BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008602
(560 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225426815|ref|XP_002276531.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial
[Vitis vinifera]
gi|147852111|emb|CAN82264.1| hypothetical protein VITISV_009282 [Vitis vinifera]
Length = 557
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/561 (78%), Positives = 495/561 (88%), Gaps = 5/561 (0%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
M AL STRLLLLVG+ LP+ K VSR H VRFLS+V R HGPLTLASLG+KSEFE
Sbjct: 1 MQALASTRLLLLVGDCLPVGKLLHVSRF---HGSVRFLSRVDREHGPLTLASLGFKSEFE 57
Query: 61 PTNKNKSNKPKKHSPI-EIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPP 119
T NK+ + + + E+ K KVKAVRS+ +KA G KKS+EIE+APFAA SF ELGLPP
Sbjct: 58 TTKGNKTKPLHQLNAVPEVSKNKVKAVRSNEMKAVGTKKSIEIEAAPFAAKSFSELGLPP 117
Query: 120 LLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKS 179
LL++RLEREGF+VPT+VQSAAIP+ILKNHDVVIQSYTGSGKTLAYLLPILS+VGPLK+K
Sbjct: 118 LLIDRLEREGFSVPTDVQSAAIPTILKNHDVVIQSYTGSGKTLAYLLPILSEVGPLKNKP 177
Query: 180 SNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEAL 239
N + S K +IEAVI+APSRELGMQIVRE++KLLGP+DKK VQQLVGGANR+RQEEAL
Sbjct: 178 PNADNTSRNKMEIEAVILAPSRELGMQIVREVEKLLGPADKKLVQQLVGGANRTRQEEAL 237
Query: 240 RKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRS 299
+KNKP+IVVGTPGRIAE+SA+GKL THGCR+LVLDE+DELLSFNFRE MHRI+EHVGRRS
Sbjct: 238 KKNKPSIVVGTPGRIAEMSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRS 297
Query: 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGP 359
GA+P KS L R ERQTIMVSATVPFSVIRAARSWG DPLLVQAK+VIPLES+P TGP
Sbjct: 298 GADPHGTKSPLERRTERQTIMVSATVPFSVIRAARSWGRDPLLVQAKSVIPLESLP-TGP 356
Query: 360 GNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAF 419
NL GP S SSS+S+LQ + A + LPP LKHY+CVTKLQHK+DTLRRCVHALDA+ VIAF
Sbjct: 357 VNLLGPTSTSSSSSSLQTQAAAEGLPPVLKHYFCVTKLQHKIDTLRRCVHALDAKCVIAF 416
Query: 420 MNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDV 479
MN+T++LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDV
Sbjct: 417 MNHTKRLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDV 476
Query: 480 AECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQAC 539
+ECDLVVNLDLPTDSIHYAHRAGRTGRLGR+GTVV+ICEEPEVFVVKK+Q+QL VPIQAC
Sbjct: 477 SECDLVVNLDLPTDSIHYAHRAGRTGRLGRKGTVVNICEEPEVFVVKKLQRQLGVPIQAC 536
Query: 540 EFTEGRLVIGKEEEKTLEAVR 560
EFTEG+LV +EEKTLEAV+
Sbjct: 537 EFTEGKLVATTDEEKTLEAVK 557
>gi|224071778|ref|XP_002303572.1| predicted protein [Populus trichocarpa]
gi|222841004|gb|EEE78551.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/564 (75%), Positives = 484/564 (85%), Gaps = 5/564 (0%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRH-HGPLTLASLGYKSEF 59
MP+LVS RLL LVGE++ L K S S C VRF S+V R + PLTLA+LG+ +EF
Sbjct: 1 MPSLVSPRLLFLVGETIHLKKLSRGSSSALCQRSVRFFSRVDRDKNAPLTLANLGFNTEF 60
Query: 60 EPTNKNKSNK---PKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELG 116
E T KNK NK K + PIE PK++ K S+ + VKK+LEIESAPFAA SF ELG
Sbjct: 61 ETTTKNKRNKLENVKVNYPIEAPKSREKVATSNKSRVVRVKKTLEIESAPFAAKSFSELG 120
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L+ERLEREGFNVPT+VQSAAIP+ILKNHD VIQSYTGSGKTLAY+LPILS+VGPLK
Sbjct: 121 LPPPLIERLEREGFNVPTDVQSAAIPTILKNHDAVIQSYTGSGKTLAYVLPILSEVGPLK 180
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+ S+ + E+GKKT+IEAV+VAPSREL MQIVRE++KLLGP +K+ VQQLVGGANRSRQE
Sbjct: 181 NNYSSADKETGKKTEIEAVVVAPSRELAMQIVREVEKLLGPENKRVVQQLVGGANRSRQE 240
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
EAL+KNKP IVVGTPGRIAEISAAGKLHTHGCRFLVLDE+DELLSFNFR+ +HRI+EHVG
Sbjct: 241 EALKKNKPLIVVGTPGRIAEISAAGKLHTHGCRFLVLDEVDELLSFNFRQDIHRILEHVG 300
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
RRSGA+P+ K++L A+R+TIMVSATVPFSV+RAARSW DPLLVQAK+VIPLES+ A
Sbjct: 301 RRSGADPQGQKNSLVRWADRRTIMVSATVPFSVVRAARSWACDPLLVQAKSVIPLESL-A 359
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
G NLS P S S+S+SNLQ + QSLPPALKHYYCVT+LQHKVDTLRRCVHAL+AQ+V
Sbjct: 360 PGTVNLSSPTSSSNSDSNLQHQATVQSLPPALKHYYCVTRLQHKVDTLRRCVHALNAQSV 419
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
IAFMN+TRQLKDAVFKLEARGMKAAELHGDLGKL RST LKKFK+GEVRVLVTNEL+ARG
Sbjct: 420 IAFMNHTRQLKDAVFKLEARGMKAAELHGDLGKLGRSTILKKFKSGEVRVLVTNELAARG 479
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPI 536
LDV ECDLVVNLDLPTDSIHYAHRAGRTGRLGR+GTVV+ICEE EVFVVKK+QKQL VPI
Sbjct: 480 LDVPECDLVVNLDLPTDSIHYAHRAGRTGRLGRKGTVVTICEEREVFVVKKLQKQLGVPI 539
Query: 537 QACEFTEGRLVIGKEEEKTLEAVR 560
AC+FTEG+L++ +EEK EA+R
Sbjct: 540 PACDFTEGKLIVTDKEEKHAEALR 563
>gi|255537355|ref|XP_002509744.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223549643|gb|EEF51131.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 595
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/558 (78%), Positives = 479/558 (85%), Gaps = 5/558 (0%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
MPALVSTRLL L G S PL K VSR WCH V F SQV + PLTL SLG KS+FE
Sbjct: 32 MPALVSTRLLFLFGLSSPLPKLLRVSRTGWCHRNVLFYSQVRQDQAPLTLESLGIKSQFE 91
Query: 61 P----TNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELG 116
T NK K K++S I++P++KVK V + G + V KSLE E+A FAA SF ELG
Sbjct: 92 RKEKITKTNKHEKFKQNSAIDVPRSKVKVV-NKGTRDVSVNKSLEDETALFAAKSFSELG 150
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPPLLLERLE EGF VPTEVQSAAIP+ILKNHDVVIQSYTGSGKTLAYLLPILS+VGPL
Sbjct: 151 LPPLLLERLESEGFKVPTEVQSAAIPTILKNHDVVIQSYTGSGKTLAYLLPILSEVGPLI 210
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
DKSS GN E GKK++IEAVIVAPSREL MQIVRE++KLLGP++KKAVQQLVGGANRSRQE
Sbjct: 211 DKSSKGNEEVGKKSEIEAVIVAPSRELAMQIVREVEKLLGPANKKAVQQLVGGANRSRQE 270
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
EALRKNKPAI+VGTPGRI+EISAAGKLHTHGCR+LVLDE+DELLSFNFRE +HRI++HVG
Sbjct: 271 EALRKNKPAIIVGTPGRISEISAAGKLHTHGCRYLVLDEVDELLSFNFREDVHRILDHVG 330
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
RRS A+ P S LA RA RQTI+VSATVPFSVIRAARSWGHDPLLVQAK VIPLES+PA
Sbjct: 331 RRSNADSHGPNSQLARRAARQTILVSATVPFSVIRAARSWGHDPLLVQAKTVIPLESVPA 390
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+ P N SGP+S SSSNSN Q + A QSLPPALKHYYCVT++QHKVDTLRRCVHALDA++V
Sbjct: 391 SRPVNASGPISSSSSNSNPQPQAAIQSLPPALKHYYCVTRIQHKVDTLRRCVHALDAKSV 450
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
IAFMN TRQLKDAVFKLEARGMKAAELHGDLGKL+RST LKKFKNGEVRVLVTNELSARG
Sbjct: 451 IAFMNQTRQLKDAVFKLEARGMKAAELHGDLGKLSRSTILKKFKNGEVRVLVTNELSARG 510
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPI 536
LDV ECDLVVNLDLPTDSIHYAHRAGRTGRLGR+GTVV+ICEE EVFVVKKMQKQL + I
Sbjct: 511 LDVPECDLVVNLDLPTDSIHYAHRAGRTGRLGRKGTVVTICEESEVFVVKKMQKQLGITI 570
Query: 537 QACEFTEGRLVIGKEEEK 554
CEFTEG+L + EEEK
Sbjct: 571 PTCEFTEGKLSMTVEEEK 588
>gi|449460509|ref|XP_004147988.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47,
mitochondrial-like [Cucumis sativus]
gi|449519613|ref|XP_004166829.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47,
mitochondrial-like [Cucumis sativus]
Length = 555
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/554 (71%), Positives = 467/554 (84%), Gaps = 1/554 (0%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
M ALV RL L GES P HK V R + H+GV L++ +HGPLTLASLG+KSEF+
Sbjct: 1 MNALVPGRLFLFAGESFPFHKLPQVCRSTFFHSGVFCLNKAEVNHGPLTLASLGFKSEFQ 60
Query: 61 PTNKNKSNKPKK-HSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPP 119
T+K++ NK + +P +I K+KVK VR++ K G + S+EI+ APFAA SF ELGL
Sbjct: 61 ETDKSQVNKVAELDTPRDISKSKVKIVRNNEKKVGGARSSVEIQMAPFAAKSFSELGLAD 120
Query: 120 LLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKS 179
L+ERLE EGF VPT++QSA+IP+ILK HDVVIQSYTGSGKTLAY+LPILS++GP K+
Sbjct: 121 ALIERLESEGFTVPTDIQSASIPTILKKHDVVIQSYTGSGKTLAYVLPILSEIGPFKNTI 180
Query: 180 SNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEAL 239
SN N E GKK +IEAVIVAPSRELGMQIVRE++K+LGP+++K VQQLVGGANRSRQEEAL
Sbjct: 181 SNYNDEPGKKKEIEAVIVAPSRELGMQIVREVEKILGPANRKVVQQLVGGANRSRQEEAL 240
Query: 240 RKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRS 299
+KNKP+IVVGTPGRIAEISA GKLHTHGC FL+LDE+DELLSFNFRE MHRI+EHVGRRS
Sbjct: 241 KKNKPSIVVGTPGRIAEISATGKLHTHGCSFLILDEVDELLSFNFREDMHRILEHVGRRS 300
Query: 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGP 359
GAN R ++ A RAERQ +MVSATVPFSV+RAA+SWG DPLLV+A V PLES+P +GP
Sbjct: 301 GANSRGSENTQARRAERQLVMVSATVPFSVVRAAKSWGFDPLLVKANKVAPLESVPPSGP 360
Query: 360 GNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAF 419
NL P SGS+S+S LQ++ A +LPP+LKHYYC ++LQHKVD LRRC+HALDA+ V+ F
Sbjct: 361 VNLRAPSSGSTSDSTLQSQTAIDTLPPSLKHYYCTSRLQHKVDMLRRCIHALDAKFVMVF 420
Query: 420 MNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDV 479
MN+T+QL+D VFKL+ARG+ AAELHGDLGKLARSTTLK FKNGE+RVLVTNELSARGLD+
Sbjct: 421 MNHTKQLRDVVFKLKARGVTAAELHGDLGKLARSTTLKSFKNGELRVLVTNELSARGLDI 480
Query: 480 AECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQAC 539
AECDLVVNLDLPTDSIHYAHRAGRTGRLGR GTV+SICEEPEVFVVKK+QKQL VPI AC
Sbjct: 481 AECDLVVNLDLPTDSIHYAHRAGRTGRLGRMGTVLSICEEPEVFVVKKLQKQLGVPILAC 540
Query: 540 EFTEGRLVIGKEEE 553
+F EG+LV+ +EE+
Sbjct: 541 DFNEGKLVLNEEEK 554
>gi|291464067|gb|ADE05571.1| increased size exclusion limit 1a [Nicotiana benthamiana]
Length = 551
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/557 (70%), Positives = 461/557 (82%), Gaps = 12/557 (2%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
MP LV TR LLLVG+SL L S +R+ + VRFLS G LTLASLG KSE +
Sbjct: 1 MPVLVLTRALLLVGDSLSLRNVSQFTRIAPFRDKVRFLSD----SGSLTLASLGLKSEVK 56
Query: 61 PTNKNKSNKPKKH-SPIEIPKAKVKAVRSDGIKAAGVKKS--LEIESAPFAANSFLELGL 117
+ N+ NK ++ S IE+PK++VK + G K +K+ ++I++APFAA SF ELG
Sbjct: 57 TVSANEKNKLQQGVSTIEVPKSRVKK-KVSGNKTGLIKERNPIDIKTAPFAAESFSELGP 115
Query: 118 PPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKD 177
PPLL+ERLE EGF VPT+VQ+AA+P++LKNHDVVIQSYTGSGKTLAY+LPILS+ GPL
Sbjct: 116 PPLLVERLEEEGFTVPTDVQAAAVPTVLKNHDVVIQSYTGSGKTLAYVLPILSQAGPLSG 175
Query: 178 KSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEE 237
+ SNG E+G K IEAVIVAPSRELGMQIVRE++KLLGP+DKK VQQLVGGANRSRQEE
Sbjct: 176 EISNG-CETGNKVGIEAVIVAPSRELGMQIVREVEKLLGPADKKLVQQLVGGANRSRQEE 234
Query: 238 ALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGR 297
ALRKNKPAIVVGTPGRIAEISAAGKL THGCR+LVLDE+D+LL+ NFRE M RI++HVGR
Sbjct: 235 ALRKNKPAIVVGTPGRIAEISAAGKLPTHGCRYLVLDEVDQLLAVNFREDMQRILDHVGR 294
Query: 298 RSGANPRE---PKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354
R GA+ E P S L R+ RQTIMVSATVPFSVIRAARSWG DPLLVQA V+PLES+
Sbjct: 295 RPGASGGESNSPNSPLVKRSARQTIMVSATVPFSVIRAARSWGCDPLLVQANKVVPLESV 354
Query: 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414
P +GP N+SG +SS+SN+QA + QSLPP L+HYY +T++QHKVD LRRCVHALDA+
Sbjct: 355 PPSGPVNISGTPPTASSSSNVQAMPSVQSLPPNLQHYYTITRIQHKVDMLRRCVHALDAK 414
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
VIAFMN+T+QLKDAVFKLEARGMKAAELHGDL KL RST LKKF+NGEVRVL+TNELSA
Sbjct: 415 CVIAFMNHTKQLKDAVFKLEARGMKAAELHGDLSKLVRSTILKKFRNGEVRVLLTNELSA 474
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534
RGLD+ ECDLVVNL LPTDS+HYAHRAGRTGRLGR+GTVV+ICE+PEVFVVKK+QKQL++
Sbjct: 475 RGLDLPECDLVVNLGLPTDSVHYAHRAGRTGRLGRKGTVVTICEDPEVFVVKKLQKQLSL 534
Query: 535 PIQACEFTEGRLVIGKE 551
IQACEF++G LVI ++
Sbjct: 535 SIQACEFSDGNLVITED 551
>gi|356557070|ref|XP_003546841.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47,
mitochondrial-like [Glycine max]
Length = 562
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/562 (70%), Positives = 460/562 (81%), Gaps = 11/562 (1%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
MP L+S R LLLVGESL + + SR H V+ +SQV HHG LT++ +G ++E E
Sbjct: 1 MPTLISYRFLLLVGESLHMRRALATSRSVLLHTSVKCMSQVEPHHGSLTVSGIGLQTETE 60
Query: 61 PTNKNKSNKPKK-HSPIEIPKAKVK--AVRSDGIKAAGVKKSLEIESAPFAANSFLELGL 117
P N++K+NK K SP E K+K K + KA V + +IESAPFAA SF ELGL
Sbjct: 61 PRNRSKTNKVKPLGSPSENRKSKGKPLGINEKKKKAFRVVEKQQIESAPFAAESFSELGL 120
Query: 118 PPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKD 177
P +L+ERLE+EGF VPTEVQSAA+P+IL NHDV+IQSYTGSGKTLAYLLPILS VGPL+
Sbjct: 121 PHVLIERLEKEGFTVPTEVQSAAVPTILNNHDVIIQSYTGSGKTLAYLLPILSVVGPLRG 180
Query: 178 KSSNGN---GESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR 234
K+ GN GESGKK IEAVIVAPSRELGMQIVRE +K+LG +K+ VQQLVGGANR+R
Sbjct: 181 KTPEGNSDGGESGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTR 240
Query: 235 QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEH 294
QE+AL+KNKPAIVVGTPGRIAE+SA+GKL THGCR+LVLDE+DELLSFNFRE MHRI+EH
Sbjct: 241 QEDALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEH 300
Query: 295 VGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354
VGRRSGA+P ++ + +AERQ IMVSATVPFSV+RAARSWG DPLLVQA V PLE++
Sbjct: 301 VGRRSGADP----NSDSRKAERQLIMVSATVPFSVVRAARSWGCDPLLVQANKVAPLETV 356
Query: 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414
+ P +LS SS +S + + A +SLPPALKHYY VT++QHKVD LRRC+HALDA+
Sbjct: 357 SPSEPISLSRSSPSSSPSSAMPSPAAVESLPPALKHYYFVTRVQHKVDVLRRCIHALDAK 416
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
VIAFMN+T+QLKD VFKLEARGMKA ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA
Sbjct: 417 FVIAFMNHTKQLKDVVFKLEARGMKAMELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 476
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534
RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGR GTVV+ICEE EVFVVKK+QKQLA+
Sbjct: 477 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEESEVFVVKKLQKQLAI 536
Query: 535 PIQACEFTEGRLVIGKEEEKTL 556
PI AC+F EG+ ++ EEEKT+
Sbjct: 537 PIAACDFAEGKFLV-TEEEKTV 557
>gi|291464069|gb|ADE05572.1| increased size exclusion limit 1b [Nicotiana benthamiana]
Length = 548
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/554 (69%), Positives = 458/554 (82%), Gaps = 9/554 (1%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
MP LV TR LLLVG+SL L S +R+ + V FLS G LTLASLG K+E +
Sbjct: 1 MPVLVLTRALLLVGDSLFLRNVSPFTRIAPFRDKVGFLSD----SGSLTLASLGLKNEVK 56
Query: 61 PTNKNKSNKPKKH-SPIEIPKAKVKAVRSDGIKAAGVKKS--LEIESAPFAANSFLELGL 117
N+ +K ++ S IE+PK++VK + G K +K+ ++I++APFAA SF ELGL
Sbjct: 57 TVGANEKDKLRQGVSTIEVPKSRVKK-KVSGNKTGLIKERNPIDIKTAPFAAESFSELGL 115
Query: 118 PPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKD 177
PPLL+ERLE+EGF +PT+VQ+AA+P++LKNHDVVIQSYTGSGKTLAY+LPILS+VGPL
Sbjct: 116 PPLLVERLEKEGFTIPTDVQAAAVPTVLKNHDVVIQSYTGSGKTLAYVLPILSQVGPLSG 175
Query: 178 KSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEE 237
+ SNG+ E+G K IEAVIVAPSRELGMQIVRE++KLLGP+DKK VQQLVGGANRSRQEE
Sbjct: 176 EISNGS-ETGNKAGIEAVIVAPSRELGMQIVRELEKLLGPADKKLVQQLVGGANRSRQEE 234
Query: 238 ALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGR 297
ALRKNKPAIVVGTPG IAEISAAGKL THGC +LVLDE+D+LL+ NFRE M RI++HVGR
Sbjct: 235 ALRKNKPAIVVGTPGWIAEISAAGKLPTHGCCYLVLDEVDQLLAVNFREDMQRILDHVGR 294
Query: 298 RSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
R GA E S L R+ RQTIMVSATVPFSVIRAARSWG +PLLVQA V+ LES+P++
Sbjct: 295 RPGACRGESSSPLVKRSARQTIMVSATVPFSVIRAARSWGCNPLLVQANKVVALESVPSS 354
Query: 358 GPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVI 417
GP N+SG +SS+SN+QA + QSLPP L+HYY +T++QHKVD LRRCVHALDA+ VI
Sbjct: 355 GPVNISGTPPTASSSSNVQAMPSVQSLPPNLQHYYTITRIQHKVDMLRRCVHALDAKCVI 414
Query: 418 AFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGL 477
AFMN+T+QLKDAVFKLEARGMKAAELHGDL KL RST LKKF+NGEVRVL+TNELSARGL
Sbjct: 415 AFMNHTKQLKDAVFKLEARGMKAAELHGDLSKLVRSTILKKFRNGEVRVLLTNELSARGL 474
Query: 478 DVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQ 537
D+ ECDLVVNL LPTDS+HYAHRAGRTGRLGR+GTVV ICEEPEVFVVKK+QKQL++ IQ
Sbjct: 475 DLPECDLVVNLGLPTDSVHYAHRAGRTGRLGRKGTVVIICEEPEVFVVKKLQKQLSLSIQ 534
Query: 538 ACEFTEGRLVIGKE 551
ACEF++G LVI ++
Sbjct: 535 ACEFSDGNLVITED 548
>gi|356525722|ref|XP_003531472.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47A-like [Glycine
max]
Length = 562
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/562 (69%), Positives = 460/562 (81%), Gaps = 11/562 (1%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCH-NGVRFLSQVGRHHGPLTLASLGYKSEF 59
MP L+++R LLLVGESL + + SR H + V+ +SQV HHG +TL+S+G ++E
Sbjct: 1 MPTLITSRFLLLVGESLHMRRGLATSRSVLLHTSSVQCMSQVEPHHGSVTLSSIGLQTET 60
Query: 60 EPTNKNKSNKPKK-HSPIEIPKAKVKAVR-SDGIKAAGVKKSLEIESAPFAANSFLELGL 117
EP N++K+NK K SP E K+K K ++ K V + +IESAPFAANSF ELGL
Sbjct: 61 EPRNRSKTNKVKPLGSPSENLKSKGKPFGINEKKKTFRVVEKQQIESAPFAANSFSELGL 120
Query: 118 PPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKD 177
P +L+ERLE+EGF VPTEVQSAA+P+IL N DV+IQSYTGSGKTLAYLLPILS VGPL+
Sbjct: 121 PLVLIERLEKEGFTVPTEVQSAAVPTILNNRDVIIQSYTGSGKTLAYLLPILSVVGPLRG 180
Query: 178 KSSNGN---GESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR 234
+ G+ GE GKK IEAVIVAPSRELGMQIVRE +K+LG +K+AVQQLVGGANR+R
Sbjct: 181 EIGEGDSDGGECGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRAVQQLVGGANRTR 240
Query: 235 QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEH 294
QE+AL+KNKPAIVVGTPGRIAE+SA+GKL TH CRFLVLDE+DELLSFNFRE MHRI+EH
Sbjct: 241 QEDALKKNKPAIVVGTPGRIAELSASGKLRTHSCRFLVLDEVDELLSFNFREDMHRILEH 300
Query: 295 VGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354
VGRRSGA+ +++ + +AERQ IMVSATVPFSV+RAARSWG DPLLVQAK V PL ++
Sbjct: 301 VGRRSGAD----QNSDSRKAERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVAPLGTV 356
Query: 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414
+ P +LS SS + + + A +SLPPALKHYY VT++QHKVD LRRC+HALDA+
Sbjct: 357 SPSEPISLSQSSPSSSPSLAMPSPAAVESLPPALKHYYFVTRVQHKVDVLRRCIHALDAK 416
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
VIAFMN+T+QLKD VFKLEARGMKA ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA
Sbjct: 417 FVIAFMNHTKQLKDVVFKLEARGMKAMELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 476
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534
RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGR GTVV+ICEE EVFVVKK+QKQL +
Sbjct: 477 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEESEVFVVKKLQKQLGI 536
Query: 535 PIQACEFTEGRLVIGKEEEKTL 556
PI +C+F EG+L++ EEEKT+
Sbjct: 537 PIASCDFAEGKLLVS-EEEKTV 557
>gi|297844170|ref|XP_002889966.1| EMB1586 [Arabidopsis lyrata subsp. lyrata]
gi|297335808|gb|EFH66225.1| EMB1586 [Arabidopsis lyrata subsp. lyrata]
Length = 551
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/556 (64%), Positives = 439/556 (78%), Gaps = 6/556 (1%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
M A STR L+L+ E K S S + RFL V + G LTLASL ++
Sbjct: 1 MAASASTRFLVLLKEFSAFRKISWNSAATNFYRQSRFLCHVAKEDGSLTLASLDLGNKPR 60
Query: 61 PTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPL 120
K+K+ K + E+ + K+KAVR+D +K KK EI S F+A SF ELGLP
Sbjct: 61 KFGKSKAMKLEGSFVTEMGQGKLKAVRNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDS 120
Query: 121 LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180
LL+ LEREGF+VPT+VQSAA+P+I+K HD VIQSYTGSGKTLAYLLPILS++GPL +KS
Sbjct: 121 LLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSR 180
Query: 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR 240
+ + E+ K+TDI+A+IVAPSRELGMQIVRE++KLLGP ++ VQQLVGGANR RQEEAL+
Sbjct: 181 SSHSENDKRTDIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALK 240
Query: 241 KNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300
KNKPAIVVGTPGRIAEIS +GKLHTHGCRFLVLDE+DELLSFNFRE +HRI+EHVG+RSG
Sbjct: 241 KNKPAIVVGTPGRIAEISKSGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSG 300
Query: 301 ANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPG 360
A PK + RA RQTI+VSATVPFSVIRAA+SW H+P+LVQA V PL+++ + P
Sbjct: 301 AG---PKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPV 357
Query: 361 NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
P ++S +N Q + QSLPPALKHYYC++K QHKVDTLRRCVHALDAQ+VIAFM
Sbjct: 358 ISFTP---TTSEANGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQSVIAFM 414
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
N++RQLKD V+KLEARGM +AE+HGDLGKL RST LKKFKNGE++VLVTNELSARGLDVA
Sbjct: 415 NHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVA 474
Query: 481 ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE 540
ECDLVVNL+LPTD++HYAHRAGRTGRLGR+GTVV++CEE +VF+VKKM+KQL +P CE
Sbjct: 475 ECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFLYCE 534
Query: 541 FTEGRLVIGKEEEKTL 556
F +G LV+ +E++ +
Sbjct: 535 FVDGELVVTEEDKAII 550
>gi|79342966|ref|NP_172737.2| DEAD-box ATP-dependent RNA helicase 47 [Arabidopsis thaliana]
gi|108861896|sp|Q8W4E1.2|RH47_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 47,
mitochondrial; AltName: Full=Protein EMBRYO DEFECTIVE
1586; AltName: Full=Protein INCREASED SIZE EXCLUSION
LIMIT 1; Flags: Precursor
gi|12056979|gb|AAF88089.2|AC025417_17 T12C24.30 [Arabidopsis thaliana]
gi|51969316|dbj|BAD43350.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51969564|dbj|BAD43474.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51969644|dbj|BAD43514.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51969728|dbj|BAD43556.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51970230|dbj|BAD43807.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|51970530|dbj|BAD43957.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|110739597|dbj|BAF01707.1| hypothetical protein [Arabidopsis thaliana]
gi|110740002|dbj|BAF01905.1| hypothetical protein [Arabidopsis thaliana]
gi|110740576|dbj|BAE98393.1| hypothetical protein [Arabidopsis thaliana]
gi|332190805|gb|AEE28926.1| DEAD-box ATP-dependent RNA helicase 47 [Arabidopsis thaliana]
Length = 551
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/556 (63%), Positives = 437/556 (78%), Gaps = 6/556 (1%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
M A STR L+L+ + K S H RFL V + G LTLASL ++
Sbjct: 1 MAASTSTRFLVLLKDFSAFRKISWTCAATNFHRQSRFLCHVAKEDGSLTLASLDLGNKPR 60
Query: 61 PTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPL 120
K K+ K + E+ + KV+AV++D +K KK EI S F+A SF ELGLP
Sbjct: 61 KFGKGKAMKLEGSFVTEMGQGKVRAVKNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDS 120
Query: 121 LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180
LL+ LEREGF+VPT+VQSAA+P+I+K HD VIQSYTGSGKTLAYLLPILS++GPL +KS
Sbjct: 121 LLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSR 180
Query: 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR 240
+ + E+ K+T+I+A+IVAPSRELGMQIVRE++KLLGP ++ VQQLVGGANR RQEEAL+
Sbjct: 181 SSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALK 240
Query: 241 KNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300
KNKPAIVVGTPGRIAEIS GKLHTHGCRFLVLDE+DELLSFNFRE +HRI+EHVG+RSG
Sbjct: 241 KNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSG 300
Query: 301 ANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPG 360
A PK + RA RQTI+VSATVPFSVIRAA+SW H+P+LVQA V PL+++ + P
Sbjct: 301 AG---PKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAP- 356
Query: 361 NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
++ ++S ++ Q + QSLPPALKHYYC++K QHKVDTLRRCVHALDAQ+VIAFM
Sbjct: 357 --VMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQSVIAFM 414
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
N++RQLKD V+KLEARGM +AE+HGDLGKL RST LKKFKNGE++VLVTNELSARGLDVA
Sbjct: 415 NHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVA 474
Query: 481 ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE 540
ECDLVVNL+LPTD++HYAHRAGRTGRLGR+GTVV++CEE +VF+VKKM+KQL +P CE
Sbjct: 475 ECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFLYCE 534
Query: 541 FTEGRLVIGKEEEKTL 556
F +G LV+ +E++ +
Sbjct: 535 FVDGELVVTEEDKAII 550
>gi|17065084|gb|AAL32696.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|21387213|gb|AAM48010.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
Length = 551
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/556 (63%), Positives = 436/556 (78%), Gaps = 6/556 (1%)
Query: 1 MPALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFE 60
M A STR L+L+ + K S H RFL V + G LTLASL ++
Sbjct: 1 MAASTSTRFLVLLKDFSAFRKISWTCAATNFHRQSRFLCHVAKEDGSLTLASLDLGNKPR 60
Query: 61 PTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPL 120
K K+ K + E+ + KV+AV++D +K KK EI S F+A SF ELGLP
Sbjct: 61 KFGKGKAMKLEGSFVTEMGQGKVRAVKNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDS 120
Query: 121 LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180
LL+ LEREGF+VPT+VQSAA+P+I+K HD VIQSYTGSGKTLAYLLPILS++GPL +KS
Sbjct: 121 LLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSR 180
Query: 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR 240
+ + E+ K+T+I+A+IVAPSRELGMQIVRE++KLLGP ++ VQQLVGGANR RQEE L+
Sbjct: 181 SSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEPLK 240
Query: 241 KNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300
KNKPAIVVGTPGRIAEIS GKLHTHGCRFLVLDE+DELLSFNFRE +HRI+EHVG+RSG
Sbjct: 241 KNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSG 300
Query: 301 ANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPG 360
A PK + RA RQTI+VSATVPFSVIRAA+SW H+P+LVQA V PL+++ + P
Sbjct: 301 AG---PKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAP- 356
Query: 361 NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
++ ++S ++ Q + QSLPPALKHYYC++K QHKVDTLRRCVHALDAQ+VIAFM
Sbjct: 357 --VMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQSVIAFM 414
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
N++RQLKD V+KLEARGM +AE+HGDLGKL RST LKKFKNGE++VLVTNELSARGLDVA
Sbjct: 415 NHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVA 474
Query: 481 ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE 540
ECDLVVNL+LPTD++HYAHRAGRTGRLGR+GTVV++CEE +VF+VKKM+KQL +P CE
Sbjct: 475 ECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFLYCE 534
Query: 541 FTEGRLVIGKEEEKTL 556
F +G LV+ +E++ +
Sbjct: 535 FVDGELVVTEEDKAII 550
>gi|115447485|ref|NP_001047522.1| Os02g0636300 [Oryza sativa Japonica Group]
gi|75323584|sp|Q6H874.1|RH47A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 47A
gi|49387967|dbj|BAD25075.1| DEAD/DEAH box helicase-like [Oryza sativa Japonica Group]
gi|113537053|dbj|BAF09436.1| Os02g0636300 [Oryza sativa Japonica Group]
gi|215713571|dbj|BAG94708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623309|gb|EEE57441.1| hypothetical protein OsJ_07650 [Oryza sativa Japonica Group]
Length = 573
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/561 (65%), Positives = 440/561 (78%), Gaps = 13/561 (2%)
Query: 3 ALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFEPT 62
AL S+R ++G+ LP S + + + V GPLTLASL +++ E
Sbjct: 14 ALASSRSCFVLGDHLPFRMLSLPRVVRFHQTAWHDIQTVEDKSGPLTLASLEVQNKVEYV 73
Query: 63 NKNKSN-----KPKKHSPIEIPKAKV-----KAVRSDGIKAAGVKKSLEIESAPFAANSF 112
K ++ KP + K KV K V+S K+A +KK+L+I+ + F+A SF
Sbjct: 74 KKERATRTGGIKPSSRASALNMKPKVSSFNAKPVKSALPKSAVLKKTLKIDESLFSAKSF 133
Query: 113 LELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172
ELGLPPLL++RL +EG PTEVQSAAIP I + HD VIQSYTGSGKTLAYLLPILS++
Sbjct: 134 EELGLPPLLIDRLNKEGLTAPTEVQSAAIPIISQKHDAVIQSYTGSGKTLAYLLPILSEI 193
Query: 173 GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANR 232
GPLK + + S K++ +EAVIVAPSRELGMQIVRE++K+LGP+DK+ VQQLVGGANR
Sbjct: 194 GPLKRPTEQDS--SDKRSGVEAVIVAPSRELGMQIVREVEKILGPNDKRLVQQLVGGANR 251
Query: 233 SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
SRQEEAL+KNKP IVVGTPGRI+EISAAGKLHTH CRFLVLDE+D+LLSFN+RE MHRI+
Sbjct: 252 SRQEEALKKNKPIIVVGTPGRISEISAAGKLHTHSCRFLVLDEVDQLLSFNYREDMHRIL 311
Query: 293 EHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLE 352
EHVGR+SG + R+ LA R+ERQTI+VSAT+PFSVIRAARSWGHDP+LV+A +V+PLE
Sbjct: 312 EHVGRKSGTSSRDILGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLVRAMSVVPLE 371
Query: 353 SMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALD 412
S+ P LS P + S+S SN + A SLPP+L+HYYC +K QHKVDTLRRC+HAL+
Sbjct: 372 SITVPRP-VLSQPDANSNSPSNSVNQAAVDSLPPSLEHYYCTSKAQHKVDTLRRCIHALE 430
Query: 413 AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472
AQTVIAFMNNT+ LKD VFKLEARGMKA ELHGDLGKLARST LKKFK+GE RVLVTNEL
Sbjct: 431 AQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNEL 490
Query: 473 SARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
SARGLDV ECDLV+NLDLPTDS HYAHRAGRTGRLGR+GTVV+ICEE E FVV+KM+KQL
Sbjct: 491 SARGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQL 550
Query: 533 AVPIQACEFTEGRLVIGKEEE 553
AVPI+ CEFTEG+L++ KEE+
Sbjct: 551 AVPIKPCEFTEGKLLVHKEED 571
>gi|242065864|ref|XP_002454221.1| hypothetical protein SORBIDRAFT_04g026990 [Sorghum bicolor]
gi|241934052|gb|EES07197.1| hypothetical protein SORBIDRAFT_04g026990 [Sorghum bicolor]
Length = 573
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/562 (65%), Positives = 439/562 (78%), Gaps = 16/562 (2%)
Query: 3 ALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQV---GRHHGPLTLASLGYKSEF 59
AL S+R ++G+ L S R+ H SQ+ GPLTLASL +S
Sbjct: 14 ALASSRSCFVLGDRLSFRMLSQ-PRVAGFHQTAWRGSQILEDNSRGGPLTLASLEVQSRV 72
Query: 60 EPTNKNKSNK---PK---KHSPIEI-PK--AKVKAVRSDGIKAAGVKKSLEIESAPFAAN 110
K K + PK + S + + PK + VK +S +K+AG+KK+L+++ A F+A
Sbjct: 73 GYGKKEKVARTAVPKPSSRASSLNVKPKVSSNVKPAKSALMKSAGIKKTLKVDEAMFSAK 132
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGLPPLL+++L +EG PTEVQSAAIP I + HDVVIQSYTGSGKTLAYLLPILS
Sbjct: 133 SFEELGLPPLLVDQLNKEGLTAPTEVQSAAIPIIAQKHDVVIQSYTGSGKTLAYLLPILS 192
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++GPLK N E K++ +EAVIVAPSRELGMQIVRE++K+LGPSDK+ VQQLVGGA
Sbjct: 193 EIGPLKRTMEQDNSE--KRSGVEAVIVAPSRELGMQIVREVEKILGPSDKRLVQQLVGGA 250
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
NRSRQEEAL+KNKP IVVGTPGRI+EISAAGKLHTHGCRFLVLDE+D+LLSFN+RE MHR
Sbjct: 251 NRSRQEEALKKNKPLIVVGTPGRISEISAAGKLHTHGCRFLVLDEVDQLLSFNYREDMHR 310
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+EHVGRRSGA R+ LA R+ERQTI+VSAT+PFSVIRAARSWGHDP+L++AK+V+P
Sbjct: 311 ILEHVGRRSGATSRDVLGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLIRAKSVVP 370
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L+S+ P LS + S+S S + A SLPP+L+HYYC K QHKVDTLRRC+HA
Sbjct: 371 LDSVTVPRPA-LSQSDANSTSPSQSVNQAAVGSLPPSLEHYYCTAKAQHKVDTLRRCIHA 429
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
L+AQTVIAFMNNT+ LKD VFKLEARG+KA ELHGDLGKLARST LKKFK+GE RVLVTN
Sbjct: 430 LEAQTVIAFMNNTKPLKDVVFKLEARGIKATELHGDLGKLARSTVLKKFKDGEFRVLVTN 489
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
ELSARGLDV ECDLVVNLDLPTDS HYAHRAGRTGRLGR+G VV+ICEE E FVV+KM+K
Sbjct: 490 ELSARGLDVPECDLVVNLDLPTDSTHYAHRAGRTGRLGRKGIVVTICEENEGFVVRKMRK 549
Query: 531 QLAVPIQACEFTEGRLVIGKEE 552
QLAV I+ CEFTEG LV+ KE+
Sbjct: 550 QLAVAIKPCEFTEGELVVHKED 571
>gi|115451605|ref|NP_001049403.1| Os03g0219700 [Oryza sativa Japonica Group]
gi|122247355|sp|Q10PV9.1|RH47B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 47B
gi|108706885|gb|ABF94680.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113547874|dbj|BAF11317.1| Os03g0219700 [Oryza sativa Japonica Group]
gi|125542928|gb|EAY89067.1| hypothetical protein OsI_10553 [Oryza sativa Indica Group]
gi|125585426|gb|EAZ26090.1| hypothetical protein OsJ_09947 [Oryza sativa Japonica Group]
gi|215701156|dbj|BAG92580.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 573
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/561 (64%), Positives = 439/561 (78%), Gaps = 13/561 (2%)
Query: 3 ALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFEPT 62
AL S+R ++G++LPL S + + V LTLASL +++ E
Sbjct: 14 ALASSRSCFVLGDNLPLRMLSLPRAVRFHQTAWLGTETVQDKSASLTLASLEGQNKVEYG 73
Query: 63 NKNKSNK---PKKHSPIEIPKAKVKA-------VRSDGIKAAGVKKSLEIESAPFAANSF 112
K K+ + PK S K K K +S K+A VKK+L+I+ + F+A SF
Sbjct: 74 KKEKATRIGGPKPSSRASALKVKPKVSSFNSKPAKSTLPKSAVVKKTLKIDESLFSAKSF 133
Query: 113 LELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172
ELGLPPLL++RL +EG + PTEVQSAAIP I + HD VIQSYTGSGKTLAYLLPILS++
Sbjct: 134 EELGLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYTGSGKTLAYLLPILSEI 193
Query: 173 GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANR 232
GPLK + + +G S K++ +EAVIVAPSRELGMQIVRE++K+LGP+DK+ VQQLVGGANR
Sbjct: 194 GPLK-RPTEQDG-SDKRSGVEAVIVAPSRELGMQIVREVEKILGPNDKRLVQQLVGGANR 251
Query: 233 SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
SRQEEAL+KNKP IVVGTPGRI+EISA GKLHTHGCRFLVLDE+D+LLSFN+RE MHRI+
Sbjct: 252 SRQEEALKKNKPLIVVGTPGRISEISAGGKLHTHGCRFLVLDEVDQLLSFNYREDMHRIL 311
Query: 293 EHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLE 352
EHVGR+SG + R+ LA R+ERQTI+VSAT+PFSVIRAARSWGHDP+LV+A +V+PL+
Sbjct: 312 EHVGRKSGTSSRDILGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLVRAMSVVPLD 371
Query: 353 SMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALD 412
S+ P LS + +S SN + A SLPP+L+HYYC++K QHKVDTLRRC+HAL+
Sbjct: 372 SITVPRP-VLSQTDANPNSPSNSVNQAAVNSLPPSLEHYYCISKAQHKVDTLRRCIHALE 430
Query: 413 AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472
AQTVIAFMNNT+ LKD VFKLEARGMKA ELHGDLGKLARST LKKFK+GE RVLVTNEL
Sbjct: 431 AQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNEL 490
Query: 473 SARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
SARGLDV ECDLV+NLDLPTDS HYAHRAGRTGRLGR+GTVV+ICEE E FVV+KM+KQL
Sbjct: 491 SARGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQL 550
Query: 533 AVPIQACEFTEGRLVIGKEEE 553
AVPI+ CEFTEG+L++ EE+
Sbjct: 551 AVPIKPCEFTEGKLLVHNEED 571
>gi|195611596|gb|ACG27628.1| EMB1586 [Zea mays]
gi|223946723|gb|ACN27445.1| unknown [Zea mays]
Length = 573
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/562 (65%), Positives = 436/562 (77%), Gaps = 15/562 (2%)
Query: 3 ALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQV--GRHHGPLTLASLGYKSEFE 60
AL S+R ++G+ + S R+ H SQ+ GPLTLASL +S E
Sbjct: 14 ALASSRSCFVLGDRVSFRMLSQ-PRVAGFHQTAWRGSQILEDNRGGPLTLASLEVQSRVE 72
Query: 61 PTNKNKSNK---PK---KHSPIEI-PK--AKVKAVRSDGIKAAGVKKSLEIESAPFAANS 111
K K + PK + S + + PK + VK +S +K AG+KK+L+++ A F+A S
Sbjct: 73 YGKKGKMERTGGPKPSSRASSLYVKPKVSSNVKPAKSALMKPAGIKKTLKVDEALFSAKS 132
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELGLPPLL+++L +EG PTEVQSAAIP I + HDVVIQSYTGSGKTLAYLLPILS
Sbjct: 133 FEELGLPPLLVDQLNKEGLTAPTEVQSAAIPIIAQKHDVVIQSYTGSGKTLAYLLPILSD 192
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+GPLK + E K++ IEAVIVAPSRELGMQIVRE++K+LGP+DK+ VQQLVGGAN
Sbjct: 193 IGPLKRTMEQDHSE--KRSGIEAVIVAPSRELGMQIVREVEKILGPNDKRLVQQLVGGAN 250
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RSRQEEAL+KNKP IVVGTPGRI+EISAAGKLHTHGCRFLVLDE+D+LLSFN+RE MHRI
Sbjct: 251 RSRQEEALKKNKPIIVVGTPGRISEISAAGKLHTHGCRFLVLDEVDQLLSFNYREDMHRI 310
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+EHVGRR G R+ LA R+ERQTI+VSAT+PFSVIRAARSWGHDP+L++AK+V+PL
Sbjct: 311 LEHVGRRPGGTSRDILGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLIRAKSVVPL 370
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+S+ P LS + SS+S + A SLPP+L+HYYC K QHKVDTLRRC+HAL
Sbjct: 371 DSITVPRPA-LSQSDANPSSSSQSVNQAAVGSLPPSLEHYYCTAKAQHKVDTLRRCIHAL 429
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+AQTVIAFMNNT+ LKD VFKLEARG+KA ELHGDLGKLARST LKKFK+GE RVLVTNE
Sbjct: 430 EAQTVIAFMNNTKPLKDVVFKLEARGIKATELHGDLGKLARSTVLKKFKDGEFRVLVTNE 489
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
LSARGLDV ECDLVVNLDLPTDS HYAHRAGRTGRLGR+G VV+ICEE E FVV+KM+KQ
Sbjct: 490 LSARGLDVPECDLVVNLDLPTDSTHYAHRAGRTGRLGRKGIVVTICEESEGFVVRKMRKQ 549
Query: 532 LAVPIQACEFTEGRLVIGKEEE 553
L V I+ CEFTEG LV+ KEE+
Sbjct: 550 LDVAIKPCEFTEGELVVHKEED 571
>gi|357136707|ref|XP_003569945.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 47A-like
[Brachypodium distachyon]
Length = 575
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/570 (64%), Positives = 437/570 (76%), Gaps = 29/570 (5%)
Query: 3 ALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHG-PLTLASLGYKSE--- 58
AL S+R ++G+ LP S + R H SQ+ G PLTLASL +S+
Sbjct: 14 ALASSRSCFVMGDHLPFRMMS-LPRAAGFHQTAWRGSQIIEDKGSPLTLASLEVQSKADY 72
Query: 59 -----------FEPTNKNKS--NKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESA 105
+P++++ + KPKK S + + AK S K V+K L+I+ A
Sbjct: 73 VKKKRVPRTGGLKPSSRDSALNVKPKKVSSLSLKPAK-----SALPKVPVVRKKLKIDEA 127
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
F+A SF E LPPLL++RL +EG PTEVQSAAIP+I + HDVVIQSYTGSGKTLAY+
Sbjct: 128 LFSAKSFEEHDLPPLLIDRLNKEGLTSPTEVQSAAIPTISQKHDVVIQSYTGSGKTLAYI 187
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
LPILS++GPLK GN S K++ IEAVIVAPSRELGMQIVRE++K+LGP DK+ VQQ
Sbjct: 188 LPILSEIGPLKRAREQGN--SDKRSGIEAVIVAPSRELGMQIVREVEKILGPDDKRLVQQ 245
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
LVGGANRSRQEEAL+KNKP IVVGTPGRIAEISAAGKL TH CRFLVLDE+D+LLSFN+R
Sbjct: 246 LVGGANRSRQEEALKKNKPIIVVGTPGRIAEISAAGKLQTHNCRFLVLDEVDQLLSFNYR 305
Query: 286 EAMHRIVEHVGRRSGANPREP-KSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
E MHRI+EHVGR+SG + LA R++RQTI+VSAT+PFSVIRAARSWGHDP+LV+
Sbjct: 306 EDMHRILEHVGRKSGTSSSSGILGPLARRSDRQTILVSATIPFSVIRAARSWGHDPVLVR 365
Query: 345 AKNVIPLESMPATGPGNLSG-PMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT 403
AK+V+PL+S+ A P G P S S S S QA A SLPP+L+HYYC +K QHKVDT
Sbjct: 366 AKSVVPLDSIAAPRPVLSQGEPNSDSPSMSVNQA--AVDSLPPSLEHYYCTSKAQHKVDT 423
Query: 404 LRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE 463
LRRC++AL+AQTVIAFMNN++ LKD VFKLEARGMKA ELHGDLGKLARST LKKFK+GE
Sbjct: 424 LRRCIYALEAQTVIAFMNNSKPLKDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGE 483
Query: 464 VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF 523
RVLVTNELSARGLDV ECDLVVNLDLPTDS HYAHRAGRTGRLGR+GTVVSICEE E F
Sbjct: 484 FRVLVTNELSARGLDVPECDLVVNLDLPTDSTHYAHRAGRTGRLGRKGTVVSICEESEAF 543
Query: 524 VVKKMQKQLAVPIQACEFTEGRLVIGKEEE 553
+++KM+KQLAVPI+ CEFTEG++ + KEE+
Sbjct: 544 IMRKMRKQLAVPIKPCEFTEGQINVHKEED 573
>gi|326517806|dbj|BAK03821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 601
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/594 (60%), Positives = 431/594 (72%), Gaps = 51/594 (8%)
Query: 3 ALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGP-LTLASLGYKSEFEP 61
AL S+R ++G+ LP S + R H SQ G LTLASL +S+ +
Sbjct: 14 ALASSRSCFVIGDHLPFRMLS-LPRASGFHQTAWRGSQTVEDSGSTLTLASLEVQSKADY 72
Query: 62 TNK-----NKSNKPKKHSPIEIPKAKVKAVRSDGIKAAG--------------------- 95
K +K++ KK +P++K V+ + + G
Sbjct: 73 VKKERVPQSKADYVKKE---RVPQSKTDYVKKERVPRTGGPKPSSRDSAFSAKPKKVSSL 129
Query: 96 --------------VKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAI 141
VKK L+I+ A F+A+SF ELGLPPLL++RL +EG PTEVQSA+I
Sbjct: 130 HLKPAKSALPKSPVVKKKLKIDEALFSASSFEELGLPPLLIDRLNKEGLTSPTEVQSASI 189
Query: 142 PSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSR 201
P I + HD VIQSYTGSGKTLAYLLPILS++GPLK GN E K++ IEAV+VAPSR
Sbjct: 190 PVISQRHDAVIQSYTGSGKTLAYLLPILSEIGPLKRAREQGNSE--KRSGIEAVVVAPSR 247
Query: 202 ELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG 261
ELGMQIVRE++K+LGP DK+ VQQLVGGANRSRQEEAL+KNKP IVVGTPGRI+EISAAG
Sbjct: 248 ELGMQIVREVEKILGPDDKRLVQQLVGGANRSRQEEALKKNKPIIVVGTPGRISEISAAG 307
Query: 262 KLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR-SGANPREPKSALAMRAERQTIM 320
KL TH CRFLVLDE+D+LLSFN+RE MHRI+EHVGR+ S ++ LA R+ERQTI+
Sbjct: 308 KLQTHNCRFLVLDEVDQLLSFNYREDMHRILEHVGRKPSTSSSSHILGPLARRSERQTIL 367
Query: 321 VSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSG-PMSGSSSNSNLQAKQ 379
VSATVPFSVIRAARSWGHDP+LV+AK+V+PL+S+ P G P S S + S QA
Sbjct: 368 VSATVPFSVIRAARSWGHDPVLVRAKSVVPLDSITVPRPMLSQGDPNSDSPTMSVNQA-- 425
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
A SLPP+L+HYYC TK HKVDTLRRC+HAL+A+TVIAFMNNT+ LKD VFKLEARGMK
Sbjct: 426 AVDSLPPSLEHYYCTTKAHHKVDTLRRCIHALEAETVIAFMNNTKPLKDVVFKLEARGMK 485
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
A ELHGDLGKLARST LKKFK GE RVLVTNELSARGLD+ ECDLV+NLDLPTDS HYAH
Sbjct: 486 AIELHGDLGKLARSTVLKKFKAGEFRVLVTNELSARGLDIPECDLVINLDLPTDSTHYAH 545
Query: 500 RAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEE 553
RAGRTGRLGR+GTVVSICEE E F+++KM+KQL V I+ CEFTEG++ + KEE+
Sbjct: 546 RAGRTGRLGRKGTVVSICEESEAFIMRKMRKQLGVAIKPCEFTEGQITVHKEED 599
>gi|413937931|gb|AFW72482.1| putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 591
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/562 (62%), Positives = 423/562 (75%), Gaps = 28/562 (4%)
Query: 3 ALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQV--GRHHGPLTLASLGYKSEFE 60
AL S+R ++G+ + S R+ H SQ+ GPLTLASL +S E
Sbjct: 45 ALASSRSCFVLGDRVSFRMLS-QPRVAGFHQTAWRGSQILEDNRGGPLTLASLEVQSRVE 103
Query: 61 PTNKNKSNK---PK---KHSPIEI-PK--AKVKAVRSDGIKAAGVKKSLEIESAPFAANS 111
K K + PK + S + + PK + VK +S +K AG+KK+L+++ A F+A S
Sbjct: 104 YGKKGKMERTGGPKPSSRASSLYVKPKVSSNVKPAKSALMKPAGIKKTLKVDEALFSAKS 163
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELGLPPLL+++L +EG PTEVQSAAIP I + HDVVIQSYTGSGKTLAYLLPILS
Sbjct: 164 FEELGLPPLLVDQLNKEGLTAPTEVQSAAIPIIAQKHDVVIQSYTGSGKTLAYLLPILSD 223
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+GPLK + E K++ IEAVIVAPSRELGMQIVRE++K+LGP+DK+ VQQLVGGAN
Sbjct: 224 IGPLKRTMEQDHSE--KRSGIEAVIVAPSRELGMQIVREVEKILGPNDKRLVQQLVGGAN 281
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RSRQEEAL+KNKP IVVGTPGRI+EISAA DE+D+LLSFN+RE MHRI
Sbjct: 282 RSRQEEALKKNKPIIVVGTPGRISEISAA-------------DEVDQLLSFNYREDMHRI 328
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+EHVGRR G R+ LA R+ERQTI+VSAT+PFSVIRAARSWGHDP+L++AK+V+PL
Sbjct: 329 LEHVGRRPGGTSRDILGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLIRAKSVVPL 388
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+S+ P LS + SS+S + A SLPP+L+HYYC K QHKVDTLRRC+HAL
Sbjct: 389 DSITVPRPA-LSQSDANPSSSSQSVNQAAVGSLPPSLEHYYCTAKAQHKVDTLRRCIHAL 447
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+AQTVIAFMNNT+ LKD VFKLEARG+KA ELHGDLGKLARST LKKFK+GE RVLVTNE
Sbjct: 448 EAQTVIAFMNNTKPLKDVVFKLEARGIKATELHGDLGKLARSTVLKKFKDGEFRVLVTNE 507
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
LSARGLDV ECDLVVNLDLPTDS HYAHRAGRTGRLGR+G VV+ICEE E FVV+KM+KQ
Sbjct: 508 LSARGLDVPECDLVVNLDLPTDSTHYAHRAGRTGRLGRKGIVVTICEESEGFVVRKMRKQ 567
Query: 532 LAVPIQACEFTEGRLVIGKEEE 553
L V I+ CEFTEG LV+ KEE+
Sbjct: 568 LDVAIKPCEFTEGELVVHKEED 589
>gi|125540426|gb|EAY86821.1| hypothetical protein OsI_08201 [Oryza sativa Indica Group]
Length = 787
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 330/561 (58%), Positives = 403/561 (71%), Gaps = 57/561 (10%)
Query: 3 ALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFEPT 62
AL S+R ++G+ LP S + + + V GPLTLAS+ +++ E
Sbjct: 272 ALASSRSCFVLGDHLPFRMLSLPRVVRFHQTAWHDIQTVEDKSGPLTLASVEVQNKVEYV 331
Query: 63 NKNKSN-----KPKKHSPIEIPKAKV-----KAVRSDGIKAAGVKKSLEIESAPFAANSF 112
K ++ KP + K KV K V+S K+A +KK+L+I+ + F+A SF
Sbjct: 332 KKERATRTGGTKPSSRASALNMKPKVSSFNAKPVKSALPKSAVLKKTLKIDESLFSAKSF 391
Query: 113 LELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172
ELGLPPLL++RL +E
Sbjct: 392 EELGLPPLLIDRLNKE-------------------------------------------- 407
Query: 173 GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANR 232
GPLK + + S K++ +EAVIVAPSRELGMQIVRE++K+LGP+DK+ VQQL+GGANR
Sbjct: 408 GPLKRPTEQDS--SDKRSGVEAVIVAPSRELGMQIVREVEKILGPNDKRLVQQLLGGANR 465
Query: 233 SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
SRQEEAL+KNKP IVVGTPGRI+EISAAGKLHTH CRFLVLDE+D+LLSFN+RE MHRI+
Sbjct: 466 SRQEEALKKNKPIIVVGTPGRISEISAAGKLHTHSCRFLVLDEVDQLLSFNYREDMHRIL 525
Query: 293 EHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLE 352
EHVGR+SG + R+ LA R+ERQTI+VSAT+PFSVIRAARSWGHDP+LV+A +V+PLE
Sbjct: 526 EHVGRKSGTSSRDILGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLVRAMSVVPLE 585
Query: 353 SMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALD 412
S+ P LS P + S+S SN + A SLPP+L+HYYC +K QHKVDTLRRC+HAL+
Sbjct: 586 SITVPRP-VLSQPDANSNSPSNSVNQAAVDSLPPSLEHYYCTSKAQHKVDTLRRCIHALE 644
Query: 413 AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472
AQTVIAFMNNT+ LKD VFKLEARGMKA ELHGDLGKLARST LKKFK+GE RVLVTNEL
Sbjct: 645 AQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNEL 704
Query: 473 SARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
SARGLDV ECDLV+NLDLPTDS HYAHRAGRTGRLGR+GTVV+ICEE E FVV+KM+KQL
Sbjct: 705 SARGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQL 764
Query: 533 AVPIQACEFTEGRLVIGKEEE 553
AVPI+ CEFTEG+L++ KEE+
Sbjct: 765 AVPIKPCEFTEGKLLVHKEED 785
>gi|168010592|ref|XP_001757988.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690865|gb|EDQ77230.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 258/456 (56%), Positives = 334/456 (73%), Gaps = 11/456 (2%)
Query: 100 LEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQS-AAIPSILKNHDVVIQSYTGS 158
++I S PFA F L L +L+RL++E +PT+VQ AAIP+IL HD +QSYTGS
Sbjct: 11 VDIRSFPFAEKEFSALNLSRRVLQRLKQERVELPTDVQQVAAIPTILDGHDAALQSYTGS 70
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNG---ESGKKTDIEAVIVAPSRELGMQIVREIKKLL 215
GKTLAYLLPILS+VGPL++ S G E+ + IEAVIV PSREL MQIVRE +++L
Sbjct: 71 GKTLAYLLPILSRVGPLRELSEGGKAITDETINRGGIEAVIVVPSRELAMQIVREAERIL 130
Query: 216 GPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDE 275
G KK VQQL+GGAN+SRQEEAL+KNKP IVVGTPGRI+EIS AGKLHTHGCRFLVLDE
Sbjct: 131 GSEYKKVVQQLIGGANQSRQEEALKKNKPCIVVGTPGRISEISKAGKLHTHGCRFLVLDE 190
Query: 276 IDELLSFNFREAMHRIVEHVGRRSGANPREPKS----ALAMRAERQTIMVSATVPFSVIR 331
D+LLS FR M RI+EHVG+R + P S +++ R ERQT++VSAT+P +V+R
Sbjct: 191 ADQLLSIKFRSDMRRILEHVGQRRSVSTAMPNSFETPSVSERVERQTLLVSATMPQAVLR 250
Query: 332 AARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHY 391
AA WGH PLLV+A+++I +E P ++ S+ + +LQ A +SLPP L+H+
Sbjct: 251 AAAVWGHRPLLVRAQSIIRVEDFRVE-PSSIDSETKESTVSPDLQG--AKESLPPNLEHF 307
Query: 392 YCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
Y V L+H VD LR+ +HAL+A++VI F+N++R+LKD FKLEARG+ A LHG+L K+
Sbjct: 308 YVVASLRHHVDILRKSIHALEARSVIVFLNHSRRLKDVQFKLEARGLTAGALHGELSKME 367
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG 511
RS L F+NG++RVLVT+E+ ARGLD+ CDLVVNL+LPTD HYAHR GRTGRLGR+G
Sbjct: 368 RSNILNSFRNGKLRVLVTSEVGARGLDIPTCDLVVNLELPTDGSHYAHRGGRTGRLGRKG 427
Query: 512 TVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLV 547
TV+S+CE E FV+ K ++QL + I E G++V
Sbjct: 428 TVISVCEAREEFVLSKFERQLDISITRQEIVNGQIV 463
>gi|302810783|ref|XP_002987082.1| hypothetical protein SELMODRAFT_43111 [Selaginella moellendorffii]
gi|300145247|gb|EFJ11925.1| hypothetical protein SELMODRAFT_43111 [Selaginella moellendorffii]
Length = 462
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 246/451 (54%), Positives = 319/451 (70%), Gaps = 10/451 (2%)
Query: 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAY 164
+PF+A F L L P L+++L+ PT+VQ++AIP +L HD +QSYTGSGKTLAY
Sbjct: 20 SPFSAQGFASLKLSPKLVQKLDEMNLTSPTQVQASAIPVLLDGHDAAMQSYTGSGKTLAY 79
Query: 165 LLPILSKVGPLKDKSSNGNGESGKKTD-IEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
LLPILS +GP D G ES +KT I+AVIVAPSREL MQIVRE +KLLG ++ V
Sbjct: 80 LLPILSTIGPFADA---GGDESARKTGAIDAVIVAPSRELAMQIVREAEKLLGDEHRRLV 136
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283
QQL+GGAN RQ EAL+KNKP I+VGTPGRI+E S AGKLHTHGCRFLV DE D++LS
Sbjct: 137 QQLIGGANLKRQAEALKKNKPMIIVGTPGRISEFSRAGKLHTHGCRFLVFDEADQVLSMK 196
Query: 284 FREAMHRIVEHVG-RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
+R+ M RI+EHVG RR+ ++ ++ R ERQTI+VSAT+P ++++AA WGH PLL
Sbjct: 197 YRDDMKRILEHVGTRRASSSSSSSSNSQPQRLERQTILVSATMPPALLKAAEDWGHKPLL 256
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V+A + S S+ + A +SLPP L+H Y ++ +H+V
Sbjct: 257 VKAAAATSTSQSSSEVDSQQQKRWS-----SDPDVRGARESLPPNLRHCYVISPARHRVS 311
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
TLRRC++ALD Q+V+ FMN +R+LKD +FKL+A G+ + LHGD GKL RS TL FK G
Sbjct: 312 TLRRCINALDPQSVLVFMNFSRRLKDTMFKLQAGGIDVSCLHGDKGKLGRSNTLTAFKAG 371
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
++RVLV +E+ ARG+DV ECDLVVNL+LPTD+ HYAHRAGRTGRLGR GTV++ICEE E
Sbjct: 372 KIRVLVVSEVGARGIDVPECDLVVNLELPTDATHYAHRAGRTGRLGRGGTVLTICEEREK 431
Query: 523 FVVKKMQKQLAVPIQACEFTEGRLVIGKEEE 553
FVV K +KQL + I CE G + + +E++
Sbjct: 432 FVVDKFEKQLGLQIDKCEVACGDVSLEEEDQ 462
>gi|147742775|gb|ABQ50555.1| hypothetical protein [Brassica rapa]
Length = 276
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/282 (71%), Positives = 239/282 (84%), Gaps = 6/282 (2%)
Query: 263 LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVS 322
LHTHGCRFLVLDE+DELLSFNFRE +HRI+EHVGRR+GA P K + RA RQTI+VS
Sbjct: 1 LHTHGCRFLVLDEVDELLSFNFREDIHRIIEHVGRRAGAGP---KGEVDERANRQTILVS 57
Query: 323 ATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ 382
ATVPFSVIRAA+SW H+P+LVQA V PL+S+ T P P ++S +N Q + Q
Sbjct: 58 ATVPFSVIRAAKSWSHEPVLVQANKVTPLDSVQTTAPAISLTP---TTSEANGQIQTTIQ 114
Query: 383 SLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAE 442
SLPPALKH+YC++K QHKVD LRRCVHALDAQ+VIAFMN+++QLKD V+KLEARGM +E
Sbjct: 115 SLPPALKHFYCISKHQHKVDALRRCVHALDAQSVIAFMNHSKQLKDVVYKLEARGMSCSE 174
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAG 502
LHGDLGKL RST LKKFKNGEVRVLVTNELSARGLDVAECDLVVNL+LPTD++HYAHRAG
Sbjct: 175 LHGDLGKLGRSTVLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAG 234
Query: 503 RTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544
RTGRLGR+GTVV++CEE +VF+VKKM+KQL +P + CEF +G
Sbjct: 235 RTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFEYCEFVDG 276
>gi|302807590|ref|XP_002985489.1| hypothetical protein SELMODRAFT_23881 [Selaginella moellendorffii]
gi|300146695|gb|EFJ13363.1| hypothetical protein SELMODRAFT_23881 [Selaginella moellendorffii]
Length = 378
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/430 (54%), Positives = 292/430 (67%), Gaps = 54/430 (12%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F L L P L+++L+ PT+VQ++AIP +L HD +QSYTGSGKTLAYLLPILS
Sbjct: 1 FASLKLSPKLVQKLDEMNLKSPTQVQASAIPVLLDGHDAAMQSYTGSGKTLAYLLPILST 60
Query: 172 VGPLKDKSSNGNGESGKKTD-IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+GP D G ES +KT I+AVIVAPSREL MQIVRE +KLLG ++ VQQL+GGA
Sbjct: 61 IGPFADA---GGDESARKTGAIDAVIVAPSRELAMQIVREAEKLLGDEHRRLVQQLIGGA 117
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N RQ EAL+KNKP I+VGTPGRI+E S AGKLHTHGCRFLV DE D++LS +R+ M R
Sbjct: 118 NLKRQAEALKKNKPMIIVGTPGRISEFSRAGKLHTHGCRFLVFDEADQVLSMKYRDDMKR 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+EH R ERQTI+VSAT+P ++++AA WGH PLLV+A
Sbjct: 178 ILEH----------------PQRLERQTILVSATMPPALLKAAEDWGHKPLLVKA----- 216
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
A +LPP L+H Y ++ +H+V TLRRC++A
Sbjct: 217 -----------------------------AAATLPPNLRHCYVISPARHRVSTLRRCINA 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
LD Q+V+ FMN +R+LKD +FKL+A G+ + LHGD GKL RS TL FK G++RVLV +
Sbjct: 248 LDPQSVLVFMNFSRRLKDTMFKLQAGGIDVSCLHGDKGKLGRSNTLTAFKAGKIRVLVVS 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
E+ ARG+DV ECDLVVNL+LPTD+ HYAHRAGRTGRLGR GTV++ICEE E FVV K +K
Sbjct: 308 EVGARGIDVPECDLVVNLELPTDATHYAHRAGRTGRLGRGGTVLTICEEREKFVVDKFEK 367
Query: 531 QLAVPIQACE 540
QL + I CE
Sbjct: 368 QLGLQIDQCE 377
>gi|212274587|ref|NP_001130352.1| uncharacterized protein LOC100191447 [Zea mays]
gi|194688914|gb|ACF78541.1| unknown [Zea mays]
Length = 396
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/363 (60%), Positives = 273/363 (75%), Gaps = 14/363 (3%)
Query: 3 ALVSTRLLLLVGESLPLHKFSCVSRMPWCHNGVRFLSQV--GRHHGPLTLASLGYKSEFE 60
AL S+R ++G+ + S R+ H SQ+ GPLTLASL +S E
Sbjct: 14 ALASSRSCFVLGDRVSFRMLSQ-PRVAGFHQTAWRGSQILEDNRGGPLTLASLEVQSRVE 72
Query: 61 PTNKNKSNK---PK---KHSPIEI-PK--AKVKAVRSDGIKAAGVKKSLEIESAPFAANS 111
K K + PK + S + + PK + VK +S +K AG+KK+L+++ A F+A S
Sbjct: 73 YGKKGKMERTGGPKPSSRASSLYVKPKVSSNVKPAKSALMKPAGIKKTLKVDEALFSAKS 132
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELGLPPLL+++L +EG PTEVQSAAIP I + HDVVIQSYTGSGKTLAYLLPILS
Sbjct: 133 FEELGLPPLLVDQLNKEGLTAPTEVQSAAIPIIAQKHDVVIQSYTGSGKTLAYLLPILSD 192
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+GPLK + E K++ IEAVIVAPSRELGMQIVRE++K+LGP+DK+ VQQLVGGAN
Sbjct: 193 IGPLKRTMEQDHSE--KRSGIEAVIVAPSRELGMQIVREVEKILGPNDKRLVQQLVGGAN 250
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RSRQEEAL+KNKP IVVGTPGRI+EISAAGKLHTHGCRFLVLDE+D+LLSFN+RE MHRI
Sbjct: 251 RSRQEEALKKNKPIIVVGTPGRISEISAAGKLHTHGCRFLVLDEVDQLLSFNYREDMHRI 310
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+EHVGRR G R+ LA R+ERQTI+VSAT+PFSVIRAARSWGHDP+L++AK+V+PL
Sbjct: 311 LEHVGRRPGGTSRDILGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLIRAKSVVPL 370
Query: 352 ESM 354
+S+
Sbjct: 371 DSI 373
>gi|255071887|ref|XP_002499618.1| predicted protein [Micromonas sp. RCC299]
gi|226514880|gb|ACO60876.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 407
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/438 (42%), Positives = 264/438 (60%), Gaps = 33/438 (7%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL L L+ GF P+ Q A IP +L+ DV +QSYTGSGKTLAYLLP+L+
Sbjct: 2 SFADLGLCRTLCAALDATGFKHPSPPQLATIPMLLEGTDVAMQSYTGSGKTLAYLLPVLN 61
Query: 171 KVGPLKDKSSNGNGESGKKTD-IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ + K G++ D ++ ++V PS+EL MQIVR+++++LG ++ QQ +GG
Sbjct: 62 RIAEDQRKPR------GERADGVQCLVVVPSQELAMQIVRQVERVLGEFGREITQQCIGG 115
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
AN RQEEALR+ +P +VVGTPGR+AE+S +G L THG + LV+DE D+LL+ NFR M
Sbjct: 116 ANIRRQEEALRRKRPLVVVGTPGRVAELSRSGILRTHGVKCLVIDEADDLLASNFRRDMA 175
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RIV+H G+ + RQT++VSAT+ + D A N++
Sbjct: 176 RIVDHTGK-------------GVLGGRQTVIVSATLKRETL--------DQYSYMAPNLV 214
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+++ S++ A SLPP L+HY V + +HKVD LRR +H
Sbjct: 215 HVKATKKELEKAKEAEGGEEGETSDVAA-----SLPPNLEHYSVVAEGRHKVDRLRRAIH 269
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A A+ + F+N +L D KL ARGM LHG + KL R+ L F+ G+ R L+
Sbjct: 270 ATGAERALVFLNFGHRLTDTRDKLAARGMPCGVLHGGMNKLERANELAAFRRGDFRALLV 329
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++L+ARG+DV E D V NLDLPTD HY HRAGRTGR+G G V+++ E FV+ K+Q
Sbjct: 330 SDLAARGIDVPEVDAVFNLDLPTDETHYVHRAGRTGRMGADGMVMTLAAPDEAFVLTKIQ 389
Query: 530 KQLAVPIQACEFTEGRLV 547
++L + I+A + +GR+V
Sbjct: 390 RKLGIDIKAADLQKGRVV 407
>gi|384248427|gb|EIE21911.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 443
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 188/440 (42%), Positives = 258/440 (58%), Gaps = 62/440 (14%)
Query: 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK---------TLAYLLPILSKVGPLKDKS 179
G + PT+VQ A+IP +LK +V IQ YTGSGK TLAYLLP+LS L+
Sbjct: 2 GISEPTQVQDASIPKVLKGGNVAIQCYTGSGKASSSHFYHHTLAYLLPVLSLA--LQRAE 59
Query: 180 SNGNGESGKKT-----DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR 234
S +K ++AV+V PSREL MQI R + LL P + VQQ +GGAN +R
Sbjct: 60 QEFEALSSRKKAALAGSLQAVVVVPSRELAMQIARVGQALLPPQARGCVQQAIGGANINR 119
Query: 235 QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEH 294
Q EA+++NKP +VVGTPGR+AE+S +G L TH LVLDE+D+LL+ FRE M R+ EH
Sbjct: 120 QMEAIKQNKPLMVVGTPGRLAELSRSGALQTHPAGILVLDEVDQLLAVQFREDMTRLTEH 179
Query: 295 VGRRSGANPREPKSALAMRAERQTIMVSATVP----FSVIRAAR--------------SW 336
VGR+ A RQTI+VSAT+ FS ++AA+ W
Sbjct: 180 VGRKCPAG-------------RQTILVSATLTQNAVFSSVQAAQPSQPKQQSASPSAPQW 226
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
G D L A + + PAT SS + A +PP L+H + +
Sbjct: 227 GWDDLKFSAGDTL----NPAT-----------RSSAGGVGTADAMPLMPPKLEHGWLLVD 271
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
+H+VD +RR +HAL++ + FMN ++L D +KLE M L GD+GK R+ L
Sbjct: 272 RRHRVDAVRRVIHALNSHRALVFMNFQQRLNDTKYKLEVHKMAVGTLSGDMGKTERANML 331
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
++F G+ R L+ ++++ARGLD+ +CD V+NL+LP+D+ HYAHRAGRTGR GR G VVS+
Sbjct: 332 RRFARGDFRALIVSDVAARGLDLPDCDAVINLELPSDAAHYAHRAGRTGRAGRDGVVVSL 391
Query: 517 CEEPEVFVVKKMQKQLAVPI 536
E E FV+KK+ ++L VPI
Sbjct: 392 AEPSETFVMKKLARRLGVPI 411
>gi|308806037|ref|XP_003080330.1| DEAD/DEAH box helicase family protein / pentatricopeptide (ISS)
[Ostreococcus tauri]
gi|116058790|emb|CAL54497.1| DEAD/DEAH box helicase family protein / pentatricopeptide (ISS)
[Ostreococcus tauri]
Length = 518
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 186/453 (41%), Positives = 259/453 (57%), Gaps = 40/453 (8%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LG+ L L R G P+ Q +A+P+I + +V IQS+TGSGKTLAYLLP++
Sbjct: 56 TFEDLGVGAKLRRALSRAGVETPSVAQRSAMPAISRGENVAIQSHTGSGKTLAYLLPVIC 115
Query: 171 KVGPLKDKSSNGNG--ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
D G G + + + VIVAPS+EL MQIVR+++K+LG ++ QQ +G
Sbjct: 116 ------DMFDEGTGTVRADVGSGVRCVIVAPSQELAMQIVRQVEKILGDLGRQITQQAIG 169
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GAN RQEEA+RK +P IVVGTPGR+AE+S +G L THG R LV+DE D+LL+ NFR M
Sbjct: 170 GANAKRQEEAIRKKRPLIVVGTPGRLAELSRSGILQTHGVRLLVVDEADDLLASNFRRDM 229
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI EH G+ + RQT++VSAT+ + A + L +++
Sbjct: 230 ARISEHTGK-------------GVPGGRQTVIVSATLKQETLDA-----YSYLAPNLRHI 271
Query: 349 IPLESMPATGPGNLSGPMS--------------GSSSNSNLQAKQADQSLPPALKHYYCV 394
+ P + P + G +S+ + + KQ SLPP + H +
Sbjct: 272 VATYDTPVSRPLSAEGEEETKEDANIVAARDEKSASAAAQQELKQGVVSLPPHITHCSVI 331
Query: 395 TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
Q KVD LRR ++A D Q + F N R+L+D KL ARGM+ LHG + K+ R
Sbjct: 332 ADRQRKVDELRRAIYATDVQRALIFCNFGRRLQDVQAKLGARGMRVGILHGGMDKMERQK 391
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
L F+ G+ R LV ++L+ARGLDV +CD V NL+LPTD HY HRAGRTGR+G G VV
Sbjct: 392 ELAAFRRGDFRALVVSDLAARGLDVDDCDAVFNLELPTDETHYVHRAGRTGRMGAPGVVV 451
Query: 515 SICEEPEVFVVKKMQKQLAVPIQACEFTEGRLV 547
+I E E FV+++ ++ L V I G +V
Sbjct: 452 TIAEPSEAFVLRRFEQNLGVRINDVATRGGEVV 484
>gi|145349001|ref|XP_001418929.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579159|gb|ABO97222.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 416
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 182/438 (41%), Positives = 260/438 (59%), Gaps = 36/438 (8%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LG+ L LER G P+ Q AA+P+I + +V +QS+TGSGKTLAYLLP++
Sbjct: 1 TFRDLGVGARLTRALERAGVETPSIAQRAAMPAIARGENVAMQSHTGSGKTLAYLLPVIC 60
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ + D++ ++G + A++VAPS+EL MQIVR++++LLG ++ QQ +GGA
Sbjct: 61 DI--VDDETGTVRRDAGNG--VRALVVAPSQELAMQIVRQVERLLGDLGREITQQAIGGA 116
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N RQEEA+R+ +P IVVGTPGR+AE+S G L THG + LV+DE D+LL+ NFR M R
Sbjct: 117 NAKRQEEAIRRKRPLIVVGTPGRLAELSRTGILQTHGVKTLVVDEADDLLASNFRRDMAR 176
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I EH G+ A+ RQT++VSAT+ + A + L +++
Sbjct: 177 ISEHTGK-------------AVPGGRQTVIVSATLKQETLDA-----YSYLAPNLTHIVA 218
Query: 351 LESMPA----TGPGNLSGPMS----------GSSSNSNLQAKQADQSLPPALKHYYCVTK 396
P+ T PG +S+ + + Q SLPP + H +++
Sbjct: 219 TYDKPSPTALTTPGEDEEVEEADVADARDEKSASAAARQERMQGVVSLPPHITHCSVISE 278
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
+HKVD LRR +HA D Q + F N R+L++ KL AR M LHG + K+ R L
Sbjct: 279 RRHKVDELRRAIHATDVQRALIFCNFGRRLEEVQAKLSARRMPVGVLHGGMDKMERQKEL 338
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
KF+ GE R LV ++L+ARGLDV +CD V NL+LPTD HY HRAGRTGR+G G VV+I
Sbjct: 339 AKFRRGEFRALVVSDLAARGLDVDDCDAVFNLELPTDETHYVHRAGRTGRMGSPGVVVTI 398
Query: 517 CEEPEVFVVKKMQKQLAV 534
E E FV+++ ++ L V
Sbjct: 399 AEPQEAFVLERFERNLGV 416
>gi|412986711|emb|CCO15137.1| predicted protein [Bathycoccus prasinos]
Length = 597
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 198/492 (40%), Positives = 266/492 (54%), Gaps = 72/492 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNH------------------DVVIQ 153
F +LG+P +++ L G P+ Q AA+P ++ + +Q
Sbjct: 112 FADLGVPKQIVDLLRNAGIEKPSVAQLAALPELIDLRKLGGEGEEDAKAWSVSMPSIAMQ 171
Query: 154 SYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK---TDIEAVIVAPSRELGMQIVRE 210
S+TGSGKTLAYL+PI + L+++ + + +K D+ A+IVAPS+EL MQIVR
Sbjct: 172 SHTGSGKTLAYLIPIFCDI--LREEEAMEKMDRNQKRHVNDVRAMIVAPSQELAMQIVRT 229
Query: 211 IKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270
I+ +LGP K QQL+GGAN RQEE LRK +P IVVGTPGRIAE+S G L THG
Sbjct: 230 IETVLGPYGKDITQQLIGGANARRQEEGLRKKRPFIVVGTPGRIAEMSRMGVLKTHGVST 289
Query: 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVI 330
LV+DE D+LL+ NFR M RI EH G+ GA + R+TI+ SAT+ +
Sbjct: 290 LVIDEADDLLASNFRRDMARINEHCGK--GA-----------KGGRRTIICSATLKKETM 336
Query: 331 RAARSWGHDPLLVQAKNVI--PLESMPATGPGNLSGPMSGSSSNSNL------------- 375
A D LV A + P+ES + N+
Sbjct: 337 DAYAYVAPDLKLVLADYEMNKPVESADDDDINKTKDDGKEGTKEENIDDGKEEGEEEDIV 396
Query: 376 -QAKQADQ--------------------SLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414
+A++ Q +LPP L+H + L KVD LRR VHA+D Q
Sbjct: 397 EKARREAQMKKQVMINAEEQQVMNRGAVALPPHLQHLFIQADLNRKVDVLRRAVHAMDVQ 456
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
+ F+N R+ KD KL ARGM A LHGD+ K+ R LKKFK+GEVR L+ ++L+A
Sbjct: 457 RCLIFVNFGRRSKDVEGKLSARGMPVASLHGDMDKIQRERVLKKFKSGEVRALLVSDLAA 516
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534
RGLD+ CD V NL+LPTD +HY HRAGRTGR+G G VVSI E+ E FV+ K ++L +
Sbjct: 517 RGLDIPNCDCVFNLELPTDEVHYVHRAGRTGRMGAPGVVVSISEQKENFVLDKFAQKLGI 576
Query: 535 PIQACEFTEGRL 546
I GR+
Sbjct: 577 EIVKASPERGRM 588
>gi|303277827|ref|XP_003058207.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460864|gb|EEH58158.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 427
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 191/445 (42%), Positives = 267/445 (60%), Gaps = 26/445 (5%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
S+ +LGLP L+ L+R GF+ P+ Q AAIP +++ +V +Q++TGSGKT+AYLLP L+
Sbjct: 1 SWTDLGLPKNLVAALQRVGFDEPSAPQVAAIPRLMRGENVALQAHTGSGKTMAYLLPALT 60
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ + E+ ++ ++V PS+EL MQIVR+I++LLG + QQ +GGA
Sbjct: 61 AAAAEEELPAKERSEA-----VQLLVVVPSQELAMQIVRQIERLLGDYGRAITQQCIGGA 115
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N RQEEA+R KP IVVGTPGR+AE+S G L THG + LV+DE D+LL+ NFR M R
Sbjct: 116 NVRRQEEAIRAKKPLIVVGTPGRLAELSRTGILRTHGVKCLVIDEADDLLASNFRRDMAR 175
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN--V 348
I +H G+ + RQT++VSAT+ + D + V A V
Sbjct: 176 ITDHTGK-------------GVLGGRQTVIVSATLRRETLDQYGYMAPDLVHVVAGRAAV 222
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ------SLPPALKHYYCVTKLQHKVD 402
+S+ A S S S+SNSN + D+ SLPP L+HY V + KVD
Sbjct: 223 AREDSVAAVAAAKNSNSDSNSNSNSNSREATDDEVETTNASLPPQLEHYSVVAERGKKVD 282
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
LRR +HA A+ + F+N +L + KL RGM+ LHG + KL R+ L F+ G
Sbjct: 283 RLRRAIHATGAERALVFLNFGHRLSETRDKLATRGMECGVLHGGMNKLERAAELAAFRRG 342
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+ R L+ ++L+ARG+DV E D V NL+LPTD+ HY HRAGRTGR+G G VVSI EE E
Sbjct: 343 DFRALLVSDLAARGIDVPEIDAVFNLELPTDATHYVHRAGRTGRMGASGIVVSIAEEREA 402
Query: 523 FVVKKMQKQLAVPIQACEFTEGRLV 547
FV+ K+ + L V I A + +GR+V
Sbjct: 403 FVLPKLARSLGVEILAADLQKGRVV 427
>gi|295828376|gb|ADG37857.1| AT1G12770-like protein [Neslia paniculata]
Length = 190
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 138/193 (71%), Positives = 167/193 (86%), Gaps = 3/193 (1%)
Query: 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV 394
SW H+P+LVQA V PL+S+ + P ++ ++S +N Q + QSLPPALKHYYC+
Sbjct: 1 SWSHEPVLVQANKVTPLDSVQPSAP---VISLTPTTSEANGQIQTTIQSLPPALKHYYCI 57
Query: 395 TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
+K QHKVDTLRRCVHALDAQ+VIAFMN++RQLKD V+KLEARGM +AE+HGDLGKL RST
Sbjct: 58 SKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRST 117
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
LKKFKNGE++VLVTNELSARGLDVAECDLVVNL+LPTD++HYAHRAGRTGRLGR+GTVV
Sbjct: 118 VLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVV 177
Query: 515 SICEEPEVFVVKK 527
++CEE +VF+VKK
Sbjct: 178 TVCEESQVFIVKK 190
>gi|345288617|gb|AEN80800.1| AT1G12770-like protein, partial [Capsella rubella]
gi|345288619|gb|AEN80801.1| AT1G12770-like protein, partial [Capsella rubella]
gi|345288623|gb|AEN80803.1| AT1G12770-like protein, partial [Capsella rubella]
gi|345288625|gb|AEN80804.1| AT1G12770-like protein, partial [Capsella rubella]
gi|345288627|gb|AEN80805.1| AT1G12770-like protein, partial [Capsella rubella]
Length = 191
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 136/194 (70%), Positives = 167/194 (86%), Gaps = 3/194 (1%)
Query: 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV 394
SW H+P+LVQA V PL+++ + P ++ +++ +N Q + QSLPPALKHYYC+
Sbjct: 1 SWSHEPVLVQANKVTPLDTVQPSAP---VISLTPTTAEANGQIQTTIQSLPPALKHYYCI 57
Query: 395 TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
+K QHKVDTLRRCVHALDAQ+VIAFMN++RQLKD V+KLEARGM +AE+HGDLGKL RST
Sbjct: 58 SKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLERST 117
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
LKKFK GE++VLVTNELSARGLDVAECDLVVNL+LPTD++HYAHRAGRTGRLGR+GTVV
Sbjct: 118 VLKKFKKGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVV 177
Query: 515 SICEEPEVFVVKKM 528
++CEE +VF+VKKM
Sbjct: 178 TVCEESQVFIVKKM 191
>gi|345288621|gb|AEN80802.1| AT1G12770-like protein, partial [Capsella rubella]
gi|345288631|gb|AEN80807.1| AT1G12770-like protein, partial [Capsella rubella]
Length = 191
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 136/194 (70%), Positives = 167/194 (86%), Gaps = 3/194 (1%)
Query: 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV 394
SW H+P+LVQA V PL+++ + P ++ +++ +N Q + QSLPPALKHYYC+
Sbjct: 1 SWSHEPVLVQANKVTPLDTVQPSAP---LISLTPTTAEANGQIQTTIQSLPPALKHYYCI 57
Query: 395 TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
+K QHKVDTLRRCVHALDAQ+VIAFMN++RQLKD V+KLEARGM +AE+HGDLGKL RST
Sbjct: 58 SKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLERST 117
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
LKKFK GE++VLVTNELSARGLDVAECDLVVNL+LPTD++HYAHRAGRTGRLGR+GTVV
Sbjct: 118 VLKKFKKGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVV 177
Query: 515 SICEEPEVFVVKKM 528
++CEE +VF+VKKM
Sbjct: 178 TVCEESQVFIVKKM 191
>gi|345288629|gb|AEN80806.1| AT1G12770-like protein, partial [Capsella rubella]
Length = 191
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/194 (69%), Positives = 167/194 (86%), Gaps = 3/194 (1%)
Query: 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV 394
SW H+P+LVQA V PL+++ + P ++ +++ +N Q + QSLPPALKHYYC+
Sbjct: 1 SWSHEPVLVQANKVTPLDTVQPSAP---VISLTPTTAEANGQIQTTIQSLPPALKHYYCI 57
Query: 395 TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
+K QHKVDTLRRCVHAL+AQ+VIAFMN++RQLKD V+KLEARGM +AE+HGDLGKL RST
Sbjct: 58 SKHQHKVDTLRRCVHALNAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLERST 117
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
LKKFK GE++VLVTNELSARGLDVAECDLVVNL+LPTD++HYAHRAGRTGRLGR+GTVV
Sbjct: 118 VLKKFKKGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVV 177
Query: 515 SICEEPEVFVVKKM 528
++CEE +VF+VKKM
Sbjct: 178 TVCEESQVFIVKKM 191
>gi|295828366|gb|ADG37852.1| AT1G12770-like protein [Capsella grandiflora]
gi|295828368|gb|ADG37853.1| AT1G12770-like protein [Capsella grandiflora]
gi|295828370|gb|ADG37854.1| AT1G12770-like protein [Capsella grandiflora]
gi|295828372|gb|ADG37855.1| AT1G12770-like protein [Capsella grandiflora]
Length = 190
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/193 (69%), Positives = 166/193 (86%), Gaps = 3/193 (1%)
Query: 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV 394
SW H+P+LVQA V PL+++ + P ++ +++ +N Q + QSLPPALKHYYC+
Sbjct: 1 SWSHEPVLVQANKVTPLDTVQPSAP---XISLTPTTAEANGQIQTTIQSLPPALKHYYCI 57
Query: 395 TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
+K QHKVDTLRRCVHALDAQ+VIAFMN++RQLKD V+KLEARGM +AE+HGDLGKL RST
Sbjct: 58 SKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLERST 117
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
LKKFK GE++VLVTNELSARGLDVAECDLVVNL+LPTD++HYAHRAGRTGRLGR+GTVV
Sbjct: 118 VLKKFKKGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVV 177
Query: 515 SICEEPEVFVVKK 527
++CEE +VF+VKK
Sbjct: 178 TVCEESQVFIVKK 190
>gi|295828374|gb|ADG37856.1| AT1G12770-like protein [Capsella grandiflora]
Length = 190
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/193 (69%), Positives = 166/193 (86%), Gaps = 3/193 (1%)
Query: 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV 394
SW H+P+LVQA V PL+++ + P ++ +++ +N Q + QSLPPALKHYYC+
Sbjct: 1 SWSHEPVLVQANKVTPLDTVQPSAP---LISLTPTTAEANGQIQTTIQSLPPALKHYYCI 57
Query: 395 TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
+K QHKVDTLRRCVHALDAQ+VIAFMN++RQLKD V+KLEARGM +AE+HGDLGKL RST
Sbjct: 58 SKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLERST 117
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
LKKFK GE++VLVTNELSARGLDVAECDLVVNL+LPTD++HYAHRAGRTGRLGR+GTVV
Sbjct: 118 VLKKFKKGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVV 177
Query: 515 SICEEPEVFVVKK 527
++CEE +VF+VKK
Sbjct: 178 TVCEESQVFIVKK 190
>gi|302851895|ref|XP_002957470.1| hypothetical protein VOLCADRAFT_68157 [Volvox carteri f.
nagariensis]
gi|300257274|gb|EFJ41525.1| hypothetical protein VOLCADRAFT_68157 [Volvox carteri f.
