAGRAGVAIVLLNDGREEEYEELLRVRKVPITRIDTPIEALDLS 395
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 202 (76.2 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 58/184 (31%), Positives = 89/184 (48%)
Query: 109 ANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
ANSF F T +Q+ ++P+ILK DV+ Q TGSGKT A+ L +
Sbjct: 3 ANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGV 62
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
LS + K+ ++A+++ P+REL Q+ +I+ L V L G
Sbjct: 63 LSNLNV-------------KRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q +L ++ I+VGTPGRI + + ++ LVLDE D +L F+EA+
Sbjct: 110 GMPMGPQIGSL-EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEAL 168
Query: 289 HRIV 292
I+
Sbjct: 169 EAII 172
Score = 155 (59.6 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 34/121 (28%), Positives = 56/121 (46%)
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N R++++ L G ELHGD+ + R L +F N + +LV +++ARG
Sbjct: 247 VVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARG 306
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
LDV D V N DL D + HR S + E + V ++ + + + I
Sbjct: 307 LDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAI 366
Query: 537 Q 537
+
Sbjct: 367 E 367
Score = 64 (27.6 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 311 AMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
A AERQT++ SAT P S+ + A+S + L+++ +
Sbjct: 174 AAPAERQTLLFSATYPASIEQIAQSVTRNALMIKVE 209
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 208 (78.3 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 65/231 (28%), Positives = 108/231 (46%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q+ AIP+++ DV+ + TG+GKT A+ LPIL ++ GE G+
Sbjct: 21 YETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQ---------QGERGR- 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ A+++AP+REL QI + LG + + GG + Q + L+ +VV
Sbjct: 71 --VRALVIAPTRELAEQI-NDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAE-VVVA 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
PGR+ + A G + LVLDE D++ F + R+++H+ R
Sbjct: 127 CPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMP 186
Query: 310 LAMRAERQTIMVS-ATVPFSVIRAARSWGHD--PLLVQAKNVIPLESMPAT 357
+ +R Q I+V TV + A + H P+ K + LE + T
Sbjct: 187 IDIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPVEQHLKTPLLLELLRHT 237
Score = 173 (66.0 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 38/141 (26%), Positives = 69/141 (48%)
Query: 398 QH-KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
QH K L + D ++V+ F + K +LE G +AA L G+L + R L
Sbjct: 223 QHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAAL 282
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSI 516
F++G ++LV +++ARG+DV++ V+N D+P + Y HR ++
Sbjct: 283 DGFRDGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTL 342
Query: 517 CEEPEVFVVKKMQKQLAVPIQ 537
+ +V+ +++ L PI+
Sbjct: 343 VTSDDGAMVRAIERSLGAPIE 363
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 193 (73.0 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 52/166 (31%), Positives = 85/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ P+ VQS AI I K DV+ Q+ +G+GKT + + IL + D S
Sbjct: 41 YETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSI----DLSVR-------- 88
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
D +A+I++P+REL +QI + + LG +GG + + L + +V G
Sbjct: 89 -DTQALILSPTRELAVQI-QNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQH-VVSG 145
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ L T + L+LDE DELL+ F+E ++ I ++
Sbjct: 146 TPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYL 191
Score = 176 (67.0 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 41/168 (24%), Positives = 75/168 (44%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ LK Y+ V K + K DTL L + F N+ R++ K+
Sbjct: 227 DELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFT 286
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+HG++ + R ++ F+ G RVL+ ++ ARG+DV + LV+N DLP + +Y H
Sbjct: 287 VTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIH 346
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLV 547
R ++ +V +++ +++ + I G +V
Sbjct: 347 RIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394
Score = 48 (22.0 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q ++VSAT+P V+ + +P+ + K + + LE +
Sbjct: 196 QVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGL 234
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 255 (94.8 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 74/211 (35%), Positives = 112/211 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGESGK 188
PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + K+ +G G+
Sbjct: 203 PTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGR 262
Query: 189 KTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPA 245
+ ++++AP+REL +QI E +K S + V V GGA+ +Q L +
Sbjct: 263 RKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVLPCVVYGGADIGQQIRDLERGCH- 318
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
++V TPGR+ ++ GK+ C++LVLDE D +L F + RI+E +
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQ-------DTMP 371
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK R T+M SAT P + AR +
Sbjct: 372 PKGV------RHTMMFSATFPKEIQMLARDF 396
Score = 128 (50.1 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 33/118 (27%), Positives = 56/118 (47%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ D++ L G +HGD + R L +F++G+ +LV
Sbjct: 441 DSLTLV-FVE-TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
++ARGLD++ V+N DLP D Y HR S E + + K +
Sbjct: 499 AVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNINISKDL 556
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 197 (74.4 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 66/218 (30%), Positives = 103/218 (47%)
Query: 81 AKVKAVRSDGIKAAGVKKSLEIESAPFAANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAA 140
++ ++V S G + S E E AP A SF + PT +QS A
Sbjct: 20 SEAESVSSRGSAKDETQTSGE-EPAP--AKSFKELGIIDQLCEACENMGYKAPTPIQSQA 76
Query: 141 IPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPS 200
IP L+ DV+ + TGSGKT A+ LP+L + +T + +++AP+
Sbjct: 77 IPLALEGRDVIGLAETGSGKTAAFALPMLQAL------------MEAPQT-LFGLVLAPT 123
Query: 201 RELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISA 259
REL QI + + L G + +VGG + Q AL K KP I+V TPGR+ + +
Sbjct: 124 RELAYQISQAFETL-GSTIGVRCAVIVGGMDMVAQSIALGK-KPHIIVATPGRLLDHLEN 181
Query: 260 AGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGR 297
++L +DE D LL +F E++ +I+ + R
Sbjct: 182 TKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPR 219
Score = 185 (70.2 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 49/179 (27%), Positives = 81/179 (45%)
Query: 382 QSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAA 441
Q++ Y C+ +HK L ++ Q+ I F + + F L A G A
Sbjct: 255 QTVSTLQSSYICIPH-KHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAI 313
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501
LHG L + AR L KF++ +LV +++ARGLD+ D+V N DLP DS Y HR
Sbjct: 314 PLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRV 373
Query: 502 XXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
+S + +V V +++ L+ + + + +++ E+ EA R
Sbjct: 374 GRTARAGKSGVAISFVTQYDVEVWLRIEHALSKKLPEYQVEKDEVMV--MSERVAEASR 430
>CGD|CAL0000625 [details] [associations]
symbol:SPB4 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K14809 EMBL:AACQ01000202 EMBL:AACQ01000200
RefSeq:XP_711358.1 RefSeq:XP_711406.1 ProteinModelPortal:Q59NP8
STRING:Q59NP8 GeneID:3647008 GeneID:3647042 KEGG:cal:CaO19.11631
KEGG:cal:CaO19.4154 CGD:CAL0005749 Uniprot:Q59NP8
Length = 631
Score = 251 (93.4 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 62/178 (34%), Positives = 105/178 (58%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGP-LKDKSSNGN-GESGKKTD 191
T VQ++ IP + N DVV+++ TGSGKTL++++P+L K+ L S+G+ E K+
Sbjct: 34 TPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPDSDGDLPEPVKRGH 93
Query: 192 IEAVIVAPSRELGMQIVREIKKLLG--PSDKKA---VQQLVGGANRSRQE-EALRKNKPA 245
+ +++++P+REL QI ++L P DK Q LVG R++ N+P
Sbjct: 94 MLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQ 153
Query: 246 IVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG--RRSG 300
I++GTPGRI E + ++ + T ++LDE D+LL F+F + + I++ + RR+G
Sbjct: 154 ILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTG 211
Score = 131 (51.2 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 35/128 (27%), Positives = 63/128 (49%)
Query: 385 PPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK------DAVFKLEARG- 437
P +L+ Y + + K+ TL + + I + +K + V++ E+
Sbjct: 250 PKSLQLSYMMINPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDE 309
Query: 438 -MKAAELHGDLGKLARSTTLKKFKNGEVR----VLVTNELSARGLDVAECDLVVNLDLPT 492
+K LHG L +R TL F G++ +L+T +++ARG+D+ + DLV+ +D PT
Sbjct: 310 PLKFFSLHGQLNTKSRLKTLDNFTQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDPPT 369
Query: 493 DSIHYAHR 500
D + HR
Sbjct: 370 DPNVFLHR 377
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 263 (97.6 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 80/255 (31%), Positives = 126/255 (49%)
Query: 80 KAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFXXXXXXXXXXXXXXXXXFNVPTEVQSA 139
+AK +++ S G+ A ++ + + A +A + F+ PT VQ +
Sbjct: 170 QAKDRSITS-GLSFAALEDEADDDGADISA--WEPLGLSPETLTSLSKLKFSTPTSVQKS 226
Query: 140 AIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199
IP IL HDV+ ++ TGSGKTLA+ LPIL + + + + E +K I A+I++P
Sbjct: 227 CIPPILDGHDVIGKASTGSGKTLAFGLPILEHYLERERRKTIDSEEEKEKIPI-ALILSP 285
Query: 200 SRELGMQIVREIKKLLG--PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEI 257
+REL Q+ + I L+ P L GG + +Q+ L IV+GTPGR+ E+
Sbjct: 286 TRELAHQLQKHIYGLISNAPGVNARTALLTGGLSVQKQQRLLETAD--IVIGTPGRVWEV 343
Query: 258 SAAGK---LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGR-RSGANPREPKSA---- 309
G+ G +FLV+DE D LLS + + I+ + R G P E +
Sbjct: 344 LRTGQGLIRRMQGIKFLVIDEADRLLSEGHFKEVEDILSSLDRVEDGGPPDEEDDSSEEN 403
Query: 310 LAMRAERQTIMVSAT 324
+ ERQT++ SAT
Sbjct: 404 VVPGVERQTLVFSAT 418
Score = 120 (47.3 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 36/155 (23%), Positives = 71/155 (45%)
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR---VLVTNELS 473
+ F N+ ++ L+ + A LH + + AR ++++F + +LV +++
Sbjct: 503 LVFTNSISAVRRITQLLQTLQLPALALHSSMAQKARLRSVERFSSSTANPGTILVATDVA 562
Query: 474 ARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPE-VFVVK---KMQ 529
ARGLD+ D V++ P + Y HR+ V IC E V VV+ K+
Sbjct: 563 ARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASGKSVIICSPEEMVGVVRLAAKVH 622
Query: 530 KQLA----VPIQACEFTEGRLVIGKEEEKTLEAVR 560
+A +P+++ E R ++ + ++ + A R
Sbjct: 623 ANMANGKKLPLESLELD--RRIVSRVRQRVVLAAR 655
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 207 (77.9 bits), Expect = 2.7e-27, Sum P(3) = 2.7e-27
Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
T +Q+ +P +LK DV+ ++ TGSGKT A+ L +L+K+ KK I+
Sbjct: 34 TPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNKL-------------EVKKFRIQ 80
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
++++ P+REL Q+ +E++KL + L GG Q +L ++ ++VGTPGR
Sbjct: 81 SMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSL-EHGAHVIVGTPGR 139
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+ E G L LVLDE D +L F+ A+ IV
Sbjct: 140 LEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIV 178
Score = 159 (61.0 bits), Expect = 2.7e-27, Sum P(3) = 2.7e-27
Identities = 42/160 (26%), Positives = 68/160 (42%)
Query: 377 AKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR 436
A DQS + ++ V ++D LR + ++ F N ++ + L
Sbjct: 215 ASSEDQST--ISQKFFKVGNDDDRLDALRLLLLGNQVESTAIFCNTKKETQQVADALHFD 272
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
G LHGDL + R TL +F N +LV +++ARGLD+ DLV+N + DS
Sbjct: 273 GFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEV 332
Query: 497 YAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
+ HR S+ + E + V ++ L I
Sbjct: 333 HVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDYLEAVI 372
Score = 52 (23.4 bits), Expect = 2.7e-27, Sum P(3) = 2.7e-27
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+RQT++ SAT P + + S DP++V+
Sbjct: 184 DRQTLLFSATFPDQIKSISESIMTDPVMVK 213
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 207 (77.9 bits), Expect = 2.7e-27, Sum P(3) = 2.7e-27
Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
T +Q+ +P +LK DV+ ++ TGSGKT A+ L +L+K+ KK I+
Sbjct: 34 TPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNKL-------------EVKKFRIQ 80
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
++++ P+REL Q+ +E++KL + L GG Q +L ++ ++VGTPGR
Sbjct: 81 SMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSL-EHGAHVIVGTPGR 139
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+ E G L LVLDE D +L F+ A+ IV
Sbjct: 140 LEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIV 178
Score = 159 (61.0 bits), Expect = 2.7e-27, Sum P(3) = 2.7e-27
Identities = 42/160 (26%), Positives = 68/160 (42%)
Query: 377 AKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR 436
A DQS + ++ V ++D LR + ++ F N ++ + L
Sbjct: 215 ASSEDQST--ISQKFFKVGNDDDRLDALRLLLLGNQVESTAIFCNTKKETQQVADALHFD 272
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
G LHGDL + R TL +F N +LV +++ARGLD+ DLV+N + DS
Sbjct: 273 GFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEV 332
Query: 497 YAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
+ HR S+ + E + V ++ L I
Sbjct: 333 HVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDYLEAVI 372
Score = 52 (23.4 bits), Expect = 2.7e-27, Sum P(3) = 2.7e-27
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+RQT++ SAT P + + S DP++V+
Sbjct: 184 DRQTLLFSATFPDQIKSISESIMTDPVMVK 213
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 220 (82.5 bits), Expect = 2.8e-27, Sum P(3) = 2.8e-27
Identities = 70/199 (35%), Positives = 92/199 (46%)
Query: 87 RSDGIKAAGVKKSLEIESAPFAANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAAIPSILK 146
R D +K +LEI NSF PT +Q A IP ILK
Sbjct: 73 RKDDENPVLIKDALEI-GLNAEENSFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILK 131
Query: 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206
D + S TGSGKT+A+ +PIL K +D I AVI+ P+REL +Q
Sbjct: 132 GRDCIGGSRTGSGKTIAFSVPILQKWA--EDPFG-----------IFAVILTPTRELALQ 178
Query: 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHT 265
I +IK + P K V L+ G R + +P +VV TPGR+A+ I+ +G
Sbjct: 179 IFEQIKAISAPQSMKPV--LITGGTDMRSQAIELAGRPHVVVATPGRLADHINTSGTDTV 236
Query: 266 HGC---RFLVLDEIDELLS 281
G R +VLDE D LLS
Sbjct: 237 AGLKRVRMVVLDEADRLLS 255
Score = 159 (61.0 bits), Expect = 2.8e-27, Sum P(3) = 2.8e-27
Identities = 39/156 (25%), Positives = 73/156 (46%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALD--AQTVIAFMNNTRQLKDAVFKLEAR 436
+A ++PP L+ Y L H+ L + ++ I F N T+ L +
Sbjct: 314 EAKDTVPPTLRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSL 373
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
G + LH L + R++ L +F+ RVLV ++++RGLD+ LVVN ++P +
Sbjct: 374 GHRVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDD 433
Query: 497 YAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQL 532
Y HR V++ + +V +V +++++
Sbjct: 434 YVHRVGRTARAGRTGEAVTLVGQRDVQLVLAIEERI 469
Score = 64 (27.6 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 153 QSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205
+S T S LP LS++ K KSS+ N S +K D V++ + E+G+
Sbjct: 41 ESSTDSYTAAPAPLPSLSRI---KKKSSSTNATSSRKDDENPVLIKDALEIGL 90
Score = 40 (19.1 bits), Expect = 2.8e-27, Sum P(3) = 2.8e-27
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 540 EFTEGRLVIGKEEEKTLEAVR 560
E EGR V+G++ K L+ VR
Sbjct: 506 EIDEGRDVLGRKRNK-LKKVR 525
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 250 (93.1 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 75/214 (35%), Positives = 113/214 (52%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GP---LKDKSSNGNGES 186
PT VQ AIP I D++ + TGSGKT A+LLP+LS++ GP L+ ++ E+
Sbjct: 246 PTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALQATKASTQQEN 305
Query: 187 GK----KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKN 242
GK K ++++AP+REL +QI E +K S + + GGA+ +Q L +
Sbjct: 306 GKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCV-VYGGADIGQQIRDLERG 364
Query: 243 KPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGAN 302
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE +
Sbjct: 365 CH-LLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQ-------D 416
Query: 303 PREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
PK + RQT+M SAT P + AR +
Sbjct: 417 TMPPKGS------RQTMMFSATFPKEIQILARDF 444
Score = 132 (51.5 bits), Expect = 3.1e-27, Sum P(2) = 3.1e-27
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D+ T++ F+ T++ DA+ L G +HGD + R L +F++G ++V
Sbjct: 489 DSLTLV-FVE-TKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVAT 546
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
++ARGLD++ V+N DLP+D Y HR
Sbjct: 547 AVAARGLDISNVKHVINFDLPSDIEEYVHR 576
Score = 37 (18.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186
++ + YT Y +PI+ L + G+G++
Sbjct: 237 NITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKT 274
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 208 (78.3 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 50/166 (30%), Positives = 88/166 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP +L D++ + TG+GKT +++LP+L ++ G K+
Sbjct: 21 YTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLN--SQYKETGKKLRAKR 78
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
I A+I+ P+REL +Q+ I + D ++ + GG + Q++ L I+V
Sbjct: 79 --IRALILVPTRELAVQVEASISQYAKYLDISSMA-MYGGVDAQEQKQRLIWGVD-ILVA 134
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ +++ LH LVLDE D +L F + +++I+E +
Sbjct: 135 TPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180
Score = 167 (63.8 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 41/164 (25%), Positives = 71/164 (43%)
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
AD++ P ++ + +K L + + Q + F+ V +LE RG+
Sbjct: 215 ADKASKPKIEQWLVTVDKANKSALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIV 274
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
A +H + R L FK+G+++ LV ++ARGLD+ E V+N DLP Y H
Sbjct: 275 AESIHSGRAQDIREKILNDFKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIH 334
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTE 543
R +S+ + + ++ +L I+ EF E
Sbjct: 335 RIGRTGRAGASGEAISLVSKDNFRELCAIESRLGHIIERKEFEE 378
Score = 37 (18.1 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 257 ISAAGKL--HTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRA 314
++ G+L TH R L DE+D L+ EA R+++ +G N K +
Sbjct: 133 VATPGRLLDMTHQ-RVLHFDELDMLV---LDEA-DRMLD-MGFIDDIN----KIIERLPE 182
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPL 341
RQ ++ SAT+ V A+ H P+
Sbjct: 183 HRQNLLFSATMSEEVRGLAKRTIHKPV 209
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 189 (71.6 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 53/168 (31%), Positives = 85/168 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 104
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPAIV 247
+ +A+I+AP+REL +QI K LL D VQ +GG N L + +V
Sbjct: 105 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VV 160
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 161 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 208
Score = 174 (66.3 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 37/157 (23%), Positives = 76/157 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K+
Sbjct: 244 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 303
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L++N DLP + Y H
Sbjct: 304 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ + ++ +++ +++ + I
Sbjct: 364 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 400
Score = 53 (23.7 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +++SAT+P ++ + DP+ + K + + LE +
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI 251
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 189 (71.6 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 53/168 (31%), Positives = 85/168 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 104
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPAIV 247
+ +A+I+AP+REL +QI K LL D VQ +GG N L + +V
Sbjct: 105 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VV 160
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 161 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 208
Score = 174 (66.3 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 37/157 (23%), Positives = 76/157 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K+
Sbjct: 244 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 303
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L++N DLP + Y H
Sbjct: 304 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ + ++ +++ +++ + I
Sbjct: 364 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 400
Score = 53 (23.7 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +++SAT+P ++ + DP+ + K + + LE +
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI 251
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 189 (71.6 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 53/168 (31%), Positives = 85/168 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 104
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPAIV 247
+ +A+I+AP+REL +QI K LL D VQ +GG N L + +V
Sbjct: 105 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VV 160
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 161 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 208
Score = 174 (66.3 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 37/157 (23%), Positives = 76/157 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K+
Sbjct: 244 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 303
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L++N DLP + Y H
Sbjct: 304 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ + ++ +++ +++ + I
Sbjct: 364 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 400
Score = 53 (23.7 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +++SAT+P ++ + DP+ + K + + LE +
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI 251
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 189 (71.6 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 53/168 (31%), Positives = 85/168 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 104
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPAIV 247
+ +A+I+AP+REL +QI K LL D VQ +GG N L + +V
Sbjct: 105 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VV 160
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 161 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 208
Score = 174 (66.3 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 37/157 (23%), Positives = 76/157 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K+
Sbjct: 244 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 303
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L++N DLP + Y H
Sbjct: 304 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ + ++ +++ +++ + I
Sbjct: 364 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 400
Score = 53 (23.7 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +++SAT+P ++ + DP+ + K + + LE +
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI 251
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 189 (71.6 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 53/168 (31%), Positives = 85/168 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 104
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPAIV 247
+ +A+I+AP+REL +QI K LL D VQ +GG N L + +V
Sbjct: 105 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VV 160
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 161 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 208
Score = 174 (66.3 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 37/157 (23%), Positives = 76/157 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K+
Sbjct: 244 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 303
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L++N DLP + Y H
Sbjct: 304 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 363
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ + ++ +++ +++ + I
Sbjct: 364 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 400
Score = 53 (23.7 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +++SAT+P ++ + DP+ + K + + LE +
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI 251
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 189 (71.6 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 53/168 (31%), Positives = 85/168 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 59 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 105
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPAIV 247
+ +A+I+AP+REL +QI K LL D VQ +GG N L + +V
Sbjct: 106 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VV 161
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 162 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 209
Score = 174 (66.3 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 37/157 (23%), Positives = 76/157 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K+
Sbjct: 245 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 304
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L++N DLP + Y H
Sbjct: 305 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 364
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ + ++ +++ +++ + I
Sbjct: 365 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 401
Score = 53 (23.7 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +++SAT+P ++ + DP+ + K + + LE +
Sbjct: 214 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI 252
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 208 (78.3 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 56/169 (33%), Positives = 83/169 (49%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ AIP+IL D++ S TGSGKT A+ LP+L + + K
Sbjct: 39 PTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKP-- 96
Query: 193 EAVIVAPSRELGMQIVREIKKL---LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++ P+REL +Q+ + L L S +Q L GG +Q L KP +VV
Sbjct: 97 LALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSA-KPQLVVA 155
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
TPGR+ ++ + + LVLDE D LL F M +++ + +R
Sbjct: 156 TPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPKR 204
Score = 169 (64.5 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 48/146 (32%), Positives = 73/146 (50%)
Query: 416 VIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
V+ F++ R DA+ K L G+ AA LHG+ + RS TL FK ++VLV +L A
Sbjct: 273 VLVFIS-ARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMA 331
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVS-IC--EEPEVFVVKKMQKQ 531
RG+ V +V+NLDLPT + Y HR +S +C E P + ++ + +
Sbjct: 332 RGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTAR 391
Query: 532 LAVPIQACEFTEGRLVIGKEEEKTLE 557
A+P+ F V K EK ++
Sbjct: 392 -ALPLV---FLADFPVTDKPSEKIID 413
Score = 56 (24.8 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 289 HRIVEHVGR--RSGANPREPKSALAMRAERQTIMVSATVPFSVIR-AARSWGHDPLLVQA 345
H +++ R G P K M +QT++ SAT+P ++ A + +DPL V+A
Sbjct: 176 HLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEA 235
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 208 (78.3 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 56/169 (33%), Positives = 83/169 (49%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ AIP+IL D++ S TGSGKT A+ LP+L + + K
Sbjct: 39 PTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKP-- 96
Query: 193 EAVIVAPSRELGMQIVREIKKL---LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++ P+REL +Q+ + L L S +Q L GG +Q L KP +VV
Sbjct: 97 LALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSA-KPQLVVA 155
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
TPGR+ ++ + + LVLDE D LL F M +++ + +R
Sbjct: 156 TPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPKR 204
Score = 169 (64.5 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 48/146 (32%), Positives = 73/146 (50%)
Query: 416 VIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
V+ F++ R DA+ K L G+ AA LHG+ + RS TL FK ++VLV +L A
Sbjct: 273 VLVFIS-ARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMA 331