nagariensis]
Length = 473
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 172/454 (37%), Positives = 239/454 (52%), Gaps = 54/454 (11%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
P+ +Q+AA+P++L + IQSYTGSGKTL+YLLP L+ ++ + +
Sbjct: 4 PSPIQAAALPAVLSGANCAIQSYTGSGKTLSYLLPALTLALRRAERLAADPTTPRRGNVP 63
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKK-AVQQLVGGANRSRQEEALR-KNKPAIVVGT 250
+ ++VAPS+EL MQIVR K L+ + ++ AVQQ++GGAN RQ EAL P +VVGT
Sbjct: 64 DVLVVAPSQELAMQIVRVAKSLMPDNVRRYAVQQVIGGANPKRQAEALALVPGPLVVVGT 123
Query: 251 PGRIAEIS-----AAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
PG AA L + D+LL+ F E ++ I +H GRR A PR
Sbjct: 124 PGECFCFWYTLYLAAASLPPPPPGPPSPPQADQLLASAFAEDINHISDHCGRR--APPRG 181
Query: 306 PKSALAMRAE------RQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGP 359
RQT++VSAT+ V+ + W DP V A V + + P
Sbjct: 182 GAVGEVGVGGGSAACLRQTVLVSATLTPRVLSRSARWCPDPRFVSAGAVPAVVAAAEGTP 241
Query: 360 GNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAF 419
G G G + + ++PP L HY+ V + +HKVD LRR VHAL Q + F
Sbjct: 242 GAAGGGKEGEVNPA--WGWGLVPTMPPQLAHYFMVVEPRHKVDALRRAVHALGVQRALVF 299
Query: 420 MNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDV 479
MN ++L+DA FKL+ARGMKAA LHG++ +LAR+ L F+ G +R LV ++++ARGLDV
Sbjct: 300 MNFQQRLQDAQFKLQARGMKAAALHGEMPRLARANLLNDFRRGRLRALVVSDVAARGLDV 359
Query: 480 AECDLVVNLDLPTDSIHYAHRAGRTGRLGRR----------------------------- 510
CD V +L+LP+ + HYAHRAGRTGRL
Sbjct: 360 PSCDAVFHLELPSSAAHYAHRAGRTGRLSAALAAAAAAEAAEAAAVRPPATATAAAAAGL 419
Query: 511 --------GTVVSICEEPEVFVVKKMQKQLAVPI 536
GTV++I E FVV K+ QL VP+
Sbjct: 420 EDFFAQAAGTVITIVSPSERFVVDKLAAQLGVPL 453
>gi|388513655|gb|AFK44889.1| unknown [Medicago truncatula]
Length = 189
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/150 (72%), Positives = 132/150 (88%), Gaps = 4/150 (2%)
Query: 205 MQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLH 264
MQIVRE +K+LG ++K VQQLVGGANR+RQEEAL+KNKPAIVVGTPGRIAE+SA+GKL
Sbjct: 1 MQIVREFEKILGMDNRKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLR 60
Query: 265 THGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT 324
HGC++LVLDE+DELLSFNFRE MHR++EHVGRRSGA+ ++ A + ERQ IMVSAT
Sbjct: 61 AHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGAD----HNSKAKKTERQLIMVSAT 116
Query: 325 VPFSVIRAARSWGHDPLLVQAKNVIPLESM 354
VPFSV+RAA+SWG DPLLVQAK ++PLE++
Sbjct: 117 VPFSVVRAAKSWGSDPLLVQAKKIVPLETL 146
>gi|373857774|ref|ZP_09600514.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372452445|gb|EHP25916.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 379
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 224/433 (51%), Gaps = 69/433 (15%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
L P L E+ GF T VQ +IP IL+ DV+ +S TG+GKTL+YLLP+L K+ P
Sbjct: 11 LKPFLQAAWEKSGFENLTSVQINSIPFILEGKDVIAESPTGTGKTLSYLLPVLQKIDP-- 68
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
++ ++AVI+A S+EL MQI E++K S ++ +GG N RQ
Sbjct: 69 -----------ERRGVQAVILASSQELVMQIFGEVQKWAEGSGIRSAS-FIGGVNLKRQL 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
E L+K+ P +VVGTPGR+ E+ KL H + +VLDE D+LL I EH+
Sbjct: 117 EKLKKS-PQVVVGTPGRVVELIKQKKLKMHEVKTVVLDEGDQLL----------IPEHLN 165
Query: 297 --RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354
R +P A+RQ ++ SAT+P AR ++P L++
Sbjct: 166 TVRHIVNSPL---------ADRQVLVFSATLPAITEEIARVLTNNPELIKI--------- 207
Query: 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414
S + ++A++ D H Y + + + K+D L++ V L
Sbjct: 208 ---------------SRDETIKAEKVD--------HIYFICEQREKIDILQK-VARLTGI 243
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
+AFMN+ V KL +G+ A LH DL KL R ++LKKF++GE +L+ +++A
Sbjct: 244 KGLAFMNDIATASIVVSKLGYKGISAGILHSDLKKLERQSSLKKFRDGESSLLIATDVAA 303
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534
RGLD+ V+++D P + Y HR+GRTGR G GTVV+I E E +KK ++L +
Sbjct: 304 RGLDIQGITHVIHVDFPKEINQYIHRSGRTGRFGASGTVVAIVTEREERELKKFYRELGI 363
Query: 535 PIQACEFTEGRLV 547
Q F +G +V
Sbjct: 364 VGQKKVFYKGEIV 376
>gi|389818009|ref|ZP_10208502.1| RNA helicase-like protein [Planococcus antarcticus DSM 14505]
gi|388464153|gb|EIM06487.1| RNA helicase-like protein [Planococcus antarcticus DSM 14505]
Length = 386
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 217/434 (50%), Gaps = 67/434 (15%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
L P+ E+ E+ GF +Q IP +L +D+V +S TGSGKTLAY+LPIL +V P
Sbjct: 7 LSPIWQEKWEKAGFETAMPIQEQMIPEMLAGNDIVAESPTGSGKTLAYVLPILERVNP-- 64
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+K I+A+IVAPS+EL MQIV +++ +D V QL+GGAN RQ
Sbjct: 65 -----------EKPAIQAMIVAPSQELSMQIVNVLREWTEDTD-VTVTQLIGGANMQRQL 112
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
E L+K KP IVVGTPGR+ E+ KL H R LVLDE D+L++ R M ++E
Sbjct: 113 EKLKK-KPTIVVGTPGRLNELVKTKKLKMHEIRILVLDEGDQLMAREHRGIMKDLIEKT- 170
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
+ ERQ ++VSAT+ + A P +Q + E +
Sbjct: 171 ----------------QHERQLVLVSATITEEIELVAERLMQHPTRLQ----VTAEDL-- 208
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
PM G ++S ++ + D K + LR H D +
Sbjct: 209 --------PMFGKVTHSFVKVDERD------------------KTEMLRSISHIPDMKG- 241
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+AF+NN QL KL+ R K LH ++ K R L F+ GEV VL+ E++ARG
Sbjct: 242 LAFVNNLDQLLMKENKLKFRDAKIVTLHSEMKKDERKKALDAFRKGEVAVLIATEVAARG 301
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL-AVP 535
LD+ V+++D+P Y HR+GRTGR G G V+++ + KK K+L + P
Sbjct: 302 LDIDLVTHVIHVDVPQTVEQYLHRSGRTGRAGADGEVLTLLAYSDERHYKKFTKELPSKP 361
Query: 536 IQACEFTEGRLVIG 549
+Q G+L+ G
Sbjct: 362 VQKV-IHGGKLIEG 374
>gi|414155170|ref|ZP_11411485.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411453220|emb|CCO09389.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 532
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 136/405 (33%), Positives = 207/405 (51%), Gaps = 65/405 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL + +++ L GF PT +Q AIP +L HDV+ Q+ TG+GKT A+ +P+L +
Sbjct: 10 FGELVINKKIVDGLVEMGFEEPTPIQQLAIPHVLAGHDVIGQAQTGTGKTAAFSIPLLEQ 69
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K ++++I+ P+REL +Q+ EI K+ G + V + GG +
Sbjct: 70 I-------------DFRKKVLQSLIITPTRELAIQVAEEISKI-GRFCRVKVLPIYGGQS 115
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ +LR+ +VVGTPGR+ + L T R +VLDE DE+L F E + I
Sbjct: 116 IERQIRSLRQG-VQVVVGTPGRLLDHLRRHTLKTDQVRLVVLDEADEMLDMGFIEDIEEI 174
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++H+ AERQT++ SAT+P ++R A+ + +P V
Sbjct: 175 LKHIP-----------------AERQTLLFSATMPAEIVRLAQQYMKNPQYV-------- 209
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ S S L A Q DQ YY V + +HK++ L R +
Sbjct: 210 -----------------TVSKSTLTAPQIDQV-------YYEVPE-KHKLEALCRLLDTT 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D I F R + + V L+ARG AA LHGDL + R+ +++F++GEV +LV +
Sbjct: 245 DIAQGIVFCRTKRGVDELVAGLQARGYTAAALHGDLSQQQRNNVMRQFRSGEVELLVATD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
++ARGLD+ V+N D+P D Y HR GRTGR GR G ++I
Sbjct: 305 VAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITI 349
>gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
Alaska E43]
gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
Alaska E43]
gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 526
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 222/421 (52%), Gaps = 64/421 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL +++ ++ GFN P+++Q +IP L+ D++ Q+ TG+GKT AY PIL
Sbjct: 4 NKFYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPIL 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ +NG I+A+I+AP+REL +Q+ E+KKL +K V + GG
Sbjct: 64 SRLN-----DTNG---------IKALILAPTRELAVQVNDELKKL-SKYEKANVLPVYGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ ALRK+ IVVGTPGR+ ++ L + FLVLDE DE+L+ F + +
Sbjct: 109 ESIDRQIRALRKDNIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIDDIE 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ + AERQT++ SAT+P + + A+++ + AK+V
Sbjct: 169 TIISNTP-----------------AERQTLLFSATMPAPIAKLAKNY----MKADAKHV- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ S+L + +Q +Y+ + +H+++ L R +
Sbjct: 207 -------------------AIKRSSLTVSKIEQ-------NYFMINN-KHRLEALCRLLD 239
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + I F + + + V +L+ +G +HGD+ ++ R TTLKKFK G + +L+
Sbjct: 240 LDNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIA 299
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV V+N DLP D Y HR GRTGR R GT S+ E+ ++K++Q
Sbjct: 300 TDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQ 359
Query: 530 K 530
+
Sbjct: 360 R 360
>gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
Eklund 17B]
gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
Eklund 17B]
Length = 526
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 222/421 (52%), Gaps = 64/421 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL +++ ++ GFN P+++Q +IP L+ D++ Q+ TG+GKT AY PIL
Sbjct: 4 NKFYSLGLKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPIL 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ +NG I+A+I+AP+REL +Q+ E+KKL +K V + GG
Sbjct: 64 SRLN-----DTNG---------IKALILAPTRELAVQVNDELKKL-SKYEKANVLPVYGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ ALR++ IVVGTPGR+ ++ L + FLVLDE DE+L+ F E +
Sbjct: 109 ESIDRQIRALRRDNIDIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIEDIE 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ + AERQT++ SAT+P + + A+++ + AK+V
Sbjct: 169 TIISNTP-----------------AERQTLLFSATMPAPIAKLAKNY----MKADAKHV- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ S+L + +Q +Y+ + +H+++ L R +
Sbjct: 207 -------------------AIKRSSLTVSKIEQ-------NYFMINN-KHRLEALCRLLD 239
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + I F + + + V +L+ +G +HGD+ ++ R TTLKKFK G + +L+
Sbjct: 240 LDNPSSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIA 299
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV V+N DLP D Y HR GRTGR R GT S+ E+ ++K++Q
Sbjct: 300 TDVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQ 359
Query: 530 K 530
+
Sbjct: 360 R 360
>gi|298713799|emb|CBJ27171.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 1435
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 228/445 (51%), Gaps = 61/445 (13%)
Query: 108 AANSFLELGLPP-LLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYL 165
A+ SF +LG+ +L+ +++ G + PT+VQ +AI +L ++ DV+I ++TGSGKTLAYL
Sbjct: 832 ASFSFRDLGIQDRTVLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYL 891
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
LP+++ P SN ++AV+VAP REL QI +KL+ + ++
Sbjct: 892 LPLIAATDP----DSNA---------LQAVVVAPGRELASQIFSVCEKLIQGTGLRS-SM 937
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG-CRFLVLDEIDELLSFNF 284
++GGAN RQ E +K KP IV+ TPGR+ E+ + G R +VLDE+D LL +
Sbjct: 938 VIGGANALRQVERFKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPY 997
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAA--RSWGHDPLL 342
+ + I++ A PR RQ + SAT V+ AA R +PL
Sbjct: 998 DQEIDAIMD-------ATPR---------GRRQAVFASATGRSPVVSAASERYMREEPLF 1041
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V + + + Q LP ++H K D
Sbjct: 1042 V-------------------------GGGDLGVGSGQRRGGLPSNIRHTIVTMPKVKKFD 1076
Query: 403 TLRRCVHALD-AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
TLRR ++ ++V+ F+N+ Q+ +LE G+ AA L G+ K R+ +++ ++
Sbjct: 1077 TLRRLLNTQPFPESVMIFVNDPIQVNWLTERLETVGIIAAPLSGESSKDDRAEIMRRLQD 1136
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+ ++VT E++ARGLDVA VVN DLPTD+ HY HRAGR GR GR G VV++
Sbjct: 1137 KRIAMVVTTEMAARGLDVAHLTHVVNYDLPTDADHYVHRAGRCGRAGRPGIVVNMATPDV 1196
Query: 522 VFVVKKMQKQLAVPIQACEFTEGRL 546
FV+ K K L +P CE GR
Sbjct: 1197 KFVMGKFAKSLGLPFDDCEVQGGRF 1221
>gi|456014424|gb|EMF48031.1| ATP-dependent RNA helicase YfmL [Planococcus halocryophilus Or1]
Length = 386
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 148/436 (33%), Positives = 216/436 (49%), Gaps = 71/436 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
L P+ E+ E+ GF+ +Q IP +L +D+V +S TGSGKTLAY+LPIL +V P
Sbjct: 7 LSPIWQEKWEKAGFDAAMPIQDQMIPEMLAGNDIVAESPTGSGKTLAYVLPILERVNP-- 64
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+K I+A+IVAPS+EL MQIV ++ + V QL+GGAN RQ
Sbjct: 65 -----------EKPAIQAMIVAPSQELSMQIVNVLRDWTEGT-AVTVTQLIGGANMQRQL 112
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
E L+K KP IVVGTPGR+ E+ KL H R LVLDE D+L++ R M ++E
Sbjct: 113 EKLKK-KPTIVVGTPGRLNELVKTKKLKMHEIRILVLDEGDQLMAREHRNIMKDLIEKT- 170
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAKNVIPLESM 354
+ +RQ ++VSAT+ + A P L V A+++
Sbjct: 171 ----------------QQDRQLVLVSATITEEIELVAERLMQHPTRLKVTAEDL------ 208
Query: 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414
PM G ++S ++ + D++ L R + +
Sbjct: 209 ----------PMFGKVTHSFIKVDERDKT-------------------ELLRSISHIPGM 239
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
+AF+NN QL KL+ R K LH ++ K R L F+ GEV VL+ E++A
Sbjct: 240 KALAFVNNLDQLLMKENKLKFRDAKIVTLHSEMKKDERKKALDAFRKGEVAVLIATEVAA 299
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL-A 533
RGLD+ VV++D+P Y HR+GRTGR G G V+++ + KK K+L +
Sbjct: 300 RGLDIDLVTHVVHVDVPQTIEQYLHRSGRTGRAGADGEVLTLLAYADERHYKKFTKELPS 359
Query: 534 VPIQACEFTEGRLVIG 549
P+Q G+L+ G
Sbjct: 360 KPVQKI-IHSGKLIEG 374
>gi|392425585|ref|YP_006466579.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
gi|391355548|gb|AFM41247.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
Length = 402
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 220/440 (50%), Gaps = 65/440 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A SF +LGL L+ L+++G N PT +Q AIP I+KN DVV QS TG+GKTLAYLLPI
Sbjct: 2 AASFAQLGLKEELILALKQQGINEPTAIQEQAIPLIIKNFDVVGQSQTGTGKTLAYLLPI 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ-LV 227
K+ LK+++ +A+I+ P+ EL +QI EI+ L S ++
Sbjct: 62 FQKIDVLKNET-------------QALILTPTHELALQIQGEIEMLAKNSGVLVTSAVII 108
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
G N +RQ E L K K I+VG+ GR+ E+ K+ + ++LDE D L N +
Sbjct: 109 GNVNIARQIEKL-KGKQHIIVGSSGRVLELIRKRKISASTIKTIILDEADRLFDENNYKD 167
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ +++ R + Q ++ SAT+P S ++ A++ +P +V+
Sbjct: 168 VMAVLKTTLR-----------------DTQLVLFSATLPDSALKQAKNVLKNPKIVR--- 207
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ P PG + H+Y V + + K++ LR+
Sbjct: 208 ---ISEKPKIAPG---------------------------ISHFYFVAEQRDKIEVLRKL 237
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ ++ + F+N + ++ V KL+ G++ ++G K+ R + FK G +++L
Sbjct: 238 IRLMNPTRSLIFINKSEDIETIVEKLKFHGLETEGIYGGASKVDRGKAMDDFKRGRIKLL 297
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V ++L+ARGLD+ + NLDLP D Y HR GRTGR G G VS+ + E+ + K
Sbjct: 298 VASDLAARGLDIKGVSHIFNLDLPEDPQLYLHRVGRTGRAGEDGVAVSLVTKYEISSLNK 357
Query: 528 MQKQLAVPIQACEFTEGRLV 547
+++ V I E G+++
Sbjct: 358 LERDYGVKIYPKEMAFGKII 377
>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 538
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 215/435 (49%), Gaps = 69/435 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L P L+ +E G+ P+ +Q+ AIP +L D++ Q+ TG+GKT A++LPIL
Sbjct: 5 TFKDLALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPILE 64
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ P K +++A+++ P+REL +Q+ E KK + + + GG
Sbjct: 65 KIDP-------------KNKNVQALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQ 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q AL+K IVVGTPGR+ + G L + LVLDE DE+L+ F++ +
Sbjct: 112 SYDPQIRALKKG-VQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEE 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+E + P+S RQT+M SAT+ ++ A+++ +P +V+
Sbjct: 171 ILE----------KTPES-------RQTVMFSATMAREIMNIAKTYQKNPEVVKV----- 208
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ L K+ DQ YY K Q +V + RC+
Sbjct: 209 --------------------VSEELSNKKIDQ--------YYVEVKRQDRVQAMIRCIDM 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + I F N R++ + V KL+ G LHGDL + R + F+ V +LV
Sbjct: 241 MGLTSSIVFTNTKREVDELVSKLQEEGYVTEGLHGDLKQAQRDRVMNSFRRKNVNILVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ- 529
+++ARG+DV+ + V N D+P + +Y HR GRTGR G G ++ ++F +++++
Sbjct: 301 DIAARGIDVSNVEAVFNYDIPLNEENYVHRIGRTGRAGMTGLSITFVFGKDMFRIRRIED 360
Query: 530 ----KQLAVPIQACE 540
K +PI + E
Sbjct: 361 YTKTKMSKMPIPSVE 375
>gi|323489782|ref|ZP_08095007.1| RNA helicase-like protein [Planococcus donghaensis MPA1U2]
gi|323396520|gb|EGA89341.1| RNA helicase-like protein [Planococcus donghaensis MPA1U2]
Length = 386
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/436 (33%), Positives = 215/436 (49%), Gaps = 71/436 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
L P+ E+ E+ GF +Q IP +L +D+V +S TGSGKTLAY+LPIL +V P
Sbjct: 7 LSPIWQEKWEKAGFEAAMPIQDQMIPEMLAGNDIVAESPTGSGKTLAYVLPILERVNP-- 64
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+K I+A+IVAPS+EL MQIV +++ V QL+GGAN RQ
Sbjct: 65 -----------EKPAIQAMIVAPSQELSMQIVNVLREW-TEGTAVTVTQLIGGANMQRQL 112
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
E L+K KP IVVGTPGR+ E+ KL H R LVLDE D+L++ R M ++E
Sbjct: 113 EKLKK-KPTIVVGTPGRLNELVKTKKLKMHEIRMLVLDEGDQLMAREHRNIMKDLIEKT- 170
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAKNVIPLESM 354
+ +RQ ++VSAT+ + A P L V A+++
Sbjct: 171 ----------------QHDRQLVLVSATITEEIELVAERLMQHPTRLKVTAEDL------ 208
Query: 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414
PM G ++S ++ + D++ L R + +
Sbjct: 209 ----------PMFGKVTHSFIKVDERDKT-------------------ELLRSISHIPGM 239
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
+AF+NN QL KL+ R K LH ++ K R L F+ GEV VL+ E++A
Sbjct: 240 KALAFVNNLDQLLMKENKLKFRDAKIVTLHSEMKKDERKKALDAFRKGEVAVLIATEVAA 299
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL-A 533
RGLD+ VV++D+P Y HR+GRTGR G G V+++ + KK K+L +
Sbjct: 300 RGLDIDLVTHVVHVDVPQTIEQYLHRSGRTGRAGADGEVLTLLAYADERHYKKFTKELPS 359
Query: 534 VPIQACEFTEGRLVIG 549
P+Q G+L+ G
Sbjct: 360 KPVQKI-IHGGKLIEG 374
>gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase [Desulfotomaculum acetoxidans DSM 771]
gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
DSM 771]
Length = 539
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 200/410 (48%), Gaps = 64/410 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
AA F EL L +++ L GF PT +Q IP L+ D++ Q+ TG+GKT A+ +P
Sbjct: 10 AAAKFGELTLNSRIVQALVNMGFEEPTPIQQKTIPISLEGKDIIGQAQTGTGKTAAFAIP 69
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+L K+ D NG ++A+I+ P+REL +Q+ EI + G + +
Sbjct: 70 VLEKI----DSRRNG---------VQALIITPTRELAIQVAEEISNI-GKYCRIRALPIY 115
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + RQ +AL++ + IV+GTPGR+ + G L +VLDE DE+L F E
Sbjct: 116 GGQSIDRQIKALKQQRVQIVIGTPGRLLDHLRRGTLRLEQVATVVLDEADEMLDMGFIED 175
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I+ P + RQT + SAT+P ++R +R + + P +
Sbjct: 176 IEAILNQT----------PTT-------RQTFLFSATIPEEILRLSRKYLNSPEFI---- 214
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ S +NL P ++ Y T+ K+D L R
Sbjct: 215 ---------------------TVSRNNLTV--------PLIEQVYYETRESTKLDALARL 245
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ ALD I F R + + V L+ RG +AA LHGDL + R+ +++FK G+V L
Sbjct: 246 LDALDISLAIIFCRTKRGVDELVASLQVRGYQAAGLHGDLSQYQRNHVMRQFKAGQVEFL 305
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
V +++ARGLD+ V+N D+P D Y HR GRTGR G+ G +S+
Sbjct: 306 VATDVAARGLDIENVSHVINFDVPQDPEFYVHRIGRTGRAGKTGMAISLV 355
>gi|406981744|gb|EKE03149.1| hypothetical protein ACD_20C00242G0002 [uncultured bacterium]
Length = 634
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 212/444 (47%), Gaps = 65/444 (14%)
Query: 95 GVKKSLEIE-SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQ 153
G+ +S+ IE S F ELG+ +L ++ GF + +QS AIP +L D++ Q
Sbjct: 7 GMCESINIERSNKMTKLRFEELGISTEILAAVKDMGFEEASPIQSEAIPILLSGKDLIGQ 66
Query: 154 SYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213
+ TG+GKT A+ +P++ K+ P +++AVI+ P+REL +Q+ E +K
Sbjct: 67 AQTGTGKTAAFAIPVIEKLDP-------------NSKELQAVILCPTRELVIQVSEEFRK 113
Query: 214 LLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVL 273
LL + V + GG RQ L++ +V+GTPGR + G + H + +VL
Sbjct: 114 LLKYKENLWVTPIYGGQEIERQLRTLKRG-VQVVIGTPGRTMDHMRRGSIKMHSVQTVVL 172
Query: 274 DEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAA 333
DE DE+L FRE M I++ PK ERQTIM SAT+ ++
Sbjct: 173 DEADEMLDMGFREDMEIILKDT----------PK-------ERQTIMFSATMAKDILELT 215
Query: 334 RSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC 393
+ + DP ++ +N + A P ++ Y
Sbjct: 216 KQYQVDPAIINV-------------------------TNKKIHA--------PKIEQVYF 242
Query: 394 VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARS 453
+ ++K + L R + + + + F N Q+ V L+ RG A LHGD+ + R
Sbjct: 243 EVQEKNKPEVLARLLDIHNVKLALVFCNTKSQVDQLVENLKTRGYFADALHGDMSQNQRD 302
Query: 454 TTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTV 513
+ F+NG V +LV +++ RG+DV + + V N DLP D Y HR GRT R G+ GT
Sbjct: 303 RVMNGFRNGSVEILVATDVAGRGIDVNDIEAVFNYDLPRDDEDYTHRIGRTARAGKTGTA 362
Query: 514 VSICEEPEVFVVKKMQKQLAVPIQ 537
+ +++ +K++++ + IQ
Sbjct: 363 FTFITGKQIYSLKRIERSNGIKIQ 386
>gi|410723166|ref|ZP_11362411.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
gi|410603370|gb|EKQ57804.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
Length = 526
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 211/421 (50%), Gaps = 66/421 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL +++ + GF P+++Q +IP L D++ Q+ TG+GKT AY LPI+
Sbjct: 4 NQFATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPII 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+K+ S+ G I+A+I+AP+REL +Q+ EI++L +K V + GG
Sbjct: 64 TKM-------SDSKG-------IKALILAPTRELAVQVKEEIERL-SKYEKTEVLAIYGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ AL+K IVVGTPGRI ++ LH FLVLDE DE+L+ F + M
Sbjct: 109 DSIDRQIRALKKGTVDIVVGTPGRILDLIKRKCLHLDSIEFLVLDEADEMLNMGFIDDME 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH-DPLLVQAKNV 348
I+ H +ERQT++ SAT+P + + A+ + D LV K
Sbjct: 169 EILSHTP-----------------SERQTLLFSATMPDPIAKLAKRYMKPDAKLVSIKK- 210
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S+L + +QS Y+ + +H+++ L R +
Sbjct: 211 ------------------------SSLTVSKIEQS-------YFMINN-KHRLEALCRLL 238
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ + I F R + + V +L+++G +HGD+ + R TTL KFK G + +L+
Sbjct: 239 DLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLI 298
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+DV V N DLP D Y HR GRTGR + GT S+ ++K++
Sbjct: 299 ATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRADKSGTAYSLVTPKYFSMLKQI 358
Query: 529 Q 529
Q
Sbjct: 359 Q 359
>gi|451822522|ref|YP_007458723.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451788501|gb|AGF59469.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 525
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 212/420 (50%), Gaps = 64/420 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL +++ + GF P+++Q +IP L D++ Q+ TG+GKT AY LPIL
Sbjct: 4 NQFATLGLKESIVKAISDLGFTEPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIL 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+K+ K I+A+++AP+REL +Q+ EI++L +K V + GG
Sbjct: 64 TKMSD--------------KKGIKALVLAPTRELAVQVNEEIQRL-SKYEKTEVLSVYGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ ALRK IVVGTPGR+ ++ LH FLVLDE DE+L+ F + +
Sbjct: 109 DSIDRQIRALRKGTVDIVVGTPGRMLDLIKRKCLHLDSIEFLVLDEADEMLNMGFIDDIE 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ H ERQT++ SAT+P + + A+ + + A++V
Sbjct: 169 EILSHTP-----------------TERQTLLFSATMPDQIKKLAKRY----MKADAQHV- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S S+L + +QS Y+ + +H+++ L R +
Sbjct: 207 -------------------SIKKSSLTVSKIEQS-------YFMINN-KHRLEALCRLLD 239
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + + I F R + + V +L+++G +HGD+ + R TTL KFK G + +L+
Sbjct: 240 SDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLSLLIA 299
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV V N DLP D Y HR GRTGR + GT S+ + ++K++Q
Sbjct: 300 TDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFAMLKQIQ 359
>gi|251779418|ref|ZP_04822338.1| ATP-dependent RNA helicase [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083733|gb|EES49623.1| ATP-dependent RNA helicase [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 382
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 215/438 (49%), Gaps = 66/438 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
S +L L ++ LE++ VPTE+QS I L+N D++ +S+TGSGKTLAY+LPI
Sbjct: 4 SLNDLNLNSDIISALEKQNITVPTEIQSLVINEALENKDIIGESFTGSGKTLAYVLPIFE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
++ +K DI+A+I+AP+ EL MQI +I KLL + V+ L +G
Sbjct: 64 RINT-------------EKKDIQAIILAPTHELVMQIEAQI-KLLSDNSGINVKSLGIIG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
N + Q + L++ KP I+VG+ GR+ ++ K+ H + +V+DE+D LL + +
Sbjct: 110 DVNINNQIKKLKEVKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQIV 169
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I++ R +RQ + SA++ ++ + + DPL+V++
Sbjct: 170 KDIIKTTMR-----------------DRQLMAFSASITPEIVDSLKELMKDPLIVKS--- 209
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
Q S+ P + H Y + K + LR+ +
Sbjct: 210 ------------------------------QGKSSINPNISHVYVKCDRRDKFEVLRKII 239
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A D + + F+N+ + ++ KL + + G + K R + FK G++++LV
Sbjct: 240 AAEDPKRALIFVNDNKDIELTSLKLNYHNRECFAMSGSISKEERKNAIDSFKTGKIKILV 299
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
++++SARGLD+ + V NLDLP Y HR+GRT R +GT + I + ++ ++KK
Sbjct: 300 SSDVSARGLDITDITHVFNLDLPLKLDEYLHRSGRTARGNAKGTSICIVTDKQMNIIKKY 359
Query: 529 QKQLAVPIQACEFTEGRL 546
+K V Q + G L
Sbjct: 360 EKAFDVEFQEKIISNGVL 377
>gi|188590398|ref|YP_001920680.1| ATP-dependent RNA helicase [Clostridium botulinum E3 str. Alaska
E43]
gi|188500679|gb|ACD53815.1| ATP-dependent RNA helicase [Clostridium botulinum E3 str. Alaska
E43]
Length = 382
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 128/438 (29%), Positives = 216/438 (49%), Gaps = 66/438 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
S +L L ++ LE++ VPTE+QS I L+N D++ +S+TGSGKTLAYLLPI
Sbjct: 4 SLNDLNLSSDIISALEKQNITVPTEIQSLVINEALENKDIMGESFTGSGKTLAYLLPIFE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
++ N E+ DI+A+I+AP+ EL MQI +I KLL + V+ L +G
Sbjct: 64 RI----------NTETK---DIQAIILAPTHELVMQIEAQI-KLLSDNSGINVKSLGIIG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
N + Q + L++ KP I+VG+ GR+ ++ K+ H + +V+DE+D LL + +
Sbjct: 110 DVNINNQIKKLKEVKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQIV 169
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I++ R +RQ + SA++ ++ + + DPL+V++
Sbjct: 170 KDIIKTTMR-----------------DRQLMAFSASITPEIVDSLKELMKDPLIVKS--- 209
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
Q S+ P + H Y + K + LR+ +
Sbjct: 210 ------------------------------QGKSSINPNISHVYVKCDRRDKFEVLRKII 239
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A D + + F+N+ + ++ KL + + G + K R + FK G++++LV
Sbjct: 240 AAEDPKRALIFVNDNKDIELTSLKLNYHNRECFAMSGSISKEERKNAIDSFKTGKIKILV 299
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
++++SARGLD+ + V NLDLP Y HR+GRT R +GT + I + ++ ++KK
Sbjct: 300 SSDVSARGLDITDITHVFNLDLPLKLDEYLHRSGRTARGNAKGTSICIVTDKQMNIIKKY 359
Query: 529 QKQLAVPIQACEFTEGRL 546
+K V Q + G L
Sbjct: 360 EKAFDVEFQEKIISNGVL 377
>gi|291277508|ref|YP_003517280.1| DEAD box helicase [Helicobacter mustelae 12198]
gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
Length = 513
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 215/434 (49%), Gaps = 67/434 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A F LGL +L+ + GF +PT +Q AIP+IL+ DV+ Q+ TG+GKT A+ LPI
Sbjct: 16 AEGFENLGLSKTVLKGVLDAGFRMPTPIQEQAIPAILQERDVIAQAQTGTGKTAAFTLPI 75
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L + IEA+I+ P+REL MQ+ EI KL P + K V + G
Sbjct: 76 LEMLH--------------HNQSIEALIITPTRELTMQVSDEIYKLGRPKNIKTVC-VYG 120
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ E L KN P I+V TPGR+ + +G+L RF+VLDE DE+L F + +
Sbjct: 121 GQSIKRQCELLAKN-PQIMVATPGRLLDHLKSGRLDNFTPRFVVLDESDEMLDMGFLDDI 179
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I ++ P + Q ++ SAT+P ++ + A+ H+P+ ++ +
Sbjct: 180 EEIFNYL----------PNNI-------QVLLFSATMPEAIKKLAQRILHNPIHIK---I 219
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
P +M +NL Q YYCV + + L R +
Sbjct: 220 TPTANM------------------TNLDVTQ-----------YYCVIGEGERQEALMRIL 250
Query: 409 HALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ I F T++ D ++ LEARG KA LHGD+ + R + FK ++L
Sbjct: 251 DTENIYKSIIF-TRTKKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDFKKCHYKIL 309
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V ++++RGLD+++ V N +PT+S Y HR GRTGR G++G ++ E +KK
Sbjct: 310 VATDVASRGLDISDVSHVFNYHIPTNSEVYVHRIGRTGRAGKKGKAITFVTPLEFKDLKK 369
Query: 528 MQKQLAVPIQACEF 541
+Q+ + ++ E
Sbjct: 370 IQEDVGSKLEIYEI 383
>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 525
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 133/421 (31%), Positives = 211/421 (50%), Gaps = 66/421 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL +++ + GF P+++Q +IP L D++ Q+ TG+GKT AY LPI+
Sbjct: 4 NQFATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPII 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+K+ S+ G I+++I+AP+REL +Q+ EI++L +K + GG
Sbjct: 64 TKM-------SDNRG-------IKSLILAPTRELAVQVNEEIQRL-SKYEKIVTLAVYGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ ALRK IVVGTPGRI ++ LH FLVLDE DE+L+ F + +
Sbjct: 109 DSIDRQIRALRKGDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQ 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH-DPLLVQAKNV 348
I+ H +ERQT++ SAT+P + + A+ + D LV K
Sbjct: 169 EILSHTP-----------------SERQTLLFSATMPDPIAKLAKKYMKPDAKLVSIKR- 210
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S+L + +QS Y+ + +H+++ L R +
Sbjct: 211 ------------------------SSLTVSKIEQS-------YFMINN-KHRLEALCRLL 238
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ + I F R + + V +L+++G +HGD+ + R TTL KFK G + +L+
Sbjct: 239 DLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLI 298
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+DV V N DLP D Y HR GRTGR + GT S+ + ++K++
Sbjct: 299 ATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQI 358
Query: 529 Q 529
Q
Sbjct: 359 Q 359
>gi|359409801|ref|ZP_09202266.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
gi|357168685|gb|EHI96859.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
Length = 525
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 211/421 (50%), Gaps = 66/421 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL ++ + GF P+++Q +IP L D++ Q+ TG+GKT AY LPIL
Sbjct: 4 NQFATLGLKESIVRAISDLGFTQPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIL 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+K+ SN G I+A+++AP+REL +Q+ EI++L +K V + GG
Sbjct: 64 TKM-------SNARG-------IKALVLAPTRELAVQVNDEIQRL-SKYEKAEVLSVYGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ AL+K IVVGTPGR+ ++ LH FLVLDE DE+L+ F + +
Sbjct: 109 DSIDRQIRALKKGTVDIVVGTPGRLLDLLKRKCLHLDNIEFLVLDEADEMLNMGFIDDIE 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH-DPLLVQAKNV 348
I+ H +ERQT++ SAT+P + + A+ + D LV K
Sbjct: 169 AILSHTP-----------------SERQTLLFSATMPDPIAKLAKRYMKPDAKLVTIKK- 210
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S+L + +QS Y+ + +H+++ L R +
Sbjct: 211 ------------------------SSLTVSKIEQS-------YFMINN-KHRLEALCRLL 238
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ + I F R + + V +L+++G +HGD+ + R TTL KFK G + +L+
Sbjct: 239 DLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLSLLI 298
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+DV V N DLP D Y HR GRTGR + GT S+ + ++K++
Sbjct: 299 ATDVAARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQI 358
Query: 529 Q 529
Q
Sbjct: 359 Q 359
>gi|187934350|ref|YP_001885537.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
17B]
gi|187722503|gb|ACD23724.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
17B]
Length = 382
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 128/438 (29%), Positives = 215/438 (49%), Gaps = 66/438 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
S +L L ++ LE++ VPTE+QS I L+N D++ +S+TGSGKTLAYLLPI
Sbjct: 4 SLNDLNLSSDIINALEKQNITVPTEIQSLVINEALENKDIMGESFTGSGKTLAYLLPIFE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
++ N E+ DI+A+I+AP+ EL MQI +I KLL + V+ L +G
Sbjct: 64 RI----------NTETK---DIQAIILAPTHELVMQIEAQI-KLLSDNSGINVKSLGIIG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
N + Q + L++ KP I+VG+ GR+ ++ K+ H + +V+DE+D LL + +
Sbjct: 110 DVNINNQIKKLKEVKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQIV 169
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I++ R +RQ + SA++ ++ + DPL+V++
Sbjct: 170 KDIIKTTMR-----------------DRQLMAFSASITPEIVDSLNELMKDPLIVKS--- 209
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
Q S+ P + H Y + K + LR+ +
Sbjct: 210 ------------------------------QGKSSINPNISHVYVKCDRRDKFEVLRKII 239
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A D + + F+N+ + ++ KL + + G + K R + FK G++++LV
Sbjct: 240 AAEDPKRALIFVNDNKDIELTSLKLNYHNRECFAMSGSISKEERKNAIDSFKTGKIKILV 299
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
++++SARGLD+ + V NLDLP Y HR+GRT R +GT + I + ++ ++KK
Sbjct: 300 SSDVSARGLDITDITHVFNLDLPLKLDEYLHRSGRTARGNAKGTSICIVTDKQMNIIKKY 359
Query: 529 QKQLAVPIQACEFTEGRL 546
+K V Q + G L
Sbjct: 360 EKAFDVEFQEKIISNGIL 377
>gi|383753236|ref|YP_005432139.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381365288|dbj|BAL82116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 411
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 136/429 (31%), Positives = 215/429 (50%), Gaps = 66/429 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
++F+E G+ L L+++G P +VQ+ IP +L ++V Q+ TG+GKTLAYLLP L
Sbjct: 2 SNFIETGISEALTAVLKKQGIESPMQVQAEVIPKVLGGGNLVAQAPTGTGKTLAYLLPAL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVG 228
K+ D +S D++ VI+AP+ EL MQI + L G + VQ L+G
Sbjct: 62 QKI----DAASR---------DVQVVILAPTYELAMQITNVARDLAQGANLGIKVQGLIG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GAN +RQ + L K+KP ++VG+ GRI E++ KL + LVLDE D L
Sbjct: 109 GANIARQMDKL-KDKPQLIVGSAGRIIELAQKNKLKLQHVKMLVLDEFDRLFDD------ 161
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+++G + P+ +RQ IMVSAT P + A H +
Sbjct: 162 ----QNMGNTADVVRLLPE-------DRQVIMVSATAPKKALERADFLQH-------PEI 203
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
I +E+ PA+ + NL Y +T + KV+T+R
Sbjct: 204 IKVEADPAS-----------QNQRENL----------------YRMTPFRSKVETVRHLA 236
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L + + F+N + + +L G L G K AR + FK G +++L+
Sbjct: 237 RRLAVKRGLVFINKVFDAERILAQLRYEGFMVGTLLGHNNKQARQKAIADFKAGRIKLLL 296
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+ +L+ARGLD+ E D V NLDLP + Y HRAGRT R G +GTV+++ + E + ++++
Sbjct: 297 STDLAARGLDIPEVDYVFNLDLPESAEVYLHRAGRTARAGAKGTVITLADNKEAYKLEQL 356
Query: 529 QKQLAVPIQ 537
+++L + +
Sbjct: 357 ERKLGIDFK 365
>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 536
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/456 (28%), Positives = 221/456 (48%), Gaps = 78/456 (17%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL + P +L +E GF PT +Q +IP IL DV Q+ TG+GKT A+ +P++ K
Sbjct: 7 FNELNISPEILRAIEDMGFEEPTPIQQRSIPLILSGRDVTGQAQTGTGKTAAFAIPLIEK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P +K +++++++P+REL +QI E +LL V + GG
Sbjct: 67 IEP-------------EKCSVQSIVLSPTRELTIQISEEFNRLLKYRKDIRVLPVYGGQA 113
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ L+K I++GTPGR+ + G L G + +VLDE D++L FRE M I
Sbjct: 114 IERQLHELKKG-VHIIIGTPGRVMDHMKRGTLSLSGIKTVVLDEADQMLEMGFREDMEEI 172
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + P ERQTI+ SAT+P +++ ++S+ P V
Sbjct: 173 LS----------KAP-------GERQTILFSATMPKPILKISKSFQKKPEFV-------- 207
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
PG L+ P+ ++ Y + + K++ L R +
Sbjct: 208 ----TINPGQLTVPL---------------------IEQKYLEVREKDKLEVLCRLIDIN 242
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + F N + + + L +RG A LHGD+ + R + +F++G + +L+ +
Sbjct: 243 SSDLSMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIATD 302
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF---VVKKM 528
++ARG+D+ + D+V N D+P D +Y HR GRTGR G+ G + E++ ++KK+
Sbjct: 303 VAARGIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYKLRMIKKI 362
Query: 529 QK----QLAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
K ++A+P A + R+ EK L+ V+
Sbjct: 363 AKVNIVRIAIP-NAADVENSRI------EKVLDRVK 391
>gi|376284519|ref|YP_005157729.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
gi|371578034|gb|AEX41702.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
Length = 680
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFESLGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRI-------------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V N D+P D+ Y HR GRTGR GR G +
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAI 407
>gi|376248300|ref|YP_005140244.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|376251090|ref|YP_005137971.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|376256907|ref|YP_005144798.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
gi|372112594|gb|AEX78653.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|372114868|gb|AEX80926.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|372119424|gb|AEX83158.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
Length = 682
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRI-------------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V N D+P D+ Y HR GRTGR GR G +
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAI 407
>gi|38233613|ref|NP_939380.1| DEAD/DEAH box helicase [Corynebacterium diphtheriae NCTC 13129]
gi|376242613|ref|YP_005133465.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
gi|372105855|gb|AEX71917.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 680
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRI-------------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V N D+P D+ Y HR GRTGR GR G +
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAI 407
>gi|376287519|ref|YP_005160085.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
gi|371584853|gb|AEX48518.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
Length = 680
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRI-------------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V N D+P D+ Y HR GRTGR GR G +
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAI 407
>gi|419860593|ref|ZP_14383234.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982987|gb|EIK56486.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 667
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRI-------------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V N D+P D+ Y HR GRTGR GR G +
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAI 407
>gi|376293035|ref|YP_005164709.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
gi|372110358|gb|AEX76418.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
Length = 682
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRI-------------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V N D+P D+ Y HR GRTGR GR G +
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAI 407
>gi|375292864|ref|YP_005127403.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
gi|371582535|gb|AEX46201.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
Length = 676
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRIDV-------------KKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V N D+P D+ Y HR GRTGR GR G +
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAI 407
>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
Length = 532
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 201/406 (49%), Gaps = 65/406 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F L L +++ L+ GF PT +Q A+P +L +D++ Q+ TG+GKT A+ +P++ +
Sbjct: 10 FGNLELDRRIVDGLKEMGFEEPTPIQQLAVPQVLAGYDMIGQAQTGTGKTAAFSIPMIER 69
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P +K +++ +I+ P+REL +Q+ EI K+ G + V + GG +
Sbjct: 70 LNP-------------RKREVQTIIITPTRELAIQVAEEISKI-GRFSRIKVLPIYGGQS 115
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ +LR +VVGTPGR+ + L ++LDE DE+L F E + I
Sbjct: 116 IERQIRSLRLG-VQVVVGTPGRLLDHLRRQTLKVDQVDMVILDEADEMLDMGFIEDIEEI 174
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ H AERQT++ SAT+P +IR A+ + DP V
Sbjct: 175 IRHTP-----------------AERQTLLFSATMPQEIIRLAQQYMTDPKYV-------- 209
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ S +NL Q +Q A + ++K++ L R +
Sbjct: 210 -----------------TVSKTNLTVPQIEQVFYEAPE--------KNKLEALCRILDIS 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D I F R + + V L+ARG AA LHGDL + R+T +++F++ EV +LV +
Sbjct: 245 DISQGILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVELLVATD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++ARGLD+ V+N D+P D Y HR GRTGR GR G ++I
Sbjct: 305 VAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITII 350
>gi|376254085|ref|YP_005142544.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
gi|372117169|gb|AEX69639.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
Length = 705
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRI-------------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V N D+P D+ Y HR GRTGR GR G +
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAI 407
>gi|376290134|ref|YP_005162381.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372103530|gb|AEX67127.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 682
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFEALGLPEAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRI-------------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V N D+P D+ Y HR GRTGR GR G +
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAI 407
>gi|300854098|ref|YP_003779082.1| ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300434213|gb|ADK13980.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
13528]
Length = 382
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 137/439 (31%), Positives = 217/439 (49%), Gaps = 68/439 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELG+ + E L++EG E+Q AIP L DVV +S TGSGKTLAY++PI K
Sbjct: 6 FNELGINEEITEGLKKEGIEYAAEIQYKAIPEALLGKDVVGESETGSGKTLAYIVPIFQK 65
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSD---KKAVQQLVG 228
+ + ES D++A I+AP+ EL +QI IK L SD + A ++G
Sbjct: 66 I----------DFES---KDVQAYILAPTHELAIQIHNVIKNLACNSDIPVRSAA--IIG 110
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
N RQ E L+ KP IVVG+ GRI ++ KL +H + +V+DE D+LL N +
Sbjct: 111 NVNIKRQVEILKNEKPHIVVGSTGRILQLIKMKKLKSHNVKIIVVDEADKLLDKNNINDV 170
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ K+ L ERQ + SAT+ + AR D ++A+
Sbjct: 171 KAII--------------KTTL---KERQLMFFSATIDDRTLDIARDLMKDYKFIKAE-- 211
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+S N N +KH + + + K+ LR+ V
Sbjct: 212 ------------------QKTSMNEN-------------IKHMCFMCERRDKILILRKLV 240
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
H L+ + I F+N +++ KL+ ++A ++G K R L+ FK G++ +LV
Sbjct: 241 HILNPKRAIVFVNKPDEIEILTEKLKYHKLRAQAIYGAEDKKVRKRALESFKLGKINLLV 300
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
++++ARGLD+ + D V + D+P D +Y HR+GRT R G+ GT + I E ++K+
Sbjct: 301 ASDIAARGLDIDDVDYVFSYDIPEDPDNYLHRSGRTARAGKEGTSICIITNKEQKLLKQY 360
Query: 529 QKQLAVPIQACEFTEGRLV 547
+K + I + +G+++
Sbjct: 361 EKSFNIKIDLKDIYKGKII 379
>gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
str. F0332]
Length = 767
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 218/445 (48%), Gaps = 67/445 (15%)
Query: 97 KKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYT 156
KKS ++ S+ F +LGLP LL ++ GF+ PT +Q+AAIP +L+ DVV + T
Sbjct: 117 KKSDDVNSSDVL---FDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQT 173
Query: 157 GSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216
G+GKT A+ LP+L+ + P +K +++A+++AP+REL MQ + I+
Sbjct: 174 GTGKTAAFALPLLAHIDP-------------EKREVQALVLAPTRELAMQGAQAIESFAA 220
Query: 217 PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276
S V + GG++ Q +AL + +VVGTPGRI ++ G L R+ VLDE
Sbjct: 221 KSRGVDVAAVYGGSSYLPQLKAL-EGGAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEA 279
Query: 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
DE+L F E + +I V P+ R + + SAT+P + R A
Sbjct: 280 DEMLRMGFAEDVEKIASEV----------PEG-------RISALFSATMPPPIRRVAERH 322
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
L A+ V +S P + S+ +K Y V
Sbjct: 323 -----LSDAEEV------------TISRPATTVST----------------VKQMYAVVP 349
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
+HK+ L R + +AQ + F+ +D +L ARG+ A L GD+ + R +
Sbjct: 350 ERHKIGALARVLAVTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLV 409
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+ ++G + VLV +++ARGLDV LVVN D+P ++ Y HR GRTGR GR G ++
Sbjct: 410 ARLRDGTLDVLVATDVAARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITF 469
Query: 517 CEEPEVFVVKKMQKQLAVPIQACEF 541
E +++++KQ ++ E
Sbjct: 470 VTPKERPRLRRIEKQTGSRMEQIEL 494
>gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
DSM 574]
gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
DSM 574]
Length = 532
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 201/405 (49%), Gaps = 65/405 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F L L +++ L GF PT +Q A+P +L HD++ Q+ TG+GKT A+ +P++++
Sbjct: 10 FGNLELDSCIVQGLVDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIPLVAR 69
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + +K ++A+I+ P+REL +Q+ EI K+ G + V + GG +
Sbjct: 70 L-------------NFRKRGVQAIIITPTRELAIQVGEEINKI-GRYRRARVLPIYGGQS 115
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ +LR+ +VVGTPGR+ + L +VLDE DE+L F + + I
Sbjct: 116 IERQIRSLRQGV-HVVVGTPGRLLDHLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEI 174
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ H ERQT++ SAT+P + R AR + DP V
Sbjct: 175 LRHTP-----------------PERQTLLFSATMPEEISRLARQYMTDPKFV-------- 209
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ S +N+ A P+++ Y +HK++ L R +
Sbjct: 210 -----------------TVSKANITA--------PSIEQIYYEAPEKHKLEALCRILDTT 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ I F R + + V L+ARG A LHGDL + R+T +++F++GEV +LV +
Sbjct: 245 EITQGIVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLVATD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
++ARGLD+ V+N D+P D Y HR GRTGR GR G ++I
Sbjct: 305 VAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITI 349
>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 524
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 135/425 (31%), Positives = 212/425 (49%), Gaps = 67/425 (15%)
Query: 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166
+ N F LGL ++ + GF P+++Q +IP L D++ Q+ TG+GKT AY L
Sbjct: 1 MSDNQFATLGLKESIVRAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSL 60
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
PIL+K+ S G I+A+I+AP+REL +Q+ E+ +L +K + +
Sbjct: 61 PILTKM-------STNKG-------IKALILAPTRELAVQVKDEMNRL-SKYEKAEILAV 105
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + RQ ALRK +VVGTPGR+ ++ LH FLVLDE DE+L+ F +
Sbjct: 106 YGGDSIDRQIRALRKG-VDVVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNMGFID 164
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH-DPLLVQA 345
+ I+ H P+ ERQT++ SAT+P + + A+ + D LV
Sbjct: 165 DIESILSHT----------PE-------ERQTLLFSATMPDPIAKLAKRYMKPDAKLVSV 207
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
K S+L + +QS Y+ + +H+++ L
Sbjct: 208 KK-------------------------SSLTVSKIEQS-------YFMINN-KHRLEALC 234
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
R + + + I F R + + V +L+++G +HGD+ + R TTL KFK G +
Sbjct: 235 RLLDLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLN 294
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
+L+ +++ARG+DV V N DLP D Y HR GRTGR R GT S+ + ++
Sbjct: 295 LLIATDVAARGIDVDGVTHVFNYDLPQDVESYVHRIGRTGRANREGTAYSLVTPKDFSML 354
Query: 526 KKMQK 530
K++QK
Sbjct: 355 KQIQK 359
>gi|333923641|ref|YP_004497221.1| DEAD/DEAH box helicase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333749202|gb|AEF94309.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 532
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 201/405 (49%), Gaps = 65/405 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F L L +++ L GF PT +Q A+P +L HD++ Q+ TG+GKT A+ +P++++
Sbjct: 10 FGNLELDSCIVQGLVDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIPLVAR 69
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + +K ++A+I+ P+REL +Q+ EI K+ G + V + GG +
Sbjct: 70 L-------------NFRKRGVQAIIITPTRELAIQVGEEINKI-GRYRRARVLPIYGGQS 115
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ +LR+ +VVGTPGR+ + L +VLDE DE+L F + + I
Sbjct: 116 IERQIRSLRQGV-HVVVGTPGRLLDHLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEI 174
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ H ERQT++ SAT+P + R AR + DP V
Sbjct: 175 LRHTP-----------------PERQTLLFSATMPEEISRLARQYMTDPKFV-------- 209
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ S +N+ A P+++ Y +HK++ L R +
Sbjct: 210 -----------------TVSKANITA--------PSIEQIYYEAPEKHKLEALCRILDTT 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ I F R + + V L+ARG A LHGDL + R+T +++F++GEV +LV +
Sbjct: 245 EITQGIVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLVATD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
++ARGLD+ V+N D+P D Y HR GRTGR GR G ++I
Sbjct: 305 VAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITI 349
>gi|334340505|ref|YP_004545485.1| DEAD/DEAH box helicase [Desulfotomaculum ruminis DSM 2154]
gi|334091859|gb|AEG60199.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum ruminis DSM
2154]
Length = 532
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 202/410 (49%), Gaps = 65/410 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
+F +L L P +++ L GF PT +Q A+P +L HD++ Q+ TG+GKT A+ +P
Sbjct: 6 VTRAFGDLQLDPRVVDGLIDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIP 65
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
++ ++ +K ++ +I+ P+REL +Q+ EI K+ G + V +
Sbjct: 66 LIQRL-------------DFRKKGVQVIILTPTRELAIQVGEEITKI-GRYRRIRVLPIY 111
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + RQ ++LR+ +VVGTPGR+ + L VLDE DE+L F E
Sbjct: 112 GGQSIDRQIKSLRQGV-QVVVGTPGRLLDHLRRQTLKLDQITMAVLDEADEMLDMGFIED 170
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I+ H P RQT++ SAT+P + R AR + +P LV
Sbjct: 171 IEEILRHT----------PPV-------RQTLLFSATMPDEITRLARQYLTEPKLV---- 209
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ S +NL Q +Q YY + +HK++ L R
Sbjct: 210 ---------------------TVSKTNLTVPQIEQV-------YYEAPE-KHKLEALCRL 240
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ D I F R + D V L+ARG A LHGDL + R+T +++F++GEV +L
Sbjct: 241 LDITDIAQGIVFCRTKRGVDDLVSGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELL 300
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
V +++ARGLD+ V+N D+P D Y HR GRTGR GR G ++I
Sbjct: 301 VATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITII 350
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 216/423 (51%), Gaps = 68/423 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L +L+ L+ GF P+ +Q+ AIP++L+ DV+ Q+ TG+GKT A+ +PI+
Sbjct: 7 TFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIVE 66
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ P G++ ++A+++ P+REL +Q+ EI K +G + + GG
Sbjct: 67 RLVP------------GQRA-VQALVLTPTRELAIQVAEEITK-IGRHARVKTIAIYGGQ 112
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ RQ +LR +V+GTPGRI + L R +VLDE DE+L F E + +
Sbjct: 113 SIERQIRSLRFGVD-VVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEK 171
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+++ AERQT++ SAT+P + R A + DP+ +
Sbjct: 172 ILQNTP-----------------AERQTLLFSATMPPEIRRLAGRYMRDPITI------- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ P L+ P Q DQ Y+C + K + L R +
Sbjct: 208 -----SVTPQQLTVP-------------QIDQ--------YFCEVRPSFKTEALTRILDI 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + I F + + + V L+ARG +A +HGD+ + R+ + +FK G + +LV
Sbjct: 242 ENVERGICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLVAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVVKK 527
+++ARGLD+++ V N D+P D Y HR GRTGR GR GT +++ E P++ ++++
Sbjct: 302 DVAARGLDISDVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLIER 361
Query: 528 MQK 530
+ K
Sbjct: 362 VIK 364
>gi|150392377|ref|YP_001322426.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149952239|gb|ABR50767.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 387
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 216/435 (49%), Gaps = 63/435 (14%)
Query: 113 LELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172
L L + P L E R GF PT +Q AIP IL+ D++ +S TG+GKTLAYL+PIL ++
Sbjct: 13 LLLKMKPFLQETWNRVGFTAPTPIQEEAIPLILEGKDLIAESPTGTGKTLAYLIPILHRI 72
Query: 173 GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANR 232
P + ++AVI+APS EL MQI + I+K ++ + + L+GGAN
Sbjct: 73 DP-------------ESKAVQAVILAPSHELAMQIHQTIEKWTKDNNISS-EPLIGGANI 118
Query: 233 SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
RQ E L+K +P I+V T GR+ E+ K+ H + +V+DE D L++ E + I+
Sbjct: 119 KRQIENLKK-RPQIIVATTGRLLEVIKLKKIKMHEVKTIVVDEFDILIAEEHAENLKHII 177
Query: 293 EHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLE 352
K+ L ERQ + SAT+ + + +P ++Q +
Sbjct: 178 --------------KTTL---KERQIVCFSATISENTEQIGMELMKEPKIIQIQ------ 214
Query: 353 SMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALD 412
G SS S L ++H Y + + + K + LR+ + + +
Sbjct: 215 --------------KGQSSLSTL----------SNIQHTYIICEHREKFEVLRKIIRSGN 250
Query: 413 AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472
+ ++ F N+ R++++ KL G+ L G K R L F+ G+ +LV ++
Sbjct: 251 VKALV-FTNDVRKIEEIQVKLSYNGIDLGVLMGGSNKTQRKEALNGFRMGKFPLLVATDV 309
Query: 473 SARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
+ARGLD+ V+N D+P + Y HR+GRTGR+G GTVVSI + E + +K+ +L
Sbjct: 310 AARGLDIEGLTHVINWDVPLTADQYTHRSGRTGRMGALGTVVSIVNKREESMFRKITNEL 369
Query: 533 AVPIQACEFTEGRLV 547
+ +G ++
Sbjct: 370 EISATEKMMYKGEMI 384
>gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
Length = 509
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 204/414 (49%), Gaps = 68/414 (16%)
Query: 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166
+ SF+ELG+ + LE GF PT VQ +IP IL D+V Q+ TG+GKT A+ L
Sbjct: 37 LMSQSFVELGISEARAQHLESIGFTEPTPVQIQSIPQILSGRDIVGQAQTGTGKTAAFSL 96
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
PIL ++ + D++A+I+ P+REL MQ+ I+K+ S+++++ L
Sbjct: 97 PILEQI-------------DHQAKDVQALILTPTRELAMQVKDAIRKM---SNERSLYVL 140
Query: 227 V--GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
GG + RQ + L + IVVGTPGR+ ++ + GKL HG ++LVLDE DE+LS F
Sbjct: 141 TVYGGQSIERQVQRLERG-VHIVVGTPGRVLDLLSRGKLKLHGIKWLVLDEADEMLSMGF 199
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+ + +I+E A +RQT SAT+ S+ + R + + P+ V+
Sbjct: 200 IQDVEKILE-----------------ASSKDRQTAFFSATIEPSIWKLVRKFLNSPVTVK 242
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
+ P T P +S + Y V + K L
Sbjct: 243 VEQ-------PKTTPKQIS-------------------------QEVYTVPRGWTKARAL 270
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+ + D ++ I F+ + + L+ G E HG+L + R L +F+ +V
Sbjct: 271 QPILELEDPESAIVFVRTKQAAAELTSCLQGAGHSVDEYHGNLNQSQRERLLVRFRKRQV 330
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
R +V +++ARGLDV V+N DLP ++ Y HR GRTGR GR G +++ +
Sbjct: 331 RWIVATDIAARGLDVDHLTHVINYDLPDNAESYVHRIGRTGRAGREGKAITLLQ 384
>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
linens BL2]
Length = 606
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 204/423 (48%), Gaps = 70/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELGL PL+L+ ++ +G+ PT +Q+ IP++++ DV+ + TG+GKT A+ LP LS
Sbjct: 15 FSELGLHPLVLQAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTGTGKTAAFALPALSD 74
Query: 172 VGPLKDKSSNGNGESGKKTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ E+G+ D A+++ P+REL +Q+ D +V + GG
Sbjct: 75 L-----------AEAGRANDGPFALVLTPTRELAIQVAEAFTSYATNLDDFSVLPIYGGQ 123
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q L++ +VVGTPGR+ + G L R L+LDE DE+L F E +
Sbjct: 124 AYGPQLSGLKRGA-QVVVGTPGRVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDIEE 182
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I G RQ + SAT+P S+ R + ++P V+
Sbjct: 183 IFSQSG-----------------DSRQVALFSATMPTSIHRLTGKYLNNPKEVRV----- 220
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S S + SN++ + Y + + HK+D L R +
Sbjct: 221 ---------------ASKSQTGSNIRQR-------------YHMVQHSHKLDALTRILEV 252
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + +I F+ + ++ KL ARG KA+ ++GD+ + AR T+ +NG+V +LV
Sbjct: 253 EEYEGIIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVAT 312
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV LVVN D+P D+ Y HR GRTGR GR G + +FV + Q+
Sbjct: 313 DVAARGLDVERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAI-------LFVTPREQR 365
Query: 531 QLA 533
L
Sbjct: 366 LLG 368
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 198/415 (47%), Gaps = 69/415 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F E L P +LE + GF T +QS +IP L+ D++ Q+ TG+GKT A+ +P++
Sbjct: 2 TTFAEFNLEPKVLEAITELGFEEATPIQSQSIPLALQGRDMIGQAQTGTGKTAAFGIPLI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--V 227
SK+ DK I A+I+AP+REL +Q+ EI+KL S K ++ L
Sbjct: 62 SKISRNDDK-------------IRALIMAPTRELAIQVAEEIEKL---SRFKGLRTLPIY 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + RQ AL+K KP I++GTPGR+ + + +VLDE DE+L F E
Sbjct: 106 GGQDIVRQIRALKK-KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMED 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I++ V ERQT++ SAT+P ++ R A + +P V +
Sbjct: 165 IQSILKQVP-----------------DERQTMLFSATMPPNIKRLAEQFLKNPEHV---S 204
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
VIP Q P + Y + K + L R
Sbjct: 205 VIP------------------------------KQVSAPLIDQAYIEVPERQKFEALSRL 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F R++ + L+ RG A LHGDL + R ++KF++G + VL
Sbjct: 235 IDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
V +++ARGLDV+ VVN DLP D Y HR GRTGR G+ G S E+
Sbjct: 295 VATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREI 349
>gi|445494630|ref|ZP_21461674.1| ATP-dependent RNA helicase [Janthinobacterium sp. HH01]
gi|444790791|gb|ELX12338.1| ATP-dependent RNA helicase [Janthinobacterium sp. HH01]
Length = 743
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 215/432 (49%), Gaps = 68/432 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L L++ L+ G+ P+ +Q+A IPS+L N DV+ Q+ TG+GKT A+ LPILS+
Sbjct: 12 FTDLNLSAPLIKVLKEVGYESPSPIQAATIPSLLDNQDVLGQAQTGTGKTAAFALPILSR 71
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ K+T +A+++AP+REL +Q+ + V + GG +
Sbjct: 72 L-------------DIKQTTPQALVLAPTRELAIQVAEAFQTYATHIPGFHVLPIYGGQS 118
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q ALR+ +VVGTPGR+ + G L + LVLDE DE+L F + + RI
Sbjct: 119 YGPQLSALRRGV-HVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERI 177
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAKNVI 349
++ P+S RQT + SAT+P ++ R A ++ +P + V AK
Sbjct: 178 LQET----------PES-------RQTALFSATMPSAIRRIANTYLRNPKEITVAAK--- 217
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ +N N++ + Y+ V+ + HK+D L R +
Sbjct: 218 -------------------TGTNENIR------------QRYWLVSGM-HKLDALTRILE 245
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A + +I F ++ KL+ARG AA ++GD+ + R T+++ K+G++ +LV
Sbjct: 246 AENFDGMIIFSRTKLGTEELAQKLQARGFSAAAINGDIQQAQRERTIQQLKDGKIDILVA 305
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV VVN D+P D Y HR GRTGR GR G + E ++K ++
Sbjct: 306 TDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREKNLLKSIE 365
Query: 530 KQLAVPIQACEF 541
+ PI E
Sbjct: 366 RATRQPIGMLEL 377
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/418 (32%), Positives = 198/418 (47%), Gaps = 66/418 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F E+ L LL +E GF T +Q+ IP L+ DV Q+ TG+GKT A+ LP+L K
Sbjct: 3 FNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLLEK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V E+G ++A+I+ P+REL +Q E+ +L G + GGA+
Sbjct: 63 VH-----------ETG---GVQALIIEPTRELAVQTGEELYRL-GKFKGIHTTTVYGGAS 107
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q + L+KN P +V+GTPGRI ++ G L + LVLDE DE+L F E + I
Sbjct: 108 IGHQIKLLKKN-PPVVIGTPGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESI 166
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ RE + ERQT++ SATVP + R A ++ +DP V K
Sbjct: 167 I-----------RE------LPTERQTLLFSATVPQEIKRIADNFMNDPATVHVK----- 204
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
KQ L + YY K K D L R +
Sbjct: 205 -------------------------TKQMTADL---IDQYYSRCKDYEKFDLLTRFIDVQ 236
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + I F R++ + L RG A +HGDL + R L+ FKNG++ +LV +
Sbjct: 237 NPELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDILVATD 296
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++ARGLD++ V N D+P D Y HR GRTGR G+ G V+ E+ ++ ++
Sbjct: 297 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSNEMSYLRTIE 354
>gi|359778006|ref|ZP_09281280.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
gi|359304860|dbj|GAB15109.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
Length = 697
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 217/452 (48%), Gaps = 62/452 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ +L L+ G+ P+ +Q+A IP +L+ DVV + TG+GKT A+ +P LS+
Sbjct: 55 FTDLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSR 114
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ L D NG S K +A+++AP+REL +Q+ D V + GG+
Sbjct: 115 LAELHDL----NGPSRK---TQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSA 167
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q LR+ +VVGTPGR+ + A G L ++LVLDE DE+L F E + +I
Sbjct: 168 YGPQLAGLRRG-AQVVVGTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFAEDVEQI 226
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ P+S RQ + SAT+P + R ++ + ++P + K
Sbjct: 227 FQQT----------PES-------RQVALFSATMPSQIRRMSKQYLNNPAEISVK----- 264
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S +S+ +N +K Y HK+D + R +
Sbjct: 265 ---------------SKTSTGTN-------------IKQRYLQVMGPHKLDAMTRILEVE 296
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ VIAF+ +D KL++RG +AA ++GD+ + R T+ K G + +LV +
Sbjct: 297 EFDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATD 356
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E ++++ ++K
Sbjct: 357 VAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRAGDAILFMTPREKYLLRAIEKA 416
Query: 532 LAVPIQACEF----TEGRLVIGKEEEKTLEAV 559
++ T L +GK E+ E +
Sbjct: 417 TRQTVEQMHLPTAETVNSLRLGKFAERITETL 448
>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 498
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 212/430 (49%), Gaps = 69/430 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ + LE+ GF PT +Q +IP + DV+ Q+ TG+GKT A+ +P++ K
Sbjct: 4 FRDLGISEPTINALEKLGFTEPTPIQMDSIPHTMAGRDVLGQAQTGTGKTGAFGIPLIEK 63
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGG 229
V G G I+++I+AP+REL +Q+ ++K S + +Q + GG
Sbjct: 64 V----------KGREG----IQSLILAPTRELAVQVAEQLKAF---SRGQGIQVTTVFGG 106
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
RQ L+K KP IVVGTPGR+ + L T L+LDE DE+++ F + M
Sbjct: 107 MPIDRQIRELKK-KPQIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMR 165
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I++ + P+E RQT++ SAT+P ++ + + +P++V+
Sbjct: 166 FIMDKL-------PKE---------NRQTMLFSATMPKAIQELVQKFMKNPVIVKT---- 205
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
M+ + S+ P+++ +Y + K K DT +
Sbjct: 206 ----------------MTNNDSD-------------PSIEEFYTIVKELEKFDTFTNFLD 236
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ I F R++ + L ++G +A LHGD+ + R LKKFKN ++ +LV
Sbjct: 237 VHRPELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVA 296
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD++ V N D+P D Y HR GRTGR G+ G +S E+ +++++
Sbjct: 297 TDVAARGLDISGVTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQIE 356
Query: 530 KQLAVPIQAC 539
K +QA
Sbjct: 357 KAKNRQMQAL 366
>gi|377809005|ref|YP_005004226.1| DEAD/DEAH box helicase [Pediococcus claussenii ATCC BAA-344]
gi|361055746|gb|AEV94550.1| DEAD/DEAH box helicase family protein [Pediococcus claussenii ATCC
BAA-344]
Length = 518
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 136/419 (32%), Positives = 202/419 (48%), Gaps = 65/419 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELGL +L+ + G+ PT +Q+ IP +L D++ Q+ TG+GKT A+ LPIL
Sbjct: 3 FTELGLDDDVLKAVIDNGYEEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPILQH 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +N N I+A+IV+P+REL Q EI KL G K VQ + GGA+
Sbjct: 63 V-----DLNNPN--------IQAIIVSPTRELAAQTQAEIFKL-GKYKKAKVQVVYGGAD 108
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ +L K+ P IVVGTPGR+ + + LVLDE D++L F + +I
Sbjct: 109 IRRQINSL-KSHPQIVVGTPGRLLDHIGRKTIRLDHVNTLVLDEADDMLDMGFLPDIEQI 167
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+E + P +RQT++ SAT+P ++ + + HDP V K+
Sbjct: 168 IE----------KTPN-------DRQTLLFSATMPQAIKKIGVKFMHDPKQVTVKS---- 206
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L A DQ YY +K K D L R +
Sbjct: 207 ---------------------KELTADLVDQ--------YYVRSKEFEKFDILTRVLDVQ 237
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + F R++ + L ARG AA +HGDL + R + L +F+NG++ +LV +
Sbjct: 238 APKLAVIFGRTKRRVDEVSKGLVARGYNAAGIHGDLTQQRRMSILHQFRNGDLDILVATD 297
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARGLD+ V N D+ D Y HR GRTGR G GT V+ E+ ++ +++
Sbjct: 298 VAARGLDITGVTHVYNYDITQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDIER 356
>gi|383316474|ref|YP_005377316.1| DNA/RNA helicase [Frateuria aurantia DSM 6220]
gi|379043578|gb|AFC85634.1| DNA/RNA helicase, superfamily II [Frateuria aurantia DSM 6220]
Length = 603
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 220/439 (50%), Gaps = 65/439 (14%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
ES+P A F L L P +L+ L G+ P+ +QSA IP +L+ DV+ Q+ TG+GKT
Sbjct: 7 ESSP-APAGFSALPLRPEILQALREVGYESPSPIQSATIPPLLEGRDVLGQAQTGTGKTA 65
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
A+ LP+LS++ ++ SN +A+++AP+REL +Q+ ++
Sbjct: 66 AFALPVLSRI----ERDSNKP---------QALVLAPTRELAIQVAEAFQRYAAHMPGFH 112
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
+ + GG + Q +ALR+ ++VGTPGR+ + G L +FLVLDE DE+L
Sbjct: 113 ILPIYGGQSYGPQLQALRRGV-QVIVGTPGRVIDHLTRGSLDLSELKFLVLDEADEMLRM 171
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + + +++E A P RQ + SAT+P + + A+ P+
Sbjct: 172 GFIDDVEKVLE-------ATP----------PTRQVALFSATMPSQIRKIAQQHLKTPVE 214
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V K + +S+N+N++ + Y+ V+ L HK+D
Sbjct: 215 VTIK--------------------AATSTNTNIRQR------------YWWVSGL-HKLD 241
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
+ R + A +I F + ++ +L+ARG AA ++GD+ + R +++ K+G
Sbjct: 242 AMTRILEAESFDAMIVFARTKQATEELSERLQARGFAAAAINGDIAQPQRERVIQQLKDG 301
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
++ +LV +++ARGLDV V+N D+P D+ Y HR GRTGR GR G + E
Sbjct: 302 KLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREK 361
Query: 523 FVVKKMQKQLAVPIQACEF 541
+++ +++ PI+ +
Sbjct: 362 GMLRAIERATRQPIEEMKL 380
>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
Length = 556
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 203/419 (48%), Gaps = 63/419 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL L P + + G+ T +QSA IP ++ DV+ QS TG+GKT A+ +PI+
Sbjct: 3 FNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPIIEM 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ E + +A+I++P+REL MQ+ EI+K + + GG
Sbjct: 63 L------------EVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQ 110
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
S+Q L+K IVVGTPGR+ + L CR LVLDE DE+L+ FRE + +
Sbjct: 111 ISKQILELKKGAD-IVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETV 169
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+E A+ +RQT++ SAT+P K ++ +
Sbjct: 170 IE-----------------ALPQQRQTVLFSATMP-------------------KPILEI 193
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S T P ++ P + ++ P ++ Y V + K + L + +
Sbjct: 194 TSQYQTNPVHIKTPQTQINT--------------PKIEQVYYVCPKEAKKEILMQLISMQ 239
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + F N + + + L ++G AA LHGD+ + R+ + FK G++ +LV +
Sbjct: 240 NPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATD 299
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARG+DV D+V N DLP +S +Y HR GRTGR G+ G V++ + + ++ +++
Sbjct: 300 VAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLER 358
>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 607
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 205/429 (47%), Gaps = 66/429 (15%)
Query: 103 ESAPFAAN-SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKT 161
E+AP F ELGLP LL ++ GF PT +Q+AAIP++L D+ + TG+GKT
Sbjct: 19 ETAPVPTGPGFDELGLPGTLLRAVKDLGFATPTAIQAAAIPALLAGRDITGVAQTGTGKT 78
Query: 162 LAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKK 221
A+ LP+L+ + P ++A+++ P+REL +Q+ I
Sbjct: 79 AAFGLPLLAAIDP--------------TPGVQALVLCPTRELAVQVADAISSFATALPDV 124
Query: 222 AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLS 281
+V + GG Q ALR +VVGTPGRI + G L G RFLVLDE DE+L
Sbjct: 125 SVIAIYGGTGFLPQRAALRAGA-QVVVGTPGRIIDHLERGTLDLSGLRFLVLDEADEMLR 183
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
F E + RI+ P S RQ + SAT+P ++ RS
Sbjct: 184 MGFAEDVDRILSDA----------PNS-------RQAALFSATMPPAI----RS------ 216
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
+ AK++ T P +++ S+ +S ++ Y V + KV
Sbjct: 217 -IAAKHM--------TNPVDIAVSRQSSTVDS--------------VRQIYAVVPFRDKV 253
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
D L R + + I F+ L ARG+ AA ++GD+ + R +++ ++
Sbjct: 254 DALTRFLQVTEGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRD 313
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
G + VLV +++ARGLDV DLVVN D P + Y HR GRTGR GR GT ++ E
Sbjct: 314 GRLDVLVATDVAARGLDVDRIDLVVNFDAPGEPEAYVHRIGRTGRAGRTGTALTFFTPRE 373
Query: 522 VFVVKKMQK 530
+ ++ +++
Sbjct: 374 MGRLRAIER 382
>gi|375290654|ref|YP_005125194.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 241]
gi|376245487|ref|YP_005135726.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC01]
gi|371580325|gb|AEX43992.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 241]
gi|372108117|gb|AEX74178.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC01]
Length = 679
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 122/399 (30%), Positives = 195/399 (48%), Gaps = 64/399 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ F LGLP +L+ + + GF P+ +Q+ IP +++ HDV+ + TG+GKT A+ LPIL
Sbjct: 67 DGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPIL 126
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ KK +A+I+AP+REL +Q+ + V + GG
Sbjct: 127 SRI-------------DVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 174 QAYGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 232
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P+ ++Q + SAT+P + R +R + DP +Q K
Sbjct: 233 RILEDT----------PE-------DKQVALFSATMPNGIRRLSRDYMKDPHEIQVK--- 272
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y ++K+D L R +
Sbjct: 273 -----------------SQTRTNTNITQR-------------YLNVAHRNKLDALTRILE 302
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG 508
+++ARGLDV V N D+P D+ Y HR GR GR G
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRAGRSG 401
>gi|395645907|ref|ZP_10433767.1| DEAD/DEAH box helicase domain protein [Methanofollis liminatans DSM
4140]
gi|395442647|gb|EJG07404.1| DEAD/DEAH box helicase domain protein [Methanofollis liminatans DSM
4140]
Length = 530
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 123/425 (28%), Positives = 200/425 (47%), Gaps = 64/425 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + + P +L +E GF PT +Q AIP ILK D+ Q+ TG+GKT A+ +P +
Sbjct: 7 FSDFPISPEILRAIEDMGFEEPTPIQVLAIPPILKGQDITGQAQTGTGKTAAFGIPAIEV 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V P N S + ++++P+REL +Q E +L + +V + GG
Sbjct: 67 VDP--------NSHS-----TQVIVLSPTRELAIQTAEEFGRLGKYRGRISVLPVYGGQP 113
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ ALR+ IVVGTPGR+ + G L R ++LDE D++L F E + +I
Sbjct: 114 IERQFRALRQGV-QIVVGTPGRVLDHLDRGTLSLSDVRMVILDEADQMLDMGFLEDIEKI 172
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ A RQT++ SAT+P ++ + + +P+ ++
Sbjct: 173 LSDT-----------------PAGRQTVLFSATLPKPILEISGRFQKNPVFIKV------ 209
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ L Q +QS Y + K++ L R +
Sbjct: 210 -------------------PHKQLTVPQIEQS--------YLEVRRGDKLEILSRILDIY 242
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D + F N + + +L+ARG A LHGD+ ++ R + KF++G + VL+ +
Sbjct: 243 DPALALVFCNTKMAVDEVTSQLQARGYFAEGLHGDMKQVQRDRVMAKFRSGNIDVLIATD 302
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARG+DV + D V+N D+P D +Y HR GRT R GR G V+ E++ ++ +QK
Sbjct: 303 VAARGIDVDDVDTVINYDVPQDVEYYVHRIGRTARAGRSGRAVTFVGPKEIYKLRTIQKY 362
Query: 532 LAVPI 536
+ I
Sbjct: 363 AKITI 367
>gi|429767290|ref|ZP_19299498.1| DEAD/DEAH box helicase [Clostridium celatum DSM 1785]
gi|429181345|gb|EKY22516.1| DEAD/DEAH box helicase [Clostridium celatum DSM 1785]
Length = 390
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 119/439 (27%), Positives = 216/439 (49%), Gaps = 66/439 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L ++E L+ + PTE+Q+ IP L+N D++ +S+TGSGKTLAY+ PI
Sbjct: 4 TFNELNLNSNIIEGLKLQNITTPTEIQTLTIPKALENMDIIAESHTGSGKTLAYICPIFE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ K +++A+I+AP+ EL MQI +I KLL + + L +G
Sbjct: 64 KINT-------------DKKEMQAIILAPTHELVMQIDAQI-KLLAKNSNINISSLTIMG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
+N +Q + +++ KP I+VG+ GR+ ++ K+ H + +V+DE D LL+ N +
Sbjct: 110 ESNIEKQIKKIKEVKPHIIVGSAGRVLDLIKKKKITAHTIKTIVMDEADSLLAKNKATII 169
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I++ R +RQ + SA++ + + A+S + +V++
Sbjct: 170 KDIIKATMR-----------------DRQLMFFSASINATTLDIAKSLVKEVEIVKS--- 209
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ L P + H + + + +TLR+ +
Sbjct: 210 ------------------------------EEKSVLNPNISHMFITCDFRDRFETLRKLL 239
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A I F+NN+ +L++ KL+ +K+ ++G+ K R +++ F+NG+ VLV
Sbjct: 240 AAETPTRAIVFVNNSTELQNINEKLDYHKVKSTAIYGNASKEQRQRSIEAFRNGKFNVLV 299
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
++++SARGLD+ E ++++D P + Y HRAGRT R G+ + I + ++ +K
Sbjct: 300 SSDVSARGLDIPEITHIISMDFPANPDEYLHRAGRTARGTLSGSSICIATKKDLNAIKTY 359
Query: 529 QKQLAVPIQACEFTEGRLV 547
QK + + G L+
Sbjct: 360 QKAFKIKFKEMNLYGGNLI 378
>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
Length = 615
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 206/428 (48%), Gaps = 65/428 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGL +LE ++ G+ P+ +Q+A IP++L+ DVV + TG+GKT A+ LP+LS
Sbjct: 28 TFDSLGLSAGVLEAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFALPVLS 87
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ ++ +A+++AP+REL +Q+ ++ D + + GG
Sbjct: 88 NLDVYQNAP-------------QALVLAPTRELALQVCEAFERYASNLDGVRILPVYGGQ 134
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q ALR+ +VVGTPGRI + G L RFLVLDE DE+L+ F E +
Sbjct: 135 GYGPQLTALRRGV-HVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVET 193
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ P+ ++Q + SAT+P + R ++ + D + K
Sbjct: 194 ILAET----------PE-------DKQVALFSATMPAQIRRLSKKYLRDAEEISVK---- 232
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + +N+N+ + Y + KVD L R +
Sbjct: 233 ----------------AKTQTNTNITQR-------------YLMVSYPQKVDALTRILEV 263
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + +I F + + KL ARG A ++GD+ + R T+ + K+G + +LV
Sbjct: 264 ENFEGMIVFTRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSLDILVAT 323
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN DLPTD Y HR GRTGR GR G +S E ++++ ++K
Sbjct: 324 DVAARGLDVERISHVVNYDLPTDVEAYVHRIGRTGRAGRTGDAISFVTPRERWLLRAIEK 383
Query: 531 QL-AVPIQ 537
A P+Q
Sbjct: 384 HTKAQPVQ 391
>gi|410456811|ref|ZP_11310665.1| DEAD/DEAH box helicase [Bacillus bataviensis LMG 21833]
gi|409927363|gb|EKN64500.1| DEAD/DEAH box helicase [Bacillus bataviensis LMG 21833]
Length = 450
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 205/430 (47%), Gaps = 68/430 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+ FL LG+ ++ +L G PT +Q AIP ++ +D++ Q+ TG+GKT A++LPIL
Sbjct: 2 SDFLSLGISETVVNQLRGYGVAKPTPIQEQAIPFVMNGNDIIAQAQTGTGKTFAFILPIL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
K+ DK + I+A+IV P+REL +QI EI+KL+ AV GG
Sbjct: 62 EKI----DKDA---------AHIQALIVTPTRELALQITAEIEKLIADLPGVAVLAAYGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ +Q + L++N P IVVGTPGR+ + + FLVLDE D++L F +
Sbjct: 109 QDVDKQLKKLKRN-PQIVVGTPGRLLDHIRRETVRLSEISFLVLDEADQMLHIGFLGEVE 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ RQT++ SAT+P + + A DP +Q +
Sbjct: 168 DIIRETP-----------------VTRQTMLFSATMPPEIRKLAAKHMRDPEYIQIEKT- 209
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQAD--QSLPPALKHYYCVTKLQHKVDTLRRC 407
GP M+ +++ Q D ++ P L +C TK RR
Sbjct: 210 -------QGPAENVKQMAIHTTDRAKQETLIDLIETHRPFLAVIFCRTK--------RRV 254
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
DA L+A G + ELHGDL + R +K+F++ E+++L
Sbjct: 255 SKLYDA-------------------LKAHGFPSDELHGDLSQAKREQVMKRFRDAEIQLL 295
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLDV V N D+P DS Y HR GRTGR G G +++ + ++
Sbjct: 296 VATDVAARGLDVEGVTHVFNYDIPEDSESYIHRIGRTGRAGMTGLAITLYAAKDKSALEL 355
Query: 528 MQKQLAVPIQ 537
++K L + IQ
Sbjct: 356 IEKDLKITIQ 365
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 199/415 (47%), Gaps = 69/415 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F E L P +++ + GF T +Q+ +IP L+ D++ Q+ TG+GKT A+ +P++
Sbjct: 2 TTFAEFDLEPKVIQAITELGFEEATPIQAISIPIALQGKDMIGQAQTGTGKTAAFGIPLI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--V 227
SK+ +K I A+I+AP+REL +Q+ EI+KL S K ++ L
Sbjct: 62 SKISKNDEK-------------IRALIMAPTRELAIQVAEEIEKL---SRFKGLRTLPIY 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + RQ AL+K KP I++GTPGR+ + + +VLDE DE+L F E
Sbjct: 106 GGQDIVRQIRALKK-KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMED 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I++ V ERQT++ SAT+P ++ R A + DP V +
Sbjct: 165 IQSILKQVP-----------------DERQTMLFSATMPPNIKRLAEQFLKDPEHV---S 204
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
VIP Q P ++ Y + K + L R
Sbjct: 205 VIP------------------------------KQVSAPLIEQAYIEVPERQKFEALSRL 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F R++ + L+ RG A LHGDL + R ++KF++G + VL
Sbjct: 235 IDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
V +++ARGLDV+ VVN DLP D Y HR GRTGR G+ G S E+
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREI 349
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 198/415 (47%), Gaps = 69/415 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F E L P +++ + GF T +QS +IP L+ D++ Q+ TG+GKT A+ +P++
Sbjct: 2 TTFAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--V 227
+K+ +K I A+I+AP+REL +Q+ EI+KL S K ++ L
Sbjct: 62 NKISKNDEK-------------IRALIMAPTRELAIQVAEEIEKL---SRFKGLRTLPIY 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + RQ AL+K KP I++GTPGR+ + + +VLDE DE+L F E
Sbjct: 106 GGQDIVRQIRALKK-KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMED 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I++ V ERQT++ SAT+P ++ R A + DP V +
Sbjct: 165 IQSILKQVP-----------------DERQTMLFSATMPPNIKRLAEQFLKDPEHV---S 204
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
VIP Q P + Y + K + L R
Sbjct: 205 VIP------------------------------KQVSAPLIDQAYIEVPERQKFEALSRL 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F R++ + L+ RG A LHGDL + R ++KF++G + VL
Sbjct: 235 IDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
V +++ARGLDV+ VVN DLP D Y HR GRTGR G+ G S E+
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREI 349
>gi|392957192|ref|ZP_10322716.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
gi|391876599|gb|EIT85195.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
Length = 431
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 205/438 (46%), Gaps = 68/438 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F L + P L+E L +GF PT++Q +P IL +D++ QS TGSGKT+A+LLPIL
Sbjct: 5 TTFDRLNIQPFLIEALVEQGFKKPTDIQERVVPGILNGYDIIGQSQTGSGKTMAFLLPIL 64
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA---VQQL 226
+K+ K +I+AVI AP+REL QI +E +KL ++A + +
Sbjct: 65 NKI-------------DATKNEIQAVITAPTRELAQQIFQEYEKLAAYFPEEAPITAKTV 111
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
VGG +R R + L KN P +++GTPGRI ++ L+ + LV+DE D++L F E
Sbjct: 112 VGGTDRKRMADRL-KNPPHLIIGTPGRINDLVKNEGLNIYSATTLVVDEADQMLDMGFIE 170
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ ++ A M Q ++ SAT+P + + + + P V
Sbjct: 171 DVDQL-----------------ASRMAETIQMLVFSATIPEKLQPFLKKYMNQPRHV--- 210
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+V P +Q+ +KH K + K L
Sbjct: 211 HVSP------------------------------EQTTAKEIKHVLIPLKHKDKTKLLIE 240
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
A + + F+N + + + G+ LHGD+ R + +K+ + E +
Sbjct: 241 VAKAYNPYLCLIFVNTKKMADEVSDAMSTAGLNVQRLHGDIQPRERKSIMKRIQKAEYQY 300
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
+V +L+ARG+D+ ++N +LP D +Y HR GRTGR G G +I E + ++
Sbjct: 301 VVATDLAARGIDIKGISHIINYELPKDLDYYIHRTGRTGRAGMTGIAATIIEPSDQLALQ 360
Query: 527 KMQKQLAVPIQACEFTEG 544
K+Q Q +P E+ G
Sbjct: 361 KLQ-QRKIPFVQEEWRNG 377
>gi|421861510|ref|ZP_16293512.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410828936|dbj|GAC43949.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 517
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 204/414 (49%), Gaps = 69/414 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F+ELGL P LL+ + GF T +Q AIP + D++ Q+ TG+GKT A+ +P++S
Sbjct: 6 TFVELGLEPKLLQAITELGFEEATPIQEIAIPVAMMGRDLIGQAQTGTGKTAAFGIPLIS 65
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ P +++ + A+++ P+REL +Q+ EI KL + K V+ L G
Sbjct: 66 KIDPSEER-------------VVALVMTPTRELAIQVAEEIGKL---TRFKGVRSLPIYG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ AL+K+ P I++GTPGR+ + + + + +VLDE DE+L F E +
Sbjct: 110 GQDIGRQIRALKKH-PQIIIGTPGRLLDHINRKTIRLNDVQTVVLDEADEMLDMGFMEDI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ V P+ ERQT++ SAT+P ++ + A + DP V +V
Sbjct: 169 TSILSLV----------PE-------ERQTMLFSATMPPNIQKLANQFLRDPEHV---SV 208
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
IP Q P ++ Y + K D L R +
Sbjct: 209 IP------------------------------KQVSAPLIEQAYIEVPERVKFDALSRLL 238
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F R++ + L+ RG A LHGDL + R ++KF++G + VLV
Sbjct: 239 DMESPELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLV 298
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARGLDV+ V+N DLP D Y HR GRTGR G+ G+ S E+
Sbjct: 299 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTPREI 352
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 199/415 (47%), Gaps = 69/415 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F E L P +++ + GF T +Q+ +IP L+ D++ Q+ TG+GKT A+ +P++
Sbjct: 2 TTFAEFDLEPKVIQAITELGFEEATPIQAKSIPIALQGKDMIGQAQTGTGKTAAFGIPLI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--V 227
SK+ +K I A+I+AP+REL +Q+ EI+KL S K ++ L
Sbjct: 62 SKIARNDEK-------------IRALIMAPTRELAIQVAEEIEKL---SRFKGLRTLPIY 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + RQ AL+K KP I++GTPGR+ + + +VLDE DE+L F E
Sbjct: 106 GGQDIVRQIRALKK-KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMED 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I++ V ERQT++ SAT+P ++ R A + DP V +
Sbjct: 165 IQSILKQVP-----------------DERQTMLFSATMPPNIKRLAEQFLKDPEHV---S 204
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
VIP Q P ++ Y + K + L R
Sbjct: 205 VIP------------------------------KQVSAPLIEQAYIEVPERQKFEALSRL 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F R++ + L+ RG A LHGDL + R ++KF++G + VL
Sbjct: 235 IDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
V +++ARGLDV+ VVN DLP D Y HR GRTGR G+ G S E+
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREI 349
>gi|410028951|ref|ZP_11278787.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 570
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 212/427 (49%), Gaps = 67/427 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ +L+ +E G+ P+ +Q+ +IP +L+ DV+ Q+ TG+GKT ++ +PI+
Sbjct: 7 FSDLGISAEILKAVEDMGYTHPSTIQAQSIPFLLEGKDVIGQAQTGTGKTASFAIPIIDM 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V D S N +A+++ P+REL +Q+ EI KL + + GG +
Sbjct: 67 V----DASFNKP---------QALVLCPTRELAVQVEGEIVKLSKYKRGISSTCIYGGES 113
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ ++L+K IVVGTPGRI + G L R +VLDE DE+L FRE + I
Sbjct: 114 IDRQIKSLKKG-VQIVVGTPGRIMDHMDRGTLKLDHVRIIVLDEADEMLDMGFREDIENI 172
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA-KNVIP 350
+ P+ ERQT+ SAT+P ++ + + +P +V+ + +
Sbjct: 173 LSDC----------PE-------ERQTVFFSATMPKPIMDLTKKFQDNPEIVKVLRKELT 215
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+E++ Q + PAL K++ + R ++
Sbjct: 216 VENIS-----------------------QVYYEVKPAL-----------KLELMSRLINL 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
Q + F N R + +L ARG+ A LHGDL + R+ + KF+ G V VLV
Sbjct: 242 NQFQLSVVFCNTKRVTDEVTEELIARGITAEALHGDLSQAQRTKVMNKFRKGHVSVLVAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-ICEEPEVFVVKKMQ 529
+++ARG+DV + V N DLP D +Y HR GRTGR G+ GT +S + ++F +K ++
Sbjct: 302 DVAARGIDVDNVEAVFNFDLPLDEENYVHRIGRTGRAGKSGTAISFVTGRKDMFRIKDLE 361
Query: 530 KQLAVPI 536
K + I
Sbjct: 362 KFIKTSI 368
>gi|365824887|ref|ZP_09366847.1| hypothetical protein HMPREF0045_00483 [Actinomyces graevenitzii
C83]
gi|365259075|gb|EHM89070.1| hypothetical protein HMPREF0045_00483 [Actinomyces graevenitzii
C83]
Length = 779
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 208/420 (49%), Gaps = 64/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGLP LL + GF PT++Q AIP +L+ DVV + TG+GKT A+ LP+L+
Sbjct: 80 TFADLGLPRDLLRAITDMGFVSPTDIQREAIPVLLEGRDVVGVAQTGTGKTAAFGLPLLN 139
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+V S +G +++A+++AP+REL MQ I + S V + GG+
Sbjct: 140 EV-----DSRDG--------EVQALVLAPTRELAMQSADAIADMAHRSRGLDVVAVYGGS 186
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q ALR+ +VVGTPGR+ ++ G L R+ VLDE DE+L F E +
Sbjct: 187 PYGPQIAALREG-AQVVVGTPGRVIDLIEKGALVLDHVRYFVLDEADEMLRMGFAEDVET 245
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A ++ ER+T + SAT+P ++ A +DP+ ++
Sbjct: 246 I-----------------AASLPTERRTALFSATMPPAIESVAAEHLNDPVRIE------ 282
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+S SS + +++ Y V +HKV + R +
Sbjct: 283 ---------------VSRQSSTVD------------SVQQSYAVVPFRHKVGAVSRILAV 315
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
DA+ I F+ +D +L RG++AA + GD+ + R +++ + G + VLV
Sbjct: 316 TDAEAAIVFVRTKSTAEDVAIELSGRGIQAAAISGDVPQRERERLIERLRQGSLDVLVAT 375
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV LVVN D+P ++ Y HR GRTGR GR G ++ E ++++++
Sbjct: 376 DVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRTGEAITFLTPKEKGKLRQIER 435
>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 543
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/432 (31%), Positives = 210/432 (48%), Gaps = 64/432 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LG+ L+ +L +G + PT VQ AIP +L+ D++ Q+ TG+GKTLA++LPIL
Sbjct: 23 NFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILE 82
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ P SNG+ +A+IV P+REL +QI E+KKL+ V + GG
Sbjct: 83 KIDP-----SNGS--------TQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQ 129
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q L++ + IVV TPGR+ + G + FLVLDE D++L F M
Sbjct: 130 DVEKQLHKLQR-QTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMEL 188
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ P A RQT++ SAT+P + + ++ +P ++ +
Sbjct: 189 IISQT-------P----------ASRQTMLFSATMPDDIRKLSKKHLKEPESIRIEKTF- 230
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+P L+ + + + L ++ + P L +C T+RR
Sbjct: 231 ---VPEKAIEQLAIFTTDRAKQNALISRIREDR--PFLAIIFCR--------TIRRATKL 277
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
DA LK F E ELHGDL + R +KKF+N E++ L+
Sbjct: 278 YDA------------LKSQRFSCE-------ELHGDLTQAKREKVMKKFRNAEIQFLIAT 318
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV V N D+P DS Y HR GRTGR G+ G V+ E + +K +++
Sbjct: 319 DVAARGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKAIEQ 378
Query: 531 QLAVPIQACEFT 542
+L + + E T
Sbjct: 379 ELNIRLPKEEST 390
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 210/426 (49%), Gaps = 64/426 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+FL+LG+ +L L G+ P+ +Q+A IP +L +DVV + TG+GKT A+ +P+LS
Sbjct: 29 TFLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVLS 88
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ +GES +A+++AP+REL +Q+ K V + GG
Sbjct: 89 KI----------DGESRTP---QALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQ 135
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ I+VGTPGR+ + G L FLVLDE DE+L+ F+E + R
Sbjct: 136 SYGVQLSGLRRGA-QIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVER 194
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ A+ E K Q + SAT+P ++ + A+ + HDP+ + K
Sbjct: 195 IL--------ADTPEFK---------QVALFSATMPPAIRKIAKKYLHDPVEISVK---- 233
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ +++ SN+ + Y Q K+D L R +
Sbjct: 234 ----------------AKTATGSNITQR-------------YLQVAHQRKLDALTRLLEV 264
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ +I F+ ++ KL ARG AA ++GD+ + R T+ + K+G+V +LV
Sbjct: 265 EEFDGMIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVAT 324
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR+G + E +++ ++K
Sbjct: 325 DVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIEK 384
Query: 531 QLAVPI 536
P+
Sbjct: 385 ATRQPL 390
>gi|379012782|ref|YP_005270594.1| putative RNA helicase [Acetobacterium woodii DSM 1030]
gi|375303571|gb|AFA49705.1| putative RNA helicase [Acetobacterium woodii DSM 1030]
Length = 551
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/417 (29%), Positives = 207/417 (49%), Gaps = 64/417 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL + LL +E GF TE+Q AIP ++ D++ +S TG+GKT+A+ +P ++K
Sbjct: 3 FTELEINEQLLRGIEEMGFVEMTEIQEQAIPQLMMGGDLIGKSQTGTGKTVAFAIPAITK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P S KK ++ +++ P+REL +Q+ E KK+L V + GGA+
Sbjct: 63 LDP-----------SIKK--VQVLVLCPTRELAVQVSDEFKKVLKYQKGVKVLPIFGGAS 109
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q L K+ IVVGTPGR+ + L +VLDE DE+L+ FRE + I
Sbjct: 110 IETQIREL-KSGVQIVVGTPGRVMDHMRRKTLKLSDISMVVLDEADEMLNMGFREDIELI 168
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + E QT++ SAT+P +++ A ++ +P+LV+
Sbjct: 169 LDEIAH-----------------EIQTVLFSATMPKPILKIAETYQKNPVLVEI------ 205
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S N+ A +Q Y+ ++ HK + L R +
Sbjct: 206 -------------------SPKNMVATSIEQK-------YFNISD-HHKFEALTRLLDVY 238
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
Q + F N + + + L+ G ++HGD+ +++R LK+F G++ +LV +
Sbjct: 239 KPQRSLIFCNTKKYVDEITDDLKKLGYSVDKIHGDMRQMSRMAVLKQFSRGQLNILVATD 298
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
++ARG+DV + D+V N D+P + +Y HR GRTGR G+ G +++ + F +KK+
Sbjct: 299 VAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGISLTLARSRDQFRLKKI 355
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 198/415 (47%), Gaps = 69/415 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F E L P +++ + GF T +QS +IP L+ D++ Q+ TG+GKT A+ +P++
Sbjct: 2 TTFAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--V 227
+K+ +K I A+I+AP+REL +Q+ EI+KL S K ++ L
Sbjct: 62 NKISRSDEK-------------IRALIMAPTRELAIQVAEEIEKL---SRFKGLRTLPIY 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + RQ AL+K KP I++GTPGR+ + + +VLDE DE+L F E
Sbjct: 106 GGQDIVRQIRALKK-KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMED 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I++ V ERQT++ SAT+P ++ R A + +P V +
Sbjct: 165 IQSILKQVP-----------------DERQTMLFSATMPANIKRLAEQFLKNPEHV---S 204
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
VIP Q P + Y + K + L R
Sbjct: 205 VIP------------------------------KQVSAPLIDQAYIEVPERQKFEALSRL 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F R++ + L+ RG A LHGDL + R ++KF++G + VL
Sbjct: 235 IDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
V +++ARGLDV+ VVN DLP D Y HR GRTGR G+ G S E+
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREI 349
>gi|227548399|ref|ZP_03978448.1| superfamily II helicase, partial [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 683
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 207/432 (47%), Gaps = 64/432 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F +L LP ++ ++ GF P+ +Q+ IP +++ DVV + TG+GKT A+ LP+L
Sbjct: 104 NGFEKLDLPDSVIAAVKMVGFEQPSPIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPVL 163
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ P + +A+++AP+REL +Q+ + K V + GG
Sbjct: 164 SQIDP-------------QLRHPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGG 210
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E +
Sbjct: 211 QAYGIQLSGLRRGA-QIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVE 269
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+E P + +Q + SAT+P + + ++ + +DP V K
Sbjct: 270 RILEDT----------PNT-------KQVALFSATMPNGIRKISKQYLNDPAEVTVK--- 309
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S + +N+N+ + Y T ++K+D + R +
Sbjct: 310 -----------------SETRTNTNITQR-------------YLFTAHRNKLDAITRILE 339
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + +I F+ + ++ KL ARG AA ++GD+ + R T+ + ++G + +LV
Sbjct: 340 VTEFEAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVA 399
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V N D+P D Y HR GRTGR GR G + E +++ ++
Sbjct: 400 TDVAARGLDVERISHVFNYDIPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 459
Query: 530 KQLAVPIQACEF 541
+ I+ E
Sbjct: 460 RVTNATIEEMEL 471
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 204/409 (49%), Gaps = 69/409 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + GL P +L+ + GF T +QS +IP L D++ Q+ TG+GKT A+ LP++
Sbjct: 3 NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLPLIH 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--G 228
K+ +++ I ++I+ P+REL +Q+ EI KL S K ++ L G
Sbjct: 63 KIAKEEER-------------IVSLIMTPTRELAIQVAEEIGKL---SRFKGIRSLAIYG 106
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ AL+K KP I++GTPGR+ + + + +VLDE DE+L F E +
Sbjct: 107 GQDIGRQIRALKK-KPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I++ V P+ ERQT++ SAT+P ++ + A + DP V +V
Sbjct: 166 QSILKLV----------PE-------ERQTLLFSATMPANIQKLASQFLKDPEHV---SV 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
I P ++S P+ DQ+ Y + K + L R +
Sbjct: 206 I---------PKHVSAPL-------------IDQA--------YIEVPERQKFEALSRLL 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F R++ + L+ RG A LHGDL + R T ++KF++G + VLV
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARGLDV+ VVN DLP D Y HR GRTGR G+ GT S
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFV 344
>gi|312883052|ref|ZP_07742783.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369212|gb|EFP96733.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 443
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 210/437 (48%), Gaps = 60/437 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LPIL K
Sbjct: 3 FKDLGLDNRLLKNLKHFDFKNATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPILHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK+KS + D A+I+AP+REL Q+ E+K +LG A +VGG N
Sbjct: 63 --SLKNKSFSAK-------DPRALILAPTRELAKQVYGELKSMLGGLSYDA-SLIVGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L G LVLDE D +L F + RI
Sbjct: 113 FNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
H+ A RQT+M SAT+ + + N I L
Sbjct: 172 --HMA--------------AKHRRRQTLMFSATLDHADV----------------NDIAL 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E + A P ++ + GS+ + ++ K +Y L HK L R +
Sbjct: 200 EMLDA--PKRIAIDI-GSAEHKDISQK------------FYLCDHLDHKESLLERAIQEA 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + +I F + KL + G+KA L G L + R+T + +F+ ++LVT +
Sbjct: 245 NYKQLIIFTATRVDTERLTEKLNSDGLKAIALSGSLTQTQRNTIMSQFERAVFKILVTTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G +S + K+++
Sbjct: 305 IASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISFVGPKDWDSFKRVETY 364
Query: 532 LAVPIQACEFT--EGRL 546
L I +F EG+
Sbjct: 365 LQQDINFSQFDGLEGKF 381
>gi|359415411|ref|ZP_09207874.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Haloredivivus sp. G17]
gi|358034268|gb|EHK02710.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Haloredivivus sp. G17]
Length = 366
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 205/428 (47%), Gaps = 78/428 (18%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L + +++RLE G + PTEVQ AIP + + D++++S TGSGKTLA+ LP++
Sbjct: 2 NFSKLNISDNIVQRLEENGIDTPTEVQQKAIPEVFEGKDLLVESETGSGKTLAFSLPVIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ SG K IEA+I++P+REL QI EI+ + + V + GG
Sbjct: 62 EI-------------SGNK--IEALILSPTRELAKQISAEIEM----ASEIDVVTIYGGV 102
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q E + IVVGTPGR+ ++ GK+ G F +LDE D +L F++ +
Sbjct: 103 SYEPQIEGAK--TANIVVGTPGRVLDLLQKGKVDVSGLEFFILDEADRMLDMGFQDELES 160
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + P RQ ++ AT+P + + + DP ++ K
Sbjct: 161 IIDFL----------PDY-------RQNLLFGATIPPGLKKMCDRYSIDPETIRIKK--- 200
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S + NL+ K Y K KV L +
Sbjct: 201 ------------------SENTRNLEDK-------------YVNAKSDEKVSMLYSLLKE 229
Query: 411 LDAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
D I F N TR L D KL + A EL+GD+ + R +++F+ G++RV+
Sbjct: 230 RDRNLSIVFCQTKNTTRWLAD---KLRKNDIDAQELNGDMSQHQREDVVERFEKGDIRVI 286
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+ + V N D+P + Y HR GR GR GR G +++ E + +K
Sbjct: 287 VATDVAARGLDIDDITHVFNYDVPDTADTYTHRIGRAGRQGREGEAITLLEREDHKKFRK 346
Query: 528 MQKQLAVP 535
+++ L +P
Sbjct: 347 IKRSLDIP 354
>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
180]
Length = 662
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 206/429 (48%), Gaps = 64/429 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL P++ + ++ G+ PT +QS IP +L D++ Q+ TG+GKT A+ LP+LS+
Sbjct: 11 FDALGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPMLSR 70
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P K + +++ P+REL +Q+ ++ V + GG
Sbjct: 71 LDPDLRKP-------------QVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQG 117
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q L++N P ++VGTPGR+ + G L R LVLDE DE+L+ F E + I
Sbjct: 118 YGLQLSQLKRN-PQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWI 176
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ AERQ + SAT+P ++ R A++ DP+ V+
Sbjct: 177 FDQAP-----------------AERQVALFSATMPPAIRRVAQTRLVDPVEVK------- 212
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
++ +S + ++ ++C+ HK+D L R +
Sbjct: 213 --------------IAANSETVD------------TIEQHHCIVTRFHKLDVLTRIMELE 246
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
++ F+ + KL+A G A L+GD+ + R T+++ K G++ VLV +
Sbjct: 247 PFDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVATD 306
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLDV VVN D+PTD Y HR GRTGR GR G + + E E ++K +++
Sbjct: 307 VAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIERV 366
Query: 532 LAVPIQACE 540
+ PI + E
Sbjct: 367 IRRPIPSME 375
>gi|224108776|ref|XP_002333344.1| predicted protein [Populus trichocarpa]
gi|222836269|gb|EEE74690.1| predicted protein [Populus trichocarpa]
Length = 121
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/111 (81%), Positives = 100/111 (90%)
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
M AA LHGDLGKL RS LKKFK+G+VRVLVTNEL+ARGLDV ECDLVVNLDLPTD IHY
Sbjct: 1 MNAAGLHGDLGKLGRSPILKKFKSGQVRVLVTNELAARGLDVPECDLVVNLDLPTDPIHY 60
Query: 498 AHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVI 548
AHRAGRTGRLGR+GTV++ICEEPEVFVVKK+QK L V I ACEFT+G+LV+
Sbjct: 61 AHRAGRTGRLGRKGTVLTICEEPEVFVVKKLQKLLGVSIPACEFTKGKLVV 111
>gi|433457741|ref|ZP_20415720.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
gi|432194443|gb|ELK51067.1| DNA/RNA helicase [Arthrobacter crystallopoietes BAB-32]
Length = 635
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 203/419 (48%), Gaps = 62/419 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + GL +L L G+ P+ +Q+A IP++L+ DVV + TG+GKT A+ +P LS+
Sbjct: 26 FTDFGLDGRVLAALTDVGYEKPSPIQAATIPALLEGRDVVGLAQTGTGKTAAFAIPALSR 85
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ L K T I +++AP+REL +Q+ + V + GG+
Sbjct: 86 MAELPPT---------KNTQI--LVLAPTRELALQVAEAFSSYAAHMEDFTVLPVYGGSA 134
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q LR+ +VVGTPGR+ + G L +++VLDE DE+L F E + RI
Sbjct: 135 YGPQLAGLRRGA-QVVVGTPGRVIDHIEKGSLDLSELQYVVLDEADEMLRMGFAEEVDRI 193
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ A P E +Q + SAT+P ++ R A+ + DP + K
Sbjct: 194 LD-------ATPEE----------KQVALFSATMPTAIRRIAKKYLKDPAEISVK----- 231
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S +S+ +N++ + Y HK+D + R +
Sbjct: 232 ---------------SKTSTGTNIRQR-------------YVQVMGAHKLDAMTRILETE 263
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ VIAF+ +D KL+ARG AA ++GD+ + R T++ + G++ +LV +
Sbjct: 264 EFDGVIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTVEALREGKIDILVATD 323
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E ++++ ++K
Sbjct: 324 VAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDAILFMTPREKYLLRAIEK 382
>gi|374604838|ref|ZP_09677788.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
gi|374389546|gb|EHQ60918.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
Length = 517
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 202/414 (48%), Gaps = 69/414 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F+E GL P LL+ + GF T +Q AIP + D++ Q+ TG+GKT A+ +P++S
Sbjct: 3 TFVEFGLEPKLLQAITELGFEEATPIQEKAIPVAMTGRDLIGQAQTGTGKTAAFGIPLIS 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ P +++ + A+++ P+REL +Q+ EI KL + K V+ L G
Sbjct: 63 KIDPSEER-------------VVALVMTPTRELAIQVAEEIGKL---TRFKGVRSLPIYG 106
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ AL+K+ P I++GTPGR+ + + + +VLDE DE+L F E +
Sbjct: 107 GQDIGRQIRALKKH-PQIIIGTPGRLLDHINRKTIRLDHVQTVVLDEADEMLDMGFMEDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ V P+ ERQT++ SAT+P ++ + A + DP V
Sbjct: 166 TSILSLV----------PE-------ERQTMLFSATMPPNIQKLANQFLRDPEHV----- 203
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ P +S P+ ++ Y + K D L R +
Sbjct: 204 -------SVMPKQVSAPL---------------------IEQAYIEVPERVKFDALSRLL 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F R++ + L+ RG A LHGDL + R ++KF++G + VLV
Sbjct: 236 DMESPELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARGLDV+ V+N DLP D Y HR GRTGR G+ G+ S E+
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTPREI 349
>gi|403386448|ref|ZP_10928505.1| DEAD/DEAH box helicase [Clostridium sp. JC122]
Length = 422
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 216/449 (48%), Gaps = 66/449 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
F L + ++ L+ +G VPT +Q I IL+N D+V +S TGSGKTLAYLLPI
Sbjct: 4 DFKNLKIQDNIINALKLQGIKVPTSIQGKTIEHILENKDLVGESETGSGKTLAYLLPIFE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ-QLVGG 229
K+ DK N + +I+ P+ EL +Q+ + I KL S ++G
Sbjct: 64 KIDI--DKKEN-----------QVIILTPTHELAVQVHKVIDKLSKDSKMNITSTTIIGN 110
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N RQ E L K K I++G+ GRI E+ K+ H + +VLDE D+LL N E
Sbjct: 111 VNIKRQTEKL-KEKQHIIIGSGGRILELIKKRKISAHTVKTIVLDECDKLLDENNNEVTK 169
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+++ R +RQ + SATV V++ A DP++++ V
Sbjct: 170 AVIKTTLR-----------------DRQLLCFSATVTEEVLKFANESMKDPVIIKEDKV- 211
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
PM +N N++ H + + K +R+ V
Sbjct: 212 ---------------PM----ANKNIE-------------HMCFLCDKRDKTLMVRKLVA 239
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
AL + I F+NN+ ++ KL+ G+KA + G K R ++ +F NG+ +LV+
Sbjct: 240 ALKPKKAIVFINNSNDVEVITDKLKYHGLKAVSISGGDFKSNRKKSMDEFINGKSNILVS 299
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++L+ARG+D+ ++N+DLP + + Y HR+GR GR +G VS+ E E ++ K++
Sbjct: 300 SDLTARGIDIRGITHIINIDLPGNEMDYLHRSGRCGRGKNKGISVSVITEIEKPLITKLE 359
Query: 530 KQLAVPIQACEFTEGRLVIGKEEEKTLEA 558
+ + I E G +V EE+K ++
Sbjct: 360 NKFKINIPLKELYFGNIV-NDEEKKQMKT 387
>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 546
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 199/409 (48%), Gaps = 69/409 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F E GL P +L+ + GF T +QS +IP L D++ Q+ TG+GKT A+ +P+++
Sbjct: 3 TFAEFGLEPKVLQAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIPLIN 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ +D+ I A+I+ P+REL +Q+ EI KL + K ++ L G
Sbjct: 63 KIPVTEDR-------------IVALIMTPTRELAIQVAEEIGKL---TRYKGLRSLPIYG 106
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G RQ AL+K+ P I++GTPGR+ + + + ++LDE DE+L F E +
Sbjct: 107 GQEIGRQIRALKKH-PQIIIGTPGRLLDHINRKTIKLADVQTVILDEADEMLDMGFMEDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ V AERQT++ SAT+P ++ R A+++ ++P V +V
Sbjct: 166 TSILSMVP-----------------AERQTMLFSATMPPNIQRLAQTFLNNPEHV---SV 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
IP Q P + Y + K + L R +
Sbjct: 206 IP------------------------------KQVSAPLIDQAYIEVHERQKFEALSRLI 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F R++ + L+ RG A LHGDL + R ++KF++G + VLV
Sbjct: 236 DMESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARGLDV+ V+N DLP D Y HR GRTGR G+ GT S
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFV 344
>gi|359413095|ref|ZP_09205560.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
gi|357171979|gb|EHJ00154.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
Length = 407
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 216/431 (50%), Gaps = 66/431 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ SF +L L ++E L+++G +PT +Q++AI L+N DV+ +++TGSGKTLAYL+P+
Sbjct: 2 STSFTDLNLNSNIIEGLKKQGITIPTPIQASAIMPALENKDVIGEAFTGSGKTLAYLIPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL-- 226
K+ K +++ +I+AP+ EL +QI +I KLL + + L
Sbjct: 62 FHKI-------------DTTKREMQGIILAPTHELAIQIEDQI-KLLAENSGVPLTSLSI 107
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
+G N + Q + L+ KP I+VG+ GRI ++ K+ H + +V+DE D LL
Sbjct: 108 IGDVNINNQIKKLKDIKPHIIVGSTGRILDLIQKKKITAHTIKTIVIDEGDNLLD----- 162
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+R K+ + +RQ ++ SA++ + A+S DP++++
Sbjct: 163 ---------PKRDAITKNIIKTTM---KDRQLMVFSASIKPETLETAKSLMKDPIILKT- 209
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
ES P S+ P +KH + V + + K +TLR+
Sbjct: 210 -----ESKP---------------------------SINPNIKHIFIVCERRDKFETLRK 237
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A++ + I F+N+ ++ KL + G + K R ++ F+NG++++
Sbjct: 238 LLVAVNPEKAIIFVNDNDDIELTTVKLNYHSKDCFAMTGKISKEDRKLAIESFRNGKIKI 297
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV+++++ARGLDV V +LDLP Y HR+GRT R GT + + ++ ++K
Sbjct: 298 LVSSDVTARGLDVEGVTHVFHLDLPLKLNEYLHRSGRTARGNAHGTSICLATTKQLNIIK 357
Query: 527 KMQKQLAVPIQ 537
K +K+ + +
Sbjct: 358 KYEKEFNIQFE 368
>gi|451943907|ref|YP_007464543.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903294|gb|AGF72181.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 697
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 210/441 (47%), Gaps = 69/441 (15%)
Query: 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
E ES FA+ LGLP +L+ + + G+ P+ +Q+ IP ++ DVV + TG+GK
Sbjct: 79 ETESQGFAS-----LGLPGAVLDAVTKVGYETPSPIQAETIPVLMDGRDVVGLAQTGTGK 133
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
T A+ LP+L+++ + ++S +A+++AP+REL +Q+ +
Sbjct: 134 TAAFALPVLARID-VAERSP------------QALVLAPTRELALQVADAFQSFADHLGD 180
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
V + GG Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L
Sbjct: 181 IHVLPIYGGQAYGIQLSGLRRGA-QIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEML 239
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
+ F+E + RI+ P E+Q + SAT+P + R ++ + +DP
Sbjct: 240 NMGFQEDVERILADT----------PD-------EKQVALFSATMPNGIRRISKQYLNDP 282
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+ K S + +N+N+ + Y ++K
Sbjct: 283 REITVK--------------------SETRTNTNITQR-------------YLHVAHRNK 309
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
+D + R + + +I F+ + ++ KL ARG AA ++GD+ + R T+ + K
Sbjct: 310 LDAITRILEVTEFDAMIVFVRTKHETEEIAEKLRARGFSAAAINGDIAQNQRERTVDQLK 369
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
NG + +LV +++ARGLDV V+N D+P D+ Y HR GRTGR GR G +
Sbjct: 370 NGRLDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPR 429
Query: 521 EVFVVKKMQKQLAVPIQACEF 541
E ++ +++ P+ E
Sbjct: 430 ERRMLNSIERATNAPLDEMEL 450
>gi|8698723|gb|AAF78481.1|AC012187_1 Contains similarity to DEAD box RNA helicase (RH9) from Arabidopsis
thaliana gb|AJ010461 and contains a Helicase PF|00271
domain. EST gb|AI997215 comes from this gene. This gene
may be cut off [Arabidopsis thaliana]
Length = 115
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 101/111 (90%)
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAG 502
+HGDLGKL RST LKKFKNGE++VLVTNELSARGLDVAECDLVVNL+LPTD++HYAHRAG
Sbjct: 1 MHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAG 60
Query: 503 RTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEE 553
RTGRLGR+GTVV++CEE +VF+VKKM+KQL +P CEF +G LV+ +E++
Sbjct: 61 RTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFLYCEFVDGELVVTEEDK 111
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 203/409 (49%), Gaps = 69/409 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + GL P +L+ + GF T +QS +IP L D++ Q+ TG+GKT A+ LP++
Sbjct: 3 NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIH 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--G 228
K+ +++ I A+I+ P+REL +Q+ EI KL S K ++ L G
Sbjct: 63 KIAKEEER-------------IVALIMTPTRELAIQVAEEIGKL---SRFKGIRSLAIYG 106
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ AL K KP I++GTPGR+ + + + +VLDE DE+L F E +
Sbjct: 107 GQDIGRQIRAL-KRKPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I++ V P+ ERQT++ SAT+P ++ + A + +P V +V
Sbjct: 166 QSILKLV----------PE-------ERQTLLFSATMPANIQKLASQFLKEPEHV---SV 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
I P ++S P+ DQ+ Y + K + L R +
Sbjct: 206 I---------PKHVSAPL-------------IDQA--------YIEVPERQKFEALSRLL 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F R++ + L+ RG A LHGDL + R T ++KF++G + VLV
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARGLDV+ VVN DLP D Y HR GRTGR G+ GT S
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFV 344
>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 547
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 201/408 (49%), Gaps = 64/408 (15%)
Query: 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184
L+ F T +Q+ IP I+K HDV+ Q+ TG+GKT A+ +PI+ K+ P K+
Sbjct: 18 LKELNFIDTTPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPIIEKINPKIQKT----- 72
Query: 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKP 244
+++I+ P+REL +Q+ E+KKLL + + + GG + ++Q +L KP
Sbjct: 73 --------QSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRSLEA-KP 123
Query: 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
+++ TPGR + GK+ + L LDE DE+L F+EA+ I++ +
Sbjct: 124 HLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPE------- 176
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSG 364
ERQT++ SAT+P + + A + D ++Q +P++++
Sbjct: 177 ----------ERQTVLFSATLPPFIKKIASKYQKDTKILQ----VPVKNIAVN------- 215
Query: 365 PMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
A++ Y + K K L R + + I F N +
Sbjct: 216 ----------------------AIEQNYFLVKEVDKAKLLVRLLDLKKDYSTILFANTKK 253
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
+ + L+ +G A +HGDL + R + F+ G++++L+ +++ARGLD+++ +
Sbjct: 254 DVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGLDISDIKM 313
Query: 485 VVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
V+N DLP + Y HR GRTGR G++G S+ +V +KK++ L
Sbjct: 314 VINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLEYYL 361
>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
Length = 580
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 197/407 (48%), Gaps = 66/407 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ +L+ +E G+ P+++QS AIP +L DV+ Q+ TG+GKT A+ +PI+
Sbjct: 7 FSDLGISSEILKSVEEMGYTQPSQIQSQAIPFVLDGRDVIGQAQTGTGKTAAFGIPIIDL 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V P +K ++AVI+ P+REL +Q+ EI+KL K + GG +
Sbjct: 67 VDPDFNK-------------VQAVILCPTRELAVQVEGEIQKLAKYHRKINSVAIYGGES 113
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ LRK IVVGTPGR+ + G L +VLDE DE+L FR+ + I
Sbjct: 114 IDRQIRVLRKG-VQIVVGTPGRVQDHINRGTLKLENTGIIVLDEADEMLDMGFRDDIEAI 172
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ-AKNVIP 350
++ M +RQT+ SAT+ ++ R + ++P +++ AK +
Sbjct: 173 LQE-----------------MPEKRQTVFFSATMAKPILDLTRKYQNNPEIIKVAKKELT 215
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
++ + +Q + P+L K++ + R ++
Sbjct: 216 VDRI-----------------------EQVFYEVKPSL-----------KLELMARLMNV 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F N R +A L +RG+ A LHGDL + R + KF+ G VLV
Sbjct: 242 NNYALSVVFCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLCTVLVAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARG+DV + V N DLP D Y HR GRTGR G+ G ++
Sbjct: 302 DVAARGIDVDNVEAVFNFDLPLDDESYVHRIGRTGRAGKSGKAINFV 348
>gi|425446720|ref|ZP_18826721.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
gi|389732942|emb|CCI03221.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
Length = 479
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 208/423 (49%), Gaps = 68/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL L+ LE GF PTE+Q+ AIP +L+ HD+V S TG+GKT AY LP+L +
Sbjct: 5 FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGG 229
+ K +++A+I+ P+REL Q+ IK SD + + + GG
Sbjct: 65 M-------------DTKNPNVQALILTPTRELAQQVASAIKDF---SDDRRLFILTVCGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ +L K IVVGTPGR+ ++ KLH ++VLDE DE+LS F + +
Sbjct: 109 QSMERQIRSLEKGV-QIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVK 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ A+P + RQT SAT+P + ++ P+ V
Sbjct: 168 KILQ-------ASP----------STRQTACFSATMPREIRDLIANFLKSPISVTV---- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S P P + + Y + + K+ L+ +
Sbjct: 207 ---SQPQAAPAKIE-------------------------QKIYMIPRGWTKLKVLQPLLE 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++ I F+ + + KL+ G E HG+L ++ R +++F+ G+++++V
Sbjct: 239 IEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V+N DLP ++ Y HR GRTGR G+ GT +S+ E + ++++++
Sbjct: 299 TDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIE 358
Query: 530 KQL 532
++L
Sbjct: 359 QRL 361
>gi|430749671|ref|YP_007212579.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430733636|gb|AGA57581.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 517
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 205/415 (49%), Gaps = 69/415 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F E GL P +L+ + GF T +Q+ AIP + D++ Q+ TG+GKT A+ +P++
Sbjct: 2 KTFAEFGLEPKVLQAVTEMGFEESTPIQAKAIPIAMSGADLIGQAQTGTGKTAAFGIPLI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--V 227
SK+ P +++ I A+++ P+REL +Q+ E+ KL + K ++ L
Sbjct: 62 SKIPPEEER-------------IVALVMTPTRELAIQVADELGKL---ARYKGIRTLPIY 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + RQ AL+K KP I++GTPGR+ + + + +VLDE DE+L F E
Sbjct: 106 GGQDIGRQIRALKK-KPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMED 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I+ V P+ ERQT++ SAT+P ++ + A+ + +P V +
Sbjct: 165 ITTILSLV----------PE-------ERQTMLFSATMPPNIQKLAQQFLRNPEHV---S 204
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
VIP N+ A P+++ Y + K + L R
Sbjct: 205 VIP----------------------KNITA--------PSIEQIYIEVHEREKFEALSRL 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ I F R++ + L+ RG A LHGDL + R T ++KF++G + VL
Sbjct: 235 LDMESPDLAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDTVMRKFRDGSIDVL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
V +++ARGLDV+ V+N DLP D Y HR GRTGR G+ G + E+
Sbjct: 295 VATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGVAYTFVTPREI 349
>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
Length = 479
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 208/423 (49%), Gaps = 68/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL L+ LE GF PTE+Q+ AIP +L+ HD+V S TG+GKT AY LP+L +
Sbjct: 5 FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGG 229
+ K +++A+I+ P+REL Q+ IK SD + + + GG
Sbjct: 65 M-------------DTKNPNVQALILTPTRELAQQVASAIKDF---SDDRRLFILTVCGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ +L K IVVGTPGR+ ++ KLH ++VLDE DE+LS F + +
Sbjct: 109 QSMERQIRSLEKGV-QIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVK 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ A+P + RQT SAT+P + ++ P+ V
Sbjct: 168 KILQ-------ASP----------STRQTACFSATMPREIRDLIANFLKSPISVTV---- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S P P + + Y + + K+ L+ +
Sbjct: 207 ---SQPQAAPAKIE-------------------------QKIYLIPRGWTKLKVLQPLLE 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++ I F+ + + KL+ G E HG+L ++ R +++F+ G+++++V
Sbjct: 239 IEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V+N DLP ++ Y HR GRTGR G+ GT +S+ E + ++++++
Sbjct: 299 TDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIE 358
Query: 530 KQL 532
++L
Sbjct: 359 QRL 361
>gi|425461891|ref|ZP_18841365.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443648367|ref|ZP_21129987.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389825195|emb|CCI25254.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443335213|gb|ELS49690.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
Length = 479
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 208/423 (49%), Gaps = 68/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL L+ LE GF PTE+Q+ AIP +L+ HD+V S TG+GKT AY LP+L +
Sbjct: 5 FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGG 229
+ K +++A+I+ P+REL Q+ IK SD + + + GG
Sbjct: 65 M-------------DTKNPNVQALILTPTRELAQQVASAIKDF---SDDRRLFILTVCGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ +L K IVVGTPGR+ ++ KLH ++VLDE DE+LS F + +
Sbjct: 109 QSMERQIRSLEKGV-QIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVK 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ A+P + RQT SAT+P + ++ P+ V
Sbjct: 168 KILQ-------ASP----------STRQTACFSATMPREIRDLIANFLKSPISVTV---- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S P P + + Y + + K+ L+ +
Sbjct: 207 ---SQPQAAPAKIE-------------------------QKIYMIPRGWTKLKVLQPLLE 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++ I F+ + + KL+ G E HG+L ++ R +++F+ G+++++V
Sbjct: 239 IEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V+N DLP ++ Y HR GRTGR G+ GT +S+ E + ++++++
Sbjct: 299 TDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIE 358
Query: 530 KQL 532
++L
Sbjct: 359 QRL 361
>gi|425471042|ref|ZP_18849902.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
gi|389883157|emb|CCI36432.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
Length = 479
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 208/423 (49%), Gaps = 68/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL L+ LE GF PTE+Q+ AIP +L+ HD+V S TG+GKT AY LP+L +
Sbjct: 5 FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGG 229
+ K +++A+I+ P+REL Q+ IK SD + + + GG
Sbjct: 65 M-------------DTKNPNVQALILTPTRELAQQVASAIKDF---SDDRRLFILTVCGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ +L K IVVGTPGR+ ++ KLH ++VLDE DE+LS F + +
Sbjct: 109 QSMERQIRSLEKGV-QIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVK 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ A+P + RQT SAT+P + ++ P+ V
Sbjct: 168 KILQ-------ASP----------STRQTACFSATMPREIRDLIANFLKSPISVTV---- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S P P + + Y + + K+ L+ +
Sbjct: 207 ---SQPQAAPAKIE-------------------------QKIYLIPRGWTKLKVLQPLLE 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++ I F+ + + KL+ G E HG+L ++ R +++F+ G+++++V
Sbjct: 239 IEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V+N DLP ++ Y HR GRTGR G+ GT +S+ E + ++++++
Sbjct: 299 TDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIE 358
Query: 530 KQL 532
++L
Sbjct: 359 QRL 361
>gi|425442860|ref|ZP_18823096.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|425467451|ref|ZP_18846734.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
gi|389715972|emb|CCH99724.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|389829775|emb|CCI28639.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
Length = 479
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 208/423 (49%), Gaps = 68/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL L+ LE GF PTE+Q+ AIP +L+ HD+V S TG+GKT AY LP+L +
Sbjct: 5 FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGG 229
+ K +++A+I+ P+REL Q+ IK SD + + + GG
Sbjct: 65 M-------------DTKNPNVQALILTPTRELAQQVASAIKDF---SDDRRLFILTVCGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ +L K IVVGTPGR+ ++ KLH ++VLDE DE+LS F + +
Sbjct: 109 QSMERQIRSLEKGV-QIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVK 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ A+P + RQT SAT+P + ++ P+ V
Sbjct: 168 KILQ-------ASP----------STRQTACFSATMPREIRDLIANFLKSPVSVTV---- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S P P + + Y + + K+ L+ +
Sbjct: 207 ---SQPQAAPAKIE-------------------------QKIYLIPRGWTKLKVLQPLLE 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++ I F+ + + KL+ G E HG+L ++ R +++F+ G+++++V
Sbjct: 239 IEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V+N DLP ++ Y HR GRTGR G+ GT +S+ E + ++++++
Sbjct: 299 TDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIE 358
Query: 530 KQL 532
++L
Sbjct: 359 QRL 361
>gi|390438620|ref|ZP_10227070.1| putative RNA helicase [Microcystis sp. T1-4]
gi|389837951|emb|CCI31194.1| putative RNA helicase [Microcystis sp. T1-4]
Length = 479
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 208/423 (49%), Gaps = 68/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL L+ LE GF PTE+Q+ AIP +L+ HD+V S TG+GKT AY LP+L +
Sbjct: 5 FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGG 229
+ K +++A+I+ P+REL Q+ IK SD + + + GG
Sbjct: 65 M-------------DTKNPNVQALILTPTRELAQQVASAIKDF---SDDRRLFILTVCGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ +L K IVVGTPGR+ ++ KLH ++VLDE DE+LS F + +
Sbjct: 109 QSMERQIRSLEKGV-QIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVK 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ A+P + RQT SAT+P + ++ P+ V
Sbjct: 168 KILQ-------ASP----------STRQTACFSATMPREIRDLIANFLKSPVSVTV---- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S P P + + Y + + K+ L+ +
Sbjct: 207 ---SQPQAAPAKIE-------------------------QKIYLIPRGWTKLKVLQPLLE 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++ I F+ + + KL+ G E HG+L ++ R +++F+ G+++++V
Sbjct: 239 IEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V+N DLP ++ Y HR GRTGR G+ GT +S+ E + ++++++
Sbjct: 299 TDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIE 358
Query: 530 KQL 532
++L
Sbjct: 359 QRL 361
>gi|422302445|ref|ZP_16389808.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|425454118|ref|ZP_18833865.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
gi|389788317|emb|CCI16072.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|389805290|emb|CCI14994.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
Length = 479
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 208/423 (49%), Gaps = 68/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL L+ LE GF PTE+Q+ AIP +L+ HD+V S TG+GKT AY LP+L +
Sbjct: 5 FNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGG 229
+ K +++A+I+ P+REL Q+ IK SD + + + GG
Sbjct: 65 M-------------DTKNPNVQALILTPTRELAQQVASAIKDF---SDDRRLFILTVCGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ +L K IVVGTPGR+ ++ KLH ++VLDE DE+LS F + +
Sbjct: 109 QSMERQIRSLEKGV-QIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVK 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ A+P + RQT SAT+P + ++ P+ V
Sbjct: 168 KILQ-------ASP----------STRQTACFSATMPREIRDLIANFLKSPVSVTV---- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S P P + + Y + + K+ L+ +
Sbjct: 207 ---SQPQAAPAKIE-------------------------QKIYLIPRGWTKLKVLQPLLE 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++ I F+ + + KL+ G E HG+L ++ R +++F+ G+++++V
Sbjct: 239 IEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V+N DLP ++ Y HR GRTGR G+ GT +S+ E + ++++++
Sbjct: 299 TDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIE 358
Query: 530 KQL 532
++L
Sbjct: 359 QRL 361
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 204/409 (49%), Gaps = 69/409 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + GL P +L+ + GF T +QS +IP L D++ Q+ TG+GKT A+ LP++
Sbjct: 3 NFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIH 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--G 228
K+ +++ I A+++ P+REL +Q+ EI KL S K ++ L G
Sbjct: 63 KIAKEEER-------------IVALVMTPTRELAIQVAEEIGKL---SRFKGIRSLAIYG 106
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ AL+K KP I++GTPGR+ + + + +VLDE DE+L F + +
Sbjct: 107 GQDIGRQIRALKK-KPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMDDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I++ V P++ RQT++ SAT+P ++ + A + DP V +V
Sbjct: 166 QSILKLV----------PEN-------RQTLLFSATMPPNIQKLASQFLKDPEHV---SV 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
I P ++S P+ DQ+ Y + K + L R +
Sbjct: 206 I---------PKHVSAPL-------------IDQA--------YIEVPERQKFEALSRLL 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F R++ + L+ RG A LHGDL + R T ++KF++G + VLV
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARGLDV+ VVN DLP D Y HR GRTGR G+ GT S
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFV 344
>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|397736421|ref|ZP_10503103.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|396927611|gb|EJI94838.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
Length = 586
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/431 (29%), Positives = 208/431 (48%), Gaps = 64/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L + +L+ L G+ P+ +Q+A IP +L +DVV + TG+GKT A+ +PILS
Sbjct: 12 TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ L KS +A+++AP+REL +Q+ K V + GG
Sbjct: 72 KID-LTQKSP------------QALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQ 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ +VVGTPGR+ + G L +LVLDE DE+L F+E + R
Sbjct: 119 SYGVQLSGLRRGA-HVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVER 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ A+ E K Q + SAT+P ++ + ++ + HDP+ + K
Sbjct: 178 IL--------ADTPEYK---------QVALFSATMPGAIRKISKQYMHDPVEITMK---- 216
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S +S+ SN+ + Y Q K+D L R +
Sbjct: 217 ----------------SKTSTASNISQR-------------YVQVAHQRKLDALTRVLEV 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + +I F+ + +D KL +RG A+ ++GD+ + R T+ + K+G + +LV
Sbjct: 248 EDFEAMIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVAT 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E ++K ++K
Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEK 367
Query: 531 QLAVPIQACEF 541
P+ +
Sbjct: 368 ATRQPLAEMQL 378
>gi|402814785|ref|ZP_10864378.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402507156|gb|EJW17678.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 526
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 202/414 (48%), Gaps = 69/414 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F E GL P +L+ + GF T +Q AIP + D++ Q+ TG+GKT A+ +P++S
Sbjct: 3 TFAEFGLEPKVLQAITELGFEESTPIQEKAIPVAMTGRDLIGQAQTGTGKTAAFGIPLIS 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ P +++ ++A+I+ P+REL +Q+ EI KL + K V+ L G
Sbjct: 63 KIDPTEER-------------VKALIMTPTRELAIQVADEIGKL---TRFKGVRSLPIYG 106
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ AL+K+ P I++GTPGR+ + + +VLDE DE+L F E +
Sbjct: 107 GQDIGRQIRALKKH-PQIIIGTPGRLLDHINRKTIRLDDVATVVLDEADEMLDMGFMEDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ V P+ +RQT++ SAT+P ++ + A + +P V
Sbjct: 166 TSILSLV----------PE-------QRQTMLFSATMPPNIQKLANQFLREPEHV----- 203
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ P ++S P+ + Y + K D L R +
Sbjct: 204 -------SVMPKHVSAPL---------------------IDQAYIEVPERVKFDALSRLL 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F R++ + L+ RG A LHGDL + R T ++KF++G + VLV
Sbjct: 236 DMESPELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDTVMRKFRDGSIDVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARGLDV+ V+N DLP D Y HR GRTGR G+ G+ S E+
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTPREI 349
>gi|404371101|ref|ZP_10976411.1| hypothetical protein CSBG_01606 [Clostridium sp. 7_2_43FAA]
gi|404301481|gb|EEH97980.2| hypothetical protein CSBG_01606 [Clostridium sp. 7_2_43FAA]
Length = 376
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 210/438 (47%), Gaps = 68/438 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF L + ++ L G PTE+Q IP L+ +++ QS TG+GKTLAYLLPI+
Sbjct: 4 SFENLKINEKIISGLNAMGIKEPTEIQEKIIPLALEKTNLIGQSETGTGKTLAYLLPIIE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ-LVGG 229
+ K +++ +I+AP+ EL +QI I +L S + L+G
Sbjct: 64 NIDI-------------NKKEMQCIILAPTHELAIQINNTINELKKASGLEITSTPLIGS 110
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
AN RQ + L K KP I+VG+ GRI E+ K+ H + +V+DE+D+LL N +
Sbjct: 111 ANIKRQIDNL-KAKPQILVGSAGRILELIKKKKVSAHTIKNIVIDEVDKLLDKNNLPTVK 169
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I++ PK Q +M SAT+ + A++ D +V K
Sbjct: 170 DIIKVT----------PKYT-------QIMMFSATLNGKTLDIAKTLAEDIKVVSVK--- 209
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
G+ N N+ H Y T ++KV+TLR+ ++
Sbjct: 210 ------------------GNKVNENIN-------------HNYIKTDSRNKVETLRKLLN 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA-RSTTLKKFKNGEVRVLV 468
AL + V+ F N++ AV L +K A + G+ GK+ R L+ F+ G++ VL+
Sbjct: 239 ALKSPKVLVFNNDSYTTNTAVEYLSFNNVKVAAIGGN-GKMEDRKRALENFRKGKINVLI 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
++++ARGLD+ VVN D+P DS Y HRAGR GR G G V S+ ++ E ++K
Sbjct: 298 ASDIAARGLDIKGVTHVVNFDIPEDSKDYLHRAGRVGRAGETGEVFSLVDDKEEKIIKMH 357
Query: 529 QKQLAVPIQACEFTEGRL 546
+K + I + G +
Sbjct: 358 EKSFKINISERDLYRGNV 375
>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 460
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 203/433 (46%), Gaps = 60/433 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L + PTE+Q A+P + DV+ S TGSGKTLA++LP+L K
Sbjct: 18 FKDLGLDNRLLKNLAHQNIKTPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHK 77
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK KS + N D AVI+AP+REL Q+ ++ +LG A + GG N
Sbjct: 78 --SLKTKSFSKN-------DPRAVILAPTRELAKQVYSHLRAMLGGLTYDATL-ITGGEN 127
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q ALRK+ P +V TPGR+A+ L+ G L+LDE D +L F E + +I
Sbjct: 128 FNDQVNALRKH-PKFIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKI 186
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT+M SAT+ HD + A N+
Sbjct: 187 HKAASHR----------------RRQTLMFSATL-----------DHDAVNKFAGNM--- 216
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P S SN + K Q +Y L HK L + +
Sbjct: 217 ----------LDNPKRISVGLSNDEHKDITQR-------FYLCDHLDHKQAILNKIIETE 259
Query: 412 DAQTVIAFMNNTRQLKDAVFKL-EARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D ++ F TR D + KL +KA L GD+ + AR+ + +F+ ++LVT
Sbjct: 260 DYFQIMIF-TATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTT 318
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+ V+N D+P Y HR GRTGR G++GT +S+ + K+++
Sbjct: 319 DVASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKRVET 378
Query: 531 QLAVPIQACEFTE 543
L + F E
Sbjct: 379 FLQQDLSFSVFEE 391
>gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
gi|453073421|ref|ZP_21976361.1| ATP-dependent RNA helicase DeaD [Rhodococcus qingshengii BKS 20-40]
gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
PR4]
gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
gi|452756185|gb|EME14602.1| ATP-dependent RNA helicase DeaD [Rhodococcus qingshengii BKS 20-40]
Length = 591
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 126/431 (29%), Positives = 208/431 (48%), Gaps = 64/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L + +L+ L G+ P+ +Q+A IP +L+ DVV + TG+GKT A+ +P+LS
Sbjct: 12 TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLS 71
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ S K+T +A+++AP+REL +Q+ K V + GG
Sbjct: 72 RI-----------DTSIKQT--QALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQ 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ +VVGTPGR+ + G L ++LVLDE DE+L F+E + R
Sbjct: 119 SYGVQLSGLRRGA-HVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVER 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ ++Q + SAT+P S+ R ++ + ++P+ + K
Sbjct: 178 ILRDTP-----------------GDKQVALFSATMPGSIRRISKQYLNNPVEITVK---- 216
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S +S+ SN+ + Y Q K+D L R +
Sbjct: 217 ----------------SKTSTASNITQR-------------YIQVAHQRKLDALTRVLEV 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ +I F+ + +D KL ARG AA ++GD+ + R T+ + KNG + +LV
Sbjct: 248 EAFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVAT 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR+G + E ++K ++K
Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIEK 367
Query: 531 QLAVPIQACEF 541
P+ +
Sbjct: 368 ATRQPLAEMQL 378
>gi|350272022|ref|YP_004883330.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596864|dbj|BAL00825.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 558
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 200/409 (48%), Gaps = 67/409 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F +L L P LLE + GF T++Q+ +IP I DV+ +S TG+GKT+A+ +P +
Sbjct: 4 QTFSQLALSPELLEAVTEMGFTEATDIQAESIPLIRTGADVLARSQTGTGKTVAFGIPAV 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ L D +++ ++++P+REL Q EI+KL V + GG
Sbjct: 64 ERI--LAD-----------AWNVQVLVLSPTRELAHQCGEEIRKLAHHLPYVKVADIFGG 110
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A+ Q L+ +V+GTPGRI + G L + ++LDE DE+L+ FRE +
Sbjct: 111 ADYRGQFRELQSAN--LVIGTPGRIMDHMRRGTLDLSHLKLVILDEADEMLNMGFREDIE 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA-KNV 348
I++ V A+RQ ++ SAT+P ++ A+ + P+ ++ +
Sbjct: 169 VILQDVP-----------------ADRQIVLFSATIPEEILTIAQQFQRSPIRIEINREQ 211
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
I LE++ +Q +PP + K + L +
Sbjct: 212 ITLENI-----------------------RQVYVEVPP-----------RQKPEALTLLL 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
H + + F N + + +L A G LHGD+ +L R+T + F+ G V +LV
Sbjct: 238 HYYQPRRALIFSNTKTMVDELTERLSAAGFSVEGLHGDMKQLQRTTVMNGFRKGRVSILV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARG+DV++ D V+N D+P + Y HR GRTGR GR GT +++C
Sbjct: 298 ATDVAARGIDVSDLDYVINFDIPKEPDSYVHRIGRTGRAGRAGTAITLC 346
>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase [Ethanoligenens harbinense YUAN-3]
gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
YUAN-3]
Length = 530
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 212/423 (50%), Gaps = 68/423 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F +LGL +L+ ++ GF P+++Q+ AIP IL+ +DV+ Q+ TG+GKTLAY P++
Sbjct: 4 NLFAKLGLSEDVLKAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSAPVI 63
Query: 170 SKV--GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
S + GP + ++A+I+ P+REL +Q+ E+ ++ + ++ +
Sbjct: 64 SLMEHGPHQ---------------VQALILVPTRELAIQVNDELVRINRFTHFTSIP-VY 107
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG RQ AL+K IVV TPGRI + G + RF VLDE DE+L+ F +
Sbjct: 108 GGQPIDRQIRALQKGVD-IVVATPGRILDHIRRGTVDFSHVRFFVLDESDEMLNMGFIDD 166
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ +++ + AERQ+++ SAT+P + R + KN
Sbjct: 167 IQAVLD-----------------TLPAERQSLLFSATMPMQI----RKLAQQHMKPDVKN 205
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
++ + S L A +Q +Y K + + +TL R
Sbjct: 206 IVI--------------------AKSTLTATLTEQ--------FYFEVKHRDRFETLCRI 237
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + ++ I F R + + V +++RG +HGD+G+ R TLKKF++G + L
Sbjct: 238 LDVDEPESAIIFCRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFL 297
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V+N +LP D+ Y HR GRTGR R G S+ E ++K+
Sbjct: 298 VATDVAARGIDIENISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVTPREYIILKQ 357
Query: 528 MQK 530
+++
Sbjct: 358 IER 360
>gi|307108589|gb|EFN56829.1| hypothetical protein CHLNCDRAFT_51607 [Chlorella variabilis]
Length = 603
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 129/201 (64%), Gaps = 8/201 (3%)
Query: 352 ESMPATGPGNLSGPMS-------GSSSNSNLQAKQADQ-SLPPALKHYYCVTKLQHKVDT 403
E P+ G G+ P + G+SS L ++QA S+PP L+H++ + QHKVD
Sbjct: 373 ERRPSWGWGDAKSPSADAADYNPGTSSAGGLGSEQAAAASMPPHLRHHFVASAPQHKVDM 432
Query: 404 LRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE 463
LRR +HAL Q + FMN ++LKD KL AR M A LHG+L K R TTL F+ G+
Sbjct: 433 LRRTMHALGVQRALVFMNFQQRLKDTEAKLAARSMAVASLHGELTKQQRQTTLAAFRRGD 492
Query: 464 VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF 523
R L+ ++++ARGLD+ +CD V +L+LPTD+ HYAHRAGRTGR GR GTVVS+ E F
Sbjct: 493 YRALIVSDVAARGLDIPDCDAVFHLELPTDAAHYAHRAGRTGRAGRPGTVVSLVSGGERF 552
Query: 524 VVKKMQKQLAVPIQACEFTEG 544
VV+K+ ++L VPI + + G
Sbjct: 553 VVEKLGRRLGVPISEVQLSGG 573
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 146/258 (56%), Gaps = 38/258 (14%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
+A++F LG+ L L ++G + PT++Q AIP IL +V +Q+YTGSGKTLA+LLP
Sbjct: 68 SADAFKSLGVDKRLTPFLAQQGIHAPTDIQLGAIPPILAGDNVALQAYTGSGKTLAFLLP 127
Query: 168 ILSKVGPLKDK--SSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
L+ ++ +S + + ++ V+VAPSREL MQI+R + LL S ++ VQQ
Sbjct: 128 ALTLAVERAEQEWASVTRKTAWQAGSVQVVVVAPSRELAMQIMRVAQSLLPESARRGVQQ 187
Query: 226 LVGGANRSRQEEALRK-----------------------NKPAIVVGTPGRIAEISAAGK 262
+GGA RQ E L++ KP +VVGTPGR+AE+S G
Sbjct: 188 AIGGAAIWRQRENLKRASALRLKRHCGLWRCPVGLWAQMYKPFMVVGTPGRLAELSRDGS 247
Query: 263 LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVS 322
L TH R L+LDE+D+LL+ FRE M RI EH G+++ RQT++VS
Sbjct: 248 LQTHKTRLLILDEVDQLLAPQFREEMVRICEHTGKKAEGG-------------RQTLVVS 294
Query: 323 ATVPFSVIRAARSWGHDP 340
AT+ V++ A +W +P
Sbjct: 295 ATLTPRVLQMAATWCPNP 312
>gi|425436507|ref|ZP_18816943.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|425451380|ref|ZP_18831202.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440752520|ref|ZP_20931723.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
gi|389678768|emb|CCH92412.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|389767364|emb|CCI07225.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440177013|gb|ELP56286.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
Length = 479
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 208/423 (49%), Gaps = 68/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL ++ LE GF PTE+Q+ AIP +L+ HD+V S TG+GKT AY LP+L +
Sbjct: 5 FNNLGLSDSRIQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLER 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGG 229
+ K +++A+I+ P+REL Q+ IK SD + + + GG
Sbjct: 65 M-------------DTKNPNVQALILTPTRELAQQVASAIKDF---SDDRRLFILTVCGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ +L K IVVGTPGR+ ++ KLH ++VLDE DE+LS F + +
Sbjct: 109 QSMERQIRSLEKGV-QIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVK 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ A+P + RQT SAT+P + ++ P+ V
Sbjct: 168 KILQ-------ASP----------STRQTACFSATMPREIRDLIANFLKSPVSVTV---- 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S P P + + Y + + K+ L+ +
Sbjct: 207 ---SQPQAAPAKIE-------------------------QKIYLIPRGWTKLKVLQPLLE 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++ I F+ + + KL+ G E HG+L ++ R +++F+ G+++++V
Sbjct: 239 IEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V+N DLP ++ Y HR GRTGR G+ GT +S+ E + ++++++
Sbjct: 299 TDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIE 358
Query: 530 KQL 532
++L
Sbjct: 359 QRL 361
>gi|384100045|ref|ZP_10001112.1| cold-shock DEAD-box protein [Rhodococcus imtechensis RKJ300]
gi|419961081|ref|ZP_14477090.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|432350077|ref|ZP_19593489.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
gi|383842423|gb|EID81690.1| cold-shock DEAD-box protein [Rhodococcus imtechensis RKJ300]
gi|414573402|gb|EKT84086.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|430770587|gb|ELB86530.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
Length = 586
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 208/431 (48%), Gaps = 64/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L + +L+ L G+ P+ +Q+A IP +L +DVV + TG+GKT A+ +PILS
Sbjct: 12 TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ L KS +A+++AP+REL +Q+ K V + GG
Sbjct: 72 KID-LTQKSP------------QALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQ 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ +VVGTPGR+ + G L +LVLDE DE+L F+E + R
Sbjct: 119 SYGVQLSGLRRGA-HVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVER 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ A+ E K Q + SAT+P ++ + ++ + HDP+ + K
Sbjct: 178 IL--------ADTPEYK---------QVALFSATMPGAIRKISKQYMHDPVEITMK---- 216
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S +S+ SN+ + Y Q K+D L R +
Sbjct: 217 ----------------SKTSTASNISQR-------------YVQVAHQRKLDALTRVLEV 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + +I F+ + +D +L +RG A+ ++GD+ + R T+ + K+G + +LV
Sbjct: 248 EDFEAMIIFVRTKQATEDLAERLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVAT 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E ++K ++K
Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEK 367
Query: 531 QLAVPIQACEF 541
P+ +
Sbjct: 368 ATRQPLAEMQL 378
>gi|423687836|ref|ZP_17662639.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
gi|371493024|gb|EHN68628.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
Length = 445
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 203/433 (46%), Gaps = 60/433 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L + PTE+Q A+P + DV+ S TGSGKTLA++LP+L K
Sbjct: 3 FKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK KS + N D AVI+AP+REL Q+ ++ +LG A + GG N
Sbjct: 63 --SLKTKSFSKN-------DPRAVILAPTRELAKQVYSHLRAMLGGLTYDATL-ITGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q ALRK+ P +V TPGR+A+ L+ G L+LDE D +L F E + +I
Sbjct: 113 FNDQVNALRKH-PKFIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT+M SAT+ HD + A N+
Sbjct: 172 HKAASHR----------------RRQTLMFSATL-----------DHDAVNKFAGNM--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P S SN + K Q +Y L HK L + +
Sbjct: 202 ----------LDNPKRISVGLSNDEHKDITQR-------FYLCDHLDHKQAILNKIIETE 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKL-EARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D ++ F TR D + KL +KA L GD+ + AR+ + +F+ ++LVT
Sbjct: 245 DYFQIMIF-TATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+ V+N D+P Y HR GRTGR G++GT +S+ + K+++
Sbjct: 304 DVASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKRVET 363
Query: 531 QLAVPIQACEFTE 543
L + F E
Sbjct: 364 FLQQDLSFSVFEE 376
>gi|443633667|ref|ZP_21117844.1| hypothetical protein BSI_29210 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346461|gb|ELS60521.1| hypothetical protein BSI_29210 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 376
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 212/446 (47%), Gaps = 77/446 (17%)
Query: 103 ESAPFAAN--SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
++ PF N SF++ E GF PT VQ A I+ DV+ +S TG+GK
Sbjct: 3 QTWPFLHNAQSFIQ--------ENWNASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGK 54
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
TLAY LP+L ++ P + +AVI+APSREL MQI + I+ S+
Sbjct: 55 TLAYALPVLERIKP-------------DQKHPQAVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+A L+GGAN +Q E L+K+ P I+VGTPGR+ E+ A KL H + +VLDE D+L+
Sbjct: 102 RAA-SLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLV 159
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
RE M +I++ R +RQ + SAT+ R H+P
Sbjct: 160 LPEHRETMKQIIKTTLR-----------------DRQLLCFSATLKKETEDVLRELAHEP 202
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+++ Q ++ +KH Y + + K
Sbjct: 203 EVLKV---------------------------------QRSKAEAGKVKHQYLICDQRDK 229
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
V L++ + L + F+ + L KL + LH + K+ R+ + F+
Sbjct: 230 VKLLQK-LSRLQGMQALVFVRDIGNLSVYAEKLAYHHVDLGVLHSEAKKMERAKMIAAFE 288
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+GE +L+ +++ARGLD+ V++ D+P D Y HR+GRTGR G+ G V+S+ +
Sbjct: 289 DGEFPLLLATDIAARGLDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKL 347
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRL 546
E +KKM K+L V + +T G+L
Sbjct: 348 EESKLKKMAKKLGVELSEAVYTGGKL 373
>gi|326693663|ref|ZP_08230668.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc argentinum KCTC 3773]
Length = 454
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 207/445 (46%), Gaps = 75/445 (16%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
AN F + L P ++ L + GF PT VQ+ IP+IL+ DVV QS TGSGKT +L+PI
Sbjct: 5 ANQFGQFNLKPEIIIALTKIGFTKPTPVQAKLIPAILQGKDVVGQSQTGSGKTHTFLIPI 64
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL---LGPSDKKAVQQ 225
+++ + ++AVI PSREL QI + K L P + +
Sbjct: 65 FNQL-------------EQDRQYVQAVITTPSRELAAQITKAAKDFASQLNPD--ITIAE 109
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
VGG ++ RQ + L N+P IV+GTPGRI ++ +G L H +V+DE D L F
Sbjct: 110 YVGGTDKLRQIKQLENNQPQIVIGTPGRIKDLVESGALKLHAVHTMVVDEADMTLDMGFL 169
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ I +GA P+ + QT++ SAT+P + + + +PL
Sbjct: 170 TEVDYI-------AGAMPK----------DLQTLVFSATMPEKLKPFLKKYMANPLF--- 209
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
IP+ ++ A ++++ TK + K D +
Sbjct: 210 -EAIPVSTVIAD-----------------------------TIENWLLATKSKDKNDVIY 239
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ + + + F N + K+ L RG+K AE+HGD+ R +K +N E +
Sbjct: 240 QVLTTGNPYLALIFANTKDRAKEIASDLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEYQ 299
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEV 522
V +L+ARG+D+ V+N D+P++ + HR GRTGR G G +++ EE EV
Sbjct: 300 YFVATDLAARGIDIEGVSHVINDDIPSELEFFVHRVGRTGRNGMPGLAITLYGPDEEDEV 359
Query: 523 FVVKKMQKQLAVPIQACEFTEGRLV 547
++ L + +A + G V
Sbjct: 360 AELEA----LGIDFKAMQLKNGEFV 380
>gi|424851485|ref|ZP_18275882.1| ATP-dependent RNA helicase, partial [Rhodococcus opacus PD630]
gi|356666150|gb|EHI46221.1| ATP-dependent RNA helicase, partial [Rhodococcus opacus PD630]
Length = 466
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 208/431 (48%), Gaps = 64/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L + +L+ L G+ P+ +Q+A IP +L +DVV + TG+GKT A+ +PILS
Sbjct: 12 TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ L KS +A+++AP+REL +Q+ K V + GG
Sbjct: 72 KID-LTQKSP------------QALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQ 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ +VVGTPGR+ + G L +LVLDE DE+L F+E + R
Sbjct: 119 SYGVQLSGLRRGA-HVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVER 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ A+ E K Q + SAT+P ++ + ++ + HDP+ + K
Sbjct: 178 IL--------ADTPEYK---------QVALFSATMPGAIRKISKQYMHDPVEITMK---- 216
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S +S+ SN+ + Y Q K+D L R +
Sbjct: 217 ----------------SKTSTASNISQR-------------YVQVAHQRKLDALTRVLEV 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + +I F+ + +D +L +RG A+ ++GD+ + R T+ + K+G + +LV
Sbjct: 248 EDFEAMIIFVRTKQATEDLAERLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVAT 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E ++K ++K
Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEK 367
Query: 531 QLAVPIQACEF 541
P+ +
Sbjct: 368 ATRQPLAEMQL 378
>gi|344923702|ref|ZP_08777163.1| ATP-dependent RNA helicase [Candidatus Odyssella thessalonicensis
L13]
Length = 535
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 198/413 (47%), Gaps = 70/413 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGLP +L L+ F PT +Q+ IP L+ D++ + TG+GKT AY LP+++
Sbjct: 3 NFESLGLPEAILRSLKHLNFEKPTPIQAQTIPLALEGKDILGSAQTGTGKTAAYALPLIA 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ +K+ A+++ P+REL Q++ ++ +G K + L+GG
Sbjct: 63 YLMANPNKT--------------ALVMTPTRELAQQVLEGMRSFMGRDSKIWMALLIGGD 108
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q + LR N+P +++GTPGRI + G L FLVLDE D +L F + R
Sbjct: 109 SMGKQLQQLR-NRPRLIIGTPGRINDHLERGTLKLDRTGFLVLDETDRMLDMGFVVQLER 167
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I E++ NP +RQT+M SAT+ ++ R A ++ DPL +
Sbjct: 168 IAEYM------NP-----------DRQTLMFSATIAPTIERLAGNYLKDPLRISV----- 205
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
GS++ K AD+ +K T K D L V+
Sbjct: 206 -----------------GSTT------KAADKITQEVIK-----TSDAEKFDLL---VNT 234
Query: 411 LDAQ--TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
LD + T I F+ + KL RG A +HGDL + RS + F+ G+ RVLV
Sbjct: 235 LDQKQGTFIVFVKTKFGTEKLAKKLNDRGHTADAIHGDLRQSRRSNVISAFRRGKNRVLV 294
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+ + VVN DLP + HR GRTGR G GT +S E
Sbjct: 295 ATDVAARGLDIPHIEYVVNFDLPQAPEDFIHRIGRTGRAGAEGTAISFVSANE 347
>gi|262196937|ref|YP_003268146.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
gi|262080284|gb|ACY16253.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
14365]
Length = 908
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 196/408 (48%), Gaps = 65/408 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL P LL+ LE G++ P VQ+A ++ DV++QS TGSGKT + +P++
Sbjct: 63 SFAELGLQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQ 122
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ D +S G +A+I+AP+REL +Q+ REI +L P ++ + GGA
Sbjct: 123 HI----DAASKG---------AQALILAPTRELALQVSREIAQLAKPKGLH-IEPIYGGA 168
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL +V GTPGR+ + L R L+LDE DE+LS F+E + R
Sbjct: 169 PIKPQMDALAAGA-QVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIER 227
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+EH L + RQT++ SAT+P + R AR DP +
Sbjct: 228 IIEH---------------LPAKENRQTVLFSATIPDEIQRIARRHMTDPEEI------- 265
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S S N+ D S YY V+ + D L+ + A
Sbjct: 266 ------------------SLSTGNISVDDIDHS-------YYVVSGVARTRDLLK-VLRA 299
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ I F N TR+ + V K L+ +G A + DL + R +K+ ++ + LV
Sbjct: 300 ESPDSAIIFCN-TREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVA 358
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARG+D+++ V+N P Y HR GRTGR G+ G +S+
Sbjct: 359 TDVAARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLV 406
>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
Length = 460
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 203/433 (46%), Gaps = 60/433 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L + PTE+Q A+P + DV+ S TGSGKTLA++LP+L K
Sbjct: 18 FKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHK 77
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK KS + N D AVI+AP+REL Q+ ++ +LG A + GG N
Sbjct: 78 --SLKTKSFSKN-------DPRAVILAPTRELAKQVYSHLRAMLGGLTYDATL-ITGGEN 127
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q ALRK+ P +V TPGR+A+ L+ G L+LDE D +L F E + +I
Sbjct: 128 FNDQVNALRKH-PKFIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKI 186
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT+M SAT+ HD + A N+
Sbjct: 187 HKAASHR----------------RRQTLMFSATL-----------DHDAVNKFAGNM--- 216
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P S SN + K Q +Y L HK L + +
Sbjct: 217 ----------LDNPKRISVGLSNDEHKDITQR-------FYLCDHLDHKQAILNKIIETE 259
Query: 412 DAQTVIAFMNNTRQLKDAVFKL-EARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D ++ F TR D + KL +KA L GD+ + AR+ + +F+ ++LVT
Sbjct: 260 DYFQIMIF-TATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTT 318
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+ V+N D+P Y HR GRTGR G++GT +S+ + K+++
Sbjct: 319 DVASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKRVET 378
Query: 531 QLAVPIQACEFTE 543
L + F E
Sbjct: 379 FLQQDLSFSVFEE 391
>gi|383790086|ref|YP_005474660.1| DNA/RNA helicase [Spirochaeta africana DSM 8902]
gi|383106620|gb|AFG36953.1| DNA/RNA helicase, superfamily II [Spirochaeta africana DSM 8902]
Length = 587
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 133/436 (30%), Positives = 209/436 (47%), Gaps = 65/436 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPIL 169
+F +LGL P LL+ + GF +PT +Q+ IP +L ++ DV + TG+GKT A+ LPIL
Sbjct: 3 TFNDLGLIPDLLDAISARGFEIPTPIQAEMIPFLLNEDRDVTGLAQTGTGKTAAFGLPIL 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
K+ L+ +S+ +A+I+AP+RELGMQ+ REI + GG
Sbjct: 63 QKL-DLETRST------------QALILAPTRELGMQVSREIADYGRNLKGLRTATVYGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A Q LR IV TPGR+ ++ G RFL+LDE D++L F++ +
Sbjct: 110 APFGPQIRDLRAGA-HIVTATPGRLKDLLDKGIADLSKLRFLILDEADQMLDMGFKDELD 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+E ANP +RQT++ SAT+P V R A S+ +P +
Sbjct: 169 AILE------AANP-----------QRQTLLFSATMPREVARIASSYMQNPHEI------ 205
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+SG + SSN + HY+ K LRR +
Sbjct: 206 ------------VSGDRNRGSSN---------------VSHYFYRVHASDKYAALRRLID 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ I F +K+ +L G A LHG+L ++ R + +++F+ G +LV
Sbjct: 239 VQTSMYGIIFCRTREAVKEITNRLSRDGYAADALHGELSQIQRDSVMRRFREGNPALLVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV + VV+ DLP + Y HR+GRTGR G+ G+ ++ E + +++
Sbjct: 299 TDVAARGLDVDDLSHVVHYDLPDEIAAYTHRSGRTGRAGKTGSSHALVHLREGHKIGRIE 358
Query: 530 KQLAVPIQACEFTEGR 545
+ L I + G+
Sbjct: 359 QVLGRKIALGKIPSGK 374
>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
Length = 570
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 194/405 (47%), Gaps = 64/405 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF L L P +L+ LE G+ PT +Q+ IP IL D++ Q+ TG+GKT A+ LPIL
Sbjct: 6 TSFQTLSLIPPVLKALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPIL 65
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ D S+ +D +A+++AP+REL +Q+ + V + GG
Sbjct: 66 SQI----DISN---------SDPQALVLAPTRELALQVAEAFQSYASHLKGFHVLPIYGG 112
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ Q + LR+ ++VGTPGR+ + G L +FLVLDE DE+L F E +
Sbjct: 113 QSYHVQLKQLRR-AAHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVE 171
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++ P+S RQ + SAT+P ++ + A+ + + P + KN
Sbjct: 172 WVISQT----------PQS-------RQVALFSATMPAAIRKIAQKYLNSPQELAVKN-- 212
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
Q+K AD ++ + HK+D L R +
Sbjct: 213 --------------------------QSKTAD-----TIRQRFWPVSGYHKLDALTRILE 241
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
D +I F+ + KLEARG A L GD+ + R T+++ + G++ +LV
Sbjct: 242 VEDFDGMIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+++ARGLDV V+N D+P D Y HR GRTGR GR G +
Sbjct: 302 TDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAI 346
>gi|440731079|ref|ZP_20911124.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
gi|440375088|gb|ELQ11802.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas translucens DAR61454]
Length = 653
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 215/430 (50%), Gaps = 64/430 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL P +++ + G+ P+ +Q+A IP++L D++ Q+ TG+GKT A+ LPILS+
Sbjct: 11 FADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSR 70
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + K +A+++AP+REL +Q+ + V + GG
Sbjct: 71 LDFNQRKP-------------QALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQP 117
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+Q AL++ +VVGTPGR+ + G L R LVLDE DE+L F + + +
Sbjct: 118 YVQQLSALKRGV-HVVVGTPGRVIDHLERGTLDLSELRTLVLDEADEMLRMGFIDDVEAV 176
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + A RQ + SAT+P ++ R A+++ +DP A+ +I
Sbjct: 177 LKK-----------------LPASRQVALFSATMPTAIKRIAQTYLNDP----AEVII-- 213
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S +++++N++ + Y+ V+ L HK+D L R +
Sbjct: 214 --------------ASKTTTSANIR------------QRYWAVSGL-HKLDALTRILEVE 246
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+I F + KL+ARG+ AA ++GD+ + R +++ K+G++ +LV +
Sbjct: 247 PFDAMIVFARTKAATDELAQKLQARGLAAAAINGDIQQSQRERVIQQLKDGKLDILVATD 306
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLDV V+N D+P D+ Y HR GRTGR GR G + E +++ +++
Sbjct: 307 VAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPREKGMLRAIERA 366
Query: 532 LAVPIQACEF 541
PI+ +
Sbjct: 367 TRQPIEEMQL 376
>gi|359456199|ref|ZP_09245387.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20495]
gi|358046759|dbj|GAA81636.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20495]
Length = 442
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/409 (31%), Positives = 198/409 (48%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ + KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F E + I
Sbjct: 113 FNDQIKALR-NDPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E R RQT++ SAT+ + + A ++N+
Sbjct: 172 NEQANHRL----------------RQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P + S +N Q Q+L Y L HK L ++
Sbjct: 202 ----------LKKPKQITLSAANEQHSDIKQTL-------YLADHLDHKEALLEHFLNQD 244
Query: 412 DAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D I F ++T +L +A L A+G K+ L GDL + R + F ++L+
Sbjct: 245 DVGQCIIFTATRSDTSRLSEA---LNAKGFKSVALAGDLTQSKRLDIMDSFSRENFKILI 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G +S+
Sbjct: 302 TTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLV 350
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 199/410 (48%), Gaps = 69/410 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N+F + GL P +L+ + GF T +Q+ +IP L D++ Q+ TG+GKT A+ LP++
Sbjct: 2 NTFADFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--V 227
+K+ +D+ I A+++ P+REL +Q+ EI KL S K + L
Sbjct: 62 NKIPKEEDR-------------IVALVMTPTRELAIQVAEEIGKL---SRFKGTRSLPIY 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + RQ AL+K KP I++GTPGR+ + + + +VLDE DE+L F +
Sbjct: 106 GGQDIVRQIRALKK-KPQIIIGTPGRLLDHINRKTIKLDDVKTVVLDEADEMLDMGFMDD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I++ V P+ +RQT++ SAT+P ++ + A+ + +P V +
Sbjct: 165 IQSILKLV----------PE-------DRQTMLFSATMPANIQKLAQQFLKNPEHV---S 204
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
VIP Q P + Y + K D L R
Sbjct: 205 VIP------------------------------KQVSAPLIDQAYIEVHERQKFDALTRL 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F R++ + L+ +G A LHGDL + R ++KF++G + VL
Sbjct: 235 LDMESPELAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
V +++ARGLDV+ VVN DLP D Y HR GRTGR G+ G S
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFV 344
>gi|395763064|ref|ZP_10443733.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 468
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/466 (30%), Positives = 209/466 (44%), Gaps = 75/466 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGL P ++ L G+ PT VQS AIP+ ++ D+++ S TGSGKT A++LP L
Sbjct: 2 TFESLGLHPSIIAALTESGYTAPTAVQSQAIPAAIEGRDLLVSSQTGSGKTAAFMLPSLH 61
Query: 171 KVGPLKD-----------KSSNGNGESG--KKTDIEAVIVAPSRELGMQIVREIKKLLGP 217
K+ + ++S GE K + +++ P+REL +Q+ K
Sbjct: 62 KLASAEQSAAGKTPNQEMQASRARGERPRFKAAQPKMLVLTPTRELALQVTTNTDKYSSG 121
Query: 218 SDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID 277
+ ++GG +Q + L KN P I+V TPGR+ + +GK+ LVLDE D
Sbjct: 122 IRRIKAVSILGGMPYPKQMQLLAKN-PEILVATPGRLIDHMDSGKIDFSQLEILVLDEAD 180
Query: 278 ELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG 337
+L F + + +IVE A P RQT++ SAT+ V AR
Sbjct: 181 RMLDMGFIDDIEKIVE-------ATPEG----------RQTMLFSATLDGVVGNMARRIT 223
Query: 338 HDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKL 397
+PL++Q SSSN + Q + V L
Sbjct: 224 KNPLVIQV----------------------ASSSNKHENITQ----------RVHFVDDL 251
Query: 398 QHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLK 457
HK L + + F R +L G AA LHGD+ + AR+ TL
Sbjct: 252 SHKNRLLDHLLRDETLDQAVVFTATKRDADTIADRLNIAGFSAAALHGDMHQGARNRTLD 311
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+ G+V+VLV +++ARG+DV V N DLP Y HR GRTGR GR G +S+
Sbjct: 312 GMRRGQVKVLVATDVAARGIDVPTITHVFNYDLPKFPEDYVHRIGRTGRAGRNGLAISLV 371
Query: 518 EEPEVFVVKKMQ---KQLAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
E VK+++ KQL +P+ E G E +KT A R
Sbjct: 372 NHAEGMNVKRIERFTKQL-IPVNVIE--------GFEPKKTASAPR 408
>gi|332534579|ref|ZP_08410414.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|414070322|ref|ZP_11406308.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
gi|332035999|gb|EGI72478.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|410807239|gb|EKS13219.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
Length = 442
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/409 (31%), Positives = 198/409 (48%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ + KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F E + I
Sbjct: 113 FNDQIKALR-NDPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E R RQT++ SAT+ + + A ++N+
Sbjct: 172 NEQANHRL----------------RQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P + S +N Q Q+L Y L HK L ++
Sbjct: 202 ----------LKKPKQITLSAANEQHSDIKQTL-------YLADHLDHKEALLEHFLNQD 244
Query: 412 DAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D I F ++T +L +A L A+G K+ L GDL + R + F ++L+
Sbjct: 245 DVGQCIIFTATRSDTSRLSEA---LNAKGFKSVALAGDLTQNKRLDIMDSFSRENFKILI 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G +S+
Sbjct: 302 TTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLV 350
>gi|256830240|ref|YP_003158968.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256579416|gb|ACU90552.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 530
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 200/414 (48%), Gaps = 68/414 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPI 168
+F ELGL L ++ L R+GF PT +Q IP++L + D+V Q+ TG+GKT A+ LP+
Sbjct: 2 TTFSELGLSELSIQALSRKGFEEPTPIQIKTIPAVLTGDSDIVAQAQTGTGKTAAFGLPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L + P ++A+++AP+REL +Q+ E+ L G V + G
Sbjct: 62 LEMLDP-------------DVRTVQALVLAPTRELAIQVAEEVNSLRGGRTIN-VAPIYG 107
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q +L+K ++VVGTPGR+ + G L+ G RFL+LDE DE+L+ F + +
Sbjct: 108 GQSMEIQLRSLKKG-VSVVVGTPGRVLDHLRRGSLNLSGIRFLILDEADEMLNMGFLDDV 166
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+E E++T++ SAT+P ++R A+ + D +++A
Sbjct: 167 LEIMEQTA-----------------TEKRTMLFSATMPPEILRIAKKYMGDYQIIKA--- 206
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ L A Q DQ Y + K + L R +
Sbjct: 207 ----------------------VSEQLTATQTDQ--------IYFEVAMSDKFEALCRII 236
Query: 409 HALDAQTVIAFMNNTRQLKDAVF-KLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
++ T+ DAV +L RG +A LHGD+ + R L KFK V +L
Sbjct: 237 D-MEPDFYGLVFTRTKIDADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTIL 295
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
V +++ARG+DV + V+N DLP D Y HR GRTGR G++G ++ E
Sbjct: 296 VATDVAARGIDVHDLTHVINFDLPHDPEAYVHRIGRTGRAGKQGIAITFITPSE 349
>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
Length = 587
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 206/431 (47%), Gaps = 64/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L + +L+ L G+ P+ +Q+A IP +L +DVV + TG+GKT A+ +PILS
Sbjct: 12 TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ L KS +A+++AP+REL +Q+ K V + GG
Sbjct: 72 KID-LTQKSP------------QALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQ 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ +VVGTPGR+ + G L +LVLDE DE+L F+E + R
Sbjct: 119 SYGVQLSGLRRGA-HVVVGTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVER 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ P+ +Q + SAT+P ++ + ++ + HDP+ + K
Sbjct: 178 ILSDT----------PEY-------KQVALFSATMPGAIRKISKQYLHDPVEITVK---- 216
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S +S+ SN+ + Y Q K+D L R +
Sbjct: 217 ----------------SKTSTASNISQR-------------YVQVAHQRKLDALTRVLEV 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D +I F+ + +D +L +RG AA ++GD+ + R T+ + K+G + +LV
Sbjct: 248 EDFGAMIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVAT 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E ++K ++K
Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEK 367
Query: 531 QLAVPIQACEF 541
P+ +
Sbjct: 368 ATRQPLAEMQL 378
>gi|380302038|ref|ZP_09851731.1| DNA/RNA helicase, superfamily II [Brachybacterium squillarum M-6-3]
Length = 594
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/432 (31%), Positives = 212/432 (49%), Gaps = 59/432 (13%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P + +F + + ++E L +G P +QS +P LK D++ Q+ TG+GKTL +
Sbjct: 40 PVVSETFADFDVREDIVEALSSKGIIHPFPIQSMTLPVALKGRDIIGQAKTGTGKTLGFG 99
Query: 166 LPIL-SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224
+P+L S V P +D N G K +A++V P+REL +Q+ +++ S K+ V+
Sbjct: 100 IPLLQSTVAPGED---NPTGRVIGKP--QALVVLPTRELAVQVAEDLQDA---SAKRPVR 151
Query: 225 QLV--GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GG Q EAL K +VVGTPGR+ ++ L R VLDE DE+L
Sbjct: 152 ILTVYGGRAYEPQIEALEKGVD-VVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDL 210
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F E + +++ A+ +RQT++ SAT+P ++ AR + P
Sbjct: 211 GFLEDIEKLLR-----------------AVPEKRQTMLFSATMPGPILALARRFMTQPTH 253
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
++A + PG++S + KQ Y +L K++
Sbjct: 254 IRAHD-----------PGDVS--------RTKADIKQV----------VYRAHQLD-KIE 283
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L R + + I FM RQ L+ RG AA LHGDLG+ AR L+ F+NG
Sbjct: 284 VLARVLQSRGRGLTIVFMRTKRQADRVAEDLQKRGFAAAPLHGDLGQGAREQALRAFRNG 343
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+V VLV +++ARG+DV + V+N + P D Y HR GRTGR G++GT V+ + ++
Sbjct: 344 KVDVLVATDVAARGIDVDDVTHVINWNSPDDDKTYLHRTGRTGRAGKKGTAVTFVDWEDL 403
Query: 523 FVVKKMQKQLAV 534
+ +QL +
Sbjct: 404 ARWALIARQLGL 415
>gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 669
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/420 (29%), Positives = 198/420 (47%), Gaps = 64/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ++ LP L ++ GF P+ +Q+ AIP +L+ DV+ + TG+GKT A+ LP+L+
Sbjct: 85 SFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLA 144
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ P +++A+++AP+REL MQ+ I V L GG+
Sbjct: 145 AIDP-------------SLREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGS 191
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
QE AL + +VVGTPGR+ + L R VLDE DE+L F E +
Sbjct: 192 PYGPQERALARGA-QVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEE 250
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ H P + RQ + SAT+P ++ R A++ DP+ V
Sbjct: 251 ILSH----------SPDT-------RQVALFSATMPAAIQRVAQTHMQDPVRV------- 286
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S S +S +++ + Y V +H+ L R +
Sbjct: 287 ----------------SVSPQSSTVKS----------VHQTYAVVPFRHRTGALARVLAT 320
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
DA+ I F+ ++ L RG+ AA + GD+ + R +++ ++G ++VLV
Sbjct: 321 SDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVAT 380
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV LVVN D+P ++ Y HR GRTGR GR G ++ E +K +++
Sbjct: 381 DVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNIER 440
>gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
Length = 627
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 209/450 (46%), Gaps = 69/450 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL L L + GF PT VQ+A IP++L DV+ ++ TG+GKT A+ LP++
Sbjct: 6 SFAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLID 65
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ P + + ++A+I+AP+REL Q+ ++ D + + GG
Sbjct: 66 SIDPAQRR-------------VQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQ 112
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q ALR +VVGTPGR+ + G L R +VLDE DE+L F E +
Sbjct: 113 PMGVQIRALRDGA-QVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEW 171
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+E AERQT + SAT+P + R A +P ++
Sbjct: 172 ILEQTP-----------------AERQTTLFSATMPAPIRRIAHRHMREPQEIR------ 208
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH- 409
G GN +G DQS YC+ +HK + L R +
Sbjct: 209 ------IGAGNEAG-------------TDIDQS--------YCLVDQRHKTEALGRMIEV 241
Query: 410 --ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
LDA I F + L A+G++++ L+GD+ + R + ++G + V+
Sbjct: 242 EAGLDA--AIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVI 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+DV V N D P D+ Y HR GRTGR GR+G + E + +++
Sbjct: 300 VATDVAARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRD 359
Query: 528 MQKQLAVPIQACEFTEGRLVIGKEEEKTLE 557
+++ P++ + + VI + EE+ E
Sbjct: 360 IERLTGKPVREQKVPDRAAVIARREERLAE 389
>gi|359441576|ref|ZP_09231469.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20429]
gi|392532799|ref|ZP_10279936.1| DEAD/DEAH box helicase [Pseudoalteromonas arctica A 37-1-2]
gi|358036596|dbj|GAA67718.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20429]
Length = 442
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 130/409 (31%), Positives = 198/409 (48%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ + KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F E + I
Sbjct: 113 FNDQIKALR-NDPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E R RQT++ SAT+ + + A ++N+
Sbjct: 172 NEQANHRL----------------RQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P + S +N Q Q+L Y L HK L ++
Sbjct: 202 ----------LKKPKQITLSAANEQHSDIKQTL-------YLADHLDHKEALLEHFLNQD 244
Query: 412 DAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D I F ++T +L +A L A+G K+ L GDL + R + F ++L+
Sbjct: 245 DVGQCIIFTATRSDTSRLSEA---LNAKGFKSVALAGDLTQNKRLDIMDSFSRENFKILI 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G +S+
Sbjct: 302 TTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLV 350
>gi|440747418|ref|ZP_20926677.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
gi|436484338|gb|ELP40342.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
Length = 607
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 196/407 (48%), Gaps = 66/407 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ +L +E G+ P+ +Q+ IP +L+ DV+ Q+ TG+GKT A+ +PI+ +
Sbjct: 7 FSDLGVSEEILRAVEDMGYTHPSPIQAQTIPMLLEGKDVIGQAQTGTGKTAAFAIPIIDQ 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V K +A+I+ P+REL +Q+ EI KL + + GG +
Sbjct: 67 VDVTLYKP-------------QALILCPTRELAVQVEGEIVKLSKFKKGLSSTCIYGGDS 113
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ L+K +VVGTPGRI + G L +VLDE DE+L FRE + I
Sbjct: 114 MDRQIRDLKKG-VQVVVGTPGRIMDHMDRGTLKLDHVGIIVLDEADEMLDMGFREDIESI 172
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA-KNVIP 350
+ P+ ERQT+ SAT+P ++ + + +DP +V+ K +
Sbjct: 173 LSDC----------PE-------ERQTVFFSATMPKPILDLTKKYQNDPEIVKVLKKELT 215
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+E++ YY V K K++ + R ++
Sbjct: 216 VENISQV---------------------------------YYEV-KPSLKLELMSRLMNL 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F N R + +L ARG++A LHGDL + RS + KF+ G V VLV
Sbjct: 242 NQFNLSVVFCNTKRITDEVTEELMARGIQAEALHGDLSQAQRSKVMGKFRKGHVSVLVAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARG+DV + + V N DLP D +Y HR GRTGR G+ GT +S
Sbjct: 302 DVAARGIDVNDVEAVFNYDLPLDEENYVHRIGRTGRAGKSGTAISFV 348
>gi|409200013|ref|ZP_11228216.1| DEAD/DEAH box helicase [Pseudoalteromonas flavipulchra JG1]
Length = 443
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/407 (33%), Positives = 198/407 (48%), Gaps = 60/407 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELG+ L ++L +G PTE+Q+ AIP+ L HDV QS TGSGKTLA+LLP + +
Sbjct: 3 FTELGIDTRLEQQLAHQGITEPTEIQAHAIPTALAGHDVFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D VIVAP+REL Q+ E + L ++ + V +++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVVIVAPTRELATQVFSECRALCAGTNLQ-VCKILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR++ P VVGTPGRIA+ L G L+ DE D + F + + I
Sbjct: 113 YNDQVKALRRD-PHFVVGTPGRIADHVENRSLFLGGLELLIFDEADRMFDLGFEKQLDVI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R +RQT++ SAT+ + + A+ LL K ++
Sbjct: 172 NDSADHR----------------QRQTLLFSATLDHTQVEASSRQ----LLKSPKRIM-- 209
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
SN++ Q + Q+L Y L HK L+ +
Sbjct: 210 ------------------LSNAHQQHEDIKQAL-------YFADHLDHKEALLKHFITQD 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKL-EARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D I F TR D + KL +KA L GD+ + R ++ F G +VLVT
Sbjct: 245 DVGQCIIF-TATRGDTDRLSKLLNEMSIKAVSLSGDMPQNKRLDIMESFSRGIYKVLVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++++RGLD+ V+N DLP + Y HR GRTGR G +GT +S
Sbjct: 304 DVASRGLDLLSVTHVMNFDLPKQAEEYVHRIGRTGRAGFKGTAISFV 350
>gi|392547534|ref|ZP_10294671.1| DEAD/DEAH box helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 443
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 194/409 (47%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELGL ++LE +G PTE+Q+ AIP+ L HD QS TGSGKTLA+LLP + +
Sbjct: 3 FSELGLDLRFEKQLEHQGITTPTEIQAQAIPTALAGHDTFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ + + L+ + + +++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFNQCRLLIAGT-AMSCTKVLGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALRK+ P V+GTPGRI + L HG L+ DE D +L F + + I
Sbjct: 113 FNDQVKALRKD-PHFVIGTPGRITDHIEQRSLQLHGLELLIFDEADRMLDLGFEKQLSTI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT++ SAT+ + + LL K ++
Sbjct: 172 NNAADHRL----------------RQTLLFSATLEHAQVEITSR----DLLKSPKRIL-- 209
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+SGS+ + +QA Y L HK L+ V
Sbjct: 210 --------------LSGSNEKHD-DIRQA----------MYFADHLDHKEALLQHFVQQS 244
Query: 412 DAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D + I F +T + D + +L G+KA L GDL + R + F G +VLV
Sbjct: 245 DVKQCIIFTATRQDTNRFSDMLNEL---GIKAVALAGDLAQSKRLDIMDAFSRGLFKVLV 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G +S
Sbjct: 302 TTDVASRGLDLLNVSHVINFDLPKQAEEYVHRIGRTGRAGFKGDAISFV 350
>gi|334137246|ref|ZP_08510689.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
gi|333605235|gb|EGL16606.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
Length = 535
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 202/414 (48%), Gaps = 69/414 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F E L +++ + GF T +Q IP ++ HD++ Q+ TG+GKT A+ +P++S
Sbjct: 3 NFSEFDLDAKVIKAITEMGFEESTPIQEKTIPLAIEGHDLIGQAQTGTGKTAAFGIPLVS 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ P +DK I A+I+ P+REL +Q+ E+ KL K ++ L G
Sbjct: 63 KIEPSEDK-------------IVALIMCPTRELAIQVAEEVSKL---GRFKGIRSLPIYG 106
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + +Q AL+K +P I++GTPGR+ + + + +VLDE DE+L F + +
Sbjct: 107 GQDIGKQIRALKK-RPQIIIGTPGRLLDHINRKTIKLEDVKTVVLDEADEMLDMGFMDDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ V AER T++ SAT+P ++ + A+ + +P Q +V
Sbjct: 166 QSILSLVP-----------------AERHTMLFSATMPPNIQKLAQQFLTNP---QHVSV 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
I P ++S P+ DQ+ Y + K + L R +
Sbjct: 206 I---------PKHVSAPL-------------IDQA--------YVEVHEKQKFEALSRLI 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F R++ + L+ RG A LHGDL + R ++KF++G + VLV
Sbjct: 236 DMESPELAIVFGRTKRRVDELAEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIEVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARGLDV+ VVN DLP D Y HR GRTGR G+ GT + E+
Sbjct: 296 ATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREI 349
>gi|392544521|ref|ZP_10291658.1| DEAD/DEAH box helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 443
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/407 (33%), Positives = 198/407 (48%), Gaps = 60/407 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELG+ L ++L +G PTE+Q+ AIP+ L HDV QS TGSGKTLA+LLP + +
Sbjct: 3 FTELGIDTRLEQQLAHQGITEPTEIQAHAIPTALAGHDVFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D VIVAP+REL Q+ E + L ++ + V +++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVVIVAPTRELATQVFSECRALCAGTNIQ-VCKILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR++ P VVGTPGRIA+ L G L+ DE D + F + + I
Sbjct: 113 YNDQVKALRRD-PHFVVGTPGRIADHVENRSLFLGGLELLIFDEADRMFDLGFEKQLDVI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R +RQT++ SAT+ + + A+ LL K ++
Sbjct: 172 NDSADHR----------------QRQTLLFSATLDHTQVEASSRQ----LLKSPKRIM-- 209
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
SN++ Q + Q+L Y L HK L+ +
Sbjct: 210 ------------------LSNAHQQHEDIKQAL-------YFADHLDHKEALLKHFITQD 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKL-EARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D I F TR D + KL +KA L GD+ + R ++ F G +VLVT
Sbjct: 245 DVGQCIIF-TATRGDTDRLSKLLNEMSIKAVSLSGDMPQNKRLDIMESFSRGIYKVLVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++++RGLD+ V+N DLP + Y HR GRTGR G +GT +S
Sbjct: 304 DVASRGLDLLSVTHVMNFDLPKQAEEYVHRIGRTGRAGFKGTAISFV 350
>gi|363582070|ref|ZP_09314880.1| DEAD/DEAH box helicase domain-containing protein [Flavobacteriaceae
bacterium HQM9]
Length = 596
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 209/429 (48%), Gaps = 65/429 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPIL 169
+F LGL LL+ ++ GF P+EVQ+ AIP +L ++ D+V + TG+GKT A+ P++
Sbjct: 3 TFKTLGLGEALLQAIDAMGFVEPSEVQAKAIPILLEQDTDIVALAQTGTGKTAAFGFPLI 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
K+ P S KKT + +I++P+REL +QI +EIK K + GG
Sbjct: 63 EKIDP-----------SSKKT--QGLILSPTRELCLQIAQEIKNYSKFIPKLNSVAVYGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A+ Q +++ I+V TPGR+ ++ G + + VLDE DE+L+ F E +
Sbjct: 110 ASIHDQARDIKRG-AQIIVATPGRMQDMINRGLVDISQIGYCVLDEADEMLNMGFYEDIT 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I+ H P E+ T + SAT+P V A+ + +P+ +
Sbjct: 169 KILSHT----------PD-------EKSTWLFSATMPREVATIAKKFMSNPVEITVG--- 208
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S +SSN N+ KH Y V + + TL+R
Sbjct: 209 -----------------SKNSSNKNV-------------KHEYYVVSARDRYPTLKRLAD 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A + + F R + KL G AA LHGDL + R +K F+N ++++LV
Sbjct: 239 ANPSIFAVIFCRTKRDTQSIAEKLIEDGYSAAALHGDLSQNQRDLVMKSFRNRQIQMLVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV + V+N LP ++ Y HR+GRTGR G+ G + I + +V +K ++
Sbjct: 299 TDVAARGIDVNDITHVINYQLPDENETYNHRSGRTGRAGKDGVSIVITTKSDVRKIKSLE 358
Query: 530 KQLAVPIQA 538
+ L +A
Sbjct: 359 RTLQTTFEA 367
>gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
Length = 420
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/435 (31%), Positives = 211/435 (48%), Gaps = 71/435 (16%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
S+PF +FL+LG+ P L+E L G PTE+Q AIP +L HDV+ + TG+GKT A
Sbjct: 2 SSPF--KTFLDLGIAPTLVESLNALGIETPTEIQIQAIPPVLAGHDVLAGAQTGTGKTAA 59
Query: 164 YLLPILSKVGPLK---DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
+ LP+L ++ K D SS DI A+++ P+REL Q+ + S+
Sbjct: 60 FGLPLLQRLAASKTDVDVSSK---------DIRALVLVPTRELAQQVFDSLTAYAKGSEL 110
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
K V GG + S Q++ LR +++ TPGR+ + + L+ + LVLDE D +L
Sbjct: 111 KVVVA-YGGTSMSVQKQHLRGGAD-VLIATPGRLLDHAHVKSLYLGNVQTLVLDEADRML 168
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
F + R++ + R RQT+ SAT + A H+P
Sbjct: 169 DMGFMPDIQRVLRKLNR-----------------ARQTLFFSATFDQKIKALAYRMMHEP 211
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+ VQ V P +N A Q + P K + K
Sbjct: 212 IEVQ---VTP----------------------ANTTADTVSQMVYPVDK--------KRK 238
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKF 459
+ L + + + Q V+ F T+Q DA+ + L+ G+KAA ++GD + AR L F
Sbjct: 239 SELLAYLIGSRNWQQVLVF-TKTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDF 297
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC-- 517
K G++R L+ +++ARG+D+ + + VVN DLP + Y HR GRTGR G+ G VS+
Sbjct: 298 KAGKIRALIATDVAARGIDICQLEQVVNFDLPYKAEDYIHRIGRTGRAGQSGLAVSLMSP 357
Query: 518 -EEPEVFVVKKMQKQ 531
EEP + ++++ Q
Sbjct: 358 QEEPLLQAIERLLDQ 372
>gi|408674498|ref|YP_006874246.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387856122|gb|AFK04219.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 576
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/449 (27%), Positives = 217/449 (48%), Gaps = 64/449 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L + +L +E GF T +QS IP++L+ DV+ Q+ TG+GKT A+ +P +
Sbjct: 6 FSDLPVSEYILRAVEEMGFEFSTPIQSQGIPAVLRGGDVIGQAQTGTGKTAAFGIPAIEA 65
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V ++DK++ + +++ P+REL +Q+ +I+KL V + GG +
Sbjct: 66 V-DVEDKNT------------QVLVMCPTRELALQVKEQIQKLAKYKKGLHVAAIYGGES 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ AL+K IVVGTPGRI + L + +LDE DE+L+ FRE + +I
Sbjct: 113 YERQFLALKKG-VQIVVGTPGRIMDHIDRKTLSLSSIKMAILDEADEMLNMGFREDIEKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + P ERQT++ SAT+ ++ A+ + DP +++
Sbjct: 172 LSYA----------PD-------ERQTVLFSATMSPEILSIAKRFQKDPEVIRT------ 208
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ SN+N++ ++ + + K++ + R +
Sbjct: 209 --------------VKTEISNANIE-------------QFFFPVRREAKMEVMTRLIDVN 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + ++ F N ++ + V +L+ RG A LHGD+ + R+ + KF+ G +LV +
Sbjct: 242 NLKLMLVFANTKSKVDEIVSELQIRGYAAEGLHGDMRQQVRTQVMNKFRAGTTTILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARG+DV+ D V N D+P D +Y HR GRTGR G+ G E +++++
Sbjct: 302 VAARGIDVSGVDAVFNYDVPQDLEYYVHRIGRTGRAGKTGKAFMFISGREKSRLREIEYY 361
Query: 532 LAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
V I+ + +I +K +E VR
Sbjct: 362 TKVKIEQGQIPTLAELIKTRHQKFVEQVR 390
>gi|451823382|ref|YP_007459656.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776182|gb|AGF47223.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 480
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 200/419 (47%), Gaps = 59/419 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ P ++ ++ GF PT VQ+A IP + D+V+ + TGSGKT A++LPIL+
Sbjct: 2 SFENLGINPNIISAIKATGFESPTPVQNATIPKAILRQDLVVSAQTGSGKTAAFILPILN 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ + KSSN T I+ +I+ P+REL MQI + + +VGG
Sbjct: 62 HLSQMP-KSSN--------TAIQVLILTPTRELAMQITKAASSYGSNFHWLRMATIVGGM 112
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL K + I+V TPGR+ + +G+++ LVLDE D +L F E +
Sbjct: 113 PYQSQIKALSK-RIDILVATPGRLIDQMQSGRVNLKSVHTLVLDEADRMLDMGFIEDIQN 171
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IV H+ PK ERQT++ SAT+ S++ A+ ++P + N
Sbjct: 172 IVSHL----------PK-------ERQTMLFSATLDNSIMNLAKQMMNNPERISLTN--- 211
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S+SN++ K V HK+ L+ ++
Sbjct: 212 -----------------NKQSHSNIEQK------------LIYVDDNHHKIRVLQHLLNK 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + F + R + L G A LHGD+ + R+ TL + + ++++L+
Sbjct: 243 NDLDQAVVFTSTKRGADELANHLADIGFAVAALHGDMNQRQRTRTLAQLQKKQLKILIAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ +N DLP + Y HR GRTGR GR G +++ E +++++
Sbjct: 303 DVAARGIDIQGISHAINFDLPMQAEDYIHRIGRTGRAGRNGEALTLASHSEKHKIRRIE 361
>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
Length = 557
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 207/438 (47%), Gaps = 54/438 (12%)
Query: 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
E + +A +F + G+ P + + L +G P +Q+ +P L DV+ Q+ TG+GK
Sbjct: 51 EGDETDLSAKTFADFGVEPEISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGK 110
Query: 161 TLAYLLPIL-SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSD 219
TL + +P+L +GP G E +A++V P+REL Q+ E+ +
Sbjct: 111 TLGFGIPLLMDTLGP----GEEGWDEDPASGSPQALVVLPTRELAKQVATELAQAAAKRT 166
Query: 220 KKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDEL 279
+ VQ + GG Q EAL K +VVGTPGR+ ++ G L +VLDE DE+
Sbjct: 167 VRIVQ-VYGGRAYEPQIEALEKGA-EVVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEM 224
Query: 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
L F + +I+ R +RQT++ SAT+P +V+ AR +
Sbjct: 225 LDLGFLPDVEKILART-----------------RPDRQTMLFSATMPGAVVALARRYMSK 267
Query: 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH 399
P ++A++ PG+ S M+ +S +K T +
Sbjct: 268 PTHIRAQD-----------PGDES--MTVTS-----------------VKQVVYRTHALN 297
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
KV+ + R + A I F R L +RG A LHGDLG+ AR L+ F
Sbjct: 298 KVEVVSRILQARGRGRTIIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQALRAF 357
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
++G+V VLV +++ARG+DV + V+N P D Y HR GRTGR G GT V+ +
Sbjct: 358 RHGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGHSGTAVTFVDW 417
Query: 520 PEVFVVKKMQKQLAVPIQ 537
+V + + K L +P++
Sbjct: 418 DDVPRWRLIAKALGLPVE 435
>gi|428211079|ref|YP_007084223.1| DNA/RNA helicase [Oscillatoria acuminata PCC 6304]
gi|427999460|gb|AFY80303.1| DNA/RNA helicase, superfamily II [Oscillatoria acuminata PCC 6304]
Length = 484
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 135/422 (31%), Positives = 208/422 (49%), Gaps = 71/422 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +++LE+ GF P+ +Q AIP ++ DV Q+ TG+GKT A+ LPIL
Sbjct: 4 SFQSLGLSEERVQQLEKLGFTEPSPIQEQAIPKLMAGQDVAGQAQTGTGKTAAFSLPILE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVG 228
++ + DK +++A+I+AP+REL +Q+ I++L +D + V+ + G
Sbjct: 64 QMD-VNDK------------NVQALILAPTRELAIQVSNAIREL---TDDRRVRIFAVYG 107
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G++ RQ + L + IVVGTPGR+ ++ G L LVLDE DE+LS F + +
Sbjct: 108 GSSIERQIQRLERGV-QIVVGTPGRVLDLLNRGHLKLDTLTHLVLDEADEMLSMGFIDDV 166
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I+ R PK +RQT SAT+ S+ + + DP+ V+ +
Sbjct: 167 EKIL----------ARAPK-------DRQTAFFSATMEPSIRKLMNKFMRDPVTVK---I 206
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+S P KQ DQ + Y V + K L +
Sbjct: 207 DQQKSTP----------------------KQIDQVI-------YMVPRGWSKSRALLPIL 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D +T I F+ R + +L+A G E HGDL + R + +F+ +VR +V
Sbjct: 238 ELEDPETAIVFVRTRRAAAELTSQLQAAGHSVDEYHGDLNQSQRERLIDRFRKQQVRWIV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLDV V+N DLP Y HR GRTGR GR GT +S+ + F +K+
Sbjct: 298 ATDIAARGLDVDHLTHVINYDLPDQVESYVHRIGRTGRAGREGTAISLIQP---FDRRKL 354
Query: 529 QK 530
Q+
Sbjct: 355 QQ 356
>gi|392308571|ref|ZP_10271105.1| DEAD/DEAH box helicase [Pseudoalteromonas citrea NCIMB 1889]
Length = 454
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 199/409 (48%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELG+ L +L +G PTE+QS A+P+ + HDV QS TGSGKTLA+LLP + +
Sbjct: 16 FTELGIDTRLEAQLAHQGITSPTEIQSQAVPTAIAGHDVFAQSKTGSGKTLAFLLPAIHR 75
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K ++ + K D +I+AP+REL Q+ + + LL +V +++GG N
Sbjct: 76 V--MKQRALS-------KRDPRVLIIAPTRELATQVFSQCR-LLVAGTSISVVKVLGGEN 125
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALRK+ P IV+G+PGRIA+ L G LV DE D +L F ++ I
Sbjct: 126 FNDQVKALRKD-PQIVIGSPGRIADHLEQRSLQLSGLELLVFDEADRMLDLGFAPQLNLI 184
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E R RQT++ SAT+ H + V ++N+
Sbjct: 185 NEQANHRL----------------RQTLLFSATL-----------DHAQVEVTSRNL--- 214
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P S+++ Q Q+L Y L HK L+ V
Sbjct: 215 ----------LRSPKKIILSDAHQQHGDIKQTL-------YFADHLDHKDALLKHFVTQD 257
Query: 412 DAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F N+T ++ + +L G+KA L GDL + R + F G +VLV
Sbjct: 258 NVGQCIIFTATRNDTVRISE---QLNTLGIKAVALAGDLAQNKRLDIMDTFSRGLFKVLV 314
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +GT +S+
Sbjct: 315 TTDVASRGLDLLSVTHVINFDLPKQAEEYVHRIGRTGRAGFKGTAISLV 363
>gi|359419518|ref|ZP_09211469.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
gi|358244479|dbj|GAB09538.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
Length = 569
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 126/420 (30%), Positives = 199/420 (47%), Gaps = 64/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LG+ + L+ G+ P+ +Q+A IP ++ DVV + TG+GKT A+ +PILS
Sbjct: 8 SFDDLGIDDRVRRALDDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILS 67
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ S +K +A+++AP+REL +Q+ + + V + GG
Sbjct: 68 RLD-----------TSARKP--QALVLAPTRELALQVAEAFGRYAAHIPELRVLPIYGGQ 114
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ ++VGTPGR+ + G L FLVLDE DE+L+ F E + R
Sbjct: 115 SYGVQLSGLRRGA-QVIVGTPGRVIDHLDKGTLDISELEFLVLDEADEMLTMGFAEDVER 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ P S +Q + SAT+P ++ R A+ + HDP V K
Sbjct: 174 ILADT----------PDS-------KQVALFSATMPKAIGRLAQKYLHDPAEVTVK---- 212
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S +S+ N+ K Y Q K+D L R +
Sbjct: 213 ----------------SKTSTAQNITQK-------------YLQVSHQRKLDALTRVLEV 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+I F+ ++ KL ARG+ A ++GD+ + R T+ + K G + +LV
Sbjct: 244 EQFDGMIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTINQLKEGSLDILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR GT + E +++ ++K
Sbjct: 304 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAIEK 363
>gi|254425310|ref|ZP_05039028.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
gi|196192799|gb|EDX87763.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
Length = 471
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 214/452 (47%), Gaps = 66/452 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+SF +LGL +E L + GF PT +Q AIP +L HDVV + TG+GKT A+ LP+L
Sbjct: 3 SSFADLGLSSACVEHLTQIGFTEPTAIQIQAIPQLLSGHDVVGLAQTGTGKTAAFSLPML 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKK-AVQQLVG 228
+V P ++A+++ P+REL MQ+ + ++ +DK+ V + G
Sbjct: 63 EQVNPANRY-------------VQALVLTPTRELAMQVSQAMESF--NTDKRLYVTSVYG 107
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ + L++ IVVGTPGRI ++ G L +VLDE DE+L+ F + +
Sbjct: 108 GQSIDRQIQRLKRGS-QIVVGTPGRIIDLIERGGLVLDRLSIMVLDEADEMLNMGFIQDV 166
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ H P ERQT SAT+ ++ + + + P+ V +
Sbjct: 167 ETILSHT----------PD-------ERQTAFFSATMEPAIQKLSTRFLKSPVTVSVE-- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ ++S + KQ ++PP K L +
Sbjct: 208 --------------------AKTSSTARIKQIAYTVPPGWS----------KPRALMPIL 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D ++ I F+ R + +L+A G A E HGDL + R L++FK +VR +V
Sbjct: 238 EMEDPESAIIFVRTRRTAAELTRQLQAAGHSADEYHGDLTQPQRERLLQRFKQRQVRWVV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+ V + V+N +LP + Y HR GRTGR G+ G VSI E + + ++
Sbjct: 298 ATDIAARGIHVDDLSHVINYELPDNLDSYVHRIGRTGRAGKEGRAVSIVMTLEKYKLSRI 357
Query: 529 QKQLAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
+K+ ++ C+ + + EK VR
Sbjct: 358 EKRFKKSVEYCKIPTQAQIAARHLEKLQARVR 389
>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 540
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 205/434 (47%), Gaps = 52/434 (11%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF + + P ++ L G P +Q+ +P L HD++ Q+ TG+GKTL + +P+L
Sbjct: 33 QSFSDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPLL 92
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+KV D +G GK +A+ VAP+REL +Q+ ++++ G + V + GG
Sbjct: 93 NKVIARGDDKWDGFVHKGKP---QALAVAPTRELAVQVSADLERA-GKARGIRVLTVYGG 148
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q +AL K +VVGTPGR+ +++ G L + +VLDE DE+L F +
Sbjct: 149 RAYEPQIDALTKGVE-VVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVE 207
Query: 290 RIVEHVGRRSGANPREPKSALAMRAE-RQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
++ LAM + RQT++ SAT+P +V+ AR + P ++A
Sbjct: 208 KL------------------LAMTSPGRQTMLFSATMPGAVVALARRYMTQPTHIRAMQ- 248
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
G G+ S Q++ +H Y + KV+ L R +
Sbjct: 249 --------EGEGDTS------------------QTVKAITQHVYRAHAMD-KVEMLARML 281
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A I F R L RG AA +HGDLG+ AR L+ F++G+V VLV
Sbjct: 282 QANGRGLTIVFSRTKRTAAKVADDLAERGFAAAAIHGDLGQGAREQALRAFRSGKVDVLV 341
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+DV V+N P D Y HR GRTGR G+ G V+ + ++ +
Sbjct: 342 ATDVAARGIDVENVTHVINYQCPEDEKTYVHRIGRTGRAGQTGIAVTFVDWDDLHRWTMI 401
Query: 529 QKQLAVPIQACEFT 542
K L + I E T
Sbjct: 402 NKTLDLGIPDPEET 415
>gi|451972716|ref|ZP_21925920.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
gi|451931409|gb|EMD79099.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
Length = 443
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 207/433 (47%), Gaps = 60/433 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F PT++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVGGA 230
LK KS + D AVI+AP+REL Q+ E++ +L G S + A+ ++GG
Sbjct: 63 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLAGLSYEAAL--ILGGE 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + Q +ALR+ P +V TPGR+A+ L+ G L+LDE D +L F + R
Sbjct: 112 NFNDQVKALRRY-PKFIVATPGRLADHLEHRSLYLEGLETLILDEADRMLDLGFAPELRR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + R RQT+M SAT+ + + N I
Sbjct: 171 IHKAAKHR----------------RRQTLMFSATLDHADV----------------NDIA 198
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 199 AEM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILDRVLSE 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT
Sbjct: 244 AEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+A V+N D+P + Y HR GRTGR G +G +S+ + K+++
Sbjct: 304 DVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEA 363
Query: 531 QLAVPIQACEFTE 543
L ++ F +
Sbjct: 364 YLQQDLEFSVFED 376
>gi|442611149|ref|ZP_21025855.1| ATP-dependent RNA helicase VCA0061 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441747077|emb|CCQ11917.1| ATP-dependent RNA helicase VCA0061 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 444
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 138/442 (31%), Positives = 214/442 (48%), Gaps = 67/442 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L ++L +G PTE+Q+ AIP+ L HDV QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDNRLAKQLSHQGIVEPTEIQARAIPTALAGHDVFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D ++V P+REL Q+ + + L+ S +V +++GG N
Sbjct: 63 V--IKQKALS-------KRDPRVLVVTPTRELANQVYAQCRMLIA-SHTLSVTKILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +AL KN P V+GTPGRIA+ + + G L+ DE D +L F+ + I
Sbjct: 113 FNDQVKALAKN-PHFVIGTPGRIADHLSQRSMQLQGLEMLIFDEADRMLDLGFKAQLDAI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E R RQT++ SAT+ H + V ++N+
Sbjct: 172 NEAADHRL----------------RQTLLFSATL-----------DHAEVGVTSRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P S S+++ + + Q+L Y L HK L + +
Sbjct: 202 ----------LKAPKSIMLSDAHEKHEDITQTL-------YLADHLDHKQALLTHFMKSE 244
Query: 412 DAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
I F ++T +L D L + + AA L GD+ + R + F G+ +VLV
Sbjct: 245 AVGQCIIFTATRSDTSRLSDL---LNEQQLNAAALAGDMPQNKRLEIMDAFSRGQFKVLV 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
T ++++RGLD+ V+N DLP + Y HR GRTGR G +GT +S + +
Sbjct: 302 TTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGTAISFVGPKDWKSYLAI 361
Query: 529 QKQLAVPIQACEFTEGRLVIGK 550
Q L P+ EFT+ + ++GK
Sbjct: 362 QSYLKDPL---EFTQIQGLVGK 380
>gi|407718005|ref|YP_006795410.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc carnosum JB16]
gi|407241761|gb|AFT81411.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc carnosum JB16]
Length = 455
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 196/411 (47%), Gaps = 64/411 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
AAN F + L P ++ L GF PT VQ+ IP +L+ DVV QS TGSGKT +L+P
Sbjct: 4 AANQFGQFNLKPEIISVLTAIGFTTPTPVQAKLIPDVLQGRDVVGQSQTGSGKTHTFLIP 63
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKK-AVQQL 226
I +++ ES + ++AVI PSREL QI + K D+ + +
Sbjct: 64 IFNQL------------ESDQHY-VQAVITTPSRELAAQITKATKLFAEKLDQNITISEF 110
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
VGG ++ RQ + L K +P IV+GTPGRI ++ +G L H + LV+DE D L F
Sbjct: 111 VGGTDKLRQIKQLEKQQPQIVIGTPGRIKDLVTSGALKLHAVKQLVVDEADMTLDMGFLS 170
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ I +GA P AL QT++ SAT+P + + + +P
Sbjct: 171 EVDFI-------AGAMP----EAL------QTLVFSATMPEKLKPFLKKYLDNP------ 207
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
ES+P + + + ++ TK + K D + +
Sbjct: 208 ---HFESIPVS------------------------TVIADTIDNWLLATKSKDKNDVIYQ 240
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ + + F N ++K+ L RG+K AE+HGD+ R +K +N E +
Sbjct: 241 VLTTGNPYLALVFANTKERVKNIASNLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEYQY 300
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++ +L+ARG+D+A V+N ++P + + HR GRTGR G G +++
Sbjct: 301 VIATDLAARGIDIAGVSHVINDEIPDELEFFVHRVGRTGRNGLPGLAITLY 351
>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
Length = 443
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 207/433 (47%), Gaps = 60/433 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F PT++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVGGA 230
LK KS + D AVI+AP+REL Q+ E++ +L G S + A+ ++GG
Sbjct: 63 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLAGLSYEAAL--ILGGE 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + Q +ALR+ P +V TPGR+A+ L+ G L+LDE D +L F + R
Sbjct: 112 NFNDQVKALRRY-PKFIVATPGRLADHLEHRSLYLEGLETLILDEADRMLDLGFAPELRR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + R RQT+M SAT+ + + N I
Sbjct: 171 IHKAAKHR----------------RRQTLMFSATLDHADV----------------NDIA 198
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 199 AEM--------LNSPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILDRVLSE 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT
Sbjct: 244 AEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+A V+N D+P + Y HR GRTGR G +G +S+ + K+++
Sbjct: 304 DVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEA 363
Query: 531 QLAVPIQACEFTE 543
L ++ F +
Sbjct: 364 YLQQDLEFSVFED 376
>gi|430757278|ref|YP_007210540.1| Hypotheticcal protein YfmL [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430021798|gb|AGA22404.1| Hypotheticcal protein YfmL [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 376
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 213/446 (47%), Gaps = 77/446 (17%)
Query: 103 ESAPFAAN--SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
++ PF N SF++ E GF PT VQ A I+ DV+ +S TG+GK
Sbjct: 3 QTWPFLHNAQSFIQ--------ENWNASGFQTPTPVQEQAAQLIMDGKDVIAESPTGTGK 54
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
TLAY LP+L ++ P ++ +AVI+APSREL MQI + I+ S+
Sbjct: 55 TLAYALPVLERIKP-------------EQKHPQAVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+A L+GGAN +Q E L+K+ P I+VGTPGR+ E+ A KL H + +VLDE D+L+
Sbjct: 102 RAA-SLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDEADQLI 159
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
RE + +I++ R +RQ + SAT+ R +P
Sbjct: 160 LPEHRETIKQIIKTTLR-----------------DRQLLCFSATLKKETEDVLRELAQEP 202
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+++ Q ++ +KH Y + + K
Sbjct: 203 EVLKV---------------------------------QRSKAEAGKVKHQYLICDQRDK 229
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
V L++ + L+ + F+ + L KL ++ LH + K+ R+ + F+
Sbjct: 230 VKLLQK-LSRLEGMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIAAFE 288
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
NGE +L+ +++ARGLD+ V++ D+P D Y HR+GRTGR G+ G V+S+ +
Sbjct: 289 NGEFPLLLATDIAARGLDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKL 347
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRL 546
E +KKM K+L V + + G+L
Sbjct: 348 EESKLKKMAKKLGVELSEAVYAGGKL 373
>gi|310829374|ref|YP_003961731.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
Length = 547
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/417 (27%), Positives = 203/417 (48%), Gaps = 64/417 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL + LL ++ GF TE+Q AIP +++ D++ +S TG+GKT+A+ +P + K
Sbjct: 3 FRELEINEQLLRAIDDMGFVDMTEIQERAIPRLMEGGDLIGKSQTGTGKTMAFAIPAIEK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P K + +++ P+REL +Q+ E +K+L S V + GGA+
Sbjct: 63 IDPELRKP-------------QVLVLLPTRELALQVSEEFRKVLKYSHSIKVVAVFGGAS 109
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q L K+ IVVGTPGR+ + L + VLDE DE+L+ FRE + I
Sbjct: 110 IENQIRDL-KSGAQIVVGTPGRVMDHMRRKTLKFNALTMAVLDEADEMLNMGFREDIELI 168
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ A+ + QT++ SAT+P +++ A ++ +P ++
Sbjct: 169 LD-----------------AVDHDVQTVLFSATMPKPILKIAETYQKNPTMI-------- 203
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E P T + P+++ Y Q+K + L R +
Sbjct: 204 EISPKT-------------------------MVAPSIEQKYFNISDQNKFEALTRLLDVY 238
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
Q + F N + + L+ G ++HGD+ +++R LK+F G +++LV +
Sbjct: 239 KPQRSLIFCNTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKILVATD 298
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
++ARG+DV + D+V N D+P + +Y HR GRTGR G+ G +++ + F ++K+
Sbjct: 299 VAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARSRDQFKLRKI 355
>gi|429765111|ref|ZP_19297415.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
celatum DSM 1785]
gi|429186973|gb|EKY27897.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
celatum DSM 1785]
Length = 542
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 131/419 (31%), Positives = 205/419 (48%), Gaps = 66/419 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL L++ ++ GF P+++Q+ AIP L +D++ Q+ TG+GKT A+ LP+++
Sbjct: 12 TFNDLGLKETLVKAIDDLGFTTPSQIQAEAIPVALAGNDLIGQAQTGTGKTAAFGLPMIN 71
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K I ++I+AP+REL +Q+ E+ KL +K + + GGA
Sbjct: 72 NLTV--------------KNAIGSIILAPTRELAIQVHDELVKLT-KYEKLNIVAVYGGA 116
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q L+K IVVGTPGR+ + G L FLVLDE DE+L+ F + M
Sbjct: 117 PIHLQARDLKK--ANIVVGTPGRVLDHIRRGNLPLSSVEFLVLDEADEMLNMGFIDDMEE 174
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + P+ ERQT++ SAT+P + + ++ + D AK+V
Sbjct: 175 IMKSI----------PE-------ERQTLLFSATMPPQIKKLSKKYLKD----DAKHVAI 213
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ M+GS+ N Q L + L R +
Sbjct: 214 AKK-----------EMTGSTIKQNFFEVHNSQRL-----------------EALCRLIDF 245
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ I F + + D V ++ARG +HGD+ ++ R TL KFKNG ++ LV
Sbjct: 246 DNPTAGIIFCRTKKGVDDLVAAMQARGYMVEGMHGDMSQVQRMKTLAKFKNGSLKFLVAT 305
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV V N +LP D Y HR GRTGR GR GT SI E +K+++
Sbjct: 306 DVAARGIDVDGVTHVFNYELPQDVESYVHRIGRTGRAGREGTAYSIITPREFGFLKQIK 364
>gi|94556865|gb|AAY89069.2| vasa-like protein [Litopenaeus vannamei]
Length = 703
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 145/510 (28%), Positives = 224/510 (43%), Gaps = 74/510 (14%)
Query: 42 GRHHGPLTLASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLE 101
GR+ G G+ + P S + K +P+ IP V D + G++
Sbjct: 184 GRNKGCFKCGQEGHNARDCPNPGEGSEEKKPRAPLYIPAD----VNEDELFVMGIEAGSN 239
Query: 102 IESA-----------PF--AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNH 148
++ P AA SF + L PLLLE + + G+ PT VQ IP+++
Sbjct: 240 FDAYANVPANVSGAEPIQPAAESFQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGR 299
Query: 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKS-SNGNGESGKKTDIEAVIVAPSRELGMQI 207
D++ + TGSGKT A+LLP+L + L + SN E + T +++ P+REL +QI
Sbjct: 300 DIMACAQTGSGKTAAFLLPMLHYI--LDNNCPSNAFEEPAQPT---GLVICPTRELAIQI 354
Query: 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267
+RE +K S K GGA Q + + I+V TPGR+ + GK+
Sbjct: 355 MREARKFSHSSVAKCCVAY-GGAAGFHQLKTIHSG-CHILVATPGRLLDFLEKGKIVFSS 412
Query: 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF 327
++LVLDE D +L F ++ ++ H + AER T+M SAT P
Sbjct: 413 LKYLVLDEADRMLDMGFLSSIKTVINH-------------KTMTPTAERITLMFSATFPH 459
Query: 328 SVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPA 387
+ A ++ ++ L V + G+ +N KQ
Sbjct: 460 EIQELASAFLNNYLFV----------------------VVGTVGAANTDVKQ-------- 489
Query: 388 LKHYYCVTKLQHKVDTLRRCVHAL---DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELH 444
CV K + K + C L D + ++ F+ R L + +A +H
Sbjct: 490 --EVLCVPKFEKKAKLVEMCEEILISADDEKILVFVEQKRVADFVGTYLCEKKFRATTMH 547
Query: 445 GDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRT 504
GD + R L +F+ G +LV ++ARGLD+ +VVN DLP D Y HR GRT
Sbjct: 548 GDRYQAQREQALSEFRTGVHNILVATAVTARGLDIKGIGVVVNYDLPKDIDEYVHRIGRT 607
Query: 505 GRLGRRGTVVSIC-EEPEVFVVKKMQKQLA 533
GRLG RG +S +E + + K + K L+
Sbjct: 608 GRLGNRGLSISFYDDETDACLTKDLVKVLS 637
>gi|402774970|ref|YP_006628914.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|402480155|gb|AFQ56664.1| Putative ATP-dependent RNA helicase [Bacillus subtilis QB928]
Length = 376
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 213/446 (47%), Gaps = 77/446 (17%)
Query: 103 ESAPFAAN--SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
++ PF N SF++ E GF PT VQ A I+ DV+ +S TG+GK
Sbjct: 3 QTWPFLHNAQSFIQ--------ENWNASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGK 54
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
TLAY LP+L ++ P ++ +AVI+APSREL MQI + I+ S+
Sbjct: 55 TLAYALPVLERIKP-------------EQKHPQAVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+A L+GGAN +Q E L+K+ P I+VGTPGR+ E+ A KL H + +VLDE D+L+
Sbjct: 102 RAA-SLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLV 159
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
RE M +I++ R +RQ + SAT+ R +P
Sbjct: 160 LPEHRETMKQIIKTTLR-----------------DRQLLCFSATLKKETEDVLRELAQEP 202
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+++ Q ++ +KH Y + + K
Sbjct: 203 EVLKV---------------------------------QRSKAKAGKVKHQYLICDQRDK 229
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
V L++ + L+ + F+ + L KL ++ LH + K+ R+ + F+
Sbjct: 230 VKLLQK-LSRLEGMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIATFE 288
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+GE +L+ +++ARGLD+ V++ D+P D Y HR+GRTGR G+ G V+S+ +
Sbjct: 289 DGEFPLLLATDIAARGLDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKL 347
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRL 546
E +KKM K+L V + + G+L
Sbjct: 348 EESKLKKMAKKLGVELSEAVYAGGKL 373
>gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
Length = 518
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/433 (28%), Positives = 209/433 (48%), Gaps = 66/433 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +SF LGL +L+ ++ GF P+ +Q AIP IL+ DV+ Q+ TG+GKT A+ LP
Sbjct: 18 ALDSFRALGLKDKVLKGIKEAGFTTPSPIQEKAIPPILERRDVIAQAQTGTGKTAAFALP 77
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL LK+ SS IEA+++ P+REL MQI E+ KL G K +
Sbjct: 78 ILH---SLKNDSS-----------IEALVITPTRELAMQISDEVFKL-GKFLKTKTVCVY 122
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + +Q E + K KP +++ TPGR+ + +L +VLDE DE+L F +
Sbjct: 123 GGQSVKKQLELIEK-KPQVLIATPGRLLDHLKNERLKNFAPNVVVLDESDEMLDMGFIDD 181
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I +++ P +A QT++ SAT+P + + A +DP+ ++ +
Sbjct: 182 IEEIFQYI----------PNNA-------QTLLFSATMPARIKQLADKILYDPVHIKIQ- 223
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
S S++N+++ + YY + + + + L R
Sbjct: 224 -------------------SSSTTNADIAQR------------YYIINE-NERNEALTRL 251
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ I F+ ++ + L+ +G K+ LHGD+ + R +++ FK E +L
Sbjct: 252 IDTESPSKSIIFIRTKKEADEVNSYLQNKGYKSTALHGDMDQRMRRDSVQAFKGKEADIL 311
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+ V N +P + Y HR GRTGR G +G +++ E +KK
Sbjct: 312 VATDVAARGLDIRNVSHVFNYHIPLNIESYVHRIGRTGRAGSKGVAITLATPLEYKDLKK 371
Query: 528 MQKQLAVPIQACE 540
+Q + + E
Sbjct: 372 IQNETNAKFELYE 384
>gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 448
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 196/407 (48%), Gaps = 60/407 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + L LL+ L+ G + PTE+Q AIP L D++ S TGSGKTLA+LLP + +
Sbjct: 3 FTDFALDQRLLQSLKHMGIDTPTEIQEQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ K S K D VI+ P+REL Q+ +++ L+ + KA + ++GG N
Sbjct: 63 LISCKALS---------KRDPRVVILLPTRELATQVYSQLRLLVANTQFKATK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +AL ++ P VV TPGR+A+ LH +G L+LDE D +L F E + I
Sbjct: 113 FNDQAKALSRD-PHFVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKMI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+A A RQT+M SAT+ H + A ++
Sbjct: 172 ----------------NAAADHKRRQTLMFSATLD-----------HGDVNDIANELLKF 204
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
A G GNL + K Q + + C L HK L R +
Sbjct: 205 PEHVAIGAGNL-------------EHKDITQRI------FLC-DHLDHKEAILTRILKEE 244
Query: 412 DAQTVIAFMNNTRQLKDAV-FKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ +I F TRQ D + KL A G K A L G+L + AR+ + +F G ++LVT
Sbjct: 245 QQKQIIIF-TATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQILVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++++RGLD+ LV+N D+P + Y HR GRTGR G +G +S+
Sbjct: 304 DVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350
>gi|434399810|ref|YP_007133814.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
gi|428270907|gb|AFZ36848.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
Length = 485
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 120/422 (28%), Positives = 205/422 (48%), Gaps = 64/422 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGL +++LE GF PT++Q AIPS+L+ D+V QS TG+GKT A+ LP+L
Sbjct: 4 TFKSLGLSDTCVQQLEELGFVEPTQIQQQAIPSLLEGRDLVGQSQTGTGKTAAFSLPMLD 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ + ++ +I+ P+REL Q+ + I + + V + GG
Sbjct: 64 LI-------------DSRNKAVQGLILTPTRELAQQVGQAINDF-ASNRRIYVLTVYGGQ 109
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ RQ +LRK +VVGTPGRI ++ +L R VLDE DE+LS F + + +
Sbjct: 110 SIERQIRSLRKG-VQVVVGTPGRIIDLLERKELSLDQVRLAVLDESDEMLSMGFIDDVKK 168
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + +RQT SAT+P + + + P++V +
Sbjct: 169 ILQQASK-----------------QRQTACFSATMPREIKDLIQQFLKSPIMVTVEQ--- 208
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
P P + N QA Y V + HK L+ +
Sbjct: 209 ----PKAAPARI-----------NQQA--------------YMVPRGWHKNQALQPILEI 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + I F+ + + KL+ G E HGDL ++ R +++F++G+++++V
Sbjct: 240 EEIDSAIIFVRTKKTASELTSKLQEAGHSVDEYHGDLSQIQRERLVQRFRDGKIKMIVAT 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV V+N DLP ++ Y HR GRTGR G+ GT +++ + + +++++
Sbjct: 300 DIAARGLDVENLTHVINYDLPDNAETYIHRIGRTGRAGKHGTAIALVQPIDRRTLRQIEH 359
Query: 531 QL 532
+L
Sbjct: 360 RL 361
>gi|358446581|ref|ZP_09157126.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356607542|emb|CCE55468.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 675
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 131/462 (28%), Positives = 208/462 (45%), Gaps = 79/462 (17%)
Query: 59 FEP-TNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGL 117
EP N N+S K + A+V +D + G + P F LGL
Sbjct: 12 MEPEDNFNQSESQDKTQGDAVDTAQVTGA-ADTSEDTGAEDKNSANDNP---QGFANLGL 67
Query: 118 PPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKD 177
P + + + + G+ P+ +QS IP +++ DVV + TG+GKT A+ LP+LS++
Sbjct: 68 PDNVQDAVAKVGYTTPSPIQSETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI----- 122
Query: 178 KSSNGNGESGKKTDI-----EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANR 232
DI +A+++AP+REL +Q+ + + V + GG
Sbjct: 123 -------------DINARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAY 169
Query: 233 SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E + RI+
Sbjct: 170 GIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERIL 228
Query: 293 EHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLE 352
P+ E+Q + SAT+P + R ++ + ++P V K
Sbjct: 229 ADT----------PE-------EKQVALFSATMPNGIRRLSKQYLNNPAEVTVK------ 265
Query: 353 SMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALD 412
S +N N +K + +T + K+D R + D
Sbjct: 266 --------------SQQRTNDN-------------IKQRFLLTAHRAKLDAFTRILEVTD 298
Query: 413 AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472
+I F + ++ KL G AA ++GD+ + R T+ + K+G + +LV ++
Sbjct: 299 YDAMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATDV 358
Query: 473 SARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
+ARGLDV VVN D+P D+ Y HR GRTGR GR G +
Sbjct: 359 AARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAI 400
>gi|372210459|ref|ZP_09498261.1| DEAD/DEAH box helicase [Flavobacteriaceae bacterium S85]
Length = 605
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 201/413 (48%), Gaps = 65/413 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPIL 169
+F ELGL +L L G+ P+E+Q AIP ++ + D+ + TG+GKT A+ LPI+
Sbjct: 3 TFSELGLREEILSALADMGYETPSEIQQKAIPQVINSTDDLKAFAQTGTGKTAAFSLPII 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ P + +++A+I++P+REL +QI +I+K + GG
Sbjct: 63 QQIDP-------------ENNNVQAIILSPTRELAVQIGDQIQKFSKNIKGLKTVTVYGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A+ Q L+K IVVGTPGR ++ + KL ++LVLDE DE+L+ F++ +
Sbjct: 110 ASIEDQFRKLKKG-AQIVVGTPGRTVDLISRRKLKLENIQWLVLDEADEMLNMGFKDDLD 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++E A P +QT++ SAT P V AR++ ++P V+A
Sbjct: 169 AVLE-------ATPET----------KQTLLFSATFPKEVEAIARNYMYNPAEVEA---- 207
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
TG N+S YY VT+ +++ ++R
Sbjct: 208 ---GTKNTGSDNVSN-------------------------EYYVVTE-RNRYAAIKRIAD 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F R+ ++ KL A G A LHGDL + R + ++KF+N +++LV
Sbjct: 239 INPDIYGIIFCRTRRECQEVSEKLIADGYNADSLHGDLSQAQRDSVMQKFRNKNIQMLVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARGLDV V+N LP + Y HR+GRTGR G +G + + EV
Sbjct: 299 TDVAARGLDVNNLTHVINHKLPDQNEAYTHRSGRTGRAGNKGVSIVLVTSREV 351
>gi|334337081|ref|YP_004542233.1| DEAD/DEAH box helicase [Isoptericola variabilis 225]
gi|334107449|gb|AEG44339.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225]
Length = 607
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 129/449 (28%), Positives = 207/449 (46%), Gaps = 60/449 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L LP L ++ GF P+ +Q+ AIP++L D+ + TG+GKT A+ LP+L+
Sbjct: 13 TFTDLALPAPLQAAVDDLGFTTPSPIQARAIPALLSGRDITGVAQTGTGKTAAFGLPLLA 72
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
V P +S G ++A+++ P+REL +Q+ I+ V + GGA
Sbjct: 73 AVDP---AASVAGGH------VQALVLTPTRELAIQVADAIESFATHLPGLRVLSVYGGA 123
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q+ ALR + +VVGTPGR+ + G L RFLVLDE DE+L F E + +
Sbjct: 124 PYVPQQRALR-DGVHVVVGTPGRVMDHMERGALSLDAVRFLVLDEADEMLRMGFAEDVEK 182
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I R RQ + SAT+P ++ A + DP+ +
Sbjct: 183 IFGQAPER-----------------RQVALFSATMPPAIRTVAETHLTDPVEITVSRQ-- 223
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
SS+ +N++ Y + +HKV +L R +
Sbjct: 224 ------------------SSTTTNVE-------------QSYAIVPFRHKVGSLVRVLAT 252
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
DA I F ++ L RG+ A+ + GD+ + R +++ ++G + VLV
Sbjct: 253 SDADATIVFTRTRAAAEEVGAALVERGISASTISGDVAQKERERIVERLRSGALDVLVAT 312
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV LVVN D+P ++ Y HR GRTGR GR G +S E +K +++
Sbjct: 313 DVAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGKALSFVTPHERGKLKHIER 372
Query: 531 QLAVPIQACEFTEGRLVIGKEEEKTLEAV 559
+ + E + V + L+AV
Sbjct: 373 TIRAELTEVEIPSPKDVSEHRARRMLDAV 401
>gi|441523228|ref|ZP_21004858.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
gi|441457193|dbj|GAC62819.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
Length = 596
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 206/430 (47%), Gaps = 66/430 (15%)
Query: 104 SAPFAANS--FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKT 161
+AP A S F +LG+ P +L+ L+ G+ P+ +Q+A IP +++ DVV + TG+GKT
Sbjct: 10 TAPAAEKSTAFGDLGIDPGVLKALDDVGYETPSPIQAATIPPLMEGRDVVGLAQTGTGKT 69
Query: 162 LAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKK 221
A+ LPIL+++ S +K +A+++AP+REL +Q+ +
Sbjct: 70 AAFALPILTRLD-----------TSARKP--QALVLAPTRELALQVAEAFGSYSTYLPEV 116
Query: 222 AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLS 281
V + GG + Q LR+ ++VGTPGR+ + G L FLVLDE DE+L+
Sbjct: 117 KVLPIYGGQSYGIQLSGLRRGA-QVIVGTPGRVIDHLDKGTLDLSQLEFLVLDEADEMLT 175
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
F E + RI+ P ++Q + SAT+P ++ R AR + ++P
Sbjct: 176 MGFAEDVERILADT----------PD-------QKQVALFSATMPAAIGRLARKYLNNPQ 218
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
V KN +++ N+ K Y Q K+
Sbjct: 219 EVTVKN--------------------KTATAQNITQK-------------YLQVSHQRKL 245
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
D L R + +I F+ ++ KL ARG+ A ++GD+ + R T+ + K+
Sbjct: 246 DALTRVLEVEPFDGMIVFVRTKSATEELAEKLRARGLSAMAINGDMVQAQRERTINQLKD 305
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
G + +LV +++ARGLDV VVN D+P D Y HR GRTGR GR GT + E
Sbjct: 306 GSLDILVATDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTGRAGRSGTALLFVSPRE 365
Query: 522 VFVVKKMQKQ 531
+++ +++
Sbjct: 366 RHLLRSIERH 375
>gi|359774481|ref|ZP_09277848.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
gi|359308367|dbj|GAB20626.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
Length = 574
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 64/452 (14%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
+A +F LG+ + + L+ G+ P+ +Q+A IP ++ +DVV + TG+GKT A+ +P
Sbjct: 5 SAATFDGLGIDERVRQALDDVGYETPSPIQAATIPPLMAGNDVVGLAQTGTGKTAAFAIP 64
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
ILS++ S +K +A+++AP+REL +Q+ K V +
Sbjct: 65 ILSRLD-----------SSARKP--QALVLAPTRELALQVSEAFGKYSSHMPDVRVLPIY 111
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + + Q LR+ ++VGTPGR+ + G L FLVLDE DE+L+ F E
Sbjct: 112 GGQSYTVQLSGLRRGA-QVIVGTPGRVIDHLDKGTLDISQLEFLVLDEADEMLTMGFAED 170
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ RI+ P S +Q + SAT+P ++ R A+ + +P
Sbjct: 171 VERILSDT----------PDS-------KQVALFSATMPKAIGRLAKKYLKNP------T 207
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ +ES AT N+ K Y Q K+D L R
Sbjct: 208 EVAVESKTATA--------------QNITQK-------------YLQVSHQRKLDALTRV 240
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ +I F+ + ++ +L ARG A ++GDL + R T+ + KN + +L
Sbjct: 241 LEVETFDGMIVFVRTKQATEELAERLRARGFSAVAINGDLAQAQRERTINQLKNSTIDIL 300
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLDV VVN D+P D+ Y HR GRTGR GR GT + E +++
Sbjct: 301 VATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRA 360
Query: 528 MQKQLAVPIQACEFTEGRLVIGKEEEKTLEAV 559
++K P++ + V + +EK +++
Sbjct: 361 IEKMTRQPLEEIDLPSVDDVNTQRKEKFADSI 392
>gi|16077810|ref|NP_388624.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
168]
gi|221308581|ref|ZP_03590428.1| hypothetical protein Bsubs1_04163 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312906|ref|ZP_03594711.1| hypothetical protein BsubsN3_04119 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317830|ref|ZP_03599124.1| hypothetical protein BsubsJ_04073 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322104|ref|ZP_03603398.1| hypothetical protein BsubsS_04164 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|418034162|ref|ZP_12672638.1| hypothetical protein BSSC8_35820 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452913779|ref|ZP_21962407.1| helicase conserved C-terminal domain protein [Bacillus subtilis
MB73/2]
gi|81815767|sp|O34750.1|YFML_BACSU RecName: Full=Putative ATP-dependent RNA helicase YfmL
gi|2443255|dbj|BAA22326.1| YfmL [Bacillus subtilis]
gi|2633067|emb|CAB12572.1| putative ATP-dependent RNA helicase [Bacillus subtilis subsp.