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVS-IC--EEPEVFVVKKMQKQ 531
RG+ V +V+NLDLPT + Y HR +S +C E P + ++ + +
Sbjct: 332 RGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLTAR 391
Query: 532 LAVPIQACEFTEGRLVIGKEEEKTLE 557
A+P+ F V K EK ++
Sbjct: 392 -ALPLV---FLADFPVTDKPSEKIID 413
Score = 56 (24.8 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 289 HRIVEHVGR--RSGANPREPKSALAMRAERQTIMVSATVPFSVIR-AARSWGHDPLLVQA 345
H +++ R G P K M +QT++ SAT+P ++ A + +DPL V+A
Sbjct: 176 HLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEA 235
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 253 (94.1 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 71/219 (32%), Positives = 115/219 (52%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q AIP L+N DV+ + TGSGKT A+LLP+L + L + + G
Sbjct: 324 PTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPY--- 380
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
A+I+AP+REL QI E K K V ++GGA+R Q LR +V+ TPG
Sbjct: 381 -AIIMAPTRELAQQIEEETNKFGKLLGIKTVS-VIGGASREDQGMKLRMGVE-VVIATPG 437
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV---GRRSGANPREPKSA 309
R+ ++ L + C +++LDE D +L F + +++E++ + + + + A
Sbjct: 438 RLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEA 497
Query: 310 L----AMRAE-RQTIMVSATVPFSVIRAARSWGHDPLLV 343
L + R + RQT+M +AT+ ++ R AR + P +V
Sbjct: 498 LMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVV 536
Score = 128 (50.1 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 38/141 (26%), Positives = 63/141 (44%)
Query: 405 RRCVHALDAQ---TVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFK 460
++ V L++Q +I F+N + D + K L G K LHG G+ R L+ K
Sbjct: 562 KKLVEVLESQFQPPIIIFVNQKKGA-DMLSKGLTKLGFKPTVLHGGKGQDQREYALQALK 620
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEP 520
G +LV +++ RG+DV + LV+N D+ Y HR ++
Sbjct: 621 EGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPD 680
Query: 521 EVFVVKKMQKQLAV--PIQAC 539
+ V + KQ+ V P+ +C
Sbjct: 681 DTAVYFDL-KQVLVESPVSSC 700
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 225 (84.3 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 56/166 (33%), Positives = 97/166 (58%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD- 191
P+++Q+ A+P L+ DV+ + TGSGKT A+ +PIL L + + + G++ D
Sbjct: 32 PSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA---LLEYVYDSEPKKGRRPDP 88
Query: 192 -IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGT 250
A +++P+REL +QI + + L G LVGG +R +Q AL K +P ++V T
Sbjct: 89 AFFACVLSPTRELAIQIAEQFEAL-GADISLRCAVLVGGIDRMQQTIALGK-RPHVIVAT 146
Query: 251 PGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
PGR+ + +S ++LVLDE D LL+ +F +++++I+E +
Sbjct: 147 PGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEI 192
Score = 150 (57.9 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 36/135 (26%), Positives = 61/135 (45%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
LK Y ++K L + + T + F + L + G +A + G +
Sbjct: 235 LKQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQM 294
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
+ R L KFK GE +LV ++++RGLD+ D+V+N D+PT+S Y HR
Sbjct: 295 TQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARA 354
Query: 508 XXXXXVVSICEEPEV 522
+S+ + E+
Sbjct: 355 GRSGVGISLVNQYEL 369
Score = 51 (23.0 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 21/105 (20%), Positives = 48/105 (45%)
Query: 245 AIVVGTPGRIAEISAAGKL-HTH-GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGAN 302
A++VG R+ + A GK H + D + + F+ + + +++ R +
Sbjct: 121 AVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNED 180
Query: 303 PREPKSALA--MRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ + + + ER+T + SAT+ V + R+ +P+ ++A
Sbjct: 181 FEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEA 225
>SGD|S000001894 [details] [associations]
symbol:SPB4 "Putative ATP-dependent RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA;IPI] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000470 "maturation of LSU-rRNA" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001894
GO:GO:0005524 GO:GO:0005730 EMBL:D50617 EMBL:BK006940 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030686
GO:GO:0006364 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 GeneTree:ENSGT00550000074969
OMA:MDSSANI OrthoDB:EOG46MFT3 EMBL:X16147 PIR:S14942
RefSeq:NP_116654.1 ProteinModelPortal:P25808 SMR:P25808
DIP:DIP-5423N IntAct:P25808 MINT:MINT-525740 STRING:P25808
PaxDb:P25808 EnsemblFungi:YFL002C GeneID:850549 KEGG:sce:YFL002C
CYGD:YFL002c NextBio:966324 Genevestigator:P25808
GermOnline:YFL002C Uniprot:P25808
Length = 606
Score = 257 (95.5 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 65/188 (34%), Positives = 104/188 (55%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T VQ++ IP + N DVV+ S TGSGKT A+++P+L KV +K+++ N KK
Sbjct: 27 FETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKV--VKEEA---NTSKFKK 81
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLG--PSDKKAVQ-QLVGGANRSRQEEALR---KNK 243
++I+AP+REL QI + L PSD ++ QL+ G N + + + +N+
Sbjct: 82 AHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNR 141
Query: 244 PAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG--RRSGA 301
P I++GTPGR+ + + T C +V+DE D LL +F + +I+ + RR+G
Sbjct: 142 PQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGL 201
Query: 302 NPREPKSA 309
+SA
Sbjct: 202 FSATMRSA 209
Score = 120 (47.3 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 38/126 (30%), Positives = 61/126 (48%)
Query: 385 PPALKHYYCVT----KLQHKVDTL-----RRCVHALDAQTVIAFMNNTRQLKDAVFKLEA 435
P +LK YCV KLQ V L ++C+ +++ + Q +
Sbjct: 233 PSSLKLNYCVVNPAEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKR-NILV 291
Query: 436 RGMKAAELHGDLGKLARSTTLKKFKNG-EVRVLVTNELSARGLDVAECDLVVNLDLPTDS 494
++ LHG L AR+ TL F + VL T +++ARG+D+ + DLV+ LD PT++
Sbjct: 292 NEVEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNT 351
Query: 495 IHYAHR 500
+ HR
Sbjct: 352 DMFMHR 357
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 203 (76.5 bits), Expect = 5.3e-27, Sum P(2) = 5.3e-27
Identities = 62/207 (29%), Positives = 102/207 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q AIP +L DV+ + TGSGKT A+ LP++ ++ N S
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELW---------NNPS--- 113
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
AV++AP+REL QI + + + G ++V +VGG + Q AL K KP ++V
Sbjct: 114 -PFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVV-IVGGMDMVTQAVALSK-KPHVLVC 170
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG--RRS---GANP 303
TPGR+ + + ++L++DE D LL +F + +I++ + RR+ A
Sbjct: 171 TPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATM 230
Query: 304 REPKSALAMRAERQTIMVSATVPFSVI 330
L + Q + V+ + FS +
Sbjct: 231 TSKVEKLQRASLHQPVRVAVSSKFSTV 257
Score = 174 (66.3 bits), Expect = 5.3e-27, Sum P(2) = 5.3e-27
Identities = 46/170 (27%), Positives = 75/170 (44%)
Query: 392 YCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
Y +HK L V+ L ++I F + L G A LHG L +
Sbjct: 264 YLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSN 323
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXX 511
R L KFK+G LV +++ARGLD+ D+V+N D+PTDS Y HR
Sbjct: 324 RLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAG 383
Query: 512 XVVSICEEPEVFVVKKMQKQLAVPIQACEFT-EGRLVIGKEE-EKTLEAV 559
+++ + ++ +++ + +Q E EG ++ + E EA+
Sbjct: 384 KSIALVTQYDLEPFLRIEATIGKKMQEYEIDKEGVFLLSERVGEAQREAI 433
Score = 64 (27.6 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 26/118 (22%), Positives = 54/118 (45%)
Query: 233 SRQEEALRKN---KPAIVVGTPGRIAE-ISAAGKLHTHGCR-FLVLDEIDELLSFNFREA 287
S Q EA+ + + ++VG + + ++ + K H C ++D ++ F+ +
Sbjct: 131 SEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNL 190
Query: 288 MHRIVEHVGRRSGAN--PREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
+ I++ R + P K + ER+T++ SAT+ V + R+ H P+ V
Sbjct: 191 KYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRV 248
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 226 (84.6 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
Identities = 59/167 (35%), Positives = 91/167 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q+ IP ILK D++ + TGSGKT ++ +PIL+++ S + G
Sbjct: 24 FKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQL------SEDPYG----- 72
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ AVI+ P+REL +QI + + P + ++GG + Q L K +P I+V
Sbjct: 73 --VFAVILTPTRELAVQIGEQFNAIGAPMNVNC-SVVIGGIDNVTQALILDK-RPHIIVA 128
Query: 250 TPGRIAEISAAG-KLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+A G K+ C+FLVLDE D LL +F + I+EH+
Sbjct: 129 TPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHL 175
Score = 150 (57.9 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + I F+NN ++ L + + LH L + +R LK FK+G+V+VLV +
Sbjct: 244 EGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATD 303
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQK 530
+++RGLD+ + +V+N L S Y HR +S +V ++K +++
Sbjct: 304 VASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEE 362
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 204 (76.9 bits), Expect = 5.7e-27, Sum P(3) = 5.7e-27
Identities = 54/162 (33%), Positives = 82/162 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ P+ +Q +IP IL HD++ Q+ TG+GKT A+ LPIL ++ P K
Sbjct: 26 YEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDP-------------SK 72
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +A+I+AP+REL +Q+ + V + GGA Q +A+R N IVV
Sbjct: 73 REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR-NGAQIVVA 131
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ + + LVLDE DE+L F + + I
Sbjct: 132 TPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVI 173
Score = 161 (61.7 bits), Expect = 5.7e-27, Sum P(3) = 5.7e-27
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 387 ALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
A++ + + K + + D +I F+ + D LEA+G KAA L+GD
Sbjct: 219 AIEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGD 278
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R + K+G + ++V +++ARGLDV V N+D+P D Y HR
Sbjct: 279 IAQNQRERVIDSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHR 332
Score = 55 (24.4 bits), Expect = 5.7e-27, Sum P(3) = 5.7e-27
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 311 AMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAK 346
AM RQT++ SAT+P S+ A DP + +Q+K
Sbjct: 176 AMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSK 213
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 193 (73.0 bits), Expect = 7.0e-27, Sum P(3) = 7.0e-27
Identities = 49/166 (29%), Positives = 85/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP+IL DV+ + TG+GKT A+ LPIL + + D S+ ++
Sbjct: 21 YQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL--MADNQSDHAAKA--- 75
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
I A+++ P+REL +Q+ + K +D + V GG + Q+ +++
Sbjct: 76 --IRALVLVPTRELALQVQQSFVKYAKGTDIR-VGIAYGGVSIEAQQAVFNAGID-VLIA 131
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + G L+ + LV DE D +L F + + +++ V
Sbjct: 132 TPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQV 177
Score = 169 (64.5 bits), Expect = 7.0e-27, Sum P(3) = 7.0e-27
Identities = 36/133 (27%), Positives = 67/133 (50%)
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
K + + V + + Q V+ F + + +L G+ HGDL + AR L++F
Sbjct: 232 KTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEF 291
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEE 519
K G V+VLV +++ARGLD+AE V+N +LP + Y HR +++ +
Sbjct: 292 KQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 351
Query: 520 PEVFVVKKMQKQL 532
+ ++++++ L
Sbjct: 352 EDALLLEEVETLL 364
Score = 50 (22.7 bits), Expect = 7.0e-27, Sum P(3) = 7.0e-27
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
A+RQT++ SAT+ S+ +++ DP ++
Sbjct: 179 AQRQTLLFSATLDDSIFSFSKNLLRDPKRIE 209
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 193 (73.0 bits), Expect = 7.0e-27, Sum P(3) = 7.0e-27
Identities = 49/166 (29%), Positives = 85/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP+IL DV+ + TG+GKT A+ LPIL + + D S+ ++
Sbjct: 21 YQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL--MADNQSDHAAKA--- 75
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
I A+++ P+REL +Q+ + K +D + V GG + Q+ +++
Sbjct: 76 --IRALVLVPTRELALQVQQSFVKYAKGTDIR-VGIAYGGVSIEAQQAVFNAGID-VLIA 131
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + G L+ + LV DE D +L F + + +++ V
Sbjct: 132 TPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQV 177
Score = 169 (64.5 bits), Expect = 7.0e-27, Sum P(3) = 7.0e-27
Identities = 36/133 (27%), Positives = 67/133 (50%)
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
K + + V + + Q V+ F + + +L G+ HGDL + AR L++F
Sbjct: 232 KTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEF 291
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEE 519
K G V+VLV +++ARGLD+AE V+N +LP + Y HR +++ +
Sbjct: 292 KQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 351
Query: 520 PEVFVVKKMQKQL 532
+ ++++++ L
Sbjct: 352 EDALLLEEVETLL 364
Score = 50 (22.7 bits), Expect = 7.0e-27, Sum P(3) = 7.0e-27
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
A+RQT++ SAT+ S+ +++ DP ++
Sbjct: 179 AQRQTLLFSATLDDSIFSFSKNLLRDPKRIE 209
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 200 (75.5 bits), Expect = 7.2e-27, Sum P(3) = 7.2e-27
Identities = 49/167 (29%), Positives = 86/167 (51%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ+A IP++L DV+ + TGSGKT A+ LP+L ++ K + +G +
Sbjct: 32 PTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKS----AGV---V 84
Query: 193 EAVIVAPSRELGMQIVREIKKLLGP-SDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251
+++ P+REL Q+ + + + GG + + Q ++LR ++V TP
Sbjct: 85 RCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGAD-VLVATP 143
Query: 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
GR+ ++ A+ L VLDE D +LS F E + +++ + R+
Sbjct: 144 GRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQ 190
Score = 165 (63.1 bits), Expect = 7.2e-27, Sum P(3) = 7.2e-27
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 432 KLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP 491
KL RG+ A HGD + AR+ L FKNGE+ VL+ +++ARG+D+ + +V+N DLP
Sbjct: 272 KLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLP 331
Query: 492 TDSIHYAHRAXXXXXXXXXXXVVSIC--EEPEVF-VVKKMQK 530
Y HR V++ EE F V++K K
Sbjct: 332 RSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNK 373
Score = 47 (21.6 bits), Expect = 7.2e-27, Sum P(3) = 7.2e-27
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 311 AMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
A+ ++QT++ SAT P V H PL
Sbjct: 186 ALPRQKQTLLFSATFPEEVRALTTKLLHQPL 216
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 200 (75.5 bits), Expect = 7.2e-27, Sum P(3) = 7.2e-27
Identities = 49/167 (29%), Positives = 86/167 (51%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ+A IP++L DV+ + TGSGKT A+ LP+L ++ K + +G +
Sbjct: 32 PTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKS----AGV---V 84
Query: 193 EAVIVAPSRELGMQIVREIKKLLGP-SDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251
+++ P+REL Q+ + + + GG + + Q ++LR ++V TP
Sbjct: 85 RCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGAD-VLVATP 143
Query: 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
GR+ ++ A+ L VLDE D +LS F E + +++ + R+
Sbjct: 144 GRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQ 190
Score = 165 (63.1 bits), Expect = 7.2e-27, Sum P(3) = 7.2e-27
Identities = 37/102 (36%), Positives = 54/102 (52%)
Query: 432 KLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP 491
KL RG+ A HGD + AR+ L FKNGE+ VL+ +++ARG+D+ + +V+N DLP
Sbjct: 272 KLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLP 331
Query: 492 TDSIHYAHRAXXXXXXXXXXXVVSIC--EEPEVF-VVKKMQK 530
Y HR V++ EE F V++K K
Sbjct: 332 RSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNK 373
Score = 47 (21.6 bits), Expect = 7.2e-27, Sum P(3) = 7.2e-27
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 311 AMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
A+ ++QT++ SAT P V H PL
Sbjct: 186 ALPRQKQTLLFSATFPEEVRALTTKLLHQPL 216
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 239 (89.2 bits), Expect = 7.3e-27, Sum P(2) = 7.3e-27
Identities = 69/216 (31%), Positives = 110/216 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ P+ +Q AAIP L+ DV+ + TGSGKT A++LP+L+ + L S E
Sbjct: 333 YKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPY- 391
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVV 248
AV++AP+REL QI E K + V +VGG +S +E+ L+ + IV+
Sbjct: 392 ----AVVMAPTRELAQQIEEETVKFAHYLGFR-VTSIVGG--QSIEEQGLKITQGCEIVI 444
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGR+ + + C ++VLDE D ++ F + +++ + S P +
Sbjct: 445 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPS-SNLKPENEEE 503
Query: 309 AL-AMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
L + R T M SAT+P V R AR + +P++V
Sbjct: 504 ELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVV 539
Score = 141 (54.7 bits), Expect = 7.3e-27, Sum P(2) = 7.3e-27
Identities = 44/168 (26%), Positives = 73/168 (43%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGD 446
+ + + K K L++ + L +T I F+N T++ D++ K L+ G + LHG
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVN-TKKNCDSIAKNLDKAGYRVTTLHGG 609
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXX 506
+ R +L+ F+ VLV ++ RG+D+ + V+N D+P Y HR
Sbjct: 610 KSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGR 669
Query: 507 XXXXXXVVSIC--EEPEVFV-VKKM--QKQLAVPIQACEFTEGRLVIG 549
S + EVF +K+M Q AVP + R G
Sbjct: 670 AGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPG 717
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 245 (91.3 bits), Expect = 9.8e-27, Sum P(2) = 9.8e-27
Identities = 73/222 (32%), Positives = 105/222 (47%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS---KVGPLKDKSSNGNGES 186
F PT VQ ++P + D++ + TGSGKT +L P+LS K GP S G+
Sbjct: 162 FTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQ 221
Query: 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAI 246
+K AVI+AP+REL QI E KK S KA + GG+ Q + + +
Sbjct: 222 -RKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACV-VYGGSPIGNQLREIERGCD-L 278
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREP 306
+V TPGR+ ++ GK+ ++LVLDE D +L F + IVE
Sbjct: 279 LVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCD---------- 328
Query: 307 KSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+ ERQT+M SAT P + AR + D + + V
Sbjct: 329 ---MTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRV 367
Score = 130 (50.8 bits), Expect = 9.8e-27, Sum P(2) = 9.8e-27
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D T+I F+ R L + +A +HGD + R L F++G +LV
Sbjct: 399 DGLTLI-FVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATA 457
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHR 500
++ARGLD+ V+N DLP+D Y HR
Sbjct: 458 VAARGLDIPNVTHVINYDLPSDVDDYVHR 486
Score = 40 (19.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
TE S + +L + + + +T Y +PI++ L + G+G++G
Sbjct: 142 TEFTSPPLDGLLLEN-IKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTG 194
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 256 (95.2 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 69/223 (30%), Positives = 122/223 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ P+ +Q AAIP +L+ D++ + TGSGKT A+++P++ + L + ES
Sbjct: 269 YKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLT-----ESNMH 323
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVV 248
AV++AP+REL QI E K P + V +VGG + +E++ + ++ A IVV
Sbjct: 324 LGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVS-VVGG--HAFEEQSFQMSQGAHIVV 380
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK- 307
TPGR+ + C ++V+DE D +L F + +++I+ + S A+ ++
Sbjct: 381 ATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPS-SNASEKDGSI 439
Query: 308 --SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+A + + RQTIM SAT+P V A+S+ +P+++ N+
Sbjct: 440 LATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
Score = 119 (46.9 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+I F+N R ++ +L A G A LHG + R +++ +N +LV +++ R
Sbjct: 519 IIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGR 578
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHR 500
G+D+ LV+N ++ Y HR
Sbjct: 579 GIDIPNVSLVLNYNMAKSIEDYTHR 603
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 181 (68.8 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 57/209 (27%), Positives = 93/209 (44%)
Query: 88 SDGI-KAAGVKKSLEIESAPFAANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAAIPSILK 146
+DGI + A K A +F + P+ VQS AI I K
Sbjct: 2 ADGIDRRADDKMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICK 61
Query: 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206
D + Q+ +G+GKT + + L + + ++T +A++++P+REL Q
Sbjct: 62 GRDTIAQAQSGTGKTATFSISALQVIDTVV-----------RET--QALVLSPTRELATQ 108
Query: 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266
I + + LG +GG N L + +V GTPGR+A++ L T
Sbjct: 109 I-QSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQH-VVSGTPGRVADMIRRRHLRTR 166
Query: 267 GCRFLVLDEIDELLSFNFREAMHRIVEHV 295
+ LVLDE DELL+ FRE ++ + ++
Sbjct: 167 HIKMLVLDEADELLNRGFREQIYDVYRYL 195
Score = 175 (66.7 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 38/150 (25%), Positives = 72/150 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K Y+ V K + K DTL L + F N R++ K+
Sbjct: 231 DELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFT 290
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HG++ + R + ++ F+ G RVL++ ++ ARG+DV + LV+N DLPT+ +Y H
Sbjct: 291 VSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIH 350
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQ 529
R ++ +V +++ ++
Sbjct: 351 RIGRSGRFGRKGVAINFVTSDDVRILRDIE 380
Score = 55 (24.4 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q ++VSAT+P+ V+ + DP+ V K + + LE +
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGI 238
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 185 (70.2 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 53/168 (31%), Positives = 84/168 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 53 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDI-------------QV 99
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPAIV 247
+ +A+I+AP+REL QI K LL D VQ +GG N L + +V
Sbjct: 100 RETQALILAPTRELAGQIQ---KVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH-VV 155
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 156 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 203
Score = 176 (67.0 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 37/157 (23%), Positives = 77/157 (49%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K+
Sbjct: 239 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 298
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R + +K+F++G RVL++ ++ ARGLDV++ L++N DLP + Y H
Sbjct: 299 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIH 358
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ + ++ +++ +++ + I
Sbjct: 359 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 395
Score = 49 (22.3 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q ++SAT+P ++ + DP+ + K + + LE +
Sbjct: 208 QVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI 246
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 231 (86.4 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 73/222 (32%), Positives = 109/222 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKDKSSNGNGES 186
F PT VQ ++P + D++ + TGSGKT +L P+LS+ GP SNG S
Sbjct: 206 FTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNG-AFS 264
Query: 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAI 246
K +++AP+REL QI E KK S +A + GGA+ +Q + + +
Sbjct: 265 SHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACV-VYGGADIGQQMRNMDRGCD-L 322
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREP 306
+V TPGR+ ++ GK+ R+LVLDE D +L F + IVE P
Sbjct: 323 LVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDM--------P 374
Query: 307 KSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
A++ +RQT+M SAT P + AR + D + + V
Sbjct: 375 ----AVK-DRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRV 411
Score = 145 (56.1 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 31/84 (36%), Positives = 41/84 (48%)
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
I F R + L +G A +HGD + R L FKNG +LV ++ARG
Sbjct: 447 IVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARG 506
Query: 477 LDVAECDLVVNLDLPTDSIHYAHR 500
LD+ V+N DLP+D Y HR
Sbjct: 507 LDIPNVSHVINYDLPSDIDDYVHR 530
Score = 42 (19.8 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 132 VPTEVQSAAIPSI--LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
VP + S P + L ++ + +T Y +PI++ L + G+G++G
Sbjct: 181 VPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTG 238
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 243 (90.6 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 70/214 (32%), Positives = 110/214 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q+A P +L DVV + TGSGKT+A+ +P L + NG S K
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL----------NGLSDNK 234
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ ++V+P+REL +Q + L+ ++ KAV + GGA +S Q A KN ++++G
Sbjct: 235 SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVV-VYGGAPKSEQARAA-KNA-SVIIG 291
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ ++ G + +LVLDE D +L F + + I+ H P +P
Sbjct: 292 TPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHT-------P-DP--- 340
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
RQT+ SAT P SV A ++ DP+ +
Sbjct: 341 -TRNGSRQTVFFSATWPESVRALAATFLKDPVKI 373
Score = 129 (50.5 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 435 ARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDS 494
AR +HGD+ + AR L FK+G+ VLV +++ARGLD+ + LV+N+ P
Sbjct: 438 ARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTI 497
Query: 495 IHYAHR 500
Y HR
Sbjct: 498 EDYVHR 503
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 185 (70.2 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 41/160 (25%), Positives = 78/160 (48%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V K + K D L + ++ + F N R++ K+
Sbjct: 233 KKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQ 292
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ LHGD+ + R T +++F++G RVL+T ++ ARG+DV + LV+N DLP++ +Y
Sbjct: 293 FTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENY 352
Query: 498 AHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
HR ++ E + +K+++ I+
Sbjct: 353 IHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIE 392
Score = 175 (66.7 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 45/162 (27%), Positives = 82/162 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI DV+ Q+ +G+GKT + + IL ++ +
Sbjct: 49 FEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI-------------DHED 95
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++A+++AP+REL QI +++ LG + +GG + R ++ + +VVG
Sbjct: 96 PHVQALVMAPTRELAQQI-QKVMSALGEYLNVNILPCIGGTS-VRDDQRKLEAGIHVVVG 153
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ ++ L T + VLDE DE+LS F++ ++ +
Sbjct: 154 TPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEV 195
Score = 49 (22.3 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 311 AMRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+M + Q +++SAT+P V+ + +P+ ++ K+ + LE +
Sbjct: 198 SMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGI 242
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 231 (86.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 70/219 (31%), Positives = 106/219 (48%)
Query: 76 IEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAAN-SFXXXXXXXXXXXXXXXXXFNVPT 134
+E+P+ K D +A + E ES+P + SF F PT
Sbjct: 98 VEVPEVKEVVEPEDSAEA--IADFYE-ESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPT 154
Query: 135 EVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194
+QSA+IP L D+V + TGSGKT AY++PI+ + L K S T +
Sbjct: 155 PIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIER---LLYKPS---------TSTKV 202
Query: 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI 254
+I+ P+REL +Q+ KKL + + VGG N +QEE L K +P IV+ TPGR+
Sbjct: 203 IILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQL-KTRPDIVIATPGRL 261