subtilis str. 168]
gi|351469106|gb|EHA29302.1| hypothetical protein BSSC8_35820 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407956427|dbj|BAM49667.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7613]
gi|407963698|dbj|BAM56937.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7003]
gi|452118807|gb|EME09201.1| helicase conserved C-terminal domain protein [Bacillus subtilis
MB73/2]
Length = 376
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 213/446 (47%), Gaps = 77/446 (17%)
Query: 103 ESAPFAAN--SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
++ PF N SF++ E GF PT VQ A I+ DV+ +S TG+GK
Sbjct: 3 QTWPFLHNAQSFIQ--------ENWNASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGK 54
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
TLAY LP+L ++ P ++ +AVI+APSREL MQI + I+ S+
Sbjct: 55 TLAYALPVLERIKP-------------EQKHPQAVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+A L+GGAN +Q E L+K+ P I+VGTPGR+ E+ A KL H + +VLDE D+L+
Sbjct: 102 RAA-SLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLV 159
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
RE M +I++ R +RQ + SAT+ R +P
Sbjct: 160 LPEHRETMKQIIKTTLR-----------------DRQLLCFSATLKKETEDVLRELAQEP 202
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+++ Q ++ +KH Y + + K
Sbjct: 203 EVLKV---------------------------------QRSKAEAGKVKHQYLICDQRDK 229
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
V L++ + L+ + F+ + L KL ++ LH + K+ R+ + F+
Sbjct: 230 VKLLQK-LSRLEGMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIATFE 288
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+GE +L+ +++ARGLD+ V++ D+P D Y HR+GRTGR G+ G V+S+ +
Sbjct: 289 DGEFPLLLATDIAARGLDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKL 347
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRL 546
E +KKM K+L V + + G+L
Sbjct: 348 EESKLKKMAKKLGVELSEAVYAGGKL 373
>gi|323496504|ref|ZP_08101562.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
sinaloensis DSM 21326]
gi|323318781|gb|EGA71734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
sinaloensis DSM 21326]
Length = 444
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 202/439 (46%), Gaps = 61/439 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F TE+Q AIP + D++ S TGSGKTLA++LPIL K
Sbjct: 3 FKDLGLDNRLLKNLKHLDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPILHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK K+ + D AVI+AP+REL Q+ E++ +L A +VGG N
Sbjct: 63 --SLKSKAFSAK-------DPRAVILAPTRELAKQVYGELRTMLAGLSYDATL-IVGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALRK P +V TPGR+A+ L G LVLDE D +L F + RI
Sbjct: 113 FNDQVKALRKY-PKFIVATPGRLADHLEHRSLFLEGLETLVLDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT+ + + N I
Sbjct: 172 HNAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAF 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 200 EM--------LNAPKRIAVGVSNEEHKDITQK-------FYLCDHLDHKEAILERVIEEA 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + +I F KL + +KA L G+L + R+T + +F+ ++LVT +
Sbjct: 245 NYKQLIIFTATRADTDRLTEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G VS+ + K+++
Sbjct: 305 VASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVEAY 364
Query: 532 LAVPIQACEFTEGRLVIGK 550
L Q F+E + GK
Sbjct: 365 LQ---QDLSFSELEGLKGK 380
>gi|386720987|ref|YP_006187312.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|384088111|gb|AFH59547.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 425
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 207/425 (48%), Gaps = 73/425 (17%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LG+ L E L + G++ PT +Q AIPS+L HDV+ Q+ TG+GKTLA++LPIL
Sbjct: 4 NEFQALGISQELAEALHKHGYHEPTPIQREAIPSVLGGHDVIAQAQTGTGKTLAFVLPIL 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ P ++ ++A+IV P+REL +QI E+ + P V GG
Sbjct: 64 ESIDP-------------NRSHVQALIVTPTRELAIQITEEVARW-APLKGIRVLSAYGG 109
Query: 230 ANRSRQEEALRKNKPAI--VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
+ RQ +RK + AI +V TPGR+ + + LVLDE D++L F
Sbjct: 110 QDVERQ---IRKLEGAIHIIVATPGRLLDHLRRETVQLFKLSTLVLDEADQMLHMGF--- 163
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK- 346
+ +VE + A P RQT++ SAT+P V + A+ + P+ ++ K
Sbjct: 164 LPEVVEIIS----ATP----------TRRQTLLFSATMPERVRQLAKEYMKPPVEIEVKA 209
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAK-QADQSLPPALKHYYCVTKLQHKVDTLR 405
+ L+ + + +S L A +A + PP L +C TKL+
Sbjct: 210 KRVTLDEIEQI--------VVQTSDRGKLDALCKAMEEDPPFLGMIFCRTKLR------- 254
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+L+D +L+ RG ELHGDL + R +K+F++ +++
Sbjct: 255 -----------------ATKLRD---ELDERGYAVDELHGDLTQAKREQVMKRFRDAKIQ 294
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
LV +++ARGLDV V N D+P D+ Y HR GRTGR G+ G ++ + F +
Sbjct: 295 FLVATDIAARGLDVEGITHVYNYDIPHDAESYIHRIGRTGRAGQTGKAITFTAPRDAFYL 354
Query: 526 KKMQK 530
+ ++K
Sbjct: 355 EAIEK 359
>gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
Length = 507
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 202/428 (47%), Gaps = 61/428 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LG+ + L EG + P +Q +P L D++ Q+ TG GKT A+ +P+L
Sbjct: 11 TFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQ 70
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK---KLLGPSDKK-AVQQL 226
+V +K +G A+IV P+REL +Q+ ++ K L D+K +V +
Sbjct: 71 RVTTDTEKELSGI--------PRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSI 122
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q E+LRK +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 123 YGGRPYEPQIESLRKGAD-VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLP 181
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ P + RQ ++ SAT+P +I AR++ + P ++A+
Sbjct: 182 DIERILRQT----------PDT-------RQAMLFSATMPDPIITLARTFMNQPTHIRAE 224
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ P S ++ ++ Q +L KV+ + R
Sbjct: 225 S-----------------PQSSATHDTTAQFAYRAHAL--------------DKVEMVSR 253
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R + +L RG K +HGDLG+ AR LK F+ GEV V
Sbjct: 254 ILQADGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDV 313
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 314 LVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDELPRWS 373
Query: 527 KMQKQLAV 534
+ K L +
Sbjct: 374 MIDKALGL 381
>gi|350425682|ref|XP_003494199.1| PREDICTED: cold-shock DEAD box protein A-like [Bombus impatiens]
Length = 734
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 198/426 (46%), Gaps = 64/426 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF++LGLP +L+ L GF P+ +Q+ IP +LK DV+ + TGSGKT A+ LP L+
Sbjct: 6 SFVDLGLPEEILQALNDLGFTKPSPIQAQCIPLLLKGEDVLGMAQTGSGKTAAFSLPFLT 65
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ D S + +++AP+REL +Q+ + V L GG
Sbjct: 66 NI----DVSLKAP---------QLLVLAPTRELAIQVAEACSEFTKYMKGVKVLALYGGQ 112
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL K P IVVGTPGR+ + G L + LVLDE DE+L F + +
Sbjct: 113 RYDVQLRAL-KQGPQIVVGTPGRLLDHLNRGTLKLDSLKGLVLDEADEMLRMGFIDDVEN 171
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ A+ + QT + SAT+P + R + + ++P
Sbjct: 172 IMN-----------------AIPDDHQTALFSATMPAPIRRITKRFMNNP---------- 204
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+Q K +Q+ P + Y+ V L+ K + L R + A
Sbjct: 205 ----------------------KEVQIKATNQTAPDIDQSYWTVNGLR-KNEALIRFLEA 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D I F+ D LE G +A L+GD+ + R TL + ++G + +L+
Sbjct: 242 EDFDAAIIFVRTKTATLDVAEVLEKHGYSSAALNGDMTQALREQTLDRLRDGRLDILIAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV LVVN D+P DS Y HR GRTGR GR G + + E +++ +++
Sbjct: 302 DVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIEQ 361
Query: 531 QLAVPI 536
+ PI
Sbjct: 362 IIKKPI 367
>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AN-5034]
gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus Peru-466]
gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus K5030]
gi|433660511|ref|YP_007301370.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus Peru-466]
gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AN-5034]
gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus K5030]
gi|432511898|gb|AGB12715.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
Length = 444
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 204/433 (47%), Gaps = 60/433 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F PT++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVGGA 230
LK KS + D AVI+AP+REL Q+ E++ +L G S A+ ++GG
Sbjct: 63 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLAGLSYDAAL--ILGGE 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + Q +ALR+ P +V TPGR+A+ L+ G L+LDE D +L F + R
Sbjct: 112 NFNDQVKALRRY-PKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I R RQT+M SAT+ + + N I
Sbjct: 171 IHNAAKHR----------------RRQTLMFSATLDHAEV----------------NDIA 198
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 199 SEM--------LNAPKRIAVGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLSE 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT
Sbjct: 244 AEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+A V+N D+P + Y HR GRTGR G +G +S+ + K+++
Sbjct: 304 DVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRIET 363
Query: 531 QLAVPIQACEFTE 543
L + F +
Sbjct: 364 YLQQDLAFSVFED 376
>gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
Length = 507
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 202/428 (47%), Gaps = 61/428 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LG+ + L EG + P +Q +P L D++ Q+ TG GKT A+ +P+L
Sbjct: 11 TFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQ 70
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK---KLLGPSDKK-AVQQL 226
+V +K +G A+IV P+REL +Q+ ++ K L D+K +V +
Sbjct: 71 RVTTDTEKELSGI--------PRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSI 122
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q E+LRK +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 123 YGGRPYEPQIESLRKGAD-VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLP 181
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ P + RQ ++ SAT+P +I AR++ + P ++A+
Sbjct: 182 DIERILRQT----------PDT-------RQAMLFSATMPDPIITLARTFMNQPTHIRAE 224
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ P S ++ ++ Q +L KV+ + R
Sbjct: 225 S-----------------PQSSATHDTTAQFAYRAHAL--------------DKVEMVSR 253
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R + +L RG K +HGDLG+ AR LK F+ GEV V
Sbjct: 254 ILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDV 313
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 314 LVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDELPRWS 373
Query: 527 KMQKQLAV 534
+ K L +
Sbjct: 374 MIDKALGL 381
>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
Length = 658
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 131/463 (28%), Positives = 209/463 (45%), Gaps = 79/463 (17%)
Query: 58 EFEP-TNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELG 116
E EP N N+S K + A+V +D + G + P F LG
Sbjct: 11 EMEPEDNFNQSESQDKTQGDAVATAQVTGA-ADTSEDTGAEDKNSANDNP---QGFGNLG 66
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP + + + + G+ P+ +Q+ IP +++ DVV + TG+GKT A+ LP+LS++
Sbjct: 67 LPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI---- 122
Query: 177 DKSSNGNGESGKKTDI-----EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
D+ +A+++AP+REL +Q+ + + V + GG
Sbjct: 123 --------------DVNARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQA 168
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q LR+ I+VGTPGR+ + G L RFLVLDE DE+L+ F+E + RI
Sbjct: 169 YGIQLSGLRRG-AQIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERI 227
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ P+ E+Q + SAT+P S+ R ++ + + P V K
Sbjct: 228 LADT----------PE-------EKQVALFSATMPNSIRRLSKKYLNSPAEVTVK----- 265
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S +N N +K + +T + K+D R +
Sbjct: 266 ---------------SEQRTNDN-------------IKQRFLLTAHRAKLDAFTRILEVT 297
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D +I F + ++ KL G AA ++GD+ + R T+ + K+G + +LV +
Sbjct: 298 DYDAMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATD 357
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
++ARGLDV VVN D+P D+ Y HR GRTGR GR G +
Sbjct: 358 VAARGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAI 400
>gi|384174419|ref|YP_005555804.1| DEAD/DEAH box helicase family protein [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|349593643|gb|AEP89830.1| DEAD/DEAH box helicase family protein [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
Length = 376
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 213/446 (47%), Gaps = 77/446 (17%)
Query: 103 ESAPFAAN--SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
++ PF N SF++ E GF PT VQ A I+ DV+ +S TG+GK
Sbjct: 3 QTWPFLHNAQSFIQ--------ENWNASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGK 54
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
TLAY LP+L ++ P ++ +AVI+APSREL MQI + I+ S+
Sbjct: 55 TLAYALPVLERIKP-------------EQKHPQAVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+A L+GGAN +Q E L+K+ P I+VGTPGR+ E+ A KL H + +VLDE D+L+
Sbjct: 102 RAA-SLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLV 159
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
RE M +I++ R +RQ + SAT+ R +P
Sbjct: 160 LPEHRETMKQIIKTTLR-----------------DRQLLCFSATLKKETEDVLRELAQEP 202
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+++ Q ++ +KH Y + + K
Sbjct: 203 EVLKV---------------------------------QRSKTEAGKVKHQYLICDQRDK 229
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
V L++ + L+ + F+ + L KL ++ LH + K+ R+ + F+
Sbjct: 230 VKLLQK-LSRLEGMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIAAFE 288
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+GE +L+ +++ARGLD+ V++ D+P D Y HR+GRTGR G+ G V+S+ +
Sbjct: 289 DGEFPLLLATDIAARGLDIENLPYVIHADIP-DEDGYIHRSGRTGRAGKEGNVLSLVTKL 347
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRL 546
E +KKM K+L V + + G+L
Sbjct: 348 EESKLKKMAKKLGVELSEAVYAGGKL 373
>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 419
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 205/425 (48%), Gaps = 60/425 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ F LGL LL LE GF PTEVQ+ AIP +L+ DV+ + TG+GKT A+ LPI
Sbjct: 2 STQFAALGLGSTLLSTLESLGFKQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPI 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L K L D + + +S D+ A+++ P+REL Q+ + + + K V + G
Sbjct: 62 LQK---LIDSDTKRDIQS---NDVRALVLVPTRELAQQVFDNLTQYAAQTKIKVV-AVYG 114
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + + Q L + I++ TPGR+ + ++ H +LVLDE D +L F +
Sbjct: 115 GTSMNVQTRNLDQG-CDILIATPGRLIDHMYCKNINLHKTEYLVLDEADRMLDMGFMPDI 173
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI++ +RQT+ SAT + A +P+ VQ
Sbjct: 174 KRILQRCN-----------------DDRQTLFFSATFDKRIKTIAYRMLEEPVEVQV--- 213
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S SN A+ Q + P K + K + L +
Sbjct: 214 ----------------------SPSNSTAETVKQMVYPVDK--------KRKAELLAYLI 243
Query: 409 HALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + Q V+ F T+Q DA+ K L+ G+KAA ++GD + AR L FK+G+VR L
Sbjct: 244 GSRNWQQVLVF-TKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVRAL 302
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
+ +++ARGLD+ + + VVN D+P + Y HR GRTGR G+ G VS+ E +++
Sbjct: 303 IATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLLHA 362
Query: 528 MQKQL 532
+++ L
Sbjct: 363 IERLL 367
>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
2210633]
gi|417323065|ref|ZP_12109595.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
parahaemolyticus RIMD 2210633]
gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
Length = 448
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 204/433 (47%), Gaps = 60/433 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F PT++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVGGA 230
LK KS + D AVI+AP+REL Q+ E++ +L G S A+ ++GG
Sbjct: 67 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLAGLSYDAAL--ILGGE 115
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + Q +ALR+ P +V TPGR+A+ L+ G L+LDE D +L F + R
Sbjct: 116 NFNDQVKALRRY-PKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRR 174
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I R RQT+M SAT+ + + N I
Sbjct: 175 IHNAAKHR----------------RRQTLMFSATLDHAEV----------------NDIA 202
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 203 SEM--------LNAPKRIAVGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLSE 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT
Sbjct: 248 AEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTT 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+A V+N D+P + Y HR GRTGR G +G +S+ + K+++
Sbjct: 308 DVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRIET 367
Query: 531 QLAVPIQACEFTE 543
L + F +
Sbjct: 368 YLQQDLAFSVFED 380
>gi|321314473|ref|YP_004206760.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
gi|320020747|gb|ADV95733.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
Length = 376
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 213/446 (47%), Gaps = 77/446 (17%)
Query: 103 ESAPFAAN--SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
++ PF N SF++ E GF PT VQ A I+ DV+ +S TG+GK
Sbjct: 3 QTWPFLHNAQSFIQ--------ENWNASGFQTPTPVQEQAAQLIMDGKDVIAESPTGTGK 54
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
TLAY LP+L ++ P ++ +AVI+APSREL MQI + I+ S+
Sbjct: 55 TLAYALPVLERIKP-------------EQKHPQAVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+A L+GGAN +Q E L+K+ P I+VGTPGR+ E+ A KL H + +VLDE D+L+
Sbjct: 102 RAA-SLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDEADQLI 159
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
RE + +I++ R +RQ + SAT+ R +P
Sbjct: 160 LPEHRETIKQIIKTTLR-----------------DRQLLCFSATLKKETEDVLRELAQEP 202
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+++ Q ++ +KH Y + + K
Sbjct: 203 EVLKV---------------------------------QRSKAEAGKVKHQYLICDQRDK 229
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
V L++ + L+ + F+ + L KL ++ LH + K+ R+ + F+
Sbjct: 230 VKLLQK-LSRLEGMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIISAFE 288
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+GE +L+ +++ARGLD+ V++ D+P D Y HR+GRTGR G+ G V+S+ +
Sbjct: 289 DGEFPLLLATDIAARGLDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKL 347
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRL 546
E +KKM K+L V + + G+L
Sbjct: 348 EESKLKKMAKKLGVELSEAVYAGGKL 373
>gi|70733057|ref|YP_262830.1| ATP-dependent RNA helicase DbpA [Pseudomonas protegens Pf-5]
gi|68347356|gb|AAY94962.1| ATP-independent RNA helicase DbpA [Pseudomonas protegens Pf-5]
Length = 461
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/428 (28%), Positives = 203/428 (47%), Gaps = 65/428 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F L L P +L L+ G+ T +Q+ ++P ILK D++ Q+ TGSGKT A+ + +
Sbjct: 5 ATAFNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGL 64
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L+ + P + +A+++ P+REL Q+ +E+++L D V L G
Sbjct: 65 LNPINP-------------RYFGCQALVICPTRELADQVAKEVRRLARAEDNIKVLTLCG 111
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q +L ++ I+VGTPGRI + G L G LVLDE D +L F +A+
Sbjct: 112 GVSFGPQIASL-EHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAI 170
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+E R RQT++ SAT P + + A + DP V+A+
Sbjct: 171 EDIIEKTPSR-----------------RQTLLFSATYPVGIKQLASKFMRDPQTVKAE-- 211
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ + + Q +Q + P + ++ + + +
Sbjct: 212 ---------------------AFHDDTQIEQRFYEISP-----------EERMSAVTKVL 239
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
H + +AF +Q+++ V L A+G+ A LHGDL + R L F N VLV
Sbjct: 240 HHFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLV 299
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+ D+V+N++L DS + HR GRTGR G +G VS+ E + +
Sbjct: 300 ATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAI 359
Query: 529 QKQLAVPI 536
++ P+
Sbjct: 360 EQLQKAPL 367
>gi|260776996|ref|ZP_05885890.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
gi|260606662|gb|EEX32936.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
Length = 449
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/442 (31%), Positives = 209/442 (47%), Gaps = 67/442 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F TE+Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 9 FKDLGLDNRLLKNLKHFDFKQATEIQQQAIPVSIAGKDLLASSKTGSGKTLAFVLPMLHK 68
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK+K+ + G VI+AP+REL Q+ E++ +LG A +VGG N
Sbjct: 69 --SLKNKAFSAKDPRG-------VILAPTRELAKQVYGELRSMLGGLSYDATL-IVGGEN 118
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L+ G L+LDE D +L F + RI
Sbjct: 119 FNDQVKALRRY-PKFIVATPGRLADHLDHRSLYLDGLETLILDEADRMLDLGFAPELRRI 177
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT+ + + N I
Sbjct: 178 HNAAKHR----------------RRQTLMFSATLDHAEV----------------NEIAF 205
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E + A P + SN + K Q +Y L HK L R +
Sbjct: 206 EMLDA--------PKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILERILEEA 250
Query: 412 DAQTVIAFMN---NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ + +I F +T +L D KL + +KA L G+L + R+T + +F+ ++LV
Sbjct: 251 EYKQLIIFTATRVDTERLTD---KLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILV 307
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
T ++++RGLD+A VVN D+P + Y HR GRTGR G +G VS+ + K++
Sbjct: 308 TTDVASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRV 367
Query: 529 QKQLAVPIQACEFTEGRLVIGK 550
+ L Q F+E + GK
Sbjct: 368 EAYLQ---QDLTFSELEGLKGK 386
>gi|425769747|gb|EKV08230.1| ATP-dependent RNA helicase , putative [Penicillium digitatum Pd1]
gi|425771396|gb|EKV09840.1| ATP-dependent RNA helicase , putative [Penicillium digitatum PHI26]
Length = 494
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 203/436 (46%), Gaps = 69/436 (15%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E+ P A +F ELGL L E ++ G+ PT +QS +IP L+ D++ + TGSGKT
Sbjct: 65 ETEPSAPKTFKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTA 124
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
+++LPIL L +K G +++AP+REL QI + LG +
Sbjct: 125 SFVLPILQA---LMEKPQPFFG----------LVMAPTRELAYQISLACES-LGATINVR 170
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLS 281
LVGG + Q AL K KP I+V TPGR+ + + +FLV+DE D LL
Sbjct: 171 STTLVGGMDMVPQSIALGK-KPHIIVATPGRLLDHLENTKGFSLRNLKFLVMDEADRLLD 229
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
+F + +I++ + R ER+T + SAT+ V R+
Sbjct: 230 MDFGPILDKILKVLPR-----------------ERRTFLFSATLSSKVESLQRA------ 266
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
+LS P S S+S + L+ Y + +HK
Sbjct: 267 -------------------SLSNPARVSISSSKYATVE-------TLQQTYILRPYKHKD 300
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
L +H Q+VI FM + + F L G A LHG + + AR L KF++
Sbjct: 301 IYLVYLLHEFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRS 360
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+LV +++ARGLD+ D V+N DLPTDS Y HR GRT R G+ GT +S + +
Sbjct: 361 KSREILVATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYD 420
Query: 522 VFVVKK----MQKQLA 533
V + ++ M K+LA
Sbjct: 421 VEIWQRIEAAMGKELA 436
>gi|379718419|ref|YP_005310550.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|378567091|gb|AFC27401.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
Length = 578
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 206/425 (48%), Gaps = 73/425 (17%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LG+ L E L + G+N PT +Q AIPS+L HDV+ Q+ TG+GKTLA++LPIL
Sbjct: 4 NEFQALGISQELAEALHKHGYNEPTPIQREAIPSVLGGHDVIAQAQTGTGKTLAFVLPIL 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ P ++ ++A+IV P+REL +QI E+ + P V GG
Sbjct: 64 ESIDP-------------NRSHVQALIVTPTRELAIQITEEVARW-APLKGIRVLSAYGG 109
Query: 230 ANRSRQEEALRKNKPAI--VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
+ RQ +RK + AI +V TPGR+ + + LVLDE D++L F
Sbjct: 110 QDVERQ---IRKLEGAIHIIVATPGRLLDHLRRETVQLFKLSTLVLDEADQMLHMGF--- 163
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK- 346
+ +VE + A P RQT++ SAT+P V + A+ + P+ ++ K
Sbjct: 164 LPEVVEIIS----ATP----------TRRQTLLFSATMPERVRQLAKEYMKPPVEIEVKA 209
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAK-QADQSLPPALKHYYCVTKLQHKVDTLR 405
+ L+ + + ++ L A +A + PP L +C TKL+
Sbjct: 210 KRVTLDEIEQI--------VVQTTDRGKLDALCKAMEEDPPFLGMIFCRTKLR------- 254
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+L+D +L+ RG ELHGDL + R +K+F++ +++
Sbjct: 255 -----------------ATKLRD---ELDERGYAVDELHGDLTQAKREQVMKRFRDAKIQ 294
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
LV +++ARGLDV V N D+P D+ Y HR GRTGR G G ++ + F +
Sbjct: 295 FLVATDIAARGLDVEGITHVYNYDIPHDAESYIHRIGRTGRAGMTGKAITFTAPRDAFYL 354
Query: 526 KKMQK 530
+ ++K
Sbjct: 355 EAIEK 359
>gi|424032469|ref|ZP_17771886.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|408875527|gb|EKM14671.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
Length = 443
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 202/432 (46%), Gaps = 58/432 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK+KS + D AVI+AP+REL Q+ E++ +LG A ++GG N
Sbjct: 63 --SLKNKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLGGLSYDAAL-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L G LVLDE D +L F + RI
Sbjct: 113 FNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT+M SAT+ + + N I
Sbjct: 172 HKAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAA 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 200 EM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLEEA 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT +
Sbjct: 245 EYRQVIIFTATRDDTERLTAKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G VS+ + K+++
Sbjct: 305 VASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETY 364
Query: 532 LAVPIQACEFTE 543
L + F +
Sbjct: 365 LQQDLSFSVFED 376
>gi|349573623|ref|ZP_08885599.1| ATP-dependent RNA helicase RhlE [Neisseria shayeganii 871]
gi|348014782|gb|EGY53650.1| ATP-dependent RNA helicase RhlE [Neisseria shayeganii 871]
Length = 456
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 200/412 (48%), Gaps = 57/412 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL P + E L +G+ PT +QSAAIP +L HD++ + TG+GKT A++LP L
Sbjct: 2 NPFASLGLSPEITEALSEQGYEQPTAIQSAAIPKVLAGHDLLAAAQTGTGKTAAFMLPGL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ + S+ S + +++ P+REL QI + + + L GG
Sbjct: 62 ERLKRYANAST-----SPAMHPVRMLVLTPTRELADQIDQNTSAYIKNLPLRHTV-LFGG 115
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N +Q ++LR IVV T GR+ + + +VLDE D +L F + +
Sbjct: 116 VNMDKQTQSLRSG-CEIVVATVGRLLDHVQQKNIRLDKVEIVVLDEADRMLDMGFIDDIR 174
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI++ + PK +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RIMQML----------PK-------QRQTLLFSATFSPPIRKLAQDFMNQPEQVE----- 212
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
T P N ++N+N++ +H + +Q K + L R +
Sbjct: 213 -------TAPQN--------TTNANVE------------QHIIAIDTMQ-KRNLLERLIV 244
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L+ VI F + + L R + AA LHGD + +R TL FK G++RVLV
Sbjct: 245 DLNMNQVIVFCKTKQSVDQVARDLVRRQLSAAALHGDKSQQSRLETLSDFKAGQLRVLVA 304
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P+ + Y HR GRTGR G G +S+ +E E
Sbjct: 305 TDVAARGLDIAELPFVINYEMPSQAEDYVHRIGRTGRAGAEGVAISLMDEDE 356
>gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
Length = 420
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 215/424 (50%), Gaps = 60/424 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+SF LGL L +E+ GF+ PT +Q AIP +L+ DV+ + TG+GKT A+ LP+L
Sbjct: 2 SSFQHLGLSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+K L D+ ++ + +S D+ A++V P+REL Q+ + ++ K V GG
Sbjct: 62 NK---LLDQEASRDPQS---NDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTA-YGG 114
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ + Q + LR+ +++ TPGR+ + ++ +LVLDE D +L F +
Sbjct: 115 TSMNVQTQNLRQG-CDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQ 173
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI++ + NP ERQT+ SAT + A ++P+ VQ V
Sbjct: 174 RILKKL------NP-----------ERQTLFFSATFDKRIKTIAHKLMNEPVEVQ---VT 213
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P SN A++ Q + P K + K + L +
Sbjct: 214 P----------------------SNSTAEKVKQMVYPVDK--------KRKAELLAYLIG 243
Query: 410 ALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ + Q V+ F T+Q DA+ K L+ G+KAA ++GD + AR L FK+G +R L+
Sbjct: 244 SRNWQQVLVF-TKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGTIRALI 302
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+ + + VVN D+P + Y HR GRTGR G+ G VS+ + E ++++ +
Sbjct: 303 ATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGQEGLAVSLMSKDEEYLLEAI 362
Query: 529 QKQL 532
++ L
Sbjct: 363 ERLL 366
>gi|375263823|ref|YP_005026053.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. EJY3]
gi|369844250|gb|AEX25078.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. EJY3]
Length = 447
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 195/407 (47%), Gaps = 60/407 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F TE+Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKATEIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVGGA 230
LK KS + D AVI+AP+REL Q+ E++ +L G S + A+ ++GG
Sbjct: 67 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLAGLSYEAAL--ILGGE 115
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + Q +ALR+ P +V TPGR+A+ L+ G L+LDE D +L F + R
Sbjct: 116 NFNDQVKALRRY-PKFIVATPGRLADHLEHRSLYLEGLETLILDEADRMLDLGFAPELRR 174
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I R RQT+M SAT+ + + N I
Sbjct: 175 IHNAAKHR----------------RRQTLMFSATLDHAEV----------------NSIA 202
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E L+ P S SN + K Q +Y L HK L R +
Sbjct: 203 SEM--------LNAPKRISIGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLAE 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT
Sbjct: 248 AEYRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTT 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++++RGLD+A V+N D+P + Y HR GRTGR G +G +S+
Sbjct: 308 DVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 354
>gi|291447570|ref|ZP_06586960.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
gi|291350517|gb|EFE77421.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
Length = 458
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 198/414 (47%), Gaps = 51/414 (12%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F +LG+ P E LE G P +Q +P L DV+ Q+ TG+GKTL + LP+L
Sbjct: 2 TTFRDLGIFPETAEALEAVGITSPFPIQELTLPVALSGSDVIGQAKTGTGKTLGFGLPLL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDI-EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+V D + G + + TD +A++V P+REL Q+ ++ G V + G
Sbjct: 62 ERVTVPADVEA-GRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTA-GKVRNVRVLAIYG 119
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q EAL+K ++VGTPGR+ +++ KL R LVLDE DE+L F +
Sbjct: 120 GRAYEPQVEALKKGVD-VIVGTPGRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDV 178
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI+ + A+RQT++ SAT+P +VI AR + P + A
Sbjct: 179 ERIITM-----------------LPAKRQTMLFSATMPGAVISLARRYMSQPTHINA--- 218
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
T P + G++ + +Q H Y + K + L R +
Sbjct: 219 --------TSPDD-----EGTTVKNTVQ-------------HVYRAHNMD-KPEMLARIL 251
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A + F R D +LE RG + +HGDLG+ AR L+ F+NG+V VLV
Sbjct: 252 QADGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 311
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARG+DV VVN P D Y HR GRTGR G +G +++ + ++
Sbjct: 312 CTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLVDWDDI 365
>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 493
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 201/430 (46%), Gaps = 65/430 (15%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
SA A +F ELGL L E ++ G+ PT +QS +IP L+ D++ + TGSGKT +
Sbjct: 65 SATTAPKTFKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTAS 124
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
++LPIL L +K + G +++AP+REL QI + LG +
Sbjct: 125 FVLPILQA---LMEKPQSFFG----------LVLAPTRELAYQISLACES-LGATINVRS 170
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSF 282
LVGG + Q AL K KP I+V TPGR+ + + +FLV+DE D LL
Sbjct: 171 TTLVGGMDMVPQSIALGK-KPHIIVATPGRLLDHLENTKGFSLRSLKFLVMDEADRLLDM 229
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
+F + +I++ + R ER+T + SAT+ V R+
Sbjct: 230 DFGPILDKILKVLPR-----------------ERRTFLFSATLSSKVESLQRA------- 265
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
+LS P S S+S + L+ Y + +HK
Sbjct: 266 ------------------SLSNPARVSISSSKYATVE-------TLQQTYLLRPYKHKDI 300
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L +H Q+VI FM + + F L G A LHG + + AR L KF++
Sbjct: 301 YLVYLLHEFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSK 360
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+LV +++ARGLD+ D V+N DLPTDS Y HR GRT R G+ GT +S + +V
Sbjct: 361 SREILVATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDV 420
Query: 523 FVVKKMQKQL 532
+ ++++ +
Sbjct: 421 EIWQRIEAAM 430
>gi|123455589|ref|XP_001315537.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121898217|gb|EAY03314.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 598
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/470 (28%), Positives = 222/470 (47%), Gaps = 84/470 (17%)
Query: 71 KKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGF 130
+ +P +V+ ++S+ IK L P A +F EL LP + + + +
Sbjct: 93 QDFTPSSTKDEQVQFLKSNAIK-------LLASDVPSPALTFEELNLPDTITKTITDNKW 145
Query: 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKT 190
PT +QS +IP LK HD++ + TGSGKT A+L+P + +G L++ G+G
Sbjct: 146 EKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAFLIPAMVHIG-LQEPMYRGDGPI---- 200
Query: 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ--LVGGANRSRQEEALRKNKPAIVV 248
++++P+REL QI E+ K G D ++Q L GGA R Q LR + P++VV
Sbjct: 201 ---VLVLSPTRELAQQIA-EVAK--GFCDNLMIRQTCLFGGAGRGPQANDLR-HLPSLVV 253
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGR+ + G+ + FLVLDE D++L F + +I+ H+ +
Sbjct: 254 ATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISK----------- 302
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAKNVIPLESMPATGPGNLSGPM 366
+RQT+M SAT P + + A + DP +++ K++
Sbjct: 303 ------DRQTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDL------------------ 338
Query: 367 SGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ---TVIAFMNNT 423
++NSN++ +TK + + + L +C+ L+ +I F
Sbjct: 339 ---TTNSNIKQ---------------VITKCE-EFEKLSKCLEVLNEHKDDKIIIFTKTK 379
Query: 424 RQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECD 483
R D L +G +A LHGD + R L KF++ + +LV +++ARGLDV + D
Sbjct: 380 RTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGILVATDVAARGLDVNDID 439
Query: 484 LVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLA 533
+V+N D P D Y HR GRT R + G V+ + K M ++LA
Sbjct: 440 IVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDEN----KNMSRKLA 485
>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 439
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 196/426 (46%), Gaps = 65/426 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + P ++ + G+ PT +Q+ AIP I+ HD++ + TG+GKT A+ LPIL +
Sbjct: 3 FQQFSFHPKVVAGINALGYTTPTPIQAQAIPKIMAGHDLMGLAQTGTGKTAAFALPILHR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+++AP+REL QI + +L + K++ + GG N
Sbjct: 63 L------------MQGPRKQVRALVIAPTRELAEQINDAMLELGQQTRLKSI-TVYGGVN 109
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q E L KN IVV PGR+ + G + LVLDE D++ F + RI
Sbjct: 110 VNPQIEKL-KNGVEIVVACPGRLLDHINQGTIDLTNLELLVLDEADQMFDMGFLPDIRRI 168
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++H + A+RQT++ SAT+P + AR DP VQ NV P
Sbjct: 169 LKH-----------------LPAQRQTMLFSATMPAEIRGLAREILRDPATVQVDNVAP- 210
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
A +L P +H K L + +
Sbjct: 211 -------------------------AATVSHALYPVAQHL--------KTPLLMQLLKHT 237
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D +V+ F + K +LE G AA L G+L + R + F+NG ++LV +
Sbjct: 238 DTDSVLIFTRTKHRAKRVGEQLEKAGYTAASLQGNLSQNRRQAAMDGFRNGTYQILVATD 297
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARG+DV++ V+N D+P S Y HR GRTGR R G ++ + + +VK +++
Sbjct: 298 IAARGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNGDAFTMVTDEDTLMVKAIERT 357
Query: 532 LAVPIQ 537
L I+
Sbjct: 358 LGAAIE 363
>gi|304312547|ref|YP_003812145.1| ATP-dependent RNA helicase, RhlB [gamma proteobacterium HdN1]
gi|301798280|emb|CBL46502.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
HdN1]
Length = 716
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/436 (30%), Positives = 210/436 (48%), Gaps = 56/436 (12%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F L L P L + ++ GF+ T +QS A+P LK D++ ++ TG+GKT A+L+ I+
Sbjct: 266 FSALALDPRLQKGIDELGFSHCTPIQSEALPLSLKQRDIIGKAQTGTGKTAAFLITIIQT 325
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ ++ NGE A+I+AP+REL +QI ++ LL + V +VGG +
Sbjct: 326 LLTEPEQEERYNGEP------RALILAPTRELALQIEKDALPLLKHTSLNMVS-IVGGMD 378
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+Q++ L+ IVVGTPGR+ + L LV+DE D +L F + R+
Sbjct: 379 YKKQQKHLQDEIVDIVVGTPGRLIDFVRGKDLFLSETEILVIDEADRMLDMGFIPDVKRL 438
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
V ++ RQT++ SAT +I A +W DP ++ I
Sbjct: 439 VRETPYKTY---------------RQTLLFSATFTRDIINLASNWTTDPAQIE----IEP 479
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
ES+ +N+++ K Y VT Q K++ L +
Sbjct: 480 ESV----------------ANASVDQK------------IYIVTAEQ-KINVLYNLITQQ 510
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ V+ F+N + +D +L+A G++ A L G++ + R TL+ F+NG +RV+V +
Sbjct: 511 ELDRVMVFVNRRDETRDLTTRLKALGLRVAMLSGEIPQHKRLRTLENFRNGRLRVMVATD 570
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ RG+ + VVN LP D Y HR GRTGR G GT VS E + F++ +Q
Sbjct: 571 VAGRGIHIEGISHVVNYTLPEDPEDYVHRIGRTGRAGATGTSVSFACEEDAFLLPAIQAL 630
Query: 532 LAVPIQACEFTEGRLV 547
L IQ C + L+
Sbjct: 631 LGEEIQ-CTHPDADLL 645
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 202/414 (48%), Gaps = 69/414 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F E GL P +L + GF T +Q AIP ++ D++ Q+ TG+GKT A+ +P+++
Sbjct: 3 TFSEFGLEPKVLRAITEMGFEESTPIQEKAIPIAMEGRDLIGQAQTGTGKTAAFGIPLIN 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ K+ I A+I+ P+REL +Q+ EI+KL K ++ L G
Sbjct: 63 KI-------------DIKEERIVALIMCPTRELAIQVAEEIEKL---GRFKGIRSLPIYG 106
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + +Q ALRK KP I++GTPGR+ + + + ++LDE DE+L F E +
Sbjct: 107 GQDIVKQIRALRK-KPQIIIGTPGRLLDHINRKTIKLDDVQTVILDEADEMLDMGFMEDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I++ V P ERQT++ SAT+P ++ + A+ + +P V +V
Sbjct: 166 QSILKLV----------PD-------ERQTMLFSATMPINIQKLAQQFLSNPEHV---SV 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
IP + +S P+ DQS Y + K + L R +
Sbjct: 206 IPKQ---------VSAPL-------------IDQS--------YIELHERQKFEALCRLI 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
I F R++ + L+ RG A LHGDL + R ++KF++G + VLV
Sbjct: 236 DMEAPDLAIIFGRTKRRVDELSEALQKRGYTAEGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARGLDV+ V+N DLP D Y HR GRTGR G+ G + E+
Sbjct: 296 ATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREI 349
>gi|372272242|ref|ZP_09508290.1| ATP-dependent RNA helicase RhlB, partial [Marinobacterium stanieri
S30]
Length = 599
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/438 (29%), Positives = 212/438 (48%), Gaps = 59/438 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + GLP +L+ + F T +Q+A IP L D++ ++ TG+GKT A+L+ I++
Sbjct: 59 FHDFGLPDVLMRAIADLKFEYCTPIQAATIPHALNGRDLIGKAQTGTGKTAAFLIGIITD 118
Query: 172 V--GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ PL GE +K + A+I+AP+REL +QI + + L +D V LVGG
Sbjct: 119 LLDFPLP-------GEP-RKNEPRALIIAPTRELALQIASDAEGLSAHADLSVVS-LVGG 169
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ +AL I+V TPGR+ + + ++ + LVLDE D +LS F +
Sbjct: 170 MDYERQRKALAAKPVDILVATPGRLIDFVRSKEVDLYQVEVLVLDEADRMLSMGFIPDVR 229
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ R+ A+RQT++ SAT V+R A W DP+ ++
Sbjct: 230 TIIRQTPRKG--------------ADRQTLLYSATFTDDVMRLAEQWTQDPVTIE----- 270
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ES T N++ + SSN Q L++Y + ++
Sbjct: 271 -IESEHKT-TDNVAQKVFLVSSNEKYQ----------LLRNYLRINGIER---------- 308
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F N + + +L G+KAA + G++ + R TL+ F+NG++ VLV
Sbjct: 309 ------AIVFGNRRHETRALADRLSKDGIKAALMSGEIPQNKRLRTLEDFRNGKIEVLVA 362
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ RG+ + V+N LP D+ Y HR GRTGR G GT + E + F++ ++
Sbjct: 363 TDVAGRGIHIDGVTHVINYQLPEDADDYVHRIGRTGRAGATGTSICFACEDDSFLIPDIE 422
Query: 530 KQLAVPIQACEFTEGRLV 547
K+ V ++ C + LV
Sbjct: 423 KETGVKLE-CIHPDAELV 439
>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 594
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 199/420 (47%), Gaps = 63/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L ++ + +G+ PT++QS AIP +L NHD++ QS TG+GKT A+ LP+LS
Sbjct: 18 TFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPMLS 77
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
P K +N ++I+ P+REL MQ+ E++ + + GG+
Sbjct: 78 LTQPGDKKRTN------------SLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGS 125
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+Q L++ IVV TPGR+ + + CR +VLDE DE+L+ F E +
Sbjct: 126 PIDKQIRDLKRG-ADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEE 184
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + P+ ERQ SAT+P +++ + +
Sbjct: 185 IFSFL----------PE-------ERQFAFFSATMPKEIVKLSEKF-------------- 213
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P + S +NL + +K Y + + KVD + +
Sbjct: 214 -----------LVEPERITLSRNNLTVSR--------IKQIYYTVESRDKVDLTIQLLQL 254
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F N + + + +L G A LHGD+ + RS + +FK G V VL+
Sbjct: 255 HKTSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIAT 314
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV D+V+N D+P + +Y HR GRTGR G+ G +++ + + +K++++
Sbjct: 315 DVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIER 374
>gi|359435077|ref|ZP_09225307.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20652]
gi|357918290|dbj|GAA61556.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20652]
Length = 440
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 197/409 (48%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ + KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F E + I
Sbjct: 113 FNDQIKALR-NDPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E R RQT++ SAT+ + + A ++N+
Sbjct: 172 NEQANHRL----------------RQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P + S +N Q Q+L Y L HK L ++
Sbjct: 202 ----------LKKPKQITLSAANEQHSDIKQTL-------YLADHLDHKEALLEHFLNQE 244
Query: 412 DAQTVIAFMN---NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F +T +L +A L A+G K+ L GDL + R + F ++L+
Sbjct: 245 NVGQCIIFTATRADTSRLSEA---LNAKGFKSVALAGDLTQNKRLDIMDSFSRENFKILI 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G +S+
Sbjct: 302 TTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSLV 350
>gi|77360375|ref|YP_339950.1| DEAD/DEAH box helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76875286|emb|CAI86507.1| ATP-dependent RNA helicase, DEAD box family [Pseudoalteromonas
haloplanktis TAC125]
Length = 440
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 203/421 (48%), Gaps = 67/421 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDNRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ ++ KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F E + I
Sbjct: 113 FNDQIKALR-NDPQFVVATPGRLADHLTKRTLQLSGLELLIFDEADRILDLGFTEQLKMI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ LA RQT++ SAT+ + + A ++N+
Sbjct: 172 ND----------------LADHRLRQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P S +N Q QSL Y L HK L ++
Sbjct: 202 ----------LKKPKQIMLSAANEQHSDIKQSL-------YLADHLDHKEALLEHFLNQD 244
Query: 412 DAQTVIAFMN---NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D I F +T +L +A L A+G KA L GDL + R + F ++L+
Sbjct: 245 DVGQCIIFTATRADTSRLSEA---LCAKGFKAQPLAGDLAQNKRLDIMDAFSRENFKILI 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVV 525
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G+ +S+ + P +
Sbjct: 302 TTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGSALSLVGPKDWPSYLAI 361
Query: 526 K 526
K
Sbjct: 362 K 362
>gi|403738909|ref|ZP_10951510.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
gi|403191559|dbj|GAB78280.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
Length = 513
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/451 (28%), Positives = 209/451 (46%), Gaps = 58/451 (12%)
Query: 99 SLEIESAPFAA--NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYT 156
+++ +SAP A +F G+ P + + L G P +Q+ +P L HD++ Q+ T
Sbjct: 19 TIDADSAPEIAPGTTFASFGIHPEIADALAEHGIVAPFPIQAMTLPVALGGHDIIGQAKT 78
Query: 157 GSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216
G+GKTL + +P+L+KV +D G + +A++V P+REL +Q+ ++ + G
Sbjct: 79 GTGKTLGFGVPLLNKVVAPQDP---GYADLDYPNRPQALVVVPTRELAVQVAADLTRA-G 134
Query: 217 PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276
V+ + GG Q AL + +VVGTPGR+ +++ L+ H R +VLDE
Sbjct: 135 KRRGIRVECIYGGRAFEPQITALTRGV-EVVVGTPGRLIDLNQQRHLNLHSIRTVVLDEA 193
Query: 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
DE+L F + RI+ G P RQT++ SAT+P +V+ AR +
Sbjct: 194 DEMLDLGFLPDVERIL-------GETP----------TSRQTMLFSATMPGAVVALARRY 236
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
P ++A M+ + +QA ++ +
Sbjct: 237 MTQPTHIRA--------------------MTTGDDSHTVQA----------IEQFIYRAH 266
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
K + L R + A I F R +L RG AA LHGDLG+ AR +
Sbjct: 267 AMDKTEMLSRILQAKGRGLTIVFTRTKRTAAKVADELTDRGFAAASLHGDLGQGAREQAM 326
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+ F+ G+V VLV +++ARG+DV VVN P D Y HR GRTGR G+ G +++
Sbjct: 327 RAFRKGKVDVLVATDVAARGIDVENVTHVVNYQCPEDEKTYLHRTGRTGRAGQTGIAITL 386
Query: 517 CEEPEV----FVVKKMQKQLAVPIQACEFTE 543
+ + + K + + PI+ +E
Sbjct: 387 VDWDDFPRWSLINKALDLGITEPIETYSSSE 417
>gi|337744819|ref|YP_004638981.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336296008|gb|AEI39111.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
Length = 425
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/425 (30%), Positives = 207/425 (48%), Gaps = 73/425 (17%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LG+ L E L + G++ PT +Q AIPS+L HDV+ Q+ TG+GKTLA++LPIL
Sbjct: 4 NEFQALGISQELAEALHKHGYHEPTPIQREAIPSVLGGHDVIAQAQTGTGKTLAFVLPIL 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ P ++ ++A+IV P+REL +QI E+ + P V GG
Sbjct: 64 ESIDP-------------NRSHVQALIVTPTRELAIQITEEVARW-APLKGIRVLSAYGG 109
Query: 230 ANRSRQEEALRKNKPAI--VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
+ RQ +RK + AI +V TPGR+ + + LVLDE D++L F
Sbjct: 110 QDVERQ---IRKLEGAIHIIVATPGRLLDHLRRETVQLFKLSTLVLDEADQMLHMGF--- 163
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK- 346
+ +VE + A P RQT++ SAT+P V + A+ + P+ ++ K
Sbjct: 164 LPEVVEIIS----ATP----------TRRQTLLFSATMPERVRQLAKEYMKPPVEIEVKA 209
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAK-QADQSLPPALKHYYCVTKLQHKVDTLR 405
+ L+ + + ++ L A +A + PP L +C TKL+
Sbjct: 210 KRVTLDEIEQI--------VVQTTDRGKLDALCKAMEEDPPFLGMIFCRTKLR------- 254
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+L+D +L+ RG ELHGDL + R +K+F++ +++
Sbjct: 255 -----------------ATKLRD---ELDERGYAVDELHGDLTQAKREQVMKRFRDAKIQ 294
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
LV +++ARGLDV V N D+P D+ Y HR GRTGR G+ G ++ + F +
Sbjct: 295 FLVATDIAARGLDVEGITHVYNYDIPHDAESYIHRIGRTGRAGQTGKAITFTAPRDAFYL 354
Query: 526 KKMQK 530
+ ++K
Sbjct: 355 EAIEK 359
>gi|32490970|ref|NP_871224.1| hypothetical protein WGLp221 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166176|dbj|BAC24367.1| deaD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 583
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 201/425 (47%), Gaps = 70/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL +L L G+ P+ +Q IP +LK +DV+ + TGSGKT A+ LP+L+
Sbjct: 7 SFSELGLKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLLN 66
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ LK K + +I+ P+REL +QI L + + L GG
Sbjct: 67 NID-LKLKLP------------QIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQ 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N S Q ++L++N P IVVGTPGRI ++ L+ VLDE DE+L F E
Sbjct: 114 NYSIQIKSLKRN-PQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIED--- 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
VE++ +S + QTI+ SAT+P ++ R + + P ++ K
Sbjct: 170 -VENIFLKSS-------------KQHQTILFSATMPAAIHRITKRFMKKPKEIRIK---- 211
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
A ++ P +K Y + K++ L R +
Sbjct: 212 -----------------------------ASENTRPNIKQNYWIVYGLCKIEALLRFLEV 242
Query: 411 LDAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
VI F+ N T ++ D LE G ++ L+GD+ ++ R TL +FK G + +L
Sbjct: 243 EIFDAVIIFVRTKNATLEVSDV---LEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDIL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLDV LV+N D+P D Y HR GRTGR GR G + E E ++
Sbjct: 300 VATDVAARGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYN 359
Query: 528 MQKQL 532
+++ +
Sbjct: 360 IERNI 364
>gi|379710610|ref|YP_005265815.1| ATP-dependent RNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374848109|emb|CCF65181.1| ATP-dependent RNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 591
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 204/431 (47%), Gaps = 64/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LG+ +L + G+ P+ +Q+A IP +L DVV + TG+GKT A+ +PIL
Sbjct: 20 TFADLGIDDRILRAIADVGYESPSPIQAATIPPLLAGADVVGLAQTGTGKTAAFAIPILM 79
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ P +GK A+++AP+REL +Q+ + V + GG
Sbjct: 80 GLEP-----------TGKAP--RALVLAPTRELAIQVAEAFGRYATHIPGLHVLPIYGGQ 126
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ +VVGTPGR+ + G L ++LVLDE DE+L F+E + R
Sbjct: 127 SYGVQLSGLRRGA-HVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVER 185
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ A++Q + SAT+P ++ + ++ + HDP+ + K
Sbjct: 186 ILADTP-----------------ADKQVALFSATMPAAIRKISKQYLHDPVEITVK---- 224
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ +S+N+N+ + + Q K+D L R +
Sbjct: 225 ----------------AKTSTNTNITQR-------------WVQVSHQRKLDALTRILEV 255
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ +I F+ + ++ KL ARG AA ++GD+ + R T+ + K G + +LV
Sbjct: 256 ESFEAMIIFVRTKQATEELAEKLRARGFSAAAINGDIAQAQRERTIGQLKAGTLDILVAT 315
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E ++K +++
Sbjct: 316 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVAPRERHLLKAIER 375
Query: 531 QLAVPIQACEF 541
P+ +
Sbjct: 376 ATRHPLTEMQL 386
>gi|336066886|ref|YP_004561744.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296832|dbj|BAK32703.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 584
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 199/420 (47%), Gaps = 63/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L ++ + +G+ PT++QS AIP +L NHD++ QS TG+GKT A+ LP+LS
Sbjct: 2 TFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPMLS 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
P K +N ++I+ P+REL MQ+ E++ + + GG+
Sbjct: 62 LTQPGDKKRTN------------SLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGS 109
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+Q L++ IVV TPGR+ + + CR +VLDE DE+L+ F E +
Sbjct: 110 PIDKQIRDLKRG-ADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEE 168
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + P+ ERQ SAT+P +++ + +
Sbjct: 169 IFSFL----------PE-------ERQFAFFSATMPKEIVKLSEKF-------------- 197
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P + S +NL + +K Y + + KVD + +
Sbjct: 198 -----------LVEPERITLSRNNLTVSR--------IKQIYYTVESRDKVDLTIQLLQL 238
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F N + + + +L G A LHGD+ + RS + +FK G V VL+
Sbjct: 239 HKTSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIAT 298
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV D+V+N D+P + +Y HR GRTGR G+ G +++ + + +K++++
Sbjct: 299 DVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIER 358
>gi|254506018|ref|ZP_05118163.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
gi|219551241|gb|EED28221.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
Length = 454
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 137/439 (31%), Positives = 202/439 (46%), Gaps = 61/439 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F TE+Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 14 FKDLGLDNRLLKNLKHLDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 73
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK K+ + D AVI+AP+REL Q+ E++ +L A +VGG N
Sbjct: 74 --SLKSKAFSAK-------DPRAVILAPTRELAKQVYGELRTMLAGLSYDATL-IVGGEN 123
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALRK P +V TPGR+A+ L G LVLDE D +L F + RI
Sbjct: 124 FNDQVKALRKY-PKFIVATPGRLADHLEHRSLFLEGLETLVLDEADRMLDLGFAPELRRI 182
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT+ + + N I
Sbjct: 183 HNAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAF 210
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 211 EM--------LNAPKRIAVGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLQEA 255
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + +I F KL + +KA L G+L + R+T + +F+ ++LVT +
Sbjct: 256 EYKQIIIFTATRADTDRLTEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTD 315
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G +S+ + K+++
Sbjct: 316 VASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEAY 375
Query: 532 LAVPIQACEFTEGRLVIGK 550
L Q F+E + GK
Sbjct: 376 LQ---QDLSFSELEGLKGK 391
>gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
H10]
Length = 542
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/444 (28%), Positives = 207/444 (46%), Gaps = 65/444 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N+F ELG+ +L+ ++ GF PTEVQS AIP IL N D+++ S TGSGKT + + IL
Sbjct: 3 NTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSIL 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
P E+G + +I+ P+REL +Q+ +I+K+ K + G
Sbjct: 63 QLTNP---------EEAGP----QGLILTPARELAVQVDNDIRKM-AKYLKHKTTAIYGQ 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N + + + L K +IV GTPGR+ + + G L T RFLVLDE D +L F + +
Sbjct: 109 HNINLETQILNKGV-SIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVV 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RIV+ + PK ER T++ SAT+P + + + ++P+ ++
Sbjct: 168 RIVKTL----------PK-------ERITLLFSATMPPEIHNICKRYMNNPVTIE----- 205
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ES Q K D + Y K L R +
Sbjct: 206 -IES----------------------QTKTVD-----TIHQVYYRVNYNEKNTQLNRLLI 237
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++ + F N + L +G + LHGD+ + R T+++FK G+ +LV
Sbjct: 238 VEKPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVA 297
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+ + + LV+N D+P D +Y HR GRTGR G G S+ ++ + +++
Sbjct: 298 TDVAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIE 357
Query: 530 KQLAVPIQACEFTEGRLVIGKEEE 553
+ + I E + EE
Sbjct: 358 EHIGTLILEEELPDEEAFTKAREE 381
>gi|410662990|ref|YP_006915361.1| ATP-dependent RNA helicase DeaD [Simiduia agarivorans SA1 = DSM
21679]
gi|409025347|gb|AFU97631.1| ATP-dependent RNA helicase DeaD [Simiduia agarivorans SA1 = DSM
21679]
Length = 612
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 204/438 (46%), Gaps = 64/438 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF EL L P +L+ + G+ P+ +Q+ AIP +L+ HD++ + TG+GKT A+ LP+L
Sbjct: 7 TSFAELALTPAILKAVAELGYEQPSPIQAQAIPLLLEGHDILGVAQTGTGKTAAFALPLL 66
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++V P + +++AP+REL +Q+ ++ V L GG
Sbjct: 67 TRVNPAIQAP-------------QVLVLAPTRELAIQVAEAFQRYACHMPGFHVLPLYGG 113
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ Q L++ ++VGTPGR+ + L + + +VLDE DE+L F + +
Sbjct: 114 QDMRAQLRQLQRGA-QVIVGTPGRVMDHLRRESLVLNQLQAIVLDEADEMLRMGFIDDVE 172
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+EH PK +RQT + SAT+P + + A S+ + P V+
Sbjct: 173 WILEHT----------PK-------QRQTALFSATMPPPIKKVADSYLNAPKEVKI---- 211
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P S + SN ++ Y + HK+D L R +
Sbjct: 212 --------------SPESSTGSN---------------IEQRYQMVSGHHKLDALTRILE 242
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
D +I F+ + KLEARG AA ++GD+ + R T+ + K G + +LV
Sbjct: 243 VEDFDAMIIFVRTKTATVELAEKLEARGFSAAAINGDMAQNLRERTIDRLKRGSLDILVA 302
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV V+N D+P DS Y HR GRTGR GR G + E ++ ++
Sbjct: 303 TDVAARGIDVERVSHVMNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLFAIE 362
Query: 530 KQLAVPIQACEFTEGRLV 547
+ I+ E G V
Sbjct: 363 RATQQKIEMMELPTGDTV 380
>gi|340786652|ref|YP_004752117.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551919|gb|AEK61294.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 468
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 136/453 (30%), Positives = 208/453 (45%), Gaps = 72/453 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGL +++ L G+ PT VQ AIP+ ++ D+++ S TGSGKT A++LP L
Sbjct: 2 TFESLGLHTSVIKALTEAGYTKPTGVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPALH 61
Query: 171 K------VGP----------LKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214
K V P ++ S G K + +++ P+REL +Q+ K
Sbjct: 62 KFASEQQVAPAAAGKTPNQEMQASRSRGERPRFKPAQPKMLVLTPTRELALQVTTATDKY 121
Query: 215 LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLD 274
+ ++GG +Q + L KN P I+V TPGR+ + +GK+ + LVLD
Sbjct: 122 GSHMKRVKAISILGGMPYPKQMQLLAKN-PEILVATPGRLIDHMESGKIDFSQLQILVLD 180
Query: 275 EIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAAR 334
E D +L F + + +IV+ A P RQT++ SAT+ V A+
Sbjct: 181 EADRMLDMGFIDDIEKIVD-------ATPES----------RQTMLFSATLDGVVGNMAK 223
Query: 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSS-NSNLQAKQADQSLPPALKHYYC 393
+P+++Q ++GS++ + N+Q K +
Sbjct: 224 RITKNPMIIQ---------------------IAGSATKHENIQQK------------VHF 250
Query: 394 VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARS 453
V L HK L + + + F R +L G AA LHGD+ + AR+
Sbjct: 251 VDDLSHKNRLLDHLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARN 310
Query: 454 TTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTV 513
TL + G+VRVLV +++ARG+DV V N DLP Y HR GRTGR GR G
Sbjct: 311 RTLDSLRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGVA 370
Query: 514 VSICEEPEVFVVKKMQ---KQLAVPIQACEFTE 543
VS+ E VK+++ KQL +P+ E E
Sbjct: 371 VSLVNHAEGVNVKRIERFTKQL-IPVDVVEGFE 402
>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823346|ref|YP_007416511.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448276843|gb|AGE36267.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 778
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 201/435 (46%), Gaps = 64/435 (14%)
Query: 96 VKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSY 155
V + E E+ F +LGL P + + + GF P+ +Q IP ++ DVV +
Sbjct: 117 VAQDNEQENKDDDGAGFGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQ 176
Query: 156 TGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL 215
TG+GKT A+ LPILS++ LK + +A+++AP+REL +Q+ +
Sbjct: 177 TGTGKTAAFALPILSRLN-LKSRKP------------QALVLAPTRELALQVAESFEDFA 223
Query: 216 GPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDE 275
+ + GG Q LR+ +VVGTPGR+ + G L RF+VLDE
Sbjct: 224 EKMGGVNILPIYGGQPYGAQLSGLRRGA-HVVVGTPGRVIDHLQKGSLDISELRFMVLDE 282
Query: 276 IDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARS 335
DE+L+ F+E + RI+E P+ ++Q + SAT+P ++ ++
Sbjct: 283 ADEMLNMGFQEDVERILEDT----------PE-------DKQVALFSATMPSAIRHLSKR 325
Query: 336 WGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVT 395
+ + P V K+ Q ++ Y +
Sbjct: 326 YLNSPQEVTVKST---------------------------------QRTAENIEQDYLIV 352
Query: 396 KLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455
+ K+D L R + D +I F+ ++ +L ARG +AA ++GD+ + R T
Sbjct: 353 HHREKLDALTRILEVTDFDAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERT 412
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
+ + K+G + +LV +++ARGLDV V N D+P D+ Y HR GRTGR GR G V
Sbjct: 413 VDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVL 472
Query: 516 ICEEPEVFVVKKMQK 530
E ++K +++
Sbjct: 473 FVTPRERRMLKSIER 487
>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
[Xanthomonas albilineans GPE PC73]
Length = 657
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/430 (28%), Positives = 216/430 (50%), Gaps = 64/430 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL +++ + G+ P+ +Q+A IP++L D++ Q+ TG+GKT A+ LPILS+
Sbjct: 11 FADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSR 70
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + K +A+++AP+REL +Q+ + V + GG
Sbjct: 71 LDFAQRKP-------------QALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQP 117
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+Q AL++ +VVGTPGR+ + G L + LVLDE DE+L F + + +
Sbjct: 118 YVQQLSALKRGV-HVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAV 176
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + P+S RQ + SAT+P ++ R A+++ +DP A+ +I
Sbjct: 177 LKKL----------PQS-------RQVALFSATMPAAIKRIAQTYLNDP----AEVII-- 213
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S +++++N++ + Y+ V+ L HK+D L R +
Sbjct: 214 --------------ASKTTTSANIR------------QRYWAVSGL-HKLDALTRILEVE 246
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+I F + KL+ARG+ AA ++GD+ + R +++ K+G++ +LV +
Sbjct: 247 PFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVATD 306
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLDV V+N D+P D+ Y HR GRTGR GR G + E +++ +++
Sbjct: 307 VAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAIERA 366
Query: 532 LAVPIQACEF 541
PI+ +
Sbjct: 367 TRQPIEEMQL 376
>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 447
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 204/432 (47%), Gaps = 63/432 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F E L LL+ L G PTE+Q AIP L D++ S TGSGKTLA+LLP + +
Sbjct: 3 FTEFSLDARLLQSLSHMGITTPTEIQEMAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ K S K D +I+ P+REL Q+ +++ L+ + KA++ ++GG N
Sbjct: 63 IISTKALS---------KRDPRVLILLPTRELANQVYSQLRLLVANTQYKALK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +AL ++ P VV TPGR+A+ A H +G L+LDE D +L F + + I
Sbjct: 113 FNDQAKALARD-PHFVVATPGRLADHLAQHHFHLNGLELLILDEADRMLDLGFADQLKAI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+A A RQT+M SAT+ + I S LL K+V
Sbjct: 172 ----------------NAAADHKRRQTLMFSATLNHNEINEIAS----ELLKDPKHV--- 208
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
A G N+ N ++ K Y L HK L+ +
Sbjct: 209 ----AVGASNIE--------NQDITQK------------IYLCDHLDHKEALLQSILKRG 244
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + VI F TRQ D + K L G A L GDL + AR+ + +F G +LVT
Sbjct: 245 EQKQVIIF-TATRQDTDRLAKKLAEEGFNTASLSGDLNQSARNQIMDQFSRGMQDILVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+ LV+N D+P + Y HR GRT R G +G +S + K++Q+
Sbjct: 304 DVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTARAGAKGDAISFVGPKDWVNFKQVQQ 363
Query: 531 QLAVPIQACEFT 542
L+ + EF+
Sbjct: 364 FLS---KTFEFS 372
>gi|153831607|ref|ZP_01984274.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
gi|148872117|gb|EDL70934.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
Length = 443
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 201/432 (46%), Gaps = 58/432 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK KS + D AVI+AP+REL Q+ E++ +LG A ++GG N
Sbjct: 63 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLGGLTYDAA-LILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L G LVLDE D +L F + RI
Sbjct: 113 FNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT+M SAT+ + + N I
Sbjct: 172 HKAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAS 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 200 EM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLEEA 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT +
Sbjct: 245 EYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G VS+ + K+++
Sbjct: 305 VASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETY 364
Query: 532 LAVPIQACEFTE 543
L + F +
Sbjct: 365 LQQDLNFSVFED 376
>gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
HTCC2516]
gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
HTCC2516]
Length = 406
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 202/429 (47%), Gaps = 65/429 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGL P L RL +G PT +Q+ AIP L+ DV+ + TG+GKT A+ LP++
Sbjct: 2 TFENLGLSPRLAARLAEQGLTAPTPIQTQAIPHALEGRDVLGLAQTGTGKTAAFGLPLI- 60
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ G + A+I+AP+REL QIV ++ G + +VGG
Sbjct: 61 -------QALTAAGTHAAPNTVLALILAPTRELAAQIVDSLRAFAGNGGSPRIGLVVGGK 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ + Q ALR+ I+V TPGR+ ++ L R+LVLDE D++L F A+ R
Sbjct: 114 SINAQANALRRGTD-ILVATPGRLIDLLDRKALTLGKARYLVLDEADQMLDLGFIHALRR 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I P PK ERQT++ SAT+P + A ++ DP+ VQ V P
Sbjct: 173 IA----------PLLPK-------ERQTMLFSATMPKQMSEIAGAYLTDPVRVQ---VSP 212
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
PG P + + AK A Q+L +
Sbjct: 213 --------PGK---PADKVDQSVHFVAKDAKQAL----------------------LIDL 239
Query: 411 LDA---QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
LDA + + F + + +L+ G A+ +HG+ + R+ L F+ G+VRVL
Sbjct: 240 LDAHRDERALVFARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGFREGKVRVL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N +LP +Y HR GRT R G G V+ C E E+ ++
Sbjct: 300 VATDVAARGIDIPGVGYVYNYELPNVPENYVHRIGRTARAGADGRAVAFCGEEEMGELRD 359
Query: 528 MQKQLAVPI 536
++K L PI
Sbjct: 360 IEKVLGKPI 368
>gi|402493532|ref|ZP_10840283.1| DEAD/DEAH box helicase [Aquimarina agarilytica ZC1]
Length = 600
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 126/428 (29%), Positives = 206/428 (48%), Gaps = 65/428 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPIL 169
+F LGL LL+ ++ GF P+EVQ+ AIP +L ++ D+V + TG+GKT A+ P++
Sbjct: 3 TFKTLGLGEALLQAIDAMGFVEPSEVQAKAIPILLEQDTDIVALAQTGTGKTAAFGFPLI 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
K+ P S KKT + +I++P+REL +QI +EIK K + GG
Sbjct: 63 EKIDP-----------SSKKT--QGLILSPTRELCLQIAQEIKNYSKFISKLNSVAVYGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A+ Q +++ I+V TPGR+ ++ G + + VLDE DE+L+ F E +
Sbjct: 110 ASIHDQARDIKRG-AQIIVATPGRMQDMINRGLVDISQIGYCVLDEADEMLNMGFYEDIT 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I+ H P E+ T + SAT+P V A+ + +P+ +
Sbjct: 169 KILSHT----------PD-------EKSTWLFSATMPREVATIAKKFMSNPVEITVG--- 208
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S +SSN N+ H Y V + + L+R
Sbjct: 209 -----------------SKNSSNKNVT-------------HEYYVVSARDRYPALKRLAD 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A + + F R + KL G AA LHGDL + R +K F+N ++++LV
Sbjct: 239 ANPSIFAVIFCRTKRDTQSIAEKLIEDGYSAAALHGDLSQNQRDLVMKSFRNRQIQMLVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV + V+N LP ++ Y HR+GRTGR G+ G + I + +V +K ++
Sbjct: 299 TDVAARGIDVNDITHVINYQLPDENETYNHRSGRTGRAGKEGVSIVITTKSDVRKIKSLE 358
Query: 530 KQLAVPIQ 537
+ L +
Sbjct: 359 RTLQTTFE 366
>gi|350265012|ref|YP_004876319.1| DEAD/DEAH box helicase family protein [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349597899|gb|AEP85687.1| DEAD/DEAH box helicase family protein [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 376
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 213/446 (47%), Gaps = 77/446 (17%)
Query: 103 ESAPFAAN--SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
++ PF N SF++ E GF PT VQ A I+ DV+ +S TG+GK
Sbjct: 3 QTWPFLHNAQSFIQ--------ENWNASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGK 54
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
TLAY LP+L ++ P + + VI+APSREL MQI + I+ S+
Sbjct: 55 TLAYALPVLERIKP-------------DQKHPQTVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+A L+GGAN +Q E L+K+ P I+VGTPGR+ E+ KL H + +VLDE D+L+
Sbjct: 102 RAA-SLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKTKKLKMHEVKTIVLDETDQLV 159
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
RE + +I++ R +RQ + SAT+ R H+P
Sbjct: 160 LPEHRETIKQIIKTTLR-----------------DRQLLCFSATLKKETEDVLRELTHEP 202
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
++ NV + S +A + +KH Y + + K
Sbjct: 203 EIL---NV----------------------ARSKAEAGK--------VKHQYLICDQRDK 229
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
V L++ + L+ + F+ + L KL + LH + K+ R+ +K F+
Sbjct: 230 VKLLQK-LSRLEGMQALVFVRDIGNLSVYAEKLAYHHVDLGILHSEAKKMERAKIIKAFE 288
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
GE +L+ +++ARGLD+ V++ D+P D Y HR+GRTGR G+ G V+S+ +
Sbjct: 289 QGEFPLLLATDIAARGLDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKL 347
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRL 546
E +KKM K+L V + + G+L
Sbjct: 348 EESKLKKMAKKLGVELSEAVYAGGKL 373
>gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
Length = 443
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 206/433 (47%), Gaps = 60/433 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVGGA 230
LK KS + D AVI+AP+REL Q+ E++ +L G S + A+ ++GG
Sbjct: 63 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLAGLSYEAAL--ILGGE 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + Q +ALR+ P +V TPGR+A+ L+ G L+LDE D +L F + R
Sbjct: 112 NFNDQVKALRRY-PKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + R RQT+M SAT+ + + N I
Sbjct: 171 IHKAAKHR----------------RRQTLMFSATLDHADV----------------NEIA 198
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 199 AEM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILDRVLSE 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT
Sbjct: 244 AEYRQVIIFTATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+A V+N D+P + Y HR GRTGR G +G +S+ + K+++
Sbjct: 304 DVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEA 363
Query: 531 QLAVPIQACEFTE 543
L ++ F +
Sbjct: 364 YLQQDLEFSVFED 376
>gi|388599353|ref|ZP_10157749.1| ATP-dependent RNA helicase [Vibrio campbellii DS40M4]
Length = 447
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 135/432 (31%), Positives = 203/432 (46%), Gaps = 58/432 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK KS + D AVI+AP+REL Q+ E++ +LG A ++GG N
Sbjct: 67 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLGGLTYDAA-LILGGEN 116
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L G LVLDE D +L F + RI
Sbjct: 117 FNDQVKALRR-YPKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRI 175
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R+ + R RQT+M SAT+ + + N I
Sbjct: 176 -----HRAAKHRR-----------RQTLMFSATLDHAEV----------------NDIAS 203
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 204 EM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLEEA 248
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT +
Sbjct: 249 EYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTD 308
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G VS+ + K+++
Sbjct: 309 VASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETY 368
Query: 532 LAVPIQACEFTE 543
L + F +
Sbjct: 369 LQQDLNFSVFED 380
>gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
Length = 422
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 216/432 (50%), Gaps = 66/432 (15%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
SAP ++ FL LG+ P L+ERL G + PTE+Q+ AIP +L+ DV+ + TG+GKT A
Sbjct: 2 SAP--SSPFLPLGIAPALVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAA 59
Query: 164 YLLPILSKV--GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKK 221
+ LP++ + PL+ + ++ DI A+++ P+REL Q+ ++ S+ K
Sbjct: 60 FGLPLIQRFVDHPLQREPNS--------KDIRALVLVPTRELAQQVFDNLQSYAQGSELK 111
Query: 222 AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLS 281
V GG + + Q++ LR I++ TPGR+ + + L+ LVLDE D +L
Sbjct: 112 IVTAY-GGTSMNVQKQNLRGGAD-ILIATPGRLLDHAHVKTLYLGNAEALVLDEADRMLD 169
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
F + R++ M+ ERQT+ SAT + A +P+
Sbjct: 170 MGFMPDIQRVLRK-----------------MQHERQTLFFSATFDSKIKAFAHRMMQNPV 212
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
VQ V P SN A +Q + P K + K
Sbjct: 213 EVQ---VAP----------------------SNSTADTVEQMVYPVDK--------KRKR 239
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFK 460
+ L + + + Q V+ F T+Q DA+ + L+ G+KAA ++GD + AR L FK
Sbjct: 240 ELLAYLIGSRNWQQVLVF-TRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFK 298
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+G+VR L+ +++ARG+D+A+ + VVN D+P + Y HR GRTGR G+ G VS+
Sbjct: 299 SGKVRALIATDVAARGIDIAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHD 358
Query: 521 EVFVVKKMQKQL 532
E +++ +++ L
Sbjct: 359 EQPLLEAIERLL 370
>gi|269962799|ref|ZP_06177140.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
gi|269832489|gb|EEZ86607.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
Length = 447
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 201/432 (46%), Gaps = 58/432 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK KS + D AVI+AP+REL Q+ E++ +LG A ++GG N
Sbjct: 67 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLGGLSYDAA-LILGGEN 116
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L G L+LDE D +L F + RI
Sbjct: 117 FNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLILDEADRMLDLGFAPELRRI 175
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT+M SAT+ + + N I
Sbjct: 176 HKAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAS 203
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 204 EM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLEEA 248
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT +
Sbjct: 249 EYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTD 308
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G VS+ + K+++
Sbjct: 309 VASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETY 368
Query: 532 LAVPIQACEFTE 543
L + F +
Sbjct: 369 LQQDLNFSVFED 380
>gi|424044145|ref|ZP_17781768.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
gi|408888674|gb|EKM27135.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
Length = 443
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 201/432 (46%), Gaps = 58/432 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK KS + D AVI+AP+REL Q+ E++ +LG A ++GG N
Sbjct: 63 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLGGLSYDAA-LILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L G L+LDE D +L F + RI
Sbjct: 113 FNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLILDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT+M SAT+ + + N I
Sbjct: 172 HKAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAS 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 200 EM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLEEA 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT +
Sbjct: 245 EYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G VS+ + K+++
Sbjct: 305 VASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETY 364
Query: 532 LAVPIQACEFTE 543
L + F +
Sbjct: 365 LQQDLNFSVFED 376
>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
Length = 471
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 206/424 (48%), Gaps = 70/424 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F EL L L+ L GF T +Q AIP+ L DV+ Q+ TG+GKT A+ +P++
Sbjct: 2 TTFQELSLSNATLKALAGMGFEEATPIQEQAIPAALAGKDVIGQAQTGTGKTAAFGIPMI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--V 227
+ G+G DI+ +++ P+REL +Q+ E+ ++ + + + L
Sbjct: 62 ENI-------DAGSG------DIQGIVITPTRELAVQVAEELNRI---GEFRGIHTLPIY 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFNFRE 286
GG + RQ L K +P I+VGTPGR+ + K + R +VLDE DE+L F E
Sbjct: 106 GGQDIKRQINGL-KRRPQIIVGTPGRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIE 164
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ I++ R P+ RQT++ SAT+P + + A + DP + K
Sbjct: 165 DIEEILK----------RTPEG-------RQTLLFSATIPAPIRKLAERFMKDPQTIGIK 207
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ +SM +G +QA YY V + +HK + L R
Sbjct: 208 S----KSMTVSG------------------TEQA----------YYEVPE-KHKFEVLCR 234
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ I F+ R++ + L RG A +HGDL + R + ++ FK G V
Sbjct: 235 LLDVQLPALAIVFVRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEV 294
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLD++ V NLD+P D Y HR GRTGR G++GT ++ E+ +++
Sbjct: 295 LVATDVAARGLDISGVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMGLLR 354
Query: 527 KMQK 530
++K
Sbjct: 355 FIEK 358
>gi|156976352|ref|YP_001447258.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
gi|156527946|gb|ABU73031.1| hypothetical protein VIBHAR_05125 [Vibrio harveyi ATCC BAA-1116]
Length = 447
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 201/432 (46%), Gaps = 58/432 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK KS + D AVI+AP+REL Q+ E++ +LG A ++GG N
Sbjct: 67 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLGGLTYDAA-LILGGEN 116
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L G LVLDE D +L F + RI
Sbjct: 117 FNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRI 175
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT+M SAT+ + + N I
Sbjct: 176 HKAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAS 203
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 204 EM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLEEA 248
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT +
Sbjct: 249 EYRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTD 308
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G VS+ + K+++
Sbjct: 309 VASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETY 368
Query: 532 LAVPIQACEFTE 543
L + F +
Sbjct: 369 LQQDLNFSVFED 380
>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 503
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 205/427 (48%), Gaps = 60/427 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F +LG+ + + LE EG P +QS A+P L D++ Q+ TG+GKT A+ LP+L
Sbjct: 18 TTFRDLGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLL 77
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+V + + G A++V P+REL +Q+ ++ D + + + GG
Sbjct: 78 QRV----------HTQPGSAKRPRALVVVPTRELAIQVAADLATASKRIDVR-IATVYGG 126
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q ALRK IVVGTPGR+ ++ L LVLDE D++L F +
Sbjct: 127 RAYEPQISALRKGVD-IVVGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIE 185
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+ + P +RQT++ SAT+P ++ +R + P ++A++
Sbjct: 186 RIL----------AKTPD-------QRQTMLFSATMPSEIVALSRKYLRRPTHIRAED-D 227
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
PL+ TG G ++ +H + L K++ L R +
Sbjct: 228 PLD----TGSGQVT-------------------------QHVFRTHPLD-KLEMLARLLQ 257
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A + + F R+ +L RG AA +HGDLG+ R L+ F+NG+V VLV
Sbjct: 258 ARNRGLTMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVLVA 317
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV + VVN + P D Y HR GRTGR GR GT V+ + E+ K +
Sbjct: 318 TDVAARGIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAGRSGTAVTFIDWQELLRWKLIN 377
Query: 530 KQLAVPI 536
+ L +P
Sbjct: 378 RALGLPF 384
>gi|119471950|ref|ZP_01614235.1| ATP-dependent RNA helicase, DEAD box family protein
[Alteromonadales bacterium TW-7]
gi|119445208|gb|EAW26499.1| ATP-dependent RNA helicase, DEAD box family protein
[Alteromonadales bacterium TW-7]
Length = 440
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 126/406 (31%), Positives = 192/406 (47%), Gaps = 58/406 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ + KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVK-VLGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F E + I
Sbjct: 113 FNDQIKALR-NDPQFVVATPGRLADHVTKRSLQLSGLELLIFDEADRILDLGFTEQLKLI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT++ SAT+ + + A ++N+
Sbjct: 172 NDEANHRL----------------RQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P + S +N Q Q+L Y L HK L +
Sbjct: 202 ----------LKKPKQITLSAANEQHSDITQTL-------YLADHLDHKEALLAHFLKQD 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ I F +L +G K+ L GDL + R + F G ++L+T +
Sbjct: 245 EVGQCIIFTATRADTSRLSEELNNKGFKSVALAGDLTQSKRLDIMDSFSRGNFKILITTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++RGLD+ V+N DLP + Y HR GRTGR G +GT +S+
Sbjct: 305 VASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGTAISLV 350
>gi|374287228|ref|YP_005034313.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
gi|301165769|emb|CBW25341.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
Length = 591
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 209/428 (48%), Gaps = 65/428 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPIL 169
+F +L LP LL LE +G+ PT++Q AIP +L K+ D V Q+ TG+GKT A+ LP+L
Sbjct: 2 NFSDLTLPESLLRALEDKGYKSPTDIQEKAIPLLLEKDTDFVGQAQTGTGKTAAFSLPLL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+K+ K D++A++++P+REL QI E+K +K + + GG
Sbjct: 62 AKI-------------DSKSGDVQAIVLSPTRELANQITEEMKSFC-KYEKIKILSVYGG 107
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q L+K +P +VVGTPGR+ ++ G L + VLDE DE+L F + +
Sbjct: 108 VPLDGQIRTLKKGRPQVVVGTPGRVLDLIKRGVLKLENAKLAVLDEADEMLDMGFIDDVK 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ +G + ++T M SAT+P +++ +S+ ++P VI
Sbjct: 168 TILSELGDK-----------------KKTWMYSATMPKAILSLIKSYLNEP------EVI 204
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+E + SN +++ K Y + K + + + R +
Sbjct: 205 KIEKK--------------TLSNEDIEQK-------------YFLIKRGNLGEAVCRILD 237
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+L I F K + RG + LHGD+ + R T++ FK +V++LV
Sbjct: 238 SLTDYYGIVFCRTKIDAKKLSDEFNYRGFPSDALHGDMSQTQRDLTMRAFKKKKVKLLVC 297
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV V+N LP D Y HR GRTGR G++G ++ + E F ++ ++
Sbjct: 298 TDVAARGIDVDNLTHVINYGLPQDLESYVHRIGRTGRAGQKGCAYTVIDSSEKFRIRMLE 357
Query: 530 KQLAVPIQ 537
+ + I+
Sbjct: 358 RLMNTKIE 365
>gi|86159465|ref|YP_466250.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775976|gb|ABC82813.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 565
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 136/435 (31%), Positives = 202/435 (46%), Gaps = 64/435 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELG P L LER G++ PT VQ A L+ D+++ S TGSGKT+A+ L +
Sbjct: 2 TFTELGAHPALARALERRGYSEPTAVQEAVFTPGLRGRDLLVSSATGSGKTVAFGLVLGG 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G +G + +VAP+REL MQ+ RE+ LL ++ + V VGG
Sbjct: 62 S----LLGDAPAFGPAGLPLGL---VVAPTRELAMQVQRELAWLLAEAEGRVVA-CVGGM 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ R+ AL + +VVGTPGR+ + G L R LVLDE DE+L FR+ +
Sbjct: 114 DARREARAL-SDGAHLVVGTPGRLLDHHRRGALDLSDLRALVLDEADEMLDMGFRDELEA 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ A P R+TIM SAT+P ++ AR + DP V A
Sbjct: 173 IL-------AAAPEG----------RRTIMFSATLPKPIVELARRYTTDPARVAAT---- 211
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
P G+ ++ +A + P+ + V L+ A
Sbjct: 212 --------------PAGGAHADIAFRA----HLVAPSERELAVVNVLR-----------A 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
L+ + F L RG A + G+L + R+ L ++G RVLV
Sbjct: 243 LEPPRALVFRATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ DLV++ DLP D HR+GRTGR GR+G V + PE + +++M +
Sbjct: 303 DVAARGLDLPGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERMLR 362
Query: 531 QLAV-----PIQACE 540
V P+ A E
Sbjct: 363 DAGVRVEWAPVPAAE 377
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 210/421 (49%), Gaps = 58/421 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ++ L + +E GF P+ +Q+ AIP +L+ DV+ Q+ TG+GKT A+ +P++ +
Sbjct: 24 FTDMNLSDEVKRAVEVMGFESPSPIQAEAIPHLLEGKDVIGQAQTGTGKTAAFGIPLIER 83
Query: 172 VGPLKDKSSNGNGESGKKTDI-EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ +N N E + + + + +I+ P+REL +Q+ E++KL V + GG
Sbjct: 84 I-----IKANENSEFDRNSRLPKGIILCPTRELAVQVAGELEKLAKFRKDIFVTAVYGGE 138
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q LR+ IVVGTPGR + G L ++LDE DE+L+ F+E +
Sbjct: 139 SIEKQIRNLRRG-VQIVVGTPGRTIDHIKRGTLKLEEITNIILDEADEMLNMGFKEDIEL 197
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + E QT++ SAT+P +++ A+ + + P +V+ VI
Sbjct: 198 ILQQIT-----------------TEHQTVLFSATMPKPILQIAKKYQNSPEIVK---VIS 237
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E L + +QS P +Y K D L R +
Sbjct: 238 KE----------------------LTSDNIEQSFLPINPNY--------KTDVLVRLLAY 267
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++++ F N ++ + L +G A LHGDL + R+ + KF++G V++LV
Sbjct: 268 NGWESMLIFCNTKQRTDEVAETLIQKGYAAEALHGDLAQHQRNLVMNKFRHGRVQILVAT 327
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-ICEEPEVFVVKKMQ 529
+++ARG+DV + V+N D+P D +Y HR GRTGR G +G ++ I EV+ + ++
Sbjct: 328 DVAARGIDVDNVEAVINYDVPLDPEYYVHRIGRTGRAGNKGVSITFISGRREVYRLNDIE 387
Query: 530 K 530
+
Sbjct: 388 R 388
>gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis]
Length = 712
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 146/512 (28%), Positives = 225/512 (43%), Gaps = 79/512 (15%)
Query: 42 GRHHGPLTLASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLE 101
GR G + G+ + P N ++ K +PI IP+ V D + G++
Sbjct: 194 GRSKGCFKCSQEGHSARDCP-NPGAGDEKKPRAPIYIPED----VNEDELFVMGIEAGSN 248
Query: 102 IES---------------APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK 146
++ AP A SF + L PLLLE + + G+ PT VQ IP+++
Sbjct: 249 FDAYANIQVNVTGDDPIQAP--AASFQSMNLRPLLLENIVKAGYGCPTPVQKYTIPNVMN 306
Query: 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKS-SNGNGESGKKTDIEAVIVAPSRELGM 205
D++ + TGSGKT A+LLP+L + L + SN E + T +++ P+REL +
Sbjct: 307 GRDIMGCAQTGSGKTAAFLLPMLHHI--LDNNCPSNAFEEPAQPT---GLVICPTRELAI 361
Query: 206 QIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHT 265
QI+RE +K S K GGA + + I+V TPGR+ + GK+
Sbjct: 362 QIMREARKFSHSSVAKCCVAY-GGAAGFHHLKTIHSG-CHILVATPGRLLDFVEKGKIVF 419
Query: 266 HGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV 325
++LVLDE D +L F ++ ++ H + A+R T+M SAT
Sbjct: 420 SSLKYLVLDEADRMLDMGFLSSIKTVINH-------------KTMTPTADRITLMFSATF 466
Query: 326 PFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLP 385
P + A ++ ++ L V + GS +N KQ
Sbjct: 467 PNEIQELASAFLNNYLFV----------------------VVGSVGAANTDVKQ------ 498
Query: 386 PALKHYYCVTKLQHKVDTLRRCVHAL---DAQTVIAFMNNTRQLKDAVFKLEARGMKAAE 442
CV K + K + C L D + ++ F+ R L + +A
Sbjct: 499 ----EVLCVPKFEKKAKLVEMCEEILINADDEKILVFVEQKRVADFVGTYLCEKNFRATT 554
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAG 502
+HGD + R L F+ G +LV ++ARGLD+ +VVN DLP + Y HR G
Sbjct: 555 MHGDRYQAQREQALTDFRTGVFNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIG 614
Query: 503 RTGRLGRRGTVVSIC-EEPEVFVVKKMQKQLA 533
RTGRLG RG +S EE +V + K + K L+
Sbjct: 615 RTGRLGNRGLSISFYDEEADVCLTKDLVKVLS 646
>gi|444428260|ref|ZP_21223602.1| ATP-dependent RNA helicase [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238494|gb|ELU50097.1| ATP-dependent RNA helicase [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 447
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 200/432 (46%), Gaps = 58/432 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK KS + D AVI+AP+REL Q+ E++ +LG A ++GG N
Sbjct: 67 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLGGLTYDAA-LILGGEN 116
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L G LVLDE D +L F + RI
Sbjct: 117 FNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRI 175
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT+M SAT+ + + N I
Sbjct: 176 HKAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAS 203
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 204 EM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILERVLEEA 248
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F + KL +KA L G+L + R+T + +F+ ++LVT +
Sbjct: 249 EYRQVIIFTATRDDTERLTNKLNENKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTD 308
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD+A V+N D+P + Y HR GRTGR G +G VS+ + K+++
Sbjct: 309 VASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETY 368
Query: 532 LAVPIQACEFTE 543
L + F +
Sbjct: 369 LQQDLNFSVFED 380
>gi|443307170|ref|ZP_21036957.1| rhlE [Mycobacterium sp. H4Y]
gi|442764538|gb|ELR82536.1| rhlE [Mycobacterium sp. H4Y]
Length = 509
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 200/428 (46%), Gaps = 61/428 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ ++ L +G P +Q +P L D++ Q+ TG GKT A+ +P+L +
Sbjct: 12 FAQLGVRDEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK-AVQQL 226
+ ++G E A+IV P+REL +Q+ ++ K L ++ +V +
Sbjct: 72 I-------TSGTAERPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPI 124
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q EALR +VVGTPGR+ ++S G L G LVLDE DE+L F
Sbjct: 125 YGGRPYEAQIEALRAGAD-VVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLP 183
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ + +RQ+++ SAT+P +I AR++ + P ++A+
Sbjct: 184 DIERILRQI-----------------PVDRQSMLFSATMPDPIITLARTFMNQPTHIRAE 226
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
P S ++ ++ +Q Y KV+ + R
Sbjct: 227 -----------------APHSAATHDTTVQ--------------YAYRAHALDKVELVSR 255
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R + +L RG +HGDLG++AR LK F+ G++ V
Sbjct: 256 ILQAEGRGATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDV 315
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 316 LVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDELTRWA 375
Query: 527 KMQKQLAV 534
+ K L +
Sbjct: 376 LIDKALGL 383
>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
succinogenes DSM 1740]
gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
succinogenes]
Length = 505
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 121/430 (28%), Positives = 201/430 (46%), Gaps = 66/430 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + G LL + GF VP+ +Q AIP +L HD++ Q+ TG+GKT A+ LPI+
Sbjct: 16 FEQFGFKENLLRGIHEAGFKVPSPIQVEAIPLVLGGHDLIAQAQTGTGKTAAFGLPIIQN 75
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK+ S IEA+I+ P+REL +QI EI K LG + + + GG
Sbjct: 76 ---LKNDGS-----------IEALIITPTRELAVQISDEIFK-LGRNCRTKTVSVYGGQA 120
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ E L K P +++ TPGR+ + +L +VLDE DE+L F + + I
Sbjct: 121 IRRQVELLEK-APQVIIATPGRLLDHLRNDRLKNFNPTTIVLDESDEMLDMGFLDDIEEI 179
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + A RQT++ SAT+P + A+ H+P +V+
Sbjct: 180 FTY-----------------LPASRQTLLFSATMPAPIKNLAQKILHNPKMVKV------ 216
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ ++NS++ + YY + + + + D + R + +
Sbjct: 217 --------------TTNETTNSDISQR------------YYIINEYERE-DAIVRLIDSE 249
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
I F ++ D +L A+G +A LHGD+ + R + FK G + +LV +
Sbjct: 250 APSKTIIFTRMKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILVATD 309
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD++ V N +P + Y HR GRTGR G++G +++ E ++++ +
Sbjct: 310 VAARGLDISNVSHVFNYHIPLNPESYVHRIGRTGRAGKKGIAITLATPLEFKEIRRISET 369
Query: 532 LAVPIQACEF 541
I+ E
Sbjct: 370 TKATIELYEI 379
>gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase [Desulfarculus baarsii DSM 2075]
gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
2075]
Length = 573
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 133/452 (29%), Positives = 216/452 (47%), Gaps = 71/452 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A F +LGL PLL + +GF PT +Q+A IP +L+ DV+ Q+ TG+GKT A+ LP+
Sbjct: 15 APGFDQLGLSPLLTAAVTEQGFTSPTPIQTAMIPLMLEGRDVIGQAQTGTGKTAAFGLPL 74
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L + P G G++ +A+++AP+REL +Q+ ++ G V + G
Sbjct: 75 LHNISP-------GVGQA------QALVLAPTRELAIQVAEALQGY-GRKMGARVMAVYG 120
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA Q LRK +VVGTPGR+ ++ L +V+DE DE+LS F +
Sbjct: 121 GAPYGLQISRLRKGVD-VVVGTPGRVLDLIGQKALRLDMVETVVIDEADEMLSMGFIADI 179
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+E A P ++RQT + SAT+P ++ + ++S+
Sbjct: 180 QAILE-------ATP----------SQRQTALFSATLPPAIRQMSQSY------------ 210
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ P S S S L + +Q YY + + + K+ L R +
Sbjct: 211 -------------MVEPQSVSVSPRQLTVEAVEQ-------RYYLLDE-RDKLAALCRLL 249
Query: 409 HALDAQTVIAFMNN---TRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ + F T QL D +L ARG A ++GDL + AR L +F+N +++
Sbjct: 250 EVEPVASALIFCRTKAGTGQLAD---ELSARGFAAEAINGDLSQEARIRVLGRFRNNQLK 306
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
+LV +++ARGLD+ + V+N D P D Y HR GRTGR GR G +S+ + +++
Sbjct: 307 LLVATDVAARGLDIDDISHVINFDPPQDPEVYVHRIGRTGRAGRDGVAISLLSPKDRWLL 366
Query: 526 KKMQKQLAVPIQACEFTEGRLVIGKEEEKTLE 557
+++ + C ++ E + LE
Sbjct: 367 ARIEAYAKARLSHCTLPTPEEIMAHREGRLLE 398
>gi|269965345|ref|ZP_06179465.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
40B]
gi|269829991|gb|EEZ84220.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
40B]
Length = 447
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 206/433 (47%), Gaps = 60/433 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVGGA 230
LK KS + D AVI+AP+REL Q+ E++ +L G S + A+ ++GG
Sbjct: 67 --SLKTKSFSAK-------DPRAVILAPTRELAKQVYGELRSMLAGLSYEAAL--ILGGE 115
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + Q +ALR+ P +V TPGR+A+ L+ G L+LDE D +L F + R
Sbjct: 116 NFNDQVKALRRY-PKFIVATPGRLADHLDHRSLYLDGLETLILDEADRMLDLGFAPELRR 174
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + R RQT+M SAT+ + + N I
Sbjct: 175 IHKAAKHR----------------RRQTLMFSATLDHADV----------------NEIA 202
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E L+ P + SN + K Q +Y L HK L R +
Sbjct: 203 AEM--------LNAPKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILDRVLSE 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + VI F + KL + +KA L G+L + R+T + +F+ ++LVT
Sbjct: 248 AEYRQVIIFTATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTT 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++++RGLD+A V+N D+P + Y HR GRTGR G +G +S+ + K+++
Sbjct: 308 DVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEA 367
Query: 531 QLAVPIQACEFTE 543
L ++ F +
Sbjct: 368 YLQQDLEFSVFED 380
>gi|409100393|ref|ZP_11220417.1| DEAD/DEAH box helicase [Pedobacter agri PB92]
Length = 448
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 215/442 (48%), Gaps = 66/442 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A SF E L +L + G+ V T +Q AI +L D+ + TG+GKT A++LPI
Sbjct: 2 AKSFEEFKLNRQILNAVADAGYTVATPIQEKAIAPVLSGQDIFGIAETGTGKTAAFVLPI 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ GE+ + A+I++P+REL MQI ++K +D +++ + G
Sbjct: 62 LMQL-------KYAQGENPR-----ALILSPTRELAMQIAEQVKLFSVYTDLRSLV-IFG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q+E + K I++ TPGR ++ AG ++T +FLVLDE D+++ F ++
Sbjct: 109 GIGPKTQKEQIAKGVD-ILIATPGRFLDLYLAGDINTQSLKFLVLDEADKMMDMGFIGSI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
HRI+E V R+ RQ ++ SAT+ V + A + ++PL+++A
Sbjct: 168 HRILEIVPRK-----------------RQNLLFSATMSDLVQKIAGDFLNNPLVIEA--- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S AT N++ Q+L Y V + K++ L+ +
Sbjct: 208 ----SAQATPAANVT------------------QAL-------YYVPNFKTKINLLQHLL 238
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAE---LHGDLGKLARSTTLKKFKNGEVR 465
+A T + T+ + D +F R + +H + G+ R ++ FK G VR
Sbjct: 239 KNDEAFTRLIIFCKTKTVADNIFSFIERRYGSENVRVIHANKGQNTRINSINSFKEGNVR 298
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV ++++RG+DV++ V+N D+P Y HR GRTGR +G ++ + E + +
Sbjct: 299 VLVATDVASRGIDVSDVSHVINFDVPIIIEDYVHRIGRTGRAFAKGDAITFATDAEKYYI 358
Query: 526 KKMQKQLAVPIQACEFTEGRLV 547
+K++K + I E EG V
Sbjct: 359 RKIEKLIRQYIPVAEIPEGVYV 380
>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
Length = 637
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 123/420 (29%), Positives = 203/420 (48%), Gaps = 64/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL +L L+ G+ PT +Q+A+I ++ D++ Q+ TG+GKT A+ LP+L
Sbjct: 7 TFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLC 66
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
V +N N + +++AP+REL +Q+ V + GG
Sbjct: 67 SV------DANLNAP-------QILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQ 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q +ALR+ P +VVGTPGR+ + G L + LVLDE DE+L F + +
Sbjct: 114 SMYQQLQALRRG-PQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEW 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+EH P+S RQ + SAT+P + R A
Sbjct: 173 ILEHT----------PES-------RQLALFSATMPEQIKRVANK--------------- 200
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+L P++ S + S+ + +Q +H +K++ L R +
Sbjct: 201 ----------HLRNPVNISIAASHTTVESIEQRFVQVSQH--------NKLEALVRVLEV 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + +I F+ + KLEARG A+ LHGD+ + AR + + K+G++ +L+
Sbjct: 243 ENTEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E+ +++ +++
Sbjct: 303 DVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIER 362
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 196/414 (47%), Gaps = 69/414 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + GL P +L+ + GF T +Q IP ++ D++ Q+ TG+GKT A+ +P++
Sbjct: 3 NFTDFGLEPKVLKAITEMGFEEATPIQEKTIPLAMQGLDLIGQAQTGTGKTAAFSIPLIH 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ ++ I A+++ P+REL +Q+ EI+KL K ++ L G
Sbjct: 63 KI-------------ETSQSKIVALVMCPTRELAIQVAEEIEKL---GRFKGIRSLPIYG 106
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + +Q AL+K +P I++GTPGR+ + + +VLDE DE+L F E +
Sbjct: 107 GQDIVKQIRALKK-RPQIIIGTPGRLLDHINRKTIRLEDVETVVLDEADEMLDMGFMEDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ V P+ ER T++ SAT+P ++ + A+ + DP Q +V
Sbjct: 166 QAILSQV----------PE-------ERHTMLFSATMPPNIQKLAQQFLRDP---QHVSV 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
IP Q P ++ Y + K + L R +
Sbjct: 206 IP------------------------------KQVSAPLIQQAYIEVHEKQKFEALCRLI 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
I F R++ + L+ RG A LHGDL + R ++KF++G + VLV
Sbjct: 236 DMEAPDLAIIFGRTKRRVDELSEALQKRGYSAEGLHGDLSQNQRDNVMRKFRDGSIDVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARGLDV+ VVN DLP D Y HR GRTGR G+ GT + E+
Sbjct: 296 ATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREI 349
>gi|326795505|ref|YP_004313325.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326546269|gb|ADZ91489.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 443
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 125/438 (28%), Positives = 209/438 (47%), Gaps = 60/438 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L LP +L+ + GF +E+Q+A +P+ L+ +D++ Q+ TG+GKT A+LL ++S
Sbjct: 63 FHDLNLPDRVLKSVSEMGFEYCSEIQAATLPATLEGYDLIGQAQTGTGKTAAFLLAMVSD 122
Query: 172 V--GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
P++++ + +I+AP+REL +QI E +K+ + LVGG
Sbjct: 123 FLDYPVEEERARNMAR--------GLIIAPTRELALQIADEAEKITQNCSLNVIS-LVGG 173
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ +Q+ AL + I+V TPGR+ + + + K + LVLDE D +LS F +
Sbjct: 174 MSYEKQKRALETERVDILVATPGRLLDFARSKKAMLNKVEVLVLDEADRMLSMGFIPDVK 233
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ + RQT++ SAT P + AR W + P V +V+
Sbjct: 234 SIIRMTPHKE---------------RRQTMLFSATFPKDIQNLARQWTYFPKEV---SVV 275
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P E+ + + + + +ADQ P L+ +
Sbjct: 276 PKEA-------------TNKNIDQVIYTVEADQKWP-----------------VLKSLIE 305
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
Q I F N + ++ L+ + A L G++ + R TLK FK+G ++VLV
Sbjct: 306 DDGNQRTIIFANRRDETRELYELLKEAKINCAILSGEVSQDKRVKTLKNFKDGRIQVLVA 365
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ RG+ V +LVVN LP D Y HR GRTGR G G VS E + F++ +++
Sbjct: 366 TDVAGRGIHVDNIELVVNYTLPEDPEDYVHRIGRTGRGGEMGKSVSFASEDDAFLIPEIE 425
Query: 530 KQLAVPIQACEFTEGRLV 547
+ I+ CE+ G +V
Sbjct: 426 GVVGEKIR-CEYMVGTVV 442
>gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
Length = 502
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 200/428 (46%), Gaps = 62/428 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+SF ELG+ ++ L G P +Q +P L D++ Q+ TG GKT A+ +P+L
Sbjct: 6 HSFAELGVRDEIVRALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGVPLL 65
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK---KLLGPSD--KKAVQ 224
+V +++ G A++V P+REL +Q+ ++ K L +D K V
Sbjct: 66 HRVSSDENRPLTGA--------PRALVVVPTRELCLQVYNDLAGAAKHLPTNDGRKFTVT 117
Query: 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
+ GG Q EALRK +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 118 SIYGGRPYEPQIEALRKGVD-VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGF 176
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+ RI++ P S RQ ++ SAT+P +I AR++ + P ++
Sbjct: 177 LPDIERILQLT----------PDS-------RQAMLFSATMPDPIITLARTFMNQPTHIR 219
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
A+ P S ++ ++ Q Y KV+ +
Sbjct: 220 AE-----------------APHSAATHDTTAQ--------------YAYRAHALDKVELV 248
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
R + A + F R + +L RG K +HGDLG+ AR LK F+ GE+
Sbjct: 249 SRILQARGRGATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRTGEI 308
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
VLV +++ARG+D+ + V+N P D Y HR GRTGR G+ G +++ + E+
Sbjct: 309 DVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDELAR 368
Query: 525 VKKMQKQL 532
+ + K L
Sbjct: 369 WEMIDKAL 376
>gi|444920089|ref|ZP_21239933.1| ATP-independent RNA helicase dbpA [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508956|gb|ELV09124.1| ATP-independent RNA helicase dbpA [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 461
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 200/420 (47%), Gaps = 64/420 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL LP L+ L+ G+ T +Q+AA+P+ILK D++ Q+ TGSGKT A+ + +L
Sbjct: 3 FSELPLPAAQLKNLQDLGYQSTTPIQAAALPAILKGKDLLGQAKTGSGKTAAFGIGVLES 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + + +A+++ P+REL Q+ +E+++L + + GG
Sbjct: 63 IDVTRFAT-------------QALVICPTRELADQVSKELRRLARYIPNLKISSICGGTP 109
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+RQ A+ ++ P I VGTPGR+ + L + LVLDE D +L F + M I
Sbjct: 110 IARQIHAMSQHPPHIAVGTPGRLLDHLKRNTLSLKSLKVLVLDEADRMLDMGFADEMDAI 169
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+EH R +RQT++ SAT P ++ + H+P+ V +
Sbjct: 170 IEHAPR-----------------QRQTLLFSATFPENIEAISARIQHNPVRVT------V 206
Query: 352 ESMPATGPG-NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E PA P + S + + P +C +T+ C
Sbjct: 207 EETPADKPNIDQSVVIVDNQGAKAATTAALLYHYAPESTVIFC--------NTIAAC--- 255
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++L+D +F+ + + LHGDL + R L +F NG RVLV
Sbjct: 256 -------------QELEDYLFE---QDIDVVSLHGDLEQRERDQVLLRFSNGSTRVLVAT 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+A+ +V+N DLP D Y HR GRTGR G+ G VS+ ++ +++++K
Sbjct: 300 DVAARGLDIADLSMVINYDLPFDPEVYVHRIGRTGRAGKTGIAVSLVVMDKLHRLQEIEK 359
>gi|399986307|ref|YP_006566656.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
gi|399230868|gb|AFP38361.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
Length = 514
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 200/428 (46%), Gaps = 62/428 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+SF ELG+ ++ L G P +Q +P L D++ Q+ TG GKT A+ +P+L
Sbjct: 18 HSFAELGVRDEIVRALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGVPLL 77
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK---KLLGPSD--KKAVQ 224
+V +++ G A++V P+REL +Q+ ++ K L +D K V
Sbjct: 78 HRVSSDENRPLTGA--------PRALVVVPTRELCLQVYNDLAGAAKHLPTNDGRKFTVT 129
Query: 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
+ GG Q EALRK +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 130 SIYGGRPYEPQIEALRKGVD-VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGF 188
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+ RI++ P S RQ ++ SAT+P +I AR++ + P ++
Sbjct: 189 LPDIERILQLT----------PDS-------RQAMLFSATMPDPIITLARTFMNQPTHIR 231
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
A+ P S ++ ++ Q Y KV+ +
Sbjct: 232 AE-----------------APHSAATHDTTAQ--------------YAYRAHALDKVELV 260
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
R + A + F R + +L RG K +HGDLG+ AR LK F+ GE+
Sbjct: 261 SRILQARGRGATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRTGEI 320
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
VLV +++ARG+D+ + V+N P D Y HR GRTGR G+ G +++ + E+
Sbjct: 321 DVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDELAR 380
Query: 525 VKKMQKQL 532
+ + K L
Sbjct: 381 WEMIDKAL 388
>gi|345851373|ref|ZP_08804349.1| helicase [Streptomyces zinciresistens K42]
gi|345637129|gb|EGX58660.1| helicase [Streptomyces zinciresistens K42]
Length = 506
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 193/413 (46%), Gaps = 49/413 (11%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F ELG+ P E LE G P +Q +P L DV+ Q+ TG+GKTL + LP+L
Sbjct: 36 TTFRELGILPETAEALEAVGIVNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLL 95
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+V D + G +A++V P+REL Q+ ++ G V + GG
Sbjct: 96 ERVTVPADVEAGRAGPDALTDAPQALVVVPTRELCQQVTNDLLTA-GKVRNVRVLAIYGG 154
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q EALRK ++VGTPGR+ +++ KL R LVLDE DE+L F +
Sbjct: 155 RAYEPQVEALRKGVD-VIVGTPGRLLDLAGQKKLDLKHIRALVLDEADEMLDLGFLPDVE 213
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I+ + A RQT++ SAT+P +VI AR + P ++A
Sbjct: 214 KIINM-----------------LPARRQTMLFSATMPGAVIGLARRYMSQPTHIRA---- 252
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ P ++ +N+ +H Y + K + + R +
Sbjct: 253 -------------TAPDDQGATVANIA------------QHVYRAHNMD-KPELVARILQ 286
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A + F R D +L+ RG + +HGDLG+ AR L+ F+NG+V VLV
Sbjct: 287 AEGRGLAMVFCRTKRTAADLADQLQQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVC 346
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARG+DV V+N P + Y HR GRTGR G GT +++ + ++
Sbjct: 347 TDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGASGTAITLVDWDDI 399
>gi|372488022|ref|YP_005027587.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359354575|gb|AEV25746.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 641
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 209/424 (49%), Gaps = 65/424 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
+ ++F +LGL +L+ L G+ P+ +Q+ IP +++ D++ + TG+GKT A+ LP
Sbjct: 4 SVDTFAQLGLSEPILQALTDVGYETPSSIQAECIPLLMEGKDLLGMAQTGTGKTAAFALP 63
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+L K+ + +A+++AP+REL +Q+ +K V +
Sbjct: 64 LLQKLDVTQRFP-------------QALVLAPTRELAIQVAEACQKYAKHLPGFHVLPIY 110
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + Q + L++ +++GTPGR+ + L + LVLDE DE+L F +
Sbjct: 111 GGQSLGIQLKQLQRGA-HVIIGTPGRVMDHLERKSLDLSRLKTLVLDEADEMLRMGFIDD 169
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I+EH+ AERQT + SAT+P + R A+ + DP V+ K
Sbjct: 170 VEWILEHIP-----------------AERQTALFSATMPEQIRRVAQKYLRDPQEVKIK- 211
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
S +S+ S +Q + Y+ V+ L HK+D L R
Sbjct: 212 -------------------SATSTVSAIQ------------QRYWQVSGL-HKLDALTRI 239
Query: 408 VHALDA-QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ D+ I F+ ++ KLEARG AA L+GD+ + +R +++ K+G + +
Sbjct: 240 MEVEDSLDAAIIFVRTKTATEELAQKLEARGYAAAALNGDMNQASRERVIEQLKSGGLDI 299
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
++ +++ARG+DV V+N D+P D Y HR GRTGR GR GT + E+ +++
Sbjct: 300 VIATDVAARGIDVPRVSHVINYDIPYDVEAYVHRIGRTGRAGRTGTAILFVSPREMRMLR 359
Query: 527 KMQK 530
++K
Sbjct: 360 TIEK 363
>gi|441205997|ref|ZP_20972788.1| DEAD-box ATP-dependent RNA helicase CshA [Mycobacterium smegmatis
MKD8]
gi|440628545|gb|ELQ90341.1| DEAD-box ATP-dependent RNA helicase CshA [Mycobacterium smegmatis
MKD8]
Length = 502
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 200/428 (46%), Gaps = 62/428 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+SF ELG+ ++ L G P +Q +P L D++ Q+ TG GKT A+ +P+L
Sbjct: 6 HSFAELGVRDEIVRALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGVPLL 65
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK---KLLGPSD--KKAVQ 224
+V +++ G A++V P+REL +Q+ ++ K L +D K V
Sbjct: 66 HRVSSDENRPLTGA--------PRALVVVPTRELCLQVYNDLAGAAKHLPTNDGRKFTVT 117
Query: 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
+ GG Q EALRK +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 118 SIYGGRPYEPQIEALRKGVD-VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGF 176
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+ RI++ P S RQ ++ SAT+P +I AR++ + P ++
Sbjct: 177 LPDIERILQLT----------PDS-------RQAMLFSATMPDPIITLARTFMNQPTHIR 219
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
A+ P S ++ ++ Q Y KV+ +
Sbjct: 220 AE-----------------APHSAATHDTTAQ--------------YAYRAHALDKVELV 248
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
R + A + F R + +L RG K +HGDLG+ AR LK F+ GE+
Sbjct: 249 SRILQARGRGATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRTGEI 308
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
VLV +++ARG+D+ + V+N P D Y HR GRTGR G+ G +++ + E+
Sbjct: 309 DVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDELAR 368
Query: 525 VKKMQKQL 532
+ + K L
Sbjct: 369 WEMIDKAL 376
>gi|427417898|ref|ZP_18908081.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425760611|gb|EKV01464.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 464
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 131/430 (30%), Positives = 203/430 (47%), Gaps = 64/430 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL + L+ GF PT +Q+ AIP +L HDVV + TG+GKT A+ LPIL
Sbjct: 4 SFADLGLSEPQAQHLDELGFKEPTPIQAQAIPHMLAGHDVVGLAQTGTGKTAAFSLPILE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+V N N K ++A+++ P+REL MQ+ + ++ L S + V + GG
Sbjct: 64 QV--------NIN-----KRSVQALVLTPTRELAMQVCQAVQGLKYNSQLR-VLPVYGGQ 109
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ RQ LR+ +VVGTPGR+ ++ + G L +LVLDE DE+L+ F + +
Sbjct: 110 SIERQLSQLRRGV-HMVVGTPGRVLDLLSRGALSFEQLSWLVLDEADEMLNMGFIQDVEN 168
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ H AERQT SAT+ ++ A + P+ V K+
Sbjct: 169 ILSHAP-----------------AERQTAFFSATMEPAIRELAAKFLKSPVTVTVKS--- 208
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
T P ++ Q +PP K L +
Sbjct: 209 ----QNTAPKRIT---------------QLAYVVPPGWS----------KPRALMPILEM 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D ++ I F+ R + +L+ G E HGDL + R L +FK G+VR +V
Sbjct: 240 EDPESAIIFVRTRRTAAELTRQLQFAGHSVDEYHGDLNQAQRERLLLRFKQGQVRWVVAT 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+ V V+N +LP + Y HR GRTGR G+ G VSI E + ++++++
Sbjct: 300 DIAARGIHVDNLTHVINYELPDNQDSYVHRIGRTGRAGQEGRAVSIVHPLEKYQLRQIER 359
Query: 531 QLAVPIQACE 540
L + C+
Sbjct: 360 HLKQELAFCK 369
>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 634
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 205/420 (48%), Gaps = 64/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL LL L+ G+ PT +Q+A+I ++ D++ Q+ TG+GKT A+ LP+L+
Sbjct: 6 TFRELGLSESLLRSLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFALPLLN 65
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ D N + +++AP+REL +Q+ V + GG
Sbjct: 66 KI----DMKINAP---------QILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQ 112
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q AL++ P ++VGTPGR+ + G L + LVLDE DE+L F + +
Sbjct: 113 SMQQQLNALKRG-PQVIVGTPGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEW 171
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++EH +P A+ Q + SAT+P + R A AK+
Sbjct: 172 VLEH----------KP-------ADSQLALFSATMPEQIKRVA-----------AKH--- 200
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
LS P++ S ++S + DQ Y +K++ L R +
Sbjct: 201 -----------LSNPVNISIASSQTTVESIDQR--------YVQVSQHNKLEALVRVLEV 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + +I F+ + KLEARG ++ LHGD+ + AR +++ K G++ +L+
Sbjct: 242 ENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P DS Y HR GRTGR GR G + E+ +++ +++
Sbjct: 302 DVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTIER 361
>gi|386845669|ref|YP_006263682.1| Pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Actinoplanes
sp. SE50/110]
gi|359833173|gb|AEV81614.1| Pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Actinoplanes
sp. SE50/110]
Length = 648
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 196/409 (47%), Gaps = 61/409 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LG+ P +E L + G +Q A+P L+ D++ Q+ TG+GKTL + LP+L
Sbjct: 23 TFADLGVRPETVEALAKAGITHAFAIQEYALPIALRGTDLIGQAPTGTGKTLGFGLPLLE 82
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+V + G G+ +A+IV P+RELG+Q+ R++ G + V + GG
Sbjct: 83 RV------LAPSEGADGRP---QALIVVPTRELGLQVARDLAAA-GSTRGVRVLPIYGGV 132
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q E L+K I+VGTPGR+ +++ +L + LVLDE D +L F + + +
Sbjct: 133 AYEPQVEQLKKGV-EILVGTPGRLLDLAKQKQLKLNAVAALVLDEADRMLDLGFLDDVEK 191
Query: 291 IVEHVGRRSGANPREPKSALAMRAE-RQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I LAM E RQT++ SAT+P ++ +R + +P+ + A +
Sbjct: 192 I------------------LAMLPEQRQTMLFSATMPDPIVALSRRFLRNPMTIHAGHT- 232
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
SGP P K T +K++ + R +
Sbjct: 233 -----------TDSGPN-------------------PLTKQVVYRTHPLNKIEMVSRILQ 262
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A D + F R +L+ RG A +HGDLG+ AR L+ F++G++ VLV
Sbjct: 263 ARDRGLTMIFTRTKRAADKVSEELDFRGFAVAAVHGDLGQGARERALRAFRSGKIDVLVA 322
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
+++ARGLDV+ V+N D P D Y HR GRTGR G G V+ +
Sbjct: 323 TDVAARGLDVSGVTHVLNYDCPEDPETYTHRIGRTGRAGATGVAVTFVD 371
>gi|398963681|ref|ZP_10679765.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398149457|gb|EJM38106.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 461
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 204/428 (47%), Gaps = 65/428 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F L L +L LE G+ T +Q+ ++P ILK D++ Q+ TGSGKT A+ + +
Sbjct: 5 ATAFNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGL 64
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L+ + P + +A+++ P+REL Q+ +E+++L D V L G
Sbjct: 65 LNPINP-------------RYFGCQALVICPTRELADQVAKEVRRLARAEDNIKVLTLCG 111
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q +L ++ I+VGTPGRI + G L G L+LDE D +L F +A+
Sbjct: 112 GVSFGPQIASL-EHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAI 170
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+E + P A RQT++ SAT P + + A + DP V+A+
Sbjct: 171 EDIIE----------KTP-------ARRQTLLFSATYPVGIKQLASKFMRDPQTVKAE-- 211
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ + + Q +Q + P + ++ + + +
Sbjct: 212 ---------------------AFHDDTQIEQRFYEISP-----------EERMSAVTKVL 239
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
H + +AF +Q+++ V L ++G+ A LHGDL + R L F N VLV
Sbjct: 240 HHFRPASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLV 299
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+ D+V+N++L DS + HR GRTGR G +G VS+ E + +
Sbjct: 300 ATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAI 359
Query: 529 QKQLAVPI 536
++ P+
Sbjct: 360 EQLQKAPL 367
>gi|343507476|ref|ZP_08744881.1| ATP-dependent RNA helicase [Vibrio ichthyoenteri ATCC 700023]
gi|342798268|gb|EGU33892.1| ATP-dependent RNA helicase [Vibrio ichthyoenteri ATCC 700023]
Length = 419
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 221/453 (48%), Gaps = 67/453 (14%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
S PFA LGL P L++ + + GFN PTEVQ AIP +L+ HDV+ + TG+GKT A
Sbjct: 2 SQPFA-----NLGLEPTLVDTVNQLGFNTPTEVQLHAIPPVLEGHDVLAGAQTGTGKTAA 56
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ LPI+ ++ S+ ++ D+ A+++ P+REL Q+ + + K V
Sbjct: 57 FGLPIIQRL------SNQTYSRDPQRNDVSALVLVPTRELAQQVFDNLTAYAVNTSLKIV 110
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283
GG + + Q + L + I++ TPGR+ + + + LVLDE D +L
Sbjct: 111 TA-YGGTSMNVQTKNLYQG-CDILIATPGRLLDHMHCKNISLQRTQTLVLDEADRMLDMG 168
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
F + RI +G+ M ++RQT+ SAT + A ++P+ V
Sbjct: 169 FWPDLKRI---LGK--------------MNSDRQTLFFSATFDKKIKDLAYKMLNNPIEV 211
Query: 344 QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT 403
Q +S NS A +Q + P K + K +
Sbjct: 212 QV-----------------------ASQNST--ADTVEQMVHPVDK--------KRKSEL 238
Query: 404 LRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L + + + Q V+ F T+Q D++ K L+ G+KAA ++GD + AR L FK G
Sbjct: 239 LAYLIGSRNWQQVLVF-TKTKQGSDSLAKELKLDGIKAASINGDKSQGARQKALDDFKAG 297
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+VR L+ +++ARGLD+ + + V+N D+P + Y HR GRTGR G++G VS+ E
Sbjct: 298 KVRALIATDVAARGLDINQLEQVINFDMPFKAEDYIHRIGRTGRAGKKGLAVSLMSRDEE 357
Query: 523 FVVKKMQKQL--AVPIQACEFTEGRLVIGKEEE 553
++++ +++ L +P + E E L+ E E
Sbjct: 358 YLLEAIERLLDKKLPQEWLEGYEPSLIEDLEPE 390
>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 465
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 203/434 (46%), Gaps = 65/434 (14%)
Query: 98 KSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTG 157
+S + S P F + L LL+ L+ G PTE+Q AIP L D++ S TG
Sbjct: 11 QSNQFWSTPL---QFTDFSLDTRLLKTLDHMGIEKPTEIQQQAIPVGLSGKDLMASSKTG 67
Query: 158 SGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGP 217
SGKTLA+LLP + ++ + S K D +I+ P+REL Q+ +++ L+
Sbjct: 68 SGKTLAFLLPAMQRIISTRALS---------KRDPRVLILLPTRELANQVYSQLRLLVAN 118
Query: 218 SDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID 277
+ KAV+ ++GG N + Q ++L ++ P VV TPGR+A+ A LH +G L+LDE D
Sbjct: 119 TQYKAVK-ILGGENFNDQAKSLERD-PHFVVATPGRLADHLAQHHLHLNGLELLILDEAD 176
Query: 278 ELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRA-ARSW 336
+L F + + I +A A RQT+M SAT+ + I A
Sbjct: 177 RMLDLGFVDQLKAI----------------NAAADHKRRQTLMFSATLDHNKINEIAAEL 220
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
DP+ V + G GN+ NL Q Y
Sbjct: 221 LKDPMHV------------SIGAGNIE----------NLDITQ----------RIYLSDH 248
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAV-FKLEARGMKAAELHGDLGKLARSTT 455
L HK L + + VI F TRQ D + KL G A L GDL + AR+
Sbjct: 249 LDHKEALLNHILKNEKNKQVIIF-TATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQI 307
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
+ +F G +LVT ++++RGLD+ LV+N D+P + Y HR GRTGR G +G +S
Sbjct: 308 MDQFSRGLQDILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAIS 367
Query: 516 ICEEPEVFVVKKMQ 529
+ + K++Q
Sbjct: 368 LVGPKDWVNFKQVQ 381
>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 611
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 204/420 (48%), Gaps = 64/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL LL L+ G+ PT +QSA+I ++ D++ Q+ TG+GKT A+ LP+L+
Sbjct: 7 TFRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAFALPLLN 66
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
KV D N + +++AP+REL +Q+ V + GG
Sbjct: 67 KV----DMKINAP---------QILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQ 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q AL++ P ++VGTPGR+ + G L + LVLDE DE+L F + +
Sbjct: 114 SMHQQLSALKRG-PQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEW 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++EH +PK + Q + SAT+P + R A AK+
Sbjct: 173 VLEH----------KPKDS-------QLALFSATMPEQIKRVA-----------AKH--- 201
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L+ P++ S + S + DQ +H +K++ L R +
Sbjct: 202 -----------LTNPVNISIAASTTTVESIDQRFVQVSQH--------NKLEALVRVLEV 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + VI F+ + KLEARG ++ LHGD+ + AR + + K G++ +L+
Sbjct: 243 ENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E+ +++ +++
Sbjct: 303 DVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIER 362
>gi|77461469|ref|YP_350976.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
gi|77385472|gb|ABA76985.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
Length = 478
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 202/428 (47%), Gaps = 65/428 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F L L +L L+ G+ T +Q+ ++P ILK D++ Q+ TGSGKT A+ + +
Sbjct: 22 ATAFNTLPLSAAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGL 81
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L+ + P + +A+++ P+REL Q+ +EI++L D V L G
Sbjct: 82 LNPINP-------------RYFGCQALVICPTRELADQVAKEIRRLARAEDNIKVLTLCG 128
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q +L ++ I+VGTPGRI + G L G L+LDE D +L F +A+
Sbjct: 129 GVSFGPQIGSL-EHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAI 187
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+E R RQT++ SAT P + + A + DP V+A+
Sbjct: 188 EDIIEQTPAR-----------------RQTLLFSATYPVGIKQLASKFMRDPQTVKAE-- 228
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ + + Q +Q + P + ++ + + +
Sbjct: 229 ---------------------AFHDDTQIEQRFYEISP-----------EERMSAVTKVL 256
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
H + +AF +Q+++ V L ++G+ A LHGDL + R L F N VLV
Sbjct: 257 HHFRPASTVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLV 316
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+ D+V+N++L DS + HR GRTGR G +G VS+ E + +
Sbjct: 317 ATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAI 376
Query: 529 QKQLAVPI 536
++ P+
Sbjct: 377 EQLQKTPL 384
>gi|392962181|ref|ZP_10327628.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421055965|ref|ZP_15518892.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421068803|ref|ZP_15530040.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421073056|ref|ZP_15534160.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392438381|gb|EIW16204.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392439079|gb|EIW16825.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392445483|gb|EIW22815.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392452939|gb|EIW29844.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
Length = 447
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/441 (30%), Positives = 212/441 (48%), Gaps = 73/441 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
F LG+ + L G PTE+Q+ AIP+I+ DVV QS TG+GKTLA++LPIL
Sbjct: 4 DFTALGIRREIGAILAENGITKPTEIQAQAIPAIMSGKDVVGQSQTGTGKTLAFILPILE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ K ++A+I+ P+REL +QI RE+ KL +D+ +Q L G
Sbjct: 64 KI-------------EISKPIVQALIITPTRELALQITREVAKL---ADQLGIQVLSVYG 107
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ + L K IV+GTPGR+ + G + LVLDE D++L F E +
Sbjct: 108 GQDVDRQIKKL-KGGAQIVIGTPGRLMDHLRRGTIQLENVTKLVLDEADQMLHMGFLEDV 166
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL--LVQAK 346
+V R +N +RQT++ SAT+P + A + PL +Q K
Sbjct: 167 EELV-----RQTSN------------KRQTMLFSATMPSKIRGLADRYMRKPLDIRIQTK 209
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N I L+ + KQ +P + K + KL +D R
Sbjct: 210 N-ITLDEI-----------------------KQIMVEVPESEK----IVKLSSMIDEYRP 241
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ I F + ++ L +G + ELHG+L + R +K+F+ ++++
Sbjct: 242 YL-------AIVFCHTKKRAIAVNMALSQKGYETDELHGELSQPKREQVMKRFREAKIQI 294
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLDV + N D+P D Y HR GRTGR G+ G +++ + E V+
Sbjct: 295 LVATDIAARGLDVEGVTHIFNYDIPHDVDSYIHRIGRTGRAGQAGMAITLIDPHEQPYVR 354
Query: 527 KMQKQLAVPIQACEFTEGRLV 547
+++ + I+ + + ++V
Sbjct: 355 LIEQGIRAAIEKHKVNDQKVV 375
>gi|409045997|gb|EKM55477.1| hypothetical protein PHACADRAFT_184272 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 201/427 (47%), Gaps = 50/427 (11%)
Query: 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAY 164
AP SF LGL LLE L++ F PT++Q+AA+P L+ D++ + TGSGKT A+
Sbjct: 16 APQEKPSFKALGLIDPLLEALQQLSFTSPTDIQTAALPHALEGRDIIGVASTGSGKTAAF 75
Query: 165 LLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224
LPIL K L D + A ++AP+REL QI + L G +
Sbjct: 76 ALPILQK---LWDDPRG----------LFACVIAPTRELAYQITEHFEAL-GSAMGVRCA 121
Query: 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIA-EISAAGKLHTHGCRFLVLDEIDELLSFN 283
+VGG + Q AL K KP +VV TPGR+ + +FLVLDE D LL +
Sbjct: 122 TVVGGIDEMSQAVALAK-KPHVVVATPGRLQYHLENTKGFSLRSLKFLVLDEADRLLDMD 180
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
F + +I++ + + ER T + SAT+ V + R+ +P+ V
Sbjct: 181 FGPILDKILKVIPQ-----------------ERTTYLFSATMTTKVAKLQRASLSNPVRV 223
Query: 344 Q-AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
+ ++ PL + +S S S+ L YY L K
Sbjct: 224 EVSEKYAPLLLIRLLMRLRVSRRYSTVST----------------LLQYYLFIPLVQKDV 267
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L ++L + ++I F + + G A LHG L + AR L KFK+G
Sbjct: 268 NLMYLANSLASNSIIIFTRTVHDCQRLAIMMRTLGFPAVPLHGQLSQSARLGALGKFKSG 327
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+VLV ++++RGLD+ D V+N D+PT S Y HR GRT R GR G ++ + +V
Sbjct: 328 GRKVLVATDVASRGLDIPHVDAVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDV 387
Query: 523 FVVKKMQ 529
+V++++
Sbjct: 388 ELVQRIE 394
>gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain-containing protein [Hydrogenobaculum
sp. Y04AAS1]
gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
Y04AAS1]
Length = 364
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 207/414 (50%), Gaps = 68/414 (16%)
Query: 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184
LE G+ PT +Q AIP L+ +D++ Q+ TG+GKT A+ +PI+ K+
Sbjct: 15 LEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVEKL------------ 62
Query: 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKP 244
+ GK D++A+++ P+REL +Q+ +I +L + + GG + + + L+
Sbjct: 63 QKGK-PDVKALVLTPTRELAIQVKEQIY-MLTKYKRLSSYVFYGGTSVKQNLDILQNKNV 120
Query: 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
I++GTPGRI ++ L+ +LVLDE D++L F E + I+ +
Sbjct: 121 DILIGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFL--------- 171
Query: 305 EPKSALAMRAERQTIMVSATVPFSV-IRAARSWGHDPLLVQAKNVIPLESMPATGPGNLS 363
PK ER T M SATVP + + A R D V+ ++V E P
Sbjct: 172 -PK-------ERTTYMFSATVPSRIELLAKRFLKSDFKFVKVQSV---ELKP-------- 212
Query: 364 GPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNT 423
N++ K S P H +L H +DT H + + ++ F+
Sbjct: 213 ----------NIEEKMIKLSSPGEKIH-----ELMHIIDT-----HPM--EKMLIFVKTK 250
Query: 424 RQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECD 483
+ KD F L +G++A LHGDL + R L FK+G V +L+ +++ARGLD+ +
Sbjct: 251 KDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSILIATDVAARGLDIKDVG 310
Query: 484 LVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-ICEEPE--VFVVKKMQKQLAV 534
+V+N ++P D Y HR GRTGR+G+ G S IC E ++ +KK++ +++V
Sbjct: 311 VVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSKALWRIKKLRSKISV 364
>gi|328948169|ref|YP_004365506.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
gi|328448493|gb|AEB14209.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
2489]
Length = 388
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 215/439 (48%), Gaps = 60/439 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N FLEL + ++ +LE G PTEVQ IP I + +++ QS TG+GKT AYLLP+L
Sbjct: 2 NKFLELKVDESIVSKLEEIGITEPTEVQKKIIPLISEGKNIMFQSETGTGKTFAYLLPLL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ +++ + +I +P+ EL QI +++K+ G L+GG
Sbjct: 62 SRLNSTENRMAR------------FMIASPTYELASQIKVQVQKISGIK----CALLIGG 105
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A SRQ E L K KP IV+G P R+ E+ KL G LVLDE D LLS R++
Sbjct: 106 APISRQIELL-KEKPEIVIGGPARLLELIHLKKLKADGIETLVLDEADRLLSPELRDSTK 164
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++E R PKS Q I SATV S +L +A+N
Sbjct: 165 GLME----------RLPKSV-------QLIGNSATV---------SKYTREILQKARN-- 196
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNL-QAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
G ++ N+ L A + L + H+ ++ + K+DTLR +
Sbjct: 197 --------------GILNDEKENAILFVALPMENVLRKQISHWAIFSERRDKIDTLRSFI 242
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+A + ++ F + + Q+++ KL + + L G K+ R + + +F++G+ ++L+
Sbjct: 243 NAEKPKKLLVFTSKSDQIENIASKLRFKKIDCETLCGKTNKVDRKSAIDRFRSGKTKILI 302
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
T +L++RGLD+ VV +DLP + HRAGRT R G G I + E+ ++
Sbjct: 303 TTDLASRGLDIEGITHVVQMDLPEKEDFFIHRAGRTARAGATGINCVIGDAWEMENYARL 362
Query: 529 QKQLAVPIQACEFTEGRLV 547
+K+L + + +G +V
Sbjct: 363 EKKLKITVFPKMLYKGNVV 381
>gi|398981113|ref|ZP_10689297.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
gi|398133831|gb|EJM23012.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
Length = 461
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 202/428 (47%), Gaps = 65/428 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F L L +L L+ G+ T +Q+ ++P ILK D++ Q+ TGSGKT A+ + +
Sbjct: 5 ATAFNTLPLSAAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGL 64
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L+ + P + +A+++ P+REL Q+ +EI++L D V L G
Sbjct: 65 LNPINP-------------RYFGCQALVICPTRELADQVAKEIRRLARAEDNIKVLTLCG 111
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q +L ++ I+VGTPGRI + G L G L+LDE D +L F +A+
Sbjct: 112 GVSFGPQIGSL-EHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAI 170
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+E R RQT++ SAT P + + A + DP V+A+
Sbjct: 171 EDIIEQTPAR-----------------RQTLLFSATYPVGIKQLASKFMRDPQTVKAE-- 211
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ + + Q +Q + P + ++ + + +
Sbjct: 212 ---------------------AFHDDTQIEQRFYEISP-----------EERMSAVTKVL 239
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
H + +AF +Q+++ V L ++G+ A LHGDL + R L F N VLV
Sbjct: 240 HHFRPASTVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLV 299
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+ D+V+N++L DS + HR GRTGR G +G VS+ E + +
Sbjct: 300 ATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAI 359
Query: 529 QKQLAVPI 536
++ P+
Sbjct: 360 EQLQKTPL 367
>gi|220918247|ref|YP_002493551.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219956101|gb|ACL66485.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 488
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 215/460 (46%), Gaps = 74/460 (16%)
Query: 86 VRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL 145
+R DG KA P + +F +L L L+ LER GF PT +Q+ AIP L
Sbjct: 1 MRGDGRKA----------MVPRLSPTFADLNLSEKTLQALERAGFEHPTPIQAQAIPPAL 50
Query: 146 KNHDVVIQSYTGSGKTLAYLLPILSKVG----PLKDKSSNGNGESGKKTDIEAVIVAPSR 201
DV+ + TG+GKT A+LLPI+ ++G KD+ + +G+ G + A+++AP+R
Sbjct: 51 GGRDVIGAAATGTGKTAAFLLPIIERLGGGAPAPKDRPAAAHGKPGPR----ALVLAPTR 106
Query: 202 ELGMQIVREIKKL-LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA 260
EL +QI E+ + G + A+ ++GG Q ALR ++ ++V TPGR+ +
Sbjct: 107 ELAVQIAGELDRFGRGRHVRGAL--VIGGVGMGAQSAALRDHE--VIVATPGRLVDHLQQ 162
Query: 261 GKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIM 320
G G LVLDE D +L F + RI+ V PK RQT++
Sbjct: 163 GTARLDGLEVLVLDEADRMLDMGFAPQLKRILARV----------PKV-------RQTLL 205
Query: 321 VSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQA 380
SAT+ V AR+ DP+ V+ + S A++A
Sbjct: 206 FSATMAGEVAEFARAHLRDPVRVEV-------------------------ARSGTLAERA 240
Query: 381 DQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKA 440
+Q + + + + K+ L + D T++ F R+ L+ G K
Sbjct: 241 EQRV--------FLPEQREKLPLLMALLEEDDLSTLV-FTRTKRRADKVAKALQRAGHKV 291
Query: 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
A +H D + R L+ F++G+ RVLV +++ARG+DVAE VVN DLP Y HR
Sbjct: 292 ARIHADRSQAQRRMALEGFRDGQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHR 351
Query: 501 AGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE 540
GRT R+ G + E+ +++ +++ PI E
Sbjct: 352 VGRTARMAASGRASAFASPEELDLLRDIERLTRAPIPRAE 391
>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 504
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 202/426 (47%), Gaps = 62/426 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL P +L+ + G+ PT +Q+ AIP +L DV+ + TG+GKT ++ LP++
Sbjct: 2 TFDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMI- 60
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
DK S G + ++I+ P+REL Q+ + G +K ++ L+GG
Sbjct: 61 ------DKLSRGRARARMP---RSLILEPTRELAAQVAENFET-YGKYNKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ QE+ L + +++ TPGR+ + GK+ G + LV+DE D +L F +
Sbjct: 111 SFGDQEKKLDRGVD-VLIATPGRLLDHCNRGKVLLTGVQILVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + + RQT+ SAT+P + R ++ H+P ++
Sbjct: 170 ICKK-----------------LPFTRQTLFFSATMPPEIQRLTDTFLHNPERIEVAR--- 209
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
SS+++N +K T K D L+R +
Sbjct: 210 -----------------ASSTSAN-------------IKQVLLKTTRDGKRDVLQRMIEE 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + I F N R + L G+ A +HGDL + R+ TL F+NG +R+LV +
Sbjct: 240 DNVKNAIIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ + V N D+P+ + Y HR GRTGR G+ GT V++ + + ++K
Sbjct: 300 DVAARGLDIPDVSHVFNYDVPSHAEDYVHRIGRTGRAGKSGTAVTLSTREDGKYLAAIEK 359
Query: 531 QLAVPI 536
+ PI
Sbjct: 360 LIGNPI 365
>gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
piezotolerans WP3]
Length = 447
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 195/407 (47%), Gaps = 60/407 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + L LL+ L+ G + PTE+Q AIP L D++ S TGSGKTLA+LLP + +
Sbjct: 3 FTDFSLDQRLLQTLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAMQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ K S K D AVI+ P+REL Q+ +++ L+ + KA + ++GG N
Sbjct: 63 MISCKALS---------KRDPRAVILLPTRELATQVYSQLRLLVANTQFKATK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +AL ++ P VV TPGR+A+ LH +G L+ DE D +L F E + +I
Sbjct: 113 FNDQAKALARD-PHFVVATPGRLADHLKQHHLHLNGLELLIFDEADRMLDLGFAEQLKQI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ A RQT+M SAT+ H + A ++
Sbjct: 172 ----------------NNAADHKRRQTLMFSATLD-----------HGDVDEIAAELLKT 204
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
A G GNL + K Q + + C L HK L R +
Sbjct: 205 PEHVAIGAGNL-------------EHKDITQRI------FLC-DHLDHKEALLSRILKDE 244
Query: 412 DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ +I F TRQ D + K L G K A L G+L + AR+ + +F G ++LVT
Sbjct: 245 QQKQIIIF-TATRQDTDRLAKKLADDGFKTASLSGELKQSARNQIMDEFSRGLQQILVTT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++++RGLD+ LV+N D+P + Y HR GRTGR G +G VS+
Sbjct: 304 DVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLV 350
>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 599
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 203/420 (48%), Gaps = 64/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL LL L+ G+ PT +Q+A+I ++ D++ Q+ TG+GKT A+ LP+L+
Sbjct: 7 TFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ P ++ + +++AP+REL +Q+ V + GG
Sbjct: 67 AIDPNRNVP-------------QILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQ 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q ALR+ P IVVGTPGR+ + G L LVLDE DE+L F + +
Sbjct: 114 SMHQQLNALRRG-PQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEW 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+EH P+ ERQ + SAT+P + R A + P+ +
Sbjct: 173 ILEHT----------PQ-------ERQLALFSATMPEQIKRVANKYLQTPVHI------- 208
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S ++S++ +++ ++ + +K++ L R +
Sbjct: 209 ----------------SIAASHTTVES----------IEQRFVQVSQHNKLEALVRVLEV 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + +I F+ + KLEARG ++ LHGD+ + AR + + K G++ +L+
Sbjct: 243 ENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV V+N D+P D+ Y HR GRTGR GR G + E+ +++ +++
Sbjct: 303 DVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIER 362
>gi|257456998|ref|ZP_05622179.1| ATP-dependent rRNA helicase RRP3 [Treponema vincentii ATCC 35580]
gi|257445707|gb|EEV20769.1| ATP-dependent rRNA helicase RRP3 [Treponema vincentii ATCC 35580]
Length = 434
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/448 (29%), Positives = 222/448 (49%), Gaps = 62/448 (13%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P FL + L +E L G PT +Q IP L+ V +S TG+GKTLA+L
Sbjct: 35 PCGMTDFLNIPLYEPFVETLAAGGIIHPTPIQEKVIPLALEGKSVFFESETGTGKTLAFL 94
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
LP+ +++ ++D+ K T +I++P+ EL QI +L G +
Sbjct: 95 LPLFTRL--MQDEK--------KTTAPRILILSPTVELASQIKETAAQLQGSGTQYFKTL 144
Query: 226 L-VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
L VGG++ RQ E L K KPA+++GTP RI+++ KL +V+DE D L+
Sbjct: 145 LCVGGSSLKRQIEGL-KEKPAVIIGTPARISDLIGLKKLKLQEITAVVIDEADRQLA--- 200
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
RE + AL QT++ AT+P V A S + ++
Sbjct: 201 -------------------RESRDAL------QTVL--ATLPQDVQALACSATFNGKNIE 233
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
N S A P LS +G NS ++H+ ++ ++K DTL
Sbjct: 234 LLNGFLRRSSAAELPECLSIAHTGVLQNS--------------IEHWALFSERRNKADTL 279
Query: 405 RRCVHALD------AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
R +HALD A+ ++ F ++++ KL+ + + A L+G L R + +
Sbjct: 280 RALIHALDNTSVHSAKKMLIFTAPAQEVETLAQKLQHKKIDAVPLYGKLEGSERKQIIAR 339
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
F++G+ R+L+T++LSARGLD+A+ D +V + L D+ + HRAGRTGR G++G + I +
Sbjct: 340 FRSGKTRILITSDLSARGLDIADIDYIVQMQLSKDADAFIHRAGRTGRAGKKGVNIVIGD 399
Query: 519 EPEVFVVKKMQKQLAVPIQACEFTEGRL 546
E E+ +++ ++K+L + + T G++
Sbjct: 400 EYELRILQALEKKLGITVYPKILTGGKI 427
>gi|386757416|ref|YP_006230632.1| ATP-dependent RNA helicase [Bacillus sp. JS]
gi|384930698|gb|AFI27376.1| ATP-dependent RNA helicase [Bacillus sp. JS]
Length = 376
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 210/446 (47%), Gaps = 77/446 (17%)
Query: 103 ESAPFAAN--SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
++ PF N SF++ E F PT VQ A IL DV+ +S TG+GK
Sbjct: 3 QTWPFLHNAQSFIQ--------ENWNASSFQKPTPVQEQAAQLILDGKDVIAESPTGTGK 54
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
TLAY LP+L ++ P + +AVI+APSREL MQI + I+ S+
Sbjct: 55 TLAYALPVLERIKP-------------DQKHPQAVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+A L+GGAN +Q E L+K+ P I+VGTPGR+ E+ A KL H + +VLDE D+L+
Sbjct: 102 RAA-SLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLV 159
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
RE + +I++ R ERQ + SAT+ R +P
Sbjct: 160 LPEHRETIKQIIKTTLR-----------------ERQLLCFSATLKKETEDVLRELAQEP 202
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+++ Q ++ +KH Y + + K
Sbjct: 203 EVLKV---------------------------------QRSKTEAGKVKHQYLICDQRDK 229
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
V L++ + L+ + F+ + L KL ++ LH + K+ R+ + F+
Sbjct: 230 VKLLQK-LSRLEGMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIAAFE 288
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+GE +L+ +++ARGLD+ V++ D+P D Y HR+GRTGR G+ G V+S+ +
Sbjct: 289 DGEFPLLLATDIAARGLDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKL 347
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRL 546
E +KK K+L V + + G+L
Sbjct: 348 EESKLKKTAKKLGVELSEAVYAGGKL 373
>gi|381204134|ref|ZP_09911205.1| ATP-dependent RNA helicase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 556
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/462 (26%), Positives = 220/462 (47%), Gaps = 74/462 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F E+GL +L L GF+ PT +Q IP ++++DV+ Q+ TG+GKT A+ +P++
Sbjct: 2 TFQEMGLSDAVLRALVESGFSEPTPIQEQVIPLQIRHNDVIGQAQTGTGKTAAFGIPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ P + S K ++A+I+ P+REL Q+ E+++ +G ++ + GG
Sbjct: 62 RLSPRQRHDS--------KHTMDALILTPTRELASQVTDELRR-IGLYKSLSIVTIYGGV 112
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q LR+ I+VGTPGR+ + + G + G R VLDE DE++ F E +
Sbjct: 113 SIEQQIRTLRRGT-NIIVGTPGRVLDHLSRGTIDLSGVRHFVLDEADEMVDMGFIEDIQT 171
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ ++ +RQ ++ SAT+ + R A +
Sbjct: 172 IMQ-----------------SLPEKRQILLFSATMSPEIDRIAAKY-------------- 200
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+S P + S S SN+ L P + + K + + L R +
Sbjct: 201 -----------MSHPSTVSVSKSNI--------LVPRISQWLHKVKSWERFEGLCRILTY 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F R + + +L RG KA LHGD + R ++KF+N E+ +L+
Sbjct: 242 HRPELALIFCQTKRDVDELYRQLHGRGYKAEALHGDYSQHQRDQVMQKFRNHELDLLIAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+L+ARG+D ++ D+VVN ++P + Y HR GRTGR GR G V + + ++K
Sbjct: 302 DLAARGID-SKLDMVVNYNVPENPETYVHRIGRTGRAGREGLAVMFVSPEDYRQLYAIEK 360
Query: 531 QLAVPIQA-------------CEFTEGRLVIGKEEEKTLEAV 559
+ + +Q +F + R+ IG ++ ++ + +
Sbjct: 361 LIKIRLQYRDLPTRKELKTHHQDFLQMRIEIGTKDSESADYI 402
>gi|386774462|ref|ZP_10096840.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 596
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/428 (29%), Positives = 204/428 (47%), Gaps = 59/428 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F + + +++ L +G P +Q+ +P L+ D++ Q+ TG+GKTL + +P+L
Sbjct: 18 QTFADFDVRADIVKALAAKGITTPFPIQALTLPVALRGRDIIGQAKTGTGKTLGFGIPLL 77
Query: 170 -SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV- 227
S V P N + +A++V P+REL +Q+ +++ S K+ ++ L
Sbjct: 78 QSSVAP-----GEPNPDDRPIGKPQALVVLPTRELAVQVAHDLETA---SAKRPIRILTV 129
Query: 228 -GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q EAL K +VVGTPGR+ ++ L R VLDE DE+L F E
Sbjct: 130 YGGRAYEPQIEALEKGV-EVVVGTPGRLIDLMRQKHLDLSQVRTAVLDEADEMLDLGFLE 188
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ ++++ A+ A RQT++ SAT+P ++ AR + P ++A
Sbjct: 189 DIEKLLQ-----------------AVPANRQTMLFSATMPGPIMALARRFMKQPTHIRAH 231
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ G S + KQ Y +L K++ + R
Sbjct: 232 D-------------------PGDESRTKADIKQV----------VYRAHQLD-KIEVMAR 261
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A I FM RQ L RG AA LHGDLG+ AR L+ F+NG++ V
Sbjct: 262 VLQARGRGLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRNGKIDV 321
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+DV + VVN + P D Y HR GRTGR G++GT ++ + ++
Sbjct: 322 LVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAGKKGTAITFVDWEDLARWA 381
Query: 527 KMQKQLAV 534
+ +QL +
Sbjct: 382 LIARQLGL 389
>gi|327554933|gb|AEB00820.1| vasa-like protein [Penaeus monodon]
Length = 707
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 142/512 (27%), Positives = 225/512 (43%), Gaps = 78/512 (15%)
Query: 42 GRHHGPLTLASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLE 101
GR+ G + G+ + P + + + +PI IP+ V D + G++
Sbjct: 188 GRNKGCFKCSQEGHSARDCPNPGGGAEEKRPRAPIYIPED----VNEDDLFVMGIEAGSN 243
Query: 102 IES---------------APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK 146
++ AP A SF + L PLLLE + + G+ PT VQ IP+++
Sbjct: 244 FDAYANIRVNVTGDDPIQAP--AASFQTMNLRPLLLENIAKAGYGCPTPVQKYTIPNVMN 301
Query: 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKS-SNGNGESGKKTDIEAVIVAPSRELGM 205
D++ + TGSGKT A+LLP+L + L + SN E + T +++ P+REL +
Sbjct: 302 GRDIMGCAQTGSGKTAAFLLPMLHHI--LDNNCPSNAFEEPAQPT---GLVICPTRELAI 356
Query: 206 QIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHT 265
QI+RE +K S K GGA Q + + I+V TPGR+ + GK+
Sbjct: 357 QIMREARKFSHSSVAKCCVAY-GGAAGFHQLKTIHSG-CHILVATPGRLLDFVEKGKVVF 414
Query: 266 HGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV 325
++LVLDE D +L F ++ ++ H + +R T+M SAT
Sbjct: 415 SSLKYLVLDEADRMLDMGFLSSIKTVINH-------------KTMTPTTDRITLMFSATF 461
Query: 326 PFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLP 385
P + A ++ ++ L V + GS +N KQ
Sbjct: 462 PNEIQELASAFLNNYLFV----------------------VVGSVGAANTDVKQ------ 493
Query: 386 PALKHYYCVTKLQHKVDTLRRCVHAL---DAQTVIAFMNNTRQLKDAVFKLEARGMKAAE 442
CV K + K + C L + + ++ F+ R L + +A
Sbjct: 494 ----EVLCVPKFEKKAKLVEMCEEILINAEDEKILVFVEQKRVADFVGTYLCEKNFRATT 549
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAG 502
+HGD + R L +F+ G +LV ++ARGLD+ +VVN DLP + Y HR G
Sbjct: 550 MHGDRYQAQREQALTEFRTGVYNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIG 609
Query: 503 RTGRLGRRGTVVSIC-EEPEVFVVKKMQKQLA 533
RTGRLG RG +S EE + + K + K L+
Sbjct: 610 RTGRLGNRGLSISFYDEEADACLTKDLVKVLS 641
>gi|379748729|ref|YP_005339550.1| rhlE [Mycobacterium intracellulare ATCC 13950]
gi|379756031|ref|YP_005344703.1| rhlE [Mycobacterium intracellulare MOTT-02]
gi|379763565|ref|YP_005349962.1| rhlE [Mycobacterium intracellulare MOTT-64]
gi|387877380|ref|YP_006307684.1| rhlE [Mycobacterium sp. MOTT36Y]
gi|406032274|ref|YP_006731166.1| DEAD-box ATP-dependent RNA helicase cshA [Mycobacterium indicus
pranii MTCC 9506]
gi|378801093|gb|AFC45229.1| rhlE [Mycobacterium intracellulare ATCC 13950]
gi|378806247|gb|AFC50382.1| rhlE [Mycobacterium intracellulare MOTT-02]
gi|378811507|gb|AFC55641.1| rhlE [Mycobacterium intracellulare MOTT-64]
gi|386790838|gb|AFJ36957.1| rhlE [Mycobacterium sp. MOTT36Y]
gi|405130821|gb|AFS16076.1| DEAD-box ATP-dependent RNA helicase cshA [Mycobacterium indicus
pranii MTCC 9506]
Length = 509
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/428 (28%), Positives = 199/428 (46%), Gaps = 61/428 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ ++ L +G P +Q +P L D++ Q+ TG GKT A+ +P+L +
Sbjct: 12 FAQLGVRDEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK-AVQQL 226
+ ++G A+IV P+REL +Q+ ++ K L ++ +V +
Sbjct: 72 I-------TSGTAARPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPI 124
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q EALR +VVGTPGR+ ++S G L G LVLDE DE+L F
Sbjct: 125 YGGRPYEAQIEALRAGAD-VVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLP 183
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ + +RQ+++ SAT+P +I AR++ + P ++A+
Sbjct: 184 DIERILRQI-----------------PVDRQSMLFSATMPDPIITLARTFMNQPTHIRAE 226
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
P S ++ ++ +Q Y KV+ + R
Sbjct: 227 -----------------APHSAATHDTTVQ--------------YAYRAHALDKVELVSR 255
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R + +L RG +HGDLG++AR LK F+ G++ V
Sbjct: 256 ILQAEGRGATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDV 315
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 316 LVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDELTRWA 375
Query: 527 KMQKQLAV 534
+ K L +
Sbjct: 376 LIDKALGL 383
>gi|395492457|ref|ZP_10424036.1| putative helicase [Sphingomonas sp. PAMC 26617]
Length = 492
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 209/449 (46%), Gaps = 64/449 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL L + G+ PT +Q++AIPSIL D+V + TG+GKT A++LP++
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMID 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+G G S + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 62 ILG---------EGRSRARMP-RSLILEPTRELAAQVAENFEKY-GKYHKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q AL K +++ TPGR+ ++ GK+ GC LV+DE D +L F +
Sbjct: 111 SMGDQTAALEKGV-DVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + PK+ RQT++ SAT+P + + A + +P ++
Sbjct: 170 ICTKL----------PKT-------RQTLLFSATMPPPIKKLADKFLDNPKTIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT +N N+ K + K DTL + + +
Sbjct: 208 --ARPAT-------------ANVNI-------------KQWLVPVTAAKKRDTLMKLLRS 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D QT I F N +++ L+ G ++E+HGD+ + R L +FK GEV++LV +
Sbjct: 240 EDVQTGIIFSNRKTTVRELNKALQRAGFASSEIHGDMEQSQRIAELDRFKKGEVKILVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ V N D P Y HR GRTGR G G + + ++ ++K
Sbjct: 300 DVAARGIDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGATGIAFTFATPDDAENIQNIEK 359
Query: 531 QLAVPIQACEFTEGRLVIGKEEEKTLEAV 559
+ I+ +T G EE EA
Sbjct: 360 LTGLKIE--RYTTGDPAPIAEEAPVAEAT 386
>gi|404445393|ref|ZP_11010534.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
gi|403652333|gb|EJZ07390.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
Length = 505
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 196/417 (47%), Gaps = 62/417 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LG+ ++ L EG +Q +P L D++ Q+ TG GKT A+ +P+L
Sbjct: 11 TFAQLGVRDEIVRALAEEGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLH 70
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK-AVQQ 225
++ ++ G A+IV P+REL +Q+ ++ K L+ +K V
Sbjct: 71 RITTDTERPLTGIPR--------ALIVVPTRELCIQVYEDLLGASKYLMADDTRKLTVTA 122
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
+ GG Q EAL+K +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 123 IYGGRPYEPQIEALQKGVD-VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFL 181
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ RI++ + A+RQ ++ SAT+P +I AR++ P ++A
Sbjct: 182 PDIERILKQI-----------------PAKRQAMLFSATMPDPIITLARTFMTQPTHIRA 224
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
+ P S ++ +S Q +L KV+ +
Sbjct: 225 E-----------------APHSSATHDSTEQFAYRAHAL--------------DKVEMVA 253
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
R + A + F R + +L RG K +HGDLG+ AR LK F+ GEV
Sbjct: 254 RILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQAAREKALKSFRTGEVD 313
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
VLV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 314 VLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDEL 370
>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
Length = 423
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/433 (28%), Positives = 196/433 (45%), Gaps = 65/433 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF + L P + +E G+ PT +Q +IP+I++ DV+ + TG+GKT A+ LPIL
Sbjct: 2 SFTQFNLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPILQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ NG G+ + A+IVAP+REL QI I ++ + K+V L GG
Sbjct: 62 RL-------MNGPGKM-----VRALIVAPTRELAEQINESINEMSRSTKLKSV-ALYGGV 108
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+++ Q E LR+ I+V PGR+ ++ A G G VLDE D + F + +
Sbjct: 109 SKNPQIEKLRQGA-EIIVACPGRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRK 167
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + + + RQT++ SAT+P + A+ HDPL ++ N IP
Sbjct: 168 ITKQLPEK-----------------RQTLLFSATMPADIRSLAKDILHDPLTIRIGNDIP 210
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ ++ T L P +H K L + +
Sbjct: 211 VSTVSHT--------------------------LYPVEQHL--------KTALLIKLLKE 236
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D ++V+ F + +++ G + L GDL + R T L F+ G+ R+L+
Sbjct: 237 TDTESVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKYRILIAT 296
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N D+P Y HR GRTGR + G S E +V ++
Sbjct: 297 DIAARGIDVTRISHVINYDMPDTVEAYTHRIGRTGRATKSGDAFSFVTSEERDLVDSIEY 356
Query: 531 QLAVPIQACEFTE 543
L I C +
Sbjct: 357 VLGKQIARCTLED 369
>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 582
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 206/434 (47%), Gaps = 59/434 (13%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
+AP +F + + ++E L +G P +QS +P L+ D++ Q+ TG+GKTL
Sbjct: 25 AAPVEERTFADFDVRTDIVEALAAKGITTPFPIQSLTLPVALRGRDIIGQAKTGTGKTLG 84
Query: 164 YLLPIL-SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
+ +P+L + V P N +A++V P+REL +Q+ +++ S K+
Sbjct: 85 FGIPLLQNSVAP-----GEPNPADRPIGTPQALVVLPTRELAVQVAHDLETA---SAKRP 136
Query: 223 VQQLV--GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
++ L GG Q EAL K +VVGTPGR+ ++ L R VLDE DE+L
Sbjct: 137 IRILTVYGGRAYEPQIEALEKGV-EVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEML 195
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
F E + ++++ A+ +RQT++ SAT+P ++ AR + P
Sbjct: 196 DLGFLEDIEKLLQ-----------------AVPVKRQTMLFSATMPGPIMALARRFMKQP 238
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
++A + G S + KQ Y +L K
Sbjct: 239 THIRAHD-------------------PGDESRTKADIKQV----------VYRAHQLD-K 268
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
++ + R + A I FM RQ L RG AA LHGDLG+ AR L+ F+
Sbjct: 269 IEVMARILQARGRGLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFR 328
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+G++ VLV +++ARG+DV + VVN + P D Y HR GRTGR G++GT ++ +
Sbjct: 329 SGKIDVLVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAGKKGTAITFVDWE 388
Query: 521 EVFVVKKMQKQLAV 534
++ + +QL +
Sbjct: 389 DLARWALIARQLGL 402
>gi|449019241|dbj|BAM82643.1| p68 RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 645
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 136/465 (29%), Positives = 212/465 (45%), Gaps = 66/465 (14%)
Query: 94 AGVKKSLEI----ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHD 149
A ++ +EI ++ P SFLE G PP +++ ++R GF PT +Q+ A P LK D
Sbjct: 176 ASFRQRMEITVRGKNVPNPCESFLEAGFPPAIVQCIQRAGFTAPTAIQAQAWPVALKGRD 235
Query: 150 VVIQSYTGSGKTLAYLLPILSKVG---PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206
++ + TGSGKT AYLLP L + PL+ G+G +++AP+REL +Q
Sbjct: 236 LIGIAETGSGKTCAYLLPALVHIHGQPPLR----RGDGPI-------CLVLAPTRELAVQ 284
Query: 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266
I E K G + + + GG +R Q L + I++ TPGR+ + +G+ +
Sbjct: 285 IQTEATKF-GTASRIRNACVYGGVSRGPQARELSRGI-EILIATPGRLIDFLESGRTNLR 342
Query: 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326
+LVLDE D +L F + +IV + R +RQT+M +AT P
Sbjct: 343 RVTYLVLDEADRMLDMGFEPQLRKIVGQI-----------------RPDRQTLMFTATWP 385
Query: 327 FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPP 386
V AR + A + I + + G ++N +Q Q L
Sbjct: 386 RQVQVIARE------FLTAGDWIQIN-------------IGGLDLSANKSIRQVVQVLDE 426
Query: 387 ALKHYYCVTKLQHKVDTLRRCVHALDAQT-VIAFMNNTRQLKDAVFKLEARGMKAAELHG 445
K +LQ + TL D+ V+ F + R+ +L+ G+ A LHG
Sbjct: 427 DEK----PERLQSLLKTLLNASADTDSNAKVLVFTDTKRKADQLSRRLQHWGLAALALHG 482
Query: 446 DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505
D ++ R + F++G+ R+LV +++ARGLD+ VVN D P Y HR GRTG
Sbjct: 483 DKTQMERDRAIGSFRSGQARLLVATDVAARGLDIKNISYVVNYDFPGTIEDYVHRIGRTG 542
Query: 506 RLGRRGTVVSICEEPEVFVVKKM-----QKQLAVPIQACEFTEGR 545
R G GT S + ++ + Q VP + +F R
Sbjct: 543 RAGSTGTAYSFFTPANARLASELVQILEESQNEVPAELNQFVNRR 587
>gi|56963462|ref|YP_175193.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56909705|dbj|BAD64232.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 453
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 203/437 (46%), Gaps = 65/437 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A F LGL LL+ L G PTE+Q IP+IL DV+ QS TG+GKT A+LLPI
Sbjct: 3 AEHFSRLGLNERLLKGLSAIGVKRPTEIQERLIPAILNRKDVIGQSQTGTGKTFAFLLPI 62
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL-V 227
+ ++ D N +++AVI AP+REL Q+ E+KKL+ D + QL V
Sbjct: 63 IEQL----DIEQN---------EVQAVITAPTRELCAQLFDELKKLIVYYDGQVDAQLFV 109
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG +R RQ + L +P IV+GTPGRIA++ L + + LV+DE D++L F E
Sbjct: 110 GGTDRKRQAQRLSTKQPHIVIGTPGRIADLVNTSSLLVYTAKTLVVDEADQMLDMGFLED 169
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ GR + + Q ++ SATVP + + + ++P V +
Sbjct: 170 VDKV---AGR--------------LAEDLQMLVFSATVPEKLQPFLKKYMNNPRHV---H 209
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
V P L A++ L P ++H + K+ L+
Sbjct: 210 VQP----------------------EKLAAERVTHQLVP-VRH-------RDKLTVLKET 239
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ L+ I F N Q + L + LHG L R +K+ ++ ++ L
Sbjct: 240 IRGLNPYLAIIFTNTKEQADEVTAALATEDILVDCLHGGLAPRERKKVMKRVEDLSIQYL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +L+ARG+D+ ++N P D Y HR GRT R G G +S+ E+ + K
Sbjct: 300 VATDLAARGIDIKGVTHIINYAFPQDLDFYVHRVGRTARAGADGIALSLYEQSDEAACAK 359
Query: 528 MQKQLAVPIQACEFTEG 544
+ + + EF +G
Sbjct: 360 LASR-GIVFSFVEFKDG 375
>gi|153953072|ref|YP_001393837.1| ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
gi|219853723|ref|YP_002470845.1| hypothetical protein CKR_0380 [Clostridium kluyveri NBRC 12016]
gi|146345953|gb|EDK32489.1| Predicted ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
gi|219567447|dbj|BAH05431.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 481
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 201/427 (47%), Gaps = 65/427 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + L +LE L++ G+N P+EVQ IP ILKN D++++S TGSGKT A+ +PI
Sbjct: 5 NFKDFQLSNTILESLQKLGYNSPSEVQEKVIPLILKNKDIIVKSQTGSGKTAAFAIPICE 64
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ +++K+ +A+++ P+REL +QI +E +G K + G
Sbjct: 65 KI-EIEEKNP------------QALVLTPTRELALQI-KEDFSYIGRLKKINCTAVFGKE 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
S Q + L K + +V GTPGRI + L ++LV+DE DE+LS F E +
Sbjct: 111 PISLQIKKL-KQRVHVVTGTPGRILDHIERNTLVLEKIKYLVIDEADEMLSRGFMEQVES 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ G+ P+ R T++ SAT+P +++ + +PL ++
Sbjct: 170 VI-------GSLPK----------NRTTLLFSATIPDEILKLCNVYMENPLNIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
Q + S+ + Y + +K L + ++
Sbjct: 208 ----------------------------QCESSVKDRITQMYYKIEAPYKFSLLNKIIYT 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + D V +++AR LHG + + R ++ FK GE L+
Sbjct: 240 ERPDSSMIFCRTKKNVDDLVLQMKARKYSCEALHGGMLQNERIDKIESFKRGEFTFLICT 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV ++N D+P + +Y HR GRTGR GT ++ E +KK+++
Sbjct: 300 DIAARGIDVENITHIINYDIPMERENYIHRIGRTGRFTSNGTAITFVTPKEYLYLKKIEE 359
Query: 531 QLAVPIQ 537
+ I+
Sbjct: 360 YFHITIK 366
>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 505
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 201/430 (46%), Gaps = 61/430 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ ++ L+ +G P +Q +P L D++ Q+ TG GKT A+ +P+L +
Sbjct: 12 FAQLGVRDEIVRALDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK-AVQQL 226
+ + G A++V P+REL +Q+ ++ K L + +V +
Sbjct: 72 I-------TAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPI 124
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q +ALR +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 125 YGGRPYEPQIDALRAGA-DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLP 183
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ + P +RQ+++ SAT+P +I AR++ + P ++A+
Sbjct: 184 DIERILRQI----------PD-------DRQSMLFSATMPDPIITLARTFMNQPTHIRAE 226
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
P S ++ ++ +Q Y KV+ + R
Sbjct: 227 -----------------APHSAATHDTTVQ--------------YVYRAHALDKVELVSR 255
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R + +L RG K +HGDLG++AR LK F+ G++ V
Sbjct: 256 VLQAESRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDV 315
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 316 LVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVDWDELARWA 375
Query: 527 KMQKQLAVPI 536
+ K L + +
Sbjct: 376 LIDKALGLDV 385
>gi|406576053|ref|ZP_11051727.1| DEAD/DEAH box helicase [Janibacter hoylei PVAS-1]
gi|404554534|gb|EKA60062.1| DEAD/DEAH box helicase [Janibacter hoylei PVAS-1]
Length = 526
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 208/452 (46%), Gaps = 64/452 (14%)
Query: 89 DGIKAAGVKKSLEIE-SAPFAA-NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK 146
D + V+ + +IE +AP AA +F + + P ++ L G P +Q+ +P L
Sbjct: 12 DAAEREAVQATPDIEGTAPEAAEQTFGDFDVHPEIVAALADAGIIHPFPIQAMTLPVALG 71
Query: 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206
HD++ Q+ TG+GKTL + +P+L+++ D +A+ VAP+REL Q
Sbjct: 72 GHDIIGQAKTGTGKTLGFGVPMLNRIDLESDDPRP-----------QALAVAPTRELASQ 120
Query: 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266
+ ++++ G V + GG Q EAL++ +VVGTPGR+ +++ G L
Sbjct: 121 VAADLERA-GKRLGIKVLTVYGGRAYEPQIEALKQGV-HVVVGTPGRLIDLAQQGHLDLS 178
Query: 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRA-ERQTIMVSATV 325
+ +VLDE DE+L F + +I +AM A R T++ SAT+
Sbjct: 179 ATKTVVLDEADEMLDLGFLPDVEKI------------------MAMTAPARHTMLFSATM 220
Query: 326 PFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLP 385
P +++ AR + P ++A M G G D
Sbjct: 221 PGAIVALARRYMTQPTHIRA--------MSEDGEG--------------------DSHTV 252
Query: 386 PALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHG 445
A++ + KV+ L R + A D I F R +L RG AA +HG
Sbjct: 253 KAIEQFVYRAHAMDKVEMLSRILQAKDRGLTIIFSRTKRTAAKVADELTERGFAAASIHG 312
Query: 446 DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505
DLG+ AR L+ F+NG+V VLV +++ARG+DV VVN P D Y HR GRTG
Sbjct: 313 DLGQGAREQALRAFRNGKVDVLVATDVAARGIDVTNVTHVVNYQCPDDEKTYVHRIGRTG 372
Query: 506 RLGRRGTVVSIC--EEPEVFVVKKMQKQLAVP 535
R G G V+ ++ + V Q L +P
Sbjct: 373 RAGNTGVAVTFVDWDDETKWAVINRQLDLGIP 404
>gi|339495942|ref|YP_004716235.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338803314|gb|AEJ07146.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 512
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 207/423 (48%), Gaps = 68/423 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F L L +L LE G+ T +Q+ ++P +LK HD++ Q+ TGSGKT A+ + +L
Sbjct: 57 AFSTLPLSAAMLANLEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLD 116
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ P + +A+++ P+REL Q+ +E+++L +D + L GG
Sbjct: 117 PLNP-------------RYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGV 163
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q +L ++ ++VGTPGR+ E G L G LVLDE D +L F +A+
Sbjct: 164 SIGPQIASL-EHGAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAE 222
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ G P A+RQT++ SAT P S+ + A S+ P V+ +++
Sbjct: 223 II-------GQTP----------AKRQTLLFSATYPASIEQLAASFMRAPQQVRVESL-- 263
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+++ Q +Q + P + ++D + R + +
Sbjct: 264 ---------------------HTDSQIEQRFYEIDP-----------EQRLDAVARLLAS 291
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ +AF +Q ++ V L A+G+ AA L+GDL + R L F N + VLV
Sbjct: 292 FRPESCVAFCFTKQQCQELVEYLNAKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVAT 351
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF---VVKK 527
+++ARGLD+ D+V+N++L D + HR GRTGR G +G S+ E ++K
Sbjct: 352 DVAARGLDIDALDMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIEK 411
Query: 528 MQK 530
+QK
Sbjct: 412 LQK 414
>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 489
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 204/425 (48%), Gaps = 64/425 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL LL ++ +G++ P+ +Q AIP++L DV+ + TG+GKT + LP+L
Sbjct: 2 SFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLLH 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ S GN + + A+++ P+REL Q+ + K+V + GG
Sbjct: 62 RL-------SRGN--PARSNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVV-VFGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + Q A+RK ++V TPGR+ ++ + LH L+LDE D +L F + +
Sbjct: 112 NINPQMLAMRKGA-DVLVATPGRLLDLVSQNALHFRQLEVLILDEADRMLDMGFIRDIRK 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + PK +RQT+M SAT + A+ ++P+ + +V P
Sbjct: 171 IINML----------PK-------DRQTLMFSATFSDEIRTLAKGLLNEPVQI---DVAP 210
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ T +K C K L +
Sbjct: 211 RNTTAET------------------------------IKQTICPVDKGRKPALLCHLIKH 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ Q V+ FM V +LE G++AA +HG+ + AR+ L FK+G VRVLV
Sbjct: 241 NNWQQVLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKK 527
+++ARG+D+A+ VVN +LP + Y HR GRTGR G G ++VS E+P + V+K
Sbjct: 301 DIAARGIDIAQLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLVSADEQPLLVDVEK 360
Query: 528 MQKQL 532
+ KQ+
Sbjct: 361 LIKQI 365
>gi|373488719|ref|ZP_09579383.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372005664|gb|EHP06300.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 515
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 137/453 (30%), Positives = 214/453 (47%), Gaps = 76/453 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LG +L LER GF+ PT VQ+ L+ D+++QS TGSGKTLA+ LP+L
Sbjct: 5 TFAALGCSEPILAALERRGFHTPTPVQAECYQPGLEGRDLLVQSRTGSGKTLAFGLPLLH 64
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ P D+ + +A+I+ P+REL Q+ E+ ++ D + +LVGG
Sbjct: 65 RLHP--DRFA------------QALILTPTRELAQQVAAELSSVVPQLD---LAELVGGM 107
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q +AL K ++VGTPGR + G L +VLDE DE+L+ F E + +
Sbjct: 108 SYGPQLKAL-KYGARVIVGTPGRTMDHLEQGSLDLSQATMVVLDECDEMLNMGFLEDVEK 166
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ +G R QT + SAT+P + A+ + +P Q
Sbjct: 167 ILSRLGNRP-----------------QTYLFSATLPGPIAALAQRFLKNPHRAQ------ 203
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L PAT +++ H C+ ++ L +
Sbjct: 204 LNDGPATSHADIT--------------------------HTPCLVAEPYQSRALVNILLQ 237
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + F Q ++ L G+ A LHGDL + AR+ L FK G++ +LV
Sbjct: 238 DDPSAALVFTKTKAQTEEVAQMLREAGLSADHLHGDLAQAARNRILNNFKTGKLHILVAT 297
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV----K 526
+++ARGLD+ LVV+L +PT Y HR+GRTGR G +GT +++ + E ++ +
Sbjct: 298 DVAARGLDIEGLPLVVHLGIPTQVESYVHRSGRTGRAGAKGTSLALVGQKESRILMAWGR 357
Query: 527 KMQKQLA---VPIQA--CEFTEGRLVIGKEEEK 554
++ QLA VP Q E E RL + +E K
Sbjct: 358 RVGLQLAWRPVPTQEEIREAKETRLALRLKEIK 390
>gi|90020267|ref|YP_526094.1| ATP-dependent RNA helicase RhlB [Saccharophagus degradans 2-40]
gi|89949867|gb|ABD79882.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
Length = 392
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 124/432 (28%), Positives = 206/432 (47%), Gaps = 60/432 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF EL L PL++ L F + +Q+ ++P L+ HDV+ ++ TG+GKT A+L+ ++
Sbjct: 7 SFEELNLSPLVMRALSDLKFTECSAIQAKSLPFTLRGHDVLGKAQTGTGKTAAFLIALIE 66
Query: 171 KV--GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ P++++ G S +++AP+REL MQI ++ + L+ +D K V LVG
Sbjct: 67 DLLGTPIEEERYAGEARS--------LVIAPTRELAMQIAKDAENLVKHTDLK-VHILVG 117
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + ++Q + L+ I+V TPGR+ + ++ LV+DE D +L F +
Sbjct: 118 GVDYAKQLQKLQAEHIDILVATPGRLLDFCEKRAVYLDQVEVLVIDEADRMLDMGFIPQV 177
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RIV P S RQT++ SAT V+R + W H+P+ V
Sbjct: 178 KRIVRMT----------PPST-----HRQTLLFSATFSEDVLRLSEQWMHEPVTV----- 217
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S + N+ A + Q + Y V+ + K L +
Sbjct: 218 --------------------SIEDENVAADRVKQVV-------YLVSS-EEKFTVLGNLM 249
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D + ++ F N Q +D KL+ RG + L G++ + R TL+ F+ G++ LV
Sbjct: 250 REPDVENIMIFANRRDQCRDLHHKLQRRGFRVGLLSGEIAQNKRIRTLEDFRTGKLTALV 309
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ RG+ + VVN LP + Y HR GRTGR G+ G VS+ E + ++ +
Sbjct: 310 ATDVAGRGIHIDGISHVVNYTLPEEPEDYVHRIGRTGRAGKEGVSVSLACEDDALRLEPI 369
Query: 529 QKQLAVPIQACE 540
Q+ L I CE
Sbjct: 370 QELLGRKI-PCE 380
>gi|359451692|ref|ZP_09241090.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20480]
gi|358042514|dbj|GAA77339.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20480]
Length = 440
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 125/406 (30%), Positives = 192/406 (47%), Gaps = 58/406 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ + KAV+ ++GG N
Sbjct: 63 V--IKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVK-VLGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ + L G L+ DE D +L F E + I
Sbjct: 113 FNDQIKALR-NDPQFVVATPGRLADHISKRSLQLSGLELLIFDEADRILDLGFTEQLKLI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT++ SAT+ + + A ++N+
Sbjct: 172 NDEANHRL----------------RQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P + S +N Q Q+L Y L HK L +
Sbjct: 202 ----------LKKPKQITLSAANEQHSDITQTL-------YLADHLDHKEALLAHFLKQD 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ I F +L +G K+ L GDL + R + F ++L+T +
Sbjct: 245 EVGQCIIFTATRADTSRLSEELNNKGFKSVALAGDLTQSKRLDIMDSFSRENFKILITTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++RGLD+ V+N DLP + Y HR GRTGR G +GT +S+
Sbjct: 305 VASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGTAISLV 350
>gi|429463016|ref|YP_007184479.1| DEAD/DEAH box helicase family protein [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811795|ref|YP_007448250.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338530|gb|AFZ82953.1| DEAD/DEAH box helicase family protein [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776953|gb|AGF47952.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 467
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 201/447 (44%), Gaps = 66/447 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L ++ GF PT VQ A IP + D+V+ + TGSGKT A++LPIL
Sbjct: 2 SFENLGLNANILNAIKATGFESPTPVQQATIPKAILKQDLVVSAQTGSGKTAAFMLPILQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K + T I+ +++ P+REL MQI + V +VGG
Sbjct: 62 HLSEKK----------AQNTSIQVLVLTPTRELAMQITKAASVYGSNLHWLRVATIVGGM 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL K + I+V TPGR+ + +G++ LVLDE D +L F + +
Sbjct: 112 PYKAQIKALSK-RIDILVATPGRLIDQMQSGRVDLKNVHTLVLDEADRMLDMGFIDDIQT 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IV + PK E+QT++ SAT+ S++ A+ ++P + N
Sbjct: 171 IVAEL----------PK-------EKQTMLFSATIDNSIMNLAKQMMNNPERISLNN--- 210
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S++N++ K V +HK+ L+ +
Sbjct: 211 -----------------NKQSHNNIEQK------------LIYVDDYKHKIKILQHLLGN 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ I F + R D L G A LHGD+ + R+ TL + + ++++L+
Sbjct: 242 ENLDQAIVFTSTKRGADDLSNHLSDNGFAVAALHGDMNQRQRTRTLSQLQKKQLQILIAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ +N DLP + Y HR GRTGR GR G +++ E V++++
Sbjct: 302 DVAARGIDIQGISHAINFDLPMQAEDYVHRIGRTGRAGRNGEALTLASHSEKHKVRRIEN 361
Query: 531 QLAVPIQACEFTEGRLVIGKEEEKTLE 557
+ I ++IG E T +
Sbjct: 362 YIGKNINI------EVIIGLESTNTFK 382
>gi|386022603|ref|YP_005940628.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 4166]
gi|327482576|gb|AEA85886.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 4166]
Length = 460
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 207/423 (48%), Gaps = 68/423 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F L L +L LE G+ T +Q+ ++P +LK HD++ Q+ TGSGKT A+ + +L
Sbjct: 5 AFSTLPLSAAMLANLEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLD 64
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ P + +A+++ P+REL Q+ +E+++L +D + L GG
Sbjct: 65 PLNP-------------RYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q +L ++ ++VGTPGR+ E G L G LVLDE D +L F +A+
Sbjct: 112 SIGPQIASL-EHGAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAE 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ G P A+RQT++ SAT P S+ + A S+ P V+ +++
Sbjct: 171 II-------GQTP----------AKRQTLLFSATYPASIEQLAASFMRAPQQVRVESL-- 211
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+++ Q +Q + P + ++D + R + +
Sbjct: 212 ---------------------HTDSQIEQRFYEIDP-----------EQRLDAVARLLAS 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ +AF +Q ++ V L A+G+ AA L+GDL + R L F N + VLV
Sbjct: 240 FRPESCVAFCFTKQQCQELVEYLNAKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVAT 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF---VVKK 527
+++ARGLD+ D+V+N++L D + HR GRTGR G +G S+ E ++K
Sbjct: 300 DVAARGLDIDALDMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIEK 359
Query: 528 MQK 530
+QK
Sbjct: 360 LQK 362
>gi|392539060|ref|ZP_10286197.1| DEAD/DEAH box helicase [Pseudoalteromonas marina mano4]
Length = 440
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/406 (30%), Positives = 191/406 (47%), Gaps = 58/406 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ + KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVK-VLGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F E + I
Sbjct: 113 FNDQIKALR-NDPQFVVATPGRLADHVTKRSLQLSGLELLIFDEADRILDLGFTEQLKLI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ R RQT++ SAT+ + + A ++N+
Sbjct: 172 NDEANHRL----------------RQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P + S +N Q Q+L Y L HK L +
Sbjct: 202 ----------LKKPKQITLSAANEQHSDITQTL-------YLADHLDHKEALLAHFLKQD 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ I F +L +G K+ L GDL + R + F ++L+T +
Sbjct: 245 EVGQCIIFTATRADTSRLSEELNNKGFKSVALAGDLTQSKRLDIMDSFSRENFKILITTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++RGLD+ V+N DLP + Y HR GRTGR G +GT +S+
Sbjct: 305 VASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGTAISLV 350
>gi|417748952|ref|ZP_12397364.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336459520|gb|EGO38457.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 505
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 201/430 (46%), Gaps = 61/430 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ ++ L+ +G P +Q +P L D++ Q+ TG GKT A+ +P+L +
Sbjct: 12 FAQLGVRDEIVRALDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK-AVQQL 226
+ + G A++V P+REL +Q+ ++ K L + +V +
Sbjct: 72 I-------TAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPI 124
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q +ALR +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 125 YGGRPYEPQIDALRAGA-DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLP 183
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ + P +RQ+++ SAT+P +I AR++ + P ++A+
Sbjct: 184 DIERILRQI----------PD-------DRQSMLFSATMPDPIITLARTFMNQPTHIRAE 226
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
P S ++ ++ +Q Y KV+ + R
Sbjct: 227 -----------------APHSAATHDTTVQ--------------YVYRAHALDKVELVSR 255
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R + +L RG K +HGDLG++AR LK F+ G++ V
Sbjct: 256 VLQAESRGATMLFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDV 315
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 316 LVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVDWDELARWA 375
Query: 527 KMQKQLAVPI 536
+ K L + +
Sbjct: 376 LIDKALGLDV 385
>gi|398306616|ref|ZP_10510202.1| ATP-dependent RNA helicase [Bacillus vallismortis DV1-F-3]
Length = 376
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 132/448 (29%), Positives = 211/448 (47%), Gaps = 77/448 (17%)
Query: 103 ESAPFAAN--SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
++ PF N SF++ E GF PT VQ A I+ DV+ +S TG+GK
Sbjct: 3 QTWPFLHNAQSFIQ--------ENWNASGFQKPTPVQEQAAQLIMDGRDVIAESPTGTGK 54
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
TLAY LP++ ++ P + + VI+APSREL MQI + I+ S+
Sbjct: 55 TLAYALPVMERIKP-------------DQKHPQTVILAPSRELVMQIFQVIQDWKAGSEL 101
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+A L+GGAN +Q E L+K+ P I+VGTPGR+ E+ A KL H + +VLDE D+L+
Sbjct: 102 RAA-SLIGGANVKKQIEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLV 159
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
RE + +I++ R +RQ + SAT+ R +P
Sbjct: 160 LPEHRETIKQIMKTTLR-----------------DRQLLCFSATLKKETEDVLRELAQEP 202
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+++ Q ++ +KH Y + + + K
Sbjct: 203 EVLKV---------------------------------QRSKAEAGKVKHQYLICEQRDK 229
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
V L++ + L + F+ + L KL + LH + K+ R+ + F+
Sbjct: 230 VKLLQK-LSRLQGMQALVFVRDIGNLSVYAEKLAYHHVDLGVLHSEAKKMERAKIIAAFE 288
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+GE +L+ +++ARGLD+ V++ D+P D Y HR+GRTGR G+ G V+S+ +
Sbjct: 289 SGEFPLLLATDIAARGLDIENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKL 347
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRLVI 548
E +KKM K+L V + + G+L I
Sbjct: 348 EESKLKKMAKKLGVELSEAVYAGGKLKI 375
>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
Length = 452
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/428 (28%), Positives = 199/428 (46%), Gaps = 61/428 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ ++ L +G P +Q +P L D++ Q+ TG GKT A+ +P+L +
Sbjct: 12 FAQLGVRDEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK-AVQQL 226
+ ++G A+IV P+REL +Q+ ++ K L ++ +V +
Sbjct: 72 I-------TSGTAARPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPI 124
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q EALR +VVGTPGR+ ++S G L G LVLDE DE+L F
Sbjct: 125 YGGRPYEAQIEALRAGAD-VVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLP 183
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ + +RQ+++ SAT+P +I AR++ + P ++A+
Sbjct: 184 DIERILRQI-----------------PVDRQSMLFSATMPDPIITLARTFMNQPTHIRAE 226
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
P S ++ ++ +Q Y KV+ + R
Sbjct: 227 -----------------APHSAATHDTTVQ--------------YAYRAHALDKVELVSR 255
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R + +L RG +HGDLG++AR LK F+ G++ V
Sbjct: 256 ILQAEGRGATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDV 315
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 316 LVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDELTRWA 375
Query: 527 KMQKQLAV 534
+ K L +
Sbjct: 376 LIDKALGL 383
>gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421]
gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421]
Length = 437
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 191/409 (46%), Gaps = 65/409 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F LGL +++ L+ GF PT +Q +IP +L D++ Q+ TG+GKT A+ LP+
Sbjct: 2 ATAFSALGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ + P + ++A+++AP+REL +Q+ I S + V + G
Sbjct: 62 VDRSDP-------------QDARVQALVLAPTRELAVQVCEAIHTYSKHSGVR-VLPIYG 107
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G RQ LR IVVGTPGR+ ++ G L R LVLDE D++L F E +
Sbjct: 108 GQPIDRQMRRLRAGA-QIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEV 166
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I++ A P ERQ + SAT+P S+ + A P+ +
Sbjct: 167 QTILD------AAPP-----------ERQLVFFSATLPASIRKLAARHLRTPMTL----- 204
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+MP A++ PA+ +++ L R +
Sbjct: 205 ----TMP------------------------AEERDTPAIAQRVYFVNFKNRAQALTRVL 236
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A D + + F + + +L+ G +A LHGDL + AR L +F+ ++ V+V
Sbjct: 237 AAEDPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVV 296
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARGLD+A+ V+N D+P D Y HR GRTGR GR G +S
Sbjct: 297 ATDVAARGLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFA 345
>gi|404252844|ref|ZP_10956812.1| putative helicase [Sphingomonas sp. PAMC 26621]
Length = 492
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 205/434 (47%), Gaps = 64/434 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL L + G+ PT +Q++AIPSIL D+V + TG+GKT A++LP++
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMID 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+G G S + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 62 ILG---------EGRSRARMP-RSLILEPTRELAAQVAENFEKY-GKYHKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q AL K +++ TPGR+ ++ GK+ GC LV+DE D +L F +
Sbjct: 111 SMGDQTAALEKGV-DVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + PK+ RQT++ SAT+P + + A + +P ++
Sbjct: 170 ICTKL----------PKT-------RQTLLFSATMPPPIKKLADKFLDNPKTIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT +N N+ K + K DTL + + +
Sbjct: 208 --ARPAT-------------ANVNI-------------KQWLVPVTAAKKRDTLMKLLRS 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D QT I F N +++ L+ G ++E+HGD+ + R L +FK GEV++LV +
Sbjct: 240 EDVQTGIIFSNRKTTVRELNKALQRAGFASSEIHGDMEQSQRIAELDRFKKGEVKILVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ V N D P Y HR GRTGR G G + + ++ ++K
Sbjct: 300 DVAARGIDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGATGIAFTFATPDDAENIQNIEK 359
Query: 531 QLAVPIQACEFTEG 544
+ I+ +T G
Sbjct: 360 LTGLKIE--RYTTG 371
>gi|444375384|ref|ZP_21174677.1| ATP-dependent RNA helicase [Helicobacter pylori A45]
gi|443620082|gb|ELT80535.1| ATP-dependent RNA helicase [Helicobacter pylori A45]
Length = 492
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/441 (26%), Positives = 213/441 (48%), Gaps = 66/441 (14%)
Query: 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
EI+ + SF +LGL +L+ + GF P+ +Q AIP++L+ DV+ Q+ TG+GK
Sbjct: 11 EIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGK 70
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
T A+ LPI++ LK+ + IEA+++ P+REL MQI EI KL G +
Sbjct: 71 TAAFALPIINN---LKNNHT-----------IEALVITPTRELAMQISDEIFKL-GKHTR 115
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+ GG + +Q E ++KN P +++ TPGR+ + ++H + +VLDE DE+L
Sbjct: 116 TKTVCVYGGQSVKKQCEFIKKN-PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEML 174
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
F + + I ++ + +E Q ++ SAT+P + R A +P
Sbjct: 175 DMGFLDDIEEIFDY-----------------LPSEAQILLFSATMPDPIKRLADKILENP 217
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+ + P N++ N+++ + +Y + + +
Sbjct: 218 IKIH------------IAPSNIT--------NTDITQR------------FYVINE-HER 244
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
+ + R + + I F ++ + L ++ K+ LHGD+ + R ++ FK
Sbjct: 245 AEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFK 304
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+ VLV ++++RGLD++ V N LP ++ Y HR GRTGR G++G +++
Sbjct: 305 KNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPL 364
Query: 521 EVFVVKKMQKQLAVPIQACEF 541
E + +MQK++ I+ E
Sbjct: 365 EYKELLRMQKEIDSKIELFEI 385
>gi|395784104|ref|ZP_10463943.1| hypothetical protein ME3_00599 [Bartonella melophagi K-2C]
gi|395423859|gb|EJF90047.1| hypothetical protein ME3_00599 [Bartonella melophagi K-2C]
Length = 454
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 198/410 (48%), Gaps = 60/410 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N+F++LG+P LL E L G N P +Q AIP +LK D++ + TGSGKTLA+ LP+L
Sbjct: 6 NAFIKLGIPTLLTENLFIAGINKPKPIQKQAIPVMLKKRDILGIAQTGSGKTLAFGLPVL 65
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ L DK A+I+ P+REL +QI I +++ + ++GG
Sbjct: 66 SQILALGDKRYPKTA--------RALILVPTRELAVQIEESI-RMVAKGSHLSTCLILGG 116
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+RS Q + + K +++ TPGR+ ++ + RFLVLDE D +L F +
Sbjct: 117 VSRSAQIKRM-KTGVDVLIATPGRLMDLVCEKCIDLSQSRFLVLDEADRMLDMGFIRDVQ 175
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI A + +RQT + SAT+P ++ A+S ++P+ ++ ++
Sbjct: 176 RI-----------------AKLLHEKRQTALFSATMPQEIVMLAKSLLNEPVKIE---IV 215
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P + AT + S S L D PAL T+ +H D +
Sbjct: 216 P-QGTVATEITQKLYCVPTSEKKSVLNKLLTD----PALASVIIFTRTKHGADAV----- 265
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
R L A + + A +HG+ AR LK F+ G VR+LV
Sbjct: 266 -------------ARSLTKAEYSV-------AAIHGNKSHAARQRALKAFREGSVRILVA 305
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+++ARG+DV V+N DLP ++ +Y HR GRTGR G G +++ +E
Sbjct: 306 TDIAARGIDVPGVSHVINYDLPDEAENYVHRIGRTGRNGTSGNAITLFDE 355
>gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase [Sphingopyxis alaskensis RB2256]
gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
RB2256]
Length = 458
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 198/419 (47%), Gaps = 62/419 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL ++ G++ PT +Q+ AIPS+L D++ + TG+GKT +++LP++
Sbjct: 3 FADLGLSDELLRAIDESGYSEPTAIQAGAIPSVLMMRDMIGIAQTGTGKTASFVLPMI-- 60
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
D ++G + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 61 -----DILAHGRARALMP---RSLILEPTRELAAQVAENFEK-YGKYHKLSMALLIGGVQ 111
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q +AL K +++ TPGR+ ++ GK+ GC LV+DE D +L F + I
Sbjct: 112 MGDQIKALEKGVD-VLIATPGRLMDLFERGKILLTGCNLLVIDEADRMLDMGFIPDIENI 170
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ A RQT++ SAT+P + + A + +P ++
Sbjct: 171 CTK-----------------LPANRQTLLFSATMPPPIKKLADKFLSNPKTIEV------ 207
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ PA S N N++ + T + K DTLR + A
Sbjct: 208 -ARPA-------------SRNENIE-------------QFVVKTSERGKRDTLRGLIEAE 240
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D T I F N +++ L+ G +A E+HGD+ + +R L +FK G + +LV ++
Sbjct: 241 DLSTAIVFCNRKTTVRELAKSLQRSGYRAGEIHGDMDQSSRIAELDRFKAGTINILVASD 300
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARGLDV V N D P Y HR GRTGR G +G ++ + + +QK
Sbjct: 301 VAARGLDVKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAQGRAFTLVTPSDDEAIDNIQK 359
>gi|225444645|ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like [Vitis
vinifera]
Length = 600
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 222/455 (48%), Gaps = 36/455 (7%)
Query: 103 ESAPFAANSFLELGLPPLLLERL-EREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKT 161
ES FA+ SF LGL P L ++L ER GF VPT VQ+ AIP IL V++ + TG+GKT
Sbjct: 23 ESEIFASCSFSSLGLHPTLCDQLRERMGFEVPTIVQAEAIPVILAGRHVLVNAATGTGKT 82
Query: 162 LAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKK 221
+AYL P+++ + + G A+++ P+REL MQ+ ++KLL
Sbjct: 83 IAYLAPVINHLHKYDPRIERSAGTF-------ALVLVPTRELCMQVYEILQKLLHRFHWI 135
Query: 222 AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE--ISAAGKLHTHGCRFLVLDEIDEL 279
++GG NRS+++ LRK +I+V TPGR+ + + + LHT R+++ DE D +
Sbjct: 136 VPGYVMGGENRSKEKARLRKG-ISILVATPGRLLDHLKNTSSFLHT-NLRWIIFDEADRI 193
Query: 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
L F + + I++ +G R+ P + A+ +RQ +++SAT+ V A+ +
Sbjct: 194 LELGFGKEIEEILDLLGSRTNG-PTIREDAVTSEFQRQNLLLSATLNEKVNHLAQISLEN 252
Query: 340 PLLV--QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYY----C 393
P+ + K + P + G + + D LP L Y C
Sbjct: 253 PVTIGLDGKKMQPKPPLEHFGSVEFDVDEDSEKLHKIISPSNGDYKLPAQLVQRYVKVPC 312
Query: 394 VTKLQHKVDTLRRCVHALDAQTVIAFMN--NTRQLKDAVF-----------KLEARGM-- 438
++L + L+ +Q ++ F + + ++F + E R M
Sbjct: 313 GSRLVVLLSILKHLFEREASQKIVVFFSTCDAVDFHYSLFSAFLWPANLHPETEDRQMFL 372
Query: 439 --KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
K +LHG++ R TT + FK + +L++ +++ARGLD + ++ D P ++
Sbjct: 373 RFKTFQLHGNMKHEDRRTTFQTFKKEKSALLLSTDVAARGLDFPKVRCIIQYDSPGEASE 432
Query: 497 YAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
Y HR GRT RLG RG + + E+ ++ ++K
Sbjct: 433 YVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 467
>gi|393719361|ref|ZP_10339288.1| putative helicase [Sphingomonas echinoides ATCC 14820]
Length = 486
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 201/430 (46%), Gaps = 62/430 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL L + G+ PT +Q++AIPS+L D+V + TG+GKT A++LP++
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSVLMGKDLVAIAQTGTGKTAAFVLPMID 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+G G S + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 62 ILG---------EGRSRARMP-RSLILEPTRELAAQVAENFEKY-GKYHKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q AL K +++ TPGR+ ++ GK+ GC LV+DE D +L F +
Sbjct: 111 SMGDQTAALEKGV-DVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + PK+ RQT++ SAT+P + + A + +P ++
Sbjct: 170 ICTKL----------PKT-------RQTLLFSATMPPPIKKLADKFLDNPKTIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT +N N+ K + K DTL + +
Sbjct: 208 --ARPAT-------------ANVNI-------------KQWLVNVSAAKKRDTLISLLRS 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D QT I F N ++D L+ G + E+HGD+ + R L +FK GE+++LV +
Sbjct: 240 EDVQTGIIFSNRKTTVRDLNKALQRAGFASGEIHGDMEQAQRIAELDRFKKGEIKILVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ V N D P Y HR GRTGR G G + + ++ ++K
Sbjct: 300 DVAARGIDIKGVSHVFNYDAPWHPDDYVHRIGRTGRAGATGIAFTFATPDDAENIQNIEK 359
Query: 531 QLAVPIQACE 540
+ I+ E
Sbjct: 360 LTGLKIERYE 369
>gi|84385387|ref|ZP_00988419.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
12B01]
gi|84379984|gb|EAP96835.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
12B01]
Length = 443
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 192/411 (46%), Gaps = 68/411 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F TE+QS AIP + D++ S TGSGKTLA++LP++ K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK K+ + G VI+AP+REL Q+ E++ +LG +A ++GG N
Sbjct: 63 A--LKTKAFSAKDPRG-------VILAPTRELAKQVYGELRSMLGGLSYEAT-LILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALRK P +V TPGR+A+ L G L+LDE D +L F + RI
Sbjct: 113 FNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT L
Sbjct: 172 ANAAKHR----------------RRQTLMFSAT--------------------------L 189
Query: 352 ESMPATGPGN--LSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ G N L P S SN +Q L K Y C L HK L R +
Sbjct: 190 DHAEVNGIANEMLDAPKRISVGVSN------EQHLDITQKFYLC-DHLDHKEAILDRVIE 242
Query: 410 ALDAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ + V+ F +T +L D KL + +KA L G+L + R+ + +F+ ++
Sbjct: 243 EAEYRQVMIFTATRADTDRLTD---KLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKI 299
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
LVT ++++RG+D+ V+N D+P + Y HR GRTGR G +G +S+
Sbjct: 300 LVTTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350
>gi|410866553|ref|YP_006981164.1| DEAD/DEAH box helicase [Propionibacterium acidipropionici ATCC
4875]
gi|410823194|gb|AFV89809.1| DEAD/DEAH box helicase [Propionibacterium acidipropionici ATCC
4875]
Length = 610
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 212/436 (48%), Gaps = 66/436 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +F +LG+ + + L G P +QS IP ++ +D++ Q+ TG+GKTLA+ +
Sbjct: 18 APETFADLGVRDDICQALAGVGIISPFPIQSMCIPIAVEGNDLIGQARTGTGKTLAFGVT 77
Query: 168 ILSK-VGPLKDKSSNGNGESGKKTDI----EAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
IL + V P G+ G D +A++ P+REL +Q+ R+I +
Sbjct: 78 ILQRIVLP---------GDDGWDDDAPRRPQALVTCPTRELALQVSRDIATAATVRGAR- 127
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
V + GG Q EAL +N +VVGTPGR+ +++ L G R VLDE DE+L
Sbjct: 128 VLTVYGGVGYEPQIEAL-ENGVDVVVGTPGRLLDLAHRKDLDLSGARITVLDEADEMLDL 186
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +++ PK+ RQ+++ SAT+P +++ AR+
Sbjct: 187 GFLPDVEKLLALT----------PKN-------RQSMLFSATMPAAIMSLARA------- 222
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQAD-QSLPPALKHYYCVTKLQHKV 401
+L+ P+ +++A+ AD Q+ P + + K+
Sbjct: 223 ------------------HLNKPV-------HIRAEGADAQATVPDTTQFVYQSHPMDKI 257
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
+ + R + A D + V+ F R + L+ RG KA +HGDL ++AR LKKF+
Sbjct: 258 EVIARILQARDVEKVMIFCRTKRACQRLADDLDDRGFKARAIHGDLTQVAREKALKKFRA 317
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
GE +LV +++ARG+DV V+N + P D Y HR GRTGR G +G V++ + +
Sbjct: 318 GEATILVATDVAARGIDVTGVSHVINHECPDDEKTYVHRIGRTGRAGAKGVAVTLVDWAD 377
Query: 522 VFVVKKMQKQLAVPIQ 537
V K + K L + I+
Sbjct: 378 VTRWKMINKALDLGIE 393
>gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
Length = 461
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 132/454 (29%), Positives = 210/454 (46%), Gaps = 66/454 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL- 169
+F LGL P +L+ L +++PT VQ+ AIP ++ D+++ S TGSGKT A++LP L
Sbjct: 2 TFETLGLHPSILKALAGIHYDIPTPVQTKAIPLAIEGKDLLVSSQTGSGKTAAFMLPALH 61
Query: 170 ----SKVGPLKDKSSNGNGESGKKTDIEA---------VIVAPSRELGMQIVREIKKLLG 216
K+ K+ N +S K A +++ P+REL +QIV ++
Sbjct: 62 RFATQKISETSQKTPNQQRQSAKAKGERARFKAAQPKMLVLTPTRELALQIVSSTEQYSA 121
Query: 217 PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276
++GG +Q + L +N P I+V TPGR+ + +GK+ LVLDE
Sbjct: 122 CLKHFRTVAILGGMPYPKQMQLLARN-PEILVATPGRLIDHMQSGKIRFDQLEILVLDEA 180
Query: 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
D +L F + + ++ A P A RQT++ SAT+ V + ARS
Sbjct: 181 DRMLDMGFIDDIETVI-------AATP----------ATRQTMLFSATLDGIVGKMARSV 223
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
HD ES+ T S +S + N++ + HY V
Sbjct: 224 THDA-----------ESIHIT---------SSASRHENIEQ----------MIHY--VDD 251
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
L HK L + + F R +L G A LHGD+ + AR+ TL
Sbjct: 252 LPHKNRLLAHWLQDRSLGQALVFTATKRDADLVADRLAIAGFSTAALHGDMPQNARNRTL 311
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
K ++G+V++LV +++ARG+D+ V N DLP Y HR GRTGR GR G +S+
Sbjct: 312 AKLRDGKVKILVATDVAARGIDIPSITHVFNYDLPKFPEDYVHRIGRTGRAGRHGLAISL 371
Query: 517 CEEPEVFVVKKMQK--QLAVPIQACEFTEGRLVI 548
+ +K++++ + +P+ E E ++
Sbjct: 372 VSHSDSASMKRIERFTKQTIPVNVIEGFEPKMTF 405
>gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
Length = 419
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 131/428 (30%), Positives = 203/428 (47%), Gaps = 66/428 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ F LGL P +L L GF PTEVQ+ AIP +L+ DV+ + TG+GKT A+ LPI
Sbjct: 2 STQFESLGLCPTILSTLSSLGFEQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPI 61
Query: 169 LSKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
+ K+ +D SN D+ A+++ P+REL Q+ + + ++ K V
Sbjct: 62 IQKLIESEAKRDPQSN---------DVRALVLVPTRELAQQVFDNLVQYAQATELKIVAA 112
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
GG + + Q L + I++ TPGR+ + + FLVLDE D +L F
Sbjct: 113 Y-GGTSMNVQTRNLEQG-CDILIATPGRLIDHMFCKNVSLLKSEFLVLDEADRMLDMGFM 170
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ RI++ A RQT+ SAT + A +P+ VQ
Sbjct: 171 PDIQRILKR-----------------FNAVRQTLFFSATFDKRIKNIAYKLQSEPVEVQV 213
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
S+SNS A+ Q + P K + K + L
Sbjct: 214 -----------------------SASNST--AETVKQMVYPVDK--------KRKAELLA 240
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+ + + Q V+ F T+Q DA+ K L+ G+KAA ++GD + AR L FK G++
Sbjct: 241 YLIGSRNWQQVLVF-TKTKQGSDALVKELKLDGIKAASINGDKSQGARQKALDDFKAGKI 299
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
R L+ +++ARGLD+ E + VVN D+P + Y HR GRTGR G+ G VS E ++
Sbjct: 300 RALIATDVAARGLDIQELEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSFMSRDEHYL 359
Query: 525 VKKMQKQL 532
++ +++ L
Sbjct: 360 LEAIERLL 367
>gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 479
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 212/459 (46%), Gaps = 66/459 (14%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
SA + +F LGL L + G+ PT +QS +P L+ D++ + TGSGKT A
Sbjct: 45 SASAVSPTFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAA 104
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ LPIL ++ + A+I+AP+REL +QI ++I + G + V
Sbjct: 105 FGLPILQRL-------------LQRTQRFYALILAPTRELCLQISQQILAM-GGTLGVTV 150
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSF 282
LVGG + + Q AL K KP +VVG+PGR+ + + + LVLDE D LLS
Sbjct: 151 VTLVGGLDHNTQAIALAK-KPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSL 209
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
+F A+ ++EHVG +P AERQT++ SAT+ V + ++ P+
Sbjct: 210 DFDAALQVLLEHVG-----SP----------AERQTMLFSATMTTKVSKLQKASLKKPVK 254
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
++ S S+LQ Q +P LKH + L H
Sbjct: 255 LEVN--------------------SKYDVASHLQ--QHFLLVPFKLKHTHLAAALLH--- 289
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L +VI F N + L G ++ LHG + + R L KF+
Sbjct: 290 --------LSPSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAA 341
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
E LV E+ +RGLD+ +V+N D+P S Y HR GRT R GR G ++I + +V
Sbjct: 342 ETSCLVATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDV 401
Query: 523 FVVKKMQKQLAVPIQA-CEFTEGRLVIGKEEEKTLEAVR 560
++++ L ++ E T V+ EK LEA+R
Sbjct: 402 EAYQRIEHALGQKLEELTELTATEKVM-PLHEKVLEALR 439
>gi|417948503|ref|ZP_12591648.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
splendidus ATCC 33789]
gi|342809673|gb|EGU44783.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
splendidus ATCC 33789]
Length = 443
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 196/409 (47%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F TE+QS AIP + D++ S TGSGKTLA++LP++ K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK K+ + G VI+AP+REL Q+ E++ +LG +A ++GG N
Sbjct: 63 A--LKTKAFSARDPRG-------VILAPTRELAKQVYGELRSMLGGLSYEAT-LILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALRK P +V TPGR+A+ L G L+LDE D +L F + RI
Sbjct: 113 FNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT+ + + N I
Sbjct: 172 ANAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAN 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E + A P +S G S+ +L Q +Y L HK L R +
Sbjct: 200 EMLDA--PKRIS---VGVSNEQHLDITQK----------FYLCDHLDHKEAILDRVLEEA 244
Query: 412 DAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ + V+ F +T +L D KL + +KA L G+L + R+ + +F+ ++LV
Sbjct: 245 EYRQVMIFTATRADTDRLTD---KLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILV 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RG+D+ V+N D+P + Y HR GRTGR G +G +S+
Sbjct: 302 TTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350
>gi|392555440|ref|ZP_10302577.1| DEAD/DEAH box helicase [Pseudoalteromonas undina NCIMB 2128]
Length = 440
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 197/409 (48%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ ++ KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F + + I
Sbjct: 113 FNDQIKALR-NDPHFVVATPGRLADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E LA RQT++ SAT+ + + A ++N+
Sbjct: 172 NE----------------LADHRLRQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P S +N Q Q+L Y L HK L ++
Sbjct: 202 ----------LKKPKQIMLSAANEQHSDIKQTL-------YLADHLDHKEALLEHFLNQD 244
Query: 412 DAQTVIAFMN---NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F +T +L +A L ++G K+ L GDL + R + F ++L+
Sbjct: 245 NVGQCIIFTATRADTSRLSEA---LNSKGFKSVALAGDLTQSKRLDIMDAFSRENFKILI 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G +S
Sbjct: 302 TTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSFV 350
>gi|408788051|ref|ZP_11199774.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
gi|424911054|ref|ZP_18334431.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847085|gb|EJA99607.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|408486129|gb|EKJ94460.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
Length = 490
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 215/437 (49%), Gaps = 63/437 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL ++ + + G+ PT +Q+ AIP +L+ D++ + TG+GKT A+ LPI+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ D+ +N +I+AP+REL QI ++ + + + + Q+VGGA
Sbjct: 63 MLMKQADRPAN--------RTCRTLILAPTRELVNQIGENLRAFVKKTPLR-INQVVGGA 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ ++Q+ L K I+V TPGR+ ++ A + +LVLDE D++L F + +
Sbjct: 114 SINKQQLQLEKGT-DILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRK 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V A+RQT++ SAT+P ++ A S+ DPL V+
Sbjct: 173 ISKMVP-----------------AKRQTLLFSATMPKAIADLAHSYLTDPLKVEV----- 210
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
T PG K AD+ ++ + V K + L++ ++
Sbjct: 211 ------TPPG-----------------KAADK----VEQYVHFVAGKNDKTELLKKSLNE 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F+ T+ + ++K LE G K A +HG+ + R LK FK+GE++VLV
Sbjct: 244 NPDGRAIVFLR-TKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVA 302
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ V N DLP Y HR GRT R GR G ++ C E ++ ++
Sbjct: 303 TDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDIE 362
Query: 530 K--QLAVPIQACEFTEG 544
K ++ +P+ + E G
Sbjct: 363 KLMKIDIPVASGERPAG 379
>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
Length = 486
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 199/431 (46%), Gaps = 65/431 (15%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
+ AP A SF +LG+ L+E E G+ PT +Q +IP L DV+ + TGSGKT
Sbjct: 54 DDAPVAKKSFADLGVVESLVEATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTA 113
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
A+ LP+L L +K S + AV++AP+REL QI + + L G
Sbjct: 114 AFALPVLQA---LLEKPSG----------LFAVVMAPTRELAAQIAQTFEAL-GSLINLR 159
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLS 281
+VGG + +Q AL K KP +VV TPGR+ + + ++LVLDE D LL
Sbjct: 160 CAVIVGGLDMVQQAIALGK-KPHVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLD 218
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
+F ++ +I++ + R ER T + SAT+ V R+ DP
Sbjct: 219 MDFGPSIDKILKFIPR-----------------ERHTYLFSATMSSKVESLQRASLKDPA 261
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
V ++ +G S L Q +P ALK YCV
Sbjct: 262 RVSVQS-------------------NGYQVVSTLL--QNFLFIPHALKDVYCV------- 293
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
+++ QT I F+ + L G A LHG L + AR L KF+
Sbjct: 294 ----HLINSFIGQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRA 349
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
G +LV +++ARGLD+ D+V+N DLP DS Y HR GRT R G+ G +S+ + +
Sbjct: 350 GSRDILVATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYD 409
Query: 522 VFVVKKMQKQL 532
+ + +++ +
Sbjct: 410 LEIWLRIEASM 420
>gi|357605298|gb|EHJ64546.1| hypothetical protein KGM_21268 [Danaus plexippus]
Length = 985
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 191/406 (47%), Gaps = 56/406 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F E G P +++ +++ GF+ PT +Q+ P L D+V + TGSGKTL+Y+LP +
Sbjct: 107 TFDEAGFPDYVMDEIDKMGFSKPTPIQAQGWPIALSGCDMVGIASTGSGKTLSYILPAIV 166
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ + KSS G+G A+++AP+REL QI +E+ + K L GGA
Sbjct: 167 HIN-NQPKSSRGDGPI-------ALVLAPTRELAQQI-QEVCDKFANTSKIHNTCLFGGA 217
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q L IV+ TPGR+ + +G+ + C +LVLDE D +L F + +
Sbjct: 218 PKGPQARDLDAGV-EIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRK 276
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+E + R +RQT+M SAT P V A + D L + NV
Sbjct: 277 IIEQI-----------------RPDRQTLMWSATWPREVQSLAAEFLKDYLQI---NVGS 316
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L+ L A + Y TKL TL + + A
Sbjct: 317 LQ----------------------LAANHNILQIIDVCMEYEKETKLS----TLLKEIMA 350
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
I F+ R++ D K++ G A +HGD + R L+ F++G+ +LV
Sbjct: 351 EKENKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDKSQNERDWVLQDFRSGKAPILVAT 410
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+++ARGLDV + V+N D P++S Y HR GRTGR + GT +
Sbjct: 411 DVAARGLDVDDVKFVINFDYPSNSEDYVHRIGRTGRTNKTGTAYTF 456
>gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii]
gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
Length = 479
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 212/459 (46%), Gaps = 66/459 (14%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
SA + +F LGL L + G+ PT +QS +P L+ D++ + TGSGKT A
Sbjct: 45 SASAVSPTFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAA 104
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ LPIL ++ + A+I+AP+REL +QI ++I + G + V
Sbjct: 105 FGLPILQRL-------------LQRTQRFYALILAPTRELCLQISQQILAM-GGTLGVTV 150
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSF 282
LVGG + + Q AL K KP +VVG+PGR+ + + + LVLDE D LLS
Sbjct: 151 VTLVGGLDHNTQAIALAK-KPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSL 209
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
+F A+ ++EHVG +P AERQT++ SAT+ V + ++ P+
Sbjct: 210 DFDAALQVLLEHVG-----SP----------AERQTMLFSATMTTKVSKLQKASLKKPVK 254
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
++ S S+LQ Q +P LKH + L H
Sbjct: 255 LEVN--------------------SKYDVASHLQ--QHFLLVPFKLKHTHLAAALLH--- 289
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L +VI F N + L G ++ LHG + + R L KF+
Sbjct: 290 --------LSPSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAA 341
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
E LV E+ +RGLD+ +V+N D+P S Y HR GRT R GR G ++I + +V
Sbjct: 342 ETSCLVATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDV 401
Query: 523 FVVKKMQKQLAVPIQA-CEFTEGRLVIGKEEEKTLEAVR 560
++++ L ++ E T V+ EK LEA+R
Sbjct: 402 EAYQRIEHALGQKLEELTELTATEKVM-PLHEKVLEALR 439
>gi|388542954|ref|ZP_10146246.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. M47T1]
gi|388279040|gb|EIK98610.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. M47T1]
Length = 461
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 203/425 (47%), Gaps = 68/425 (16%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F L L +L LE G+ T +Q+ ++P ILK D++ Q+ TGSGKT A+ + +
Sbjct: 5 ATAFNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGL 64
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L+ + P + +A+I+ P+REL Q+ +EI++L D V L G
Sbjct: 65 LNPINP-------------RYFGCQALIMCPTRELADQVAKEIRRLARAEDNIKVLTLCG 111
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q +L ++ I+VGTPGRI + G L G LVLDE D +L F +++
Sbjct: 112 GVSFGPQIASL-EHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDSI 170
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+E R RQT++ SAT P + + A + DP V+A
Sbjct: 171 EDIIEQTPAR-----------------RQTLLFSATYPVGIKQLASKFMRDPQTVKA--- 210
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
ESM A +S ++ + +Y ++ + ++ + + +
Sbjct: 211 ---ESMHA---------------DSQIE------------QRFYEISP-EERLSAVTKAL 239
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
Q+ +AF +Q ++ V L A+G+ A L+GDL + R L F N VLV
Sbjct: 240 GHFRPQSCVAFCYTKQQCQEVVDHLTAKGISAVALNGDLEQRDRDQVLAMFANRSTSVLV 299
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI---CEEPEVFVV 525
+++ARGLD+ D+V+N++L DS + HR GRTGR G G +S E +
Sbjct: 300 ATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGENGLAISFVAPAEAQRAQAI 359
Query: 526 KKMQK 530
+++QK
Sbjct: 360 EQLQK 364
>gi|407068947|ref|ZP_11099785.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
cyclitrophicus ZF14]
Length = 443
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 187/408 (45%), Gaps = 62/408 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F TE+QS AIP + D++ S TGSGKTLA++LP++ K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK K+ + G VI+AP+REL Q+ E++ +LG +A ++GG N
Sbjct: 63 A--LKTKAFSAKDPRG-------VILAPTRELAKQVYGELRSMLGGLSYEAA-LILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALRK P +V TPGR+A+ L G L+LDE D +L F + RI
Sbjct: 113 FNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT L
Sbjct: 172 ANAAKHR----------------RRQTLMFSAT--------------------------L 189
Query: 352 ESMPATGPGN--LSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ G N L P S SN +Q L K Y C L HK L R +
Sbjct: 190 DHAEVNGIANEMLDAPKRISVGVSN------EQHLDITQKFYLC-DHLDHKEAILDRVLE 242
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + V+ F KL + +KA L G+L + R+ + +F+ ++LVT
Sbjct: 243 EAEYRQVMIFTATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVT 302
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++++RG+D+ V+N D+P + Y HR GRTGR G +G +S+
Sbjct: 303 TDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350
>gi|453331363|dbj|GAC86942.1| ATP-dependent RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 572
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 139/505 (27%), Positives = 231/505 (45%), Gaps = 79/505 (15%)
Query: 61 PTNKNKSNKPKKHS-PIEIP-KAKVKAVRSDGIKAAGVKKSLEIESAPFAANS------- 111
P ++ +P+K+ P+E+P +A V V AA V+ + AP A +
Sbjct: 10 PKPPSRRGRPRKNPLPVEVPAEAPVTEV------AAIVEVETKTTEAPVAPETSETSADQ 63
Query: 112 --FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
F +LGL ++ ++ G+ PT +Q+ AIP +LK HDV+ + TG+GKT ++ LP+L
Sbjct: 64 PRFADLGLAEPIMRAIQELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPML 123
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
K+ +G + ++I+ P+REL +Q+ K L G + L+GG
Sbjct: 124 EKL----------SGSRARARMPRSLILEPTRELALQVADNFK-LYGKYLRLTHALLIGG 172
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ + Q E L + +++ TPGR+ ++ G + LV+DE D +L F +
Sbjct: 173 ESMAEQREVLNRGV-DVLIATPGRLLDLFGRGGILLTQTSTLVIDEADRMLDMGFIPDIE 231
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+IV + R RQT+ SAT+ + R A ++
Sbjct: 232 KIVSLLPR-----------------NRQTLFFSATMAPEIRRLADAF------------- 261