Query: 255 AE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+ I + + LV+DE D +L F++ + I+
Sbjct: 262 IDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEIL 300
Score = 143 (55.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
G+K +ELHG L + R +K FK+ EV VL+ +L+ARGLD+ + +LV+N D+P
Sbjct: 397 GLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEI 456
Query: 497 YAHR 500
Y HR
Sbjct: 457 YLHR 460
Score = 143 (55.4 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 43/137 (31%), Positives = 69/137 (50%)
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T + +I+ P+REL +Q+ KKL + + VGG N +QEE L K +P IV+
Sbjct: 198 TSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQL-KTRPDIVIA 256
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGR+ + I + + LV+DE D +L F++ + I+ + PK
Sbjct: 257 TPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLI----------PKH 306
Query: 309 ALAMRAERQTIMVSATV 325
+RQT++ SAT+
Sbjct: 307 ------KRQTLLFSATM 317
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 231 (86.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 70/219 (31%), Positives = 106/219 (48%)
Query: 76 IEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAAN-SFXXXXXXXXXXXXXXXXXFNVPT 134
+E+P+ K D +A + E ES+P + SF F PT
Sbjct: 98 VEVPEVKEVVEPEDSAEA--IADFYE-ESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPT 154
Query: 135 EVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194
+QSA+IP L D+V + TGSGKT AY++PI+ + L K S T +
Sbjct: 155 PIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIER---LLYKPS---------TSTKV 202
Query: 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI 254
+I+ P+REL +Q+ KKL + + VGG N +QEE L K +P IV+ TPGR+
Sbjct: 203 IILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQL-KTRPDIVIATPGRL 261
Query: 255 AE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+ I + + LV+DE D +L F++ + I+
Sbjct: 262 IDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEIL 300
Score = 143 (55.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
G+K +ELHG L + R +K FK+ EV VL+ +L+ARGLD+ + +LV+N D+P
Sbjct: 397 GLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEI 456
Query: 497 YAHR 500
Y HR
Sbjct: 457 YLHR 460
Score = 143 (55.4 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 43/137 (31%), Positives = 69/137 (50%)
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T + +I+ P+REL +Q+ KKL + + VGG N +QEE L K +P IV+
Sbjct: 198 TSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQL-KTRPDIVIA 256
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGR+ + I + + LV+DE D +L F++ + I+ + PK
Sbjct: 257 TPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLI----------PKH 306
Query: 309 ALAMRAERQTIMVSATV 325
+RQT++ SAT+
Sbjct: 307 ------KRQTLLFSATM 317
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 253 (94.1 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 71/200 (35%), Positives = 103/200 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKDKSSNGNGES 186
++ PT VQ AIP I+ D++ + TGSGKT A+L+PIL+++ G + S
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 374
Query: 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAI 246
K+ + +++AP+REL QI E KK S + L GG N S Q L + +
Sbjct: 375 RKQYPL-GLVLAPTRELATQIFEEAKKFAYRSRMRPAV-LYGGNNTSEQMRELDRGCH-L 431
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREP 306
+V TPGR+ ++ GK+ RFLVLDE D +L F + RIVE + P
Sbjct: 432 IVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNM--------P 483
Query: 307 KSALAMRAERQTIMVSATVP 326
+ +RQT+M SAT P
Sbjct: 484 PTG-----QRQTLMFSATFP 498
Score = 123 (48.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+HGD + R L+ F++G+ +LV ++ARGLD+ V+N DLP+D Y HR
Sbjct: 589 IHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHR 646
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 228 (85.3 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 67/201 (33%), Positives = 103/201 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GP-LKDKSSNGNGE 185
++ PT VQ +IP++ D++ + TGSGKT A+L+P+++ + GP +S +G
Sbjct: 251 YDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSG- 309
Query: 186 SGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA 245
KK A++++P+REL +QI E +K + + G N Q LR
Sbjct: 310 GRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCH- 368
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
I++ TPGR+ ++ G + GCR+LVLDE D +L F + +IVE N R
Sbjct: 369 ILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVE-------CN-RM 420
Query: 306 PKSALAMRAERQTIMVSATVP 326
P + ER T M SAT P
Sbjct: 421 PS-----KEERITAMFSATFP 436
Score = 148 (57.2 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D+ + F+ R D + L + + +HGDL + R L F+ G +LV
Sbjct: 491 DSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATA 550
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHR 500
++ARGLD+ V+N DLP+D Y HR
Sbjct: 551 VAARGLDIPNVKHVINYDLPSDVDEYVHR 579
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 188 (71.2 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 45/148 (30%), Positives = 73/148 (49%)
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
++ K D L + V + Q V+ FM L +G+ AA +HG+ + AR+ L
Sbjct: 227 VKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRAL 286
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT---DSIHYAHRAXXXXXXXXXXXV 513
FK GEVR+LV +++ARG+D+ + VVN +LP D +H R +
Sbjct: 287 ADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISL 346
Query: 514 VSICEEPEVFVVKKMQKQLAVPIQACEF 541
VS E PE+F ++++ + L + F
Sbjct: 347 VSAIEAPELFAIERLTQALLPRVNLAGF 374
Score = 184 (69.8 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 53/167 (31%), Positives = 83/167 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+N P+ +Q AIP++L DV+ + TG+GKT + LPIL + G +
Sbjct: 21 YNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLA---------KGPKVRA 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLG---PSDKKAVQQLVGGANRSRQEEALRKNKPAI 246
+ A+I+ P+REL QI + L G P K AV + GG + Q + + K I
Sbjct: 72 NQVRALILTPTRELAAQIQDNVM-LYGRHLPL-KSAV--VFGGVKINPQMQRMCKGAD-I 126
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
+V TPGR+ ++ + LVLDE D +L F +H+I++
Sbjct: 127 LVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILK 173
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 188 (71.2 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 45/148 (30%), Positives = 73/148 (49%)
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
++ K D L + V + Q V+ FM L +G+ AA +HG+ + AR+ L
Sbjct: 227 VKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRAL 286
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT---DSIHYAHRAXXXXXXXXXXXV 513
FK GEVR+LV +++ARG+D+ + VVN +LP D +H R +
Sbjct: 287 ADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISL 346
Query: 514 VSICEEPEVFVVKKMQKQLAVPIQACEF 541
VS E PE+F ++++ + L + F
Sbjct: 347 VSAIEAPELFAIERLTQALLPRVNLAGF 374
Score = 184 (69.8 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 53/167 (31%), Positives = 83/167 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+N P+ +Q AIP++L DV+ + TG+GKT + LPIL + G +
Sbjct: 21 YNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLA---------KGPKVRA 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLG---PSDKKAVQQLVGGANRSRQEEALRKNKPAI 246
+ A+I+ P+REL QI + L G P K AV + GG + Q + + K I
Sbjct: 72 NQVRALILTPTRELAAQIQDNVM-LYGRHLPL-KSAV--VFGGVKINPQMQRMCKGAD-I 126
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
+V TPGR+ ++ + LVLDE D +L F +H+I++
Sbjct: 127 LVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILK 173
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 240 (89.5 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 73/202 (36%), Positives = 102/202 (50%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ +P I D++ + TGSGKT A+LLPIL ++ + D + ++
Sbjct: 204 PTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQQL--MADGVAASRFSEIQEP-- 259
Query: 193 EAVIVAPSRELGMQIVREIKKL-LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251
EAVIVAP+REL QI +E +K G + V + GG N Q + K ++ GTP
Sbjct: 260 EAVIVAPTRELINQIYQEARKFSFGTCVRPVV--VYGGVNTGYQMREIEKGCN-VLCGTP 316
Query: 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALA 311
GR+ ++ GK+ R LVLDE D +L F M R+V +P P
Sbjct: 317 GRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRRLV--------GSPGMPS---- 364
Query: 312 MRAERQTIMVSATVPFSVIRAA 333
+ ERQT+M SAT P + R A
Sbjct: 365 -KEERQTLMFSATFPEDIQRLA 385
Score = 132 (51.5 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 37/130 (28%), Positives = 60/130 (46%)
Query: 394 VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD-AVFKLEARGMKAAELHGDLGKLAR 452
VTK +K + L + + ++ + F+ RQ A F + + + +HGD + R
Sbjct: 415 VTKF-NKREQLLDLLRTIGSERTMVFVETKRQADFIAAFLCQEK-VPTTSIHGDREQRER 472
Query: 453 STTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXX 512
L F++G+ VLV +++RGLD+ + VVN DLP Y HR
Sbjct: 473 EKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGR 532
Query: 513 VVSICEEPEV 522
VS + P+V
Sbjct: 533 AVSFYD-PDV 541
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 205 (77.2 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 59/168 (35%), Positives = 89/168 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T++Q+ IP +L DV+ ++ TG+GKT A+ LP L+K+ D S KK
Sbjct: 35 FTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKI----DTSI-------KK 83
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGGANRSRQEEALRKNKPAIV 247
+ +++AP+REL MQ+ I+ G D K V L GG + Q + L + +V
Sbjct: 84 PQL--MVLAPTRELAMQVAEAIESF-G-KDMKGLRVATLYGGQSYGPQFQQLERGAQ-VV 138
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
VGTPGR+ + L R VLDE DE+L+ F E + I++H+
Sbjct: 139 VGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHI 186
Score = 169 (64.5 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 36/131 (27%), Positives = 61/131 (46%)
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
K+ L R ++ +I F+ D KLE G A L+GDL + R + +
Sbjct: 241 KMTALERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQM 300
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEE 519
K+G+ +LV ++ ARGLD+ LV+N DLP D+ Y HR ++
Sbjct: 301 KSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRP 360
Query: 520 PEVFVVKKMQK 530
E++ ++ ++
Sbjct: 361 REMYSIRHYER 371
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 187 (70.9 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
Identities = 57/197 (28%), Positives = 96/197 (48%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q AIP +L+ DV+ + TG+GKT A+ LP++ + ++ E+ K +I
Sbjct: 29 PTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRF--IEQPWQR---EANSK-EI 82
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
A+++ P+REL Q++ ++ ++ K V + GG + Q LR I++ TPG
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMKVQLNHLRGGVD-ILIATPG 140
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG--RRS---GANPREPK 307
R+ + + L LVLDE D +L F + R++ + R++ A
Sbjct: 141 RLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKI 200
Query: 308 SALAMRAERQTIMVSAT 324
A+A R R I V T
Sbjct: 201 KAVAYRIMRDPIEVQVT 217
Score = 182 (69.1 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
Identities = 46/141 (32%), Positives = 77/141 (54%)
Query: 392 YCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKL 450
Y V K + K + L + + + Q V+ F TRQ DA+ + L+ G+KA ++GD +
Sbjct: 231 YPVDK-KRKRELLSYLIGSKNWQQVLVF-TKTRQGSDALAEELKLDGIKAVSINGDKSQG 288
Query: 451 ARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXX 510
AR L FK G+VR L+ +++ARGLD+A+ + VVN D+P + Y HR
Sbjct: 289 ARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLA 348
Query: 511 XXVVSIC---EEPEVFVVKKM 528
VS+ E+P++ ++++
Sbjct: 349 GLAVSLLSHDEQPQLEAIERL 369
Score = 41 (19.5 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 316 RQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
RQT+ SAT + A DP+ VQ V P S T
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQ---VTPSNSTAET 225
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 187 (70.9 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
Identities = 57/197 (28%), Positives = 96/197 (48%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q AIP +L+ DV+ + TG+GKT A+ LP++ + ++ E+ K +I
Sbjct: 29 PTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRF--IEQPWQR---EANSK-EI 82
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
A+++ P+REL Q++ ++ ++ K V + GG + Q LR I++ TPG
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMKVQLNHLRGGVD-ILIATPG 140
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG--RRS---GANPREPK 307
R+ + + L LVLDE D +L F + R++ + R++ A
Sbjct: 141 RLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKI 200
Query: 308 SALAMRAERQTIMVSAT 324
A+A R R I V T
Sbjct: 201 KAVAYRIMRDPIEVQVT 217
Score = 182 (69.1 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
Identities = 46/141 (32%), Positives = 77/141 (54%)
Query: 392 YCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKL 450
Y V K + K + L + + + Q V+ F TRQ DA+ + L+ G+KA ++GD +
Sbjct: 231 YPVDK-KRKRELLSYLIGSKNWQQVLVF-TKTRQGSDALAEELKLDGIKAVSINGDKSQG 288
Query: 451 ARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXX 510
AR L FK G+VR L+ +++ARGLD+A+ + VVN D+P + Y HR
Sbjct: 289 ARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLA 348
Query: 511 XXVVSIC---EEPEVFVVKKM 528
VS+ E+P++ ++++
Sbjct: 349 GLAVSLLSHDEQPQLEAIERL 369
Score = 41 (19.5 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 316 RQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
RQT+ SAT + A DP+ VQ V P S T
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQ---VTPSNSTAET 225
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 235 (87.8 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 74/220 (33%), Positives = 110/220 (50%)
Query: 81 AKVKAVRS--DGIKAAGVKKSLEIESAPFAANSFXXXXXXXXXXXXXXXXXFNVPTEVQS 138
A+V +R+ DGIK G+ P S+ + PT +Q+
Sbjct: 394 AEVDELRASLDGIKIRGI-------DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQA 446
Query: 139 AAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA 198
AIP+I DV+ + TGSGKT+A+LLP+ + KD+ GE I A+I+
Sbjct: 447 QAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHI---KDQRPLKTGEG----PI-AIIMT 498
Query: 199 PSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEI- 257
P+REL +QI RE K L + +A GGA Q L++ IVV TPGR+ ++
Sbjct: 499 PTRELAVQIFRECKPFLKLLNIRACCAY-GGAPIKDQIADLKRGAE-IVVCTPGRMIDVL 556
Query: 258 SA-AGKL-HTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
SA AG++ + H C +LVLDE D + F + RI+ ++
Sbjct: 557 SANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596
Score = 143 (55.4 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 50/153 (32%), Positives = 73/153 (47%)
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
LD +T++ F++ ++ DA+ L RG + +HG + R +T+ +K G VL+
Sbjct: 667 LDVRTLV-FVDR-QESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIA 724
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVS-ICEEPEVFVVK-- 526
+ ARGLDV LVVN D P Y HR V+ I E E + V
Sbjct: 725 TSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIA 784
Query: 527 ---KMQKQLAVP--IQ--ACEFTEGRLVIGKEE 552
KM KQ VP +Q A +F E ++ GKE+
Sbjct: 785 KALKMSKQ-PVPKELQTLASQFLE-KVKAGKEK 815
Score = 98 (39.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 51/163 (31%), Positives = 80/163 (49%)
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
A+I+ P+REL +QI RE K L + +A GGA Q L++ IVV TPGR
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAY-GGAPIKDQIADLKRGAE-IVVCTPGR 551
Query: 254 IAEI-SA-AGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALA 311
+ ++ SA AG++ T+ R L +DE + M + G P+ +
Sbjct: 552 MIDVLSANAGRV-TNLHRCTYL-VLDEA------DRMFDL--------GFEPQVMRIINN 595
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAKNVIPLE 352
+R +RQT++ SAT P ++ AR P + V ++V+ E
Sbjct: 596 IRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASE 638
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 214 (80.4 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 55/163 (33%), Positives = 88/163 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F+ P+ +QS A P +L+ HD++ + TG+GKTLA+LLP + + S G G
Sbjct: 303 FSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHT----EYQSTPRGTRG-- 356
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL +QI E+KK KAV + GG NR+ Q L + I++
Sbjct: 357 -GANVLVLAPTRELALQIEMEVKKY-SFRGMKAVC-VYGGGNRNMQISDLERGAE-IIIC 412
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ ++ A + +LVLDE D +L F + +++
Sbjct: 413 TPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVM 455
Score = 123 (48.4 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 400 KVDTLRRCVHALDA-QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
K +T+ V + + +I F + D +L G +HG+ ++ R +
Sbjct: 515 KFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIAD 574
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
K+G VR+LV ++++RGLD+ + V+N D P + Y HR
Sbjct: 575 IKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHR 616
Score = 79 (32.9 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
G P+ K L +R +RQTIM SAT P V R A+S+ +P+ V
Sbjct: 446 GFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQV 489
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 196 (74.1 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 58/164 (35%), Positives = 84/164 (51%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ AIP IL+ DV++ + TG+GKT + LP+L ++ + S K I
Sbjct: 33 PTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQR----SAKPV-I 87
Query: 193 EAVIVAPSRELGMQI---VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I+ P+REL +Q+ VR K L P V GG + Q LR+ I+V
Sbjct: 88 RALILTPTRELAVQVFECVRAYGKYL-PLKATVVH---GGVSIKPQINHLRRGVD-ILVA 142
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ G L+ F VLDE D +L F + RI++
Sbjct: 143 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILK 186
Score = 171 (65.3 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 38/135 (28%), Positives = 69/135 (51%)
Query: 398 QHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLK 457
Q K + L + + + + V+ F +LE+ G+ +A +HG+ + AR L
Sbjct: 241 QRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALT 300
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSIC 517
+FK G++RVLV +++ARGLD+ + V+N +LP + Y HR +S+
Sbjct: 301 QFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLV 360
Query: 518 EEPEVFVVKKMQKQL 532
EV +++ ++K L
Sbjct: 361 SGDEVRLLRDIEKLL 375
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 196 (74.1 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 58/164 (35%), Positives = 84/164 (51%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ AIP IL+ DV++ + TG+GKT + LP+L ++ + S K I
Sbjct: 33 PTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQR----SAKPV-I 87
Query: 193 EAVIVAPSRELGMQI---VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I+ P+REL +Q+ VR K L P V GG + Q LR+ I+V
Sbjct: 88 RALILTPTRELAVQVFECVRAYGKYL-PLKATVVH---GGVSIKPQINHLRRGVD-ILVA 142
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ G L+ F VLDE D +L F + RI++
Sbjct: 143 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILK 186
Score = 171 (65.3 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 38/135 (28%), Positives = 69/135 (51%)
Query: 398 QHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLK 457
Q K + L + + + + V+ F +LE+ G+ +A +HG+ + AR L
Sbjct: 241 QRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALT 300
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSIC 517
+FK G++RVLV +++ARGLD+ + V+N +LP + Y HR +S+
Sbjct: 301 QFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLV 360
Query: 518 EEPEVFVVKKMQKQL 532
EV +++ ++K L
Sbjct: 361 SGDEVRLLRDIEKLL 375
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 201 (75.8 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 52/165 (31%), Positives = 85/165 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG--PLKDKSSNGNGESG 187
F PT +QS + P IL+ D++ + TG+GKTL+YL+P + P+ K NG G
Sbjct: 221 FQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQPVSRKQRNGPG--- 277
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++ P+REL +Q+ E K L K + GG NR Q + + K I+
Sbjct: 278 ------MLVLTPTRELALQVEAECSKYLYKGLKSVC--IYGGGNRKGQIQDVTKGVD-II 328
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+ TPGR+ ++ ++ +LVLDE D++L F + +I+
Sbjct: 329 IATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 373
Score = 145 (56.1 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQT-VIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K VT + K ++ + +L + VI F++ D L +G+ LHGD
Sbjct: 420 VKQNIIVTTEEEKRSLVKEFLQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGD 479
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R L+ F+ G V++L+ +L+ARGLDV++ V N + P + Y HR
Sbjct: 480 REQSDRDQALEDFRTGRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHR 533
Score = 67 (28.6 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 307 KSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
K L +R +RQT+M +A+ P S R A+S+ P++V
Sbjct: 371 KILLDVRPDRQTVMTTASWPDSTRRLAQSYLKQPMIV 407
Score = 41 (19.5 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 378 KQADQSLPPALKHYYCVTKLQHK 400
++A+Q +PP+L+ K QHK
Sbjct: 566 QRANQIVPPSLRSMADRFKKQHK 588
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 221 (82.9 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 48/164 (29%), Positives = 94/164 (57%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q+ AIP IL+ D++ + TG+GKT +++LPIL K+ G++ +K
Sbjct: 21 YQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLR---------QGQTQRK 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ A+I+ P+REL MQ+ ++++ + K++ + GG + Q++ L ++V
Sbjct: 72 KRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLA-VFGGVDEQAQKQRLIDGVD-VLVA 129
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ ++ +VLDE D +L F E++++I++
Sbjct: 130 TPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIID 173
Score = 140 (54.3 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 44/176 (25%), Positives = 72/176 (40%)
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
A+Q+ + + K L ++ + F+ V +LE RG+
Sbjct: 210 ANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIH 269
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
A H + R+ L+ FK+G+++ LV ++ARG+D+ + VVN DLP + Y H
Sbjct: 270 AEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVH 329
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLA-VPIQACEFTEGRLVIGKEEEK 554
R +S FV K K L + + E R+V G E +K
Sbjct: 330 RIGRTGRAEAVGEAIS-------FVSKDNFKNLCMIESRLGHLIERRVVEGFEPKK 378
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 221 (82.9 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 48/164 (29%), Positives = 94/164 (57%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q+ AIP IL+ D++ + TG+GKT +++LPIL K+ G++ +K
Sbjct: 21 YQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLR---------QGQTQRK 71
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ A+I+ P+REL MQ+ ++++ + K++ + GG + Q++ L ++V
Sbjct: 72 KRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLA-VFGGVDEQAQKQRLIDGVD-VLVA 129
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ ++ +VLDE D +L F E++++I++
Sbjct: 130 TPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIID 173
Score = 140 (54.3 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 44/176 (25%), Positives = 72/176 (40%)
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
A+Q+ + + K L ++ + F+ V +LE RG+
Sbjct: 210 ANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIH 269
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
A H + R+ L+ FK+G+++ LV ++ARG+D+ + VVN DLP + Y H
Sbjct: 270 AEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVH 329
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLA-VPIQACEFTEGRLVIGKEEEK 554
R +S FV K K L + + E R+V G E +K
Sbjct: 330 RIGRTGRAEAVGEAIS-------FVSKDNFKNLCMIESRLGHLIERRVVEGFEPKK 378
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 208 (78.3 bits), Expect = 7.2e-26, Sum P(2) = 7.2e-26
Identities = 66/228 (28%), Positives = 113/228 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +QS AI I+ DV+ Q+ +G+GKT + + +L + D +K
Sbjct: 43 FEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAI----DL---------RK 89
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
D++A+I++P+REL QI + +K L + A + GG + ++K+ V G
Sbjct: 90 KDLQALILSPTRELASQIGQVVKNLGDYMNVNAFA-ITGGKTLKDDLKKMQKHGCQAVSG 148
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLS--FNFREAMHRIVEHVGRRSGANPREPK 307
TPGR+ ++ L T + LVLDE DELLS F++ ++ I + PK
Sbjct: 149 TPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL----------PK 198
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
+ Q ++VSAT+ ++ R + +DP+ + K + I LE +
Sbjct: 199 NC-------QVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGI 239
Score = 154 (59.3 bits), Expect = 7.2e-26, Sum P(2) = 7.2e-26
Identities = 40/160 (25%), Positives = 75/160 (46%)
Query: 378 KQADQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR 436
K+ + SL +K Y V K + K DTL +L + F N +++ +L
Sbjct: 230 KRDEISLE-GIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQS 288
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
+HGD+ + R + F+ G RVL++ ++ ARG+DV + LV+N DLP +
Sbjct: 289 NFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIEN 348
Query: 497 YAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
Y HR ++ + ++ +++++K ++ I
Sbjct: 349 YIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKI 388
>TAIR|locus:2118509 [details] [associations]
symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
bisphosphate carboxylase complex biogenesis" evidence=IMP]
[GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
GO:GO:1901259 Uniprot:Q56X76
Length = 621
Score = 239 (89.2 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 66/199 (33%), Positives = 106/199 (53%)
Query: 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD 191
VPTE+Q IP++++ VV+ S+TGSGKTLAYLLPI+ +++ +N G+ K
Sbjct: 134 VPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL---MREDEAN-LGKKTKPRR 189
Query: 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251
V++ P+REL Q+ R K + + +++ LV G +R R +E N +VVGTP
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSI--LVSGGSRIRPQEDSLNNAIDMVVGTP 247
Query: 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALA 311
GRI + G + +LVLDE D + F + + + + +R AL
Sbjct: 248 GRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQR----------ALK 297
Query: 312 MRAER-QTIMVSATVPFSV 329
+ QT++V+AT+ +V
Sbjct: 298 TNDQGFQTVLVTATMTMAV 316
Score = 127 (49.8 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 33/119 (27%), Positives = 53/119 (44%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN--GEVRVLVTNELS 473
V+ F N + L + HG++ R LKKFK+ G+ LV +L+
Sbjct: 373 VMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLA 432
Query: 474 ARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQL 532
ARGLD+ + D VV D P +SI Y HR V S+ + + ++++ +
Sbjct: 433 ARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAM 490
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 187 (70.9 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 42/136 (30%), Positives = 67/136 (49%)
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
L HK LR + + I F R ++ +L+A+G AA LHGD+ + AR+ T+
Sbjct: 228 LHHKNRLLRHLITDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTI 287
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSI 516
K G +R+LV +++ARGLDV V+N DLP + Y HR +S
Sbjct: 288 AAMKQGRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISF 347
Query: 517 CEEPEVFVVKKMQKQL 532
EV + ++++ +
Sbjct: 348 ASLNEVNYLARIERYI 363
Score = 175 (66.7 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 48/163 (29%), Positives = 79/163 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT VQ+AA+P L+N D++ + TG+GKT A++LP L ++ G G +
Sbjct: 21 YTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLS----SPPQGPGRGPR- 75
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVV 248
+++ P+REL Q+ ++ G + ++GG Q L + P +V
Sbjct: 76 ----VLVLTPTRELAQQVTDAVRTY-GAFMRVRSGAILGGMPYHAQLRLL--SAPVDFIV 128
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ ++ L LVLDE D +L F + + RI
Sbjct: 129 ATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRI 171
Score = 42 (19.8 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 309 ALAMRAERQTIMVSATVPFSVIRAA 333
A A A RQT++ +AT+ ++ R A
Sbjct: 172 AAASPATRQTLLFTATMDSAMARLA 196
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 196 (74.1 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 58/170 (34%), Positives = 81/170 (47%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q A IP L D+ + TG+GKT A++LP+L + L K ++