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
LS P+ + S + A ++ L V + K LR+ +
Sbjct: 262 ------------LSNPVQITVSRPSSVATTIEEGL--------IVVEEDEKRRALRKLLR 301
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ D Q+ I F N R + L G A LHGDL + R +TL FK+GE+++LV
Sbjct: 302 SQDVQSAIVFCNRKRDVDMLQRYLTKHGFAAGHLHGDLAQSLRFSTLDSFKSGELKILVC 361
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++ARG+D+ V N DLP ++ Y HR GRTGR G+ G SI + +++ ++
Sbjct: 362 SDVAARGIDIGGLSHVFNFDLPFNAEDYVHRIGRTGRAGKHGHAFSIAGPRDRRLLEAIE 421
Query: 530 KQLAVPIQACEFTEGRLVIGKEEEK 554
I EF E V +E++
Sbjct: 422 TLTGKVIARLEFPEIHSVDWAQEDE 446
>gi|146284217|ref|YP_001174370.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
gi|145572422|gb|ABP81528.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
Length = 512
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 206/423 (48%), Gaps = 68/423 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F L L +L LE G+ T +Q+ ++P +LK HD++ Q+ TGSGKT A+ + +L
Sbjct: 57 AFSTLPLSAAMLANLEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLD 116
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ P + +A+++ P+REL Q+ +E+++L +D + L GG
Sbjct: 117 PLNP-------------RYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGV 163
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q +L ++ ++VGTPGR+ E G L G LVLDE D +L F +A+
Sbjct: 164 SIGPQIASL-EHGAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAE 222
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ G P A+RQT++ SAT P S+ + A S+ P V+ +++
Sbjct: 223 II-------GQTP----------AKRQTLLFSATYPASIEQLAASFMRAPQQVRVESL-- 263
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+++ Q +Q + P + ++D + R + +
Sbjct: 264 ---------------------HTDSQIEQRFYEIDP-----------EQRLDAVARLLAS 291
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ +AF +Q ++ V L +G+ AA L+GDL + R L F N + VLV
Sbjct: 292 FRPESCVAFCFTKQQCQELVEYLNGKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVAT 351
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF---VVKK 527
+++ARGLD+ D+V+N++L D + HR GRTGR G +G S+ E ++K
Sbjct: 352 DVAARGLDIDALDMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIEK 411
Query: 528 MQK 530
+QK
Sbjct: 412 LQK 414
>gi|162448970|ref|YP_001611337.1| ATP-independent RNA helicase [Sorangium cellulosum So ce56]
gi|161159552|emb|CAN90857.1| ATP-independent RNA helicase [Sorangium cellulosum So ce56]
Length = 624
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 203/438 (46%), Gaps = 60/438 (13%)
Query: 102 IESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKT 161
+E+ P +A SF LG+ P LL L G+ PT +Q AIP +L D++ Q+ TG+GKT
Sbjct: 1 METTPSSA-SFAALGIAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKT 59
Query: 162 LAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKK 221
A+ LP+L ++ GE + EA+++ P+REL MQ+ + + G
Sbjct: 60 AAFALPLLQRL--------EIGGEPPRLP--EALVLVPTRELAMQVAEAMHR-YGRRLGV 108
Query: 222 AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLS 281
V + GG +Q ALR+ +VV TPGR + G L G R +VLDE DE+L
Sbjct: 109 QVLSVYGGQPFGQQLRALRRGV-HVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLD 167
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
F EA+ I+ A P RQT++ SAT+P + A +P+
Sbjct: 168 MGFAEALEEILS-------ATP----------GARQTVLFSATLPPRIAAIAGRHLREPV 210
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
V+ ++G K A LP + Y V + HK
Sbjct: 211 RVK---------------------IAGE--------KAAPGELPRVRQTAYIVPR-AHKS 240
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
L R + D + I F ++ + L ARG +A LHG + R + +F+
Sbjct: 241 AALTRVLDMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRA 300
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
G +LV +++ARGLD+ V+N D+P Y HR GRTGR GR G +++ E E
Sbjct: 301 GTAELLVATDVAARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPRE 360
Query: 522 VFVVKKMQKQLAVPIQAC 539
++++ +++ I+A
Sbjct: 361 HYLIRNVERLTGQRIEAA 378
>gi|383775706|ref|YP_005460272.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
gi|381368938|dbj|BAL85756.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
Length = 622
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 193/409 (47%), Gaps = 61/409 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELG+ +E L G +Q A+P L+ D++ Q+ TG+GKTL + LP+L
Sbjct: 23 TFAELGVRAETVEALSAAGITHAFAIQEYALPIALRGTDLIGQAPTGTGKTLGFGLPLLE 82
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+V ++ G GK +A+IV P+RELG+Q+ R++ G + V + GG
Sbjct: 83 RV------TAPSEGADGKP---QALIVVPTRELGLQVARDLAAA-GSTRGVRVLPIYGGV 132
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL+K I+VGTPGR+ +++ +L R LVLDE D +L F + + +
Sbjct: 133 AYEPQVDALKKGV-EILVGTPGRLLDLAKQKQLKLGSVRALVLDEADRMLDLGFLDDVEK 191
Query: 291 IVEHVGRRSGANPREPKSALAMRAE-RQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I LAM + RQT++ SAT+P ++ +R + +P+ + A +
Sbjct: 192 I------------------LAMLPDQRQTMLFSATMPDPIVALSRRFLRNPVTIHAGHT- 232
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
A+ + P K T +K++ + R +
Sbjct: 233 ------------------------------AESAASPLTKQVVYRTHPMNKLEMVARILQ 262
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A + F R L+ RG A +HGDLG+ AR L+ F+ G++ VLV
Sbjct: 263 ARGRGLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDVLVA 322
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
+++ARGLDV+ V+N D P D Y HR GRTGR G G ++ +
Sbjct: 323 TDVAARGLDVSGVTHVINYDCPEDPETYTHRIGRTGRAGATGVAITFVD 371
>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase [Maricaulis maris MCS10]
gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
Length = 498
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 200/424 (47%), Gaps = 60/424 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL P LLE ++ G++ PT +Q+ AIP+ L DV+ + TG+GKT ++ LP++
Sbjct: 2 TFAELGLSPKLLEAIQEAGYSEPTPIQAGAIPAALAGRDVLGIAQTGTGKTASFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ S G ++ ++I+AP+REL Q + K ++ L+GG
Sbjct: 62 RL-------SRGRAKARMP---RSLIIAPTRELAAQCAENFETY-SKGQKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
QEE L K +++ TPGR+ + GKL G + LV+DE D +L F + +
Sbjct: 111 AFGPQEEILNKGA-DVLIATPGRLLDHFGRGKLLMTGVQMLVVDEADRMLDMGFIPDLEK 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I V P P+ RQT+ SAT+P + + DP V+
Sbjct: 170 IFSLV-------PPAPR--------RQTLFFSATMPKEIQSLVDRFLRDPERVEV----- 209
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S PA N++ M + NS + A LR+ +
Sbjct: 210 --SRPAQTGANITQLMIRLTDNSAKAKRLA-----------------------LRQAMSR 244
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ I F N R + L+ G AA +HGDL + AR+ TL FK G +R LV +
Sbjct: 245 EGVKNGIIFSNRKRDVDVVARSLQRHGFSAAPIHGDLDQSARTATLADFKAGTLRFLVAS 304
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVVKK 527
+++ARGLD+ + V N D+P + Y HR GRTGR G+ G V+I +E + V K
Sbjct: 305 DVAARGLDIPDVSHVFNYDMPHHADDYVHRIGRTGRAGKSGESVTIFAPGDEKSLAAVLK 364
Query: 528 MQKQ 531
+ K+
Sbjct: 365 LIKE 368
>gi|380512805|ref|ZP_09856212.1| ATP-dependent RNA helicase (cold-shock dead box protein), partial
[Xanthomonas sacchari NCPPB 4393]
Length = 480
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 207/413 (50%), Gaps = 64/413 (15%)
Query: 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188
G+ P+ +Q+A IP++L D++ Q+ TG+GKT A+ LPILS++ + K
Sbjct: 8 GYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRLDFAQRKP--------- 58
Query: 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
+A+++AP+REL +Q+ + V + GG +Q AL++ +VV
Sbjct: 59 ----QALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGV-HVVV 113
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
GTPGR+ + G L + LVLDE DE+L F + + +++ + P+S
Sbjct: 114 GTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL----------PES 163
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSG 368
RQ + SAT+P ++ R A+++ +DP A+ +I S
Sbjct: 164 -------RQVALFSATMPPAIKRIAQTYLNDP----AEVII----------------ASK 196
Query: 369 SSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428
+++++N++ + Y+ V+ L HK+D L R + +I F +
Sbjct: 197 TTTSANIR------------QRYWAVSGL-HKLDALTRILEVEPFDAMIIFARTKAGTDE 243
Query: 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488
KL+ARG+ AA ++GD+ + R +++ K+G++ VLV +++ARGLDV V+N
Sbjct: 244 LAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDVLVATDVAARGLDVERISHVLNY 303
Query: 489 DLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEF 541
D+P D+ Y HR GRTGR GR G + E +++ +++ PI+ +
Sbjct: 304 DIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAIERATRQPIEEMQL 356
>gi|367026946|ref|XP_003662757.1| hypothetical protein MYCTH_115944 [Myceliophthora thermophila ATCC
42464]
gi|347010026|gb|AEO57512.1| hypothetical protein MYCTH_115944 [Myceliophthora thermophila ATCC
42464]
Length = 515
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 141/442 (31%), Positives = 211/442 (47%), Gaps = 61/442 (13%)
Query: 104 SAPFAANSFLE-LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
+AP AN+ E LGL P L++ L PT +Q +IP +LK D + S TGSGKT+
Sbjct: 77 TAPLDANTTFESLGLRPWLVQSLANMAIKRPTAIQRESIPMLLKGRDCIGGSRTGSGKTV 136
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
A+ +PIL K + + I AVI+ P+REL +QI +IK + P KA
Sbjct: 137 AFAVPILQKW-------------AENPSAIFAVILTPTRELALQIYEQIKAISAPHSLKA 183
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDE 278
+ + GGA+ Q AL +P +V+ TPGR+A+ I +G+ G RF+VLDE D
Sbjct: 184 IL-VTGGADMRSQAIAL-AQRPHVVIATPGRLADHIRTSGEDTICGLRRVRFVVLDEADR 241
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
LL+ N +M VE E AL AERQT++ +AT+
Sbjct: 242 LLAANGPGSMLPDVE-----------ECLGALPPPAERQTLLFTATI------------- 277
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
V+ L+SMP PG P+ ++ + ++PP L + +
Sbjct: 278 ------TPEVMALKSMPRP-PGR--DPVFVCEVDTE------NLAIPPTLNQMHLQVPVT 322
Query: 399 HKVDTLR--RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
H+ L A ++VI F N T L + LH L + R L
Sbjct: 323 HREHYLHIFLLTPANVEKSVIIFCNRTTTADFLHHLLRLLDHRVTSLHSRLPQRQRIDNL 382
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+F+ R+LV +++ARGLD+ E LV+N D+P D Y HR GRT R GR+G V+
Sbjct: 383 ARFRASAARILVATDVAARGLDIPEVKLVINYDIPRDPDDYIHRVGRTARAGRKGDAVTF 442
Query: 517 CEEPEVFVVKKMQKQLAVPIQA 538
+ +V +V ++K++ ++A
Sbjct: 443 VGQRDVELVLAIEKRVGRQMEA 464
>gi|359439170|ref|ZP_09229149.1| probable DEAD-box ATP-dependent RNA helicase SH0956
[Pseudoalteromonas sp. BSi20311]
gi|359445450|ref|ZP_09235186.1| probable DEAD-box ATP-dependent RNA helicase SH0956
[Pseudoalteromonas sp. BSi20439]
gi|358026206|dbj|GAA65398.1| probable DEAD-box ATP-dependent RNA helicase SH0956
[Pseudoalteromonas sp. BSi20311]
gi|358040727|dbj|GAA71435.1| probable DEAD-box ATP-dependent RNA helicase SH0956
[Pseudoalteromonas sp. BSi20439]
Length = 440
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/409 (31%), Positives = 198/409 (48%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ ++ KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F + + I
Sbjct: 113 FNDQIKALR-NDPHFVVATPGRLADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E LA RQT++ SAT+ + + A ++N+
Sbjct: 172 NE----------------LADHRLRQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P S +N Q Q+L Y L HK L ++
Sbjct: 202 ----------LKKPKQIMLSAANEQHSDIKQTL-------YLADHLDHKEALLEHFLNQD 244
Query: 412 DAQTVIAFMN---NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F +T +L ++ L ++G K+ L GDL + R + F ++L+
Sbjct: 245 NVGQCIIFTATRADTSRLSES---LNSKGFKSVALAGDLTQSKRLDIMDAFSRENFKILI 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G +S+
Sbjct: 302 TTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSLV 350
>gi|408489495|ref|YP_006865864.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
gi|408466770|gb|AFU67114.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
Length = 423
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 212/437 (48%), Gaps = 69/437 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP---I 168
F LGL L++ + +G++ PT +Q +IP++L+ DV+ + TG+GKT + LP +
Sbjct: 3 FKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQL 62
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
LS+ PL+++ + A+I+ P+REL Q+ + +K D ++ + G
Sbjct: 63 LSQTPPLRNRP------------VRALILTPTRELAAQVHQSVKDYGKFVDLRST-VIFG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N+ Q LR N ++V TPGR+ +++ G L LVLDE D +L F +
Sbjct: 110 GVNQKSQVSTLR-NGVDVLVATPGRLIDLNNQGLLSLAKVEILVLDEADRMLDMGFLRDI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + PK +RQT++ SAT FS R RS + L KN
Sbjct: 169 KKIMKLI----------PK-------QRQTLLFSAT--FS--REIRSLASEFL----KNP 203
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +ES P N+ ++A + + Y V K + K D L + +
Sbjct: 204 VSVESTP---------------ENTTVEAIE---------QQVYRVAK-EKKTDLLIKLI 238
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ + V+ F KLEA + AA +HG+ + AR+ L FK+G V+VLV
Sbjct: 239 SEGNWEQVLVFSRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVLV 298
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
++++RGLD+ VVN +LP S Y HR GRTGR G G VS+ E +K +
Sbjct: 299 ATDIASRGLDIPLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLVSADETVFLKDI 358
Query: 529 QKQLA--VPIQACEFTE 543
+K + +P+ E E
Sbjct: 359 EKLIGDKIPMDIIEGFE 375
>gi|290994831|ref|XP_002680035.1| ATP-dependent RNA helicase [Naegleria gruberi]
gi|284093654|gb|EFC47291.1| ATP-dependent RNA helicase [Naegleria gruberi]
Length = 629
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 209/453 (46%), Gaps = 74/453 (16%)
Query: 77 EIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEV 136
E+ K+K + D + VK + + P AA F E LPP L++ +ER GF PT V
Sbjct: 121 ELFKSKSTGINFDAYEDIPVKVTGKDIIPPIAA--FKEANLPPKLMQNIERAGFGKPTPV 178
Query: 137 QSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI---- 192
Q +IP +L D++ + TGSGKT A+L PI+S N + G +T +
Sbjct: 179 QKHSIPIVLAGRDLLSCAQTGSGKTCAFLFPIIS----------NLMTQPGYETVMPHPE 228
Query: 193 ---------EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNK 243
+I+AP+REL QI E +K + ++ V GGA Q + L +
Sbjct: 229 LMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGRRTVVAY-GGAAIQYQLKQLERG- 286
Query: 244 PAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANP 303
I+V TPGR+ ++ G + H ++LVLDE D +L F + IVE
Sbjct: 287 CDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIRYIVE---------- 336
Query: 304 REPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLS 363
K+ + +R T+M SAT P ++ AR + H+ L NL+
Sbjct: 337 ---KTGMPAPGQRITLMFSATFPKNIQTLARDFLHNNL-------------------NLT 374
Query: 364 GPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNT 423
GS+ + LQ K YC K K D + + +++ T++ F+
Sbjct: 375 VGRVGSTHENILQ------------KFVYC--KDDEKRDLMLEAIASVETLTLV-FVKTK 419
Query: 424 RQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECD 483
++ + L G K++ +HGD + R T L+ F+ G +LV ++++RGLD+ +
Sbjct: 420 KEASILEYFLMKNGFKSSSIHGDKTQRERETALENFRRGITPILVATDVASRGLDINDVG 479
Query: 484 LVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
V+N DLP + Y HR GRTGR G G S
Sbjct: 480 HVINYDLPENIEDYVHRIGRTGRAGNTGISTSF 512
>gi|367050892|ref|XP_003655825.1| hypothetical protein THITE_2119963 [Thielavia terrestris NRRL 8126]
gi|347003089|gb|AEO69489.1| hypothetical protein THITE_2119963 [Thielavia terrestris NRRL 8126]
Length = 577
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 207/448 (46%), Gaps = 69/448 (15%)
Query: 104 SAPFAANSFLE-LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
+AP AN+ E LG+ P L++ L PT +Q +IP +LK D + S TGSGKT+
Sbjct: 139 TAPLDANTTFESLGVRPWLVQSLANMAIKRPTAIQRESIPMLLKGRDCIGGSRTGSGKTV 198
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
A+ +PIL K + + I VI+ P+REL +QI +IK + P KA
Sbjct: 199 AFSVPILQKW-------------AENPSAIFGVILTPTRELALQIYEQIKAISSPHSLKA 245
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDE 278
+ LV G + R + +P IV+ TPGR+A+ I +G+ G RF+VLDE D
Sbjct: 246 I--LVTGGSDMRSQAIALAQRPHIVIATPGRLADHIRTSGEDTVCGLRRVRFVVLDEADR 303
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVI---RAARS 335
LL+ N +M VE E AL AERQT++ +AT+ V+ R
Sbjct: 304 LLAANGPGSMLPDVE-----------ECLGALPPPAERQTLLFTATITPEVMALKSMPRQ 352
Query: 336 WGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC-- 393
G DP+ V + + ++PP L +
Sbjct: 353 PGRDPVFV-------------------------------CEVDTENLAIPPTLNQMHLQV 381
Query: 394 -VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLAR 452
VT +H + +D ++VI F N T L + LH L + R
Sbjct: 382 PVTHREHYLHMFLLTPANVD-KSVIIFCNRTSTADFLHHLLRLLDHRVTALHSKLPQRQR 440
Query: 453 STTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGT 512
L +F+ R+LV +++ARGLD+ E LV+N D+P D Y HR GRT R GR+G
Sbjct: 441 IDNLARFRASAARILVATDVAARGLDIPEVKLVINYDIPRDPDDYIHRVGRTARAGRKGD 500
Query: 513 VVSICEEPEVFVVKKMQKQLAVPIQACE 540
V+ + +V +V ++K++ ++A +
Sbjct: 501 AVTFVGQRDVDLVLAIEKRVGRQMEAWQ 528
>gi|452824121|gb|EME31126.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 573
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 212/437 (48%), Gaps = 77/437 (17%)
Query: 121 LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180
LLE +ER GF P +QS+AIP I + DV + S+TGSGKTLA+LLPIL
Sbjct: 79 LLENIERWGFQSPLPIQSSAIPYIKRGLDVTLGSHTGSGKTLAFLLPILE---------- 128
Query: 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR 240
G + + + I+ P+REL +QI + + L +++ L+GGAN RQ ++L+
Sbjct: 129 ---GINVQHKQPQVFIIEPTRELCVQIAKVCESLASNMGIRSI-SLIGGANIQRQIDSLK 184
Query: 241 KNKPAIVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRS 299
+ +P IV+GTPGR+ E+ L+ +V+DE+D L
Sbjct: 185 ERQPHIVLGTPGRLYELLIERHILNATQVSIVVIDEVDHCLDM----------------- 227
Query: 300 GANPREPKSALAMRAER-QTIMVSATVPFS-VIRAARSWGHDPLLVQAKNVIPLESMPAT 357
+N + ++ L A R QTI SAT V+ A++ + ++ +++ + E P
Sbjct: 228 PSNGEKLEALLQRCASRKQTIFCSATCSSQCVVEASKRYQNNAVVLGS------EWTPHG 281
Query: 358 GPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK-VDTLRRCV--HALDAQ 414
P N+ H++ +T +HK ++ +R + H L +
Sbjct: 282 VPQNI---------------------------HHFMITTSKHKHLEAIRSILFAHPLPS- 313
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
VI F+N+ + KL+ +K + G+ K+ R+ LK F+ + +LV E+ A
Sbjct: 314 AVIIFVNDQHRAGVIASKLQEFKLKVTYMQGNQTKMERAKVLKDFRQLKYPILVCTEVLA 373
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534
RG+D V+ L+LPTD+ HY HRAGR GR G G SI FV++K K L +
Sbjct: 374 RGMDFPFVSHVIQLELPTDAQHYLHRAGRCGRAGVTGFCFSIVSPEYQFVMRKFSKALNI 433
Query: 535 PIQACE------FTEGR 545
I + E F++GR
Sbjct: 434 TIHSVEIRNNKIFSKGR 450
>gi|315126555|ref|YP_004068558.1| DEAD/DEAH box helicase [Pseudoalteromonas sp. SM9913]
gi|315015069|gb|ADT68407.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
Length = 440
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/409 (31%), Positives = 198/409 (48%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L +L +G PT++Q+ A+P+ L HD+ QS TGSGKTLA+LLP + +
Sbjct: 3 FTDLGIDTRLETQLAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
V +K K+ + K D +IVAP+REL Q+ +++ L+ ++ KAV+ ++GG N
Sbjct: 63 V--MKQKALS-------KRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVK-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR N P VV TPGR+A+ L G L+ DE D +L F + + I
Sbjct: 113 FNDQIKALR-NDPHFVVATPGRLADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E LA RQT++ SAT+ + + A ++N+
Sbjct: 172 NE----------------LADHRLRQTLLFSATLDHAQVDAL-----------SRNL--- 201
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P S +N Q Q+L Y L HK L ++
Sbjct: 202 ----------LKKPKQIMLSAANEQHSDIKQTL-------YLADHLDHKEALLEHFLNQD 244
Query: 412 DAQTVIAFMN---NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F +T +L ++ L ++G K+ L GDL + R + F ++L+
Sbjct: 245 NVGQCIIFTATRADTSRLSES---LNSKGFKSVALAGDLTQSKRLDIMDAFSRENFKILI 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G +S+
Sbjct: 302 TTDVASRGLDLLSVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSLV 350
>gi|444379626|ref|ZP_21178803.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
gi|443676355|gb|ELT83059.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
Length = 410
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/406 (32%), Positives = 198/406 (48%), Gaps = 65/406 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
L P L + L G++ PT++Q AIP +L+ DV+ + TG+GKT A+ LP++ ++
Sbjct: 9 LHPTLQQTLSELGYSEPTDIQQQAIPKVLEGKDVMGAAQTGTGKTAAFTLPLIHQL---- 64
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
E G K +IV P+REL Q+ ++ + + K V L GGAN + Q+
Sbjct: 65 -------LERGVKGSARVLIVTPTRELAQQVYDKVAEYGQHTSLKCV-ALYGGANINPQK 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
L K KP I+VGTPGR+ + G L + LVLDE D +L F + R+++ +
Sbjct: 117 NQLAK-KPEIIVGTPGRLLDHLHIGTLQLNSLDTLVLDEADRMLDMGFISDIKRLMKKM- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
PK ERQT+ SAT P V+ A +DP+ V+
Sbjct: 175 ---------PK-------ERQTLFFSATYPKQVMDLAYRLLNDPVRVEV----------- 207
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
S +N A+ +Q + P + + K + L + + + Q V
Sbjct: 208 --------------STANSTAETVNQLVHPVDR--------KRKRELLSYLIGSRNLQQV 245
Query: 417 IAFMNNTRQLKDAVF-KLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+ F TRQ +A+ +L+ G+ A +HG+ + AR+ L+ FKNG VRVLV +++AR
Sbjct: 246 LVFA-KTRQSTEALANELKLDGLAAEAIHGEKTQGARNRALEGFKNGTVRVLVATDVAAR 304
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
GLD+ D V N +LP Y HR GRTGR G+ G +S+ E
Sbjct: 305 GLDIPSLDTVFNYELPHQPEDYIHRIGRTGRAGKSGMAISLVSREE 350
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/402 (31%), Positives = 193/402 (48%), Gaps = 59/402 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
F ELGL P L+ + G+ T +Q+AAIP L DV+ + TG+GKT A+ LP++
Sbjct: 2 TEFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
DK NG K A+++AP+REL Q+ +K K + L+GG
Sbjct: 62 -------DKLMNGRA---KARMPRALVIAPTRELADQVASSFEKY-AKGTKLSWALLIGG 110
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ QE+ L + +++ TPGR+ + GKL G +FLV+DE D +L F +
Sbjct: 111 VSFGDQEKKLDRGV-DVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIE 169
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI + PK +QT+ SAT+P + R + + DP+ ++A
Sbjct: 170 RIFKMT---------PPK--------KQTLFFSATMPPEITRLTKQFLKDPVRIEA---- 208
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S PAT N++ M S S+ +AK+ LR +
Sbjct: 209 ---SRPATTNENITQLMVKVPS-SDPKAKRL----------------------ALRALIE 242
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+T I F N ++ L++ G AA +HGDL + R+ TL F++G +++LV
Sbjct: 243 KAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKILVA 302
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG 511
++++ARGLD+ V N D+P + Y HR GRTGR GR G
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSG 344
>gi|83647394|ref|YP_435829.1| ATP-dependent RNA helicase DbpA [Hahella chejuensis KCTC 2396]
gi|83635437|gb|ABC31404.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
Length = 493
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/432 (29%), Positives = 205/432 (47%), Gaps = 64/432 (14%)
Query: 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166
+A +F L L P LL+ L G++ T +Q+ ++PSIL DV+ Q TGSGKT A+ L
Sbjct: 32 LSATAFSSLSLHPGLLQNLSTLGYHSMTPIQAQSLPSILAGKDVIAQGKTGSGKTAAFGL 91
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
+L+K+ K+ ++A+++ P+REL Q+ +EI++L V L
Sbjct: 92 GLLNKLDI-------------KRFCVQALVLCPTRELADQVAKEIRRLARAIHNIKVLTL 138
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q +L ++ IVVGTPGR+ E G L LVLDE D +L F+
Sbjct: 139 CGGMPFGPQIGSL-EHGAHIVVGTPGRVEEHLRKGTLVLDQLHTLVLDEADRMLEMGFQA 197
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
A+ IVE M A+RQT++ SAT P + A +P++V+ +
Sbjct: 198 ALDAIVEK-----------------MPAQRQTLLFSATYPNQIQSIAERVMLNPVMVKVE 240
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ S N+++Q ++YY V H+++ LR
Sbjct: 241 S---------------------SHDNASIQ------------QYYYKVEGDTHRLEVLRL 267
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ ++ + F N R+ ++ L + G A LHGDL + R TL F N +
Sbjct: 268 LLLQYKPESTVVFCNTKRETQEVADMLVSHGFSAVALHGDLEQRDRDQTLVCFANKSASI 327
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLD+ D V+N + D + HR GRTGR G G ++ E E++ +
Sbjct: 328 LVATDVAARGLDIDALDAVINFHIARDPEVHVHRIGRTGRAGASGVACTLFSESEMYKIG 387
Query: 527 KMQKQLAVPIQA 538
++++ + + A
Sbjct: 388 RLEEYQEIIVSA 399
>gi|418300341|ref|ZP_12912167.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355533754|gb|EHH03074.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 490
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/437 (28%), Positives = 215/437 (49%), Gaps = 63/437 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL ++ + + G+ PT +Q+ AIP +L+ D++ + TG+GKT A+ LPI+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ D+ +N +I+AP+REL QI ++ + + + + Q+VGGA
Sbjct: 63 MLMKQADRPAN--------RTCRTLILAPTRELVNQIGENLRSFVKKTPLR-INQVVGGA 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ ++Q+ L K I+V TPGR+ ++ A + +LVLDE D++L F + +
Sbjct: 114 SINKQQLQLEKGT-DILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRK 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V A+RQT++ SAT+P ++ + ++ DP+ V+
Sbjct: 173 ISKMVP-----------------AKRQTLLFSATMPKAIADLSHNYLTDPVKVEV----- 210
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
T PG K AD+ ++ + V K D L++ ++
Sbjct: 211 ------TPPG-----------------KAADK----VEQYVHFVAGKNDKTDLLKKSLNE 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F+ T+ + ++K LE G K A +HG+ + R LK FK+GE++VLV
Sbjct: 244 NPDGRAIVFLR-TKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVA 302
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ V N DLP Y HR GRT R GR G ++ C E ++ ++
Sbjct: 303 TDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDIE 362
Query: 530 K--QLAVPIQACEFTEG 544
K ++ +P+ + E G
Sbjct: 363 KLMKIDIPVASGERPAG 379
>gi|346978651|gb|EGY22103.1| ATP-dependent rRNA helicase rrp-3 [Verticillium dahliae VdLs.17]
Length = 486
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/428 (30%), Positives = 198/428 (46%), Gaps = 65/428 (15%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P A SF +LG+ L+E E G+ PT +Q +IP L+ DV+ + TGSGKT A+
Sbjct: 57 PVAKKSFADLGVVESLVEATEALGYKHPTPIQEKSIPLALEGRDVIGLAETGSGKTAAFA 116
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
LP+L L +K S + AV++AP+REL QI + + L G
Sbjct: 117 LPVLQA---LLEKPSG----------LFAVVMAPTRELAAQIAQTFEAL-GSLINLRCAV 162
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNF 284
+VGG + +Q AL K KP +VV TPGR+ + + ++LVLDE D LL +F
Sbjct: 163 IVGGLDMVQQAIALGK-KPHVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDF 221
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
++ +I++ + R ER T + SAT+ V R+ DP V
Sbjct: 222 GPSIDKILKFIPR-----------------ERHTYLFSATMSSKVESLQRASLKDPARVS 264
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
++ +G S L Q +P ALK YCV
Sbjct: 265 VQS-------------------NGYQVVSTLL--QNYLFIPHALKDVYCV---------- 293
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+++ QT I F+ + L G A LHG L + AR L KF+ G
Sbjct: 294 -HLINSFIGQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSR 352
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
+LV +++ARGLD+ D+V+N DLP DS Y HR GRT R G+ G +S+ + ++ +
Sbjct: 353 DILVATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEI 412
Query: 525 VKKMQKQL 532
+++ +
Sbjct: 413 WLRIEASM 420
>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 442
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 206/438 (47%), Gaps = 68/438 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF EL L L +RL++ GF PT +QSAAIP L+ D++ Q+ TGSGKTLA+L+P++
Sbjct: 3 SFAELSLTSFLADRLQQAGFTAPTPIQSAAIPLALEGRDLLAQAKTGSGKTLAFLIPLIE 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G +G A+++AP+REL +QI E++K PS + GG
Sbjct: 63 RA------VKEGWKPAGSARSPRALVLAPTRELALQIEMELRKYAPPSVTSLA--VYGGV 114
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
R ALR+ P IV+GTPGR+ +++ L G ++V+DE D++L F + R
Sbjct: 115 PIERHYRALRQ-PPMIVIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQR 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + ++RQT++ SAT ++ A S +P
Sbjct: 174 ILQ-----------------LLPSQRQTMLFSATFSPEILTLAESMLKNP---------- 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKH-YYCVTKLQHKVDTLRRCVH 409
+ A PG + P + H YY V +V + +
Sbjct: 207 --ARTAVDPGV---------------------NTPTTITHAYYVVPSESSRVQLIHTLLQ 243
Query: 410 ALDA-QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ ++ + F + ++K +L + G+ + R TL F++G +R LV
Sbjct: 244 SPESGDQSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGRLRTLV 303
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVF-V 524
+++ARGLDV V++ +LP + Y HR GRTGR R G + I EE E +
Sbjct: 304 ATDVAARGLDVPSVSQVIHYELPGNPTSYVHRTGRTGRAERSGATLLILSPKEEHEYLAM 363
Query: 525 VKKMQ---KQLAVPIQAC 539
V++++ K+L +P A
Sbjct: 364 VRRLRIQTKRLTLPALAV 381
>gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
PYR-1]
Length = 494
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 199/429 (46%), Gaps = 62/429 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LG+ ++ L G +Q +P L D++ Q+ TG GKT A+ +P+L
Sbjct: 11 TFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLH 70
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK-AVQQ 225
++ ++ G A+IV P+REL +Q+ ++ K L+ +K V
Sbjct: 71 RITTDTERPLTGIPR--------ALIVVPTRELCIQVYEDLVGASKYLMADETRKLTVTA 122
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
+ GG Q EAL+K +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 123 IYGGRPYEPQIEALQKGVD-VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFL 181
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ RI++ + A+RQ ++ SAT+P +I AR++ P ++A
Sbjct: 182 PDIERILKQI-----------------PAKRQAMLFSATMPDPIITLARTFMTQPTHIRA 224
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
+ P S ++ +S Q +L KV+ +
Sbjct: 225 E-----------------APHSSATHDSTEQFAYRAHAL--------------DKVEMVA 253
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
R + A + F R + +L RG K +HGDLG+ AR LK F+ GEV
Sbjct: 254 RILQAEGRGATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQAAREKALKSFRTGEVD 313
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 314 VLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDELPRW 373
Query: 526 KKMQKQLAV 534
+ K L +
Sbjct: 374 SMIDKALGL 382
>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
Length = 429
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 197/419 (47%), Gaps = 61/419 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LLE L+ +G+ P+ +Q+ AIP+++ DV+ + TG+GKT + LP+L +
Sbjct: 21 FSDLGLGEPLLEALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLER 80
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
L+ G G+ I A+++ P+REL Q++ ++ ++ + GG
Sbjct: 81 ---LRHGKPAGRGQ------IRALVLTPTRELAAQVLENVRAYSSHLPLRS-DVVFGGVK 130
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q LR ++V TPGR+ ++ G LH LVLDE D +L F + R+
Sbjct: 131 ANPQINRLRGGVD-LLVATPGRLLDLHQQGALHFDQLECLVLDEADRMLDMGFIHDIRRL 189
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ M +RQT++ SAT + + A HDP+ +Q V P
Sbjct: 190 IR-----------------LMPVKRQTLLFSATFSAPIRKLASGLLHDPVHLQ---VTP- 228
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
N A+ +Q + P C + K D L + A
Sbjct: 229 ---------------------ENQTARSVEQVVHP------C--DMARKSDLLSHLIRAG 259
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D + V+ F +L G+ AA +HG+ + AR+ L+ FK G +RVLV +
Sbjct: 260 DWRQVLVFSRTKHGANRVADRLSKEGLSAAAIHGNKSQGARTRALQGFKQGNIRVLVATD 319
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARG+D+ + VVNLDLP + Y HR GRTGR G G VS+ E ++K +++
Sbjct: 320 IAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIER 378
>gi|421061112|ref|ZP_15523489.1| DEAD/DEAH box helicase domain protein, partial [Pelosinus
fermentans B3]
gi|392451871|gb|EIW28841.1| DEAD/DEAH box helicase domain protein, partial [Pelosinus
fermentans B3]
Length = 344
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 197/410 (48%), Gaps = 73/410 (17%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
F LG+ + L G PTE+Q+ AIP+I+ DVV QS TG+GKTLA++LPIL
Sbjct: 4 DFTALGIRREIGAILAENGITKPTEIQAQAIPAIMSGKDVVGQSQTGTGKTLAFILPILE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ K ++A+I+ P+REL +QI RE+ KL +D+ +Q L G
Sbjct: 64 KI-------------EISKPIVQALIITPTRELALQITREVAKL---ADQLGIQVLSVYG 107
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ + L K IV+GTPGR+ + G + LVLDE D++L F E +
Sbjct: 108 GQDVDRQIKKL-KGGAQIVIGTPGRLMDHLRRGTIQLENVTKLVLDEADQMLHMGFLEDV 166
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL--LVQAK 346
+V R +N +RQT++ SAT+P + A + PL +Q K
Sbjct: 167 EELV-----RQTSN------------KRQTMLFSATMPSKIRGLADRYMRKPLDIRIQTK 209
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N I L+ + KQ +P + K + KL +D R
Sbjct: 210 N-ITLDEI-----------------------KQIMVEVPESEK----IVKLSSMIDEYRP 241
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ I F + ++ L +G + ELHG+L + R +K+F+ ++++
Sbjct: 242 YL-------AIVFCHTKKRAIAVNMALSQKGYETDELHGELSQPKREQVMKRFREAKIQI 294
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
LV +++ARGLDV + N D+P D Y HR GRTGR G+ G +++
Sbjct: 295 LVATDIAARGLDVEGVTHIFNYDIPHDVDSYIHRIGRTGRAGQAGMAITL 344
>gi|395203708|ref|ZP_10394801.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium
humerusii P08]
gi|422574412|ref|ZP_16649966.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium
humerusii P08]
Length = 536
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/432 (29%), Positives = 212/432 (49%), Gaps = 57/432 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF +LG+ + + LE G P +Q+ +IP ++ D++ Q+ TG+GKTLA+ + IL
Sbjct: 33 TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 92
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ D+ G E K +A+++ P+REL +Q+ ++I + V + GG
Sbjct: 93 QRITLPGDE---GWEELTTKGKPQALVMCPTRELALQVSQDISTAASVRGAR-VLTVYGG 148
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q +AL+ +VVGTPGR+ ++S L +VLDE DE+L F +
Sbjct: 149 VGYEPQIDALQAGVD-VVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVE 207
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++ G P RQT++ SAT+P ++ ARS + P+ V+A+
Sbjct: 208 NLI-------GRTP----------TPRQTMLFSATMPAPIMALARSQLNRPVHVRAEG-- 248
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
++ QA ++P + Y L K++ + R +
Sbjct: 249 -----------------------ADTQA-----TVPDTQQFVYQAHPLD-KIEIIGRILQ 279
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A DA+ VI F R + L RG KA +HGDL ++AR LK+F++G+V +LV
Sbjct: 280 ANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVTILVA 339
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV----FVV 525
+++ARG+DV V+N + P D Y HR GRTGR G +G V++ + +V +
Sbjct: 340 TDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADVTRWKLID 399
Query: 526 KKMQKQLAVPIQ 537
K + +L+ P++
Sbjct: 400 KALNLELSEPVE 411
>gi|418407317|ref|ZP_12980635.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
gi|358006461|gb|EHJ98785.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
Length = 492
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 215/438 (49%), Gaps = 63/438 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF ELGL ++ + + G+ PT +Q+ AIP +L+ D++ + TG+GKT A+ LPI+
Sbjct: 2 TSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPII 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ D+ +N +I+AP+REL QI ++ + + + + Q+VGG
Sbjct: 62 EMLMKQADRPAN--------RTTRTLILAPTRELVNQIGENLRSFVKKTPLR-INQVVGG 112
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A+ ++Q+ L K ++V TPGR+ ++ A + +LVLDE D++L F +
Sbjct: 113 ASINKQQLQLEKGT-DVLVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLR 171
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I + V A+RQT++ SAT+P ++ A ++ DP+ V+
Sbjct: 172 KISKMVP-----------------AKRQTLLFSATMPKAISELASNFLTDPIKVEV---- 210
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
T PG K AD+ ++ + V K D L++ ++
Sbjct: 211 -------TPPG-----------------KAADK----VEQYVHFVAGKNDKTDLLKKSLN 242
Query: 410 ALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
I F+ T+ + ++K LE G K A +HG+ + R LK FK+GE++VLV
Sbjct: 243 ENPDGRSIVFLR-TKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLV 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+D+ V N DLP Y HR GRT R GR G ++ C E ++ +
Sbjct: 302 ATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDI 361
Query: 529 QK--QLAVPIQACEFTEG 544
+K ++ +P+ + E G
Sbjct: 362 EKLMKIDIPVASGERPAG 379
>gi|149187436|ref|ZP_01865734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
shilonii AK1]
gi|148838972|gb|EDL55911.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
shilonii AK1]
Length = 442
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 188/406 (46%), Gaps = 58/406 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELGL LL+ L F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 3 FKELGLDNRLLKNLSHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK K+ + D AVI+AP+REL Q+ E+K +LG A ++GG N
Sbjct: 63 A--LKSKAFSAR-------DPRAVILAPTRELAKQVYGELKSMLGGLSYDATL-ILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALR+ P +V TPGR+A+ L G L+LDE D +L F + RI
Sbjct: 113 FNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLDTLILDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT+ + + N I
Sbjct: 172 HNAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAA 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E + A P + SN + K Q +Y L HK L R +
Sbjct: 200 EMLDA--------PKRIAIGVSNEEHKDITQK-------FYLCDHLDHKEAILERILEQA 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F + L + +KA L G+L + R+ + +F+ ++LVT +
Sbjct: 245 EYKQVIIFTATRVDTERLTKWLNEKKLKAVALSGNLNQTQRNAIMSQFERHVFKILVTTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++RG+D+A V+N D+P + Y HR GRTGR G +G VS+
Sbjct: 305 VASRGIDIASVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLV 350
>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
Length = 500
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 216/438 (49%), Gaps = 63/438 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF ELGL ++ + + G+ PT +Q+ AIP +L+ D++ + TG+GKT A+ LPI+
Sbjct: 10 TSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPII 69
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ D+ +N + +I+AP+REL QI ++ + + + + Q+VGG
Sbjct: 70 EMLMKQADRPANRTTRT--------LILAPTRELVNQIGENLRSFVKKTPLR-INQVVGG 120
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A+ ++Q+ L K ++V TPGR+ ++ A + +LVLDE D++L F +
Sbjct: 121 ASINKQQLQLEKGT-DVLVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLR 179
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I + V A+RQT++ SAT+P ++ A ++ DP+ V+
Sbjct: 180 KISKMVP-----------------AKRQTLLFSATMPKAISELASNFLTDPIKVEV---- 218
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
T PG K AD+ ++ + V K D L++ ++
Sbjct: 219 -------TPPG-----------------KAADK----VEQYVHFVAGKNDKTDLLKKSLN 250
Query: 410 ALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
I F+ T+ + ++K LE G K A +HG+ + R LK FK+GE++VLV
Sbjct: 251 ENPDGRSIVFLR-TKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLV 309
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+D+ V N DLP Y HR GRT R GR G ++ C E ++ +
Sbjct: 310 ATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDI 369
Query: 529 QK--QLAVPIQACEFTEG 544
+K ++ +P+ + E G
Sbjct: 370 EKLMKIDIPVASGERPAG 387
>gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1]
Length = 399
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 197/428 (46%), Gaps = 66/428 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + L P LL+ + GF P+ +QS AI I+ D + Q+ +G+GKT + + +L
Sbjct: 27 TFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K + +A+I++P+REL +QI + + K LG +GG
Sbjct: 87 VIDT-------------KSKECQALILSPTRELAIQI-QNVVKHLGDYMNIHTHACIGGK 132
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + L++ + IV GTPGR+ ++ L T + L+LDE DEL + F+E ++
Sbjct: 133 NVGEDVKKLQQGQ-QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYE 191
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I +H+ P S + SAT+P V+ + DP+ + K
Sbjct: 192 IYKHL----------PPSVQVVVV-------SATLPREVLEMTSKFTTDPVKILVKR--- 231
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC-VTKLQHKVDTLRRCVH 409
D+ +K YY + K DTL
Sbjct: 232 ------------------------------DEISLSGIKQYYVQCEREDWKFDTLCDLYD 261
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L + F N ++ +++ + +HGD+ + R + + F+ G RVL++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLIS 321
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++ ARG+DV + LV+N DLPTD +Y HR GR+GR GR+GT +++ + +V +K+++
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKELE 381
Query: 530 KQLAVPIQ 537
K + I+
Sbjct: 382 KYYSTKIK 389
>gi|86133373|ref|ZP_01051955.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85820236|gb|EAQ41383.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 606
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 216/445 (48%), Gaps = 76/445 (17%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPIL 169
+F E+GL +++ L G+ PT +Q AIP I+ + D+ + TG+GKT A+ LPIL
Sbjct: 3 TFKEIGLKAPIIKALTDLGYEKPTVIQEKAIPQIISSDTDLKAFAQTGTGKTAAFSLPIL 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
L ++ +N +++A+I++P+REL +QI IK V + GG
Sbjct: 63 E----LLEEDNN---------NVQAIILSPTRELAVQIGNNIKDFCKYLKNVKVTTVYGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
++ Q +L+K IVVGTPGR ++ L R+LVLDE DE+L+ F+E +
Sbjct: 110 SSMEDQIRSLKKG-SQIVVGTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKEELD 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+++E A P +QT++ SAT P V AR++ P+ V
Sbjct: 169 KVLE-------ATPET----------KQTLLFSATFPREVEAIARNYMTTPVEV------ 205
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+G N SGS + S+ YY VT+ + + L+R
Sbjct: 206 ------TSGEKN-----SGSENVSH---------------EYYAVTE-RTRYPALKRIAD 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F R+ ++ L G A LHGDL + R + + KF+ +++LV
Sbjct: 239 LNPDIYAIIFCRTRRETQEVADNLIKDGYNADSLHGDLSQAQRDSVMGKFRKKTIQILVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVVK 526
+++ARGLDV E V+N LP +Y HR+GRTGR G +G + + E+ ++ V++
Sbjct: 299 TDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNKGVSIVLVNNREKGKLRVIE 358
Query: 527 KMQKQLAVPIQACEFTEGRLVIGKE 551
++ KQ +F EG++ GKE
Sbjct: 359 RIIKQ--------KFVEGKVPTGKE 375
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 208/436 (47%), Gaps = 64/436 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + GL P +L+ L +G+ PT +Q+ AIP +LK DV+ + TG+GKT + LPI+
Sbjct: 25 FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GG 229
+ + S+ S + + A+I+ P+REL Q+ +K S ++ LV GG
Sbjct: 85 LMAHANSSA-----SPARHPVRALILTPTRELADQVAANVKAY---SRHTPLRSLVVFGG 136
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ + Q ALR IV+ TPGR+ + ++ + LV+DE D +L F +
Sbjct: 137 MDMTPQTAALRGGV-EIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQ 195
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+ + PK +RQ +M SAT + + A ++ DP+ ++
Sbjct: 196 RIINLL----------PK-------QRQNLMFSATFSPEIKKLAATFLKDPVTIEV---- 234
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ SN A+ Q + Y V + + K D + +
Sbjct: 235 ---------------------ARSNATAENVTQII-------YKVEE-EAKRDAVSFIIR 265
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ VI F N +LE+ G+KA+ +HGD + R L++FKNG + VLV
Sbjct: 266 ERGLKQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIEVLVA 325
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV---VK 526
+++ARGLD+AE V+N DLP ++ Y HR GRTGR G G +S+ + + + ++
Sbjct: 326 TDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDARLLVDIE 385
Query: 527 KMQKQLAVPIQACEFT 542
KM K VP + FT
Sbjct: 386 KMIKHKFVPAELIGFT 401
>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
gi|74627388|sp|Q5A9Z6.1|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
Length = 399
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 196/428 (45%), Gaps = 66/428 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + L P LL+ + GF P+ +QS AI I+ D + Q+ +G+GKT + + +L
Sbjct: 27 TFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K + +A+I++P+REL +QI + + K LG +GG
Sbjct: 87 VIDT-------------KSKECQALILSPTRELAIQI-QNVVKHLGDYMNIHTHACIGGK 132
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + L++ + IV GTPGR+ ++ L T + L+LDE DEL + F+E ++
Sbjct: 133 NVGEDVKKLQQGQ-QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYE 191
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I +H+ P S + SAT+P V+ + DP+ + K
Sbjct: 192 IYKHL----------PPSVQVVVV-------SATLPREVLEMTSKFTTDPVKILVKR--- 231
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC-VTKLQHKVDTLRRCVH 409
D+ +K YY + K DTL
Sbjct: 232 ------------------------------DEISLSGIKQYYVQCEREDWKFDTLCDLYD 261
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L + F N ++ +++ + +HGD+ + R + + F+ G RVL++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLIS 321
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++ ARG+DV + LV+N DLPTD +Y HR GR+GR GR+GT +++ + +V +K+ +
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKEFE 381
Query: 530 KQLAVPIQ 537
K + I+
Sbjct: 382 KYYSTKIK 389
>gi|392415281|ref|YP_006451886.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390615057|gb|AFM16207.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 493
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 199/429 (46%), Gaps = 62/429 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELG+ ++ L G +Q +P L D++ Q+ TG GKT A+ +P+L
Sbjct: 9 TFAELGVRDEIVRALADNGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLH 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK-AVQQ 225
++ ++ G A+IV P+REL +Q+ ++ K L+ +K V
Sbjct: 69 RITTDTERPLTGI--------PRALIVVPTRELCLQVYGDLVGASKYLMADDTRKLTVTA 120
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
+ GG Q EAL+K +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 121 IYGGRPYEPQIEALQKGVD-VVVGTPGRLLDLAQQGHLQLGGLSTLVLDEADEMLDLGFL 179
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ RI++ + A+RQ ++ SAT+P +I AR++ P ++A
Sbjct: 180 PDIERILKQI-----------------PAQRQAMLFSATMPDPIITLARTFMTQPTHIRA 222
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
+ P S ++ ++ Q +L KV+ +
Sbjct: 223 E-----------------APHSAATHDTTEQFAYRAHAL--------------DKVEMVS 251
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
R + A + F R + +L RG K +HGDLG+ AR LK F+ GEV
Sbjct: 252 RILQAEGRGATMIFTRTKRTAQKVADELSERGFKVGAVHGDLGQGAREKALKAFRTGEVD 311
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 312 VLVATDVAARGIDIDDITHVINFQIPEDEQSYVHRIGRTGRAGKTGIAVTLVDWDELPRW 371
Query: 526 KKMQKQLAV 534
+ K L +
Sbjct: 372 SMIDKALGL 380
>gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain-containing protein [Nitratifractor
salsuginis DSM 16511]
gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
DSM 16511]
Length = 462
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 201/428 (46%), Gaps = 67/428 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + L P + + + GF P+ +Q AIP IL+ D+V Q++TG+GKT A+ LPIL
Sbjct: 2 TFKDFDLHPEVAKGVRIAGFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPILD 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ + +IE A+++ P+REL Q+ E+ L G + GG
Sbjct: 62 RIA---------------RGEIERALVITPTRELATQVSDELYHL-GRFAGIRTLAVYGG 105
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
RQ AL IVV TPGR+ ++ GK+ +VLDE DE+L F + +
Sbjct: 106 VGYGRQI-ALIHRGVQIVVATPGRLKDLYQKGKIDVFNPEVVVLDEADEMLDMGFLDDVR 164
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I E++ P++ RQT++ SAT+P + A + ++P +
Sbjct: 165 EIFEYI----------PQN-------RQTLLFSATMPDPIKELADTLLYEPEFI------ 201
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ G + N+ +Q YY V + + + R +
Sbjct: 202 ---------------SVVGEETTKNVDIEQ-----------YYYVINENQRDEAIVRLLE 235
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + F R++ +L+A G AA LHGD+ ++ R +K F+ GE R+L+
Sbjct: 236 TENYDKALIFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILIA 295
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ V N +P D Y HR GRTGR G+RG +++ E +++++
Sbjct: 296 TDVAARGLDIKNVTHVFNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEEFRELQRIR 355
Query: 530 KQLAVPIQ 537
K++ ++
Sbjct: 356 KEVGADMK 363
>gi|417857754|ref|ZP_12502811.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
gi|338823758|gb|EGP57725.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
Length = 491
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/437 (28%), Positives = 214/437 (48%), Gaps = 63/437 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL ++ + + G+ PT +Q+ AIP +L+ D++ + TG+GKT A+ LPI+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ D+ +N +I+AP+REL QI ++ + + + + Q+VGGA
Sbjct: 63 MLMKQADRPAN--------RTTRTLILAPTRELVNQIGDNLRSFVKKTPLR-INQVVGGA 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ ++Q+ L K I+V TPGR+ ++ A + +LVLDE D++L F + +
Sbjct: 114 SINKQQLQLEKGT-DILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRK 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I V A+RQT++ SAT+P ++ + S+ DP+ V+
Sbjct: 173 ISRMVP-----------------AKRQTLLFSATMPKAIADLSHSYLTDPVKVEV----- 210
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
T PG K AD+ ++ + V K D L++ ++
Sbjct: 211 ------TPPG-----------------KAADK----VEQYVHFVAGKNDKTDLLKKSLNE 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F+ T+ + ++K LE G K A +HG+ + R LK FK+G+++VLV
Sbjct: 244 NPDGRAIVFLR-TKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGDIKVLVA 302
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ V N DLP Y HR GRT R GR G ++ C E ++ ++
Sbjct: 303 TDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDIE 362
Query: 530 K--QLAVPIQACEFTEG 544
K ++ +P+ + E G
Sbjct: 363 KLMKIDIPVASGERPAG 379
>gi|345874413|ref|ZP_08826227.1| ATP-dependent RNA helicase [Neisseria weaveri LMG 5135]
gi|417957560|ref|ZP_12600481.1| ATP-dependent RNA helicase [Neisseria weaveri ATCC 51223]
gi|343968096|gb|EGV36329.1| ATP-dependent RNA helicase [Neisseria weaveri ATCC 51223]
gi|343970686|gb|EGV38859.1| ATP-dependent RNA helicase [Neisseria weaveri LMG 5135]
Length = 453
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 208/435 (47%), Gaps = 58/435 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL ++ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP L
Sbjct: 2 NPFASLGLGNEIVSALSEQGYEQPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ + S+ S + +++ P+REL QI + I+ + + L GG
Sbjct: 62 ERLKRYANAST-----SPAMHPVRMLVLTPTRELADQIDQNIRSYIKNLPLRHTV-LFGG 115
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N Q + LR IVV T GR+ + ++ + +VLDE D +L F + +
Sbjct: 116 VNMDNQTKELRSG-CEIVVATVGRLLDHIKQKNINLNKVEIVVLDEADRMLDMGFIDDIR 174
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ + PK +RQT++ SAT + + A+ + H P V+
Sbjct: 175 KIMQML----------PK-------QRQTLLFSATFAPPIRKLAQDFMHSPEQVEVA--- 214
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ +++N+N++ +H V ++ K L R +
Sbjct: 215 -----------------AQNTTNANVE------------QHIIAVDTMR-KRSLLERLIL 244
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
LD VI F + ++ L+ R + A +HGD + R TL FK G++RVLV
Sbjct: 245 DLDISQVIVFCKTKQSVEHVTRDLQRRNISAQAIHGDKSQQLRLETLNAFKEGKLRVLVA 304
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+AE V+N +LPT Y HR GRTGR G G +S+ +E E + + +Q
Sbjct: 305 TDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGIAISLMDETEQKMFESIQ 364
Query: 530 KQLAVPIQACEFTEG 544
+ + +Q E EG
Sbjct: 365 ELIGKSLQ-IERIEG 378
>gi|453082962|gb|EMF11008.1| ATP-dependent rRNA helicase RRP3 [Mycosphaerella populorum SO2202]
Length = 516
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 196/423 (46%), Gaps = 65/423 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELG+ L + G+ PT +Q +IP L+ DV+ + TGSGKT A+ LPIL
Sbjct: 89 TFAELGVREELCDACISLGYKTPTAIQRESIPIALQGKDVIGLAETGSGKTAAFALPILQ 148
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L +K + G +++AP+REL QI ++ + L G +VGG
Sbjct: 149 ---ALLEKQDHYFG----------LVLAPTRELAYQISQQFEAL-GSLINVKCAVIVGGM 194
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ + Q+ AL K KP I+V TPGR+ + + ++LV+DE D LL +F +
Sbjct: 195 DMTPQQIALAK-KPHIIVATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDLDFGPILD 253
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ + R ER+T++ SAT+ + R+ P+ V
Sbjct: 254 KILQVLPR-----------------ERRTMLFSATMSTKLDNLTRAALQSPVRVS----- 291
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+S SS + KQ+ +P K Y V V+
Sbjct: 292 ----------------ISSSSYQTVKNLKQSYIFIPHKFKDIYLVY-----------LVN 324
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
QT I F + F L A G A LHG L + AR L KF+ G +LV
Sbjct: 325 EFAGQTCIIFTRTINETARIAFLLRALGRSAIPLHGQLNQSARLGALNKFRGGSRDILVA 384
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ DLV+N DLP DS Y HR GRT R G+ G +SI + +V V ++++
Sbjct: 385 TDVAARGLDIPSVDLVLNYDLPPDSKTYVHRVGRTARAGKAGVAISIVTQYDVEVYQRIE 444
Query: 530 KQL 532
K L
Sbjct: 445 KAL 447
>gi|427414454|ref|ZP_18904644.1| hypothetical protein HMPREF9282_02051 [Veillonella ratti
ACS-216-V-Col6b]
gi|425714414|gb|EKU77419.1| hypothetical protein HMPREF9282_02051 [Veillonella ratti
ACS-216-V-Col6b]
Length = 420
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 202/422 (47%), Gaps = 65/422 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ P L+E L ++G PT +Q AIP K +D++ + TG+GKTLA+LLP+L
Sbjct: 3 SFQTLGVVPELIESLAKQGIKEPTPIQEQAIPPAFKGNDLIAMAQTGTGKTLAFLLPVLQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+V N E ++ +A+I+AP+REL QI E K +G + L+GG
Sbjct: 63 RV----------NVEVFQE---QALIIAPTRELVKQIADE-GKAIGDILGVDILPLIGGR 108
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F +
Sbjct: 109 TIEGQLQQLGR-RPHVILGTPGRLLDHATRGSLHLDTVRRVVLDEADQMLHMGFLPDVES 167
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++E ++ AN RQ ++ SATVP + A+++
Sbjct: 168 LIE----KTNAN-------------RQLLLFSATVPDRIRSLAKTY-------------- 196
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PMS + +N+ +Q + + K + K+D L +
Sbjct: 197 -----------MKKPMSVTVKGNNVTLDTIEQKV--------IMVKPEEKLDRLMAQLRE 237
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ I F N ++L A G ELHGDL + R+ L+ F ++LV
Sbjct: 238 DNPYLAIVFCNKKEGAIKLSYELTAAGFNIGELHGDLTQGRRTQILRDFARARTQILVAT 297
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ V N D+P D +Y HR GRTGR G G ++ + + ++++++
Sbjct: 298 DIAARGIDIEGISHVYNYDVPHDVDYYIHRIGRTGRAGTNGIAITYATQADEPWLRRIER 357
Query: 531 QL 532
+
Sbjct: 358 AI 359
>gi|197123442|ref|YP_002135393.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
gi|196173291|gb|ACG74264.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
Length = 478
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 210/438 (47%), Gaps = 62/438 (14%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P + +F +L L L+ LER GF PT +Q+ AIP L DV+ + TG+GKT A+L
Sbjct: 3 PRLSPTFADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFL 62
Query: 166 LPILSKV--GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL-LGPSDKKA 222
LPI+ ++ G KD+ + +G+ G + A+++AP+REL +QI E+++ G + A
Sbjct: 63 LPIIERLAGGAPKDRPAAAHGKPGPR----ALVLAPTRELAVQIAGELERFGRGRHVRGA 118
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
+ ++GG Q ALR ++ ++V TPGR+ + G G LVLDE D +L
Sbjct: 119 L--VIGGVGMGAQSAALRDHE--VIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDM 174
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + RI+ V PK RQT++ SAT+ V AR+ DP+
Sbjct: 175 GFAPQLKRILARV----------PKV-------RQTLLFSATMAGEVADFARAHLRDPVR 217
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V+ + S A++A+Q + + + + K+
Sbjct: 218 VEV-------------------------ARSGTLAERAEQRV--------FLPEQREKLP 244
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L + D T++ F R+ L+ G K A +H D + R L+ F++G
Sbjct: 245 LLLALLEEDDLSTLV-FTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDG 303
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+ RVLV +++ARG+DVAE VVN DLP Y HR GRT R+ G + E+
Sbjct: 304 QYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEEL 363
Query: 523 FVVKKMQKQLAVPIQACE 540
+++ +++ PI E
Sbjct: 364 DLLRDIERLTRAPIPRAE 381
>gi|402219014|gb|EJT99089.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 658
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 193/410 (47%), Gaps = 50/410 (12%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L + P LLE L F+ PT +Q+ A P++L+ DV+ + TGSGKTLA+ +P L
Sbjct: 231 TFSQLPVHPTLLEHLLSLKFSQPTPIQACAWPALLEGRDVIGIAETGSGKTLAFGVPAL- 289
Query: 171 KVGPLKDKSSNGNGESGK----KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
+S N +GK K I+ ++VAP+REL +Q + L P +V L
Sbjct: 290 -------QSLVSNTPAGKPSKSKPSIKVLVVAPTRELALQTHDTLSSLSAPFKLLSVP-L 341
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + Q +AL + A+VVGTPGR+ + + G+L G +LVLDE D +L F
Sbjct: 342 YGGVPKPPQLQALAQPGAAVVVGTPGRVLDFARTGELDLSGVGYLVLDEADRMLDRGFEP 401
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ IV L R RQT M SAT P SV R A S+ DP +
Sbjct: 402 DIREIV----------------GLTKREGRQTAMFSATWPESVRRLAASFQRDPFRI--- 442
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
G +LS +N + Q+ + L + + L ++ R+
Sbjct: 443 ---------TVGAEDLS---------ANKRVAQSVEVLSSSYDKDARLRSLLQSLNHSRQ 484
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ + + F+ ++ L G A +HGD+G+ AR L +FK G V++
Sbjct: 485 GGKKAEQERTLIFVLYKKEATRVEQSLSRMGYHVAAIHGDMGQQARIAALDEFKQGRVKL 544
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
LV +++ARGLD+ V+N P Y HR GRTGR G G ++
Sbjct: 545 LVATDVAARGLDIPAVGTVLNYSFPLTIEDYIHRIGRTGRGGASGKSITF 594
>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
corporis]
gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
corporis]
Length = 449
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/414 (26%), Positives = 197/414 (47%), Gaps = 64/414 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
++F ++GL LL + GF P+ +Q AI +K HDV Q+ +G+GKT + +
Sbjct: 74 VVDNFDDMGLKEELLRGIYAYGFEKPSAIQQRAIMPCIKGHDVTAQAQSGTGKTATFSIS 133
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL ++ D S N + +A+I+AP+REL QI +++ LG +
Sbjct: 134 ILQQI----DTSIN---------ECQALILAPTRELAQQI-QKVVIALGDFMNAMCHACI 179
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG N R++ ++ +VVGTPGR+ ++ L T + VLDE DE+LS F++
Sbjct: 180 GGTN-VREDMRKLEHGVHVVVGTPGRVYDMINRRCLRTDRIKIFVLDEADEMLSRGFKDQ 238
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+H + + + + Q I++SAT+P V+ ++ + +P+
Sbjct: 239 IHDVFQ-----------------TLDVDVQVILLSATMPHDVLEVSKKFMRNPI------ 275
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
N+ ++ + +L + Y V + + K +TL
Sbjct: 276 --------------------------NILVQKDELTLEGIKQFYISVEREEWKFETLCDL 309
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
L + F N R++ + + + +HGD+ + R +++F++G RVL
Sbjct: 310 YETLTITQAVIFCNTRRKVDMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRVL 369
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+T +L ARG+DV + LV+N DLP++ +Y HR GR+GR GR+G ++ E +
Sbjct: 370 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQD 423
>gi|422439272|ref|ZP_16516095.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|422470759|ref|ZP_16547259.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
Length = 536
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/432 (29%), Positives = 211/432 (48%), Gaps = 57/432 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF +LG+ + + LE G P +Q+ +IP ++ D++ Q+ TG+GKTLA+ + IL
Sbjct: 33 TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 92
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ D+ G E K +A+++ P+REL +Q+ + I + V + GG
Sbjct: 93 QRITLPGDE---GWEELTTKGKPQALVMCPTRELALQVSQNISTAASVRGAR-VLTVYGG 148
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q +AL+ +VVGTPGR+ ++S L +VLDE DE+L F +
Sbjct: 149 VGYEPQIDALQAGVD-VVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVE 207
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++ G P RQT++ SAT+P ++ ARS + P+ V+A+
Sbjct: 208 NLI-------GRTP----------TPRQTMLFSATMPAPIMALARSQLNRPVHVRAEG-- 248
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
++ QA ++P + Y L K++ + R +
Sbjct: 249 -----------------------ADTQA-----TVPDTQQFVYQAHPLD-KIEIIGRILQ 279
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A DA+ VI F R + L RG KA +HGDL ++AR LK+F++G+V +LV
Sbjct: 280 ANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVTILVA 339
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV----FVV 525
+++ARG+DV V+N + P D Y HR GRTGR G +G V++ + +V +
Sbjct: 340 TDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADVTRWKLID 399
Query: 526 KKMQKQLAVPIQ 537
K + +L+ P++
Sbjct: 400 KALNLELSEPVE 411
>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 466
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 206/426 (48%), Gaps = 60/426 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + GL P +L + +G+ PT +Q+ AIP+++K HD++ + TG+GKT A++LP++ +
Sbjct: 21 FTDFGLNPSILTAISEQGYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLPLVHQ 80
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
L ++ G S + A+I+AP+REL QI ++K + K + GG
Sbjct: 81 ---LLAENKQAPGRSCR-----ALILAPTRELAAQIEEQVKAYTAHT-KLTSTVVFGGVK 131
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q +AL + I+V TPGR+ + K RF++LDE D++L F A+ ++
Sbjct: 132 AGPQIKALARGVD-ILVATPGRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKL 190
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ VG ERQT+M SAT+ ++ + A + P
Sbjct: 191 LRMVGE-----------------ERQTLMFSATMAPAIRQLADDFLDHP----------- 222
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E++ T P S P+ ++ DQ K +Y T+ K D L +
Sbjct: 223 ETVAVTPP---SKPV-----------ERIDQ------KVFY--TEASAKPDALIDLMAPE 260
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ I F +L G KA +HGD + R+ L FK+GE VLV +
Sbjct: 261 AGKRAIIFTRTKYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGEAPVLVATD 320
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARG+DV DLVVN +LP + +Y HR GRT R G G V++C E ++K ++K
Sbjct: 321 IAARGIDVDGVDLVVNYELPNVAENYVHRIGRTARAGASGRAVALCAPDERVMLKDIEKT 380
Query: 532 LAVPIQ 537
+ V IQ
Sbjct: 381 MGVTIQ 386
>gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like protein [Rhodopseudomonas palustris
BisB5]
gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
Length = 500
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 191/410 (46%), Gaps = 65/410 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q+ + K G K V L+G
Sbjct: 62 ML------------EKGRARARMPRTLILEPTRELAAQVKEQFDK-YGAGQKLTVALLIG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q+ L + +++ TPGR+ + + G L G LV+DE D +L F +
Sbjct: 109 GVSFGDQDVKLTRGV-DVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
R+ + V P + RQT+ +AT+P + R ++ H+P ++
Sbjct: 168 ERVCKLV----------PFT-------RQTLFFTATMPPEIRRITETFLHNPEKIE---- 206
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+S P S + + + Q C + K +TLRR +
Sbjct: 207 -------------VSKPASTAVTVTQSQVP--------------CGREPHEKRETLRRLI 239
Query: 409 H-ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
A D Q I F N R++ L+ G LHGD+ + AR+ L +F+ GE+ +L
Sbjct: 240 RAATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPIL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
V ++++ARGLD+ E V N D+P Y HR GRTGR GR GT +SI
Sbjct: 300 VASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIV 349
>gi|385261982|ref|ZP_10040097.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
gi|385191723|gb|EIF39135.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
Length = 447
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 123/423 (29%), Positives = 206/423 (48%), Gaps = 68/423 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF + + E LE F PTEVQ IP +L D+V +S TGSGKT +LLPI
Sbjct: 2 SFSKFQFKNYINEALEELKFITPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA-VQQLVGG 229
++ D+SS+ ++AVI APSREL QI + +++ S+ + V VGG
Sbjct: 62 QL----DESSDS---------VQAVITAPSRELATQIYQAARQIASHSEVEVRVVNYVGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+++RQ + L N+P IV+GTPGRI ++ +G L H + V+DE D L F E +
Sbjct: 109 TDKARQIDKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVD 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL--VQAKN 347
+I +G+ P+ + Q ++ SAT+P + + + +P++ ++ K
Sbjct: 169 KI-------AGSLPK----------DLQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKT 211
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
VI S + N + K D++ H Y +T+L
Sbjct: 212 VI-----------------SDTIDNWLISTKGRDKN-----AHIYQLTQL---------- 239
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + F+N + + L A+G+K A++HGD+ R + + KN + +
Sbjct: 240 ---MQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYI 296
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +L+ARG+D+ V+N +P D + HR GRTGR G GT +++ + + +++
Sbjct: 297 VATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRE 356
Query: 528 MQK 530
++K
Sbjct: 357 LEK 359
>gi|401400548|ref|XP_003880804.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
gi|325115216|emb|CBZ50771.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
Length = 462
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 209/452 (46%), Gaps = 66/452 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGL L + G+ PT +QS +P L+ D++ + TGSGKT A+ LPIL
Sbjct: 34 TFSSLGLCAELCASVSTLGWRAPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQ 93
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ + A+I+AP+REL +QI +++ + G S V LVGG
Sbjct: 94 QL-------------LQRTQRFYALILAPTRELCLQISQQMLAM-GGSLGVTVVTLVGGL 139
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ + Q AL K KP +VVG+PGR+ + + + LVLDE D LLS +F A+
Sbjct: 140 DHNTQAIALAK-KPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQ 198
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++EHVG +P AERQT++ SAT+ V + ++ P+ ++ +
Sbjct: 199 VLLEHVG-----SP----------AERQTMLFSATMTTKVSKLQKASLKKPVKLEVNSKY 243
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ S+ +Q +P LKH + L H
Sbjct: 244 DVASL----------------------LQQHFLLVPFKLKHTHLAAALLH---------- 271
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L +VI F N + L G ++ LHG + + R L KF+ E LV
Sbjct: 272 -LSPSSVIVFTNTCANARTIALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVA 330
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
E+ +RGLD+ +V+N D+P S Y HR GRT R GR G ++I + +V ++++
Sbjct: 331 TEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIE 390
Query: 530 KQLAVPI-QACEFTEGRLVIGKEEEKTLEAVR 560
L + + E T V+ EK LEA+R
Sbjct: 391 HALGQKLDELTELTATEKVM-PLHEKVLEALR 421
>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
Length = 505
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/430 (27%), Positives = 200/430 (46%), Gaps = 61/430 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ ++ L+ +G +Q +P L D++ Q+ TG GKT A+ +P+L +
Sbjct: 12 FAQLGVRDEIVRALDEKGIQHSFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK-AVQQL 226
+ + G A++V P+REL +Q+ ++ K L + +V +
Sbjct: 72 I-------TAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPI 124
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q +ALR +VVGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 125 YGGRPYEPQIDALRAGA-DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLP 183
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ + P +RQ+++ SAT+P +I AR++ + P ++A+
Sbjct: 184 DIERILRQI----------PD-------DRQSMLFSATMPDPIITLARTFMNQPTHIRAE 226
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
P S ++ ++ +Q Y KV+ + R
Sbjct: 227 -----------------APHSAATHDTTVQ--------------YVYRAHALDKVELVSR 255
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R + +L RG K +HGDLG++AR LK F+ G++ V
Sbjct: 256 VLQAESRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDV 315
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 316 LVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVDWDELARWA 375
Query: 527 KMQKQLAVPI 536
+ K L + +
Sbjct: 376 LIDKALGLDV 385
>gi|392981865|ref|YP_006480452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa DK2]
gi|419755935|ref|ZP_14282287.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa
PADK2_CF510]
gi|384397597|gb|EIE44008.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa
PADK2_CF510]
gi|392317370|gb|AFM62750.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa DK2]
Length = 458
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 205/426 (48%), Gaps = 68/426 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ +F L L LL L+ G+ T +Q+ ++P IL+ HD++ Q+ TGSGKT A+ L +
Sbjct: 3 STAFSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLAL 62
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
LS + P + +A+++ P+REL Q+ +EI++L +D V L G
Sbjct: 63 LSPLNP-------------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q +L ++ +VVGTPGRI E G L G LVLDE D +L F +++
Sbjct: 110 GVPYGPQVASL-EHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ + R RQT++ SAT P S+ + A+++ DP V+ +++
Sbjct: 169 AEIIGQLPER-----------------RQTLLFSATYPDSIEKLAKTFMRDPRQVRVESL 211
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+++ Q +Q + P + ++D + R +
Sbjct: 212 -----------------------HADSQIEQRFFEIDP-----------KQRMDAVVRLL 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
Q+ +AF +Q ++ L+A+ + A LHGDL + R L F N VLV
Sbjct: 238 QHFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI---CEEPEVFVV 525
+++ARGLD+A + V+N++L D + HR GR+GR G +G +S+ E +
Sbjct: 298 ATDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAI 357
Query: 526 KKMQKQ 531
+ +QKQ
Sbjct: 358 EDLQKQ 363
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 202/424 (47%), Gaps = 57/424 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F GL P +L L +G+ PT +Q+ AIP +L DV+ + TG+GKT + LPI+
Sbjct: 20 TFDSFGLDPRVLRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 79
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ PL + S+ S + + A+++ P+REL Q+ + + +D ++ + GG
Sbjct: 80 RLLPLANASA-----SPARHPVRALMLTPTRELADQVYDNVARYARHTDLRSTV-VFGGV 133
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ + Q +ALR+ I+V TPGR+ + ++ + LVLDE D +L F + R
Sbjct: 134 DMNPQTDALRRGV-EILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQR 192
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + A+RQT++ SAT + + A S+ H P+ ++
Sbjct: 193 IIN-----------------LLPAKRQTLLFSATFSPEIKKLAASYLHQPVTIEV----- 230
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT--LRRCV 408
S+++N +Q + K V L+ + D R+C
Sbjct: 231 -----------------ARSNSANENVRQTVYQVQDGQKQEAVVHLLKQRADQGLSRQC- 272
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
I F+N+ LE G+ AA +HGD + R TL+ FK G + LV
Sbjct: 273 --------IVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKQGTIDALV 324
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+A+ V+N DLP ++ Y HR GRTGR G G +SI + ++ +
Sbjct: 325 ATDVAARGLDIADMPCVINFDLPFNAEDYVHRIGRTGRAGATGDALSIFVPGDERLLADI 384
Query: 529 QKQL 532
+K L
Sbjct: 385 EKML 388
>gi|356522500|ref|XP_003529884.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Glycine
max]
Length = 507
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 123/420 (29%), Positives = 194/420 (46%), Gaps = 64/420 (15%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E P SF + G P ++E + + GF PT +QS P LK D++ + TGS
Sbjct: 90 TVEGRDIPKPVKSFHDAGFPEYVMEEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGS 149
Query: 159 GKTLAYLLPILSKVG--PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216
GKTLAYLLP + V P+ + G+G +++AP+REL +QI +E K G
Sbjct: 150 GKTLAYLLPSIVHVNAQPILNP---GDGPI-------VLVLAPTRELAVQIQQEATKF-G 198
Query: 217 PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276
S + + GG + Q L+K IV+ TPGR+ ++ + + +LVLDE
Sbjct: 199 ASSRIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMLESNHTNLQRVTYLVLDEA 257
Query: 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
D +L F + +IV + R +RQT+ SAT P V + AR +
Sbjct: 258 DRMLDMGFDPQLRKIVSQI-----------------RPDRQTLYWSATWPKEVEQLARKF 300
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
++P V + GSS +L+A A ++ Y +
Sbjct: 301 LYNPYKV----------------------IIGSS---DLKANHA-------IRQYVDIVS 328
Query: 397 LQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455
+ K D L + + +D ++ FM+ + +L G A +HGD + R
Sbjct: 329 EKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWV 388
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
L +FK+G+ ++ +++ARGLDV + V+N D P Y HR GRTGR G +GT +
Sbjct: 389 LSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 448
>gi|414343394|ref|YP_006984915.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
gi|411028729|gb|AFW01984.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
Length = 572
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 134/499 (26%), Positives = 225/499 (45%), Gaps = 67/499 (13%)
Query: 61 PTNKNKSNKPKKHS-PIEI----PKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLEL 115
P ++ +P+K+ P+E+ P +V A+ K + E F +L
Sbjct: 10 PKPPSRRGRPRKNPLPVEVHVEAPATEVAAIVEVETKTTEAPVAPETSETSADQPRFADL 69
Query: 116 GLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPL 175
GL ++ ++ G+ PT +Q+ AIP +LK HDV+ + TG+GKT ++ LP+L K+
Sbjct: 70 GLAEPIMRAIQELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLEKL--- 126
Query: 176 KDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQ 235
+G + ++I+ P+REL +Q+ K L G + L+GG + + Q
Sbjct: 127 -------SGSRARARMPRSLILEPTRELALQVADNFK-LYGKYLRLTHALLIGGESMAEQ 178
Query: 236 EEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295
E L + +++ TPGR+ ++ G + LV+DE D +L F + +IV +
Sbjct: 179 REVLNRGV-DVLIATPGRLLDLFGRGGILLTQTSTLVIDEADRMLDMGFIPDIEKIVSLL 237
Query: 296 GRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMP 355
R RQT+ SAT+ + R A ++
Sbjct: 238 PR-----------------NRQTLFFSATMAPEIRRLADAF------------------- 261
Query: 356 ATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQT 415
LS P+ + S + A ++ L V + K LR+ + + D Q+
Sbjct: 262 ------LSNPVQITVSRPSSVATTIEEGL--------IVVEEDEKRRALRKLLRSQDVQS 307
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
I F N R + L G A LHGDL + R +TL FK+GE+++LV ++++AR
Sbjct: 308 AIVFCNRKRDVDMLQRYLTKHGFAAGHLHGDLAQSLRFSTLDSFKSGELKILVCSDVAAR 367
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVP 535
G+D+ V N DLP ++ Y HR GRTGR G+ G SI + +++ ++
Sbjct: 368 GIDIGGLSHVFNFDLPFNAEDYVHRIGRTGRAGKHGHAFSIAGPRDRRLLEAIETLTGKV 427
Query: 536 IQACEFTEGRLVIGKEEEK 554
I EF E V +E++
Sbjct: 428 IARLEFPEIHSVDWAQEDE 446
>gi|421075784|ref|ZP_15536790.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392526099|gb|EIW49219.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 447
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 210/441 (47%), Gaps = 73/441 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
F LG+ + L G PTE+Q AIP+I+ DVV QS TG+GKTLA++LPIL
Sbjct: 4 DFTALGIRREIGAILAENGITKPTEIQVQAIPAIMSGKDVVGQSQTGTGKTLAFILPILE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VG 228
K+ K ++A+I+ P+REL +QI RE+ KL +D+ +Q L G
Sbjct: 64 KI-------------EISKPIVQALIITPTRELALQITREVAKL---ADQLGIQVLSVYG 107
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ + L K IV+GTPGR+ + + LVLDE D++L F E +
Sbjct: 108 GQDVDRQIKKL-KGGAQIVIGTPGRLMDHLRRETIQLENVTKLVLDEADQMLHMGFLEDV 166
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL--LVQAK 346
+V R +N +RQT++ SAT+P + A + PL +Q K
Sbjct: 167 EELV-----RQTSN------------KRQTMLFSATMPSKIRGLADRYMRKPLDIRIQTK 209
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N I L+ + KQ +P + K + KL +D R
Sbjct: 210 N-ITLDEI-----------------------KQIMVEVPESEK----IAKLSSMIDEYRP 241
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ I F + ++ L +G + ELHG+L + R +K+F+ ++++
Sbjct: 242 YL-------AIVFCHTKKRAIAVNMALSQKGYETDELHGELSQPKREQVMKRFREAKIQI 294
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLDV + N D+P D Y HR GRTGR G+ G +++ + E V+
Sbjct: 295 LVATDIAARGLDVEGVTHIFNYDIPHDVDSYIHRIGRTGRAGQAGMAITLIDPHEQPYVR 354
Query: 527 KMQKQLAVPIQACEFTEGRLV 547
+++ + I+ + + ++V
Sbjct: 355 LIEQGIRAAIEKHKVNDQKVV 375
>gi|336451455|ref|ZP_08621893.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
gi|336281826|gb|EGN75098.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
Length = 422
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 133/437 (30%), Positives = 204/437 (46%), Gaps = 66/437 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +LE L+ EG+ PT +Q AIP++L DV+ + TG+GKT + LP+L
Sbjct: 2 SFASLGLCATILEALQAEGYTTPTPIQEQAIPAVLARRDVMAAAQTGTGKTAGFTLPMLE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL-GPSDKKAVQQLVGG 229
LKD GE K + +I+ P+REL Q+ ++ G AV + GG
Sbjct: 62 I---LKD------GERAKPNEARVLILTPTRELAAQVGESVETYAKGLKLSSAV--VFGG 110
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ Q LR+ I+V TPGR+ ++ + LVLDE D +L F +
Sbjct: 111 VKINPQMMKLRRGVD-ILVATPGRLLDLYQQNAVRFPKLEILVLDEADRMLDMGFIHDIK 169
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI++ A+ A RQ ++ SAT + A+ +DP+ +
Sbjct: 170 RIIK-----------------ALPANRQNLLFSATFSDEIRDLAKGLVNDPVEI------ 206
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
S S N A++ +Q + P LK K + L +
Sbjct: 207 -------------------SVSPRNTTAERVEQVIYPVLKA--------DKPNMLMALLR 239
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
LD V+ F V +L+ G A +HG+ + AR+ L +FK G+V++LV
Sbjct: 240 QLDLPQVLVFSRTKHGANRLVKQLDKGGFLATAIHGNKSQGARTKALHEFKTGKVQILVA 299
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ + VVN DLP + Y HR GRTGR G G +S+ E EV ++K ++
Sbjct: 300 TDIAARGLDIDQLPFVVNYDLPQVAEDYVHRIGRTGRAGASGNAISLVEGDEVKLLKAVE 359
Query: 530 KQLA--VPIQACE-FTE 543
+ + +P Q E FT+
Sbjct: 360 RLIKQDIPQQYMEGFTK 376
>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
Length = 461
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 198/437 (45%), Gaps = 66/437 (15%)
Query: 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAY 164
A F+ N L++ LP L L GF T +Q+ +PSIL ++D++ Q+ TGSGKTLA+
Sbjct: 2 ANFSHN--LDIQLPTKLTALLSDLGFETFTPIQAQTLPSILSDNDILAQAQTGSGKTLAF 59
Query: 165 LLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224
+ +L K+ P + ++ +++ P+REL Q+ +EI+K + V
Sbjct: 60 AIGMLMKINP-------------RYFGVQGLVMCPTRELADQVCKEIRKTARFLENIKVL 106
Query: 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
L GG Q +L ++ IVVGTPGR+ E G L LVLDE D +L F
Sbjct: 107 SLCGGMPFGPQIGSL-EHGAHIVVGTPGRLLEHVRKGTLRLDSLNTLVLDEADRMLDMGF 165
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+++ +VE PK +RQT+M SAT P ++ + + + H+P ++
Sbjct: 166 VDSIRTLVEST----------PK-------KRQTLMFSATYPETIGKISAEFQHNPKTIK 208
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
+A Q P +K ++ + K L
Sbjct: 209 V---------------------------------EATQESKPDIKQFFVKSNKDDKPYAL 235
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
V + + I F N + + L + A +HGDL + R L +F N
Sbjct: 236 MSAVRYQNPEQAIVFCNTKIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNASC 295
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
R+LV +++ARG+DV E D V+N D D + HR GRTGR G +G +++ + + +
Sbjct: 296 RILVATDVAARGIDVKEVDTVINYDTTRDIDVHTHRIGRTGRAGNKGVAINLVTDKDTYK 355
Query: 525 VKKMQKQLAVPIQACEF 541
VK ++ + + E
Sbjct: 356 VKDIEDRFEIQADYLEL 372
>gi|330999043|ref|ZP_08322768.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
11859]
gi|329575785|gb|EGG57311.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
11859]
Length = 586
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 198/424 (46%), Gaps = 60/424 (14%)
Query: 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166
+AN FLELGL L+ L GF PT +Q+ AIP +L+ DV+ Q+ TG+GKT A+ L
Sbjct: 1 MSANPFLELGLSEKLVNSLSSLGFEEPTPIQTKAIPVLLEGRDVLGQAATGTGKTAAFSL 60
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
P++ + + E GK + +I+ P+REL +Q+ I S V +
Sbjct: 61 PLIQRYCL--------DTEPGKP---QVLILTPTRELCIQVSEAINS-FARSSGVYVLPV 108
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + SRQ +AL + IVV TPGR + G L+ + +VLDE DE+L F E
Sbjct: 109 YGGQDYSRQIKALSRGV-QIVVATPGRALDHIRRGTLNLTEIKAVVLDEADEMLDMGFAE 167
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ I A+ +RQT + SAT+P + + A + HD +
Sbjct: 168 DLEAIFA-----------------ALPEKRQTALFSATLPPKIAKIAENHLHDAFHI--- 207
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+IP E +P + +Q P +K + HK L R
Sbjct: 208 -LIPKEKVP-----------------------EGEQ---PKVKQSAYIVGRNHKTAALGR 240
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ + I F ++ + L RG LHG L + R +K+ + +V V
Sbjct: 241 ILDIESPRLAIVFARTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDV 300
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
+V +++ARG+D+ V+N +P+ + Y HR GRTGR GR GT ++I E E ++K
Sbjct: 301 IVATDVAARGIDIDHLTHVINFGIPSSAETYVHRIGRTGRAGREGTAITILEPRESRLLK 360
Query: 527 KMQK 530
+++
Sbjct: 361 NIER 364
>gi|429195540|ref|ZP_19187565.1| ATP-dependent RNA helicase DeaD family protein [Streptomyces
ipomoeae 91-03]
gi|428668727|gb|EKX67725.1| ATP-dependent RNA helicase DeaD family protein [Streptomyces
ipomoeae 91-03]
Length = 916
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 195/410 (47%), Gaps = 51/410 (12%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F +LG+ P E LE G P +Q +P L DV+ Q+ TG+GKTL + LP+L
Sbjct: 32 TTFRDLGILPETAEALEAVGIINPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLL 91
Query: 170 SKVGPLKDKSSNGNGESGKKTDI-EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+V D + G + TD +A++V P+REL Q+ ++ G V + G
Sbjct: 92 ERVTVPADVEA-GRAKPEDLTDAPQALVVVPTRELCTQVTNDLL-TAGKVRNVRVTAIYG 149
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q EAL+K +V+GTPGR+ +++ KL + LVLDE DE+L F +
Sbjct: 150 GRAYEPQVEALKKGV-DVVIGTPGRLLDLAGQKKLDLKHVKCLVLDEADEMLDLGFLPDV 208
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I+ G P A RQT++ SAT+P +VI AR + P ++A
Sbjct: 209 EKII-------GMLP----------ARRQTMLFSATMPGAVIGLARRYMSQPTHIRA--- 248
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
T P + ++ +S +H Y + K + + R +
Sbjct: 249 --------TAPDDEGATVANTS------------------QHIYRAHNMD-KPEMVARIL 281
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A + F R D +L+ RG + +HGDLG+ AR L+ F+NG+V VLV
Sbjct: 282 QADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 341
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
+++ARG+DV V+N P D Y HR GRTGR G +G +++ +
Sbjct: 342 CTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGIAITLVD 391
>gi|335034320|ref|ZP_08527671.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
gi|333794285|gb|EGL65631.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
Length = 502
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 128/441 (29%), Positives = 215/441 (48%), Gaps = 63/441 (14%)
Query: 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166
+ SF ELGL ++ + + G+ PT +Q+ AIP +L+ D++ + TG+GKT A+ L
Sbjct: 11 YILTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGL 70
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
PI+ + D+ +N +I+AP+REL QI ++ + + + + Q+
Sbjct: 71 PIIEMLMKQADRPAN--------RTTRTLILAPTRELVNQIGDNLRSFVKKTPLR-INQV 121
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
VGGA+ ++Q+ L K I+V TPGR+ ++ A + +LVLDE D++L F
Sbjct: 122 VGGASINKQQLQLEKGT-DILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIH 180
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I V PK RQT++ SAT+P ++ A ++ DP+ V+
Sbjct: 181 DLRKISRMV---------PPK--------RQTLLFSATMPKAISELASNFLTDPIKVEV- 222
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
T PG K AD+ ++ + V K D L++
Sbjct: 223 ----------TPPG-----------------KAADK----VEQYVHFVAGKNDKTDLLKK 251
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
++ I F+ T+ + ++K LE G K A +HG+ + R LK FK+GE++
Sbjct: 252 SLNENPDGRSIVFLR-TKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIK 310
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ARG+D+ V N DLP Y HR GRT R GR G ++ C E ++
Sbjct: 311 VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLL 370
Query: 526 KKMQK--QLAVPIQACEFTEG 544
++K ++ +P+ + E G
Sbjct: 371 HDIEKLMKIDIPVASGERPAG 391
>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase [Thermodesulfobium narugense DSM 14796]
gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
DSM 14796]
Length = 531
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 197/429 (45%), Gaps = 67/429 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F E+ L + L+ GF P+E+Q IP +++ DV+ Q+ TG+GKT A+ +PI+ K
Sbjct: 7 FGEIELSKDTVLALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIVEK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
KD+ +++++ P+REL +Q+ EI K+ + V + GG +
Sbjct: 67 TT--KDRVP------------QSLVLTPTRELAIQVAEEISKISKYRGLRVVP-IYGGQS 111
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ +AL KN +++GTPGR+ + G L LVLDE DE+L F E + I
Sbjct: 112 IERQIKAL-KNGAQVIIGTPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETI 170
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + QT++ SAT+P DP++ K
Sbjct: 171 MKSIKNEN----------------IQTLLFSATMP------------DPIMALTKKY--- 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ P S S L DQ +YC K K++ L R +
Sbjct: 200 ----------MKNPKVVSISKEQLTVPLTDQ--------FYCEAK--DKLEALCRILETE 239
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D I F + + + V L RG A LHGDL + R +K F+ + VLV +
Sbjct: 240 DMDKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVATD 299
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+++ V+N D+P D Y HR GRTGR G+ G ++ E ++ ++K
Sbjct: 300 VAARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIEKV 359
Query: 532 LAVPIQACE 540
+ I+ E
Sbjct: 360 IRTTIKRKE 368
>gi|356526023|ref|XP_003531619.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Glycine
max]
Length = 507
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 123/420 (29%), Positives = 194/420 (46%), Gaps = 64/420 (15%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E P +F + G P +L+ + + GF PT +QS P LK D++ + TGS
Sbjct: 90 TVEGRDIPKPVKTFHDAGFPEYVLQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGS 149
Query: 159 GKTLAYLLPILSKVG--PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216
GKTLAYLLP + V P+ + G+G +++AP+REL +QI +E K G
Sbjct: 150 GKTLAYLLPAIVHVNAQPILNP---GDGPI-------VLVLAPTRELAVQIQQETTKF-G 198
Query: 217 PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276
S + + GG + Q L+K IV+ TPGR+ ++ + + +LVLDE
Sbjct: 199 ASSRIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMLESNHTNLQRVTYLVLDEA 257
Query: 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
D +L F + +IV + R +RQT+ SAT P V + AR +
Sbjct: 258 DRMLDMGFDPQLRKIVSQI-----------------RPDRQTLYWSATWPKEVEQLARKF 300
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
++P V + GSS +L+A A ++ Y +
Sbjct: 301 LYNPYKV----------------------IIGSS---DLKANHA-------IRQYVDIVS 328
Query: 397 LQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455
+ K D L + + +D ++ FM+ + +L G A +HGD + R
Sbjct: 329 EKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWV 388
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
L +FK+G+ ++ +++ARGLDV + VVN D P Y HR GRTGR G +GT +
Sbjct: 389 LSEFKSGKSPIMTATDVAARGLDVKDVKYVVNYDFPGSLEDYVHRIGRTGRAGAKGTAYT 448
>gi|86159377|ref|YP_466162.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775888|gb|ABC82725.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 487
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 135/458 (29%), Positives = 211/458 (46%), Gaps = 72/458 (15%)
Query: 86 VRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL 145
+R DG KA P + +F +L L L LER GF PT +Q+ AIP L
Sbjct: 1 MRGDGRKA----------MVPRLSPTFADLNLSEKTLHALERAGFEHPTPIQTQAIPPAL 50
Query: 146 KNHDVVIQSYTGSGKTLAYLLPILSKV--GPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203
DV+ + TG+GKT A+LLPI+ ++ KD+ + + G + A+++AP+REL
Sbjct: 51 AGRDVIGAAATGTGKTAAFLLPIIERLSGAATKDRPAAAHARPGPR----ALVLAPTREL 106
Query: 204 GMQIVREIKKL-LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK 262
+QI E+ + G + A+ ++GG Q ALR ++ ++V TPGR+ + G
Sbjct: 107 AVQIAGELDRFGRGRHVRGAL--VIGGVGMGAQSAALRDHE--VIVATPGRLVDHLQQGT 162
Query: 263 LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVS 322
G LVLDE D +L F + RI+ V PK RQT++ S
Sbjct: 163 ARLDGLEVLVLDEADRMLDMGFAPQLKRILARV----------PKV-------RQTLLFS 205
Query: 323 ATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ 382
AT+ V AR+ DP+ V+ + S A++A+Q
Sbjct: 206 ATMAGEVADFARAHLRDPVRVEV-------------------------ARSGTLAERAEQ 240
Query: 383 SLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAE 442
+ + + + K+ L + D T++ F R+ L+ G K A
Sbjct: 241 RV--------FLPEQREKLPLLMALLEDDDLSTLV-FTRTKRRADKVAKALQRAGHKVAR 291
Query: 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAG 502
+H D + R L+ F++G+ RVLV +++ARG+DVAE VVN DLP Y HR G
Sbjct: 292 IHADRSQAQRRMALEGFRDGQYRVLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVG 351
Query: 503 RTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE 540
RT R+ G + E+ +++ +++ PI E
Sbjct: 352 RTARMAASGRASAFVSPEELDLLRDIERLTRAPIPRAE 389
>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
Length = 470
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 199/422 (47%), Gaps = 66/422 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A+SF +LG+ + E E+ F+ PT++Q+ AIP L+ DV+ + TGSGKT A+ +PI
Sbjct: 24 ASSFSDLGVIEPICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGKTAAFSIPI 83
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L G + A I+AP+REL QI ++I+ LG + +VG
Sbjct: 84 L-------------QGLWDDPRPLFACILAPTRELSYQISQQIEA-LGATIGVRCATIVG 129
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
G + Q AL K +P ++V TPGR+ + + R+LV+DE D LL +F
Sbjct: 130 GMDMMTQSIALSK-RPHVIVATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPI 188
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++++++ PK ER+T++ SAT+ V + R+ +P+ ++
Sbjct: 189 IDKLLQNI----------PK-------ERRTMLFSATMTTKVAKLQRASLRNPVRIEIG- 230
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ S+ S LQ YY HK L
Sbjct: 231 -------------------TKYSTVSTLQ-------------QYYLFMPFAHKDTYLVHL 258
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ ++I F + L G A LHG L + AR L KFK G ++
Sbjct: 259 ANEQVGHSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSIM 318
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+ DLVVN D+PT S Y HR GRT R GR+G V++ + +V ++++
Sbjct: 319 VCTDVAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQYDVELLQR 378
Query: 528 MQ 529
++
Sbjct: 379 IE 380
>gi|381188482|ref|ZP_09896043.1| cold-shock DEAD-box protein A [Flavobacterium frigoris PS1]
gi|379649459|gb|EIA08033.1| cold-shock DEAD-box protein A [Flavobacterium frigoris PS1]
Length = 641
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 131/443 (29%), Positives = 209/443 (47%), Gaps = 78/443 (17%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPI 168
N F +LGL LL+ + GF PTEVQ AIP +L K+ D+V + TG+GKT A+ P+
Sbjct: 2 NKFEQLGLSESLLKAILDLGFENPTEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPV 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ K+ ++N N +A+I++P+REL +QI EIK V + G
Sbjct: 62 IQKI-----DANNRN--------TQALILSPTRELCLQITNEIKNYSKYEKGINVVAVYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ + Q +++ I+V TPGR+ ++ G ++ F +LDE DE+L+ F E +
Sbjct: 109 GASITDQARDIKRG-AQIIVATPGRMQDMINRGLVNISQINFCILDEADEMLNMGFYEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAK 346
I+ P E+ T + SAT+P V R + + DP + V AK
Sbjct: 168 VNILSTT----------PD-------EKNTWLFSATMPAEVARIGKQFMKDPIEITVGAK 210
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N SGS++ + H + + + + + L+R
Sbjct: 211 N-------------------SGSAT----------------VSHEFYLVNARDRYEALKR 235
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
A + F R + KL G AA LHGDL + R +K F+ ++++
Sbjct: 236 LADANPDIFSVVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQM 295
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV---- 522
LV +++ARG+DV VVN LP + Y HR+GRTGR G+ GT + I + E+
Sbjct: 296 LVATDVAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKIS 355
Query: 523 ---FVVKKMQKQLAVP--IQACE 540
++K+ ++ +P I+ CE
Sbjct: 356 SIERIIKQKFEEKTIPSGIEICE 378
>gi|392539750|ref|ZP_10286887.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 435
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 212/438 (48%), Gaps = 66/438 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
++F ELGL P L RL ++ PT +Q+ AIPS+L D++ + TGSGKT + LP+L
Sbjct: 8 STFNELGLIPELQARLTDLEYSQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPML 67
Query: 170 SKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
K+ K +S GN +G +I+ P+REL Q+ +K + A++ +
Sbjct: 68 QKLFLEQGAKKTASKGNFVTG-------LILVPTRELATQVADSVKSY-SANFNGAIKTV 119
Query: 227 --VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
GG + + Q +ALR I+V TPGR+ ++ ++ + LVLDE D +LS F
Sbjct: 120 AVFGGVSVNTQMQALRGGAD-IIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGF 178
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
E + ++ AL M A++QT++ SAT P V LL Q
Sbjct: 179 TEELAELL----------------AL-MPAKKQTMLFSATFPEQVT----------LLTQ 211
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
P+E +Q + D+S ++ + V K K L
Sbjct: 212 ELLTNPVE----------------------IQVQSKDES--TLVQRVFTVNK-GEKTTVL 246
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+ + + F+N + + V KLE RG+ A HGD G+ R+ ++KFK GE+
Sbjct: 247 AHLIKEHQWRQALIFVNAKKDCEHLVGKLEKRGINAQVFHGDKGQSERTRVIEKFKAGEI 306
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
VL+ +++ARGLD+A+ +V+N +LP Y HR GR+GR G G +S+ + +
Sbjct: 307 EVLIATDIAARGLDIAKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDFHH 366
Query: 525 VKKMQKQLAVPIQACEFT 542
K ++K+ + ++ E T
Sbjct: 367 FKIIEKKNKLRLEREEVT 384
>gi|453055083|gb|EMF02530.1| putative ATP-dependent RNA helicase [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 1029
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 194/403 (48%), Gaps = 50/403 (12%)
Query: 141 IPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI-EAVIVAP 199
+P L DV+ Q+ TG+GKTL + LP+L +V D + G + + TD +A++V P
Sbjct: 3 LPVALSGSDVIGQAKTGTGKTLGFGLPLLERVVVPADVEA-GRAKPEQLTDAPQALVVVP 61
Query: 200 SRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA 259
+REL Q+ ++ G VQ + GG Q EAL K +VVGTPGR+ +++
Sbjct: 62 TRELCQQVTNDLL-TAGKVRNVRVQAIYGGRAYEPQVEAL-KAGCDVVVGTPGRLLDLAG 119
Query: 260 AGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTI 319
KL + LVLDE DE+L F + RI+ + A+RQT+
Sbjct: 120 QKKLSLAHVKALVLDEADEMLDLGFLPDVERIITM-----------------LPAKRQTM 162
Query: 320 MVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQ 379
+ SAT+P +VI AR + P ++A T P + G +++N+
Sbjct: 163 LFSATMPGAVISLARRYMSQPTHIRA-----------TSPDD-----DGRQTHANI---- 202
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
+H + + K + + R + A + F R D +L RG
Sbjct: 203 --------AQHVFRAHNM-DKPEMVARILQAEGRDRAMIFCRTKRTAADISEQLTRRGFA 253
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
A +HGDLG+ AR L+ F+NG+V VLV +++ARG+DV VVN P D Y H
Sbjct: 254 AGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVDNVTHVVNYQTPEDEKTYLH 313
Query: 500 RAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFT 542
R GRTGR G+ GT V++ + +V K + K L +P E T
Sbjct: 314 RVGRTGRAGKSGTAVTLVDWDDVPRWKLINKALELPFDEPEET 356
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 195/416 (46%), Gaps = 57/416 (13%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
+ AP A +F GL P +L L +G+ PT +Q+ AIP +L DV+ + TG+GKT
Sbjct: 8 DQAPAAEQTFESFGLDPRVLRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTA 67
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
+ LPI+ ++ PL + S+ S + + A+++ P+REL Q+ + + +D ++
Sbjct: 68 GFALPIIQRLLPLANASA-----SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRS 122
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
+ GG + + Q +ALR+ I+V TPGR+ + ++ + LVLDE D +L
Sbjct: 123 T-VVFGGVDMNPQTDALRRGV-EILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDM 180
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + RI+ + A+RQT++ SAT + + A S+ P+
Sbjct: 181 GFLPDLQRIIN-----------------LLPAQRQTLLFSATFSPEIKKLASSYLKQPVT 223
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
++ S+++N +Q + K V L+ + +
Sbjct: 224 IEV----------------------ARSNSTNENVRQVVYQVQDGHKQAAVVHLLKQRAN 261
Query: 403 TL--RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
R+C I F+N+ LE G+ AA +HGD + R TL FK
Sbjct: 262 EQQSRQC---------IVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFK 312
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
NG + LV +++ARGLD+ V+N DLP + Y HR GRTGR G G +SI
Sbjct: 313 NGTIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSI 368
>gi|357040015|ref|ZP_09101805.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
gi|355356995|gb|EHG04774.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
Length = 482
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 193/413 (46%), Gaps = 69/413 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + GL +++ L GF T +Q AIP L+ D++ Q++TG+GKT A+ +P++
Sbjct: 4 FNDFGLTEPVIKALNNMGFEEATPIQERAIPVGLQGRDLIGQAHTGTGKTAAFGIPLMEI 63
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--VGG 229
+ ++ I+ V++ P+REL +Q+ E+ KL K ++ L GG
Sbjct: 64 L-------------QVRREYIQGVVLTPTRELAVQVAEELNKL---GQYKGIRTLPIYGG 107
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ +RQ AL+K +P I+VGTPGR+ + + + +VLDE DE+L+ F E +
Sbjct: 108 QDINRQIRALKK-RPHIIVGTPGRLMDHMRRKTIRLNQVSMVVLDEADEMLNMGFIEDIE 166
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I++ + AERQT++ SAT+P + A + + P VI
Sbjct: 167 NILKDIP-----------------AERQTMLFSATMPAPIRALAGRFMNTP------EVI 203
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ES T P ++ Y + K D L R +
Sbjct: 204 SVESRQVT---------------------------VPNIEQGYIEVHEKQKFDVLCRLLD 236
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
VI F R++ + L RG A +HGDL + R +++FK G + VLV
Sbjct: 237 TQSPDRVIIFGRTKRRVDELFEALNKRGYSAEGIHGDLSQARRDQVMRQFKEGAIEVLVA 296
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARGLD+ + N D+P D Y HR GRTGR G+ G +++ E+
Sbjct: 297 TDVAARGLDITGVTHIYNFDIPQDPEGYVHRVGRTGRAGKAGVAITLVTPREI 349
>gi|400535731|ref|ZP_10799267.1| rhlE [Mycobacterium colombiense CECT 3035]
gi|400330774|gb|EJO88271.1| rhlE [Mycobacterium colombiense CECT 3035]
Length = 518
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 192/421 (45%), Gaps = 66/421 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ ++ L +G P +Q +P L D++ Q+ TG GKT A+ +P+L +
Sbjct: 14 FAQLGVRDEIVRALAEKGIESPFAIQELTLPMALAGDDLIGQARTGMGKTFAFGVPLLQR 73
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI----KKLLGPSDKK------ 221
+ ++G A+IV P+REL +Q+ ++ K L D
Sbjct: 74 I-------TSGTAARPLNGTPRALIVVPTRELCLQVTDDLTLAAKYLSADKDDAGRDRAL 126
Query: 222 AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLS 281
+V + GG Q EALR +VVGTPGR+ ++S L G LVLDE DE+L
Sbjct: 127 SVVPIYGGRPYEPQIEALRAGAD-VVVGTPGRLLDLSQQNHLQLGGLSVLVLDEADEMLD 185
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
F + RI+ + +RQ+++ SAT+P +I AR++ + P
Sbjct: 186 LGFLPDIERILRQI-----------------PTDRQSMLFSATMPDPIITLARTFMNQPT 228
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
++A+ P S ++ ++ +Q Y KV
Sbjct: 229 HIRAE-----------------APHSAATHDTTVQ--------------YVYRAHALDKV 257
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
+ + R + A + F R + +L RG +HGDLG+ AR LK F+
Sbjct: 258 ELVSRVLQAEGRGATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQAAREKALKAFRT 317
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
G++ VLV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E
Sbjct: 318 GDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 377
Query: 522 V 522
+
Sbjct: 378 L 378
>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
Length = 502
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 128/441 (29%), Positives = 215/441 (48%), Gaps = 63/441 (14%)
Query: 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166
+ SF ELGL ++ + + G+ PT +Q+ AIP +L+ D++ + TG+GKT A+ L
Sbjct: 11 YILTSFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGL 70
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
PI+ + D+ +N +I+AP+REL QI ++ + + + + Q+
Sbjct: 71 PIIEMLMKQADRPAN--------RTTRTLILAPTRELVNQIGDNLRSFVKKTPLR-INQV 121
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
VGGA+ ++Q+ L K I+V TPGR+ ++ A + +LVLDE D++L F
Sbjct: 122 VGGASINKQQLQLEKGT-DILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIH 180
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I V PK RQT++ SAT+P ++ A ++ DP+ V+
Sbjct: 181 DLRKISRMV---------PPK--------RQTLLFSATMPKAISELASNFLTDPIKVEV- 222
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
T PG K AD+ ++ + V K D L++
Sbjct: 223 ----------TPPG-----------------KAADK----VEQYVHFVAGKNDKTDLLKK 251
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
++ I F+ T+ + ++K LE G K A +HG+ + R LK FK+GE++
Sbjct: 252 SLNENPDGRSIVFLR-TKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIK 310
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ARG+D+ V N DLP Y HR GRT R GR G ++ C E ++
Sbjct: 311 VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLL 370
Query: 526 KKMQK--QLAVPIQACEFTEG 544
++K ++ +P+ + E G
Sbjct: 371 HDIEKLMKIDIPVASGERPAG 391
>gi|90414183|ref|ZP_01222164.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
gi|90324733|gb|EAS41271.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
Length = 462
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 185/408 (45%), Gaps = 62/408 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL P LL++L GF+ TE+Q A+P + DV+ S TGSGKTLA+LLP + +
Sbjct: 18 FKDLGLDPRLLKKLTHLGFDRATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAMQR 77
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG--PSDKKAVQQLVGG 229
+ G+ + D +I+ P+REL Q+ +++ L P D + VGG
Sbjct: 78 MY---------RGKPFTRRDQRVLILTPTRELAKQVFAQLRTLNAGTPYDGALI---VGG 125
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N + Q + RK+ P VV TPGR A+ G L+LDE D +L F +
Sbjct: 126 ENFNDQVKEFRKD-PMFVVATPGRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLR 184
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI E LA RQT+M SAT+ ++VI
Sbjct: 185 RIHE----------------LANHRRRQTLMFSATM------------------DNEDVI 210
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ S P LS NSN + Q +Y L HK L + +
Sbjct: 211 EMASEMLNAPKRLS------VGNSNEEHTDITQ-------RFYLCDHLDHKQALLDKVLE 257
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
D VI F +L R +KA L G+L + R++ + +F+ ++LVT
Sbjct: 258 TEDYNQVIIFTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCHKILVT 317
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++++RGLD+ V+N D+P + Y HR GRTGR G +G +S+
Sbjct: 318 TDVASRGLDIDGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLV 365
>gi|87122371|ref|ZP_01078252.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Marinomonas sp. MED121]
gi|86162346|gb|EAQ63630.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Marinomonas sp. MED121]
Length = 432
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 213/436 (48%), Gaps = 68/436 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L LP LL+ + F +E+Q+A++P L+ +D++ Q+ TG+GKT A+L+ ++S
Sbjct: 55 FHDLNLPDRLLKSIAEMSFEYCSEIQAASLPETLQGYDLIGQAQTGTGKTAAFLIAMISD 114
Query: 172 V--GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
P++++ + +I+AP+REL +QI + KL SD V LVGG
Sbjct: 115 FIDYPIEEERDSRLAR--------GLIIAPTRELALQIAEDAVKLTVNSDINIVS-LVGG 165
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ +Q++ L + IVV TPGR+ + + K+ + LVLDE D +LS F +
Sbjct: 166 LSYEKQKQILENERVDIVVATPGRLMDFARNKKVLLNKVEALVLDEADRMLSMGFIPDVK 225
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ P + K RQT++ SAT P + AR W + P V +V+
Sbjct: 226 SIIR-------MTPHKEK--------RQTMLFSATFPKDIQNLARQWTYFPKEV---SVV 267
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQ----AKQADQSLPPALKHYYCVTKLQHKVDTLR 405
P E+ +N N++ + +ADQ P L
Sbjct: 268 PEET-----------------TNKNIEQVIYSVEADQKWP-----------------VLE 293
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ D Q I F N + +D +L+ G+ A L G++ + R TL FKNG+++
Sbjct: 294 SLIKEKDNQRTIVFANRRDETRDLYERLKDAGVNCAMLSGEVAQDKRVKTLANFKNGKIQ 353
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ RG+ V +LVVN LP D Y HR GRTGR G G VS E + F+V
Sbjct: 354 VLVATDVAGRGIHVDGIELVVNYSLPEDPEDYVHRIGRTGRGGETGKSVSFASEDDAFMV 413
Query: 526 KKMQKQLAVPIQACEF 541
+++K + I+ CE+
Sbjct: 414 PEIEKVVGEKIR-CEY 428
>gi|54302661|ref|YP_132654.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46916085|emb|CAG22854.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