Sbjct: 200 FKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLER---LIYKP--------RQ 248
Query: 190 TDIEAVIV-APSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
I V+V P+RELG+Q V + K L VGG + QE ALR P I++
Sbjct: 249 APITRVLVLVPTRELGIQ-VHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSG-PDILI 306
Query: 249 GTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGR 297
TPGR+ + + H L+LDE D +L F E M I+ R
Sbjct: 307 ATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSR 356
Score = 176 (67.0 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 39/142 (27%), Positives = 71/142 (50%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
V+ F +Q L G++ ELHG+L + R L++FK+ ++ +LV +++AR
Sbjct: 428 VMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDVAAR 487
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVP 535
GLD+ V+N +P + HY HR VS+ E E ++K++ K P
Sbjct: 488 GLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKTP 547
Query: 536 IQACEFTEGRLVIGKEEEKTLE 557
++A + ++ +E+ + LE
Sbjct: 548 VKARILPQDVILKFREKIENLE 569
>ASPGD|ASPL0000056064 [details] [associations]
symbol:AN0204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AACD01000005
InterPro:IPR025313 Pfam:PF13959 KO:K14806 RefSeq:XP_657808.1
ProteinModelPortal:Q5BGX6 STRING:Q5BGX6
EnsemblFungi:CADANIAT00002528 GeneID:2875981 KEGG:ani:AN0204.2
HOGENOM:HOG000268799 OMA:RAYATHI OrthoDB:EOG4W6S47 Uniprot:Q5BGX6
Length = 778
Score = 259 (96.2 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 70/203 (34%), Positives = 110/203 (54%)
Query: 133 PTEVQSAAIPSILKNH-DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGN--GESGKK 189
PT +Q A+I +LK D IQ+ TGSGKTLAYLLP++ ++ L + G+ G++
Sbjct: 175 PTAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPLVQRIMALSRAKNEGDAKGDTSVH 234
Query: 190 TD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
D + A+I+AP+REL QI ++ LL + ++GG + ++ LRK I+
Sbjct: 235 RDSGLFAIILAPTRELCKQISVVLEGLLRCAHWIVAGTVIGGEKKKSEKARLRKGLN-IL 293
Query: 248 VGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREP 306
V TPGR+A+ + L R+LVLDE D L+ F + + I+ + R + P
Sbjct: 294 VATPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFEKELQEIISKLDAR-----QRP 348
Query: 307 KSALAMRAERQTIMVSATVPFSV 329
+ A+R TI+ SAT+ +V
Sbjct: 349 SRIPGVPAKRATILCSATLKMNV 371
Score = 108 (43.1 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 431 FKLEARGMKAAELHGDLGKLARSTTLKKF-KNGEVRVLVTNELSARGLDVAECDLVVNLD 489
F + + +LHG L + R++TL F KN + VL+ ++++RGLD+ DLVV D
Sbjct: 507 FSNSSNAVTMYKLHGSLPQHVRTSTLSSFAKNRDPSVLICTDVASRGLDLPNVDLVVEYD 566
Query: 490 LPTDSIHYAHR----AXXXXXXXXXXXVVSICEEPEVFVVKK 527
+ + HR A ++ CEE V ++K+
Sbjct: 567 PAFSADEHLHRIGRTARLGRDGRALVFLLPGCEENYVEILKR 608
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 202 (76.2 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 52/165 (31%), Positives = 85/165 (51%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
T +Q AIP+I + DV+ + TG+GKT A+ LPIL K+ +++ S K++
Sbjct: 25 TPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKM--VENPSET------LKSNTR 76
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
+I+ P+REL Q+ ++ +V + GG Q + L++ I+V TPGR
Sbjct: 77 VLILTPTRELAAQVAENVEAY-SKYLNFSVLTIYGGVKVETQAQKLKRGAD-IIVATPGR 134
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
+ E A L FLVLDE D +L F + +I++ V ++
Sbjct: 135 LLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKK 179
Score = 159 (61.0 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 41/141 (29%), Positives = 68/141 (48%)
Query: 398 QHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTL 456
+ K + L + + Q V+ F TR D + K L G+ + +HG+ + +R L
Sbjct: 229 RRKRELLSELIGKKNWQQVLVF-TATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRAL 287
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSI 516
++F +G+VRVLV E++ARGLD+ + VVN DLP + Y HR +S
Sbjct: 288 REFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISF 347
Query: 517 CEEPEVFVVKKMQKQLAVPIQ 537
E + ++K + I+
Sbjct: 348 VSREEERTLADIEKLIGQKIR 368
Score = 39 (18.8 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 311 AMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
A+ +RQ ++ SAT +V + A P ++ A
Sbjct: 175 AVNKKRQNLLFSATFSSAVKKLANEMMIKPQVISA 209
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 210 (79.0 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 67/209 (32%), Positives = 100/209 (47%)
Query: 92 KAAGVKKSLEIESAPFA--ANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAAIPSILKNHD 149
KAAG LE E P A SF + VPT++Q AIP L+ D
Sbjct: 9 KAAG----LEAEEVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRD 64
Query: 150 VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR 209
++ + TGSGKT A+ LPIL L D + A+++ P+REL QI
Sbjct: 65 IIGLAETGSGKTGAFALPILQA---LLDAPQR----------LFALVLTPTRELAFQISE 111
Query: 210 EIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGC 268
+ + L G S +VGG + Q AL K KP I++ TPGR+ + + +
Sbjct: 112 QFEAL-GSSIGVHSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLVDHLENTKGFNLRAL 169
Query: 269 RFLVLDEIDELLSFNFREAMHRIVEHVGR 297
+FLV+DE D +L+ +F + +I++ + R
Sbjct: 170 KFLVMDEADRILNMDFETEVDKILKVIPR 198
Score = 152 (58.6 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 40/173 (23%), Positives = 76/173 (43%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
L+ YY + K L ++ L + + F + + L G A LHG +
Sbjct: 239 LQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQM 298
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
+ R +L KFK +L+ ++++RGLD+ D+V+N D+PT S Y HR
Sbjct: 299 SQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARA 358
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
++ + +V + ++++ + + A E +++ E+ EA R
Sbjct: 359 GRSGKSITFVTQYDVELFQRIEHLIGKKLPAFPMQEEEVMM--LTERVAEAQR 409
Score = 37 (18.1 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 290 RIVEHVGRRSGANPREPKSALAMRAER 316
R+V+H+ G N R K + A+R
Sbjct: 153 RLVDHLENTKGFNLRALKFLVMDEADR 179
>UNIPROTKB|Q9NZE6 [details] [associations]
symbol:EIF4A2 "BM-010" species:9606 "Homo sapiens"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CH471052 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
HOVERGEN:HBG107989 HSSP:P10081 EMBL:AC112907 UniGene:Hs.518475
UniGene:Hs.599481 HGNC:HGNC:3284 ChiTaRS:EIF4A2 EMBL:AF208852
IPI:IPI00030296 SMR:Q9NZE6 STRING:Q9NZE6 Ensembl:ENST00000356531
UCSC:uc003fqv.3 Uniprot:Q9NZE6
Length = 312
Score = 202 (76.2 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 152 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 211
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 212 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 265
Score = 124 (48.7 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 200 SRELGMQIVREIKKLLGPSDKKAV--QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEI 257
SREL +++ K +L D +GG N + + L+ P IVVGTPGR+ ++
Sbjct: 12 SRELLFPVLKIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDM 71
Query: 258 SAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
L + VLDE DE+LS F++ ++ I +
Sbjct: 72 LNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 107
Score = 56 (24.8 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 114 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 152
Score = 39 (18.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 131 KKFMRDPIRILVKKEELTLEGI 152
>FB|FBgn0015075 [details] [associations]
symbol:Ddx1 "Dead-box-1" species:7227 "Drosophila
melanogaster" [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0006446 "regulation of translational initiation"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=ISS]
[GO:0001700 "embryonic development via the syncytial blastoderm"
evidence=IEP] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:AE014296 GO:GO:0001700 GO:GO:0003682 GO:GO:0042254
InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527 GO:GO:0006302
GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GO:GO:0004518 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 EMBL:AF057167
GeneTree:ENSGT00660000095174 GO:GO:0033677 CTD:1653 KO:K13177
OMA:TLNNVKQ EMBL:U34773 EMBL:AY119661 RefSeq:NP_524212.2
UniGene:Dm.2501 ProteinModelPortal:Q9VNV3 SMR:Q9VNV3 IntAct:Q9VNV3
STRING:Q9VNV3 PaxDb:Q9VNV3 PRIDE:Q9VNV3 EnsemblMetazoa:FBtr0078492
GeneID:40457 KEGG:dme:Dmel_CG9054 UCSC:CG9054-RA
FlyBase:FBgn0015075 InParanoid:Q9VNV3 OrthoDB:EOG43FFBW
PhylomeDB:Q9VNV3 GenomeRNAi:40457 NextBio:818872 Bgee:Q9VNV3
GermOnline:CG9054 Uniprot:Q9VNV3
Length = 727
Score = 254 (94.5 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 101/351 (28%), Positives = 149/351 (42%)
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
P SK P+ ++ +A+I+ PSREL Q +I+K V+ L
Sbjct: 262 PEHSKANPITGPAAGAPSAKPAPNAPQAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSL 321
Query: 227 --VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFN 283
+GG Q+ L + IVVGTPGR+ E+ +G L TH CRF VLDE D LL
Sbjct: 322 LLIGGVRLEEQKAQLMQGTH-IVVGTPGRLEEMINSGLVLLTH-CRFFVLDEADALLKQG 379
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV-PFSVIRAARSWGHDPLL 342
+ E + R+ + + PK R Q ++ SAT+ F V + A H P
Sbjct: 380 YTELIDRLHKQI----------PKITSDGR-RLQMVVCSATLHAFEVKKMAERLMHFPTW 428
Query: 343 VQAK--NVIP--LESMPATXXXXXXXXXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQ 398
V K + +P + + ++ P H L
Sbjct: 429 VDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQPIGTDGVHDRDNVHPG-NH--SKETLS 485
Query: 399 HKVDTLRR--CVHALDAQTV---IAFMNNTRQLKDAVFK-LEARGMKAAE---LHGDLGK 449
V L+ CVHA+D + I F T+Q D + + L RG K LHGD
Sbjct: 486 QAVKLLKGEYCVHAIDKHNMDRAIIFCR-TKQDCDNLERFLRQRGGKHYSCVCLHGDRKP 544
Query: 450 LARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R L+ FK +V+ L+ +++ARGLD+ ++N+ LP D +Y HR
Sbjct: 545 QERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHR 595
Score = 112 (44.5 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGP-LKDKSSNGNGESG 187
+ +PT+VQ+ AIP IL DV++ + TGSGKT A+ LPIL V L+D G+ G
Sbjct: 22 WTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGG 80
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 208 (78.3 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 51/167 (30%), Positives = 97/167 (58%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T++Q+ AIP LK D++ + TGSGKTLA+L+P+L K+ +++ + ++
Sbjct: 69 FETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEKL--YREQWT-------QE 119
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ A++++P+REL +Q + ++K+ G + ++GG +S +EEA ++ I++G
Sbjct: 120 AKLGALVLSPTRELAVQTFQVLRKI-GRHHLFSAGLVIGG--KSVREEAEALSRMNILIG 176
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGRI + + + LVLDE D ++ F+ + +V+H+
Sbjct: 177 TPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHL 223
Score = 163 (62.4 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 43/161 (26%), Positives = 78/161 (48%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAV--FKLEAR 436
+A + P L+ +Y VT L K+DTL + A ++ F+++ +Q++ F+
Sbjct: 259 EATTATPSTLQQHYIVTPLPEKLDTLWGFIKANLKSKMVVFLSSGKQVRFVYESFRQMQP 318
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
G+ +HG +LAR K+F + + L ++ ARG+D D VV +D P D+
Sbjct: 319 GIPLLHMHGRQKQLARLDVTKRFDSSKHACLFATDVIARGIDFTGVDWVVQVDAPEDTDD 378
Query: 497 YAHRAXXXXXXXXXX-XVVSICEEPEVFVVKKMQKQLAVPI 536
Y HR V+ + E ++K+++++ VPI
Sbjct: 379 YIHRVGRTARYEREGKAVIFLDPSEEAGMLKRLERK-KVPI 418
Score = 56 (24.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 34/110 (30%), Positives = 53/110 (48%)
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+S +EEA ++ I++GTPGRI + THG F ++D L EA RI
Sbjct: 159 KSVREEAEALSRMNILIGTPGRILQHLD----QTHG--F----DVDNLQLLVLDEA-DRI 207
Query: 292 VEHVGRRSGANPREPKSALA-MRAERQTIMVSATVPFSVIRAARSWGHDP 340
++ +G + R+ + + + RQT++ SAT V AR DP
Sbjct: 208 MD-LGFQ-----RDVDALVQHLPTTRQTLLFSATQSKKVSDLARLSLKDP 251
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 189 (71.6 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 50/165 (30%), Positives = 85/165 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG--PLKDKSSNGNGESG 187
F PT +QS A P IL+ D++ + TG+GKTL+YL+P + P+ ++ NG G
Sbjct: 261 FQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQRARNGPG--- 317
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++ P+REL +Q+ E + K + GG +R Q + L K I+
Sbjct: 318 ------MLVLTPTRELALQVDAECSEYSYRGLKSVC--IYGGGDRDGQIKDLSKGAD-II 368
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+ TPGR+ ++ ++ +LVLDE D++L F + +I+
Sbjct: 369 IATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKIL 413
Score = 132 (51.5 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 30/85 (35%), Positives = 43/85 (50%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
VI F++ L R + LHG+ + R LK FK G+VR+L+ +L++R
Sbjct: 489 VIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLASR 548
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHR 500
GLDV + V N D P + Y HR
Sbjct: 549 GLDVHDVTHVYNYDFPRNIEEYVHR 573
Score = 90 (36.7 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
G P+ K L +R +RQT+M SAT P++V R A+S+ +P++V
Sbjct: 404 GFEPQIMKILLDVRPDRQTVMTSATWPYAVRRLAQSYLKEPMIV 447
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 187 (70.9 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 40/121 (33%), Positives = 66/121 (54%)
Query: 381 DQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K +Y V K + K++TL L + F+N R++ K+ +R
Sbjct: 247 DELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 306
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT +Y H
Sbjct: 307 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 366
Query: 500 R 500
R
Sbjct: 367 R 367
Score = 175 (66.7 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 48/164 (29%), Positives = 84/164 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q I K DV+ Q+ +G+GKT + +L ++ D S
Sbjct: 61 FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQL----DISL--------- 107
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI ++ + LG Q VGG + R+++ + ++ +VVG
Sbjct: 108 VQCQALVLAPTRELAQQI-EKVMRALGDYLGVKAQACVGGTS-VREDQRVLQSGVHVVVG 165
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 166 TPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQ 209
Score = 43 (20.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 457 KKFKNGEVRVLVT-NELSARGL 477
+KF N VR+LV +EL+ G+
Sbjct: 233 RKFMNKPVRILVKRDELTLEGI 254
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 254 (94.5 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 69/202 (34%), Positives = 109/202 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q A+I ILK +D ++++ TGSGKTL+YL+P++ K+ + S+G
Sbjct: 231 PTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDG---------C 281
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
VI+ P+REL QI E++KLL P ++GG NRS ++ +RK I+V TPG
Sbjct: 282 YCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGIN-ILVATPG 340
Query: 253 RIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALA 311
R+ + + T ++ +LDE D+LL F + + I+ N + K
Sbjct: 341 RLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTTII---------NLLDSKKR-T 390
Query: 312 MRAERQTIMVSATVPFSVIRAA 333
M+ +RQ I+VSAT+ + R A
Sbjct: 391 MKFKRQNILVSATLSEGISRLA 412
Score = 114 (45.2 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ Q A N ++K +VF + +LHG+L + R+ T FKN +L+T
Sbjct: 582 IEKQIKEATSNPNYRVKTSVFSVPI-----FKLHGELDQQTRTKTFFDFKNSPNGILLTT 636
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
++SARGLD+ + +V D +D+ Y HR
Sbjct: 637 DVSARGLDLPSVNWIVQYDPCSDTKDYIHR 666
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 200 (75.5 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 54/165 (32%), Positives = 88/165 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
FN P E+Q +IP LK D++ + TGSGKT A+++P+L K+ L+ + G
Sbjct: 139 FNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKL--LE--APQG------- 187
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ + +AP+REL QI + + G + LVGG + Q AL K KP +VVG
Sbjct: 188 --LFCLALAPTRELAYQIADQFNAI-GSTIGVKTCVLVGGIDSMSQSLALAK-KPHVVVG 243
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
+PGR+ + + ++ ++DE D L S +F E ++ I++
Sbjct: 244 SPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILK 288
Score = 165 (63.1 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 40/148 (27%), Positives = 70/148 (47%)
Query: 382 QSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAA 441
Q++ L+ Y V ++K L ++ L I F + L G A
Sbjct: 328 QTVDTLLQQYLFVP-FKYKDCYLAYILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAI 386
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501
++GD+ + R +L KFK G +LV +++ARGLD+ DLV+N D+PT+S Y HR
Sbjct: 387 PINGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRV 446
Query: 502 XXXXXXXXXXXVVSICEEPEVFVVKKMQ 529
++I + +V + ++++
Sbjct: 447 GRTARAGNSGRAITIVTQYDVEMYQRIE 474
Score = 67 (28.6 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 243 KPAIVVGTPGRIAE-ISAAGKLHTH-GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300
K ++VG +++ ++ A K H G VL ++ FN R + I++ R
Sbjct: 217 KTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFS 276
Query: 301 ANPREPKSAL--AMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
A+ E + + + ER T + SAT+ V + R+ +P+ VQ
Sbjct: 277 ADFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQRASLVNPVKVQ 322
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 175 (66.7 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
Identities = 38/157 (24%), Positives = 75/157 (47%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V + + K DTL L + F N R++ K+
Sbjct: 232 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 291
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R +K+F+ G+ RVL+T ++ ARG+DV + LV+N DLP + Y H
Sbjct: 292 VSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 351
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ + ++ +++ +++ + I
Sbjct: 352 RIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQI 388
Score = 173 (66.0 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
Identities = 49/166 (29%), Positives = 84/166 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q +I I+K DV+ Q+ +G+GKT + + IL + D + ++
Sbjct: 46 FEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL----DTTL-------RE 94
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T + + ++P+REL +QI + I L G +GG N L + IV G
Sbjct: 95 TQV--LCLSPTRELAVQIQKVILAL-GDMMNVQCHVCIGGTNLGEDIRKLDYGQH-IVSG 150
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 151 TPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 196
Score = 52 (23.4 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +++SAT+P ++ + DP+ + K + + LE +
Sbjct: 201 QVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGI 239
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 187 (70.9 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 49/163 (30%), Positives = 82/163 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +QS A P +L+ D++ + TG+GKTL YL+P + L+ G
Sbjct: 262 FQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL-VLQPSLKGQRNRPGM- 319
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++ P+REL +Q+ E K + + GG NR Q E L+K I++
Sbjct: 320 -----LVLTPTRELALQVEGECCKYSYKGLRSVC--VYGGGNRDEQIEELKKGVD-IIIA 371
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ ++ + ++ +LVLDE D++L F + +I+
Sbjct: 372 TPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Score = 134 (52.2 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 387 ALKHYYCVTKLQHKVDTLRRCVHALDA-QTVIAFMNNTRQLKDAVFKLEARGMKAAELHG 445
++K VT + K ++ + ++ + VI F++ L + LHG
Sbjct: 460 SVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHG 519
Query: 446 DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
D + R L+ FK G+VR+L+ +L++RGLDV + V N D P + Y HR
Sbjct: 520 DREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHR 574
Score = 89 (36.4 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
G P+ K L +R +RQT+M SAT P SV R A+S+ +P++V
Sbjct: 405 GFEPQIMKILLDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIV 448
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 179 (68.1 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 38/157 (24%), Positives = 76/157 (48%)
Query: 381 DQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V K + K DTL L + F N R++ K+ +
Sbjct: 241 DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFT 300
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGD+ + R + +F++G+ RVL+T ++ ARG+DV + LV+N DLP + Y H
Sbjct: 301 VSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 360
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
R ++ + ++ +++ +++ + I
Sbjct: 361 RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQI 397
Score = 176 (67.0 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 47/166 (28%), Positives = 85/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q A+ IL+ DV+ Q+ +G+GKT L + V D SS
Sbjct: 55 FEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVV----DTSSR-------- 102
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++A+I++P+REL Q + I+ + G +GG N ++ ++ +V G
Sbjct: 103 -EVQALILSPTRELATQTEKTIQAI-GLHANIQAHACIGG-NSVGEDIRKLEHGVHVVSG 159
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ L T + L+LDE DE+LS F++ ++ + ++
Sbjct: 160 TPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYL 205
Score = 44 (20.5 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAK-NVIPLESM 354
Q +VSAT+P ++ + +P+ + K + + LE +
Sbjct: 210 QVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGI 248
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 211 (79.3 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 54/166 (32%), Positives = 82/166 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q P L D+V + TGSGKTLAYLLP + + + G+G
Sbjct: 110 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPI--- 165
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL Q V+++ G + + GGA + Q L + I +
Sbjct: 166 ----CLVLAPTRELAQQ-VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE-ICIA 219
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + AGK + C +LVLDE D +L F + +IV+ +
Sbjct: 220 TPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 265
Score = 150 (57.9 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 393 CV-TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
C+ ++ HK+ L + A I F+ R+ D ++ G A +HGD +
Sbjct: 316 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 375
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R L +F++G+ +L+ ++++RGLDV + V+N D P S Y HR
Sbjct: 376 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 424
Score = 64 (27.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G P+ K +R +RQT+M SAT P V + A + D
Sbjct: 234 NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDY 293
Query: 341 LLVQAKNV 348
+ + N+
Sbjct: 294 VQINVGNL 301
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 312 (114.9 bits), Expect = 2.8e-25, P = 2.8e-25
Identities = 108/463 (23%), Positives = 202/463 (43%)
Query: 97 KKSLEIESAPFAANSFXXXXXXXXXXXXXXXXX-FNVPTEVQSAAIPSILKNHDVVIQSY 155
K + + +S FA+ SF F PT VQ+ AIP IL DV++ +
Sbjct: 16 KDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAP 75
Query: 156 TGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL 215
TG+GKT+AYL P++ + K +G A+++ P+REL +Q+ ++KLL
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF-------ALVIVPTRELCLQVYETLEKLL 128
Query: 216 GPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEI--SAAGKLHTHGCRFLVL 273
++GG +++++ LRK +I++ TPGR+ + + A +H + R+++
Sbjct: 129 HRFHWIVPGYVMGGEKKAKEKARLRKGI-SILIATPGRLLDHLKNTASFVHKN-LRWVIF 186
Query: 274 DEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRA-ERQTIMVSATVPFSVIRA 332
DE D +L + + + +I++ +G SG N + + + + ++Q +++SAT+ V
Sbjct: 187 DEADSILELGYGKEIEQIIKLLG--SGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDL 244
Query: 333 ARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXXXXXXXXQAK--QADQSLPPALKH 390
A+ DP+++ N +++ A D +P L
Sbjct: 245 AKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQ 304
Query: 391 YY----CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKL------------E 434
Y C +L + L+ +Q V+ F + TR D + L E
Sbjct: 305 RYLRVPCGARLVALLSVLKNLFEREASQKVVVFFS-TRDAVDFHYSLLSEFQWPPNSETE 363
Query: 435 ARGMKAA-------ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
G K LHG + + R + FK + VL++ +++ARGLD + ++
Sbjct: 364 EEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQ 423
Query: 488 LDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQK 530
D P ++ Y HR + + E+ +K+++K
Sbjct: 424 YDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKK 466
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 214 (80.4 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 56/167 (33%), Positives = 95/167 (56%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T++QS AI LK DV+ + TGSGKTLA+L+PIL + + + S+ +G
Sbjct: 68 FKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENL--YRKQWSDHDG----- 120
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ A+I++P+REL +QI ++K+ G + ++GG +S +EE R + I+V
Sbjct: 121 --LGALIISPTRELAIQIFEVLRKI-GRYHTFSAGLVIGG--KSLKEEQERLGRMNILVC 175
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + + T+ + LVLDE D ++ F++ + I+ H+
Sbjct: 176 TPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHL 222
Score = 154 (59.3 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLKDAV--FKLEAR 436
A + P L+ +Y VT L K+DTL + + L ++T++ FM++ +Q++ F+
Sbjct: 259 ASSATPSKLQQHYVVTPLPQKLDTLWSFIRSNLKSKTIV-FMSSGKQVRFVYESFRHMQP 317
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
G+ LHG + R +F + VL + +++ARGLD D V+ LD P D+
Sbjct: 318 GIPLLHLHGRQKQGGRLDITTRFSQAQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADT 377
Query: 497 YAHR 500
Y HR
Sbjct: 378 YIHR 381
Score = 46 (21.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 22/98 (22%), Positives = 39/98 (39%)
Query: 246 IVVGTPGRIAEISAAGKLHTHGCR-FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
+V+G E G+++ C +L +D+ F +++ R +
Sbjct: 153 LVIGGKSLKEEQERLGRMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQ 212
Query: 305 EPKSALA--MRAERQTIMVSATVPFSVIRAARSWGHDP 340
+ A+ + ERQT++ SAT V AR DP
Sbjct: 213 KTVDAIIGHLPPERQTLLFSATQTKKVSDLARLSLQDP 250
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 224 (83.9 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 56/166 (33%), Positives = 87/166 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +QS P +K D++ + TGSGKTL+YLLP + V + ++G+G
Sbjct: 119 FTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA-QPMLAHGDGPI--- 174
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL +QI +E K G S K + GG + Q L+K IV+
Sbjct: 175 ----VLVLAPTRELAVQIQQEASKF-GSSSKIKTTCIYGGVPKGPQVRDLQKGVE-IVIA 228
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ + + +LVLDE D +L F + +IV H+
Sbjct: 229 TPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHI 274
Score = 135 (52.6 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+D ++ F++ + +L G A +HGD + R L +F++G+ ++
Sbjct: 342 MDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTAT 401
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+++ARGLDV + V+N D P Y HR
Sbjct: 402 DVAARGLDVKDVKYVINYDFPGSLEDYVHR 431
Score = 60 (26.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G +P+ K +R +RQT+ SAT P V + ++ + ++P
Sbjct: 243 NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNP 302
Query: 341 LLV 343
V
Sbjct: 303 YKV 305
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 220 (82.5 bits), Expect = 3.8e-25, Sum P(3) = 3.8e-25
Identities = 54/168 (32%), Positives = 91/168 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +QS P +L D++ + TGSGKTLA+ +P + V LK G G KK
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHV--LKKNKKIGGGS--KK 189
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ ++++P+REL +QI +++ P K++ + GG+++ Q A+R IV+G
Sbjct: 190 VNPTCLVLSPTRELAVQISDVLREAGEPCGLKSIC-VYGGSSKGPQISAIRSGVD-IVIG 247
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGR 297
TPGR+ ++ + L F+VLDE D +L F E + I+ + +
Sbjct: 248 TPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNK 295
Score = 136 (52.9 bits), Expect = 3.8e-25, Sum P(3) = 3.8e-25
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 433 LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT 492
L+ RG KA +HG+ + R+ +L FK G +LV +++ARGLD+ + ++V+N P
Sbjct: 386 LQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPL 445
Query: 493 DSIHYAHR 500
+ Y HR
Sbjct: 446 TTEDYVHR 453
Score = 43 (20.2 bits), Expect = 3.8e-25, Sum P(3) = 3.8e-25
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 316 RQTIMVSATVPFSVIRAARSWGHDP 340
RQ +M SAT P V + A+ + DP
Sbjct: 297 RQMVMFSATWPLDVHKLAQEF-MDP 320
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 208 (78.3 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 61/211 (28%), Positives = 95/211 (45%)
Query: 92 KAAGVKKSLEI----ESAPFAANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAAIPSILKN 147
+ A +++ LEI P SF F PT +QS P L
Sbjct: 215 QVAEIRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSG 274
Query: 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207
D+V + TGSGKTLAY+LP + +G + G G A+++AP+REL QI
Sbjct: 275 RDLVGIAQTGSGKTLAYMLPAIVHIGN-QPPIIRGEGPI-------ALVLAPTRELAQQI 326
Query: 208 ---VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLH 264
VR+ L P + + GG+++ Q L + +++ TPGR+ + +
Sbjct: 327 QSVVRDYGHLCKPEIRHTC--IFGGSSKVPQARDLDRGVE-VIIATPGRLIDFLENRNTN 383
Query: 265 THGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
C +LVLDE D +L F + +I+E +
Sbjct: 384 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 414
Score = 161 (61.7 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+I F+ +++D + + A G A +HGD + R + LK F+NG+ +L+ ++++R
Sbjct: 494 IIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASR 553
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHR 500
GLDV + V+N D P S +Y HR
Sbjct: 554 GLDVEDLQYVINYDYPNSSENYVHR 578
Score = 49 (22.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 147 NHDV--VIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGN 183
NH++ +++ T K L+ +L+++ P+K+ +NGN
Sbjct: 455 NHNIRQIVEICTEIEKPQR-LVCLLNEISPIKNSGNNGN 492
Score = 49 (22.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
N + + +++ R G P+ K +R +RQ +M SAT P V A + +D
Sbjct: 383 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLND 441
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 196 (74.1 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 48/158 (30%), Positives = 87/158 (55%)
Query: 136 VQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAV 195
+Q A + ++ D++ ++ TG+GKTLA+ +PI+ K+ +K + +G G++ + +
Sbjct: 142 IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI--IKFNAKHGRGKNP-----QCL 194
Query: 196 IVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIA 255
++AP+REL Q+ +E ++ D L GG +Q L + VGTPGRI
Sbjct: 195 VLAPTRELARQVEKEFRESAPSLDTIC---LYGGTPIGQQMRELNYGID-VAVGTPGRII 250
Query: 256 EISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
++ G L+ +F+VLDE D++L F E + I++
Sbjct: 251 DLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQ 288
Score = 159 (61.0 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 35/116 (30%), Positives = 57/116 (49%)
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
I F R F L A+ K LHGD+ + R TL F++G +LV +++ARG
Sbjct: 365 IVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARG 423
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQL 532
LDV DLV++ +LP ++ + HR + I + + VK ++K++
Sbjct: 424 LDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEV 479
Score = 50 (22.7 bits), Expect = 4.2e-25, Sum P(3) = 4.2e-25
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLV 343
A+RQ++M SAT+P + + + ++PL +
Sbjct: 292 AKRQSMMFSATMPSWIRSLTKKYLNNPLTI 321
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 187 (70.9 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
Identities = 40/121 (33%), Positives = 66/121 (54%)
Query: 381 DQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K +Y V K + K++TL L + F+N R++ K+ +R
Sbjct: 245 DELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 304
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT +Y H
Sbjct: 305 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
Query: 500 R 500
R
Sbjct: 365 R 365
Score = 171 (65.3 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
Identities = 48/164 (29%), Positives = 83/164 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q I K DV+ Q+ +G+GKT + +L ++ D S
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL----DFSL--------- 105
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI ++ + LG V VGG + R+++ + + +VVG
Sbjct: 106 IQCQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTS-VREDQRILQAGVHVVVG 163
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 164 TPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQ 207
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 215 (80.7 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
FN PT +Q IP I+ DVV S TGSGKT A+++P+L K LK + + G
Sbjct: 44 FNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK---LKRRDTTG------- 93
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
I A++V+P+REL +Q + +K+L G LVGG Q + +N P I++
Sbjct: 94 --IRALMVSPTRELALQTFKVVKEL-GRFTGLRCACLVGGDQIEEQFSTIHEN-PDILLA 149
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + L +++V DE D L F++ + ++ +
Sbjct: 150 TPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRI 195
Score = 136 (52.9 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
Identities = 40/177 (22%), Positives = 75/177 (42%)
Query: 381 DQSLPPALKHYYCVTKLQHKVDTLRRCVHALDA---QTVIAFMNNTRQLKDAVFKLEARG 437
D+ + L +C+ + K+ L +D QTV+ F + ++ V L G
Sbjct: 231 DEKVSDKLSMVFCMCRPDEKLFALLHLCRRMDRENKQTVV-FCATMKHVEYVVGILHRAG 289
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+ + ++ L AR ++KF + +LV +++ARG+D+ D V+NL P + +
Sbjct: 290 IDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLF 349
Query: 498 AHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQAC----EFTEGRLVIGK 550
HR +S+ E+ + + L PI E+ E +IG+
Sbjct: 350 VHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLGKPINFASDKSEYKEDETLIGR 406
Score = 58 (25.5 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 316 RQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
RQT++ SAT+P ++ A++ DP+LV+
Sbjct: 199 RQTLLFSATLPKMLVDFAKAGLTDPMLVR 227
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 191 (72.3 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
Identities = 51/165 (30%), Positives = 83/165 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP--ILSKVGPLKDKSSNGNGESG 187
F PT +QS A P +L+ D++ + TG+GKTL+YL+P I P+ NG G
Sbjct: 235 FQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPG--- 291
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++ P+REL +Q+ E K K + GG NR Q + + K I+
Sbjct: 292 ------MLVLTPTRELALQVGAECSKYSYKGLKSVC--IYGGGNRKGQIQDIMKGVD-II 342
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+ TPGR+ ++ ++ +LVLDE D++L F + +I+
Sbjct: 343 IATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 387
Score = 140 (54.3 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
Identities = 33/114 (28%), Positives = 56/114 (49%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQT-VIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +T + K + + +L + VI F++ D L +G+ LHGD
Sbjct: 434 VKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGD 493
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R L FK G+V++L+ +L++RGLDV++ V N + P + Y HR
Sbjct: 494 REQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHR 547
Score = 74 (31.1 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 307 KSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
K L +R +RQTIM SAT P ++ + A S+ +P+LV
Sbjct: 385 KILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLV 421
Score = 37 (18.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 384 LPPALKHYYCVTK 396
LPP K++Y TK
Sbjct: 164 LPPIHKNFYVETK 176
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 191 (72.3 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 51/165 (30%), Positives = 83/165 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP--ILSKVGPLKDKSSNGNGESG 187
F PT +QS A P +L+ D++ + TG+GKTL+YL+P I P+ NG G
Sbjct: 244 FQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPG--- 300
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++ P+REL +Q+ E K K + GG NR Q + + K I+
Sbjct: 301 ------MLVLTPTRELALQVGAECSKYSYKGLKSVC--IYGGGNRKGQIQDIMKGVD-II 351
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+ TPGR+ ++ ++ +LVLDE D++L F + +I+
Sbjct: 352 IATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 396
Score = 140 (54.3 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 33/114 (28%), Positives = 56/114 (49%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQT-VIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +T + K + + +L + VI F++ D L +G+ LHGD
Sbjct: 443 VKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGD 502
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R L FK G+V++L+ +L++RGLDV++ V N + P + Y HR
Sbjct: 503 REQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHR 556
Score = 74 (31.1 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 307 KSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
K L +R +RQTIM SAT P ++ + A S+ +P+LV
Sbjct: 394 KILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLV 430
Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 378 KQADQSLPPALKHYYCVTK 396
K AD LPP K++Y TK
Sbjct: 169 KWAD--LPPIHKNFYVETK 185
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 214 (80.4 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 52/165 (31%), Positives = 92/165 (55%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q +IP L D++ ++ G+GKT A+ +P+L K+ P N N
Sbjct: 144 FEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDP------NNNV----- 192
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVV 248
I+A+I+ P+REL +Q + K+L S +Q +V S +++ +R ++P ++V
Sbjct: 193 --IQAMILVPTRELALQTSQVCKEL---SKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLV 247
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
GTPGRI +++ G C LV+DE D+LLS F+ ++ +++
Sbjct: 248 GTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQ 292
Score = 145 (56.1 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 37/157 (23%), Positives = 66/157 (42%)
Query: 381 DQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKA 440
DQ + YY + + KV L L I F N+ +++ K+ G
Sbjct: 329 DQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSC 388
Query: 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+H + + R+ +F+NG R LV +L RG+D+ ++V+N D P S Y HR
Sbjct: 389 FYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHR 448
Query: 501 AXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
V++ + F + + +++L I+
Sbjct: 449 VGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIK 485
Score = 45 (20.9 bits), Expect = 8.3e-07, Sum P(3) = 8.3e-07
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 184 GESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQ 235
G G+ D+ V ++ M ++ E KLL + ++++L+ ++RQ
Sbjct: 248 GTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQ 299
Score = 37 (18.1 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 316 RQTIMVSATVPFSV 329
RQ +M SAT P +V
Sbjct: 298 RQFLMFSATFPVTV 311
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 218 (81.8 bits), Expect = 6.5e-25, Sum P(2) = 6.5e-25
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F+ PT +Q+ AIP L D++ + TGSGKT A+LLP+L ++ +D
Sbjct: 210 FSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERL-LFRDSEYRA------- 261
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
I +I+ P+REL +Q ++ L S+ + +VGG + QE LRK+ P +V+
Sbjct: 262 --IRVLILLPTRELALQCQSVMENLAQFSNITSCL-IVGGLSNKAQEVELRKS-PDVVIA 317
Query: 250 TPGRIAE--ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ + ++A G + L+LDE D LL F++ +++IVE
Sbjct: 318 TPGRLIDHLLNAHG-IGLDDLEILILDEADRLLDMGFKDEINKIVE 362
Score = 146 (56.5 bits), Expect = 6.5e-25, Sum P(2) = 6.5e-25
Identities = 33/117 (28%), Positives = 61/117 (52%)
Query: 388 LKHYYCVTKLQHKVDT----LRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAEL 443
L+ + K QH D L C + I F + +++ +KAAEL
Sbjct: 407 LEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAEL 466
Query: 444 HGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
HG+L + R +L++F++G+V L+ +++++RGLD+ V+N ++P + +Y HR
Sbjct: 467 HGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHR 523
Score = 75 (31.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 33/128 (25%), Positives = 62/128 (48%)
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
L+ G ++ +E + P +V+ TPGR+ + L+ HG + LD+++ L+
Sbjct: 294 LIVGGLSNKAQEVELRKSPDVVIATPGRLID----HLLNAHG---IGLDDLEILI---LD 343
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
EA R+++ +G + N K + RQT++ SAT+ V A+ P+ VQ
Sbjct: 344 EA-DRLLD-MGFKDEIN----KIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQV 397
Query: 346 KNVIPLES 353
++ + S
Sbjct: 398 DALMQVTS 405
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 204 (76.9 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 51/162 (31%), Positives = 93/162 (57%)
Query: 136 VQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG--ESGKKTDIE 193
+Q A + L+ D++ ++ TG+GKTLA+ +PI+ + L +++ + SG+
Sbjct: 128 IQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKR---LTEEAGDYTAFRRSGRLPKF- 183
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
+++AP+REL Q+ +EIK+ + + + GG + + Q+ AL + +VVGTPGR
Sbjct: 184 -LVLAPTRELAKQVEKEIKE---SAPYLSTVCVYGGVSYTIQQSALTRGVD-VVVGTPGR 238
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
I ++ L +LVLDE D++L+ F EA+ I+E++
Sbjct: 239 IIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Score = 152 (58.6 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 37/123 (30%), Positives = 61/123 (49%)
Query: 381 DQSLPPALKHYYCVTKLQHKVDTLRRC--VHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
D+ L +K Y T K L V+A +T++ T++ D V + +
Sbjct: 318 DEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIV--FTQTKRDADEVSLALSNSI 375
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
LHGD+ + R TL F+ G+ VLV ++++RGLD+ DLV++ +LP D +
Sbjct: 376 ATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFV 435
Query: 499 HRA 501
HR+
Sbjct: 436 HRS 438
Score = 50 (22.7 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPL 341
+RQ+++ SAT+P V + AR + +PL
Sbjct: 283 KRQSMLFSATMPTWVKKLARKYLDNPL 309
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 222 (83.2 bits), Expect = 7.3e-25, Sum P(2) = 7.3e-25
Identities = 72/248 (29%), Positives = 113/248 (45%)
Query: 106 PFAANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P N+F + PT VQ +IP ++ D++ + TGSGKT +L
Sbjct: 182 PEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFL 241
Query: 166 LPILSKV---GPLKDKSSNGNGESGK--KTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
PILS+ GP S G+ G+ K ++I+AP+REL QI E +K S
Sbjct: 242 FPILSQAYQNGPAAPPPSAA-GQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWV 300
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+ + GGA+ Q + + ++V TPGR+ ++ G++ ++L+LDE D +L
Sbjct: 301 RPCV-VYGGADIGSQLRQIERGCD-LLVATPGRLVDLIERGRISLVNIKYLILDEADRML 358
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
F + RIVE G + +RQT+M SAT P + AR + D
Sbjct: 359 DMGFEPQIRRIVE------GEDMPNVN-------DRQTLMFSATFPRDIQMLARDFLKDY 405
Query: 341 LLVQAKNV 348
+ + V
Sbjct: 406 VFLSVGRV 413
Score = 139 (54.0 bits), Expect = 7.3e-25, Sum P(2) = 7.3e-25
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 409 HALDAQTVIAFMNNTRQLKDAV--FKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
H T+I F+ T+++ DA+ F + R A +HGD + R L+ F++G +
Sbjct: 443 HGTTGLTLI-FVE-TKRMADALSEFLINQR-FPATAIHGDRTQRERERALEMFRSGRYPI 499
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
LV ++ARGLD+ V+N DLPTD Y HR
Sbjct: 500 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHR 533
>UNIPROTKB|F1LP27 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00949972 Ensembl:ENSRNOT00000066369 ArrayExpress:F1LP27
Uniprot:F1LP27
Length = 312
Score = 202 (76.2 bits), Expect = 7.6e-25, Sum P(3) = 7.6e-25
Identities = 41/114 (35%), Positives = 66/114 (57%)
Query: 388 LKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K +Y V + + K+DTL L + F+N R++ K+ AR + LHGD
Sbjct: 152 IKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGD 211
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y HR
Sbjct: 212 MDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 265
Score = 117 (46.2 bits), Expect = 7.6e-25, Sum P(3) = 7.6e-25
Identities = 31/96 (32%), Positives = 47/96 (48%)
Query: 200 SRELGMQIVREIKKLLGPSDKKAV--QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEI 257
SREL + K +L D +GG N + + L+ P IVVGTPGR+ ++
Sbjct: 12 SRELYNYAFKIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDM 71
Query: 258 SAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
L + VLDE DE+LS F++ ++ I +
Sbjct: 72 LNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 107
Score = 56 (24.8 bits), Expect = 7.6e-25, Sum P(3) = 7.6e-25
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 114 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGI 152
Score = 39 (18.8 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 131 KKFMRDPIRILVKKEELTLEGI 152
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 217 (81.4 bits), Expect = 7.9e-25, Sum P(3) = 7.9e-25
Identities = 55/163 (33%), Positives = 83/163 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ VPT +Q IP IL+ DVV + TGSGKT +LLP+ + LK S +G
Sbjct: 56 YKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFER---LKAPSPSG------- 105
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I++P+REL +Q ++ K+L G ++GG Q AL +N P I++
Sbjct: 106 --ARALILSPTRELALQTLKFTKEL-GKFTGLKTALVLGGDKMEDQFAALHEN-PDIIIA 161
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ ++ L ++V DE D L F E + I+
Sbjct: 162 TPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIL 204
Score = 136 (52.9 bits), Expect = 7.9e-25, Sum P(3) = 7.9e-25
Identities = 37/125 (29%), Positives = 60/125 (48%)
Query: 404 LRRCVHALDAQTVI--AFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
L RCV QTV+ A ++T LK+ L ++G+ ++ L + AR + KF +
Sbjct: 269 LLRCVVKPQDQTVVFVATKHHTEYLKEL---LTSQGICCTHIYSSLDQTARKINIAKFAH 325
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSIC---E 518
G+ +VL+ +++ARGLD+ D V+N P S + HR S+ E
Sbjct: 326 GKCQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDE 385
Query: 519 EPEVF 523
P +F
Sbjct: 386 MPYIF 390
Score = 53 (23.7 bits), Expect = 7.9e-25, Sum P(3) = 7.9e-25
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQ 344
QT++ SAT+P ++ AR+ +P+L++
Sbjct: 212 QTVLFSATLPKLLVEFARAGLTEPMLIR 239
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 201 (75.8 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 49/164 (29%), Positives = 89/164 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AIP + D++ ++ G+GKT A+++P L KV P +K
Sbjct: 66 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNK----------- 114
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVV 248
I+A+I+ P+REL +Q ++ + LG + GG N +++ LR N+ I+V
Sbjct: 115 --IQALIMVPTRELALQ-TSQVVRTLGKHCGISCMVTTGGTNL--RDDILRLNETVHILV 169
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
GTPGR+ ++++ C ++DE D++LS +F+ + +I+
Sbjct: 170 GTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQIL 213
Score = 157 (60.3 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 38/169 (22%), Positives = 75/169 (44%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
+ YY + + K+ L L I F N+T +++ K+ G H +
Sbjct: 258 ITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARM 317
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
+ R+ +F+ G+VR LV ++L RG+D+ ++V+N D P + Y HR
Sbjct: 318 KQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 377
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEKTL 556
+++ + F + K++++L I A T + + E ++T+
Sbjct: 378 GHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLYVAENDETV 426
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 228 (85.3 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
Identities = 60/163 (36%), Positives = 87/163 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +QS P +L D + S TGSGKTLA+LLP L + + N E K
Sbjct: 104 FEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEK-NDEEQKP 162
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ ++++P+REL QI E+KK + K+V L GG +R Q EA R IV+
Sbjct: 163 SPF-VLVLSPTRELAQQIEGEVKKY-SYNGYKSVC-LYGGGSRPEQVEACRGGVE-IVIA 218
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ ++S G + ++VLDE D +L F A+ RI+
Sbjct: 219 TPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRIL 261
Score = 127 (49.8 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 436 RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSI 495
+G+ + LHG + R +L ++GEV++LV +L++RG+DV + V+N D P D
Sbjct: 361 KGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIE 420
Query: 496 HYAHR 500
Y HR
Sbjct: 421 EYVHR 425
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 218 (81.8 bits), Expect = 8.2e-25, Sum P(2) = 8.2e-25
Identities = 60/164 (36%), Positives = 88/164 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ AIP +L+ D++ + TGSGKT A+ PI+S G +KD+ + G +T
Sbjct: 182 PTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS--GIMKDQ--HVQRPRGSRTVY 237
Query: 193 E-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251
AVI++P+REL QI E KK + K V GG ++Q L + I+V TP
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAY-GGTPINQQLRELERGVD-ILVATP 295
Query: 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
GR+ ++ ++ RFL LDE D +L F + +IVE +
Sbjct: 296 GRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 339
Score = 146 (56.5 bits), Expect = 9.5e-17, Sum P(2) = 9.5e-17
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
AVI++P+REL QI E KK + K V GG ++Q L + I+V TPGR
Sbjct: 240 AVILSPTRELASQIHDEAKKFSYQTGVKVVVAY-GGTPINQQLRELERGVD-ILVATPGR 297
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMR 313
+ ++ ++ RFL LDE D +L F + +IVE + P P R
Sbjct: 298 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM-----P--P------R 344
Query: 314 AERQTIMVSATVPFSVIRAA 333
RQT++ SAT P + R A
Sbjct: 345 GVRQTLLFSATFPREIQRLA 364
Score = 142 (55.0 bits), Expect = 8.2e-25, Sum P(2) = 8.2e-25
Identities = 37/109 (33%), Positives = 50/109 (45%)
Query: 396 KLQHKVDTLR----RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
K H +D L + A T++ F+ R L G A +HGD +
Sbjct: 398 KRSHLMDLLHAQRENGIQGKQALTLV-FVETKRGADSLENWLCINGFPATSIHGDRTQQE 456
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R LK FK+G +LV +++ARGLD+ VVN DLP D Y HR
Sbjct: 457 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 505
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 182 (69.1 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 50/163 (30%), Positives = 81/163 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +QS A P IL+ D++ + TG+GKTL+YL+P V S +G
Sbjct: 261 FQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRARNGPG 320
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++ P+REL +Q+ E K K + GG +R Q + L K I++
Sbjct: 321 M----LVLTPTRELALQVEAECSKYSYKGLKSVC--VYGGGDRDGQIKDLLKGVD-IIIA 373
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ ++ ++ +LVLDE D++L F + +I+
Sbjct: 374 TPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKIL 416
Score = 133 (51.9 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 34/114 (29%), Positives = 54/114 (47%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQT-VIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+K VT K ++ + ++ + VI F++ L R + LHG+
Sbjct: 463 VKQNIIVTTEDEKRSHIQTFIESMSPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGN 522
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R LK FK G+VR+L+ +L++RGLDV + V N D P + Y HR
Sbjct: 523 REQGDRERALKNFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHR 576
Score = 90 (36.7 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
G P+ K L +R +RQT+M SAT P++V R A+S+ +P++V
Sbjct: 407 GFEPQIMKILLDIRPDRQTVMTSATWPYAVRRLAQSYLKEPMIV 450
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 224 (83.9 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 57/160 (35%), Positives = 95/160 (59%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
TE+Q+ +IP L+ HDV+ + TGSGKTLA+L+P++ K+ ++K + +G +
Sbjct: 65 TEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKL--YREKWTEFDG-------LG 115
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
A+I++P+REL MQI + K+ G + ++GG + + E R ++ I++GTPGR
Sbjct: 116 ALIISPTRELAMQIYEVLTKI-GSHTSFSAGLVIGGKDVKFELE--RISRINILIGTPGR 172
Query: 254 IAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
I + + A L+T + LVLDE D L F++ + IV
Sbjct: 173 ILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIV 212
Score = 138 (53.6 bits), Expect = 8.9e-25, Sum P(2) = 8.9e-25
Identities = 36/122 (29%), Positives = 58/122 (47%)
Query: 381 DQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA--VFKLEARGM 438
+ S P L+ +Y L K+D L + + +I F+++++Q+ F+ G+
Sbjct: 259 EASTPETLQQFYIEVPLADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGI 318
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
LHG + AR+ TL KF + L ++ ARG+D D VV +D P D Y
Sbjct: 319 SLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYI 378
Query: 499 HR 500
HR
Sbjct: 379 HR 380
Score = 47 (21.6 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 272 VLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALA--MRAERQTIMVSATVPFSV 329
+L +D+ + N +++ R ++ A+ + RQT++ SAT SV
Sbjct: 173 ILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSV 232
Query: 330 IRAAR 334
AR
Sbjct: 233 ADLAR 237
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 202 (76.2 bits), Expect = 9.5e-25, Sum P(2) = 9.5e-25
Identities = 57/165 (34%), Positives = 85/165 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
++ PT +QS AIP L+ HD++ + TGSGKT A+ +PIL+++ D+
Sbjct: 101 YSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW--HDQEP--------- 149
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A I+AP+REL QI +E LG +VGG N Q L + KP I++
Sbjct: 150 --YYACILAPTRELAQQI-KETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR-KPHIIIA 205
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ + + +FLV+DE D LL F + RI++
Sbjct: 206 TPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILK 250
Score = 155 (59.6 bits), Expect = 9.5e-25, Sum P(2) = 9.5e-25
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 414 QTVIAFMN---NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+T+I F N +L LE A LHGDL + R +L FK G+ +LV
Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLE---FSATALHGDLNQNQRMGSLDLFKAGKRSILVAT 378
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQK 530
+++ARGLD+ D+VVN D+P DS Y HR +S+ + ++ ++ ++++
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 531 QL 532
L
Sbjct: 439 VL 440
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 188 (71.2 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 50/162 (30%), Positives = 79/162 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F+ PT+VQ+ AIP L DV+ + TG+GKT A+++P L L D G +
Sbjct: 23 FSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY---LLDFPRRKAGPA--- 76
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+I+ P+REL MQ+ + + L + + + + GG + L + IVV
Sbjct: 77 ---RILILTPTRELAMQVAEQAQAL-AKNTRLNIFTITGGVQYQEHADILATTQD-IVVA 131
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ E A + +L+LDE D +L F + R+
Sbjct: 132 TPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
Score = 167 (63.8 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 36/154 (23%), Positives = 78/154 (50%)
Query: 391 YYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKL 450
Y+ + HKV+ L++ + A+ I F+ +L D +LE + A + G++ +
Sbjct: 225 YHRADDMPHKVELLKKILTE-QAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQD 283
Query: 451 ARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXX 510
R+ + +F+ G+V +L+ +++ARG+DV + V+N DLP + Y HR
Sbjct: 284 RRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKK 343
Query: 511 XXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544
+S+ E + ++ ++++ + ++ F +G
Sbjct: 344 GIAISLVEAHDQPMMARVERYIKEEVKE-RFIDG 376
Score = 37 (18.1 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 272 VLDEIDELLSFNFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATV 325
+L+ ID F+ R I++ R G P + + R +QT++ SAT+
Sbjct: 136 LLEYIDAE-RFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSATL 190
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 188 (71.2 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 50/162 (30%), Positives = 79/162 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F+ PT+VQ+ AIP L DV+ + TG+GKT A+++P L L D G +
Sbjct: 23 FSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY---LLDFPRRKAGPA--- 76