Length = 474
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 185/408 (45%), Gaps = 62/408 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL P LL++L GF TE+Q A+P + DV+ S TGSGKTLA+LLP + +
Sbjct: 30 FKDLGLDPRLLKKLTHLGFERATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAMQR 89
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG--PSDKKAVQQLVGG 229
+ G+ + D +I+ P+REL Q+ +++ L P D + VGG
Sbjct: 90 MY---------RGKPFTRRDQRVLILTPTRELAKQVFAQLRTLNAGTPYDGALI---VGG 137
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N + Q + RK+ P VV TPGR A+ G L+LDE D +L F +
Sbjct: 138 ENFNDQVKEFRKD-PMFVVATPGRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLR 196
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI E LA RQT+M SAT+ ++VI
Sbjct: 197 RIHE----------------LANHRRRQTLMFSATM------------------DNEDVI 222
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ S P LS GSS+ + Q +Y L HK L + +
Sbjct: 223 EMASEMLNAPKRLS---IGSSNEEHTDITQ----------RFYLCDHLDHKQALLDKVLE 269
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
D VI F +L R +KA L G+L + R++ + +F+ ++LVT
Sbjct: 270 TEDYNQVIIFTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCHKILVT 329
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++++RGLD+ V+N D+P + Y HR GRTGR G +G +S+
Sbjct: 330 TDVASRGLDIEGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLV 377
>gi|148974049|ref|ZP_01811582.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
gi|145965746|gb|EDK30994.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
Length = 443
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 195/409 (47%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F TE+QS AIP + D++ S TGSGKTLA++LP++ K
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAMAGKDLLASSKTGSGKTLAFVLPMIHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK K+ + G VI+AP+REL Q+ E++ +LG +A ++GG N
Sbjct: 63 A--LKTKAFSARDPRG-------VILAPTRELAKQVYGELRSMLGGLSYEAA-LILGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALRK P +V TPGR+A+ L L+LDE D +L F + RI
Sbjct: 113 FNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDSVETLILDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT+ + + N I
Sbjct: 172 ANAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAN 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E + A P +S G S+ +L Q +Y L HK L R +
Sbjct: 200 EMLDA--PKRIS---VGVSNEQHLDITQK----------FYLCDHLDHKEAILDRVLEEA 244
Query: 412 DAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ + V+ F +T +L D KL + +KA L G+L + R+ + +F+ ++LV
Sbjct: 245 EYRQVMIFTATRADTDRLTD---KLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILV 301
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RG+D+ V+N D+P + Y HR GRTGR G +G +S+
Sbjct: 302 TTDVASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350
>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
Length = 696
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 138/468 (29%), Positives = 210/468 (44%), Gaps = 71/468 (15%)
Query: 58 EFEPTNKN-KSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELG 116
E+EP NK+ KP E A ++S I+ +G P SF + G
Sbjct: 101 EYEPFNKDFYEEKPSVSGMSEQEVADY--MKSLAIRVSGF-------DVPRPIKSFADCG 151
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
P L+ + ++G+ PT +Q A+P +L D++ + TGSGKT A++LP++ +
Sbjct: 152 FPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHI---- 207
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
E K+ V+ AP+REL QI E KK P + + V + GG ++ Q
Sbjct: 208 ----MDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLR-VAAVYGGVSKFDQF 262
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
+ L K IV+ TPGR+ ++ L +LVLDE D + F + IV +
Sbjct: 263 KEL-KAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQI- 320
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
R +RQT++ SAT+P+ V R AR DP+ V
Sbjct: 321 ----------------RPDRQTLLFSATMPYKVERLAREILTDPIRVTV----------- 353
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLP-PALKHYYCVTKLQHKVDTLRRCVHALDAQT 415
G ++N KQ LP A K + + KL +D
Sbjct: 354 -----------GQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDD----------GD 392
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
V+ F ++ + +L RG + A LHGD + +R TL+KFK+G VLV +++AR
Sbjct: 393 VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAAR 452
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG-RRGTVVSICEEPEV 522
GLD+ VVN D+ + + HR GRTGR G + GT ++ + EV
Sbjct: 453 GLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEV 500
>gi|357454677|ref|XP_003597619.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|358344685|ref|XP_003636418.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula]
gi|355486667|gb|AES67870.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355502353|gb|AES83556.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 499
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 192/421 (45%), Gaps = 64/421 (15%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E + P SF + P +LE +++ GF PT +QS P LK D++ + TGS
Sbjct: 84 TVEGKDVPKPVKSFSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGS 143
Query: 159 GKTLAYLLPILSKVG--PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216
GKTLAYLLP + V P+ D G+G +++AP+REL +QI +E K G
Sbjct: 144 GKTLAYLLPAIVHVNAQPILDP---GDGPI-------VLVLAPTRELAVQIQQEATK-FG 192
Query: 217 PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276
S + + GG + Q L+K I++ TPGR+ ++ + + +LVLDE
Sbjct: 193 ASSRIKSTCIYGGVPKGPQVRDLQKGV-EIIIATPGRLIDMLESNHTNLRRVTYLVLDEA 251
Query: 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
D +L F + +IV + R +RQT+ SAT P V + AR +
Sbjct: 252 DRMLDMGFDPQIRKIVSQI-----------------RPDRQTLYWSATWPKEVEQLARQF 294
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
++P V +I E + A A+K Y +
Sbjct: 295 LYNPYKV----IIGSEDLKANH----------------------------AIKQYVDIVP 322
Query: 397 LQHKVDTLRRCVH-ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455
+ K D L + + +D ++ FM+ + +L G A +HGD + R
Sbjct: 323 EKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWV 382
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
L +FK+G+ ++ +++ARGLDV + V+N D P Y HR GRTGR G +GT +
Sbjct: 383 LSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYT 442
Query: 516 I 516
Sbjct: 443 F 443
>gi|397676010|ref|YP_006517548.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395396699|gb|AFN56026.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 506
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 206/421 (48%), Gaps = 65/421 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL LL+ + G+ PT VQ+AAIPS+L D++ + TG+GKT +++LP++
Sbjct: 16 SFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI- 74
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D ++G + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 75 ------DILAHGRCRARMP---RSLILEPTRELAAQVAENFEKY-GKYHKLSMSLLIGGV 124
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ AL K +++ TPGR+ ++ GK+ C LV+DE D +L F +
Sbjct: 125 PMAEQQAALEKGV-DVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIET 183
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + P S RQT++ SAT+P ++ + A + +P ++
Sbjct: 184 ICTKL----------PTS-------RQTLLFSATMPPAIKKLADRFLSNPKQIEI----- 221
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S PAT +N+ + + + S P + K C D LR A
Sbjct: 222 --SRPAT-------------ANTQINQRLIEVS-PRSKKKKLC--------DMLR----A 253
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
T I F N ++ LE +G ++HGD+ + R + L++FKNG++ VLV +
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKK 527
+++ARGLDV V N D+PT Y HR GRTGR G G T V+ +E + ++K
Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEK 373
Query: 528 M 528
+
Sbjct: 374 L 374
>gi|271969585|ref|YP_003343781.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
Length = 697
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 185/409 (45%), Gaps = 59/409 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F +LG+ P + + LE EG P +Q A+P L D++ Q+ TG+GKT A+ + +L
Sbjct: 39 TTFRDLGVTPEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAML 98
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+VG + G ++V P+REL +Q+ ++ G + + + GG
Sbjct: 99 QRVGKPRKNRKKPRG----------LVVVPTRELAVQVTEDLVTAAGKLGSR-ILTVYGG 147
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q EAL++ ++VGTPGR+ ++ L LVLDE D +L F +
Sbjct: 148 RAYEPQVEALKQGV-DVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIE 206
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI++ + + RQT++ SAT+P ++ +R + P V+A+N
Sbjct: 207 RIIKLIPEK-----------------RQTMLFSATLPGEIVALSRRYLTRPTHVRAEN-- 247
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
A+ P + K++ + R +
Sbjct: 248 ----------------------------NDAEAEATPQTTQFVWRAHRMDKIEIVGRLLQ 279
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ F R V +L+ RG AA +HGDLG+ R L+ F+NG++ VLV
Sbjct: 280 CDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVA 339
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
+++ARG+DV + VVN D P D Y HR GRTGR G+ G V+ E
Sbjct: 340 TDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVE 388
>gi|291613137|ref|YP_003523294.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291583249|gb|ADE10907.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 475
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 203/421 (48%), Gaps = 65/421 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL L P LL L++ + T +Q+ ++P L +D++ Q+ TGSGKT A+ LP+L+
Sbjct: 20 FNELPLSPALLANLQQLEYRTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLTN 79
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P ++ ++A+++ P+REL Q+ +E+++L +D + LVGG+
Sbjct: 80 LNP-------------RRFAVQAMVLCPTRELADQVTQELRRLARFADNIKILSLVGGST 126
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q ++L ++ IVVGTPGRI + G L LVLDE D +L F + + +
Sbjct: 127 MRPQRDSL-EHGAHIVVGTPGRIMDHLERGSLKLDALNTLVLDEADRMLDMGFYDDIAFV 185
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
V+H A+RQT++ SAT P + R A+ + P V+
Sbjct: 186 VKHCP-----------------AQRQTMLFSATYPEGIARLAQKFMRKPQEVK------- 221
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+P G+ ++ ++ Q++ LKHY V+ L
Sbjct: 222 --LPEQHEGS-----KIRQRFYEVKHEERLQAVATLLKHYRPVSTL-------------- 260
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
AF N +Q +D + L A G+ A L+GD+ + R L +F N VLV +
Sbjct: 261 ------AFCNTKQQCRDLLDVLHAEGIHALTLNGDMEQRERDQVLIQFANRSCSVLVATD 314
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+A+ + V+N+D+ D + HR GRTGR G +S+ ++ + + K
Sbjct: 315 VAARGLDIAQLEAVINVDVTPDPEIHIHRIGRTGRADAEGWALSLASPADMHRISNIAKM 374
Query: 532 L 532
+
Sbjct: 375 V 375
>gi|94311518|ref|YP_584728.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 556
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 194/414 (46%), Gaps = 57/414 (13%)
Query: 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAY 164
AP A +F GL P +L L +G+ PT +Q+ AIP +L DV+ + TG+GKT +
Sbjct: 68 APAAEQTFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGF 127
Query: 165 LLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224
LPI+ ++ PL + S+ S + + A+++ P+REL Q+ + + +D ++
Sbjct: 128 ALPIIQRLLPLANASA-----SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRST- 181
Query: 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
+ GG + + Q +ALR+ I+V TPGR+ + ++ + LVLDE D +L F
Sbjct: 182 VVFGGVDMNPQTDALRRGV-EILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGF 240
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+ RI+ + A+RQT++ SAT + + A S+ P+ ++
Sbjct: 241 LPDLQRIIN-----------------LLPAQRQTLLFSATFSPEIKKLASSYLKQPVTIE 283
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
S+++N +Q + K V L+ + +
Sbjct: 284 V----------------------ARSNSTNENVRQVVYQVQDGHKQAAVVHLLKQRANEQ 321
Query: 405 --RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
R+C I F+N+ LE G+ AA +HGD + R TL FKNG
Sbjct: 322 QSRQC---------IVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNG 372
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+ LV +++ARGLD+ V+N DLP + Y HR GRTGR G G +SI
Sbjct: 373 TIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSI 426
>gi|440464063|gb|ELQ33563.1| ATP-dependent RNA helicase dbp-3 [Magnaporthe oryzae Y34]
gi|440477588|gb|ELQ58619.1| ATP-dependent RNA helicase dbp-3 [Magnaporthe oryzae P131]
Length = 623
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 204/413 (49%), Gaps = 41/413 (9%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L PLL ++ GF PT +QSA+ P L DVV + TGSGKTLA+ +P ++
Sbjct: 189 FTQLPSSPLLAKK-PFAGFTAPTPIQSASWPYSLDGRDVVGIAETGSGKTLAFSVPCINA 247
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ L + S N + G T AVIV+P+REL MQ I KL AV L GGA
Sbjct: 248 LQALPE-GSKPNKKYGA-THALAVIVSPTRELAMQTHAAISKLAELVGMSAVC-LFGGAP 304
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LRK K A I+V TPGR+ + + + RF+VLDE D +L F + +
Sbjct: 305 KDEQRTLLRKGKGADIIVATPGRLKDFLSDDTVSLSAARFVVLDEADRMLDKGFEDDVKL 364
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ G P R +RQT+M +AT P SV A S+ +P+ V I
Sbjct: 365 IL-------GLCPD--------RGQRQTLMFTATWPASVRGLAESFMVNPVKV----TIG 405
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH----KVDTLRR 406
+ G + +G + +N + Q + + P K V L+ K R
Sbjct: 406 GRTRAVDGDDDGNGVVE---LQANSRISQRVEVVNPWEKETRLVQLLKEAQAGKNKNDRV 462
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
V L + + NN L+ +G++ A +HGDL + R+ +L+ FK+G+ V
Sbjct: 463 LVFCLYKKEAVRVENN----------LQRKGIRVASIHGDLKQEQRTASLEAFKSGKTTV 512
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
LV +++ARGLD+ E LV+N+ P Y HR GRTGR G++G +++ E
Sbjct: 513 LVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKQGQAITLFTE 565
>gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22]
gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22]
Length = 865
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 191/409 (46%), Gaps = 49/409 (11%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F +LG+ P E LE G P +Q +P L D++ Q+ TG+GKTL + LP+L
Sbjct: 30 TTFRDLGIFPETAEALEAVGIITPFPIQEMTLPVALTGTDIIGQAKTGTGKTLGFGLPLL 89
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+V D + +A++V P+REL Q+ ++ G V + GG
Sbjct: 90 ERVVVPADVEAGRAKPEDLVDSPQALVVVPTRELCTQVTNDLL-TAGKVRNVRVLAIYGG 148
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q EAL+K +V+GTPGR+ +++ KL+ + LVLDE DE+L F +
Sbjct: 149 RAYEPQVEALKKGV-DVVIGTPGRLLDLAGQKKLNLKNVKCLVLDEADEMLDLGFLPDVE 207
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I+ + A RQT++ SAT+P +VI AR + P ++A
Sbjct: 208 KIINM-----------------LPARRQTMLFSATMPGAVIGLARRYMSQPTHIRA---- 246
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
T P + + +S +H Y + K + + R +
Sbjct: 247 -------TSPDDEGATVRNTS------------------QHIYRAHNMD-KPELVARILQ 280
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A V+ F R D +L+ RG + +HGDLG+ AR L+ F+NG+V VLV
Sbjct: 281 ADGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVC 340
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
+++ARG+DV V+N P D Y HR GRTGR G +G +++ +
Sbjct: 341 TDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGIAITLVD 389
>gi|67423413|dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa]
Length = 843
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 192/411 (46%), Gaps = 52/411 (12%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P SF GL L+L+ ++ G+ PT VQ AI +L D++ + TGSGKT A+L
Sbjct: 405 PNYITSFETAGLRDLVLQNIKASGYTKPTPVQKGAIAVVLARRDLIASAVTGSGKTAAFL 464
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
+P+++ L +K G SG+ E VI++P+REL +QI RE +K S K+V
Sbjct: 465 VPVVNI---LLEKQVQG-APSGEVQKPEVVIISPTRELAIQIHREARKFSHNSVLKSVI- 519
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
+ GG S Q+ +L N I+VGTPGR+ + G + +F +LDE D +L F
Sbjct: 520 VYGGTQVSHQKSSL-MNGCNILVGTPGRLKDFVDKGFIDFSNVQFFILDEADRMLDMGFG 578
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ I +H + R T+M SAT P V + A + HD + V
Sbjct: 579 SDIEFIAQH-------------PTMTPVGRRVTLMFSATFPDDVQKIAGKYLHDYVFVTT 625
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
N+ G M+ P + ++ V + Q K + L
Sbjct: 626 GNI---------------GGMN-----------------PDVCQEFHEVQR-QDKRNKLV 652
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ L VI F+ + + L +A +HGD + R L++FK+G+
Sbjct: 653 EILRDLGNSRVIVFVESKKTADFIAAFLANTQFQATSIHGDRLQSQREQALREFKSGQRN 712
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+LV ++ARGLD+A + V+N DLP D Y HR GRTGR+G G +S
Sbjct: 713 ILVATNVAARGLDIAGVEYVINYDLPADIEEYVHRIGRTGRVGNAGRSISF 763
>gi|343502075|ref|ZP_08739937.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|418478063|ref|ZP_13047178.1| ATP-dependent RNA helicase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342815654|gb|EGU50567.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|384574338|gb|EIF04810.1| ATP-dependent RNA helicase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 419
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 207/428 (48%), Gaps = 66/428 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ F LGL L + ++ GF+ PTEVQ+ AIP +L+ DV+ + TG+GKT A+ LPI
Sbjct: 2 STQFEALGLCSTLTQTTDKLGFSQPTEVQAQAIPHVLEGADVLAGAQTGTGKTAAFGLPI 61
Query: 169 LSKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
L K+ +D SN D+ A+++ P+REL Q+ + + + K V
Sbjct: 62 LHKLLASDVKRDPQSN---------DVLALVLVPTRELAQQVYDNLVQYAQETTIKIVTA 112
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
GG + + Q L + I++ TPGR+ + ++ ++L+LDE D +L F
Sbjct: 113 -YGGTSMNVQTRNLSEG-CDILIATPGRLLDHMFCKNINLFKTQYLILDEADRMLDMGFM 170
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ RI++ ERQT+ SAT + A ++P+ VQ
Sbjct: 171 PDIKRILKRCNE-----------------ERQTLFFSATFDKRIKTIAYKMLNEPVEVQ- 212
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
V P SN A+ Q + P K + K + L
Sbjct: 213 --VTP----------------------SNSTAETVKQMVYPVDK--------KRKAELLA 240
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+ + + Q V+ F T+Q DA+ K L+ G+KAA ++GD + AR L FK+G+V
Sbjct: 241 YLIGSRNWQQVLVF-TKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQV 299
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
R L+ +++ARGLD+ + + VVN D+P S Y HR GRTGR G+ G VS+ E ++
Sbjct: 300 RALIATDVAARGLDIQQLEQVVNFDMPYKSEDYVHRIGRTGRAGKEGFAVSLMSRDEEYL 359
Query: 525 VKKMQKQL 532
++ +++ L
Sbjct: 360 LEAIERLL 367
>gi|452943512|ref|YP_007499677.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp. HO]
gi|452881930|gb|AGG14634.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp. HO]
Length = 364
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 201/413 (48%), Gaps = 66/413 (15%)
Query: 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184
LE G+ PT +Q IP L+ +D++ Q+ TG+GKT A+ +PI+ K+ G
Sbjct: 15 LEDAGYKEPTPIQRDTIPLALEGYDILGQAATGTGKTGAFAIPIVEKLQ---------KG 65
Query: 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKP 244
+ G ++A+++ P+REL +Q+ +I +L + + GG + + + L+
Sbjct: 66 KPG----VKALVLTPTRELAIQVKEQIY-MLTKYKRLSSYVFYGGTSVKQNLDILQNKNV 120
Query: 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
I++GTPGRI ++ L+ +LVLDE D++L F E + I+ +
Sbjct: 121 DILIGTPGRIKDLIDRKALNLSNVEYLVLDEFDQMLDMGFIEDIEYIISFL--------- 171
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSG 364
PK ER T M SATVP + A+ + K+ E +P+
Sbjct: 172 -PK-------ERTTYMFSATVPNRIELLAKRF--------LKSDFKFEKVPSV------- 208
Query: 365 PMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
N++ K S P H +L H +DT H + + ++ F+ +
Sbjct: 209 -----ELKPNIEEKMIKLSSPGEKIH-----ELMHIIDT-----HPM--EKMLVFVKTKK 251
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
KD F L +G++ LHGDL + R L FK+G V +L+ +++ARGLD+ + +
Sbjct: 252 DAKDLFFLLTKKGIRVQALHGDLTQRQREKALSAFKSGAVSILIATDVAARGLDIKDVGV 311
Query: 485 VVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-ICEEPE--VFVVKKMQKQLAV 534
V+N ++P D Y HR GRTGR+G+ G S IC E + +KK++ +++V
Sbjct: 312 VINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSKALLRIKKLRSKISV 364
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 201/432 (46%), Gaps = 60/432 (13%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A + F L L P LL+ L G+ PT +Q+ AIP+IL D++ + TGSGKT A+ LP
Sbjct: 9 AKHGFSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALP 68
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL+K+ +S K I A+++ P+REL +Q+ K + K+ +
Sbjct: 69 ILNKLTAQICLQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSAL-VY 127
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + Q + L I+V TPGR+ + G L+ + FLV DE D +L F++
Sbjct: 128 GGVSIDAQAQILAAGVD-ILVATPGRLLDHLRRGSLNLNQLEFLVFDEADRMLDMGFKDE 186
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ IV+ + PK+ RQT++ SAT S+ ++S DP ++
Sbjct: 187 IDAIVKQL----------PKT-------RQTLLFSATFDESIYGLSQSLLRDPKQIEV-- 227
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
N A + DQ + Y V K+ +
Sbjct: 228 -----------------------GERNAAAVEIDQRV-------YAVDS-DRKLALVTHL 256
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + + Q V+ F L G+ A HGDL + AR L+ FK+GEVRVL
Sbjct: 257 IESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFKDGEVRVL 316
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS--------ICEE 519
V +++ARG+D+ + + V+N +LP + Y HR GRTGR G +G ++ + EE
Sbjct: 317 VATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKGLAITLLCSEDEHLLEE 376
Query: 520 PEVFVVKKMQKQ 531
EV + K++ +Q
Sbjct: 377 VEVVLDKRLPQQ 388
>gi|340616136|ref|YP_004734589.1| RNA helicase RhlE [Zobellia galactanivorans]
gi|339730933|emb|CAZ94197.1| RNA helicase RhlE [Zobellia galactanivorans]
Length = 433
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 214/447 (47%), Gaps = 62/447 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LG+ +L+ +E +G+ PT +Q AIP +L D++ + TG+GKT A+ +PI+
Sbjct: 2 TFKDLGIALPILKAIEEQGYTNPTPIQEQAIPILLNKKDLLGVAQTGTGKTAAFSIPIIH 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ N ++ K I +IV P+REL +QI + K + GG
Sbjct: 62 HL-------HNNPEQTKGKRRIRTLIVTPTRELAIQIADNFTAYSKYTHVKNTV-IFGGV 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ RQ ALR A++ TPGR+ ++ + F+VLDE D++L F + +
Sbjct: 114 KQQRQVNALRNGVDALI-ATPGRLLDLMNQNIISLRDIEFVVLDEADQMLDMGFIHDIKK 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + PK +RQ++ SAT+P S++ +++ L+ A +
Sbjct: 173 IIAKL----------PK-------QRQSLFFSATMPTSIVELSKT------LLGAFERVT 209
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
++ AT A++ DQ L + V+KL +K L ++
Sbjct: 210 IKPQQAT-------------------AEKVDQGL-------FFVSKL-NKPKLLVHLINE 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ +V+ F V KL +K+A +HG+ + AR L FK+G++RVL+
Sbjct: 243 RPSDSVLVFSRTKHGANKIVKKLSQADIKSAAIHGNKSQTARQKALGDFKDGKLRVLIAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVVKK 527
+++ARG+DV + LV+N DLP Y HR GRTGR G +S C E P + ++K
Sbjct: 303 DIAARGIDVEDLSLVINYDLPNVPETYVHRIGRTGRASASGIALSFCDREERPYLKDIEK 362
Query: 528 MQKQLAVPIQACEFTEGRLVIGKEEEK 554
+ KQ + +FT+G EEEK
Sbjct: 363 LIKQQVPRMPEHQFTDGDDEPAAEEEK 389
>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 620
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 202/419 (48%), Gaps = 64/419 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L L+ GF PT +Q+A+IP ++K D + ++ TG+GKT A+ LP+L+K
Sbjct: 8 FSDLALNDAILSALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSLPLLNK 67
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + K +A+++AP+REL +Q+ EIK L V ++ GG +
Sbjct: 68 LELSQRKP-------------QAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTS 114
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q AL K+ IVVGTPGR+ ++ +LH VLDE DE+L+ F + + I
Sbjct: 115 IVDQMRAL-KSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAI 173
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+EH P+SA Q ++ SAT+P P+L KN++
Sbjct: 174 MEHA----------PESA-------QRVLFSATMP-------------PML---KNIVER 200
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P++ + N + +Q + V K K + + R +
Sbjct: 201 ---------FLRNPITIDVAGKNHTVDKVEQQ--------FWVVKGVEKDEAMSRLLETE 243
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ I F+ + + L ARG KA+ LHGD+ + R T+ K G + +LV +
Sbjct: 244 ETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATD 303
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+ ARGLDV V N D+P D Y HR GRTGR GR+G + + ++ +++ +++
Sbjct: 304 VVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIER 362
>gi|395333626|gb|EJF66003.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 461
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/438 (29%), Positives = 204/438 (46%), Gaps = 66/438 (15%)
Query: 94 AGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQ 153
A S E ++ A +F LGL LLE LE+ + PT++Q+ A+P L+ D++
Sbjct: 7 ASTSSSPEPQAIAAAPPTFKSLGLIDPLLEALEQMKYKAPTDIQAEALPHALQGRDIIGV 66
Query: 154 SYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213
+ TGSGKT A+ LPIL K+ + G + A ++AP+REL QI ++ +
Sbjct: 67 ASTGSGKTAAFALPILQKLW------EDPKG-------LFACVIAPTRELAFQITQQFES 113
Query: 214 LLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLV 272
+G + ++GG + Q+ AL K KP ++V TPGR+ E + +FLV
Sbjct: 114 -IGSAMGVRCATIIGGVDIQSQKIALAK-KPHVIVATPGRLLEHLEETKGFSLRSLKFLV 171
Query: 273 LDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRA 332
LDE D LL +F + +I++ + PK ER T + SAT+ V +
Sbjct: 172 LDEADRLLDMDFGPILDKILKLI----------PK-------ERTTYLFSATMTTKVAKL 214
Query: 333 ARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYY 392
R+ +P+ V+ S S+ S L YY
Sbjct: 215 QRASLSNPVRVEVN--------------------SKYSTVSTLL-------------QYY 241
Query: 393 CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLAR 452
+ L K L + L ++I F + L + G A LHG L + AR
Sbjct: 242 LLMPLPQKDVHLIYLANTLAQNSMIIFTRTVHDAQRLSIMLRSLGFPAIPLHGQLSQSAR 301
Query: 453 STTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGT 512
L KFK G +LV ++++RGLD+ D+V+N D+PT S Y HR GRT R GR G
Sbjct: 302 LGALGKFKAGGRSILVATDVASRGLDIPSVDIVINYDIPTHSKDYIHRVGRTARAGRSGK 361
Query: 513 VVSICEEPEVFVVKKMQK 530
+++ + +V +V ++++
Sbjct: 362 SITLVTQYDVELVLRIEQ 379
>gi|50293017|ref|XP_448941.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661092|sp|Q6FLF3.1|DBP2_CANGA RecName: Full=ATP-dependent RNA helicase DBP2
gi|49528254|emb|CAG61911.1| unnamed protein product [Candida glabrata]
Length = 544
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 148/498 (29%), Positives = 224/498 (44%), Gaps = 81/498 (16%)
Query: 30 WCHNGVRFLSQVGRHH-GPLTLASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRS 88
+ H G+R GRH GP L ++SE + N +H +V RS
Sbjct: 39 YSHGGLR-----GRHDDGPRELIKPDWESELPNLPPFEKNFYVEH--------EVVRNRS 85
Query: 89 DGIKAAGVKKSLEI----ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSI 144
D + A +K E+ P +F E G P +L+ ++ EGF+ PT +Q P
Sbjct: 86 DQ-EVAQFRKESEMTITGHDIPKPITTFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMA 144
Query: 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVG--PLKDKSSNGNGESGKKTDIEAVIVAPSRE 202
L D+V + TGSGKTL+Y LP + + PL S G+G +++AP+RE
Sbjct: 145 LSGRDMVGIAATGSGKTLSYCLPGIVHINAQPL---LSPGDGPI-------VLVLAPTRE 194
Query: 203 LGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK 262
L +QI +E K G S + + GG R +Q L + IV+ TPGR+ ++ AGK
Sbjct: 195 LAVQIQKECSKF-GKSSRIRNTCVYGGVPRGQQIRELIRGA-EIVIATPGRLIDMLEAGK 252
Query: 263 LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVS 322
+ +LVLDE D +L F + +IV+ + R +RQT+M S
Sbjct: 253 TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI-----------------RPDRQTLMWS 295
Query: 323 ATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ 382
AT P V + AR + +DP+ VQ G+L L A
Sbjct: 296 ATWPKEVQQLARDYLNDPIQVQI--------------GSLE-----------LAASHNIT 330
Query: 383 SLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAA 441
L + + +L +DT + D ++ I +T++ D + L G A
Sbjct: 331 QLVEVVSEFEKRDRLVKHLDTA-----SQDKESKILIFASTKRTCDEITSYLRQDGWPAL 385
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501
+HGD + R L +F+ G ++V +++ARG+DV + VVN D+P + Y HR
Sbjct: 386 AIHGDKDQRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRI 445
Query: 502 GRTGRLGRRGTVVSICEE 519
GRTGR G GT +S E
Sbjct: 446 GRTGRAGATGTAISFFTE 463
>gi|345493218|ref|XP_001605403.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nasonia
vitripennis]
Length = 574
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 192/418 (45%), Gaps = 56/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
+L+ + P +F E G P ++ ++R+ F PT +Q+ P L D+V + TGS
Sbjct: 98 TLKGKGIPNPVFTFEEAGFPEYVMREIKRQNFKEPTSIQAQGWPIALSGRDMVGIASTGS 157
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL+Y+LP + + N + +K A+++AP+REL QI +++ G S
Sbjct: 158 GKTLSYILPAIVHI--------NSQPKLCRKDGPIALVLAPTRELAQQI-QQVADDFGHS 208
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
L GGA + Q L N IV+ TPGR+ + +G+ + C +LVLDE D
Sbjct: 209 SGIKNTCLYGGAPKGSQARDL-DNGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADR 267
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +I+E + R +RQT+M SAT P V A +
Sbjct: 268 MLDMGFEPQIRKIIEQI-----------------RPDRQTLMWSATWPKEVKNLAEEFLK 310
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
D + G + S++++ LQ Q +
Sbjct: 311 DYAQINV------------------GSLQLSANHNILQIIDVCQEYEKEI---------- 342
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
K+ TL + + A I F+ R++ + K++ G A +HGD + R L+
Sbjct: 343 -KLSTLLKEIMAEKENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQD 401
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
F++G+ +LV +++ARGLDV + V+N D P+ S Y HR GRTGR + GT +
Sbjct: 402 FRSGKAPILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTF 459
>gi|441506222|ref|ZP_20988197.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441426010|gb|ELR63497.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 428
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 208/443 (46%), Gaps = 66/443 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL L++ + GF PT VQ AIP +L HD++ + TG+GKT A+ LP+L
Sbjct: 3 FQALGLQSPLVDTVNALGFTEPTPVQKQAIPQVLAGHDIMAGAQTGTGKTAAFALPVLQC 62
Query: 172 V--GPLKDKSSNGNGESGKKT----DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
+ P + S E + I A+I+ P+REL Q+ + + S V+
Sbjct: 63 LLAQPKPEVSVEAQSEESRDDRANIQIRALILTPTRELAQQVYDSVTEY---SKATPVKT 119
Query: 226 LV--GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283
V GG + Q A+R I+V TPGR+ + + G + + VLDE D +L
Sbjct: 120 AVAYGGTSMKVQVNAIRSGAD-ILVATPGRLLDHAYVGTVDLSKVEYFVLDEADRMLDMG 178
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
F + + R+++ M++ +QT+ SAT V + A DP ++
Sbjct: 179 FIDDIKRVMKR-----------------MKSSKQTLFFSATFSKQVKKLAYDILDDPKVI 221
Query: 344 QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT 403
+ V P SN A +Q + P KH K +
Sbjct: 222 E---VTP----------------------SNSAAVTVEQMVYPVDKH--------RKREL 248
Query: 404 LRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L + + + Q V+ F T+Q DA+ K L G+KAA ++GD + AR L FK+G
Sbjct: 249 LSYLIGSRNWQQVLVF-TKTKQGSDALAKELGLDGIKAASINGDKSQGARQRALNDFKDG 307
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+VR L+ +++ARGLD+ + + VVN D+P + Y HR GRTGR G+ G +S+ E
Sbjct: 308 KVRALIATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGQAGNAISLMSLDEE 367
Query: 523 FVVKKMQKQLA--VPIQACEFTE 543
+ +K +++ L +P Q E E
Sbjct: 368 WALKAIEELLDTRLPQQWLEGYE 390
>gi|383810152|ref|ZP_09965659.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
gi|383447091|gb|EID50081.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Rothia aeria F0474]
Length = 536
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 200/427 (46%), Gaps = 54/427 (12%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + G+ + + L G P +Q+ A+P L HD++ Q+ TG+GKTL + LP +
Sbjct: 12 TFADYGVRQDISDALAAVGITTPFPIQTMALPVALAGHDIIAQAKTGTGKTLGFGLPTIQ 71
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
V D+ + G +A+I+ P+REL +Q+ ++ + V L GG
Sbjct: 72 SVTGRDDEGWDDLEFPGAP---QALILVPTRELAIQVGEDLA-IASKLRNARVATLYGGV 127
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q + L+K +VVGTPGR+ ++ G L+ + +VLDE DE+L F ++ +
Sbjct: 128 PYEPQVKLLKKGL-EVVVGTPGRLIDLYNQGALNLKQVKIVVLDEADEMLDLGFLPSVEK 186
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + + A+RQ+++ SAT+P VI AR +
Sbjct: 187 ILSY-----------------LPAQRQSMLFSATMPGPVISMARRY-------------- 215
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
++ PM S+++ QAK +++ K + L R + A
Sbjct: 216 -----------MNKPMRMSAADPEDQAKTK-----ASIRQVVYRVHHMDKDEMLGRILRA 259
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F R +L ARG AA LHGDL + AR L+ F+NG+V +LV
Sbjct: 260 QGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILVAT 319
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV + V+N +P D Y HR GRTGR G GT V+ + ++ K +
Sbjct: 320 DVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTFVDWEDISRWKLIND 379
Query: 531 --QLAVP 535
+L VP
Sbjct: 380 ALELGVP 386
>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
gi|122247124|sp|Q10MH8.1|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 770
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 138/468 (29%), Positives = 210/468 (44%), Gaps = 71/468 (15%)
Query: 58 EFEPTNKN-KSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELG 116
E+EP NK+ KP E A ++S I+ +G P SF + G
Sbjct: 175 EYEPFNKDFYEEKPSVSGMSEQEVADY--MKSLAIRVSGF-------DVPRPIKSFADCG 225
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
P L+ + ++G+ PT +Q A+P +L D++ + TGSGKT A++LP++ +
Sbjct: 226 FPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHI---- 281
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
E K+ V+ AP+REL QI E KK P + + V + GG ++ Q
Sbjct: 282 ----MDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLR-VAAVYGGVSKFDQF 336
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
+ L K IV+ TPGR+ ++ L +LVLDE D + F + IV +
Sbjct: 337 KEL-KAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQI- 394
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
R +RQT++ SAT+P+ V R AR DP+ V
Sbjct: 395 ----------------RPDRQTLLFSATMPYKVERLAREILTDPIRVTV----------- 427
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLP-PALKHYYCVTKLQHKVDTLRRCVHALDAQT 415
G ++N KQ LP A K + + KL +D
Sbjct: 428 -----------GQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDD----------GD 466
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
V+ F ++ + +L RG + A LHGD + +R TL+KFK+G VLV +++AR
Sbjct: 467 VLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAAR 526
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG-RRGTVVSICEEPEV 522
GLD+ VVN D+ + + HR GRTGR G + GT ++ + EV
Sbjct: 527 GLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEV 574
>gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans]
Length = 399
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 196/428 (45%), Gaps = 66/428 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + L P LL+ + GF P+ +QS AI I+ D + Q+ +G+GKT + + +L
Sbjct: 27 TFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K + +A+I++P+REL +QI + + LG +GG
Sbjct: 87 VIDT-------------KSKECQALILSPTRELAIQI-QNVVMHLGDYMNIHTHACIGGK 132
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + L++ + IV GTPGR+ ++ L T + L+LDE DEL + F+E ++
Sbjct: 133 NVGEDVKKLQQGQQ-IVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYE 191
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I +H+ P S + SAT+P V+ + DP+ + K
Sbjct: 192 IYKHL----------PPSVQVVVV-------SATLPREVLEMTSKFTTDPVKILVKR--- 231
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC-VTKLQHKVDTLRRCVH 409
D+ +K YY + K DTL
Sbjct: 232 ------------------------------DEISLSGIKQYYVQCEREDWKFDTLCDLYD 261
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L + F N ++ +++ + +HGD+ + R + + F+ G RVL++
Sbjct: 262 NLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLIS 321
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++ ARG+DV + LV+N DLPTD +Y HR GR+GR GR+GT +++ + +V +K+++
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKELE 381
Query: 530 KQLAVPIQ 537
K + I+
Sbjct: 382 KYYSTKIK 389
>gi|381201506|ref|ZP_09908631.1| DEAD/DEAH box helicase [Sphingobium yanoikuyae XLDN2-5]
Length = 463
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 203/430 (47%), Gaps = 62/430 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL LL+ + G++ PT +Q+ AIP +L D++ + TG+GKT +++LP++
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI- 60
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D ++G + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 61 ------DILAHGRARALMP---RSLILEPTRELAAQVAENFEKY-GKYHKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL K +++ TPGR+ ++ GK+ +GC LV+DE D +L F +
Sbjct: 111 QMGDQIKALEKGV-DVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + A+RQT++ SAT+P + + A + +P ++
Sbjct: 170 ICTK-----------------LPAQRQTLLFSATMPPVIKKLADRFLDNPKSIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT N++ + S + K + LR + A
Sbjct: 208 --ARPATASTNITQRLVKVDS--------------------------RKKREALRAMLEA 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ Q+ + F N +++ L+ G K+ E+HGD+ + +R L++F++G V +LV +
Sbjct: 240 EEVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNILVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ V N D P Y HR GRTGR G +G + + + +QK
Sbjct: 300 DVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDNIQK 359
Query: 531 QLAVPIQACE 540
+ I E
Sbjct: 360 LIGTKIDYVE 369
>gi|374587697|ref|ZP_09660789.1| DEAD/DEAH box helicase domain protein [Leptonema illini DSM 21528]
gi|373876558|gb|EHQ08552.1| DEAD/DEAH box helicase domain protein [Leptonema illini DSM 21528]
Length = 497
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 209/425 (49%), Gaps = 67/425 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A SF E G +L+ ++ GF P+ VQS AIP++L+ D + + TG+GKT AY LP
Sbjct: 10 ATSFEEFGFADTILQGIKEAGFETPSPVQSLAIPALLEGQDATVMAATGTGKTAAYGLPS 69
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L + K+T +++AP+REL QI E+ +L ++ +++ + G
Sbjct: 70 LDYLV-----------RHPKET---MLVMAPTRELAGQISDELYRLGKFANIRSIA-IYG 114
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + RQ + + + ++V TPGR+ ++ +G+L +VLDE DE+L F + +
Sbjct: 115 GRSYGRQTDIISRGV-NVIVATPGRLLDLLDSGRLK-FSPSIVVLDEADEMLDMGFLDDI 172
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI+++V R+ QT++ SAT+P + + + +P++++A
Sbjct: 173 QRIMDYVPDRA-----------------QTLLFSATLPAPIQGLIKKFQKNPVMLKAAG- 214
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+GS+S Q DQS +Y V + + + LR +
Sbjct: 215 ------------------AGSAS------LQIDQS-------FYVVGEEERDLAALR-LI 242
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+++ + I F + L R AA LHGD+ + R T++ F+ G V++LV
Sbjct: 243 ESMNPEKCIVFCRTREETDRLTSTLLGRSFPAAPLHGDIDQSRREKTIRDFRQGRVKILV 302
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLDVA+ V N +P +S Y HR GRTGR GR G ++ E+ ++ +
Sbjct: 303 ATDVAARGLDVADVSHVFNYHIPGNSESYIHRIGRTGRAGRSGEAITFVAPGEMRRLRML 362
Query: 529 QKQLA 533
++ +
Sbjct: 363 KQAVG 367
>gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417956619|ref|ZP_12599583.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342809459|gb|EGU44578.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 419
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 204/428 (47%), Gaps = 66/428 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ F LGL LL LE+ F +PTEVQ AIP +L+ DV+ + TG+GKT A+ LPI
Sbjct: 2 STDFQSLGLCSTLLTTLEKLNFKLPTEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPI 61
Query: 169 LSKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
+ ++ +D SN D+ A+++ P+REL Q+ I + K V
Sbjct: 62 IQRLLESETTRDIQSN---------DVLALVLVPTRELAQQVFDNITLYAQDTIIKVVTA 112
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
GG + + Q L + I++ TPGR+ + ++ ++LVLDE D +L F
Sbjct: 113 -YGGTSMNVQTRNLDQG-CDILIATPGRLLDHLFCKNINLTKTQYLVLDEADRMLDMGFM 170
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ RI++ ERQT+ SAT + A +P+ VQ
Sbjct: 171 PDIKRILKRCNE-----------------ERQTMFFSATFDKRIKTIAYKMLSEPVEVQ- 212
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
V P SN A+ Q + P K + K + L
Sbjct: 213 --VTP----------------------SNSTAETVKQMVYPVDK--------KRKAELLA 240
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+ + + Q V+ F T+Q DA+ K L+ G+KAA ++GD + AR L FK+G+V
Sbjct: 241 YLIGSRNWQQVLVF-TKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQV 299
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
R L+ +++ARGLD+ + + VVN D+P + Y HR GRTGR G+ G VS+ E ++
Sbjct: 300 RALIATDVAARGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYL 359
Query: 525 VKKMQKQL 532
++ +++ L
Sbjct: 360 LEAIERLL 367
>gi|320158163|ref|YP_004190541.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
gi|319933475|gb|ADV88338.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
Length = 443
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 197/432 (45%), Gaps = 58/432 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 3 FKDLGLDNRLLKNLKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK K+ + G VI+AP+REL Q+ E++ +LG A +VGG N
Sbjct: 63 --SLKTKALSARDPRG-------VILAPTRELAKQVYGELRTMLGGLSYDAT-LIVGGEN 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +AL + P +V TPGR+A+ + G LVLDE D +L F + RI
Sbjct: 113 FNDQVKALARY-PKFIVATPGRLADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT+ + + N I
Sbjct: 172 HNAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAS 199
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E + A P + SN + K Q +Y L HK L R +
Sbjct: 200 EMLDA--------PKRIAIGVSNEEHKDITQ-------RFYLCDHLDHKEALLERVLSEA 244
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F KL + +KA L G L + R+T + +F+ ++LVT +
Sbjct: 245 EYRQVIIFTATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFKILVTTD 304
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD++ V+N D+P + Y HR GRTGR G +G +S+ + K+++
Sbjct: 305 VASRGLDISTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLVGPKDWDSFKRVEAY 364
Query: 532 LAVPIQACEFTE 543
L I EF +
Sbjct: 365 LQQDIAFSEFDD 376
>gi|37676020|ref|NP_936416.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|326424408|ref|NP_763420.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|37200560|dbj|BAC96386.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319999798|gb|AAO08410.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
Length = 447
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 197/432 (45%), Gaps = 58/432 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ L+ F T++Q AIP + D++ S TGSGKTLA++LP+L K
Sbjct: 7 FKDLGLDNRLLKNLKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK K+ + G VI+AP+REL Q+ E++ +LG A +VGG N
Sbjct: 67 --SLKTKALSARDPRG-------VILAPTRELAKQVYGELRTMLGGLSYDAT-LIVGGEN 116
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +AL + P +V TPGR+A+ + G LVLDE D +L F + RI
Sbjct: 117 FNDQVKALARY-PKFIVATPGRLADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRI 175
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R RQT+M SAT+ + + N I
Sbjct: 176 HNAAKHR----------------RRQTLMFSATLDHAEV----------------NDIAS 203
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E + A P + SN + K Q +Y L HK L R +
Sbjct: 204 EMLDA--------PKRIAIGVSNEEHKDITQ-------RFYLCDHLDHKEALLERVLSEA 248
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F KL + +KA L G L + R+T + +F+ ++LVT +
Sbjct: 249 EYRQVIIFTATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFKILVTTD 308
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RGLD++ V+N D+P + Y HR GRTGR G +G +S+ + K+++
Sbjct: 309 VASRGLDISTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLVGPKDWDSFKRVEAY 368
Query: 532 LAVPIQACEFTE 543
L I EF +
Sbjct: 369 LQQDIAFSEFDD 380
>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
14600]
Length = 538
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 201/425 (47%), Gaps = 64/425 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F E GL LL + + G+ PT VQ +IP IL+ D++ + TG+GKT A+ LP+L K
Sbjct: 64 FSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHK 123
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ LK + + A+++ P+REL +QI KK + V L GGA
Sbjct: 124 LTLLK------------RPRVRALVLTPTRELAIQIFDNFKKYGRYLHLRTVC-LYGGAK 170
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
R Q ALR+ I+V TPGR+ + + LVLDE D +L F + RI
Sbjct: 171 RGPQIGALRRGAD-ILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRI 229
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
VE + P ++RQT+M SAT+ V + A DP+ VQ V P
Sbjct: 230 VE-------STP----------SKRQTLMFSATMEKEVRQLADRMLKDPVQVQ---VTPE 269
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
T L SS + + A A++ T+ +H D L R
Sbjct: 270 NEAADTVEQKLI-----FSSREDKREIIASLLTDEAVESAIVFTRTKHGADKLSR----- 319
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+L+ RG+++ +HGD + R L +FK+G+VRV+V +
Sbjct: 320 --------------------ELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATD 359
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ + V N D+P ++ Y HR GRTGR G G +++C E E+ ++++++
Sbjct: 360 VAARGLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVEEL 419
Query: 532 LAVPI 536
L PI
Sbjct: 420 LEKPI 424
>gi|345868604|ref|ZP_08820584.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
gi|344046912|gb|EGV42556.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
Length = 413
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 136/436 (31%), Positives = 201/436 (46%), Gaps = 75/436 (17%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +L L LL+ +E +G+ PT VQ IP +L DV+ + TG+GKT A+ LPIL
Sbjct: 2 SFKDLQLIDPLLKAIEEQGYKQPTGVQLQTIPQVLAKKDVIASAQTGTGKTAAFALPILQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ S N G KT I+A+IV+P+REL +QI K G + GG
Sbjct: 62 LL------SKNQEAPRGGKT-IKALIVSPTRELALQIGNNFKAY-GRHTNLRTTVIFGGI 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + L K I++ TPGR+ ++ ++ LVLDE D +L F + +
Sbjct: 114 SEKPQVDVLAKGVD-ILIATPGRLMDLEKQDIINLDAVEILVLDEADLMLDMGFIDDVKH 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IV AE+Q ++ SAT+PF V + A +
Sbjct: 173 IVN-----------------LCPAEKQILLFSATMPFKVEQLANTI-------------- 201
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P + ++ AK Q L Y V K Q+K++ C+H
Sbjct: 202 -----------LKSPERIEVTTTSSAAKNIGQIL-------YYVPK-QNKIEL---CLHL 239
Query: 411 LDAQ---TVIAFMNNTRQLKDAVFKLEA----RGMKAAELHGDLGKLARSTTLKKFKNGE 463
L + +++ F R+ K V KLEA G +HGD + R LKKFK+G
Sbjct: 240 LRNEIKGSILIF----RRTKFGVDKLEASLIKNGYNVETIHGDKTQTDRQEALKKFKSGS 295
Query: 464 VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF 523
V +L+ +++ARG+D+ E D V+N DLP Y HR GRTGR G G S C E
Sbjct: 296 VNILIATDVAARGIDINELDAVINFDLPNIPETYIHRIGRTGRAGSTGMAYSFCGADEKN 355
Query: 524 VVKKMQK--QLAVPIQ 537
+ +Q+ Q+ +P++
Sbjct: 356 YITTIQQLLQIDIPVE 371
>gi|340905357|gb|EGS17725.1| hypothetical protein CTHT_0070680 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 613
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 221/480 (46%), Gaps = 72/480 (15%)
Query: 66 KSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERL 125
K N + P E PKA S G V + ES LG+ P L++ L
Sbjct: 148 KRNNAQPAKPAEPPKAAEPEPESSGGLTTRVDPNTTFES----------LGVAPWLVQSL 197
Query: 126 EREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGE 185
PT +Q +IP +LK D + S TGSGKT+A+ +PIL K
Sbjct: 198 ANMAIRRPTPIQRESIPMLLKGRDCIGGSRTGSGKTVAFSVPILQKW------------- 244
Query: 186 SGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA 245
+ + I A+I+ P+REL +QI +IK + P KA+ LV G R + ++P
Sbjct: 245 AENPSAIFALILTPTRELALQIFEQIKAISSPYSLKAI--LVTGGTDMRPQAIALASRPH 302
Query: 246 IVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGA 301
IV+ TPGR+A+ I +G+ G RF+VLDE D LL+ N +M VE
Sbjct: 303 IVIATPGRLADHIRTSGEDTVCGLRRVRFVVLDEADRLLAANGPGSMLPDVE-------- 354
Query: 302 NPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGN 361
E SAL AERQT++ +AT+ V+ L+SMP PG
Sbjct: 355 ---ECLSALPPPAERQTLLFTATI-------------------TPEVMALKSMP-RAPGR 391
Query: 362 LSGPMSGSSSNSNLQAKQADQSLPPALKHYYC---VTKLQHKVDTLRRCVHALDAQTVIA 418
P+ ++ + ++PP L+ + VT +H + +D ++VI
Sbjct: 392 --PPVFVCEVDTE------NLAIPPTLRQMHLQVPVTHREHYLHVFLLTPQNVD-KSVII 442
Query: 419 FMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLD 478
F N T L G + LH L + R L +F+ R+LV ++++RGLD
Sbjct: 443 FCNRTSTADFLHHLLRLLGHRVTALHSRLPQRQRIDNLGRFRAQAARILVATDVASRGLD 502
Query: 479 VAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQA 538
+ E LV+N D+P D Y HR GRT R GR+G V+ + +V +V ++K++ ++A
Sbjct: 503 IPEVKLVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVELVLAIEKRVGRQMEA 562
>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
Length = 423
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 201/427 (47%), Gaps = 61/427 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL P +L L R+G+ PT +Q+ AIP+++ +DV+ + TG+GKT + LPIL
Sbjct: 2 TFSELGLCPEILNALTRQGYTEPTPIQAQAIPAVMAGNDVMAAAQTGTGKTAGFTLPILE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ GN E K +I+ P+REL Q+ + G + + GG
Sbjct: 62 ML--------KGN-ERAKANTARVLILTPTRELAAQVGESVANY-GKDLPLSYAVVFGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LRK I+V TPGR+ ++ + LVLDE D +L F + +
Sbjct: 112 KINPQMMKLRKGV-DILVATPGRLLDLYQQNAIRFPQLETLVLDEADRMLDMGFIHDIKK 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + A+RQ +M SAT + + A+S ++P+ +
Sbjct: 171 IIK-----------------LLPAKRQNLMFSATFSDEIRKLAKSLVNNPVEI------- 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S + N A++ +Q+L Y K HK L + +
Sbjct: 207 ------------------SVAAPNATAERIEQTL-------YAAEK-THKPRMLMQILRN 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
L+ VI F V +L+ G AA +HG+ + AR+ L FK+G V+VLV
Sbjct: 241 LNLPQVIVFSRTKHGANRLVKQLDKDGFLAAAIHGNKSQGARTKALSDFKSGAVQVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ + V+N DLP + Y HR GRTGR G+ G +S+ + E +K ++K
Sbjct: 301 DIAARGLDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQVGHAISLVMDEEFRTLKAIEK 360
Query: 531 QLAVPIQ 537
+ PI+
Sbjct: 361 LIGQPIE 367
>gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1]
gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
gi|355646784|ref|ZP_09054619.1| hypothetical protein HMPREF1030_03705 [Pseudomonas sp. 2_1_26]
gi|386068635|ref|YP_005983939.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|416856302|ref|ZP_11911946.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 138244]
gi|416874977|ref|ZP_11918470.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 152504]
gi|421165322|ref|ZP_15623657.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC
700888]
gi|421172218|ref|ZP_15629994.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CI27]
gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
gi|334842177|gb|EGM20790.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 138244]
gi|334842530|gb|EGM21136.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 152504]
gi|348037194|dbj|BAK92554.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|354828323|gb|EHF12446.1| hypothetical protein HMPREF1030_03705 [Pseudomonas sp. 2_1_26]
gi|404538079|gb|EKA47636.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CI27]
gi|404542181|gb|EKA51511.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC
700888]
gi|453045833|gb|EME93551.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA21_ST175]
Length = 458
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 204/426 (47%), Gaps = 68/426 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ +F L L LL L+ G+ T +Q+ ++P IL+ HD++ Q+ TGSGKT A+ L +
Sbjct: 3 STAFSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLAL 62
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
LS + P + +A+++ P+REL Q+ +EI++L +D V L G
Sbjct: 63 LSPLNP-------------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q +L ++ +VVGTPGRI E G L G LVLDE D +L F +++
Sbjct: 110 GVPYGPQVASL-EHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ + R RQT++ SAT P + + A+++ DP V+ +++
Sbjct: 169 AEIIGQLPER-----------------RQTLLFSATYPDGIEKLAKTFMRDPRQVKVESL 211
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+++ Q +Q + P + ++D + R +
Sbjct: 212 -----------------------HADSQIEQRFFEIDP-----------KQRMDAVVRLL 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
Q+ +AF +Q ++ L+A+ + A LHGDL + R L F N VLV
Sbjct: 238 QHFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI---CEEPEVFVV 525
+++ARGLD+A + V+N++L D + HR GR+GR G +G +S+ E +
Sbjct: 298 ATDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAI 357
Query: 526 KKMQKQ 531
+ +QKQ
Sbjct: 358 EDLQKQ 363
>gi|227538389|ref|ZP_03968438.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
gi|227241771|gb|EEI91786.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
Length = 603
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 213/445 (47%), Gaps = 69/445 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPI 168
N FLELG+ ++ + GF P+ +Q AIP +L N D V + TG+GKT A+ LP+
Sbjct: 2 NPFLELGIRHEVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ + +A+++ P+REL +QI ++++K D V + G
Sbjct: 62 LEQL-------------DFSQKHPQALVLCPTRELCLQIAKDLEKFAKYIDDVHVVAVYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GAN S Q +R+ IVV TPGR+ +I + +++VLDE DE+L+ F+E +
Sbjct: 109 GANISDQLRQIRRG-VQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAK 346
+ I+ P+ E++T + SAT+P V R A+++ DP L V K
Sbjct: 168 NNILSET----------PE-------EKKTWLFSATMPREVRRIAQNYMTDPVELTVGTK 210
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N TG N ++H+Y + + + K +R
Sbjct: 211 N---------TGNAN--------------------------IEHHYYLIRAKDKYAAFKR 235
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
V + I F + ++ L G A LHGDL + R +K++++ +++
Sbjct: 236 IVDSNPEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQL 295
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
L+ +++ARG+DV + V+N LP + +Y HR+GRT R G+ G +S+ E+ ++
Sbjct: 296 LIATDVAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIR 355
Query: 527 KMQKQLAVPIQACEFTEGRLVIGKE 551
++K + P + + +G V K+
Sbjct: 356 HIEKIIGKPFERKQVPQGAEVCEKQ 380
>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 399
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/427 (26%), Positives = 197/427 (46%), Gaps = 64/427 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + L P LL+ + GF P+ +QS AI I+ D + Q+ +G+GKT + + +L
Sbjct: 27 TFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K + +A+I++P+REL +QI + + K LG +GG
Sbjct: 87 VIDT-------------KSKECQALILSPTRELAIQI-QNVVKHLGDYMNIHTHACIGGK 132
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N + L++ + IV GTPGR+ ++ L T + L+LDE DEL + F+E ++
Sbjct: 133 NVGDDVKKLQQGQQ-IVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYE 191
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I +H+ P S + SAT+P V+ + DP+
Sbjct: 192 IYKHL----------PPSVQVVVV-------SATLPREVLEMTSKFTTDPV--------- 225
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ K+ + SL + Y + K DTL
Sbjct: 226 -----------------------KILVKRDEISLSGIKQFYVQCEREDWKFDTLCDLYDN 262
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
L + F N ++ +++ + +HGD+ + R + + +F+ G RVL++
Sbjct: 263 LTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNEFRRGNSRVLIST 322
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ ARG+DV + LV+N DLPTD +Y HR GR+GR GR+GT +++ + +V +K ++K
Sbjct: 323 DVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVATLKDLEK 382
Query: 531 QLAVPIQ 537
+ I+
Sbjct: 383 YYSTKIK 389
>gi|408377691|ref|ZP_11175292.1| ATP-dependent RNA helicase [Agrobacterium albertimagni AOL15]
gi|407748682|gb|EKF60197.1| ATP-dependent RNA helicase [Agrobacterium albertimagni AOL15]
Length = 469
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/427 (29%), Positives = 204/427 (47%), Gaps = 59/427 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F +LGL ++ L GF PT +Q IP +L D++ + TG+GKT A+ LP++
Sbjct: 4 TTFDDLGLSKNIVATLTTLGFTTPTPIQEKGIPVVLGGRDLIGLAQTGTGKTAAFGLPMI 63
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ LKD+ N + A+I+AP+REL QI ++ L K + Q+VGG
Sbjct: 64 EML--LKDEKRPDNRTT------RALILAPTRELVNQIGDNLRSYLRRLPLK-INQVVGG 114
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A+ +Q+ L K I+V TPGR+ ++ A + R+LVLDE D++L F +
Sbjct: 115 ASIGKQQLQLEKGT-DILVATPGRLLDLIARNAISLRAVRYLVLDEADQMLDLGFIHDLR 173
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I + V PK RQT++ SAT+P S+ A S+ DPL V V
Sbjct: 174 KISKMV---------PPK--------RQTLLFSATMPASIADLAASFLTDPLKVA---VS 213
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P PG K AD+ +H + V K + L++ ++
Sbjct: 214 P--------PG-----------------KAADK----VEQHVHFVAGQNAKTEMLKKILN 244
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F+ + + L+A G A +HG+ + R LK F++GE++ L+
Sbjct: 245 DNPDGRSIVFLRTKHGAEKLMKHLDATGYSVASIHGNKSQGQRERALKGFRDGEIKTLIA 304
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ V N DLP Y HR GRT R GR G ++ C E +++ ++
Sbjct: 305 TDVAARGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEGRLLRDVE 364
Query: 530 KQLAVPI 536
K + + I
Sbjct: 365 KLMGIDI 371
>gi|406602119|emb|CCH46306.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 396
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/416 (27%), Positives = 188/416 (45%), Gaps = 66/416 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
+SF E+ L LL+ + GF P+ +QS AI I+ D + Q+ +G+GKT + +
Sbjct: 21 VVSSFEEMELKDDLLKGIYGYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIG 80
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+L + K + +A++++P+REL +QI + + K LG +
Sbjct: 81 MLEVI-------------DSKNRETQALVLSPTRELAIQI-QNVIKALGDYMNVQCHACI 126
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG N +AL K + IV GTPGR+ ++ L+T + L+LDE DELLS F+E
Sbjct: 127 GGTNVGSDIKALSKGQH-IVSGTPGRVLDMIKRRNLNTRNVKMLILDEADELLSKGFKEQ 185
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
++ I + A Q ++VSAT+P V+ + DP+ + K
Sbjct: 186 IYDIYRQ-----------------LPAGTQVVVVSATLPKDVLEMTSKFTTDPVKILVKR 228
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYY-CVTKLQHKVDTLRR 406
D+ +K Y+ V K K DTL
Sbjct: 229 ---------------------------------DELTLEGIKQYFIAVEKEDWKFDTLCD 255
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+L + F N +++ K++ +HGD+ + R + F+ G RV
Sbjct: 256 LYDSLTITQAVIFCNTKKKVDWLSDKMKESNFTVVAMHGDMKQDERDQIMNDFRLGNSRV 315
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
L++ ++ ARG+DV + LV+N DLP D +Y HR GR+GR GR+G ++ +V
Sbjct: 316 LISTDVWARGIDVQQVSLVINYDLPNDRENYIHRIGRSGRFGRKGVAINFVTNEDV 371
>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase [Atopobium parvulum DSM 20469]
gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
20469]
Length = 450
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 213/442 (48%), Gaps = 76/442 (17%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL +L + GF+VPT VQ+AAIP++L DVV + TG+GKT A++LP L
Sbjct: 4 TFAELGLNEQILAGVTTLGFSVPTPVQTAAIPAVLAGKDVVASAQTGTGKTAAFMLPTLQ 63
Query: 171 KVGPLK-DKSSNGNGE------------------SGKKTDI-EAVIVAPSRELGMQIVRE 210
++ K DK+ +G+ +GK+ A+IV P+REL QI
Sbjct: 64 RIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDNV 123
Query: 211 IKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270
K + + ++AV + GGA+ Q AL+K ++V TPGR+ ++ +
Sbjct: 124 AKSVCASTGQQAV-IVTGGAHYKHQIAALQKGCD-VLVATPGRLIDLLDKKHTSLEDIQV 181
Query: 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVI 330
LVLDE D +L F ++HRI+E + PK+ QT++ SAT+P S+
Sbjct: 182 LVLDEADRMLDMGFWPSVHRIMEQL----------PKA-------HQTLLFSATLPASIT 224
Query: 331 RAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKH 390
+ DP ++ + Q+ +H
Sbjct: 225 STIDALLKDP--------------------------------ERIEIARTGQTAATIEQH 252
Query: 391 YYCVTKLQHKVDTLRRCVHALD--AQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDL 447
VT+ Q K L+ + + D + V+ F T+ D+++K L+A G+K +H D
Sbjct: 253 LCSVTQGQ-KPQLLKALIDSFDPAPERVLVFC-RTKSRVDSIYKNLKAAGLKVDVMHADR 310
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507
+ AR+ L +F++ +++LV ++ +RG+D+ D+V+N D+P D Y HR GRTGR
Sbjct: 311 PQKARAKALDRFRSASIQILVATDVMSRGIDIQGIDVVINFDVPLDPEDYVHRIGRTGRA 370
Query: 508 GRRGTVVSICEEPEVFVVKKMQ 529
G G + EV +++++
Sbjct: 371 GATGQAYTFMGPDEVTPLREIE 392
>gi|430004424|emb|CCF20219.1| ATP-dependent RNA helicase rhlE [Rhizobium sp.]
Length = 500
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 205/426 (48%), Gaps = 59/426 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL L+ L G++ PT +Q+ AIP +L+ D++ + TG+GKT A+ LP++
Sbjct: 3 NFHELGLAKQLVANLSTLGYDTPTPIQAEAIPHLLQGRDLIGLAQTGTGKTAAFGLPLIE 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ + N +I+AP+REL QI +K + K V +VGGA
Sbjct: 63 MLSKDPKRPDN--------RTTRTLILAPTRELVNQIAVNLKAYVRGMPLK-VNSVVGGA 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ ++Q++ L K I+V TPGR+ ++ A + R+LVLDE D++L F + +
Sbjct: 114 SINKQQQMLEKGTD-ILVATPGRLLDLIARKAIGLTTVRYLVLDEADQMLDLGFIHDLRK 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V PK +RQT++ SAT+P ++ A + DP+ V +V P
Sbjct: 173 ISKMV----------PK-------KRQTLLFSATMPKAIAELAGDYLTDPIQV---SVTP 212
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
PG K AD+ ++ + V K + L++ + A
Sbjct: 213 --------PG-----------------KAADK----VEQYVHFVGGKNDKTELLKKTLTA 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
I FM + + L+ G A +HG+ + R LK F++GE++ L+
Sbjct: 244 NAGGRAIVFMRTKHTAEKLMKHLDQVGYSVASIHGNKSQGQRERALKGFRDGEIQTLIAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + V N DLP Y HR GRT R GR G ++ C E +++ ++K
Sbjct: 304 DVAARGIDIPDVTHVFNYDLPEVPDAYIHRIGRTARAGRDGIAIAFCTSEETGLLRDIEK 363
Query: 531 QLAVPI 536
+ + I
Sbjct: 364 LMGIEI 369
>gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein [Micromonospora sp. ATCC 39149]
gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein [Micromonospora sp. ATCC 39149]
Length = 557
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 197/427 (46%), Gaps = 61/427 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F ELG P +E L G +Q AIP L+ D++ Q+ TG+GKTL + +P+
Sbjct: 50 APTFAELGARPETVEALAEAGITRAFAIQEYAIPIALRGVDMIGQAPTGTGKTLGFGVPL 109
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L +V + G+G +A++V P+RELG+Q+ +++ G + V + G
Sbjct: 110 LERV---FAPAEGGDGVP------QALVVVPTRELGIQVAKDLAAA-GRTRGVRVLPIYG 159
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q +ALRK I+VGTPGR+ ++ L R LVLDE D +L F + +
Sbjct: 160 GVAYEPQIDALRKGV-EILVGTPGRLMDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDV 218
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAE-RQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+I LAM E RQT++ SAT+P ++ +R + P+ + A +
Sbjct: 219 EKI------------------LAMLPEDRQTMLFSATMPDPIVTLSRRFLRRPMTIHAGH 260
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
TGP P + T +K++ + R
Sbjct: 261 TA------ETGPS-------------------------PQTEQLVYRTHSMNKIEIVARI 289
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ A + F R L+ RG A +HGDLG+ AR L+ F+ G++ +L
Sbjct: 290 LQAEGRGLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDIL 349
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLDV+ V+N D P D Y HR GRTGR G G V+ + ++ +
Sbjct: 350 VATDVAARGLDVSGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRI 409
Query: 528 MQKQLAV 534
+ K L +
Sbjct: 410 IDKTLGL 416
>gi|407982755|ref|ZP_11163421.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
gi|407375643|gb|EKF24593.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
Length = 517
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 199/428 (46%), Gaps = 61/428 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELG+ ++ L +G P +Q +P L D++ Q+ TG GKTLA+ +P+L
Sbjct: 7 TFAELGVRDEIVRALAEDGKVHPFAIQELTMPLALAGDDLIGQARTGMGKTLAFGVPLLQ 66
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK---KLLGPSDKK-AVQQL 226
++ ++ G A+++ P+REL +Q+ ++ + L D+K V +
Sbjct: 67 RIADDTERPLTGI--------PRALVLVPTRELCLQVSGDLAAAARYLRVGDRKFTVTSI 118
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q EAL+K + VGTPGR+ +++ G L G LVLDE DE+L F
Sbjct: 119 YGGRPYEPQIEALQKGV-DVGVGTPGRVLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLP 177
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ + R RQ ++ SAT+P +I AR++ + P ++A+
Sbjct: 178 DIERILRLIPER-----------------RQAMLFSATMPDPIITLARTFMNKPTHIRAE 220
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
P + ++ Q Y KV+ + R
Sbjct: 221 -----------------APHQSAVHSTTEQ--------------YVYRAHALDKVEMISR 249
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R + +L RG KAA +HGDLG+ AR L+ F+ GE+ V
Sbjct: 250 ILQAEGRGATMIFTRTKRTAQKVADELAERGFKAAAVHGDLGQGAREKALQAFRTGEIDV 309
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ + V+N +P D Y HR GRTGR G+ G V++ + E+
Sbjct: 310 LVATDVAARGIDIEDVTHVINYQIPEDEQSYVHRIGRTGRKGKAGVAVTLVDWDELTRWA 369
Query: 527 KMQKQLAV 534
+ K L +
Sbjct: 370 LIDKALGL 377
>gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2]
gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
gi|386056522|ref|YP_005973044.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa M18]
gi|418584977|ref|ZP_13149034.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P1]
gi|418591717|ref|ZP_13155608.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P2]
gi|421178365|ref|ZP_15635979.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa E2]
gi|421515071|ref|ZP_15961757.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO579]
gi|424943126|ref|ZP_18358889.1| RNA helicase DbpA [Pseudomonas aeruginosa NCMG1179]
gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
gi|346059572|dbj|GAA19455.1| RNA helicase DbpA [Pseudomonas aeruginosa NCMG1179]
gi|347302828|gb|AEO72942.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa M18]
gi|375045309|gb|EHS37895.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P1]
gi|375049443|gb|EHS41939.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa MPAO1/P2]
gi|404348799|gb|EJZ75136.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO579]
gi|404548419|gb|EKA57370.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa E2]
Length = 458
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 204/426 (47%), Gaps = 68/426 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ +F L L LL L+ G+ T +Q+ ++P IL+ HD++ Q+ TGSGKT A+ L +
Sbjct: 3 STAFSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLAL 62
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
LS + P + +A+++ P+REL Q+ +EI++L +D V L G
Sbjct: 63 LSPLNP-------------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q +L ++ +VVGTPGRI E G L G LVLDE D +L F +++
Sbjct: 110 GVPYGPQVASL-EHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ + R RQT++ SAT P + + A+++ DP V+ +++
Sbjct: 169 AEIIGQLPER-----------------RQTLLFSATYPDGIEKLAKTFMRDPRQVRVESL 211
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+++ Q +Q + P + ++D + R +
Sbjct: 212 -----------------------HADSQIEQRFFEIDP-----------KQRMDAVVRLL 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
Q+ +AF +Q ++ L+A+ + A LHGDL + R L F N VLV
Sbjct: 238 QHFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI---CEEPEVFVV 525
+++ARGLD+A + V+N++L D + HR GR+GR G +G +S+ E +
Sbjct: 298 ATDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAI 357
Query: 526 KKMQKQ 531
+ +QKQ
Sbjct: 358 EDLQKQ 363
>gi|403508500|ref|YP_006640138.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402803335|gb|AFR10745.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 513
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 194/406 (47%), Gaps = 57/406 (14%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
+ P + + LE EG P +Q A+P L D++ Q+ TG+GKTLA+ LP+L L
Sbjct: 1 MSPEISDALEAEGIVEPFPIQELALPIALNGSDIIGQARTGTGKTLAFGLPLLQ----LS 56
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+ E G A++V P+REL +Q+ ++ S + + + GG + Q
Sbjct: 57 QR------EPGTAKRPRALVVVPTRELAIQVAADLTTASKRSGGR-ILTVYGGRSYEPQI 109
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
L++ +VVGTPGR+ ++ L G +VLDE D++L F + RI+
Sbjct: 110 NGLQEGTD-VVVGTPGRLLDLEKQKHLRLDGVASVVLDEADKMLDLGFLPDIERILT--- 165
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
+ P AERQT++ SAT+P ++ +R++ P V+A +
Sbjct: 166 -------KTP-------AERQTMLFSATMPSEIVTLSRNYLTRPTHVRAGD--------- 202
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+ GS+ S + +H + ++ K + L R + A D
Sbjct: 203 ------DNEIDGSAITSRIA------------QHAFRTHQMD-KPEMLARLLQAEDHGQS 243
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F R L++RG AA +HGDLG+ R L+ F+NG++ +LV +++ARG
Sbjct: 244 MVFCQTKRACDRVASDLKSRGFAAAAVHGDLGQSQRERALRAFRNGKINILVATDVAARG 303
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
LDV + VVN + P D Y HR GRTGR GR GT V+ + E+
Sbjct: 304 LDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRTGTAVTFVDWQEM 349
>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 506
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 206/421 (48%), Gaps = 65/421 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL LL+ + G+ PT VQ+AAIPS+L D++ + TG+GKT +++LP++
Sbjct: 16 SFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI- 74
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D ++G + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 75 ------DILAHGRCRARMP---RSLILEPTRELAAQVAENFEKY-GKYHKLSMSLLIGGV 124
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ AL K +++ TPGR+ ++ GK+ C LV+DE D +L F +
Sbjct: 125 PMAEQQAALEKGV-DVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIET 183
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + P S RQT++ SAT+P ++ + A + +P ++
Sbjct: 184 ICTKL----------PTS-------RQTLLFSATMPPAIKKLADRFLSNPKQIEI----- 221
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S PAT +N+ + + + S P + K C D LR A
Sbjct: 222 --SRPAT-------------ANTLIDQRLIEVS-PRSKKKKLC--------DMLR----A 253
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
T I F N ++ LE +G ++HGD+ + R + L++FKNG++ VLV +
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKK 527
+++ARGLDV V N D+PT Y HR GRTGR G G T V+ +E + ++K
Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEK 373
Query: 528 M 528
+
Sbjct: 374 L 374
>gi|340960548|gb|EGS21729.1| ATP-dependent rRNA helicase rrp3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 492
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 192/416 (46%), Gaps = 65/416 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +F +LG+ L E ER G+ PT +Q AIP L+N D++ + TGSGKT A+ LP
Sbjct: 68 APKTFADLGIVESLCEACERLGYKRPTPIQEQAIPLALQNRDLIGIAETGSGKTAAFALP 127
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL L DK + A+++AP+REL QI + + L G ++
Sbjct: 128 ILQA---LLDKPQP----------LFALVLAPTRELAAQIAQAFEAL-GSMISLRCALIL 173
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + +Q AL K KP ++V TPGR+ + + ++LV+DE D LL +F
Sbjct: 174 GGLDMVQQAIALGK-KPHVIVATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGP 232
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I++ + R ER+T + SAT+ V R+ DPL V
Sbjct: 233 ILEKILKFLPR-----------------ERRTFLFSATMSSKVESLQRASLRDPLKV--- 272
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
S S S Q ++ ++HY + + HK L
Sbjct: 273 ----------------------SISTSKYQ------TVSTLVQHYIFIPHI-HKDTYLIY 303
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
V+ +T+I F + + L GM A LHG L + AR L KF+ G +
Sbjct: 304 LVNEFAGKTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRNI 363
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
LV +++ARGLD+ D V+N DLP DS Y HR GRT R G+ G +S + ++
Sbjct: 364 LVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFVTQYDL 419
>gi|254442828|ref|ZP_05056304.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
gi|198257136|gb|EDY81444.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
Length = 406
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 204/428 (47%), Gaps = 64/428 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNH-DVVIQSYTGSGKTLAYLLPIL 169
+F ELG+ L+ +E +G PTE+Q AIP +LKN D V Q+ TG+GKT A+ LP+L
Sbjct: 38 TFKELGVVADLIRGIEEKGILEPTEIQELAIPLLLKNEGDFVGQAQTGTGKTAAFGLPLL 97
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ P + + ++A++++P+REL QI +++ + K + + GG
Sbjct: 98 QRIDPTQKR-------------VQALVLSPTRELAKQIAKQLFHYTKYTAKIFTEAVAGG 144
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q AL + IVV TPGR+ ++ + LVLDE DE+LS F++ ++
Sbjct: 145 EKIEGQIAALSRT-THIVVATPGRLIDLLKVKAVDLSTIDTLVLDEADEMLSMGFQDELN 203
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I+E R ++T + SAT+P V R + L AK+V
Sbjct: 204 KILEFT-----------------RGAKRTWLFSATMPKGVTRMIERY----LSPDAKHVT 242
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P N N++ H+Y V ++ K D + R +
Sbjct: 243 VDRKNPV---------------NKNIE-------------HWYTVCTIEEKPDEIARFIK 274
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A + + F + +++ +L RG + A L GDL + R ++ F+ VLV+
Sbjct: 275 AQKGRRGVVFCRSKAGVQNIANELTERGFEVATLQGDLSQKDRDKVMRGFRKERSEVLVS 334
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++SARG+DV VV+ LP +Y HR+GRT R GR+G ++ +V ++++Q
Sbjct: 335 TDVSARGIDVEGLAYVVHHQLPDQIEYYTHRSGRTARAGRKGISMAFITRGDVKRIRELQ 394
Query: 530 KQLAVPIQ 537
+L + +
Sbjct: 395 TELHIKFR 402
>gi|327405768|ref|YP_004346606.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
taffensis DSM 16823]
gi|327321276|gb|AEA45768.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
16823]
Length = 685
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/451 (27%), Positives = 213/451 (47%), Gaps = 65/451 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPIL 169
+F ELGL +L+ +E GF PT +Q +AIP +L+ D V + TG+GKT A+ LP++
Sbjct: 2 TFKELGLRVEVLQSIEALGFAEPTPIQQSAIPHLLQLESDFVGLAQTGTGKTAAFGLPLI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
KV + + T+ + +++AP+REL +QI ++++ + V + GG
Sbjct: 62 HKV-------------TDRPTETQGLVIAPTRELCLQISKDLEAFAKFDQQIKVVAVYGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ +Q +++ +VV TPGR+ ++ ++ +VLDE DE+L+ F+E +
Sbjct: 109 TDIRKQITDIKRG-ATVVVATPGRLVDLINRKAINLKTVETVVLDEADEMLNMGFKEDID 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ A P + KS + SAT+P V A+++ DPL V
Sbjct: 168 AIL-------SATP-DTKSVW---------LFSATMPKEVAAIAKNYMTDPLEV------ 204
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
A G N SN N++ H Y K + + D L+R +
Sbjct: 205 ------AMGHKN--------QSNENIE-------------HIYYTVKERDRYDALKRLID 237
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A + F + KL G A LHGDL + R + +F+ +++LV
Sbjct: 238 ASPDIFGLVFCRTRNETATVAEKLAKEGYSAEPLHGDLSQAMRDRVMDRFRERSIQLLVA 297
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV V+N +LP D +Y HR+GRT R G++G + + E F +K ++
Sbjct: 298 TDVAARGIDVDNITHVINYNLPDDIENYTHRSGRTARAGKQGKSLVLINTRENFKIKAIE 357
Query: 530 KQLAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
+Q+ +A E + G + K + V+
Sbjct: 358 RQIRTTFKAALIPEASEICGIQLNKLISKVK 388
>gi|385323932|ref|YP_005878371.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
gi|261392319|emb|CAX49846.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
Length = 457
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/422 (28%), Positives = 201/422 (47%), Gaps = 57/422 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVT-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+AE V+N ++PT Y HR GRTGR G G +S+ +E E + + +
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFEAI 364
Query: 529 QK 530
+K
Sbjct: 365 KK 366
>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 506
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 206/421 (48%), Gaps = 65/421 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL LL+ + G+ PT VQ+AAIPS+L D++ + TG+GKT +++LP++
Sbjct: 16 SFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI- 74
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D ++G + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 75 ------DILAHGRCRARMP---RSLILEPTRELAAQVAENFEKY-GKYHKLSMSLLIGGV 124
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ AL K +++ TPGR+ ++ GK+ C LV+DE D +L F +
Sbjct: 125 PMAEQQAALEKGV-DVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIET 183
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + P S RQT++ SAT+P ++ + A + +P ++
Sbjct: 184 ICTKL----------PTS-------RQTLLFSATMPPAIKKLADRFLSNPKQIEI----- 221
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S PAT +N+ + + + S P + K C D LR A
Sbjct: 222 --SRPAT-------------ANTLIDQRLIEVS-PRSKKKKLC--------DMLR----A 253
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
T I F N ++ LE +G ++HGD+ + R + L++FKNG++ VLV +
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKK 527
+++ARGLDV V N D+PT Y HR GRTGR G G T V+ +E + ++K
Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEK 373
Query: 528 M 528
+
Sbjct: 374 L 374
>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
Length = 511
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 195/415 (46%), Gaps = 57/415 (13%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
+ P A +F GL +L L +G+ PT +Q+ AIP +L DV+ + TG+GKT
Sbjct: 24 AVPTAVQTFDSFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAG 83
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ LPI+ ++ PL + S+ S + + A+++ P+REL Q+ + + +D ++
Sbjct: 84 FALPIIQRLLPLANASA-----SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRST 138
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283
+ GG + + Q +ALR+ I+V TPGR+ + ++ + LVLDE D +L
Sbjct: 139 V-VFGGVDMNPQTDALRRGV-EILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMG 196
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
F + RI+ + A+RQT++ SAT + R A S+ P+ +
Sbjct: 197 FLPDLQRIIN-----------------LLPAQRQTLLFSATFSPEIKRLASSYLKQPVTI 239
Query: 344 QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT 403
+ S+++N +QA + K V L+ + +
Sbjct: 240 EV----------------------ARSNSTNENVRQAVYQVEDGHKQAAVVHLLKQRAEQ 277
Query: 404 L--RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
R+C I F+N+ LE G+ AA +HGD + R TL FK+
Sbjct: 278 SQSRQC---------IVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKS 328
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
G + LV +++ARGLD+ + V+N DLP + Y HR GRTGR G G +SI
Sbjct: 329 GTIDALVATDVAARGLDIPDMPCVINFDLPYSAEDYVHRIGRTGRAGASGDALSI 383
>gi|452839340|gb|EME41279.1| hypothetical protein DOTSEDRAFT_73630 [Dothistroma septosporum
NZE10]
Length = 513
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 193/425 (45%), Gaps = 66/425 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELG+ L + GF PT +Q +IP L+ D++ + TGSGKT A+ LPIL
Sbjct: 84 SFAELGVIDQLCDACANLGFTKPTAIQKESIPIALEGKDIIGLAETGSGKTAAFALPILQ 143
Query: 171 KV--GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ P ++ G +++AP+REL QI ++ + L G LVG
Sbjct: 144 ALMAAPQHEQHKFG------------LVLAPTRELAYQISQQFEAL-GSLINVRCAVLVG 190
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
G + Q AL KN P IVV TPGR+ + + ++LV+DE D LL +F
Sbjct: 191 GMDMVPQAIALNKN-PHIVVATPGRLLDHLENTKGFSMRSLKYLVMDEADRLLDLDFGPI 249
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ +I++ + ++R+T++ SAT+ + R+ +P+ V
Sbjct: 250 LDKILQ-----------------VLPSKRRTMLFSATMSTKLNNLTRAALQNPVRVS--- 289
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+S SS + Q +P K Y V L
Sbjct: 290 ------------------ISSSSYQTVKNLMQRYIFIPHKFKDIYLVYLLNE-------- 323
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
QT I F + + F L A G A LHG + + AR L KF+ G +L
Sbjct: 324 ---FAGQTCIVFTRTINETQRIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGSREIL 380
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+ DLV+N DLP DS Y HR GRT R G+ G +S+ + ++ + ++
Sbjct: 381 VATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQR 440
Query: 528 MQKQL 532
++K L
Sbjct: 441 IEKAL 445
>gi|293331893|ref|NP_001169380.1| uncharacterized protein LOC100383248 [Zea mays]
gi|224029005|gb|ACN33578.1| unknown [Zea mays]
Length = 498
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 191/409 (46%), Gaps = 59/409 (14%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
++ P SF G P +L+ ++R GF PT +Q+ + P ++N DVV + TGSGKTL
Sbjct: 143 DNVPTPITSFEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAMQNQDVVAIAKTGSGKTL 202
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
YLLP + L++ + NG +++AP+REL QI+ E K G S + +
Sbjct: 203 GYLLPGFMHIKRLQNSTRNGP---------TVLVLAPTRELATQILDEAVKF-GRSSRIS 252
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GGA + Q L + +VV TPGR+ +I K+ +LVLDE D +L
Sbjct: 253 CTCLYGGAPKGPQLRDLDRGV-DVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDM 311
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +IV+ + R RQT+M +AT P V R A D LL
Sbjct: 312 GFEPQIRKIVKEIPHR-----------------RQTLMYTATWPKEVRRIA-----DDLL 349
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V V G + +NS++ +H +T K
Sbjct: 350 VHPVQVT-------------IGSVDSLVANSSIT------------QHVEIITP-SEKQR 383
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L + + + D+ + I T+++ D + + R A+ +HGD + R L +F++G
Sbjct: 384 RLEQILRSQDSGSKILIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLNQFRSG 443
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG 511
+LV +++ARGLD+ + +V+N D PT Y HR GRTGR G G
Sbjct: 444 RSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATG 492
>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
Length = 426
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/426 (29%), Positives = 201/426 (47%), Gaps = 67/426 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A + F LGL LL+ L+ +G+ P+ +Q AIP+++ DV+ + TG+GKT + LP
Sbjct: 13 ATSGFDSLGLSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLP 72
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI---VREIKKLLGPSDKKAVQ 224
+L ++ +G + I A+++ P+REL Q+ VRE K L +
Sbjct: 73 MLERLN---------HGARPGRLQIRALVLTPTRELAAQVLASVREYSKYL----QLTSD 119
Query: 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
+ GG + Q + L+K ++V TPGR+ ++ G + FLVLDE D +L F
Sbjct: 120 VVFGGVKINPQIQRLQKGVD-VLVATPGRLLDLLQQGAVRFDRVEFLVLDEADRMLDMGF 178
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+ R++ + R RQT+M SAT FS
Sbjct: 179 IHDIRRVISRLPDR-----------------RQTLMFSAT--FSA--------------- 204
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
P+ + G L P+ + +N + +Q + P C + KVD L
Sbjct: 205 -----PIRKL---ATGLLDHPVQIQVAPANQTVRSVEQVVHP------C--DMARKVDLL 248
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+ + + V+ F V +L +G+ AA +HG+ + AR+ L+ FK+G V
Sbjct: 249 SHLIRSGEWLQVLVFSRTKHGANRVVDRLSQQGLLAAAIHGNKSQGARTRALQGFKDGSV 308
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
RVLV +++ARG+D+ + VVNLDLP + Y HR GRTGR G G +S+ E +
Sbjct: 309 RVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAISLVAAEEALL 368
Query: 525 VKKMQK 530
+K +++
Sbjct: 369 LKAIER 374
>gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase [Ruegeria sp. TM1040]
gi|99037048|gb|ABF63660.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
Length = 445
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 197/425 (46%), Gaps = 60/425 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + LP L R+E GFN PT +Q+ AIP L DV+ + TG+GKT A+ +P++++
Sbjct: 4 FSSMDLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLVAQ 63
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ K + G + +I+AP+REL QI ++ L S K +VGG +
Sbjct: 64 MLEYGRKPAAGT--------VRGLILAPTRELANQIAETLRGLTEGSPLK-TGLVVGGVS 114
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q L K I+V TPGR+ +I L C FLVLDE D++L F A+ +I
Sbjct: 115 INPQIHRLSKGTD-ILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKI 173
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
A + ERQT++ SAT+P + A ++ P+ ++
Sbjct: 174 -----------------AALLPEERQTMLFSATMPKQMNEIANAYLKSPVRIEV------ 210
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
T PG A + QS+ ++ + + H
Sbjct: 211 -----TPPGK--------------PAAKVTQSV------HFIAKAEKLSLLKELLSAH-- 243
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D + + F ++ + L+ G KAA +HG+ + R LK FK+GE+ VLV +
Sbjct: 244 DGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVLVATD 303
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ + V N +LP Y HR GRT R G+ G V+ C E+ +K +QK
Sbjct: 304 VAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGDLKAIQKT 363
Query: 532 LAVPI 536
+ + I
Sbjct: 364 MGITI 368
>gi|427400760|ref|ZP_18891998.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
gi|425720273|gb|EKU83196.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
Length = 523
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 201/419 (47%), Gaps = 57/419 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + GL P + L +G+ PT +Q+ AIP +L+ DV+ + TG+GKT ++ LPIL
Sbjct: 42 FADFGLAPEIQRALSDQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTASFSLPILQL 101
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P + S S + + A+++ P+REL +Q+ +K + +A + GG +
Sbjct: 102 LMPHANASM-----SPARHPVRALVLVPTRELAVQVADNVKAYARHTPLRATV-VFGGMD 155
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q E LR+ IV+ TPGR+ + + + LV+DE D +L F + RI
Sbjct: 156 MKPQTEILRRGV-EIVIATPGRLLDHIEQKNVSLGQVQMLVMDEADRMLDMGFLPDLQRI 214
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + PK +RQ +M SAT + + A ++ ++PL ++
Sbjct: 215 INLL----------PK-------QRQNLMFSATFSPEIKKLANTFLNNPLTIEV------ 251
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ SN A++ Q + Y V + + K D + + +
Sbjct: 252 -------------------ARSNATAEKVTQIV-------YKVDE-EQKRDVVEHLIRSR 284
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D + VI F N LE RG+KA+ +HGD + R L FKNG V VLV +
Sbjct: 285 DMKQVIIFSNTKIGASRLSSHLEKRGVKASAIHGDKTQQERMAALDAFKNGSVEVLVATD 344
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARGLD+++ V+N DLP ++ Y HR GRTGR G G +S+ + + ++ ++K
Sbjct: 345 VAARGLDISDLPAVINYDLPYNAEDYVHRIGRTGRAGASGDALSVYSDKDERLLADIEK 403
>gi|367030829|ref|XP_003664698.1| hypothetical protein MYCTH_2307795 [Myceliophthora thermophila ATCC
42464]
gi|347011968|gb|AEO59453.1| hypothetical protein MYCTH_2307795 [Myceliophthora thermophila ATCC
42464]
Length = 580
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/396 (33%), Positives = 194/396 (48%), Gaps = 49/396 (12%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q+A+ P L DV+ + TGSGKT+A+ LP V L + + + GK
Sbjct: 214 FTAPTPIQAASWPFALSGRDVIGIAETGSGKTMAFSLPC---VEALASRPRPKHSKGGKT 270
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVV 248
AV+V+P+REL MQ + L AV L GGA++ Q LRKN A I+V
Sbjct: 271 ACARAVVVSPTRELAMQTHAAMSSLASLVGLSAVC-LYGGASKDEQRALLRKNSGADIIV 329
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGR+ + + G + F VLDE D +L F E + I+ PRE
Sbjct: 330 ATPGRLKDFLSEGCVSLSDVMFAVLDEADRMLDKGFEEDIKLIL------GSCPPRE--- 380
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSG 368
+RQT+M +AT P SV A + DP+ V N T G+ +G SG
Sbjct: 381 ------KRQTLMFTATWPMSVRGLAEGFMVDPVKVTIGN--------RTRAGDENGGGSG 426
Query: 369 SSS-NSNLQAKQADQSLPPALKHYYCVTKLQH------KVD-TLRRCVHALDAQTVIAFM 420
S+ +N + +Q + + P K + L+ K D L C++ +A V F
Sbjct: 427 STELQANTRIEQKVEVVDPNAKEQRLLELLREAQKGSGKNDRILVFCLYKKEAVRVEQF- 485
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
LE +G++ A +HGDL + R+ +L+ FK+G+ VLV +++ARGLD+
Sbjct: 486 ------------LERKGIRVASIHGDLRQDQRTRSLEAFKSGKTTVLVATDVAARGLDIP 533
Query: 481 ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
E LV+N+ P Y HR GRTGR GR G +++
Sbjct: 534 EVKLVINVTFPLTIEDYVHRIGRTGRAGRSGKAITL 569
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 210/428 (49%), Gaps = 64/428 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F + GL PLLL+ + G+ +PT +Q+ AIP +++ DV+ + TG+GKT A+ LPI
Sbjct: 16 APTFADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPI 75
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV- 227
L ++ PL + S+ S + + A+I+ P+REL Q+ +K+ S + ++ V
Sbjct: 76 LHRLMPLANASA-----SPARHPVRALILTPTRELADQVYESVKRY---SKQTPLRSAVV 127
Query: 228 -GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + Q+EALR+ ++V TPGR+ + ++ LVLDE D +L F
Sbjct: 128 FGGVDIGPQKEALRRGC-EVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLP 186
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ + +RQ ++ SAT + + RS+ + P+ ++
Sbjct: 187 DLERIIR-----------------LLPTQRQGLLFSATFSNEIRKLGRSYLNHPVEIE-- 227
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ + AT ++ MSG AK+A A+ H
Sbjct: 228 --VAARNATATTITQIAYKMSG-------DAKRA------AVVH---------------- 256
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
V + + VI F N +LE G+KA +HGD + R L+ FK GE+ V
Sbjct: 257 LVKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELEV 316
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVF 523
LV +++ARGLDVA V+N DLP ++ Y HR GRTGR G G +++ EE +
Sbjct: 317 LVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFLL 376
Query: 524 VVKKMQKQ 531
++K+ K+
Sbjct: 377 DIEKLIKR 384
>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
Length = 506
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 202/420 (48%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L + P++L+ L +E + PT +Q+ AIP++L D++ + TG+GKT A+ +P++
Sbjct: 2 TFEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K G I A++++P+REL +QI +K + ++ +VGG
Sbjct: 62 LLNQQPPKPGMGR-------RIRALVLSPTRELALQISDNVKAYSQFTKLRSTA-IVGGV 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
++ QE AL++ I++ TPGR+ ++ + LVLDE D +L F + R
Sbjct: 114 SQKTQERALQQGA-DILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKR 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ M +++QT+ SAT+P + + ++ H+P+ V+ + P
Sbjct: 173 IIAK-----------------MPSKKQTLFFSATMPAEITQLVQTLLHNPVKVE---ITP 212
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ S A++ +QS+ + Q +++ L +
Sbjct: 213 VSST----------------------AERIEQSV-----YLLETGNKQQQLNELMKDSSI 245
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ A + F R L + A +HGD + +R T L FK+G RVLV
Sbjct: 246 VSA---LVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLVAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ E V+N +LP Y HR GRTGR G GT +S CE EV ++ ++K
Sbjct: 303 DIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFLRDIEK 362
>gi|365881104|ref|ZP_09420434.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 375]
gi|365290768|emb|CCD92965.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 375]
Length = 482
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 199/431 (46%), Gaps = 61/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G + +I+ P+REL Q V+E G K V L+GG
Sbjct: 62 IL-------EKGRARARMP---RTLILEPTRELAAQ-VKENFDRYGAGQKLNVALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ L + +++ TPGR+ + + G L G LV+DE D +L F + R
Sbjct: 111 SFGDQDAKLTRGV-DVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIER 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V P + RQT+ +AT+P + R ++ H+P V+
Sbjct: 170 ICKLV----------PFT-------RQTLFFTATMPPEIRRITDAFLHNPQKVE------ 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH- 409
+S P + + + + LQ ++ K + LRR +
Sbjct: 207 -----------VSKPATTAITVTQLQVPSGREA--------------HQKREVLRRLLRD 241
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A D + I F N R + L+ G LHGD+ + AR+ L +F+ GE+ +LV
Sbjct: 242 AKDLKNAIIFCNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPLLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++ARGLD+ E V N D+P S Y HR GRTGR GR GT +SI P+ V ++
Sbjct: 302 SDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPPDQKSVAAIE 361
Query: 530 KQLAVPIQACE 540
K + I E
Sbjct: 362 KLIGQSIPTIE 372
>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
23970]
gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
23970]
Length = 462
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 194/423 (45%), Gaps = 62/423 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIPS L D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++ P+REL Q+ + +VGGA+
Sbjct: 65 LTKRSEKPGKGP---------RALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGAS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P ++RQT++ SAT +V + AR DP +++ + V
Sbjct: 174 IVE-------ATP----------SDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DDQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ADIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QLA 533
+
Sbjct: 364 YIG 366
>gi|341614600|ref|ZP_08701469.1| DNA and RNA helicase [Citromicrobium sp. JLT1363]
Length = 459
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/421 (27%), Positives = 199/421 (47%), Gaps = 66/421 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ +E G++ PT +Q AIP IL D++ + TG+GKT +++LP++
Sbjct: 3 FADLGLSDKLLQAVEAAGYSEPTPIQEQAIPPILMMKDIIGIAQTGTGKTASFVLPMIDI 62
Query: 172 VGPLKDKSSNGNGESGKKTDI--EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ SG++ + ++I+AP+REL Q+ +K G + L+GG
Sbjct: 63 LA------------SGRRRALMPRSLILAPTRELAAQVAENFEKY-GKQHDLQLALLIGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q +AL + +++ TPGR+ ++ GK+ +GC LV+DE D +L F +
Sbjct: 110 VQMGDQIKALNEGV-DVLIATPGRLMDLFERGKILLNGCEMLVIDEADRMLDMGFIPDIE 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I + EP RQT++ SAT+P + + A + +P ++
Sbjct: 169 TICSKLP--------EP---------RQTLLFSATMPPPIEKLAGKFLDNPKRIEVSR-- 209
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+S+N N+ A + K + K +TLR +
Sbjct: 210 ------------------AASTNENITA-------------FKIPVKPREKRETLRWLLR 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+T I F N +++ L++ G + E+HGD+ + +R L +FK GE+ +LV
Sbjct: 239 NDLVETAIVFSNRKTTVREINKSLQSHGFASGEIHGDMDQSSRIKELDRFKAGEINILVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++ARGLD+ V N D P Y HR GRTGR G +G + E + ++ ++
Sbjct: 299 SDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVTEDDAEAIENVE 358
Query: 530 K 530
K
Sbjct: 359 K 359
>gi|427407716|ref|ZP_18897918.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
gi|425713679|gb|EKU76691.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
Length = 463
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 203/430 (47%), Gaps = 62/430 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL LL+ + G++ PT +Q+ AIP +L D++ + TG+GKT +++LP++
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI- 60
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D ++G + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 61 ------DILAHGRARALMP---RSLILEPTRELAAQVAENFEKY-GKYHKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL K +++ TPGR+ ++ GK+ +GC LV+DE D +L F +
Sbjct: 111 QMGDQIKALEKGVD-VLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + A+RQT++ SAT+P + + A + +P ++
Sbjct: 170 ICTK-----------------LPAQRQTLLFSATMPPVIKKLADRFLDNPKSIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT N++ + S + K + LR + A
Sbjct: 208 --ARPATASTNITQRLVKVDS--------------------------RKKREALRAMLEA 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ Q+ + F N +++ L+ G K+ E+HGD+ + +R L++F++G V +LV +
Sbjct: 240 EEVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNILVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ V N D P Y HR GRTGR G +G + + + +QK
Sbjct: 300 DVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDNIQK 359
Query: 531 QLAVPIQACE 540
+ I +
Sbjct: 360 LIGTKIDYVD 369
>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 594
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 203/437 (46%), Gaps = 65/437 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPILS 170
F ELGL +L+ +E GF VP+ VQ IP IL + +D+V + TG+GKT A+ LP+L
Sbjct: 4 FKELGLEGEILKGIEDLGFEVPSPVQEKVIPVILGEENDLVALAQTGTGKTAAFGLPLLQ 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ D S N I+ +I++P+REL MQI ++++ V + GGA
Sbjct: 64 KL----DTSLNA---------IQVLILSPTRELCMQIGKDLQNYAKYRSDIRVACVYGGA 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q L + ++V TPGR+ ++ + R +VLDE DE+L+ F+E ++
Sbjct: 111 DIRKQIRELDRG-VHVLVATPGRLCDLIKREAVKIEQVRAVVLDEADEMLNMGFKEDLNF 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ P AER T + SAT+P V R A+++ +P +
Sbjct: 170 ILDET----------P-------AERNTYLFSATMPREVERIAKNYLRNPQEI------- 205
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+TG N Q YY V + +TL R +
Sbjct: 206 -----STGKKN--------------------QGADTVTHEYYQVLA-RDCYETLHRVIDC 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
I F ++ KL+ G+ LHGDL + R + +F+ ++VLV
Sbjct: 240 APDMYAIIFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLKVLVAT 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLDV V+N +LP D Y HR+GRTGR GR G V+I E +++++
Sbjct: 300 DVAARGLDVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEKGKLRRIEN 359
Query: 531 QLAVPIQACEFTEGRLV 547
L Q E G V
Sbjct: 360 ILKKKFQYKEVPGGEEV 376
>gi|300770793|ref|ZP_07080671.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762350|gb|EFK59168.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 603
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 213/445 (47%), Gaps = 69/445 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPI 168
N FLELG+ ++ + GF P+ +Q AIP +L N D V + TG+GKT A+ LP+
Sbjct: 2 NPFLELGIRHEVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ + +A+++ P+REL +QI ++++K D V + G
Sbjct: 62 LEQL-------------DFSQKHPQALVLCPTRELCLQIAKDLEKFAKYIDGVHVVAVYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GAN S Q +R+ IVV TPGR+ +I + +++VLDE DE+L+ F+E +
Sbjct: 109 GANISDQLRQIRRG-VQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAK 346
+ I+ P+ E++T + SAT+P V R A+++ DP L V K
Sbjct: 168 NNILSET----------PE-------EKKTWLFSATMPREVRRIAQNYMTDPVELTVGTK 210
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N TG N ++H+Y + + + K +R
Sbjct: 211 N---------TGNAN--------------------------IEHHYYLIRAKDKYAAFKR 235
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
V + I F + ++ L G A LHGDL + R +K++++ +++
Sbjct: 236 IVDSNPEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQL 295
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
L+ +++ARG+DV + V+N LP + +Y HR+GRT R G+ G +S+ E+ ++
Sbjct: 296 LIATDVAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIR 355
Query: 527 KMQKQLAVPIQACEFTEGRLVIGKE 551
++K + P + + +G V K+
Sbjct: 356 HIEKIIGKPFERKQVPQGAEVCEKQ 380
>gi|388508122|gb|AFK42127.1| unknown [Medicago truncatula]
Length = 499
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 192/421 (45%), Gaps = 64/421 (15%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E + P SF + P +LE +++ GF PT +QS P LK D++ + TGS
Sbjct: 84 TVEGKDVPKPVKSFSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGS 143
Query: 159 GKTLAYLLPILSKVG--PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216
GKTLAYLLP + V P+ D G+G +++AP+REL +QI +E K G
Sbjct: 144 GKTLAYLLPAIVHVNAQPILDP---GDGPI-------VLVLAPTRELAVQIQQEATK-FG 192
Query: 217 PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276
S + + GG + Q L+K I++ TPGR+ ++ + + +LVLDE
Sbjct: 193 ASSRIKSTCIYGGVPKGPQVRDLQKGV-EIIIATPGRLIDMLESNHTNLRRVTYLVLDEA 251
Query: 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
D +L F + +IV + R +RQT+ SAT P V + AR +
Sbjct: 252 DRMLDMGFDPQIRKIVPQI-----------------RPDRQTLYWSATWPKEVEQLARQF 294
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
++P V +I E + A A+K Y +
Sbjct: 295 LYNPYKV----IIGSEDLKANH----------------------------AIKQYVDIVP 322
Query: 397 LQHKVDTLRRCVH-ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455
+ K D L + + +D ++ FM+ + +L G A +HGD + R
Sbjct: 323 EKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWV 382
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
L +FK+G+ ++ +++ARGLDV + V+N D P Y HR G+TGR G +GT +
Sbjct: 383 LSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGKTGRAGAKGTAYT 442
Query: 516 I 516
Sbjct: 443 F 443
>gi|375011356|ref|YP_004988344.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359347280|gb|AEV31699.1| DNA/RNA helicase, superfamily II [Owenweeksia hongkongensis DSM
17368]
Length = 610
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/463 (26%), Positives = 223/463 (48%), Gaps = 73/463 (15%)
Query: 76 IEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTE 135
+E+ ++ V+ +++GI A K I+ F A LGL +L+ L GF PTE
Sbjct: 2 LEMKRSIVRVEKTNGIFAPNFKI---IDLKNFEA-----LGLSSPVLKALSEMGFENPTE 53
Query: 136 VQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194
+QS AIP +L K D + + TG+GKT A+ LP++ + +++K + +A
Sbjct: 54 IQSQAIPLLLSKPQDFIGLAQTGTGKTAAFGLPLIDLI-EVEEKRT------------QA 100
Query: 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI 254
+I+AP+REL QI +++ + + + GGA+ S Q +R+ I+V TPGR+
Sbjct: 101 LILAPTRELAQQIGKQLADFSKHLGRLNIVCVFGGASISGQMSEVRRG-AQIIVATPGRL 159
Query: 255 AEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRA 314
+++ G + +++LDE DE+L+ F++ + I+ P+
Sbjct: 160 IDLTKRGAVKLSSLEYIILDEADEMLNMGFKDDLDYILAQA----------PE------- 202
Query: 315 ERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSN 374
E+ T + SAT+P + R +++ +P V+ G+ N+N
Sbjct: 203 EKITWLFSATMPAEIKRIVKNYMVNPAEVKVNQ--------------------GNIVNTN 242
Query: 375 LQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLE 434
++ H Y V K K + LRR + A + F R + L
Sbjct: 243 IE-------------HQYAVLKASDKTEALRRLLDFDPAMYGVVFTRTKRDAQKVAEDLV 289
Query: 435 ARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDS 494
G A LHGDL + R +++F+ G +++L+ +++ARG+DV VV+ LP D
Sbjct: 290 ESGYAAEPLHGDLSQAQRDAVMRRFRAGTLQMLIATDVAARGIDVDNLTHVVHFALPDDP 349
Query: 495 IHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQ 537
+Y HR+GRT R G++G +S+ + ++ VK ++ +L + +
Sbjct: 350 EYYTHRSGRTARAGKKGVSLSLITKGDMRRVKYLESKLGIKFE 392
>gi|116333834|ref|YP_795361.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116099181|gb|ABJ64330.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 452
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 124/438 (28%), Positives = 203/438 (46%), Gaps = 66/438 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
F L P L+ L++ GF PT VQ IP I HDVV QS TGSGKT +LLPI +
Sbjct: 4 DFKNFNLQPYLMTALQKIGFQQPTAVQEKLIPVISAGHDVVGQSQTGSGKTHTFLLPIFN 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA-VQQLVGG 229
++ S N ++AVI PSREL QI ++L + + + VGG
Sbjct: 64 QL-----TSEN---------QVQAVITTPSRELAYQIRTAAEQLAAEAPFEIRIGNYVGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
++ RQ E LR +P +V+GTPGR+ ++ + L H R V+DE D L F
Sbjct: 110 TDKQRQIEKLRHYQPQLVIGTPGRVQDLIQSQALDVHTTRQFVVDEADMTLDLGF----- 164
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++ V + +G R PK+ Q ++ SAT+P + DP L + N
Sbjct: 165 --LDQVDKIAG---RMPKNL-------QMMVFSATIPQRL---------DPFLRKYMNHP 203
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+E +P + + ++ TK Q+K + + +
Sbjct: 204 VVEEIPTAT------------------------VISSTIDNWLISTKGQNKNQLIYQLIT 239
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ V+ F N +++ L+++G+K A +HG + R +++ KN + + +V
Sbjct: 240 MGEPYLVLIFANTKTRVEQIHDFLQSQGLKVAMIHGGIKPRERKRVMREVKNLQFQFVVA 299
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+L+ARG+D+ V+N D+P D + HR GRTGR G GT +++ E + +++
Sbjct: 300 TDLAARGIDIEGVSHVINDDIPEDLDFFVHRVGRTGRQGMPGTAITLYSPDEEAKIAEIE 359
Query: 530 KQLAVPIQACEFTEGRLV 547
+ + Q + G +V
Sbjct: 360 A-MGIKFQPKRISNGEIV 376
>gi|347536342|ref|YP_004843767.1| putative ATP-dependent RNA helicase [Flavobacterium branchiophilum
FL-15]
gi|345529500|emb|CCB69530.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium branchiophilum FL-15]
Length = 629
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/441 (29%), Positives = 209/441 (47%), Gaps = 74/441 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPI 168
N F +LGL L + GF PTEVQ AIP +L K+ D+V + TG+GKT A+ P+
Sbjct: 2 NKFEQLGLSESLQRAIIDLGFENPTEVQEKAIPLLLEKDTDLVALAQTGTGKTAAFGFPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ K+ ++N N +A+I++P+REL +QI EIK + G
Sbjct: 62 IQKI-----DANNRN--------TQALILSPTRELCLQITNEIKNYAKYEKGINAVAIYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ + Q +++ I+V TPGR+ ++ G ++ + VLDE DE+L+ F E +
Sbjct: 109 GASITEQAREIKRG-AQIIVATPGRMQDMINRGLVNISQINYCVLDEADEMLNMGFYEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ +P E+ T + SAT+P V R A+ + H+PL +
Sbjct: 168 VNIL-------STSP----------DEKSTWLFSATMPQEVARIAKQFMHNPLEI----- 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
G N SGS++ + H + + + + + L+R
Sbjct: 206 -------TVGTKN-----SGSAT----------------VSHEFYLVNARDRYEALKRLA 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ F R + KL G AA LHGDL + R + +K F+ ++++LV
Sbjct: 238 DCNPDIFSVVFCRTKRDTQQVAEKLIEDGYNAAALHGDLSQAQRDSVMKSFRGRQIQMLV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV------ 522
+++ARG+DV VVN LP + Y HR+GRTGR G+ GT + I + E+
Sbjct: 298 ATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKIASI 357