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+I+ P+REL MQ+ + + L + + + + GG + L + IVV
Sbjct: 77 ---RILILTPTRELAMQVAEQAQAL-AKNTRLNIFTITGGVQYQEHADILATTQD-IVVA 131
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
TPGR+ E A + +L+LDE D +L F + R+
Sbjct: 132 TPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
Score = 167 (63.8 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 36/154 (23%), Positives = 78/154 (50%)
Query: 391 YYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKL 450
Y+ + HKV+ L++ + A+ I F+ +L D +LE + A + G++ +
Sbjct: 225 YHRADDMPHKVELLKKILTE-QAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQD 283
Query: 451 ARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXX 510
R+ + +F+ G+V +L+ +++ARG+DV + V+N DLP + Y HR
Sbjct: 284 RRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKK 343
Query: 511 XXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544
+S+ E + ++ ++++ + ++ F +G
Sbjct: 344 GIAISLVEAHDQPMMARVERYIKEEVKE-RFIDG 376
Score = 37 (18.1 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 272 VLDEIDELLSFNFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATV 325
+L+ ID F+ R I++ R G P + + R +QT++ SAT+
Sbjct: 136 LLEYIDAE-RFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSATL 190
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 185 (70.2 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 40/121 (33%), Positives = 65/121 (53%)
Query: 381 DQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K +Y V K K++TL L + F+N R++ K+ +R
Sbjct: 245 DELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 304
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N DLPT +Y H
Sbjct: 305 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLH 364
Query: 500 R 500
R
Sbjct: 365 R 365
Score = 169 (64.5 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 47/164 (28%), Positives = 83/164 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q I K DV+ Q+ +G+GKT + +L ++ D +
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL----DYAL--------- 105
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI ++ + LG V VGG + R+++ + + +VVG
Sbjct: 106 LQCQALVLAPTRELAQQI-EKVMRALGDYQGVKVHACVGGTS-VREDQRILQAGVHVVVG 163
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 164 TPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQ 207
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 224 (83.9 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 58/166 (34%), Positives = 87/166 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +QS A P LK D++ + TGSGKTLA+LLP + + + +G
Sbjct: 404 FPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINA-QPVLREDDGPI--- 459
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL +QI E K G S + GGA++ Q AL+K IV+
Sbjct: 460 ----VLVLAPTRELALQIQEETNKFGGTSQISNTC-VYGGASKHTQVAALKKGVE-IVIA 513
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ +I +GK + +LVLDE D +L F + +I+ +
Sbjct: 514 TPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI 559
Score = 137 (53.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 414 QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473
+ VI F + + D L+ G K+ +HG+ + R L +FKNG V +++ +++
Sbjct: 630 EKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVA 689
Query: 474 ARGLDVAECDLVVNLDLPTDSIHYAHR 500
+RGLD+ + VVN D P Y HR
Sbjct: 690 SRGLDIKDIKYVVNYDFPNTIEVYIHR 716
Score = 61 (26.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G P+ K +R +RQT+M SAT P V A + D
Sbjct: 528 NLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAHDFLTDH 587
Query: 341 LLV 343
+ V
Sbjct: 588 IQV 590
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 191 (72.3 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 54/165 (32%), Positives = 84/165 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +QS AIP L+ D++ + TGSGKT A+ +PIL + +
Sbjct: 143 FTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYF--------- 193
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++AP+REL QI ++ LG S +VGG + Q L + KP ++V
Sbjct: 194 ----ALVLAPTRELTFQI-KDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR-KPHVIVA 247
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGRI + + ++LV+DE D LL +F A+ +I++
Sbjct: 248 TPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILK 292
Score = 167 (63.8 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 35/128 (27%), Positives = 62/128 (48%)
Query: 408 VHALD---AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+H L+ +++I F + G A LHG L + R +L KFK+ +
Sbjct: 354 IHLLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQA 413
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFV 524
+LV +++ARGLD+ D+V+N D+PTDS Y HR +S+ + ++ +
Sbjct: 414 NILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEM 473
Query: 525 VKKMQKQL 532
+++ L
Sbjct: 474 YLRIESVL 481
Score = 52 (23.4 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 22/103 (21%), Positives = 43/103 (41%)
Query: 243 KPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGAN 302
KP ++V TPGRI +D ++ F+ + + +++ R +
Sbjct: 241 KPHVIVATPGRI------------------MDHLEHTKGFSLKNLKYLVMDEADRLLDMD 282
Query: 303 --PREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
P K + +R T + SAT+ + + R+ H+P+ V
Sbjct: 283 FGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRV 325
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 187 (70.9 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 58/171 (33%), Positives = 81/171 (47%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGS-GKTLAYLLPILSKVGPLKDKSSNGNGESGK 188
F PT +Q A IP L D+ + TG+ GKT A++LP+L + L K +
Sbjct: 200 FKQPTPIQKACIPVGLLGKDICACAATGTVGKTAAFILPVLER---LIYKP--------R 248
Query: 189 KTDIEAVIV-APSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ I V+V P+RELG+Q V + K L VGG + QE ALR P I+
Sbjct: 249 QAPITRVLVLVPTRELGIQ-VHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSG-PDIL 306
Query: 248 VGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGR 297
+ TPGR+ + + H L+LDE D +L F E M I+ R
Sbjct: 307 IATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSR 357
Score = 176 (67.0 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 39/142 (27%), Positives = 71/142 (50%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
V+ F +Q L G++ ELHG+L + R L++FK+ ++ +LV +++AR
Sbjct: 429 VMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILVATDVAAR 488
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVP 535
GLD+ V+N +P + HY HR VS+ E E ++K++ K P
Sbjct: 489 GLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKTP 548
Query: 536 IQACEFTEGRLVIGKEEEKTLE 557
++A + ++ +E+ + LE
Sbjct: 549 VKARILPQDVILKFREKIENLE 570
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 183 (69.5 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 49/166 (29%), Positives = 87/166 (52%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
P+++Q AA+P L+ DV+ + TGSGKT A+ +P+L L D
Sbjct: 67 PSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQS---LLDHPQA----------F 113
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
+++ P+REL QI ++ + L G +VGG + + Q AL + +P I+V TPG
Sbjct: 114 FCLVLTPTRELAFQIGQQFEAL-GSGIGLIAAVIVGGVDMAAQAMALAR-RPHIIVATPG 171
Query: 253 RIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGR 297
R+ + + + +FL++DE D +L+ +F + +I++ + R
Sbjct: 172 RLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPR 217
Score = 174 (66.3 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 43/171 (25%), Positives = 77/171 (45%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
LK +Y ++K L ++ + I F L GM+A LHG +
Sbjct: 258 LKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQM 317
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
+ R +L KFK+ +LV +++ARGLD+ D+V+N D+P+ S Y HR
Sbjct: 318 SQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARA 377
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEKTLEA 558
+++ + +V +K++ L + + E +++ E+T EA
Sbjct: 378 GRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKCVENEVMV--LVERTQEA 426
Score = 47 (21.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 272 VLDEIDELLSFNFREAMHRIVEHVGR--RSGANPREPKSALAMRAERQTIMVSATVPFSV 329
++D ++ FN + I++ R K + ER+T + SAT+ V
Sbjct: 173 LVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLFSATMTKKV 232
Query: 330 IRAARSWGHDPLLVQAKN 347
+ R+ DP V +
Sbjct: 233 SKLERASLRDPARVSVSS 250
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 217 (81.4 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 70/202 (34%), Positives = 107/202 (52%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
T +Q +IP I+ D++ + TGSGKT A+LLPIL+ + +K S+ ++ K+ E
Sbjct: 310 TPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHL-MVKGVESSAF-QTLKEP--E 365
Query: 194 AVIVAPSRELGMQIVREIKKL-LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
A+IVAP+REL QI + +K G + V + GG + + + I+ TPG
Sbjct: 366 AIIVAPTRELINQIYLDARKFSYGTCVRPVV--IYGGTQMFHSLKQISEGCN-ILCATPG 422
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAM 312
R+ ++ K+ R+LVLDE D +L FRE +E++ + SG +E
Sbjct: 423 RLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFRED----IENLLKSSGMPSKE------- 471
Query: 313 RAERQTIMVSATVPFSVIRAAR 334
ERQT+M SAT P S+ AR
Sbjct: 472 --ERQTLMFSATFPSSIQSLAR 491
Score = 143 (55.4 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 31/103 (30%), Positives = 54/103 (52%)
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKD--AVFKLEARGMKAAELHGDLGKLARSTTLK 457
K D L + + ++ + F+ T++ D A F + + + + +HGD + R T L+
Sbjct: 525 KKDKLMEILQEIGSERTMVFVK-TKKKADFIATFLCQEK-VPSTSIHGDREQKERETALR 582
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
F+ G+ V+V ++ARGLD+ V+N D+P D Y HR
Sbjct: 583 DFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHR 625
Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 178 KSSNGNGESGKKTDIEAVIVAPSRELG 204
K SNG ESG T+ + + +R G
Sbjct: 106 KDSNGKQESGDFTNDDNRTIDDNRRRG 132
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 192 (72.6 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 48/158 (30%), Positives = 85/158 (53%)
Query: 136 VQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAV 195
+Q A + ++ D++ ++ TG+GKTLA+ +PI+ K+ +K + +G G + +
Sbjct: 130 IQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI--IKYNAKHGRGRNPL-----CL 182
Query: 196 IVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIA 255
++AP+REL Q+ +E ++ D L GG +Q L + VGTPGR+
Sbjct: 183 VLAPTRELARQVEKEFRESAPSLDTIC---LYGGTPIGQQMRQLDYGVD-VAVGTPGRVI 238
Query: 256 EISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
++ G L+ +F+VLDE D++L F E + I+E
Sbjct: 239 DLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILE 276
Score = 161 (61.7 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 38/155 (24%), Positives = 72/155 (46%)
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCV--HALDAQTVIAFMNNTRQLKDAVFKLEARG 437
+DQ L + Y + + + V HA + ++ T++ D + AR
Sbjct: 315 SDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIV--FTQTKRDADRLSYALARS 372
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
K LHGD+ + R TL F++G +LV +++ARGLDV DL+++ +LP ++ +
Sbjct: 373 FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETF 432
Query: 498 AHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQL 532
HR + I + + VK +++++
Sbjct: 433 VHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREV 467
Score = 47 (21.6 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPLLV 343
+RQ++M SAT+P + + + ++PL V
Sbjct: 281 KRQSMMFSATMPSWIRSLTKKYLNNPLTV 309
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 194 (73.4 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 47/166 (28%), Positives = 85/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
++ PTE+Q +IP IL HDV+ ++ TG+GKT A+ LPIL ++ ++ K
Sbjct: 25 YDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPC----------K 74
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++ A+++ P+REL Q+ + G + GG + +Q L+ I++
Sbjct: 75 PELRALVLTPTRELAQQVHKSFCHY-GQFTDVTIGIAYGGVSTKKQISELKVGVD-ILIA 132
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ + LV DE D +L F+E + +I +++
Sbjct: 133 TPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYL 178
Score = 158 (60.7 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 35/122 (28%), Positives = 64/122 (52%)
Query: 416 VIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
V+ F T+Q D + K + G+K+ +HGD + AR L +FK G+VR L+ +++A
Sbjct: 249 VLVF-TRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAA 307
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAV 534
RG+D+ V+N +LP ++ Y HR VS+ E +++ +++ L +
Sbjct: 308 RGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLDI 367
Query: 535 PI 536
+
Sbjct: 368 QL 369
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 194 (73.4 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 47/166 (28%), Positives = 85/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
++ PTE+Q +IP IL HDV+ ++ TG+GKT A+ LPIL ++ ++ K
Sbjct: 25 YDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPC----------K 74
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++ A+++ P+REL Q+ + G + GG + +Q L+ I++
Sbjct: 75 PELRALVLTPTRELAQQVHKSFCHY-GQFTDVTIGIAYGGVSTKKQISELKVGVD-ILIA 132
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ + LV DE D +L F+E + +I +++
Sbjct: 133 TPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYL 178
Score = 158 (60.7 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 35/122 (28%), Positives = 64/122 (52%)
Query: 416 VIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
V+ F T+Q D + K + G+K+ +HGD + AR L +FK G+VR L+ +++A
Sbjct: 249 VLVF-TRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAA 307
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAV 534
RG+D+ V+N +LP ++ Y HR VS+ E +++ +++ L +
Sbjct: 308 RGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLDI 367
Query: 535 PI 536
+
Sbjct: 368 QL 369
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 208 (78.3 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 53/166 (31%), Positives = 82/166 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q P L D+V + TGSGKTLAYLLP + + + G+G
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPI--- 167
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL Q V+++ G + + GGA + Q L + I +
Sbjct: 168 ----CLVLAPTRELAQQ-VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE-ICIA 221
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + +GK + C +LVLDE D +L F + +IV+ +
Sbjct: 222 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267
Score = 150 (57.9 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 393 CV-TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
C+ ++ HK+ L + A I F+ R+ D ++ G A +HGD +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R L +F++G+ +L+ ++++RGLDV + V+N D P S Y HR
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 426
Score = 62 (26.9 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G P+ K +R +RQT+M SAT P V + A + D
Sbjct: 236 NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDY 295
Query: 341 LLVQAKNV 348
+ N+
Sbjct: 296 TQINVGNL 303
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 208 (78.3 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 53/166 (31%), Positives = 82/166 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q P L D+V + TGSGKTLAYLLP + + + G+G
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPI--- 167
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL Q V+++ G + + GGA + Q L + I +
Sbjct: 168 ----CLVLAPTRELAQQ-VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE-ICIA 221
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + +GK + C +LVLDE D +L F + +IV+ +
Sbjct: 222 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267
Score = 150 (57.9 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 393 CV-TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
C+ ++ HK+ L + A I F+ R+ D ++ G A +HGD +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R L +F++G+ +L+ ++++RGLDV + V+N D P S Y HR
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 426
Score = 62 (26.9 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G P+ K +R +RQT+M SAT P V + A + D
Sbjct: 236 NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDY 295
Query: 341 LLVQAKNV 348
+ N+
Sbjct: 296 TQINVGNL 303
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 208 (78.3 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 53/166 (31%), Positives = 82/166 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q P L D+V + TGSGKTLAYLLP + + + G+G
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPI--- 167
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL Q V+++ G + + GGA + Q L + I +
Sbjct: 168 ----CLVLAPTRELAQQ-VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE-ICIA 221
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + +GK + C +LVLDE D +L F + +IV+ +
Sbjct: 222 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 267
Score = 150 (57.9 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 393 CV-TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
C+ ++ HK+ L + A I F+ R+ D ++ G A +HGD +
Sbjct: 318 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 377
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R L +F++G+ +L+ ++++RGLDV + V+N D P S Y HR
Sbjct: 378 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 426
Score = 62 (26.9 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G P+ K +R +RQT+M SAT P V + A + D
Sbjct: 236 NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDY 295
Query: 341 LLVQAKNV 348
+ N+
Sbjct: 296 TQINVGNL 303
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 189 (71.6 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 54/167 (32%), Positives = 82/167 (49%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q +P L+ D++ ++ TG+GKT ++LLP L L D +G++
Sbjct: 24 PTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH---LIDFPRRYSGQA------ 74
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
+I+ P+REL QI R L + + GG + QEEAL+ N I+V TPG
Sbjct: 75 RVLILTPTRELASQIHRYACHLATDQGLN-IAIITGGVPYAPQEEALKGNID-ILVATPG 132
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI-VEHVGRR 298
R+ E GK L++DE D +L F + I +E GR+
Sbjct: 133 RLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRK 179
Score = 163 (62.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 40/143 (27%), Positives = 70/143 (48%)
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARST 454
HK L + D + I F+ TR D V LE + G+ A + GD+ + R
Sbjct: 231 HKFALLCHLLKQEDVKRAIVFVK-TR---DVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQ 286
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVV 514
L +F GEV VL+ +++ARG+D+ + V+N D+P + Y HR +
Sbjct: 287 ALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346
Query: 515 SICEEPEVFVVKKMQKQLAVPIQ 537
S+ E ++ +V K+++ + P++
Sbjct: 347 SLAEAHDMRIVGKIERYIEQPLK 369
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 189 (71.6 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 54/167 (32%), Positives = 82/167 (49%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q +P L+ D++ ++ TG+GKT ++LLP L L D +G++
Sbjct: 24 PTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH---LIDFPRRYSGQA------ 74
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
+I+ P+REL QI R L + + GG + QEEAL+ N I+V TPG
Sbjct: 75 RVLILTPTRELASQIHRYACHLATDQGLN-IAIITGGVPYAPQEEALKGNID-ILVATPG 132
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI-VEHVGRR 298
R+ E GK L++DE D +L F + I +E GR+
Sbjct: 133 RLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRK 179
Score = 163 (62.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 40/143 (27%), Positives = 70/143 (48%)
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARST 454
HK L + D + I F+ TR D V LE + G+ A + GD+ + R
Sbjct: 231 HKFALLCHLLKQEDVKRAIVFVK-TR---DVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQ 286
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVV 514
L +F GEV VL+ +++ARG+D+ + V+N D+P + Y HR +
Sbjct: 287 ALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346
Query: 515 SICEEPEVFVVKKMQKQLAVPIQ 537
S+ E ++ +V K+++ + P++
Sbjct: 347 SLAEAHDMRIVGKIERYIEQPLK 369
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 200 (75.5 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 51/164 (31%), Positives = 81/164 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q+ AIP IL+ HDV+ + TG+GKT AY LP++ K+ S G
Sbjct: 21 YQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKM------LSTPRGR---- 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +++AP+REL QI + L G + + GG N +Q LR +VV
Sbjct: 71 --VRTLVLAPTRELACQIAESFRSL-GQRARIRECSIYGGVNMDQQIRRLRSGVD-VVVA 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
PGR+ + G + G L++DE D + F+ + I++
Sbjct: 127 CPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILK 170
Score = 150 (57.9 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 36/156 (23%), Positives = 68/156 (43%)
Query: 382 QSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAA 441
Q+ ++ H K K L + + ++V+ F ++ ++ G A
Sbjct: 208 QAPASSVSHSVYPVKNHQKTPLLIEILKTTETKSVLIFARTKYGAENLADEISRAGFTTA 267
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501
L G+L + R ++ F+ G ++LV +++ARGLD+ V+N D+P Y HR
Sbjct: 268 SLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHISHVINYDMPDTPEDYTHRI 327
Query: 502 XXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
+S+ + +V+ +QK + PIQ
Sbjct: 328 GRTGRFDRTGQALSLVTGRDGDMVRDIQKLINSPIQ 363
Score = 45 (20.9 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354
QT++ SAT+P V + +P+ +Q P S+
Sbjct: 177 QTLLFSATMPPEVRKLTLETQTNPVTIQIGTQAPASSV 214
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 183 (69.5 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 48/163 (29%), Positives = 84/163 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q IP+++ +D++ + TG+GKT A+ LPI++K G ++K K
Sbjct: 22 YKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFG--RNKIDI----KAKS 75
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T ++I+ P+REL QI++ I K + + GG R Q +++ I+V
Sbjct: 76 T--RSLILTPTRELASQIMQNIDDYSDGLGLKT-KVVYGGVGRQAQVDSIELGLD-ILVA 131
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ ++ G ++ VLDE D +L F + + I+
Sbjct: 132 TPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSII 174
Score = 158 (60.7 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 40/141 (28%), Positives = 67/141 (47%)
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLK 457
+KV L + D + V+ F T+ D + K LE + AA LH + R L+
Sbjct: 231 NKVPLLFNILTKADYEKVLIFCK-TKYGADIIVKALEKASITAASLHSGKTQAVREEALQ 289
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSIC 517
FK+ +RVLV +++ARG+DV LV+N +LP D +Y HR +S
Sbjct: 290 NFKDSTLRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFA 349
Query: 518 EEPEVFVVKKMQKQLA--VPI 536
E ++ + ++ + +P+
Sbjct: 350 VENDIRQLTNIENSIGQVIPV 370
Score = 47 (21.6 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 316 RQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
RQT++ SAT+P + A + DP +Q
Sbjct: 181 RQTLLFSATMPAEIEILAEAILTDPTKIQ 209
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 208 (78.3 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 53/166 (31%), Positives = 82/166 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q P L D+V + TGSGKTLAYLLP + + + G+G
Sbjct: 191 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPI--- 246
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL Q V+++ G + + GGA + Q L + I +
Sbjct: 247 ----CLVLAPTRELAQQ-VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE-ICIA 300
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + +GK + C +LVLDE D +L F + +IV+ +
Sbjct: 301 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 346
Score = 150 (57.9 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 393 CV-TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
C+ ++ HK+ L + A I F+ R+ D ++ G A +HGD +
Sbjct: 397 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 456
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R L +F++G+ +L+ ++++RGLDV + V+N D P S Y HR
Sbjct: 457 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 505
Score = 62 (26.9 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G P+ K +R +RQT+M SAT P V + A + D
Sbjct: 315 NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDY 374
Query: 341 LLVQAKNV 348
+ N+
Sbjct: 375 TQINVGNL 382
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 208 (78.3 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 53/166 (31%), Positives = 82/166 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q P L D+V + TGSGKTLAYLLP + + + G+G
Sbjct: 191 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPI--- 246
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL Q V+++ G + + GGA + Q L + I +
Sbjct: 247 ----CLVLAPTRELAQQ-VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE-ICIA 300
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + +GK + C +LVLDE D +L F + +IV+ +
Sbjct: 301 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 346
Score = 150 (57.9 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 393 CV-TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
C+ ++ HK+ L + A I F+ R+ D ++ G A +HGD +
Sbjct: 397 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 456
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R L +F++G+ +L+ ++++RGLDV + V+N D P S Y HR
Sbjct: 457 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 505
Score = 62 (26.9 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G P+ K +R +RQT+M SAT P V + A + D
Sbjct: 315 NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDY 374
Query: 341 LLVQAKNV 348
+ N+
Sbjct: 375 TQINVGNL 382
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 208 (78.3 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 53/166 (31%), Positives = 82/166 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q P L D+V + TGSGKTLAYLLP + + + G+G
Sbjct: 193 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPI--- 248
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL Q V+++ G + + GGA + Q L + I +
Sbjct: 249 ----CLVLAPTRELAQQ-VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE-ICIA 302
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + +GK + C +LVLDE D +L F + +IV+ +
Sbjct: 303 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 348
Score = 150 (57.9 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 393 CV-TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
C+ ++ HK+ L + A I F+ R+ D ++ G A +HGD +
Sbjct: 399 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 458
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R L +F++G+ +L+ ++++RGLDV + V+N D P S Y HR
Sbjct: 459 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 507
Score = 62 (26.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G P+ K +R +RQT+M SAT P V + A + D
Sbjct: 317 NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDY 376
Query: 341 LLVQAKNV 348
+ N+
Sbjct: 377 TQINVGNL 384
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 208 (78.3 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 53/166 (31%), Positives = 82/166 (49%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q P L D+V + TGSGKTLAYLLP + + + G+G
Sbjct: 193 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPI--- 248
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++AP+REL Q V+++ G + + GGA + Q L + I +
Sbjct: 249 ----CLVLAPTRELAQQ-VQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVE-ICIA 302
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + +GK + C +LVLDE D +L F + +IV+ +
Sbjct: 303 TPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 348
Score = 150 (57.9 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 393 CV-TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
C+ ++ HK+ L + A I F+ R+ D ++ G A +HGD +
Sbjct: 399 CMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPE 458
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
R L +F++G+ +L+ ++++RGLDV + V+N D P S Y HR
Sbjct: 459 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 507
Score = 62 (26.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 283 NFREAMHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
N R + +++ R G P+ K +R +RQT+M SAT P V + A + D
Sbjct: 317 NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDY 376
Query: 341 LLVQAKNV 348
+ N+
Sbjct: 377 TQINVGNL 384
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 211 (79.3 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 51/166 (30%), Positives = 91/166 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ VPT +Q IP L D++ + TGSGKT A+LLP++++ ++ K+ +
Sbjct: 211 YEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRA-LVQSKAPS-------- 261
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++ P+REL +QI R+ K+L+G + LVGG Q LR+ + +++
Sbjct: 262 ----ALVLTPTRELAIQIERQAKELMGGLPRMRTALLVGGLPAPPQLHRLRQ-RVQVIIA 316
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ +I + + +V+DE D +L F+E + ++E+V
Sbjct: 317 TPGRLLDIMKQSSVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENV 362
Score = 119 (46.9 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLV 485
L +AV K+ G+K+ +H + ++ R T L+ G+ V+V+ + RGLD+ LV
Sbjct: 448 LSEAVEKIT--GLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVKLV 505
Query: 486 VNLDLPTDSIHYAHR 500
VN D+P+ Y H+
Sbjct: 506 VNFDMPSSMDEYVHQ 520
Score = 65 (27.9 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 317 QTIMVSATVPFSVIRAARSWGHDPLLVQA--KNVIPLESM 354
QTI+VSAT+P + + A HDP+ V A KN +P S+
Sbjct: 367 QTILVSATIPTRIEQLASRLLHDPVRVLAGEKN-LPCPSV 405
>POMBASE|SPBC21H7.04 [details] [associations]
symbol:dbp7 "ATP-dependent RNA helicase Dbp7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC21H7.04
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
HOGENOM:HOG000268799 OrthoDB:EOG4W6S47 PIR:T39930
RefSeq:NP_595929.1 ProteinModelPortal:O60173 STRING:O60173
EnsemblFungi:SPBC21H7.04.1 GeneID:2540518 KEGG:spo:SPBC21H7.04
NextBio:20801645 Uniprot:O60173
Length = 709
Score = 245 (91.3 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 73/224 (32%), Positives = 123/224 (54%)
Query: 131 NVPTEVQSAAIPSILK--NHDVVIQSYTGSGKTLAYLLPILSKVGPL-KDKSSNGNGESG 187
+ PT +QS +P++L + D I++ TGSGKTLAYLLPI+ ++ L K+ + +G
Sbjct: 160 SAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG--- 216
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLG-PSDKKAVQ-QLVGGANRSRQEEALRKNKPA 245
I AVI+AP+REL QI KL P V ++GG + ++ +RK
Sbjct: 217 ----IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVN- 271
Query: 246 IVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
I++GTPGR+A+ + L R++VLDE D L+ F E + +I+ ++ +S +
Sbjct: 272 ILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKK 331
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+ L++ + + T++ SAT+ +V R + S D L +++ V
Sbjct: 332 D----LSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIV 371
Score = 109 (43.4 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 443 LHGDLGKLARSTTLKKFKNGE---VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
LHG L + R++TL F + E +L+ +++ARGLD+ DLVV D P + Y H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 500 R 500
R
Sbjct: 533 R 533
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 195 (73.7 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 58/158 (36%), Positives = 86/158 (54%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q A IP IL+ D + + TGSGKT+A+ P+L+K S + +G G
Sbjct: 25 PTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKW------SEDPSGMFG----- 73
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
V++ P+REL MQI + L G S V +VGG + +Q L++ KP ++ TPG
Sbjct: 74 --VVLTPTRELAMQIAEQFTAL-GSSMNIRVSVIVGGESIVQQALDLQR-KPHFIIATPG 129
Query: 253 RIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFNFRE 286
R+A I ++G G ++LVLDE D LL+ F +
Sbjct: 130 RLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFAD 167
Score = 155 (59.6 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 43/188 (22%), Positives = 85/188 (45%)
Query: 376 QAKQADQ-SLPPALKHYYCVTKLQHKVDTLRRCV--HALDAQTVIAFMNNTRQLKDAVFK 432
Q + D ++P LK Y + K L + + + +T I F+N T +
Sbjct: 214 QVESVDNVAIPSTLKIEYILVPEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRT 273
Query: 433 LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT 492
L+ ++ A LH + + R+ +L +F+ R+L+ ++++RGLD+ +LVVN D+P+
Sbjct: 274 LKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPS 333
Query: 493 DSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEE 552
D + HR+ +S + +V ++ ++ ++ + VI K
Sbjct: 334 DPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKAL 393
Query: 553 EKTLEAVR 560
K +A R
Sbjct: 394 TKVTKAKR 401
Score = 137 (53.3 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 53/170 (31%), Positives = 82/170 (48%)
Query: 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI 254
V++ P+REL MQI + L G S V +VGG + +Q L++ KP ++ TPGR+
Sbjct: 74 VVLTPTRELAMQIAEQFTAL-GSSMNIRVSVIVGGESIVQQALDLQR-KPHFIIATPGRL 131
Query: 255 AE-ISAAGKLHTHG---CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310
A I ++G G ++LVLDE D LL+ F +H+ A P PK
Sbjct: 132 AHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTF-------ADHLATCISALP--PKD-- 180
Query: 311 AMRAERQTIMVSATVPF---SVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
+RQT++ +AT+ S+ A G PL + ++P+T
Sbjct: 181 ----KRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPST 226
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 201 (75.8 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 51/166 (30%), Positives = 84/166 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q+ P + D+V + TGSGKTLAY+LP + + + + G+G
Sbjct: 177 FAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINN-QPRLERGDGPI--- 232
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++AP+REL QI +++ G + + GGA + +Q L + IV+
Sbjct: 233 ----ALVLAPTRELAQQI-QQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVE-IVIA 286
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ + G C +LVLDE D +L F + +I++ +
Sbjct: 287 TPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332
Score = 154 (59.3 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ +T+I F+ +++ + + +G +A +HGD + R L F+NG +LV +
Sbjct: 404 ETKTII-FVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATD 462
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHR 500
++ARGLDV + V+N D P++S Y HR
Sbjct: 463 VAARGLDVDDVKFVINYDYPSNSEDYVHR 491
Score = 47 (21.6 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
G P+ K +R +RQ +M SAT P V + A +
Sbjct: 320 GFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEF 356
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 222 (83.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 62/169 (36%), Positives = 92/169 (54%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
++ PT +Q+ AIPSI+ DV+ + TGSGKTLA+LLP+ + + + G+G
Sbjct: 324 YSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILD-QPELEEGDGPI--- 379
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
AVI+AP+REL MQ +E K P K V GG S Q L++ IVV
Sbjct: 380 ----AVILAPTRELAMQTYKEANKFAKPLGLK-VACTYGGVGISEQIADLKRGAE-IVVC 433
Query: 250 TPGRIAEISAA--GKL-HTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ AA GK+ + +LVLDE D + F + ++V ++
Sbjct: 434 TPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNI 482
Score = 138 (53.6 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 417 IAFMNNTRQLKDAVFKLEARGMKA-AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
I F++ + D V +L G + A LHG + + R +++ FK G ++VLV ++AR
Sbjct: 555 IVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAAR 614
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHR 500
GLDV LVVN D P Y HR
Sbjct: 615 GLDVKNLILVVNYDCPNHYEDYVHR 639
Score = 123 (48.4 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 50/158 (31%), Positives = 72/158 (45%)
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
AVI+AP+REL MQ +E K P K V GG S Q L++ IVV TPGR
Sbjct: 380 AVILAPTRELAMQTYKEANKFAKPLGLK-VACTYGGVGISEQIADLKRGAE-IVVCTPGR 437
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMR 313
+ ++ AA R + +DE R+ + G P+ K +R
Sbjct: 438 MIDVLAANSGKVTNLRRVTYLVLDEA---------DRMFD-----KGFEPQIMKVVNNIR 483
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDP--LLVQAKNVI 349
++QT++ SAT P + AR P +LV K+V+
Sbjct: 484 PDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVV 521
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 212 (79.7 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 52/165 (31%), Positives = 87/165 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F T VQ+ IP +L DV+ + TGSGKTLA+L+P + + LK K NG G
Sbjct: 62 FTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTG----- 116
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+++ P+REL +QI ++L+ + ++GGANR ++ E L K +++
Sbjct: 117 ----IIVITPTRELALQIFGVARELM-EFHSQTFGIVIGGANRRQEAEKLMKGVN-MLIA 170
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ + + + L++DE D +L F + M +I++
Sbjct: 171 TPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIK 215
Score = 139 (54.0 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 41/181 (22%), Positives = 73/181 (40%)
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
+ D S L+ Y V + L + + +I F+++ +K L +
Sbjct: 255 ETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDL 314
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
ELHG + R+ T +F N E +L+ +++ARGLD+ D ++ D P D Y
Sbjct: 315 PVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYI 374
Query: 499 HRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLV-IGKEEEKTLE 557
HR + P + K VP+ EF E ++ + + EK ++
Sbjct: 375 HRVGRTARGTKGKGKSLMFLTPNELGFLRYLKASKVPLNEYEFPENKIANVQSQLEKLIK 434
Query: 558 A 558
+
Sbjct: 435 S 435
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 215 (80.7 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 54/164 (32%), Positives = 91/164 (55%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q +IP L D++ ++ G+GKT A+ +P+L K+ D+ +N
Sbjct: 151 FERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKI----DQDNNV------- 199
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVV 248
I+AVI+ P+REL +Q ++ K LG K V GG S +++ +R +P ++V
Sbjct: 200 --IQAVIIVPTRELALQ-TSQVCKELGKHLKIQVMVTTGGT--SLKDDIMRLYQPVHLLV 254
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
GTPGRI +++ G C LV+DE D+LLS F+ ++ ++
Sbjct: 255 GTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLI 298
Score = 136 (52.9 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 33/157 (21%), Positives = 67/157 (42%)
Query: 381 DQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKA 440
D+ + +Y + + K+ L L I F N+ +++ K+ G
Sbjct: 336 DELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSC 395
Query: 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+H + + R+ F+NG R LV +L RG+D+ ++V+N D P ++ Y HR
Sbjct: 396 FYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHR 455
Query: 501 AXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
V++ + F + +++++L I+
Sbjct: 456 VGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIK 492
Score = 46 (21.3 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 184 GESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQ 235
G G+ D+ V ++ + ++ E KLL + +V+ L+ SRQ
Sbjct: 255 GTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQ 306
Score = 38 (18.4 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 316 RQTIMVSATVPFSV 329
RQ +M SAT P +V
Sbjct: 305 RQILMFSATFPVTV 318
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 179 (68.1 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 38/151 (25%), Positives = 73/151 (48%)
Query: 381 DQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
D+ +K ++ V K K TL +L + F N +++ ++
Sbjct: 238 DELTLDGIKQFFVSVEKEDWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFT 297
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
A +HGD+ + R +K F++GE RVL+T ++ ARG+DV + LV+N DLP D +Y H
Sbjct: 298 VASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIH 357
Query: 500 RAXXXXXXXXXXXVVSICEEPEVFVVKKMQK 530
R ++ + ++ +++ +++
Sbjct: 358 RIGRSGRFGRKGVAINFVKNSDIRILRDIEQ 388
Score = 171 (65.3 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 48/166 (28%), Positives = 81/166 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K D + Q+ +G+GKT + +G L+ N
Sbjct: 52 FEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATF------SIGALQCVEVNVRSP---- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +I++P+REL QI +++ L V VGG N S + L IV G
Sbjct: 102 ---QVLILSPTRELAQQI-QKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVH-IVSG 156
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ ++ L T + ++LDE DE+LS F++ ++ + ++
Sbjct: 157 TPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYL 202
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 181 (68.8 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 51/168 (30%), Positives = 84/168 (50%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP++L+ D++ + TG+GKT + LP+L L + + G +
Sbjct: 21 YREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH---LITRQPHAKG----R 73
Query: 190 TDIEAVIVAPSRELGMQI---VREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKNKP 244
+ A+I+ P+REL QI VR+ K L ++ LV GG + + Q LR
Sbjct: 74 RPVRALILTPTRELAAQIGENVRDYSKYLN------IRSLVVFGGVSINPQMMKLRGGVD 127
Query: 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
++V TPGR+ ++ + LVLDE D +L F + R++
Sbjct: 128 -VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVL 174
Score = 166 (63.5 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 44/154 (28%), Positives = 77/154 (50%)
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLG 448
+H + V K + K + L + + Q V+ F +L G+++A +HG+
Sbjct: 222 QHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKS 280
Query: 449 KLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXX 508
+ AR+ L FK+G++RVLV +++ARGLD+ E VVN +LP Y HR
Sbjct: 281 QGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAA 340
Query: 509 XXXXVVS-IC-EEPEVF-----VVKKMQKQLAVP 535
+S +C +E ++ ++KK ++A+P
Sbjct: 341 ATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374
Score = 44 (20.5 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 314 AERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
A+RQ ++ SAT + A H+PL ++
Sbjct: 179 AKRQNLLFSATFSDDIKALAEKLLHNPLEIE 209
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 216 (81.1 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 55/160 (34%), Positives = 87/160 (54%)
Query: 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193
TE+Q IPS LK D++ + TGSGKTLA+++P++ + K S +G G
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLG--------- 113
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
A++++P+REL +Q + K+ G + ++GG N ++E L + I+V TPGR
Sbjct: 114 ALVISPTRELAIQTFETLVKI-GRLHSFSAGLIIGGNNYKEEKERLSRMN--ILVCTPGR 170
Query: 254 IAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+ + I A T G + L+LDE D +L FR + IV
Sbjct: 171 LLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIV 210
Score = 140 (54.3 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 41/156 (26%), Positives = 68/156 (43%)
Query: 383 SLPPALKHYYCVTKLQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLKDA--VFKLEARGMK 439
S P L +Y L K+D L + L +T++ F+++ +Q++ F+ G+
Sbjct: 253 STPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKTIV-FLSSCKQVRFVYETFRRMRPGIS 311
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
LHG + R+ KF + VL ++ ARGLD D V+ LD P D Y H
Sbjct: 312 LLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIH 371
Query: 500 RAXXXXXXXXXX-XVVSICEEPEVFVVKKMQKQLAV 534
R ++ + E F+ + K++AV
Sbjct: 372 RVGRTARYNRSGNALLLLLPSEEAFLKRLESKKIAV 407
Score = 47 (21.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 272 VLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL--AMRAERQTIMVSATVPFSV 329
+L ID+ ++F+ I++ R R A+ ++ RQT++ SAT SV
Sbjct: 171 LLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSV 230
Query: 330 IRAAR 334
AR
Sbjct: 231 KDLAR 235
>RGD|619920 [details] [associations]
symbol:Ddx39a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AF063447 RGD:619920
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:BC086328 IPI:IPI00325144 RefSeq:NP_446015.2 UniGene:Rn.161716
ProteinModelPortal:Q5U216 SMR:Q5U216 STRING:Q5U216 PRIDE:Q5U216
Ensembl:ENSRNOT00000045974 GeneID:89827 KEGG:rno:89827
InParanoid:Q5U216 NextBio:617744 Genevestigator:Q5U216
GermOnline:ENSRNOG00000004373 Uniprot:Q5U216
Length = 427
Score = 209 (78.6 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 63/214 (29%), Positives = 103/214 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+EVQ IP + DV+ Q+ +G GKT ++L L ++ P+ NG+
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPI-------NGQ---- 112
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +++ +REL QI +E ++ V GG + + E+ L+KN P +VVG
Sbjct: 113 --VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVG 170
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGRI + + L+ + VLDE D++L + M R V+ + R + P E
Sbjct: 171 TPGRILALVRSRSLNLRNVKHFVLDECDKMLE---QLDMRRDVQEIFRLT---PHE---- 220
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
+Q +M SAT+ + R + DP+ V
Sbjct: 221 ------KQCMMFSATLSKEIRPVCRKFMQDPMEV 248
Score = 138 (53.6 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 36/150 (24%), Positives = 67/150 (44%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
L+ YY K K L + L+ V+ F+ + ++ L + A +H +
Sbjct: 261 LQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGM 320
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR-AXXXXX 506
+ R + ++FK+ + R+LV L RG+D+ ++V N D+P DS Y HR A
Sbjct: 321 AQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 380
Query: 507 XXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
V + +E + ++ +Q + V +
Sbjct: 381 GTKGLAVTFVSDENDAKILNDVQDRFEVNV 410
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 220 (82.5 bits), Expect = 3.9e-24, Sum P(3) = 3.9e-24
Identities = 54/163 (33%), Positives = 87/163 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
FNVPT +Q +IP IL HD+V + TGSGKT A+++P++ K+G D S+
Sbjct: 250 FNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLG---DHSTT-------- 298
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ AVI++P+REL +Q + +K + + + +VGG + Q L +N P I++
Sbjct: 299 VGVRAVILSPTRELAIQTFKVVKDFSQGTQLRTIL-IVGGDSMEDQFTDLARN-PDIIIA 356
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ + +++V DE D L F E + I+
Sbjct: 357 TPGRLMHHLLETGMSLSKVQYIVFDEADRLFEMGFNEQLTEIL 399
Score = 134 (52.2 bits), Expect = 3.9e-24, Sum P(3) = 3.9e-24
Identities = 31/108 (28%), Positives = 51/108 (47%)
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
+ I F++ ++ LE G+ + +HG L +AR L KF++ +V V+V +L+A
Sbjct: 499 STIIFVSTKYHVEFIHILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLAA 558
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEV 522
RG+D+ D V+N D P + HR S+ EV
Sbjct: 559 RGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEV 606
Score = 50 (22.7 bits), Expect = 3.9e-24, Sum P(3) = 3.9e-24
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
G N + + + RQT++ SAT+P ++ R+ ++P L+
Sbjct: 390 GFNEQLTEILSKLSENRQTLLFSATLPSLLVDFVRAGLNNPKLI 433
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 204 (76.9 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 63/202 (31%), Positives = 98/202 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+N T +Q+ ++P+IL DV+ Q TGSGKT A+ L +L+K+ K+
Sbjct: 21 YNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDV-------------KR 67
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
I+ +++ P+REL Q+ +EI+ L V L GG Q +L ++ I+VG
Sbjct: 68 FRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL-EHGAHIIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR------SGANP 303
TPGRI + +L LVLDE D +L F+ + I+E R S P
Sbjct: 127 TPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFP 186
Query: 304 REPKSALAMRAERQTIMVSATV 325
+ +S +A + +MV A V
Sbjct: 187 EQIQS-IAKQIMYNPVMVKAAV 207
Score = 145 (56.1 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 33/112 (29%), Positives = 56/112 (50%)
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLG 448
+H+Y + + ++ L+ + ++ + F N R+ + +LE G LHGDL
Sbjct: 216 QHFYQLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLE 275
Query: 449 KLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R TL +F N VLV +++ARGLD+ D V N + D+ + HR
Sbjct: 276 QRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHR 327
Score = 59 (25.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
ERQT++ SAT P + A+ ++P++V+A
Sbjct: 175 ERQTLLFSATFPEQIQSIAKQIMYNPVMVKA 205
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 204 (76.9 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 63/202 (31%), Positives = 98/202 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+N T +Q+ ++P+IL DV+ Q TGSGKT A+ L +L+K+ K+
Sbjct: 21 YNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDV-------------KR 67
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
I+ +++ P+REL Q+ +EI+ L V L GG Q +L ++ I+VG
Sbjct: 68 FRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL-EHGAHIIVG 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR------SGANP 303
TPGRI + +L LVLDE D +L F+ + I+E R S P
Sbjct: 127 TPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFP 186
Query: 304 REPKSALAMRAERQTIMVSATV 325
+ +S +A + +MV A V
Sbjct: 187 EQIQS-IAKQIMYNPVMVKAAV 207
Score = 145 (56.1 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 33/112 (29%), Positives = 56/112 (50%)
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLG 448
+H+Y + + ++ L+ + ++ + F N R+ + +LE G LHGDL
Sbjct: 216 QHFYQLDDDKSRMQALQLLLLEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLE 275
Query: 449 KLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ R TL +F N VLV +++ARGLD+ D V N + D+ + HR
Sbjct: 276 QRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHR 327
Score = 59 (25.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
ERQT++ SAT P + A+ ++P++V+A
Sbjct: 175 ERQTLLFSATFPEQIQSIAKQIMYNPVMVKA 205
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 189 (71.6 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 55/164 (33%), Positives = 80/164 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q A IP L D+ + TG+GKT A+ LP+L ++ K + S
Sbjct: 207 FKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERL-IYKPRQS-------PV 258
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T + +++ P+RELG+Q V + K L VGG + QE ALR P I++
Sbjct: 259 TRV--LVLVPTRELGIQ-VHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRA-APDILIA 314
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ + + H L+LDE D +L F E M I+
Sbjct: 315 TPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358
Score = 169 (64.5 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 36/123 (29%), Positives = 61/123 (49%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
V+ F +Q L G++ ELHG+L + R L++FK+ ++ +LV +++AR
Sbjct: 435 VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAAR 494
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVP 535
GLD+ V+N +P HY HR VS+ E E ++K++ K P
Sbjct: 495 GLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAP 554
Query: 536 IQA 538
++A
Sbjct: 555 VKA 557
>UNIPROTKB|Q0IIK5 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0003725 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
GO:GO:0004518 GO:GO:0010494 GO:GO:0008026 GO:GO:0043330
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0071920 GeneTree:ENSGT00660000095174
GO:GO:0033677 EMBL:BC122599 IPI:IPI00716534 RefSeq:NP_001068936.1
UniGene:Bt.1784 ProteinModelPortal:Q0IIK5 STRING:Q0IIK5
PRIDE:Q0IIK5 Ensembl:ENSBTAT00000013075 GeneID:510816
KEGG:bta:510816 CTD:1653 HOVERGEN:HBG005462 InParanoid:Q0IIK5
KO:K13177 OMA:TLNNVKQ OrthoDB:EOG46HG95 NextBio:20869630
ArrayExpress:Q0IIK5 Uniprot:Q0IIK5
Length = 740
Score = 168 (64.2 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 55/168 (32%), Positives = 86/168 (51%)
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VGGANRSRQEEALRKNKPAIVVGT 250
+A+IV PSREL Q + +K+ D +++L +GG +R + ++ N IVVGT
Sbjct: 288 KALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGV-AARDQLSVLDNGVDIVVGT 346
Query: 251 PGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310
PGR+ ++ + GKL+ RFLVLDE D LLS + + ++RI + + + R
Sbjct: 347 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKR------ 400
Query: 311 AMRAERQTIMVSATV-PFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
Q I+ SAT+ F V + + H P V K +S+P T
Sbjct: 401 -----LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE---DSVPDT 440
Score = 125 (49.1 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
LHGD R L++FK G+VR L+ +++ARG+D+ V+N+ LP + +Y HR
Sbjct: 545 LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR 602
Score = 109 (43.4 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV-GPLKDKSSNGNGESGKKT 190
+PT++Q+ +IP IL DV++ + TGSGKT A+ +P++ V LKD+ G++ KT
Sbjct: 24 LPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKATIKT 83
>UNIPROTKB|F6V659 [details] [associations]
symbol:DDX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 CTD:1653 KO:K13177
OMA:TLNNVKQ Ensembl:ENSCAFT00000005957 EMBL:AAEX03010740
EMBL:AAEX03010739 RefSeq:XP_848865.1 GeneID:475671 KEGG:cfa:475671
Uniprot:F6V659
Length = 740
Score = 168 (64.2 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 55/168 (32%), Positives = 86/168 (51%)
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VGGANRSRQEEALRKNKPAIVVGT 250
+A+IV PSREL Q + +K+ D +++L +GG +R + ++ N IVVGT
Sbjct: 288 KALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGV-AARDQLSVLDNGVDIVVGT 346
Query: 251 PGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310
PGR+ ++ + GKL+ RFLVLDE D LLS + + ++RI + + + R
Sbjct: 347 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKR------ 400
Query: 311 AMRAERQTIMVSATV-PFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
Q I+ SAT+ F V + + H P V K +S+P T
Sbjct: 401 -----LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE---DSVPDT 440
Score = 125 (49.1 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
LHGD R L++FK G+VR L+ +++ARG+D+ V+N+ LP + +Y HR
Sbjct: 545 LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR 602
Score = 109 (43.4 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV-GPLKDKSSNGNGESGKKT 190
+PT++Q+ +IP IL DV++ + TGSGKT A+ +P++ V LKD+ G++ KT
Sbjct: 24 LPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKT 83
>UNIPROTKB|Q92499 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0007275 "multicellular organismal development"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0033677
"DNA/RNA helicase activity" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003712
"transcription cofactor activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IDA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=IDA] [GO:0071920 "cleavage body" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003724 "RNA helicase
activity" evidence=TAS] [GO:0090305 "nucleic acid phosphodiester
bond hydrolysis" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006446 GO:GO:0006351
GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0003725 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
GO:GO:0004518 GO:GO:0010494 GO:GO:0000245 GO:GO:0008026
GO:GO:0043330 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 GO:GO:0071920
GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
OrthoDB:EOG46HG95 HOGENOM:HOG000251633 EMBL:X70649 EMBL:BC012132
EMBL:BC053673 IPI:IPI00293655 RefSeq:NP_004930.1 UniGene:Hs.440599
ProteinModelPortal:Q92499 SMR:Q92499 IntAct:Q92499
MINT:MINT-5005493 STRING:Q92499 PhosphoSite:Q92499 DMDM:6919862
REPRODUCTION-2DPAGE:IPI00293655 PaxDb:Q92499 PeptideAtlas:Q92499
PRIDE:Q92499 Ensembl:ENST00000233084 Ensembl:ENST00000381341
GeneID:1653 KEGG:hsa:1653 UCSC:uc002rce.3 GeneCards:GC02P015731
HGNC:HGNC:2734 HPA:CAB012280 HPA:HPA034502 HPA:HPA034503 MIM:601257
neXtProt:NX_Q92499 PharmGKB:PA27199 InParanoid:Q92499
PhylomeDB:Q92499 ChiTaRS:DDX1 GenomeRNAi:1653 NextBio:6806
ArrayExpress:Q92499 Bgee:Q92499 CleanEx:HS_DDX1
Genevestigator:Q92499 GermOnline:ENSG00000079785 Uniprot:Q92499
Length = 740
Score = 168 (64.2 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 55/168 (32%), Positives = 87/168 (51%)
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VGGANRSRQEEALRKNKPAIVVGT 250
+A+IV PSREL Q + IK+ D +++L +GG +R + ++ +N IVVGT
Sbjct: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV-AARDQLSVLENGVDIVVGT 346
Query: 251 PGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310
PGR+ ++ + GKL+ RFLVLDE D LLS + + ++R+ + + + R
Sbjct: 347 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR------ 400
Query: 311 AMRAERQTIMVSATV-PFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
Q I+ SAT+ F V + + H P V K +S+P T
Sbjct: 401 -----LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE---DSVPDT 440
Score = 125 (49.1 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
LHGD R L++FK G+VR L+ +++ARG+D+ V+N+ LP + +Y HR
Sbjct: 545 LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR 602
Score = 109 (43.4 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV-GPLKDKSSNGNGESGKKT 190
+PT++Q+ +IP IL DV++ + TGSGKT A+ +P++ V LKD+ G++ KT
Sbjct: 24 LPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKT 83
>UNIPROTKB|Q5NVJ8 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9601
"Pongo abelii" [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0032508
"DNA duplex unwinding" evidence=ISS] [GO:0033677 "DNA/RNA helicase
activity" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527
GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518 GO:GO:0010494
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0071920 GO:GO:0033677 CTD:1653
HOVERGEN:HBG005462 KO:K13177 HSSP:P10081 EMBL:CR926030
RefSeq:NP_001127099.1 UniGene:Pab.18409 ProteinModelPortal:Q5NVJ8
GeneID:100174133 KEGG:pon:100174133 InParanoid:Q5NVJ8
Uniprot:Q5NVJ8
Length = 740
Score = 168 (64.2 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 55/168 (32%), Positives = 87/168 (51%)
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VGGANRSRQEEALRKNKPAIVVGT 250
+A+IV PSREL Q + IK+ D +++L +GG +R + ++ +N IVVGT
Sbjct: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGV-AARDQLSVLENGVDIVVGT 346
Query: 251 PGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310
PGR+ ++ + GKL+ RFLVLDE D LLS + + ++R+ + + + R
Sbjct: 347 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR------ 400
Query: 311 AMRAERQTIMVSATV-PFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
Q I+ SAT+ F V + + H P V K +S+P T
Sbjct: 401 -----LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE---DSVPDT 440
Score = 125 (49.1 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
LHGD R L++FK G+VR L+ +++ARG+D+ V+N+ LP + +Y HR
Sbjct: 545 LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR 602
Score = 109 (43.4 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV-GPLKDKSSNGNGESGKKT 190
+PT++Q+ +IP IL DV++ + TGSGKT A+ +P++ V LKD+ G++ KT
Sbjct: 24 LPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKT 83
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 213 (80.0 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 61/169 (36%), Positives = 90/169 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q + P IL +D+V + TGSGKTLA+LLP L K+ L + S G
Sbjct: 130 FTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYG------A 183
Query: 190 TDIEAVIVAPSRELGMQIVREIK-KLLGPSDKKAVQQLV--GGANRSRQEEALRKNKPAI 246
T + +++AP+REL QI K + G S ++QL GG + Q LR N I
Sbjct: 184 TPL-VLVMAPTRELAQQIEEVCKTSIRGTS----IRQLCAYGGLGKIDQSRILR-NGVDI 237
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
V+GTPGR+ ++ K H ++LVLDE D +L F + +++ +
Sbjct: 238 VIGTPGRLNDLLR--KHHLSSVQYLVLDEADRMLDMGFMPQIESLIDQI 284
Score = 126 (49.4 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEA-RGMKAAELHGDLGKLARSTTLKKFK 460
D + + + A TVI F N + D L + +K+ LH + R + LK F+
Sbjct: 349 DEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFR 408
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+ +R+L+ +++ARGLD+ V N LP + Y HR
Sbjct: 409 DHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHR 448
Score = 53 (23.7 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPLLV 343
ERQT+M SAT P V A + DP+ +
Sbjct: 287 ERQTLMFSATWPKEVKLLASKFLKDPIKI 315
>UNIPROTKB|Q5XH91 [details] [associations]
symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003712 "transcription cofactor activity"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0033677 "DNA/RNA helicase activity" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032508 GO:GO:0008143 GeneTree:ENSGT00660000095174
GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
OrthoDB:EOG46HG95 HSSP:P10081 HOGENOM:HOG000251633 EMBL:CR855610
EMBL:BC084181 RefSeq:NP_001011133.1 UniGene:Str.3470
ProteinModelPortal:Q5XH91 STRING:Q5XH91 PRIDE:Q5XH91
Ensembl:ENSXETT00000038646 GeneID:496549 KEGG:xtr:496549
Xenbase:XB-GENE-969096 InParanoid:Q5XH91 Bgee:Q5XH91 Uniprot:Q5XH91
Length = 740
Score = 176 (67.0 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 57/168 (33%), Positives = 88/168 (52%)
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VGGANRSRQEEALRKNKPAIVVGT 250
+A+I+ PSREL Q + +K+ D +++L +GG ++++ L +N IVVGT
Sbjct: 288 KALIIEPSRELAEQTLNNVKQFKKYVDSPKLRELLIIGGV-AAKEQLTLLENGVDIVVGT 346
Query: 251 PGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310
PGRI ++ + GKL+ RFLVLDE D LLS + + ++RI H G P+
Sbjct: 347 PGRIDDLISTGKLNLSQVRFLVLDEADGLLSQGYSDFINRI--H-----GQIPQVTSDGK 399
Query: 311 AMRAERQTIMVSATV-PFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
+ Q I+ SAT+ F V + + H P V K +S+P T
Sbjct: 400 RL----QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE---DSVPET 440
Score = 113 (44.8 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
LH D R L++FK EVR L+ +++ARG+D+ V+N+ LP + +Y HR
Sbjct: 545 LHSDRKPQERKHNLERFKKCEVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR 602
Score = 112 (44.5 bits), Expect = 4.5e-24, Sum P(3) = 4.5e-24
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV-GPLKDKSSNGNGESGKKT 190
+PT++Q+ +IP IL DV++ + TGSGKT A+ +P++ V LKD+ G++ KT
Sbjct: 24 LPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTSVKT 83
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 204 (76.9 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 60/203 (29%), Positives = 104/203 (51%)
Query: 136 VQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV-GPLKDKSSNGNGESGKKTDIEA 194
+Q+ + D++ Q+ TG+GKT ++ +P++ K+ G L+D+ + G+ +
Sbjct: 213 IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEKLLGELQDR------KRGRAPQV-- 264
Query: 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI 254
+++AP+REL Q+ R+ + + K AV GG Q E + KN I+VGTPGRI
Sbjct: 265 LVLAPTRELASQVSRDFSDI---TKKLAVACFYGGTPYGGQIERM-KNGIDILVGTPGRI 320
Query: 255 AEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR-SGANPREPKSALAMR 313
+ GKL + +VLDE+D++L F + + I+ ++ S NP
Sbjct: 321 KDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNP---------- 370
Query: 314 AERQTIMVSATVPFSVIRAARSW 336
QT++ SAT P+ V A+ +
Sbjct: 371 ---QTLLFSATCPYWVFNVAKKY 390
Score = 153 (58.9 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 36/129 (27%), Positives = 61/129 (47%)
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
R +T+I F ++ ++ + R A LHGD+ + R TLK F+NG+
Sbjct: 433 RVYSGFQGRTII-FCETKKEAQELSQNVAVR-QDAQSLHGDIPQKQREITLKGFRNGDFG 490
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVV 525
VLV ++ARGLD+ E DLVV P D Y HR+ + + E + +
Sbjct: 491 VLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQL 550
Query: 526 KKMQKQLAV 534
+++++ +
Sbjct: 551 AQVEQKAGI 559
>UNIPROTKB|A7YWQ8 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
Uniprot:A7YWQ8
Length = 545
Score = 231 (86.4 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 70/198 (35%), Positives = 102/198 (51%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQS+ IP +L+ ++ + TGSGKTL Y+LP+L ++ L S + +
Sbjct: 151 PTTVQSSTIPPLLRGRHILCAAETGSGKTLGYMLPLLQRL--LGQPSLYTSRIPAPR--- 205
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVVGTP 251
+++ PSREL Q VR + + LG S VQ+L GG SR L K+ PA ++V TP
Sbjct: 206 -GLVLVPSRELAEQ-VRAVAQPLGSSLGLRVQELGGGHGMSRVRLQLSKHPPAEVLVATP 263
Query: 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALA 311
G + + + FLVLDE+D LL +F E + I+E G P + K
Sbjct: 264 GALWKALKGQLISLAQLSFLVLDEVDTLLDESFLELVDYILEKSHIAEG--PADLKDPFN 321
Query: 312 MRAERQTIMVSATVPFSV 329
+A Q ++V AT P V
Sbjct: 322 PKA--QLVLVGATFPEGV 337
Score = 118 (46.6 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 30/118 (25%), Positives = 57/118 (48%)
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
TV+ F N++ + + L+ ++ L G + R+ + F+ G +L+ ++++
Sbjct: 399 TVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQSFQKGSRDILLCTDIAS 458
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXX--XVVSICEEP-EVFVVKKMQ 529
RGLD + +LV+N D P Y HRA V+S P +V +V+K++
Sbjct: 459 RGLDSTQVELVINYDFPLTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVSLVQKIE 516
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 189 (71.6 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 55/164 (33%), Positives = 80/164 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q A IP L D+ + TG+GKT A+ LP+L ++ K + S
Sbjct: 228 FKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERL-IYKPRQS-------PV 279
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T + +++ P+RELG+Q V + K L VGG + QE ALR P I++
Sbjct: 280 TRV--LVLVPTRELGIQ-VHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRA-APDILIA 335
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
TPGR+ + + H L+LDE D +L F E M I+
Sbjct: 336 TPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 379
Score = 169 (64.5 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 36/123 (29%), Positives = 61/123 (49%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
V+ F +Q L G++ ELHG+L + R L++FK+ ++ +LV +++AR
Sbjct: 456 VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAAR 515
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVP 535
GLD+ V+N +P HY HR VS+ E E ++K++ K P
Sbjct: 516 GLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAP 575
Query: 536 IQA 538
++A
Sbjct: 576 VKA 578
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 193 (73.0 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 51/165 (30%), Positives = 87/165 (52%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+EVQ+ IP + DV+ Q+ +G GKT ++L L ++ D + NG
Sbjct: 68 FEHPSEVQNECIPQAILGTDVICQAKSGMGKTAVFVLSTLQQI----DNNPNG------- 116
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLG--PSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
I +++ +REL QI E + P+ K AV + GG ++ +++ KP I+
Sbjct: 117 --ITTLVLCNTRELAYQICDEFDRFTKYLPNVKTAV--IYGGIPVQTHKDLIKEKKPNII 172
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL-SFNFREAMHRI 291
+GTPGRI ++++ G L + +LDE D +L S + R+ + +I
Sbjct: 173 IGTPGRILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKI 217
Score = 155 (59.6 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 40/151 (26%), Positives = 71/151 (47%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGD 446
L+ YY + K L + +LD + F+ + R+ DA+ K L+ G + +H D
Sbjct: 265 LQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRA-DALNKILQDIGFPSICIHRD 323
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXX 506
L + R +KFKN E R++V + RG+D+ ++V+N D+ + Y HR
Sbjct: 324 LDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAESADTYLHRVGRAGR 383
Query: 507 XXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
+S E V++++Q + V I+
Sbjct: 384 FGTKGLAISFVPSKEDPVLEQVQSKFVVSIK 414
Score = 113 (44.8 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 36/150 (24%), Positives = 69/150 (46%)
Query: 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251
I +++ +REL QI E + + GG ++ +++ KP I++GTP
Sbjct: 117 ITTLVLCNTRELAYQICDEFDRFTKYLPNVKTAVIYGGIPVQTHKDLIKEKKPNIIIGTP 176
Query: 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALA 311
GRI ++++ G L + +LDE D +L M + V+ + + AN
Sbjct: 177 GRILQLASEGALSLKEIKQFILDECDTMLE---SLDMRKDVQKIFKLIPAN--------- 224
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL 341
+Q +M SAT+ ++ + + ++PL
Sbjct: 225 ----KQVMMFSATLSDTIRPICKKFMNNPL 250
>MGI|MGI:1915528 [details] [associations]
symbol:Ddx39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915528 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX EMBL:AK088894 EMBL:AK145927 EMBL:AK146294
EMBL:AK150997 EMBL:AK162752 EMBL:AK168079 EMBL:BC020134
IPI:IPI00123878 IPI:IPI00553461 RefSeq:NP_932099.2 UniGene:Mm.28222
ProteinModelPortal:Q8VDW0 SMR:Q8VDW0 STRING:Q8VDW0
PhosphoSite:Q8VDW0 PaxDb:Q8VDW0 PRIDE:Q8VDW0
Ensembl:ENSMUST00000019576 Ensembl:ENSMUST00000109810
Ensembl:ENSMUST00000172396 GeneID:68278 KEGG:mmu:68278
UCSC:uc008chc.2 CTD:68278 GeneTree:ENSGT00660000095549
InParanoid:Q8VDW0 OMA:WANCVIS NextBio:326910 Bgee:Q8VDW0
CleanEx:MM_DDX39 Genevestigator:Q8VDW0
GermOnline:ENSMUSG00000005481 Uniprot:Q8VDW0
Length = 427
Score = 208 (78.3 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 63/214 (29%), Positives = 103/214 (48%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+EVQ IP + DV+ Q+ +G GKT ++L L ++ P+ NG+
Sbjct: 64 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-------NGQ---- 112
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +++ +REL QI +E ++ V GG + + E+ L+KN P +VVG
Sbjct: 113 --VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVG 170
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGRI + + L+ + VLDE D++L + M R V+ + R + P E
Sbjct: 171 TPGRILALVRSRSLNLRNVKHFVLDECDKMLE---QLDMRRDVQEIFRLT---PHE---- 220
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
+Q +M SAT+ + R + DP+ V
Sbjct: 221 ------KQCMMFSATLSKEIRPVCRKFMQDPMEV 248
Score = 138 (53.6 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 36/150 (24%), Positives = 67/150 (44%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
L+ YY K K L + L+ V+ F+ + ++ L + A +H +
Sbjct: 261 LQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGM 320
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR-AXXXXX 506
+ R + ++FK+ + R+LV L RG+D+ ++V N D+P DS Y HR A
Sbjct: 321 AQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 380
Query: 507 XXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
V + +E + ++ +Q + V +
Sbjct: 381 GTKGLAVTFVSDENDAKILNDVQDRFEVNV 410
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 209 (78.6 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 55/166 (33%), Positives = 89/166 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ VPT +Q IP L DV+ + TGSGKT A+LLP++++ L + K
Sbjct: 224 YEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRA--LCES----------K 271
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
T A+I+ P+REL +QI + K+L+ + LVGG Q LR++ +++
Sbjct: 272 TP-SALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVK-VIIA 329
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ +I + G + +V+DE D +L F++ + I+EHV
Sbjct: 330 TPGRLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHV 375
Score = 116 (45.9 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLV 485
L +AV K+ G+K+ +H + + R LK G+ V+V+ + RGLD+ LV
Sbjct: 461 LSEAVQKIT--GLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLV 518
Query: 486 VNLDLPTDSIHYAHR 500
VN D+P+ Y H+
Sbjct: 519 VNFDMPSSMDEYVHQ 533
Score = 66 (28.3 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ QTI+VSAT+P S+ + A H+P+ ++ + +P S+
Sbjct: 378 DSQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSV 418
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 191 (72.3 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 60/158 (37%), Positives = 84/158 (53%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT++Q I IL+ + + + TGSGKT A+ LPI+ K KD S I
Sbjct: 30 PTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWS--KDPSG-----------I 76
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
A+I+ P+REL +QI + L G + +VGG + RQ L K +P +VV TPG
Sbjct: 77 FALILTPTRELAIQIDEQFAAL-GANLNLKHALIVGGMDMIRQSIDLSK-RPHVVVATPG 134
Query: 253 RIAE-ISAAGKLHTHGCR---FLVLDEIDELLSFNFRE 286
R+A+ I + G+ G R FLV+DE D LLS F +
Sbjct: 135 RLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFAD 172
Score = 158 (60.7 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 44/171 (25%), Positives = 79/171 (46%)
Query: 383 SLPPALKHYYCVTKLQHKVDTLRRCVHALDA-----QTVIAFMNNTRQLKDAVFKLEARG 437
S+P L+ Y Q + L VH L ++ I F+N TR + L
Sbjct: 226 SVPSTLQQSYIFVSSQVREAYL---VHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLE 282
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
++ ELH ++ + R +L +F+ ++LV ++++RGLD+ LV+N DLP D Y
Sbjct: 283 LRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDY 342
Query: 498 AHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEF-TEGRLV 547
HR +SI E +V +V ++ ++ + E +E +++
Sbjct: 343 IHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKLSEYEHVSENKML 393
Score = 128 (50.1 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 48/138 (34%), Positives = 69/138 (50%)
Query: 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251
I A+I+ P+REL +QI + L G + +VGG + RQ L K +P +VV TP
Sbjct: 76 IFALILTPTRELAIQIDEQFAAL-GANLNLKHALIVGGMDMIRQSIDLSK-RPHVVVATP 133
Query: 252 GRIAE-ISAAGKLHTHGCR---FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
GR+A+ I + G+ G R FLV+DE D LLS F + +
Sbjct: 134 GRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCF--------------- 178
Query: 308 SALAMRAERQTIMVSATV 325
S L +RQT++ +ATV
Sbjct: 179 SVLPASEDRQTLLFTATV 196
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 193 (73.0 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 50/166 (30%), Positives = 85/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPL--KDKSSNGNGESG 187
+ PT VQ AIP++L+ D+++ + TG+GKT + LPIL ++ P DKS G
Sbjct: 21 YTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR----HG 76
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV-GGANRSRQEEALRKNKPAI 246
+ +++ P+REL Q+ K L D K V + GG + Q +A+ + +
Sbjct: 77 PRQP-RVLVLTPTRELAAQVHDSFK--LYARDLKFVSACIFGGVGMNPQVQAMARGVD-V 132
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+V PGR+ +++ G + LVLDE D +L F + +++
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVL 178
Score = 161 (61.7 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 38/132 (28%), Positives = 61/132 (46%)
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
HK L + A + V+ F L+ G+ A +HG+ + AR+ L
Sbjct: 235 HKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALAD 294
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICE 518
FK GEVR+LV +++ARGLD+ + VVN +LP Y HR +S+
Sbjct: 295 FKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVA 354
Query: 519 EPEVFVVKKMQK 530
E ++K +++
Sbjct: 355 PDEEKLLKSIER 366
Score = 41 (19.5 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 307 KSALA-MRAERQTIMVSATVPFSVIRAARSWGHDP 340
K LA + A+RQ ++ SAT + A H+P
Sbjct: 175 KKVLARLPAKRQNLLFSATFSKDITDLAGKLLHNP 209
>UNIPROTKB|E2QRW3 [details] [associations]
symbol:DDX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 Ensembl:ENSCAFT00000005957 Uniprot:E2QRW3
Length = 785
Score = 168 (64.2 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 55/168 (32%), Positives = 86/168 (51%)
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VGGANRSRQEEALRKNKPAIVVGT 250
+A+IV PSREL Q + +K+ D +++L +GG +R + ++ N IVVGT
Sbjct: 333 KALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGV-AARDQLSVLDNGVDIVVGT 391
Query: 251 PGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310
PGR+ ++ + GKL+ RFLVLDE D LLS + + ++RI + + + R
Sbjct: 392 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKR------ 445
Query: 311 AMRAERQTIMVSATV-PFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
Q I+ SAT+ F V + + H P V K +S+P T
Sbjct: 446 -----LQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE---DSVPDT 485
Score = 125 (49.1 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
LHGD R L++FK G+VR L+ +++ARG+D+ V+N+ LP + +Y HR
Sbjct: 590 LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR 647
Score = 109 (43.4 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV-GPLKDKSSNGNGESGKKT 190
+PT++Q+ +IP IL DV++ + TGSGKT A+ +P++ V LKD+ G++ KT
Sbjct: 68 LPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKT 127
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 208 (78.3 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 62/197 (31%), Positives = 96/197 (48%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ IP ILK +++ + TGSGKTL YLLPI+ ++ +D + G + I
Sbjct: 174 PTTVQLQTIPKILKGRNILCAAETGSGKTLTYLLPIIHRLQ--EDLLA------GSERSI 225
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
AV++ PSREL Q V + + + V+ + GG + A + +P I+V TPG
Sbjct: 226 RAVVIVPSRELAEQ-VNSVARSVSERFGLVVKVVGGGRGVGTIKAAFARGQPDILVSTPG 284
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAM 312
+ + + FLV+DE D + +F + +I+ H A+ LA
Sbjct: 285 ALLKALWKRFISLSELYFLVIDEADTMFDDSFAGMLEKILSHT---QVASRLSETIGLAR 341
Query: 313 RAERQTIMVSATVPFSV 329
+A Q ++V AT P V
Sbjct: 342 KA--QLVVVGATFPGGV 356
Score = 143 (55.4 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 39/151 (25%), Positives = 68/151 (45%)
Query: 384 LPPALKHYYCVTKLQHKVDTLRRCVHALDAQT--VIAFMNNTRQLKDAVFKLEARGMKAA 441
L P +K + K K+ L + + + + V+ F N+ + + LE G+
Sbjct: 380 LMPHIKQTFLRVKGADKILELHQALKRAEQEQKGVLVFCNSASTVNWLGYSLEEMGVGHM 439
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501
L G++ R + F+ G+ VLV ++++RGLD L+VN D P Y HRA
Sbjct: 440 RLQGEMPAAMREGVFRDFQRGKTNVLVCTDIASRGLDTQRVGLIVNYDFPESQTDYIHRA 499
Query: 502 XXXXXXXXXXX--VVSICEEP-EVFVVKKMQ 529
V+S +P +V +V+K++
Sbjct: 500 GRVGRAGGSEGGEVLSFVTQPWDVELVQKIE 530
>UNIPROTKB|J3KT12 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1
ProteinModelPortal:J3KT12 Ensembl:ENST00000582746 Uniprot:J3KT12
Length = 341
Score = 197 (74.4 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 50/164 (30%), Positives = 88/164 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 52 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 101
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 102 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 158 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 120 (47.3 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 27/98 (27%), Positives = 50/98 (51%)
Query: 378 KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
K+ + +L + Y V + + K+DTL L + F+N R++ K+ AR
Sbjct: 237 KKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 296
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+ +HGD+ + R +++F++G RVL+T +L R
Sbjct: 297 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLNR 334
Score = 58 (25.5 bits), Expect = 5.5e-24, Sum P(3) = 5.5e-24
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL-LVQAKNVIPLESM 354
+ + Q +++SAT+P V+ + + DP+ ++ K + LE +
Sbjct: 203 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI 246
Score = 39 (18.8 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 457 KKFKNGEVRVLVTNE-LSARGL 477
KKF +R+LV E L+ G+
Sbjct: 225 KKFMRDPIRILVKKEELTLEGI 246
Score = 38 (18.4 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 547 VIGKEEEKTLEAVR 560
++ K+EE TLE +R
Sbjct: 234 ILVKKEELTLEGIR 247
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 227 (85.0 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 74/205 (36%), Positives = 103/205 (50%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ IP I D++ + TGSGKT A+LLPIL + ++G S K ++I
Sbjct: 300 PTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRF------MTDGVAAS-KFSEI 352
Query: 193 ---EAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
EA+IVAP+REL QI E +K G + V + GG N + K ++
Sbjct: 353 QEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVV--VYGGINTGYTIREVLKGCN-VLC 409
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGR+ ++ GK+ R+LVLDE D +L F M ++V A+P P
Sbjct: 410 ATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLV--------ASPGMPS- 460
Query: 309 ALAMRAERQTIMVSATVPFSVIRAA 333
+ ERQT+M SAT P + R A
Sbjct: 461 ----KEERQTLMFSATYPEDIQRMA 481
Score = 126 (49.4 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 32/103 (31%), Positives = 50/103 (48%)
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKD--AVFKLEARGMKAAELHGDLGKLARSTTLK 457
K D L + A + + F+ T++ D A F + + + +HGD + R L
Sbjct: 516 KRDQLLELLRATGNERTMVFVE-TKRSADFIATFLCQEK-ISTTSIHGDREQREREKALS 573
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
F+ G VLV ++ARGLD+ + VVN D+P+ Y HR
Sbjct: 574 DFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHR 616
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 230 (86.0 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 57/166 (34%), Positives = 88/166 (53%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ VPT +Q IP L D+V + TGSGKT A+LLP++ KV L + +
Sbjct: 229 YEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIMKV--LNETETPS------- 279
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I+AP+REL +QI R+ K+L+ LVGG Q L K +++
Sbjct: 280 ----ALILAPTRELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHRL-KQSVKVIIA 334
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
TPGR+ EI + HG + +V+DE+D +L F++ + I+E +
Sbjct: 335 TPGRLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDI 380
Score = 110 (43.8 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLV 485
L DAV K+ G++ +H + ++ R+ L+ + V+V+ + RGLD+ LV
Sbjct: 466 LSDAVHKIT--GLQCTSMHSEKSQVERTAILQGLLQEKYEVIVSTGVLGRGLDLVNVKLV 523
Query: 486 VNLDLPTDSIHYAHR 500
VN D+P+ Y H+
Sbjct: 524 VNFDMPSSMDEYVHQ 538
Score = 50 (22.7 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 315 ERQTIMVSATVPFSVIRAARSWGHD 339
+ QTI+VSAT+P + A H+
Sbjct: 383 DHQTILVSATIPVGIEHLANQLLHN 407
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 209 (78.6 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 58/163 (35%), Positives = 83/163 (50%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT VQ AIP +L D++ + TGSGKT A+ PI+S G +KD+ +
Sbjct: 174 PTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS--GIMKDQHVE-RPRGSRAVYP 230
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
AVI++P+REL QI E KK + K V GG +Q L + I+V TPG
Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAY-GGTPIHQQLRELERGCD-ILVATPG 288
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
R+ ++ ++ RFL LDE D +L F + +IVE +
Sbjct: 289 RLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331
Score = 143 (55.4 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 35/106 (33%), Positives = 49/106 (46%)
Query: 396 KLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARST 454
K H +D L D Q++ T++ D + L A +HGD + R
Sbjct: 390 KRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREV 449
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
L+ FK G +LV +++ARGLD+ VVN DLP D Y HR
Sbjct: 450 ALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 495
Score = 143 (55.4 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 48/140 (34%), Positives = 67/140 (47%)
Query: 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253
AVI++P+REL QI E KK + K V GG +Q L + I+V TPGR
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAY-GGTPIHQQLRELERGCD-ILVATPGR 289
Query: 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMR 313
+ ++ ++ RFL LDE D +L F + +IVE + P P R
Sbjct: 290 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM-----P--P------R 336
Query: 314 AERQTIMVSATVPFSVIRAA 333
RQT++ SAT P + R A
Sbjct: 337 GVRQTMLFSATFPSQIQRLA 356
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 199 (75.1 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 50/166 (30%), Positives = 86/166 (51%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGP--LKDKSSNGNGESG 187
+ PT VQ AIP++L+ D+++ + TG+GKT + LPIL ++ P + DKS G
Sbjct: 21 YTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR----HG 76
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV-GGANRSRQEEALRKNKPAI 246
+ +++ P+REL Q+ K L D K V + GG + Q +A+ + +
Sbjct: 77 PRQP-RVLVLTPTRELAAQVHESFK--LYARDLKFVSACIFGGVGMNPQVQAMSRGVD-V 132
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
+V PGR+ +++ G + LVLDE D +L F + +++
Sbjct: 133 LVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVL 178
Score = 153 (58.9 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 35/132 (26%), Positives = 60/132 (45%)
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
HK L + + V+ F L+ G+ A +HG+ + AR+ L
Sbjct: 235 HKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALAD 294
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICE 518
FK G+VR++V +++ARGLD+ + VVN +LP Y HR +S+
Sbjct: 295 FKAGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVA 354
Query: 519 EPEVFVVKKMQK 530
E ++K +++
Sbjct: 355 PDEEKLLKSIER 366
Score = 42 (19.8 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 307 KSALA-MRAERQTIMVSATVPFSVIRAARSWGHDP 340
K LA + A+RQ ++ SAT + A H+P
Sbjct: 175 KKVLARLPAKRQNLLFSATFSNDITSLAGKLLHNP 209
WARNING: HSPs involving 605 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 560 501 0.00085 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 855
No. of states in DFA: 608 (65 KB)
Total size of DFA: 250 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.37u 0.13s 36.50t Elapsed: 00:00:02
Total cpu time: 36.42u 0.13s 36.55t Elapsed: 00:00:02
Start: Fri May 10 05:33:19 2013 End: Fri May 10 05:33:21 2013
WARNINGS ISSUED: 2