Query: 523 -FVVKKMQKQLAVP--IQACE 540
++K+ ++ ++P I+ CE
Sbjct: 358 ERIIKQKFEEKSIPSGIEICE 378
>gi|393723703|ref|ZP_10343630.1| putative helicase [Sphingomonas sp. PAMC 26605]
Length = 552
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 126/437 (28%), Positives = 204/437 (46%), Gaps = 62/437 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL L + G+ PT +Q++AIPSIL D+V + TG+GKT A++LP++
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMID 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+G G S + +I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 62 ILG---------EGRSRARMP-RTLILEPTRELAAQVAENFEKY-GKYHKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q AL K +++ TPGR+ ++ GK+ GC LV+DE D +L F +
Sbjct: 111 SMGDQTAALEKGVD-VLIATPGRLMDLFGRGKILLTGCSMLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + PK+ RQT++ SAT+P + + A + +P ++
Sbjct: 170 ICTKL----------PKT-------RQTLLFSATMPPPIKKLADKFLANPKTIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT +N+ KQ L H K ++ LR+
Sbjct: 208 --ARPAT---------------ANINIKQW-------LVHVTAAKKRDKLIELLRQE--- 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D +T I F N +++ L+ G ++E+HGD+ + R L +FK GE +LV +
Sbjct: 241 -DVKTGIIFSNRKTTVRELNKALQRAGFASSEIHGDMEQSQRIAELDRFKKGEASILVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V N D P Y HR GRTGR G G + +V ++ ++K
Sbjct: 300 DVAARGIDVKGVSHVFNFDAPWHPDDYVHRIGRTGRAGATGIAFTFATPDDVENIQNIEK 359
Query: 531 QLAVPIQACEFTEGRLV 547
+ I+ E E +V
Sbjct: 360 LTGLKIERYEAGEAPVV 376
>gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 525
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 196/408 (48%), Gaps = 52/408 (12%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + + P ++ L +G P +Q+ +P L D++ Q+ TG+GKTL + +PIL
Sbjct: 27 TFADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILH 86
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ D+ + +SG +A+++ P+REL Q+ EI+ + ++ + GG
Sbjct: 87 DIIGPGDEGWDEIPDSGFP---QALVILPTRELAKQVAAEIRAAATHRVARIIE-IYGGV 142
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q EALRK +VVGTPGR+ ++ G L R LV+DE DE+L F + +
Sbjct: 143 GFDSQVEALRKGV-EVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEK 201
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ + PR R T++ SAT+P V+ AR + + P ++A
Sbjct: 202 LISQI------PPR-----------RHTMLFSATMPGPVVALARRYMYQPTHIRA----- 239
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
T P + SS + Q KQ Y V L +K + + R + A
Sbjct: 240 ------TDPTD--------SSQTVRQVKQV----------VYRVHSL-NKTEVIARILQA 274
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ I F R + +L RG +HGDLG+ AR L+ F++G+V VLV
Sbjct: 275 RNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHGKVDVLVAT 334
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
+++ARG+DV + V+N + P D Y HR GRT R G +G+ ++ +
Sbjct: 335 DVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFID 382
>gi|115396304|ref|XP_001213791.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|121738779|sp|Q0CNX1.1|DBP8_ASPTN RecName: Full=ATP-dependent RNA helicase dbp8
gi|114193360|gb|EAU35060.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 527
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 142/516 (27%), Positives = 225/516 (43%), Gaps = 79/516 (15%)
Query: 46 GPLTLASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESA 105
P L +L + EP ++NK +P+ I K +LE+
Sbjct: 40 APTPLPTLSRIKKKEPKDENKDTSTGTDNPVLI------------------KDALEMGLQ 81
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
+SF L + P L+ L PT +Q A IP ILK D + S TGSGKT+A+
Sbjct: 82 DAGESSFKALNVAPWLIGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFA 141
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
+PIL K + I AV++ P+REL +QI + K + P K V
Sbjct: 142 VPILQKW-------------AEDPFGIFAVVLTPTRELALQIYEQFKAISAPQSMKPV-- 186
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLS 281
L+ G R + +P +V+ TPGR+A+ I +G+ G R +VLDE D LL+
Sbjct: 187 LITGGTDMRPQALALSQRPHVVIATPGRLADHIQTSGEDTVRGLKRVRMVVLDEADRLLA 246
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
+ + + SAL +ERQT++ +ATV
Sbjct: 247 PGPGSMLPDVETCL------------SALPPSSERQTLLFTATV---------------- 278
Query: 342 LVQAKNVIPLESMPATG---PGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
V L+SMP P ++ +G ++++ +LPP LK Y +
Sbjct: 279 ---TPEVRALKSMPRASTKPPVFVTEIEAGGTTSAGADGAAPKSTLPPTLKQTYLKVPMT 335
Query: 399 HKVDTLRRCVHALDAQT---VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455
H+ + + + D I F N+T+ L + LH L + RS+
Sbjct: 336 HR-EAFLHVLLSTDGNAGKPAIIFCNHTKTADLLERLLRRLAHRVTSLHSLLPQSERSSN 394
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
L +F+ R+LV ++++RGLD+ LVVN D+P + Y HR GRT R GRRG V+
Sbjct: 395 LARFRASAARILVATDVASRGLDIPSVALVVNYDVPRNPDDYVHRVGRTARAGRRGEAVT 454
Query: 516 ICEEPEVFVVKKMQKQLAVPIQACE----FTEGRLV 547
+ + +V +V +++++ ++ EGR+V
Sbjct: 455 LVGQRDVQLVLAIEERVGRQMEEWSEEGVSVEGRVV 490
>gi|414881886|tpg|DAA59017.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 802
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 197/424 (46%), Gaps = 60/424 (14%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
++ P SF G P +L+ ++R GF PT +Q+ + P ++N DVV + TGSGKTL
Sbjct: 143 DNVPTPITSFEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAMQNQDVVAIAKTGSGKTL 202
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
YLLP + L++ + NG +++AP+REL QI+ E K G S + +
Sbjct: 203 GYLLPGFMHIKRLQNSTRNG---------PTVLVLAPTRELATQILDEAVKF-GRSSRIS 252
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GGA + Q L + +VV TPGR+ +I K+ +LVLDE D +L
Sbjct: 253 CTCLYGGAPKGPQLRDLDRGV-DVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDM 311
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +IV+ + R RQT+M +AT P V R A D LL
Sbjct: 312 GFEPQIRKIVKEIPHR-----------------RQTLMYTATWPKEVRRIA-----DDLL 349
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V V G + +NS++ +H +T + K
Sbjct: 350 VHPVQVT-------------IGSVDSLVANSSI------------TQHVEIITPSE-KQR 383
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L + + + D+ + I T+++ D + + R A+ +HGD + R L +F++G
Sbjct: 384 RLEQILRSQDSGSKILIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLNQFRSG 443
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-ICEEPE 521
+LV +++ARGLD+ + +V+N D PT Y HR GRTGR G G + C++
Sbjct: 444 RSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDS 503
Query: 522 VFVV 525
+
Sbjct: 504 KYAA 507
>gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
gi|420137036|ref|ZP_14645038.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CIG1]
gi|421157477|ref|ZP_15616845.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 25324]
gi|451987568|ref|ZP_21935723.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 18A]
gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
gi|403250212|gb|EJY63666.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa CIG1]
gi|404550581|gb|EKA59319.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa ATCC 25324]
gi|451754718|emb|CCQ88246.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa 18A]
Length = 458
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 204/426 (47%), Gaps = 68/426 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ +F L L LL L+ G+ T +Q+ ++P IL+ HD++ Q+ TGSGKT A+ L +
Sbjct: 3 STAFSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLAL 62
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
LS + P + +A+++ P+REL Q+ +EI++L +D V L G
Sbjct: 63 LSPLNP-------------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q +L ++ +VVGTPGRI E G L G LVLDE D +L F +++
Sbjct: 110 GVPYGPQVASL-EHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ + R RQT++ SAT P + + A+++ DP V+ +++
Sbjct: 169 AEIIGQLPER-----------------RQTLLFSATYPDGIEKLAKTFMRDPRQVRVESL 211
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+++ Q +Q + P + ++D + R +
Sbjct: 212 -----------------------HADSQIEQRFFEIDP-----------KQRMDAVVRLL 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
Q+ +AF +Q ++ L+A+ + A LHGDL + R L F N VLV
Sbjct: 238 QHFRPQSSVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI---CEEPEVFVV 525
+++ARGLD+A + V+N++L D + HR GR+GR G +G +S+ E +
Sbjct: 298 ATDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAI 357
Query: 526 KKMQKQ 531
+ +QKQ
Sbjct: 358 EDLQKQ 363
>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
Length = 472
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/427 (29%), Positives = 202/427 (47%), Gaps = 68/427 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLDRRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q V+E G K V L+G
Sbjct: 62 LL------------EKGRARARMPRTLILEPTRELAAQ-VKENFDRYGVGQKLNVALLIG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q+ L + +++ TPGR+ + + GKL G LV+DE D +L F +
Sbjct: 109 GVSFGDQDAKLGRGV-DVLIATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI + V P + RQT+ +AT+P + R ++ H+P+ V+
Sbjct: 168 ERICKLV----------PFT-------RQTLFFTATMPAEIRRITETFLHNPVKVE---- 206
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+S P S + + + Q +S K + LR+ +
Sbjct: 207 -------------VSKPASTAVTVTQFQISTGKES--------------HEKRELLRQLL 239
Query: 409 H-ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
A D + I F N R++ L+ G AA LHGD+ + AR L++F+ GE+ +L
Sbjct: 240 RDAKDLKNAIIFCNRKREVAILHKSLQKHGFGAAALHGDMDQSARMAALEQFRKGELPLL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFV 524
V ++++ARGLD+ E V N D+P Y HR GRTGR GR GT +SI ++ +
Sbjct: 300 VASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRLGTAISIVSPLDQKSILA 359
Query: 525 VKKMQKQ 531
++K+ Q
Sbjct: 360 IEKLIGQ 366
>gi|374261655|ref|ZP_09620233.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
gi|363537749|gb|EHL31165.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
Length = 584
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 190/421 (45%), Gaps = 64/421 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F + + LE F P+ +Q+ IP L+ D + + TG+GKT A+ LPIL
Sbjct: 6 TNFASFNFSDAINQALEDMKFTTPSPIQTQTIPLFLEGRDAIALAQTGTGKTAAFALPIL 65
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
K+ P NG G +A+I+AP+REL +Q+ + + L V L GG
Sbjct: 66 QKITP------NGQG-------TQALILAPTRELAIQVAEQFELLSARQHGTKVATLCGG 112
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
RQ + LR IVVGTPGRI + G L R +LDE DE+L F E +
Sbjct: 113 QEYGRQLKQLRAG-AQIVVGTPGRILDHIEKGTLQLSNLRTFILDEADEMLRMGFIEDIE 171
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ + P+ ++Q + SAT+P + + A ++ ++P I
Sbjct: 172 TIMAKL----------PE-------QKQIGLFSATMPHRIRQIANTYLNNPA------SI 208
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ S AT K +Q A H K D L R +
Sbjct: 209 EIRSETAT-------------------VKSIEQRFLFASGH--------QKPDALVRVLA 241
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ Q VI F+ ++ L+ +G++A +HGD+ + R + +F+ G + +LV
Sbjct: 242 VEEYQGVIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV V+N DLP D+ Y HR GRTGR GR G + E ++ ++
Sbjct: 302 TDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKESRLISSVE 361
Query: 530 K 530
+
Sbjct: 362 R 362
>gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
Length = 432
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/425 (27%), Positives = 201/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L++ L+++G PT +Q AIP + K +DV+ ++ TG+GKTLA+LLPIL
Sbjct: 3 SFKSLGVCDELIQALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+V TD+ + +I+AP+REL QI E K++ G + L+
Sbjct: 63 RV----------------HTDVHQEQVLIIAPTRELVKQISDEAKEI-GSILNVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIEAQLQQLGR-RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IENLISQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+S P S ++ ++ + DQ + Y T + K L +
Sbjct: 197 --------------MSKPASVTAEGKHVTLESIDQRV------YMMNT--EEKTQRLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IEEDNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|283785363|ref|YP_003365228.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
gi|282948817|emb|CBG88418.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
Length = 457
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/424 (28%), Positives = 187/424 (44%), Gaps = 65/424 (15%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L +
Sbjct: 10 LPAAQLANLRELGYLSMTPVQAAALPAILAGQDVRVQAKTGSGKTAAFGLGLLQHIDAAL 69
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
K+ +++++ P+REL Q+ E+++L + L GG Q
Sbjct: 70 FKT-------------QSLVLCPTRELADQVAGELRRLARSMPNTKILTLCGGQPFGAQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + G LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLEGLTTLVMDEADRMLDMGFSDAIDEVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DP+ ++ V L
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISARVQRDPVTIEIDAVDAL----- 213
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
PA++ + T Q K+ L+ + +
Sbjct: 214 -----------------------------PAIEQQFFETSTQGKIPRLQTLLSLHQPASC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L A G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNASGQSALALHGDLEQRERDMTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPI 536
LD+ +LVVN +L D + HR GRT R G RG +S C E + + L + +
Sbjct: 305 LDIKALELVVNFELAWDPEVHVHRIGRTARAGNRGLAISFCAPAEAQRANILAEMLQLTL 364
Query: 537 QACE 540
C+
Sbjct: 365 NWCD 368
>gi|414881885|tpg|DAA59016.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 711
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 197/424 (46%), Gaps = 60/424 (14%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
++ P SF G P +L+ ++R GF PT +Q+ + P ++N DVV + TGSGKTL
Sbjct: 143 DNVPTPITSFEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAMQNQDVVAIAKTGSGKTL 202
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
YLLP + L++ + NG +++AP+REL QI+ E K G S + +
Sbjct: 203 GYLLPGFMHIKRLQNSTRNGP---------TVLVLAPTRELATQILDEAVKF-GRSSRIS 252
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GGA + Q L + +VV TPGR+ +I K+ +LVLDE D +L
Sbjct: 253 CTCLYGGAPKGPQLRDLDRGV-DVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDM 311
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +IV+ + R RQT+M +AT P V R A D LL
Sbjct: 312 GFEPQIRKIVKEIPHR-----------------RQTLMYTATWPKEVRRIA-----DDLL 349
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V V G + +NS++ +H +T + K
Sbjct: 350 VHPVQVT-------------IGSVDSLVANSSI------------TQHVEIITPSE-KQR 383
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L + + + D+ + I T+++ D + + R A+ +HGD + R L +F++G
Sbjct: 384 RLEQILRSQDSGSKILIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLNQFRSG 443
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-ICEEPE 521
+LV +++ARGLD+ + +V+N D PT Y HR GRTGR G G + C++
Sbjct: 444 RSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDS 503
Query: 522 VFVV 525
+
Sbjct: 504 KYAA 507
>gi|330803884|ref|XP_003289931.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
gi|325079973|gb|EGC33549.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
Length = 501
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 195/419 (46%), Gaps = 64/419 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL P L+ ++ F P+ +Q IP I+ D++ + TGSGKT ++ +PIL
Sbjct: 7 FESLGLAPWLIRSCKQLNFKNPSNIQYNTIPEIINGRDIIASAKTGSGKTASFAIPIL-- 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
N S + AV++ P+REL +QI + + P + + V ++GG +
Sbjct: 65 -----------NLLSEDPYGVFAVVLTPTRELAVQIAEQFSAIGAPMNVQ-VSTVIGGID 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAG-KLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+Q L K +P I+V TPGR+A G K+ C+FLVLDE D LL +F +
Sbjct: 113 TVKQALILDK-RPHIIVATPGRLASHLTNGLKIALKFCKFLVLDEADRLLGEDFELEIAS 171
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+E+ L +RQT++ SAT+ N+
Sbjct: 172 ILEY---------------LPPPTQRQTLLFSATM-------------------TNNLKK 197
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
LES+ P S ++ KQ +P K Y V L+ +
Sbjct: 198 LESISLNSPFIFE---DNSKYDTVDTLKQEYIYMPAQAKDCYLVYLLKKHI--------- 245
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
Q+VI F+NN ++ L + A LH L + AR + LK FK+G+V+VL+
Sbjct: 246 --GQSVIVFINNCYSVEAVKGMLNKLDIPAVSLHSFLDQKARLSALKVFKSGKVKVLIAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++RGLD+ + ++V+N L S Y HR GRT R G+ G +S +V ++K ++
Sbjct: 304 DVASRGLDIPDVEMVINYKLSNSSKDYIHRVGRTARFGKSGRAISFITPHDVQLIKNIE 362
>gi|15221998|ref|NP_175911.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
gi|75333448|sp|Q9C718.1|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20
gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana]
gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana]
gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana]
gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
Length = 501
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 58/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E + P SF ++G P +LE +++ GF PT +QS P +K D++ + TGS
Sbjct: 88 TVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGS 147
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL+YLLP + V + ++G+G +++AP+REL +QI +E K G S
Sbjct: 148 GKTLSYLLPAIVHVN-AQPMLAHGDGPI-------VLVLAPTRELAVQIQQEASKF-GSS 198
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
K + GG + Q L+K IV+ TPGR+ ++ + + +LVLDE D
Sbjct: 199 SKIKTTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMMESNNTNLRRVTYLVLDEADR 257
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +IV H+ R +RQT+ SAT P V + ++ + +
Sbjct: 258 MLDMGFDPQIRKIVSHI-----------------RPDRQTLYWSATWPKEVEQLSKKFLY 300
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
+P V + GSS +L+A +A + + + KL
Sbjct: 301 NPYKV----------------------IIGSS---DLKANRAIRQIVDVISESQKYNKLV 335
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
++ + +D ++ F++ + +L G A +HGD + R L +
Sbjct: 336 KLLEDI------MDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSE 389
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
F++G+ ++ +++ARGLDV + V+N D P Y HR GRTGR G +GT +
Sbjct: 390 FRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 447
>gi|295674415|ref|XP_002797753.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280403|gb|EEH35969.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 486
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 191/392 (48%), Gaps = 52/392 (13%)
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
E F+ PT +QS + P + DV+ + TGSGKTLA+ +P + KV + NG S
Sbjct: 88 ENFSKPTPIQSVSWPFLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEI-----NGPRSSS 142
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ I AVI+ P+REL QI ++ K + + + GGA++ Q AL+K ++V
Sbjct: 143 R---ISAVIITPTRELATQIYDQLMKFT--PNNVGIACIYGGASKDDQRRALKK--ASVV 195
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V T GR+ + L ++LVLDE D +L F + + IV GA P K
Sbjct: 196 VATTGRLKDFQGDESLRLDKVKYLVLDEADRMLDKGFEQDIKDIV-------GAMPSSKK 248
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
RQT+M +AT P SV + A ++ D +++ G+LS
Sbjct: 249 --------RQTVMFTATWPISVRKLADTFMKDQVMITI--------------GDLS---- 282
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
S +N + KQ + L P K Y ++ L +R +A+D V+ F ++
Sbjct: 283 -SDIRANTRIKQIVEVLKPEDKEYRLLSLLNQ----YQRGKNAMDK--VLVFCLYKKEAT 335
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
+ ++G K A +HGD+ + R +L FK+G V +LV +++ARGLD+ LV+N
Sbjct: 336 RIERLIRSKGFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLN 395
Query: 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ P Y HR GRTGR G G +++ E
Sbjct: 396 VTFPLTVEDYVHRIGRTGRAGADGLAITMFTE 427
>gi|325192175|emb|CCA26630.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 627
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 198/438 (45%), Gaps = 52/438 (11%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E+ P F E+ L P + LE + PT VQ +IP L D++ + TGSGKT
Sbjct: 143 ENVPDPITIFTEVELGPEVCRNLELCKYMKPTPVQKYSIPIGLAGRDMMACAQTGSGKTG 202
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
+L P L+ + K +G G S +K+ A+I+AP+REL QI E KK +
Sbjct: 203 GFLFPTLAAMLREGAKPVDGAGSSQRKSHPAALILAPTRELASQIYDEAKKFCYCTGVAP 262
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
V L GGA RQ L + ++V TPGR+ ++ G++ G RFL+LDE D +L
Sbjct: 263 VV-LYGGAEVGRQVRELERG-CDLLVATPGRLVDLMERGRVSLSGIRFLILDEADRMLDM 320
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + R+VE M ERQT M SAT P + R A + D +
Sbjct: 321 GFEPQIRRLVEQE---------------DMPRERQTFMFSATFPREMQRLAADFLQDYIF 365
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
+ V GS+S KQ + + P K D
Sbjct: 366 LTVGRV-------------------GSASKD---VKQQIEFIEP-----------HDKED 392
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFKN 461
L R ++ + ++ F+ T++ D + +L R G A +HGD + R L F++
Sbjct: 393 YLVRFLNQVQEGLILVFVE-TKRGADYLEQLLCREGFPATSIHGDRTQREREAALNSFRS 451
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
G VLV +++ARGLD+ V+N DLP + Y HR GRTGR G G +S+ +
Sbjct: 452 GRTPVLVATDVAARGLDINGVTHVINFDLPNNIDDYVHRIGRTGRAGNLGHALSMMTDKN 511
Query: 522 VFVVKKMQKQLAVPIQAC 539
+ +++ L Q C
Sbjct: 512 RNISRELYALLVENSQEC 529
>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
Length = 1023
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 201/436 (46%), Gaps = 63/436 (14%)
Query: 92 KAAGVKKSLEIE----SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN 147
+ A KSL I P + SF + G P L+ + ++G+ PT +Q A+P +L
Sbjct: 209 EVADYMKSLAIRVSGFDVPRSIKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSG 268
Query: 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207
D++ + TGSGKT A++LP++ + E K+ V+ AP+REL QI
Sbjct: 269 RDIIGIAKTGSGKTAAFVLPMIVHI--------MDQPELEKEEGPIGVVCAPTRELAHQI 320
Query: 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267
E KK P + + V + GG ++ Q + L K IV+ TPGR+ ++ L
Sbjct: 321 YLEAKKFAKPYNLR-VAAVYGGVSKFDQFKEL-KAGCEIVIATPGRLIDLLKMKALKMFR 378
Query: 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF 327
+LVLDE D + F + IV + R +RQT++ SAT+P+
Sbjct: 379 ATYLVLDEADRMFDLGFEPQIRSIVGQI-----------------RPDRQTLLFSATMPY 421
Query: 328 SVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPA 387
V R AR DP+ V V S+N +++ + + L A
Sbjct: 422 KVERLAREILTDPIRVTVGQV--------------------GSANEDIK-QVVNVLLSDA 460
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
K + + KL +D V+ F ++ + +L RG + A LHGD
Sbjct: 461 EKMPWLLEKLPGMIDD----------GDVLVFAAKKARVDEIESQLNQRGFRIAALHGDK 510
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507
+ +R TL+KFK+G VLV +++ARGLD+ VVN D+ + + HR GRTGR
Sbjct: 511 DQASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRA 570
Query: 508 G-RRGTVVSICEEPEV 522
G + GT ++ + EV
Sbjct: 571 GDKDGTAYTLITQKEV 586
>gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
Length = 418
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 210/427 (49%), Gaps = 59/427 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL LLE++E G+ PT +Q AIP++L N DV+ + TG+GKT A+ LP+L
Sbjct: 2 SFTSLGLHSFLLEQVELLGYQTPTPIQLEAIPAVLANKDVMAGAQTGTGKTAAFALPLLH 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ L + N E + + +++ P+REL Q+ + ++V GGA
Sbjct: 62 R---LFEAHQIENPEPNNQ--VSVLVLTPTRELAQQVYKSFCDYGQALPLRSVVA-YGGA 115
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ + Q + +R+ ++V TPGR+ E+ + + LVLDE D +L F + R
Sbjct: 116 SINPQIDEIRQGVD-VLVATPGRLLELVMKDLVDVSQLKTLVLDEADRMLDMGFIIDIQR 174
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ R P+ ++QT+ SAT ++ + +++ DP+L++
Sbjct: 175 ILK----------RLPQ-------QKQTLFFSATFDDAIFKLSKTLLQDPVLIEV----- 212
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
N A+Q +Q +Y V K + K + + +
Sbjct: 213 --------------------DQRNTSAEQVEQI-------FYAVDK-EKKSGLISYLIGS 244
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ Q V+ F T++ D + K ++ G++ +HGD + AR L FK GE+R LV
Sbjct: 245 KNWQQVLIF-TRTKEGADRLAKEMKKDGIETQAIHGDKSQGARDRVLAAFKAGELRALVA 303
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ V+N +LP ++ Y HR GRTGR G+ G VS+ E E +++K ++
Sbjct: 304 TDVAARGLDIEALSYVINHELPYNAEDYIHRIGRTGRAGQSGLAVSLLSEKENYLLKDIE 363
Query: 530 KQLAVPI 536
K L P+
Sbjct: 364 KLLDTPL 370
>gi|402909693|ref|XP_003917545.1| PREDICTED: probable ATP-dependent RNA helicase DDX53 [Papio anubis]
Length = 632
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 189/401 (47%), Gaps = 64/401 (15%)
Query: 119 PLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG--PLK 176
P LL+ + R GF PT +QS A P IL+ D++ + TG+GKTL+YL+P V PL
Sbjct: 231 PDLLKSITRVGFVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHVDSQPLS 290
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+ NG G +++ P+REL +Q+ E K D K++ + GG NR Q
Sbjct: 291 REQRNGPG---------MLVLTPTRELALQVEAECSKY-SYKDLKSIC-ICGGRNRIGQR 339
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
E + K+ I++ TPGR+ ++ ++ +LV+DE D++L F + +I+
Sbjct: 340 EDISKD-VDIIIATPGRLNDLQMNNSVNLRSITYLVMDEADKMLDMEFEPKIMKIL---- 394
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
L + +RQT+M SAT P +V R ARS+ DP++V
Sbjct: 395 -------------LDVHPDRQTVMTSATWPDTVRRLARSYLKDPMIVYV----------- 430
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV-HALDAQT 415
GNL NL A +K VT + K + + H
Sbjct: 431 ---GNL-----------NLAAVNT-------VKQNIIVTTEEEKRALTQEFIEHMSPNDK 469
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
VI F+ R D +G+ LHG+ + + L+ F++G +++L+T +L AR
Sbjct: 470 VIMFVTQKRIADDLSSDFNIQGISVESLHGNSEQSDKERALEDFESGNIKILITTDLVAR 529
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
GLDV + V N D P + Y HR GR GR G+ GT V++
Sbjct: 530 GLDVNDVTHVYNYDFPWNIEEYVHRVGRIGRAGKTGTSVTL 570
>gi|319408783|emb|CBI82440.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
Length = 454
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 194/410 (47%), Gaps = 60/410 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N+F++LG+P LL E L G N P +Q AIP +LK D++ + TGSGKTLA+ LP+L
Sbjct: 6 NAFIKLGIPTLLTENLFIAGINKPKPIQKQAIPVMLKKRDILGIAQTGSGKTLAFGLPVL 65
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ L DK A+I+ P+REL +QI I +++ + ++GG
Sbjct: 66 SQILALGDKRYPKTA--------RALILVPTRELAVQIEESI-RMVAKGSHLSTCLILGG 116
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+R Q + + K +++ TPGR+ ++ + + RFLVLDE D +L F +
Sbjct: 117 VSRFAQIKRM-KTGVDVLIATPGRLMDLVSEKCIDLSQSRFLVLDEADRMLDMGFIRDVQ 175
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI A + +RQT + SAT+P ++ A++ ++P+ ++ ++
Sbjct: 176 RI-----------------AKLLHEKRQTALFSATMPREIVTLAKNLLNEPVKIE---IV 215
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P + AT + S S L D PAL T+ +H D + R
Sbjct: 216 P-QGTVATKITQKLYCVPTSEKKSVLNKFLTD----PALASVIIFTRTKHGADAVARS-- 268
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L G A +HG+ AR LK F+ G V +LV
Sbjct: 269 -----------------------LTKAGYSVAAIHGNKSHAARQRALKAFREGSVGILVA 305
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+++ARG+DV V+N DLP ++ +Y HR GRTGR G +++ +E
Sbjct: 306 TDIAARGIDVPGVSHVINYDLPDEAENYVHRIGRTGRNDTSGNAITLFDE 355
>gi|389605453|emb|CCA44371.1| putative ATP-dependent RNA helicase DDX17 DEAD box protein 17
[Neisseria meningitidis alpha522]
Length = 457
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 196/413 (47%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR + IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAGR-EIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|452751054|ref|ZP_21950800.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
gi|451961204|gb|EMD83614.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
Length = 481
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 205/419 (48%), Gaps = 62/419 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL LL + G++ PT++Q AIP +L DVV + TG+GKT +++LP++
Sbjct: 14 SFHQLGLSDELLGAVADSGYSDPTDIQRQAIPLVLMGKDVVGVAQTGTGKTASFVLPMI- 72
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D S G + ++I+AP+REL Q+ + +K G + K ++ L+GG
Sbjct: 73 ------DILSQGRSRARMP---RSLIIAPTRELADQVAQNFEKY-GKNSKLSMALLIGGV 122
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q++AL K +++ TPGR+ + GK+ G LV+DE D +L F + R
Sbjct: 123 SFGDQDKALAKGVD-VLIATPGRLLDQFERGKILLSGVDILVIDEADRMLDMGFIPDVER 181
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I +GR RQT++ SAT+P + + A + P ++ +
Sbjct: 182 ICGLLGR-----------------NRQTLLFSATMPPPIKKLADKFMSSPKQIEVERQ-- 222
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
SS+N N++ Q+ Q + P + K LR+ + +
Sbjct: 223 ------------------SSTNKNIE--QSVQHVGP-----------RGKRGALRKILGS 251
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ I F N R +K L+ G +A ++HGD+ + R T+ FK + VLV +
Sbjct: 252 EGMRSAIVFCNRKRDVKTLTDVLKDAGFRAGQIHGDMDQKDRMATMADFKADAINVLVAS 311
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV VVN D+P + Y HR GRTGR G G V++ + + +++ ++
Sbjct: 312 DVAARGLDVKGVSHVVNYDVPLHAEDYVHRIGRTGRAGATGVAVTLVTDSDTELLENIE 370
>gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
oral taxon 158 str. F0412]
Length = 432
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/425 (27%), Positives = 203/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L++ L+++G PT +Q +IP + K +DV+ ++ TG+GKTLA+LLPIL
Sbjct: 3 SFKTLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+V TD+ + +I+AP+REL QI E K++ G + L+
Sbjct: 63 RV----------------HTDVHQEQVLIIAPTRELIKQIADEAKEI-GAILNVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIEAQLQQLGR-RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IESLISQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+S P+S ++ ++ + DQ + Y + + K + L +
Sbjct: 197 --------------MSKPVSVTAEGKHVTLESIDQRV-------YMMNP-EEKTERLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IEEDNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|344923278|ref|ZP_08776739.1| superfamily II DNA/RNA helicase [Candidatus Odyssella
thessalonicensis L13]
Length = 413
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 203/420 (48%), Gaps = 63/420 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF E+GL L E + + G++ PT +Q+ AIP L+ D++ + TG+GKT A+LLP +
Sbjct: 2 SFSEIGLTSELAETVAKLGYDCPTPIQNTAIPLALQGKDILACAQTGTGKTAAFLLPTIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K S S AVI+AP+REL Q+ ++ KA+ +VGG
Sbjct: 62 II---KHSRSRHRLPS-------AVILAPTRELATQVYDNFLSYTAGTNLKAIS-VVGGE 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
S QE L+K I++ TPGR+ ++ GKL + +V+DE D +L F + +
Sbjct: 111 IISIQERILKKGVD-ILIATPGRLIDLFERGKLILTNVKVVVIDEADRMLDMGFMPEVDK 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + R RQT+M SAT+ + R ++S+ ++P
Sbjct: 170 IFSFLPRL-----------------RQTLMFSATISPEIKRISQSY----------QILP 202
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E S S A+ +QS+ + V ++Q +V LR+ + +
Sbjct: 203 CEI---------------KISRSAKTAETIEQSV-------FYVEEMQKRV-ALRKVLRS 239
Query: 411 L-DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + F N + + L+ G A LHGD+ + +R+ TL+ F+ G R+LVT
Sbjct: 240 HPSVEPTVIFCNKKKDVDILAKSLQRHGFSAQALHGDMDQRSRNETLENFRKGNYRILVT 299
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV+ LV+N D+P Y HR GRTGR G+ G + + E +K+++
Sbjct: 300 TDVAARGIDVSGITLVINFDVPVHEEDYVHRIGRTGRAGKNGVAIMFVTKGETKKLKRIE 359
>gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
Length = 472
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 199/421 (47%), Gaps = 66/421 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ +E G+ PT +Q+ AIP +L D++ + TG+GKT +++LP++
Sbjct: 3 FADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDI 62
Query: 172 VGPLKDKSSNGNGESGKKTDI--EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ SG++ + ++I+AP+REL Q+ +K G + L+GG
Sbjct: 63 LA------------SGRRRALMPRSLILAPTRELAAQVAENFEKY-GKQHDLQLALLIGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q +AL + +++ TPGR+ ++ GK+ +GC LV+DE D +L F +
Sbjct: 110 VQMGDQVKALNEGV-DVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIE 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I + EP RQT++ SAT+P + + A+ + +P ++
Sbjct: 169 TICSKLP--------EP---------RQTLLFSATMPPPIEKLAQKFLTNPKRIEVSR-- 209
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+S+N N+ A + K + K +TLR +
Sbjct: 210 ------------------AASTNENITA-------------FKIPVKAREKRETLRWLLA 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+T I F N +++ L++ G + E+HGD+ + +R L +FK GEV +LV
Sbjct: 239 NDHVETAIIFANRKTTVREINKSLQSHGFASGEIHGDMDQSSRIAELNRFKAGEVNILVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++ARGLD+ V N D P Y HR GRTGR G +G + + + + ++
Sbjct: 299 SDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVTDDDAEAIANVE 358
Query: 530 K 530
K
Sbjct: 359 K 359
>gi|365898214|ref|ZP_09436184.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. STM 3843]
gi|365421024|emb|CCE08726.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. STM 3843]
Length = 477
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 196/433 (45%), Gaps = 65/433 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSNLGLSDKVLAAVAATGYTAPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q V+E G K V L+G
Sbjct: 62 IL------------EKGRARARMPRTLILEPTRELAAQ-VKENFDRYGAGQKLNVALLIG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q+ L + +++ TPGR+ + + G L G LV+DE D +L F +
Sbjct: 109 GVSFGDQDSKLTRGV-DVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI + V RQT+ +AT+P + R ++ H+P V+
Sbjct: 168 ERICKLVP-----------------FTRQTLFFTATMPPEIRRVTEAFLHNPQKVEV--- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S PAT A QS PA + + K + LRR +
Sbjct: 208 ----SRPAT------------------TAVTVTQSQVPAGREAH------QKREVLRRLL 239
Query: 409 -HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
A D + I F N R + L+ G LHGD+ + AR L +F+ GE+ +L
Sbjct: 240 REAKDLKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARMAALDQFRKGELPLL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V ++++ARGLD+ E V N D+P Y HR GRTGR GR GT +SI P+ V
Sbjct: 300 VASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAISIVTPPDQKSVAA 359
Query: 528 MQKQLAVPIQACE 540
++K + I E
Sbjct: 360 IEKLIGQTIPRAE 372
>gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
Length = 484
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 207/433 (47%), Gaps = 59/433 (13%)
Query: 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166
+ SF ELGL P ++ L + GF PT +Q+ IP ++ D++ + TG+GKT A+ L
Sbjct: 15 YELTSFNELGLSPTVVATLTQLGFETPTPIQAQGIPVVMAGRDLIGLAQTGTGKTAAFGL 74
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
PI+ + +KD+ N + +I+AP+REL QI ++ + + K + Q+
Sbjct: 75 PIIELL--MKDERRPDNRTT------RTLILAPTRELVNQIGDNLRSFIRKTPIK-INQV 125
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
VGGA+ ++Q+ L + I+V TPGR+ ++ + + LVLDE D++L F
Sbjct: 126 VGGASINKQQLQLERGT-DILVATPGRLLDLISRNAISLRAVTHLVLDEADQMLDLGFIH 184
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I + V A+RQT++ SAT+P ++ A S+ ++P+ V+
Sbjct: 185 DLRKIAKMVP-----------------AKRQTLLFSATMPKAIADLAGSFLNNPVTVE-- 225
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
V P PG K AD+ ++ + V HK + L++
Sbjct: 226 -VSP--------PG-----------------KAADK----VEQYVHFVNGQNHKTELLKK 255
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ I F+ + + LE G A +HG+ + R LK F++G +R
Sbjct: 256 TLADHPDGRSIVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFRDGSIRT 315
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
L+ +++ARG+D+ V N DLP Y HR GRT R GR G ++ C E +++
Sbjct: 316 LIATDVAARGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEARLLR 375
Query: 527 KMQKQLAVPIQAC 539
+++ + + I
Sbjct: 376 DIERLMGIEISVA 388
>gi|146340507|ref|YP_001205555.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 278]
gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 278]
Length = 476
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 198/431 (45%), Gaps = 61/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G + +I+ P+REL Q V+E G K V L+GG
Sbjct: 62 IL-------EKGRARARMP---RTLILEPTRELAAQ-VKENFDRYGAGQKLNVALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ L + +++ TPGR+ + + G L G LV+DE D +L F + R
Sbjct: 111 SFGDQDAKLTRGV-DVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIER 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V P + RQT+ +AT+P + R ++ H+P V+
Sbjct: 170 ICKLV----------PFT-------RQTLFFTATMPPEIRRITDAFLHNPQKVE------ 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV-H 409
+S P + + + + LQ ++ K + LRR +
Sbjct: 207 -----------VSKPATTAVTVTQLQVPSGREA--------------HQKREVLRRLLRE 241
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A D + I F N R + L+ G LHGD+ + AR L +F+ GE+ +LV
Sbjct: 242 AKDLKNAIIFCNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARMAALDQFRKGELPLLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++ARGLD+ E V N D+P S Y HR GRTGR GR GT +SI P+ V ++
Sbjct: 302 SDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPPDQKSVAAIE 361
Query: 530 KQLAVPIQACE 540
K + I E
Sbjct: 362 KLIGQSIPTIE 372
>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein
[Photobacterium angustum S14]
Length = 427
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 207/440 (47%), Gaps = 60/440 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF L L P LL+ L G++ PT+VQ AIP LK DV+ + TG+GKT A+ LP+L
Sbjct: 2 SFQSLNLHPNLLKALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLLQ 61
Query: 171 KVGPLKDK----SSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
++ L + S+ + +I A+I+ P+REL Q+ I ++ K V
Sbjct: 62 RLMTLPSQAEQVSTAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIK-VAVA 120
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + + Q +AL I+V TPGR+ + G + VLDE D +L F
Sbjct: 121 YGGTSMNVQVKALNAG-AEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIV 179
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI++ M AERQT+ SAT V + A +P +V
Sbjct: 180 DIQRIMKR-----------------MPAERQTLFFSATFSKQVKKLAFDILTNPKMV--- 219
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
E PA N A+ +Q + P KH K + L
Sbjct: 220 -----EVTPA-----------------NTAAETVEQMVYPVDKH--------RKAELLAY 249
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ + + + V+ F T+Q D + K L G+KA+ ++GD + AR L FK+G+ R
Sbjct: 250 LIGSRNWRQVLVF-TKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGKTR 308
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ARGLD+ + + VVN D+P + Y HR GRTGR G G +++ E + +
Sbjct: 309 VLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLMSLDEEWAL 368
Query: 526 KKMQKQLA--VPIQACEFTE 543
K +++ L +P Q E E
Sbjct: 369 KAIEELLDSRLPQQWLEGYE 388
>gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 426
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 205/428 (47%), Gaps = 69/428 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L L+++G PT VQ AIP + DV+ Q+ TG+GKTLAYLLP+L++
Sbjct: 4 FDQLGISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLAR 63
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P G + +A+++AP+REL +QI R + L P V + GGA+
Sbjct: 64 IKP--------QGAAA-----QALVIAPTRELAIQIERVAEPLAQPLGIGTV-VIYGGAD 109
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ+E LR++ P +V+GTPGR+ + G L +VLDE DE+L F
Sbjct: 110 IERQKEKLRRS-PQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKMGF------- 161
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+E V GA ++ + AL SAT+P ++R + + +P ++
Sbjct: 162 IEDVETLLGAAAQDYQLAL----------FSATMPERIVRLTKRFMTNPAHIRLAG---- 207
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E++ + P+S L A +++ P L +C TK
Sbjct: 208 ETVTLAAIEQVVIPVSAGDKLDRLCASINEEA--PYLAMVFCATK--------------- 250
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
TR L + +L RG L GDL + RS L++F++ ++++L +
Sbjct: 251 ---------ERTRAL---MMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATD 298
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ V N DLP Y HR GRTGR G +G +++ + ++KM+
Sbjct: 299 IAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEAA 358
Query: 532 LAVPIQAC 539
L +AC
Sbjct: 359 L----KAC 362
>gi|109130176|ref|XP_001087519.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Macaca
mulatta]
Length = 592
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 191/401 (47%), Gaps = 64/401 (15%)
Query: 119 PLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG--PLK 176
P LL+ + R GF PT +QS A P IL+ D++ + TG+GKTL+YL+P V PL
Sbjct: 191 PDLLKSITRVGFVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHVDSQPLS 250
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+ NG G +++ P+REL +Q+ E K D K++ + GG NR Q
Sbjct: 251 REQRNGPG---------MLVLTPTRELALQVEAECSKY-SYKDLKSIC-ICGGRNRIGQI 299
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
E + K+ I++ TPGR+ ++ ++ +LV+DE D++L F + +I+
Sbjct: 300 EDISKDVD-IIIATPGRLNDLQMNNSVNLRSITYLVMDEADKMLDMEFEPQIMKIL---- 354
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
L + +RQT+M+SAT P +V R ARS+ DP++V
Sbjct: 355 -------------LDVHPDRQTVMISATWPDTVRRLARSYLKDPMIVYV----------- 390
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQT- 415
GNL NL A +K VT + K + + +
Sbjct: 391 ---GNL-----------NLAAVNT-------VKQNIIVTTEEEKRALTQEFIENMSPNDK 429
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
VI F++ R D +G+ LHG+ + + L+ F++G +++L+T +L AR
Sbjct: 430 VIMFVSQKRIADDLSSDFNIQGISVESLHGNSEESDKERALQDFESGNIKILITTDLVAR 489
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
GLDV + V N D P + Y HR GR GR G+ GT V++
Sbjct: 490 GLDVNDVTHVYNYDFPWNIEEYVHRVGRIGRAGKTGTSVTL 530
>gi|408529448|emb|CCK27622.1| ATP-dependent RNA helicase DeaD [Streptomyces davawensis JCM 4913]
Length = 917
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 196/412 (47%), Gaps = 55/412 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F ELG+ P E LE G P +Q +P L DV+ Q+ TG+GKTL + LP+L
Sbjct: 30 TTFRELGILPETAEALEAVGIVNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLL 89
Query: 170 SKVGPLKDKSSNGNGESGKKTDI-EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV- 227
+V D + G + TD +A++V P+REL Q+ + LL + V+ L
Sbjct: 90 ERVTVPADVEA-GRAKPEDLTDAPQALVVVPTRELCTQVTND---LLTAGKVRNVRVLAI 145
Query: 228 -GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q EAL+K ++VGTPGR+ +++ KL+ + LVLDE DE+L F
Sbjct: 146 YGGRAYEPQVEALKKGV-DVIVGTPGRLLDLAGQKKLNLKHIKALVLDEADEMLDLGFLP 204
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I+ + A RQT++ SAT+P +VI AR + P ++A
Sbjct: 205 DVEKIINM-----------------LPARRQTMLFSATMPGAVIGLARRYMSQPTHIRA- 246
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ P + +N+ +H Y + K + + R
Sbjct: 247 ----------------TAPDDEGVTVANIS------------QHVYRAHNMD-KPEMVAR 277
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R D +L+ RG + +HGDLG+ AR L+ F+NG+V V
Sbjct: 278 ILQADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDV 337
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
LV +++ARG+DV V+N P + Y HR GRTGR G GT +++ +
Sbjct: 338 LVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGNTGTAITLVD 389
>gi|418937787|ref|ZP_13491383.1| DEAD/DEAH box helicase domain protein [Rhizobium sp. PDO1-076]
gi|375055471|gb|EHS51723.1| DEAD/DEAH box helicase domain protein [Rhizobium sp. PDO1-076]
Length = 478
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 125/427 (29%), Positives = 205/427 (48%), Gaps = 61/427 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL ++ L GF PT +Q AIP +L+ D+V + TG+GKT A+ LP++
Sbjct: 18 NFNDLGLSKNIVATLSHLGFETPTPIQEKAIPLVLEGRDIVGLAQTGTGKTAAFGLPLIE 77
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ LKD+ N + +I+AP+REL QI ++ L K + Q+VGGA
Sbjct: 78 ML--LKDEKRPDNRTT------RTLILAPTRELVNQIGDNLRSYLRRLPLK-INQVVGGA 128
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +Q+ L K I+V TPGR+ ++ A + FLVLDE D++L F + +
Sbjct: 129 SIGKQQLQLEKGT-DILVATPGRLLDLIARNAISLRAVTFLVLDEADQMLDLGFIHDLRK 187
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V A+RQT++ SAT+P S+ A ++ ++P V
Sbjct: 188 ISKMV-----------------PAKRQTLLFSATMPSSIADLAATFLNNPAKVAV----- 225
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC-VH 409
T PG K AD+ +H + V K + L++ V
Sbjct: 226 ------TAPG-----------------KAADK----VEQHVHFVAGQNAKTEMLKKILVE 258
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
D ++++ F+ + + LE G A +HG+ + R LK F++GE+R L+
Sbjct: 259 NPDGRSIV-FLRTKHGAEKLMKHLEVNGFSVASIHGNKSQGQRERALKGFRDGEIRTLIA 317
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ V N DLP Y HR GRT R GR G ++ C E +++ ++
Sbjct: 318 TDVAARGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEGRLLRDVE 377
Query: 530 KQLAVPI 536
+ + + I
Sbjct: 378 RLMGIDI 384
>gi|355563283|gb|EHH19845.1| Putative ATP-dependent RNA helicase DDX53 [Macaca mulatta]
Length = 596
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 191/401 (47%), Gaps = 64/401 (15%)
Query: 119 PLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG--PLK 176
P LL+ + R GF PT +QS A P IL+ D++ + TG+GKTL+YL+P V PL
Sbjct: 195 PDLLKSITRVGFVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHVDSQPLS 254
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+ NG G +++ P+REL +Q+ E K D K++ + GG NR Q
Sbjct: 255 REQRNGPG---------MLVLTPTRELALQVEAECSKY-SYKDLKSIC-ICGGRNRIGQI 303
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
E + K+ I++ TPGR+ ++ ++ +LV+DE D++L F + +I+
Sbjct: 304 EDISKD-VDIIIATPGRLNDLQMNNSVNLRSITYLVMDEADKMLDMEFEPQIMKIL---- 358
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
L + +RQT+M+SAT P +V R ARS+ DP++V
Sbjct: 359 -------------LDVHPDRQTVMISATWPDTVRRLARSYLKDPMIVYV----------- 394
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQT- 415
GNL NL A +K VT + K + + +
Sbjct: 395 ---GNL-----------NLAAVNT-------VKQNIIVTTEEEKRALTQEFIENMSPNDK 433
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
VI F++ R D +G+ LHG+ + + L+ F++G +++L+T +L AR
Sbjct: 434 VIMFVSQKRIADDLSSDFNIQGISVESLHGNSEESDKERALQDFESGNIKILITTDLVAR 493
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
GLDV + V N D P + Y HR GR GR G+ GT V++
Sbjct: 494 GLDVNDVTHVYNYDFPWNIEEYVHRVGRIGRAGKTGTSVTL 534
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 196/437 (44%), Gaps = 66/437 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL P +L ++ +G++ PT +Q+ AIP +L D++ + TG+GKT A++LPIL
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV---REIKKLLGPSDKKAVQQLV 227
++ S+ S + A+I++P+REL QI K L P V
Sbjct: 62 RLKKFASTSA-----SPAMHPVRALILSPTRELADQIAVNAAAYTKYL-PLRSTVV---F 112
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG N Q + LR+ I++ TPGR+ + + + LVLDE D +L F
Sbjct: 113 GGMNMDPQTQELRRGV-EILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFIND 171
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ +I+ G PR RQT++ SAT + R A + HDP V+
Sbjct: 172 IRKIL-------GMLPRT----------RQTLLFSATFAPEIKRLAEEFMHDPQTVEV-- 212
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+++N Q +Q S+ K Y L
Sbjct: 213 --------------------ARQNSTNAQVEQLVFSVDSQRKRYL-----------LSHL 241
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ VI F L+ G A +HGD + AR TL FKNGEV+VL
Sbjct: 242 IRERQMGQVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVKVL 301
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE---VFV 524
V +++ARGLD++E VVN +LP Y HR GRTGR G G +S+ + E +
Sbjct: 302 VATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDEGKQLEA 361
Query: 525 VKKMQKQLAVPIQACEF 541
++K+ +Q P F
Sbjct: 362 IEKLTRQTLKPQPVSGF 378
>gi|182436152|ref|YP_001823871.1| ATP-dependent RNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178464668|dbj|BAG19188.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 731
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 183/379 (48%), Gaps = 51/379 (13%)
Query: 141 IPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI-EAVIVAP 199
+P L DV+ Q+ TG+GKTL + LP+L +V D + G + + TD +A++V P
Sbjct: 3 LPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEA-GRAKPEQLTDAPQALVVVP 61
Query: 200 SRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA 259
+REL Q+ ++ G V + GG Q EAL+K ++VGTPGR+ +++
Sbjct: 62 TRELCTQVTNDLLTA-GKVRNVRVLAIYGGRAYEPQVEALKKGV-DVIVGTPGRLLDLAG 119
Query: 260 AGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTI 319
KL R LVLDE DE+L F + RI+ + A+RQT+
Sbjct: 120 QRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITM-----------------LPAKRQTM 162
Query: 320 MVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQ 379
+ SAT+P +VI AR + P + A T P + G++ + +Q
Sbjct: 163 LFSATMPGAVISLARRYMSQPTHINA-----------TSPDD-----EGTTVKNTVQ--- 203
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
H Y + K + L R + A + F R D +LE RG
Sbjct: 204 ----------HVYRAHNMD-KPEMLARILQAEGRGLAMIFCRTKRTAADIAEQLEKRGFA 252
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGDLG+ AR L+ F+NG+V VLV +++ARG+DV VVN P D Y H
Sbjct: 253 SGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLH 312
Query: 500 RAGRTGRLGRRGTVVSICE 518
R GRTGR G +GT +++ +
Sbjct: 313 RIGRTGRAGAKGTAITLVD 331
>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 418
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 207/423 (48%), Gaps = 66/423 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +++++ G+ PT +Q AAIP++L D++ + TG+GKT A+ LP+L
Sbjct: 2 SFASLGLHQDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLLH 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--G 228
++ KD ++ I+ +++ P+REL Q+ L S K +Q +V G
Sbjct: 62 QILQAKDSNTTKG--------IQVLVLTPTRELAQQVH---ASFLKYSAKLPIQSVVAYG 110
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ + Q +ALR+ ++V TPGR+ E+ + + LVLDE D +L F +
Sbjct: 111 GASINMQLDALRQG-CDVLVATPGRLLELIMKNLIDLSKLQTLVLDEADRMLDMGFIIDI 169
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI++ + PKS RQT+ SAT + +++ DP L++
Sbjct: 170 QRILKKL----------PKS-------RQTLFFSATFNDEIFALSKTLLKDPQLIEV--- 209
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
++ N A Q +Q++ Y V + K L +
Sbjct: 210 ----------------------NSRNTTATQVEQTI-------YAVDQ-DRKSALLSFLI 239
Query: 409 HALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + Q V+ F T+Q D + K +E G+ +HGD + AR L FK G+VR L
Sbjct: 240 GSKNWQQVLIF-TRTKQGADELAKEMEKDGIATQSIHGDKSQGARDRVLADFKAGKVRAL 298
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ + VVN +LP ++ Y HR GRTGR G G +S+ E E +++
Sbjct: 299 VATDVAARGIDIEQLQYVVNHELPYNAEDYIHRIGRTGRAGSTGLAISLVSEKERYLLTD 358
Query: 528 MQK 530
++K
Sbjct: 359 IEK 361
>gi|411004563|ref|ZP_11380892.1| ATP-dependent RNA helicase [Streptomyces globisporus C-1027]
Length = 757
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 184/387 (47%), Gaps = 51/387 (13%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
P +Q +P L DV+ Q+ TG+GKTL + LP+L +V D + G + TD
Sbjct: 3 PFPIQELTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEA-GRARPEQLTDA 61
Query: 193 -EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251
+A++V P+REL Q+ ++ G V + GG Q EAL+K ++VGTP
Sbjct: 62 PQALVVVPTRELCQQVTNDLL-TAGKVRNVRVLAIYGGRAYEPQVEALKKGV-DVIVGTP 119
Query: 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALA 311
GR+ +++ KL R LVLDE DE+L F + RI+
Sbjct: 120 GRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITM----------------- 162
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSS 371
+ A+RQT++ SAT+P +VI AR + P + A T P + G++
Sbjct: 163 LPAKRQTMLFSATMPGAVISLARRYMSQPTHINA-----------TSPDD-----EGTTV 206
Query: 372 NSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVF 431
+ +Q H Y + K + L R + A + F R D
Sbjct: 207 KNTVQ-------------HVYRAHNM-DKPEMLARILQAEGRGLAMIFCRTKRTAADIAE 252
Query: 432 KLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP 491
+LE RG + +HGDLG+ AR L+ F+NG+V VLV +++ARG+DV VVN P
Sbjct: 253 QLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVVNYQSP 312
Query: 492 TDSIHYAHRAGRTGRLGRRGTVVSICE 518
D Y HR GRTGR G +G +++ +
Sbjct: 313 EDEKTYLHRIGRTGRAGAKGIAITLVD 339
>gi|365988008|ref|XP_003670835.1| hypothetical protein NDAI_0F02740 [Naumovozyma dairenensis CBS 421]
gi|343769606|emb|CCD25592.1| hypothetical protein NDAI_0F02740 [Naumovozyma dairenensis CBS 421]
Length = 561
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 198/417 (47%), Gaps = 62/417 (14%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P SF E G P +L+ ++ EGF+ PT +Q P L D++ + TGSGKTL+Y
Sbjct: 114 PKPITSFDEAGFPDYVLKEVKAEGFDAPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYC 173
Query: 166 LPILSKVG--PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
LP + + PL S G+G +++AP+REL +QI +E K G S +
Sbjct: 174 LPGIVHINAQPLL---SPGDGPI-------VLVLAPTRELAVQIQKECSKF-GHSSRIRN 222
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283
+ GG R +Q L + IV+ TPGR+ ++ GK + +LVLDE D +L
Sbjct: 223 TCVYGGVPRGQQIRDLSRGS-EIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMG 281
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
F + +IV+ + R +RQT+M SAT P V + A + +DP+ V
Sbjct: 282 FEPQIRKIVDQI-----------------RPDRQTLMWSATWPKEVQQLASDYLNDPIQV 324
Query: 344 QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT 403
Q G + S+S++ Q L L + +L ++T
Sbjct: 325 QV------------------GSLELSASHNIAQ-------LVEVLSEFEKRDRLLKHLET 359
Query: 404 LRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNG 462
+ D ++ I +T+++ D + K L G A +HGD + R L +F+ G
Sbjct: 360 A-----SEDKESKILIFASTKRMCDEITKMLREDGWPALAIHGDKDQRERDWVLGEFRAG 414
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
++V +++ARG+DV + V+N D+P + Y HR GRTGR G +GT +S E
Sbjct: 415 NSPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGAKGTAISFFTE 471
>gi|395790870|ref|ZP_10470329.1| hypothetical protein MEC_00320 [Bartonella alsatica IBS 382]
gi|395409166|gb|EJF75765.1| hypothetical protein MEC_00320 [Bartonella alsatica IBS 382]
Length = 470
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 200/411 (48%), Gaps = 62/411 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F +LGLP LL++ L G + P +Q AIP +LK HD++ + TGSGKTLA+ LPIL
Sbjct: 17 NVFAKLGLPALLIKNLLIAGMSKPKPIQEQAIPVMLKGHDILGIAQTGSGKTLAFSLPIL 76
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
S++ L DK S A+I+AP+REL +QI E + + + L GG
Sbjct: 77 SQILALGDKRSPKTAR--------ALILAPTRELTVQI-NETIRAVAKGTHLSTCLLFGG 127
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+R +Q + + + +++ TPGR+ ++ + RFLVLDE D +L F +H
Sbjct: 128 VSRLKQIKRM-ETGVDVLIATPGRLRDLVCEKYVDLSQSRFLVLDEADRMLDMGF---IH 183
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I E A + ERQT + SAT+P +I + DP+ ++
Sbjct: 184 DIRE--------------IAKLLHQERQTALFSATMPKEIIALTKFLLEDPIKIEI---- 225
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ G++ A + Q L YCV + K L + +
Sbjct: 226 ---------------VLQGTT------AAEITQKL-------YCVPTSEKK-KVLGKLLA 256
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+VI F T+ DAV + AR G A +HG+ + AR + LK F+ V+VLV
Sbjct: 257 NPAFTSVIVF-TRTKYGADAVTRSLARMGYLVATIHGNKSQSARQSALKAFRERTVQVLV 315
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+++ARG+D+ V+N DLP ++ Y HR GRTGR G G +++ +E
Sbjct: 316 ATDIAARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEAITLFDE 366
>gi|365887517|ref|ZP_09426356.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. STM 3809]
gi|365336888|emb|CCD98887.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 198/431 (45%), Gaps = 61/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G + +I+ P+REL Q V+E G K V L+GG
Sbjct: 62 IL-------EKGRARARMP---RTLILEPTRELAAQ-VKENFDRYGVGQKLNVALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ L + +++ TPGR+ + + G L G LV+DE D +L F + R
Sbjct: 111 SFGDQDAKLTRGV-DVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIER 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V P + RQT+ +AT+P + R ++ H+P V+
Sbjct: 170 ICKLV----------PFT-------RQTLFFTATMPPEIRRITDAFLHNPQKVE------ 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV-H 409
+S P + + + + LQ ++ K + LRR +
Sbjct: 207 -----------VSKPATTAVTVTQLQVPSGREA--------------HQKREVLRRLLRE 241
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A D + I F N R + L+ G LHGD+ + AR L +F+ GE+ +LV
Sbjct: 242 AKDLKNAIIFCNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARMAALDQFRKGELPLLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++ARGLD+ E V N D+P S Y HR GRTGR GR GT +SI P+ V ++
Sbjct: 302 SDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPPDQKSVAAIE 361
Query: 530 KQLAVPIQACE 540
K + I E
Sbjct: 362 KLIGQSIPTIE 372
>gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
Length = 410
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 195/406 (48%), Gaps = 65/406 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
L P L L G++ PT +Q AIP +L DV+ + TG+GKT A+ LP++ ++
Sbjct: 9 LHPTLQHTLNALGYSDPTAIQQQAIPHVLDGKDVMGAAQTGTGKTAAFALPVIHQL---- 64
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
E G K ++V P+REL Q+ ++ + + K V L GGAN + Q+
Sbjct: 65 -------LERGVKGAARVLVVTPTRELAQQVYEKVVEYSQHTSLKCV-ALYGGANINPQK 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
L K KP I+VGTPGR+ + G L + L+LDE D +L F + R+++
Sbjct: 117 NQLTK-KPEIIVGTPGRLLDHLHIGTLTLNSLDTLILDEADRMLDMGFISDIKRLMK--- 172
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
+ PK+ RQT+ SAT P V+ A
Sbjct: 173 -------KMPKT-------RQTLFFSATYPKQVVDLAYRL-------------------- 198
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
LS P+ S +N A+ +Q + P K + K + L + + + Q V
Sbjct: 199 -----LSNPVRIEVSTANSTAETVNQLVHPVDK--------KRKRELLSYLIGSRNLQQV 245
Query: 417 IAFMNNTRQLKDAVF-KLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+ F TRQ +A+ +L+ G+KA +HG+ + AR+ L+ FK+GEVRVLV +++AR
Sbjct: 246 LVFA-KTRQSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGEVRVLVATDVAAR 304
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
GLD+ D V N +LP Y HR GRTGR G+ G +S+ E
Sbjct: 305 GLDIPSLDTVFNYELPHQPEDYIHRIGRTGRAGKPGMAISLVSREE 350
>gi|163789335|ref|ZP_02183776.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
ALC-1]
gi|159875403|gb|EDP69466.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
ALC-1]
Length = 411
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 207/430 (48%), Gaps = 67/430 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL L + +E G+ PT VQ AIP IL DV++ + TG+GKT A+ LPIL
Sbjct: 2 SFKDLGLIKPLQKAIEASGYVEPTLVQQRAIPPILDKKDVIVSAQTGTGKTAAFALPILQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ +D + GKK I+A+I++P+REL +QI + K ++ +++ + GG
Sbjct: 62 QLFDQQDAP-----KRGKK--IKALIISPTRELAVQIQQNFKTYAQFTNLRSL-VIFGGT 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + L+K I+V TPGR+ ++ ++ VLDE D +L+ F +
Sbjct: 114 SIEPQIDVLKKG-IDILVATPGRLLDLHKQDYVNLDHIETFVLDEADLMLAMGFIDD--- 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
V+ + R N +QT++ SAT+P+ + + A DP + +V P
Sbjct: 170 -VKKIERLCPEN-------------KQTLLFSATIPYKIEQLASGILKDP---ERIDVTP 212
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S+ AK Q L YY K + + C+H
Sbjct: 213 TRSV----------------------AKDVSQIL------YYV-----PKRNKIELCLHL 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEA----RGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ T+ + R+ K V KLE G +HGD + R T L KFKNG V+V
Sbjct: 240 M-RNTIKGNVLIFRRTKFGVNKLEQTLLKNGYTVDSIHGDKNQSDRQTALNKFKNGYVKV 298
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
L+ +++ARG+D+ E D V N D+P + Y HR GRTGR G G ++C E VK
Sbjct: 299 LIATDVAARGIDIDELDNVFNFDMPNQAETYVHRIGRTGRAGNIGKAYAMCSADEKSYVK 358
Query: 527 KMQKQLAVPI 536
+++ + V I
Sbjct: 359 IIEQYINVQI 368
>gi|418290850|ref|ZP_12902952.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM220]
gi|372200879|gb|EHP14878.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM220]
Length = 457
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 195/413 (47%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLHR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K++ L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KLNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|422802922|ref|ZP_16851414.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863]
Length = 398
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L K+
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAITAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|334343993|ref|YP_004552545.1| DEAD/DEAH box helicase [Sphingobium chlorophenolicum L-1]
gi|334100615|gb|AEG48039.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
L-1]
Length = 454
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 116/430 (26%), Positives = 201/430 (46%), Gaps = 62/430 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL LL+ + G++ PT +Q+ AIP +L D++ + TG+GKT +++LP++
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI- 60
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D ++G + ++I+ P+REL Q+ +K G K + L+GG
Sbjct: 61 ------DILAHGRARALMP---RSLILEPTRELAAQVAENFEKY-GKYHKLNMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL K +++ TPGR+ ++ GK+ +GC LV+DE D +L F +
Sbjct: 111 QMGDQLKALEKGVD-VLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + A+RQT++ SAT+P + + A + +P ++
Sbjct: 170 ICTK-----------------LPAQRQTLLFSATMPPVIKKLADRFLSNPKSIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT N++ + S + K + LR + A
Sbjct: 208 --ARPATASTNITQRLVKVDS--------------------------RKKREALRAMLEA 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + + F N ++D L+ G K+ E+HGD+ + AR L++F+ G V +LV +
Sbjct: 240 EDVLSAVIFCNRKTTVRDLNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNILVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ V N D P Y HR GRTGR G +G + + + +QK
Sbjct: 300 DVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTADDAEAIDNIQK 359
Query: 531 QLAVPIQACE 540
+ I+ +
Sbjct: 360 LIKQQIETID 369
>gi|435851473|ref|YP_007313059.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
gi|433662103|gb|AGB49529.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
Length = 534
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 195/410 (47%), Gaps = 70/410 (17%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPIL 169
SF L +L+ LE++GF PT +Q IP ++K + D++ Q+ TG+GKT A+ +PI+
Sbjct: 6 SFKAFNLSQSMLDVLEKKGFFKPTPIQIHVIPPLMKGDRDIIGQAQTGTGKTAAFGIPII 65
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
K+ K++ G+ I+A+++ P+REL +Q+ E++ L G D V L GG
Sbjct: 66 EKL-----KANTGS--------IQALVLTPTRELALQVSLELESLKGDKDITVVP-LYGG 111
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q + L K+ IVVGTPGRI + G + +LVLDE DE+L+ F E
Sbjct: 112 QTIKNQLKIL-KSGADIVVGTPGRIIDHLKKGNIKLDSISYLVLDEADEMLNMGFIEE-- 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW--GHDPLLVQAKN 347
V+ V R + N +Q ++ SAT+P +++ A+ HD +
Sbjct: 169 --VKEVFRSTNEN-------------KQMLLFSATMPTPILKLAKKHMRNHDFV------ 207
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
S S +L A+ DQ Y + K + L R
Sbjct: 208 ---------------------SVSQDDLIAEFTDQ--------VYLELAEEQKFEALCRL 238
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + F N D +L RG A L+GDL + R LKKF+ + +L
Sbjct: 239 IDINYGFYGLVFCNTKSDTIDISRRLTERGYAADALNGDLTQDQREGILKKFRTQGLNIL 298
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
V +++ARG+DV E V+N LP D+ Y HR GRTGR G++GT ++
Sbjct: 299 VATDVAARGIDVLELTHVINYSLPQDAESYVHRIGRTGRAGKQGTAITFV 348
>gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
Length = 419
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 202/428 (47%), Gaps = 66/428 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ F LGL LL L GF PT+VQ +IP IL DV+ + TG+GKT A+ LPI
Sbjct: 2 STEFESLGLSQPLLTTLNTLGFTTPTQVQQQSIPHILLGKDVLAGAQTGTGKTAAFGLPI 61
Query: 169 LSKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
+ ++ ++D N D+ A+++ P+REL Q+ + + + K V
Sbjct: 62 IQQLIQSESVRDPQGN---------DVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTA 112
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
GG + + Q L + ++V TPGR+ + + +LVLDE D +L F
Sbjct: 113 Y-GGTSINVQTRNLHQGCDILIV-TPGRLIDHMFCKNVSLAKTEYLVLDEADRMLDMGFM 170
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ RI++ NP ERQT+ SAT + A DP+ +Q
Sbjct: 171 PDIQRILKRF------NP-----------ERQTLFFSATFDKRIKNIAYKLQKDPIEIQV 213
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
S SN A+ Q + P K + K + L
Sbjct: 214 -------------------------SPSNSTAETVKQMVYPVDK--------KRKAELLA 240
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+ + + Q V+ F T+Q DA+ K L+ G+KAA ++GD + AR L FK+G+V
Sbjct: 241 YLIGSRNWQQVLVF-TKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGKV 299
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
R L+ +++ARGLD+ + + VVN D+P + Y HR GRTGR G+ G VS+ + E ++
Sbjct: 300 RALIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSQDEHYL 359
Query: 525 VKKMQKQL 532
++ +++ L
Sbjct: 360 LEAIERLL 367
>gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group]
Length = 2897
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 189/421 (44%), Gaps = 67/421 (15%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E+ P +F G PP +L+ + GF PT +Q+ P L+N D+V + TGSGKTL
Sbjct: 596 ENVPPPFMTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL 655
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
YL+P + ++ G +++AP+REL QI E K G S + +
Sbjct: 656 GYLIPAFIHLRRYQNNPMLG---------PTVLVLAPTRELASQIQDEAVKF-GRSSRVS 705
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GG ++ Q L + IVV TPGR+ +I K+ H FLVLDE D +L
Sbjct: 706 CTCLYGGTSKGLQLRELERGA-DIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDM 764
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +IV+ + R RQT+M +AT P V + A DP+
Sbjct: 765 GFEPQIRKIVDEIPRN-----------------RQTLMYTATWPKEVTKIAGDLLKDPVQ 807
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V N+ ++ + A N Q + +PP +D
Sbjct: 808 V---NIGSIDELVA-----------------NKSITQYVEVVPP--------------LD 833
Query: 403 TLRRCVHALDAQT----VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
RR L AQ VI F + T+++ D + + R AA +HGD + R L +
Sbjct: 834 KQRRLEQILRAQERGSKVIIFCS-TKKMCDQLARDIGRSFGAASIHGDKSQAERDNVLNQ 892
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
F+ G +LV +++ARGLD+ + +V+N D PT Y HR GRTGR G G +
Sbjct: 893 FRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFS 952
Query: 519 E 519
E
Sbjct: 953 E 953
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 196/437 (44%), Gaps = 66/437 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL P +L ++ +G++ PT +Q+ AIP +L D++ + TG+GKT A++LPIL
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV---REIKKLLGPSDKKAVQQLV 227
++ S+ S + A+I++P+REL QI K L P V
Sbjct: 62 RLKKFASTSA-----SPAMHPVRALILSPTRELADQIAVNAAAYTKYL-PLRSTVV---F 112
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG N Q + LR+ I++ TPGR+ + + + LVLDE D +L F
Sbjct: 113 GGMNMDPQTQELRRGV-EILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFIND 171
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ +I+ G PR RQT++ SAT + R A + HDP V+
Sbjct: 172 IRKIL-------GMLPRT----------RQTLLFSATFAPEIKRLAEEFMHDPQTVEV-- 212
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+++N Q +Q S+ K Y L
Sbjct: 213 --------------------ARQNSTNAQVEQLVFSVDSQRKRYL-----------LSHL 241
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ VI F L+ G A +HGD + AR TL FKNGEV+VL
Sbjct: 242 IRERQMGQVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVKVL 301
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE---VFV 524
V +++ARGLD++E VVN +LP Y HR GRTGR G G +S+ + E +
Sbjct: 302 VATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDEGKQLEA 361
Query: 525 VKKMQKQLAVPIQACEF 541
++K+ +Q P F
Sbjct: 362 IEKLTRQTLKPQPVSGF 378
>gi|412987541|emb|CCO20376.1| predicted protein [Bathycoccus prasinos]
Length = 843
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 205/440 (46%), Gaps = 63/440 (14%)
Query: 96 VKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSY 155
++++ + F+A F +L L L E+ G+ PT +Q+A IP L DV ++
Sbjct: 196 TERAVAKDGTTFSAQCFNDLHLSRPLCRACEKLGYATPTPIQAAIIPIALTGRDVCGRAQ 255
Query: 156 TGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL 215
TGSGKT A+ LP+L ++ + + I VI+ P+REL +Q + I++L
Sbjct: 256 TGSGKTAAFALPLLERMLHRPKNAVSA---------IHVVIMVPTRELAVQCAQMIQRL- 305
Query: 216 GPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR---FLV 272
G V +VGG + RQ ALR+ +P IVV TPGR+ I H+ G +V
Sbjct: 306 GEYTNVQVATIVGGLSMERQAAALRQ-RPEIVVATPGRL--IDHVRNTHSFGFEDVAAVV 362
Query: 273 LDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRA 332
LDE D LL F E + IV ++ R +RQT++ SAT+ +V
Sbjct: 363 LDEADRLLEMGFLEEIKEIVRNMPR-----------------QRQTLLFSATLTSAVEEL 405
Query: 333 ARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYY 392
A +P + A ++ T P L+ + +K +
Sbjct: 406 ASLSMRNPARLSADSL-------GTTPMTLTEEIV-------------------KIKPQF 439
Query: 393 CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLAR 452
K H + L R + + I F Q L +KA ELHGD+ + R
Sbjct: 440 VAKKEAHLLSLLSR---SFKGKETIVFAKTKVQAHRLKIVLGLSNIKACELHGDMTQTQR 496
Query: 453 STTLKKFK-NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG 511
L+ F+ N E +++V +++ARGLD+A DLVV+ D P + Y HR GRT R GR+G
Sbjct: 497 LAALEDFRSNAETKIMVATDVAARGLDIASVDLVVSYDAPKNVASYLHRVGRTARAGRKG 556
Query: 512 TVVSICEEPEVFVVKKMQKQ 531
++ EE + +VK +QK+
Sbjct: 557 VAITFMEEYDRALVKTLQKR 576
>gi|389794564|ref|ZP_10197716.1| ATP-dependent RNA helicase DbpA [Rhodanobacter fulvus Jip2]
gi|388432370|gb|EIL89384.1| ATP-dependent RNA helicase DbpA [Rhodanobacter fulvus Jip2]
Length = 459
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 186/408 (45%), Gaps = 64/408 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF L L P LL +E G+ T VQ+ ++P +L+ DV+ Q+ TGSGKT A+ L +L
Sbjct: 2 TSFTTLPLKPALLASVETLGYTEMTPVQAQSLPPMLEGRDVIAQAQTGSGKTAAFGLSLL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ ++A+++ P+REL Q+ + I+KL + L GG
Sbjct: 62 QAI-------------DVDTIRLQALVLCPTRELADQVSKAIRKLAANIPNVKLLTLCGG 108
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q +L + P IVVGTPGR+ E LH G + LVLDE D +L F EA+
Sbjct: 109 MPLGPQLASL-THDPHIVVGTPGRVQEHLKRQSLHGGGIKVLVLDEADRMLDMGFTEAID 167
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ + + QT++ SAT P + ++ +DP+ V
Sbjct: 168 DIIGRIAK-----------------HHQTLLFSATYPEEIRAVSQRVQNDPVEV------ 204
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ P AD+ PA++ + + K+D L + +
Sbjct: 205 -----------TVEAP--------------ADEK--PAIEQRFHEVEPAQKIDALTQLLG 237
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A+ + F N R++ +L+ RG A LHGD+ + R L +F N VLV
Sbjct: 238 GAHAEQALVFCNMRREVDAVAQELDRRGFSALALHGDMEQRDRDEVLVRFANHSCAVLVA 297
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARGLD+ LVV+ D+ D + HR GRTGR G G +++C
Sbjct: 298 TDVAARGLDIVALPLVVSYDIAHDPETHTHRVGRTGRAGESGLAITLC 345
>gi|408399615|gb|EKJ78713.1| hypothetical protein FPSE_01081 [Fusarium pseudograminearum CS3096]
Length = 544
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 203/444 (45%), Gaps = 63/444 (14%)
Query: 105 APFAANS-FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
AP N+ F L + P L++ LE PT +Q IP ILK D + S TGSGKT+A
Sbjct: 107 APTDPNTTFSALNVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMA 166
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ +PIL K S T I AV++ P+REL +QI + K + P KA+
Sbjct: 167 FAVPILQKW-------------SEDPTAIFAVVLTPTRELALQIFEQFKAISSPQSLKAI 213
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDEL 279
LV G + R + +P +++ TPGR+A+ I +G+ G R++VLDE D L
Sbjct: 214 --LVTGGSDMRTQAIEIGKRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDEADRL 271
Query: 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
L+ +M VE E S L ERQT++ +AT+
Sbjct: 272 LNATGPGSMLPDVE-----------ECLSVLPPATERQTLLFTATI-------------- 306
Query: 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC---VTK 396
V L+ MP PG P+ ++ A +P LK Y VT
Sbjct: 307 -----TPEVRALKDMP-IKPGK--QPVFVCEVDTQTLA------IPATLKQMYIKVPVTH 352
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
+H + T +D +TVI F N T L + LH L + R L
Sbjct: 353 KEHYLHTFLLTEANVD-KTVILFCNRTSTADYLHHLLRMLEHRVTSLHSKLPQRQRIDNL 411
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+F+ R+LV +++ARGLD+ E LV+N DLP D Y HR GRT R GR+G VS
Sbjct: 412 ARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGEAVSF 471
Query: 517 CEEPEVFVVKKMQKQLAVPIQACE 540
+ +V + ++K++ ++A E
Sbjct: 472 VGQRDVELALTIEKRVGRDMEAWE 495
>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
49030]
Length = 459
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 198/431 (45%), Gaps = 63/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LG+ ++E L G P +Q+ +P L D++ Q+ TG+GKTL + +P+L
Sbjct: 5 TFADLGVEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQ 64
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK---KLLGPSDKKAVQQLV 227
++ D+ S G + + A++V P+REL Q+ +++ + PS + +
Sbjct: 65 RI---LDEQSREQGRAPR-----ALVVVPTRELAHQVADDLRVASRTFSPS----IVTIY 112
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + Q AL K+ +VVGTPGR+ ++ L+ V DE DE+L F
Sbjct: 113 GGKDFEPQIRAL-KDGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPD 171
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ +IV A+ A+RQT++ SAT+P VI AR +
Sbjct: 172 VEKIVA-----------------ALPAKRQTMLFSATMPGQVIALARRY----------- 203
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
T P ++ + +S +++ KQ Y K + + R
Sbjct: 204 --------MTQPTHIRATQASDTSTTSVNTKQ-----------YVYRAHSMDKTELVGRI 244
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ A I F R +L+ARG +A LHGDL + R LK+F++G VL
Sbjct: 245 LRAEGRGRTIIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTDVL 304
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ + V+N P D Y HR GRTGR G G V++ + +V K
Sbjct: 305 VATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGNTGIAVTLIDWEDVAKWKL 364
Query: 528 MQKQLAVPIQA 538
+ + L + A
Sbjct: 365 INRTLGLDFDA 375
>gi|66826815|ref|XP_646762.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
gi|74897375|sp|Q55BR9.1|DDX49_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx49; AltName:
Full=DEAD box protein 49
gi|60474611|gb|EAL72548.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
Length = 508
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 201/421 (47%), Gaps = 64/421 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL L+ ++ GF P+ +Q+ IP ILK D++ + TGSGKT ++ +PIL+
Sbjct: 5 TFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILN 64
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ S + G + AVI+ P+REL +QI + + P + ++GG
Sbjct: 65 QL------SEDPYG-------VFAVILTPTRELAVQIGEQFNAIGAPMNVNC-SVVIGGI 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ Q L K +P I+V TPGR+A ++ K+ C+FLVLDE D LL +F +
Sbjct: 111 DNVTQALILDK-RPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIA 169
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+EH+ P E +RQT++ SAT+ KN+
Sbjct: 170 SILEHLP------PPE---------KRQTLLFSATM-------------------TKNLT 195
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
L+S+ P S ++ KQ +P K Y V L+
Sbjct: 196 KLDSIALNKPFIFE---DNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKH--------- 243
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + I F+NN ++ L + + LH L + +R LK FK+G+V+VLV
Sbjct: 244 --EGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++RGLD+ + +V+N L S Y HR GRT R GR G +S +V ++K ++
Sbjct: 302 TDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIE 361
Query: 530 K 530
+
Sbjct: 362 E 362
>gi|357112553|ref|XP_003558073.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like
[Brachypodium distachyon]
Length = 767
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 196/437 (44%), Gaps = 65/437 (14%)
Query: 92 KAAGVKKSLEIE----SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN 147
+ A KSL I P +F + G P L+ + ++G+ PT +Q A+P +L
Sbjct: 192 EVADYMKSLAIRVSGFDVPRPVKNFADCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSG 251
Query: 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207
D++ + TGSGKT A++LP++ + E K+ VI AP+REL QI
Sbjct: 252 RDIIGIAKTGSGKTAAFVLPMIVHI--------MDQPELEKEEGPIGVICAPTRELAHQI 303
Query: 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267
E KK P + + V + GG ++ Q + L K IVV TPGR+ ++ L
Sbjct: 304 YLEAKKFAKPYNLQ-VAAVYGGVSKFDQFKEL-KAGCEIVVATPGRLIDLLKMKALKMFR 361
Query: 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF 327
+LVLDE D + F + IV + R +RQT++ SAT+P+
Sbjct: 362 ATYLVLDEADRMFDLGFEPQIRSIVGQI-----------------RPDRQTLLFSATMPY 404
Query: 328 SVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLP-P 386
V R AR DP+ V G ++N KQ LP
Sbjct: 405 KVERLAREILSDPIRVTV----------------------GQVGSANEDIKQVVNVLPSD 442
Query: 387 ALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
A K + + K+ +D V+ F ++ + +L RG K A LHGD
Sbjct: 443 AEKMPWLIEKMPGMIDD----------GDVLVFAAKKARVDEIENQLNQRGFKVAALHGD 492
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGR 506
+ +R TL+ FK+G VLV +++ARGLD+ VVN D+ + + HR GRTGR
Sbjct: 493 KDQASRMETLQNFKSGTYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGR 552
Query: 507 LG-RRGTVVSICEEPEV 522
G + GT ++ + E
Sbjct: 553 AGDKDGTAYTLITQKET 569
>gi|385328676|ref|YP_005882979.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
gi|308389528|gb|ADO31848.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
Length = 457
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 195/413 (47%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ KS S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERL-----KSYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|406979406|gb|EKE01199.1| hypothetical protein ACD_21C00193G0001 [uncultured bacterium]
Length = 368
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 199/423 (47%), Gaps = 65/423 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L +L+ ++ G++ PT +Q AIPSIL D+V + TG+GKT AY+LP L
Sbjct: 2 TFTQLQLHEKILQAVKACGYDKPTPIQVKAIPSILSGKDLVASAQTGTGKTAAYVLPCLQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+G + K + +I+AP+REL QI + I K G K + VGG
Sbjct: 62 LLG------------AHKSSKPRVLILAPTRELAGQITKVIAKY-GKFMKPNIASFVGGV 108
Query: 231 NRSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ + L ++P IV+ TPGR+ + +L L+LDE D +L F A+
Sbjct: 109 SYDRQLKEL--SRPIDIVIATPGRLMDHMENRRLDLSRIEMLILDEADRMLDMGFIPAIK 166
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RIV+ PKS RQT++ SAT D L+ K++
Sbjct: 167 RIVKAT----------PKS-------RQTLLFSAT------------ADDKLMSVMKDL- 196
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
L P+ + S + K Q + Y +HK L + +
Sbjct: 197 ------------LKNPVRINISQDKVDPKLIKQEI-------YMSRDSRHKNQVLAQLLD 237
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ I F R +L G A+ +HGDL + AR+ TL +F+ GEV+ LV
Sbjct: 238 QQNIFKAIIFSATKRHASKLATQLRDNGYAASPMHGDLKQNARNRTLAQFRTGEVQFLVA 297
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV++ V+N DLP Y HR GRTGR G+ G +SI E+ ++ ++
Sbjct: 298 TDVAARGIDVSDVSHVINYDLPRFHEDYVHRIGRTGRAGKTGVAISIALHSEMKQLQSIE 357
Query: 530 KQL 532
+ +
Sbjct: 358 RYI 360
>gi|384411059|ref|YP_005620424.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|335931433|gb|AEH61973.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 506
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 205/421 (48%), Gaps = 65/421 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL LL+ + G+ PT VQ+ AIPS+L D++ + TG+GKT +++LP++
Sbjct: 16 SFADLGLSKELLQAVAELGYEEPTPVQATAIPSVLMMRDLIAVAQTGTGKTASFVLPMI- 74
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D ++G + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 75 ------DILAHGRCRARMP---RSLILEPTRELAAQVAENFEKY-GKYHKLSMSLLIGGV 124
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ AL K +++ TPGR+ ++ GK+ C LV+DE D +L F +
Sbjct: 125 PMAEQQAALEKGV-DVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIET 183
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + P S RQT++ SAT+P ++ + A + +P ++
Sbjct: 184 ICTKL----------PTS-------RQTLLFSATMPPAIKKLADRFLSNPKQIEI----- 221
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S PAT +N+ + + + S P + K C D LR A
Sbjct: 222 --SRPAT-------------ANTLIDQRLIEVS-PRSKKKKLC--------DMLR----A 253
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
T I F N ++ LE +G ++HGD+ + R + L++FKNG++ VLV +
Sbjct: 254 EKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVAS 313
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKK 527
+++ARGLDV V N D+PT Y HR GRTGR G G T V+ +E + ++K
Sbjct: 314 DIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAIAAIEK 373
Query: 528 M 528
+
Sbjct: 374 L 374
>gi|451998004|gb|EMD90469.1| hypothetical protein COCHEDRAFT_1179307 [Cochliobolus heterostrophus
C5]
Length = 1062
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 226/485 (46%), Gaps = 67/485 (13%)
Query: 75 PIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAAN--SFLELGLPPLLLERLEREGFNV 132
P+++ A V V++ A S + + P + SF L + P L+ L
Sbjct: 595 PLQVAPATVSRVKARTNGAQSNSTSSQAANVPVVSQKLSFASLNVAPWLVASLASMAIKR 654
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT +Q++ IP ILK D + S TG+GKT+A+ +PIL K +D S I
Sbjct: 655 PTGIQASCIPEILKGKDCIGGSRTGTGKTIAFSVPILQKWA--EDPSG-----------I 701
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
AVI+ P+REL +QI ++K + P K + L+ G + R + ++P +V+ TPG
Sbjct: 702 FAVIITPTRELAIQIYEQVKAISAPQSMKPI--LITGGSDQRAQAIELASRPHVVIATPG 759
Query: 253 RIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
R+AE I +G+ G RF+V DE D LL+ + +M +E S
Sbjct: 760 RLAEHIRTSGEDTICGLRRVRFVVFDEADRLLAPG-KGSMLPDLETC-----------LS 807
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSG 368
L + RQT++ +ATV V+ L+ P PG L P+
Sbjct: 808 VLPPKETRQTLLFTATV-------------------TPEVLALKDQP-RAPGRL--PIFV 845
Query: 369 SSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL--DAQTVIAFMNNTRQL 426
S ++ + ++PP L+ Y T + HK L ++ ++VI F N T+
Sbjct: 846 SEVDTE------ELAIPPRLQQRYLQTPVTHKECYLYVLLNTPVNSEKSVIIFCNRTKTA 899
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
+ L + LH L + R L +F+ R+LV +++ARGLD+ E LV+
Sbjct: 900 TLLEYMLRLLDHRVTALHSGLKQSDRVNNLARFRAQAARILVATDVAARGLDIPEVALVI 959
Query: 487 NLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE----FT 542
N D+P D Y HR GRT R GR GT +++ + +V +V ++ ++ ++ E
Sbjct: 960 NFDVPRDPDDYIHRVGRTARAGRVGTAITLIGQRDVELVLAIEARVGKKMEEFEEEGVSV 1019
Query: 543 EGRLV 547
EGR+V
Sbjct: 1020 EGRVV 1024
>gi|409202975|ref|ZP_11231178.1| ATP-dependent RNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 473
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 125/425 (29%), Positives = 192/425 (45%), Gaps = 64/425 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL P + + + +G++ PT +Q AIP+IL+ DV+ + TG+GKT + LP+L
Sbjct: 2 SFSHLGLAPEINQAVVEQGYDRPTPIQEQAIPAILEGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ G + ++ A+I+ P+REL Q+ + + L + + + GG
Sbjct: 62 KLI---------AGTKPRANNVRALILTPTRELADQVWQSVA-LYSKHLPISSEVVYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LRK ++V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMMKLRKGI-DVLVATPGRLLDLYQQNAVKFDDLEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + + RQ +M SAT + A+ HDP+ +
Sbjct: 171 IIK-----------------VLPSRRQNLMFSATFSEEIRALAKGLIHDPVEI------- 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S + +N AK Q + P K + L+ V
Sbjct: 207 ------------------SVAPANSTAKSVTQWVYPVDK--------SKRTSLLKHLVQT 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V LE + AA +HG+ + AR L FKNGEVRVLV
Sbjct: 241 HDWQQVLVFTRTKHGANRLVKDLEKDKINAAAIHGNKSQSARMKALAGFKNGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE---PEVFVVKK 527
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S + ++F +++
Sbjct: 301 DIVARGLDIQELPHVVNFDLPNVYEDYVHRIGRTGRAGATGEAISFVTQETASDLFGIER 360
Query: 528 MQKQL 532
+ +QL
Sbjct: 361 LIQQL 365
>gi|355757238|gb|EHH60763.1| Putative ATP-dependent RNA helicase DDX53 [Macaca fascicularis]
Length = 596
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 197/417 (47%), Gaps = 64/417 (15%)
Query: 119 PLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG--PLK 176
P LL+ + R GF PT +QS A P IL+ D++ + TG+GKTL+YL+P V PL
Sbjct: 195 PDLLKSITRVGFVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHVDSQPLS 254
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+ NG G +++ P+REL +Q+ E K D K++ + GG NR Q
Sbjct: 255 REQRNGPG---------MLVLTPTRELALQVEAECSKY-SYKDLKSIC-ICGGRNRIGQI 303
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
E + K+ I++ TPGR+ ++ ++ +LV+DE D++L F + +I+
Sbjct: 304 EDISKD-VDIIIATPGRLNDLQMNNSVNLRSITYLVMDEADKMLDMEFEPQIMKIL---- 358
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
L + +RQT+M SAT P +V R ARS+ DP++V
Sbjct: 359 -------------LDVHPDRQTVMTSATWPDTVRRLARSYLKDPMIVYV----------- 394
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQT- 415
GNL NL A +K VT + K + + +
Sbjct: 395 ---GNL-----------NLAAVNT-------VKQNIIVTTEEEKRALTQEFIENMSPNDK 433
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
VI F++ R D +G+ LHG+ + + L+ F++G +++L+T +L AR
Sbjct: 434 VIMFVSQKRIADDLSSDFNIQGISVESLHGNSEQSDKERALEDFESGNIKILITTDLVAR 493
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
GLDV + V N D P + Y HR GR GR G+ GT V++ + + + ++ K L
Sbjct: 494 GLDVNDVTHVYNYDFPWNIEEYVHRVGRIGRAGKTGTSVTLITQRDAKIAGELIKIL 550
>gi|46125837|ref|XP_387472.1| hypothetical protein FG07296.1 [Gibberella zeae PH-1]
gi|91206552|sp|Q4I662.1|DBP8_GIBZE RecName: Full=ATP-dependent RNA helicase DBP8
Length = 547
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 203/444 (45%), Gaps = 63/444 (14%)
Query: 105 APFAANS-FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
AP N+ F L + P L++ LE PT +Q IP ILK D + S TGSGKT+A
Sbjct: 110 APTDPNTTFSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMA 169
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ +PIL K S T I AV++ P+REL +QI + K + P KA+
Sbjct: 170 FAVPILQKW-------------SEDPTAIFAVVLTPTRELALQIFEQFKAISSPQSLKAI 216
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDEL 279
LV G + R + +P +++ TPGR+A+ I +G+ G R++VLDE D L
Sbjct: 217 --LVTGGSDMRTQAIEIGKRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDEADRL 274
Query: 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
L+ +M VE E S L ERQT++ +AT+
Sbjct: 275 LNATGPGSMLPDVE-----------ECLSVLPPATERQTLLFTATI-------------- 309
Query: 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC---VTK 396
V L+ MP PG P+ ++ A +P LK Y VT
Sbjct: 310 -----TPEVRALKDMP-IKPGK--QPVFVCEVDTQTLA------IPATLKQMYIKVPVTH 355
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
+H + T +D +TVI F N T L + LH L + R L
Sbjct: 356 KEHYLHTFLLTEANVD-KTVILFCNRTSTADYLHHLLRMLEHRVTSLHSKLPQRQRIDNL 414
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+F+ R+LV +++ARGLD+ E LV+N DLP D Y HR GRT R GR+G VS
Sbjct: 415 ARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGEAVSF 474
Query: 517 CEEPEVFVVKKMQKQLAVPIQACE 540
+ +V + ++K++ ++A E
Sbjct: 475 VGQRDVELALTIEKRVGRDMEAWE 498
>gi|407792739|ref|ZP_11139775.1| ATP-dependent RNA helicase, partial [Idiomarina xiamenensis 10-D-4]
gi|407216997|gb|EKE86833.1| ATP-dependent RNA helicase, partial [Idiomarina xiamenensis 10-D-4]
Length = 393
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 201/432 (46%), Gaps = 61/432 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELGL P +L+ L R+G+ PT +Q+ AIP++L DV+ + TG+GKT + LPIL
Sbjct: 2 TFSELGLCPNILDALARQGYTEPTPIQAQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
LKD G + +I+ P+REL Q+ + G + + GG
Sbjct: 62 M---LKD------GPRAQANTARVLILTPTRELAAQVGESVATY-GANLALNYAVVFGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LRK I+V TPGR+ ++ + LVLDE D +L F + +
Sbjct: 112 KINPQMMKLRKGVD-ILVATPGRLLDLYQQNAIRFPKLEVLVLDEADRMLDMGFIHDIKK 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + +RQT+M SAT + A+ +DP +
Sbjct: 171 IIK-----------------LLPNQRQTLMFSATFSNDIRALAKGLVNDPAEI------- 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S + +N A++ +Q L Y K Q K L + +
Sbjct: 207 ------------------SVAPANSTAERIEQIL-------YAAEKSQ-KPRMLMQILRE 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
L+ VI F V +L + G AA +HG+ + AR+ L FK+G+V+VLV
Sbjct: 241 LNLPQVIVFSRTKHGANRLVKQLHSDGFLAAAIHGNKSQGARTKALADFKSGQVQVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ + V+N DLP + Y HR GRTGR G+ G +S+ + E +K ++K
Sbjct: 301 DIAARGLDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQTGHAISLVMDEEFKTLKAIEK 360
Query: 531 QLAVPIQACEFT 542
+ PI+ + T
Sbjct: 361 LIGQPIERRQLT 372
>gi|310799184|gb|EFQ34077.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 603
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 196/416 (47%), Gaps = 48/416 (11%)
Query: 106 PFAANSFLELGLPPL--LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
P A LE P L+++ + PT +QSA+ P L DV+ + TGSGKT+A
Sbjct: 176 PTALRPILEFSYLPETDLIKKKPFSAYKKPTPIQSASWPYTLSRRDVIGVAETGSGKTMA 235
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ LP++ + +K + I+AV+V+P+REL MQ +++ + K++
Sbjct: 236 FALPLVEGISKIKKRC------------IKAVVVSPTRELAMQTQEQMEHVSSLLGLKSI 283
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283
+ GGA++ Q LR+ ++V TPGR+ + G + +F VLDE D +L
Sbjct: 284 C-IYGGASKDDQRALLRRGAD-VIVATPGRLKDFMMDGTISLQDVKFAVLDEADRMLDKG 341
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
F E + I+ G P R RQT+M +AT P SV + A S+ DP+ V
Sbjct: 342 FEEDIKMIL-------GDMP--------AREARQTVMFTATWPASVRKLAESFMVDPVKV 386
Query: 344 QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT 403
+ A G L + + + +Q L LK + T Q
Sbjct: 387 ---TIGSSGKETANGAVELQANTRITQRVEVVDPRAKEQRLLQLLKQWQA-TASQKNDRI 442
Query: 404 LRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE 463
L C++ +A V AF L+ RG++ +HGDL + R+ +L+ FK G
Sbjct: 443 LVFCLYKKEATRVEAF-------------LQQRGIRVGGIHGDLRQEQRTRSLEAFKAGT 489
Query: 464 VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
VLV +++ARGLD+ E LV+N+ P Y HR GRTGR G+ G +++ E
Sbjct: 490 TPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGEAITLFTE 545
>gi|403350942|gb|EJY74950.1| RNA helicase, putative [Oxytricha trifallax]
Length = 644
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 135/470 (28%), Positives = 219/470 (46%), Gaps = 66/470 (14%)
Query: 83 VKAVRSDGIKA--AGVKKSLEIESAPFAANSFLELGLPPLLLERLER-EGFNVPTEVQSA 139
VKA D +K + +K +++ + P +F E P ++E L++ E F P+ +QS
Sbjct: 35 VKARTDDDVKKILSELKITVKGTNVPRPVVTFEEAKFPKYIMETLQQQENFVKPSAIQSQ 94
Query: 140 AIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199
P L D+V + TGSGKTL++LLP + V ++ +G+G +++AP
Sbjct: 95 GWPVALSGRDMVGIAETGSGKTLSFLLPGIVHVNA-QEMLESGDGPI-------VLVMAP 146
Query: 200 SRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA 259
+REL MQI ++ +K P K + + GG R Q++ L + I++ TPGR+ +
Sbjct: 147 TRELVMQIEQQCRKFAQPC-KISCLAIFGGVPRDGQQQKLSRG-VEILIATPGRLLDFME 204
Query: 260 AGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTI 319
+G + + +LVLDE D +L F + + +I+ +V R +RQT+
Sbjct: 205 SGVVKLNRVTYLVLDEADRMLDMGFEKHIKKILGNV-----------------RPDRQTL 247
Query: 320 MVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQ 379
M SAT P V ARS+ NV+P+ + PG +NL+ KQ
Sbjct: 248 MWSATWPKEVEELARSYC---------NVLPVH-IQIGNPG----------LTANLRIKQ 287
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
K YY K++ D VI F R + D K+ G
Sbjct: 288 VIDVCEEEDK-YYRFMNFMKKMN---------DGSKVIVFCETKRGVDDLSRKMRTDGWH 337
Query: 440 AAE-LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A + +HGD + R +T K FK+G +L+ ++++RGLDV + VVN D+P Y
Sbjct: 338 AVKGIHGDKSQAERDSTYKDFKDGTCYILIATDVASRGLDVKDIKYVVNYDMPKQCEDYV 397
Query: 499 HRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL-----AVPIQACEFTE 543
HR GRT R G G+ ++ + + + + K L +P Q ++ E
Sbjct: 398 HRIGRTARAGASGSAYALFTKNNMMIAGDLVKLLKLSGQEIPSQLYDYAE 447
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 193/409 (47%), Gaps = 53/409 (12%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +F GL +L L +G+ PT +Q+ AIP +L DV+ + TG+GKT + LP
Sbjct: 52 AEQTFESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALP 111
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
I+ ++ P+ S+ S + + A+++ P+REL Q+ + + +D ++ +
Sbjct: 112 IIQRLLPMASASA-----SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTV-VF 165
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + + Q +ALR+ I+V TPGR+ + ++ + LVLDE D +L F
Sbjct: 166 GGVDMNPQTDALRRGV-EILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPD 224
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ RI+ + A+RQT++ SAT + R A S+ P+ ++
Sbjct: 225 LQRIIN-----------------LLPAQRQTLLFSATFSPEIKRLAASYLKQPVTIEV-- 265
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
S+++N +Q + K V L+ + +
Sbjct: 266 --------------------ARSNSTNENVRQMVYQVEDGQKQAAVVHLLRQRAE----- 300
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
L Q ++ F+N+ LE G+ AA +HGD + R TL+ FKNG + L
Sbjct: 301 -QGLSKQCIV-FVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKNGTIDAL 358
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
V +++ARGLD+A+ V+N DLP + Y HR GRTGR G G +SI
Sbjct: 359 VATDVAARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSI 407
>gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|227119425|ref|YP_002821320.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|360038207|ref|YP_004939969.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|379743642|ref|YP_005334694.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|417812245|ref|ZP_12458906.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|417816459|ref|ZP_12463089.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|418330102|ref|ZP_12941135.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|418337359|ref|ZP_12946254.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|418339628|ref|ZP_12948515.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|418349026|ref|ZP_12953758.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|418353791|ref|ZP_12956516.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|419824233|ref|ZP_14347762.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|421317231|ref|ZP_15767801.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|421319698|ref|ZP_15770256.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|421323740|ref|ZP_15774267.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|421326713|ref|ZP_15777231.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|421331028|ref|ZP_15781509.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|421335430|ref|ZP_15785893.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|421340967|ref|ZP_15791397.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|421346365|ref|ZP_15796749.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|422885377|ref|ZP_16931810.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|422898086|ref|ZP_16935500.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|422904241|ref|ZP_16939190.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|422914759|ref|ZP_16949258.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|422927136|ref|ZP_16960140.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|423146476|ref|ZP_17134043.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|423147165|ref|ZP_17134639.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|423150988|ref|ZP_17138270.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|423157880|ref|ZP_17144960.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|423161452|ref|ZP_17148367.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|423162647|ref|ZP_17149508.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|423732471|ref|ZP_17705767.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|423737120|ref|ZP_17710220.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|423901328|ref|ZP_17728088.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|423912583|ref|ZP_17728805.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|424000098|ref|ZP_17743254.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|424003759|ref|ZP_17746813.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|424021889|ref|ZP_17761597.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|424028540|ref|ZP_17768136.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|424587832|ref|ZP_18027403.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|424592642|ref|ZP_18032056.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|424596501|ref|ZP_18035807.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|424603353|ref|ZP_18042486.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|424604146|ref|ZP_18043188.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|424608095|ref|ZP_18047028.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|424614737|ref|ZP_18053516.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|424618598|ref|ZP_18057256.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|424619529|ref|ZP_18058131.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|424642409|ref|ZP_18080245.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|424650247|ref|ZP_18087849.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|424654038|ref|ZP_18091411.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|440711063|ref|ZP_20891706.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 4260B]
gi|443505275|ref|ZP_21072213.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443509172|ref|ZP_21075920.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443513014|ref|ZP_21079636.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443516560|ref|ZP_21083059.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443520221|ref|ZP_21086602.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443521423|ref|ZP_21087743.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443530196|ref|ZP_21096213.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443532844|ref|ZP_21098845.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443537560|ref|ZP_21103418.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|449058163|ref|ZP_21736459.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str. Inaba
G4222]
gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|340039609|gb|EGR00582.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|340045065|gb|EGR06013.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|341629945|gb|EGS55064.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|341630724|gb|EGS55691.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|341630786|gb|EGS55745.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|341635257|gb|EGS59977.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|341644933|gb|EGS69094.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|356420825|gb|EHH74334.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|356426337|gb|EHH79649.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|356427189|gb|EHH80441.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|356430743|gb|EHH83948.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|356438239|gb|EHH91281.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|356440106|gb|EHH93065.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|356442615|gb|EHH95452.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|356442789|gb|EHH95623.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|356445888|gb|EHH98688.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|356454856|gb|EHI07503.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|356457662|gb|EHI10174.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|356649361|gb|AET29415.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796236|gb|AFC59706.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|395919689|gb|EJH30512.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|395921754|gb|EJH32573.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|395924586|gb|EJH35388.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|395933228|gb|EJH43969.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|395933638|gb|EJH44377.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|395935112|gb|EJH45847.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|395938451|gb|EJH49143.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|395947892|gb|EJH58547.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|395959847|gb|EJH70256.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|395968920|gb|EJH78832.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|395968970|gb|EJH78880.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|395971068|gb|EJH80767.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|395972411|gb|EJH82004.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|395980357|gb|EJH89615.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|408009037|gb|EKG46974.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|408015303|gb|EKG52892.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|408042567|gb|EKG78613.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|408049317|gb|EKG84544.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|408050496|gb|EKG85657.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|408060801|gb|EKG95411.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|408613896|gb|EKK87182.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|408619725|gb|EKK92739.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|408650865|gb|EKL22139.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|408652886|gb|EKL24076.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|408663825|gb|EKL34671.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|408854392|gb|EKL94149.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|408854467|gb|EKL94222.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|408877724|gb|EKM16757.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|408880066|gb|EKM18998.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|439973407|gb|ELP49638.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 4260B]
gi|443430315|gb|ELS72887.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443434156|gb|ELS80315.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443437983|gb|ELS87714.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443442093|gb|ELS95407.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443446084|gb|ELT02755.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443452521|gb|ELT12705.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443459766|gb|ELT27160.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443463936|gb|ELT34886.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443467569|gb|ELT42225.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|448263625|gb|EMB00866.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str. Inaba
G4222]
Length = 451
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 197/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F +H+I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|417112849|ref|ZP_11964769.1| ATP-independent RNA helicase DbpA [Escherichia coli 1.2741]
gi|422781785|ref|ZP_16834570.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|386142459|gb|EIG83597.1| ATP-independent RNA helicase DbpA [Escherichia coli 1.2741]
Length = 457
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L K+
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAITAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
Length = 449
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 204/430 (47%), Gaps = 67/430 (15%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
SA A +F +LGL LL+ L +G++ P+ +Q AIP++L D++ + TG+GKT
Sbjct: 9 SALTAKATFDDLGLSAPLLQALREKGYSTPSPIQEQAIPAVLSGRDLMAAAQTGTGKTAG 68
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV---REIKKLLGPSDK 220
+ LP+L L + G G+ I A+++ P+REL Q++ R+ + L +
Sbjct: 69 FTLPMLET---LSHGARPGRGQ------IRALVLTPTRELAAQVLDNARDYSRHL----R 115
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+ + GG + Q + L++ ++V TPGR+ ++ G + FLVLDE D +L
Sbjct: 116 LRSEVVFGGVKINPQIQRLQQGV-DLLVATPGRLLDLHQQGAVRFERVEFLVLDEADRML 174
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
F + R++ + R RQ ++ SAT S+ + A +DP
Sbjct: 175 DMGFIHDIRRVLSRLPER-----------------RQNLLFSATFSPSIRKLATGLLNDP 217
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
L +Q + P N A+ Q + P C ++ K
Sbjct: 218 LQIQ---ITP----------------------PNQTARTVQQVVHP------C--DMKRK 244
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
D L + + D Q V+ F KL G+ AA +HG+ + AR+ L+ FK
Sbjct: 245 PDLLSHLIRSNDWQQVLVFSRTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFK 304
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+G VRVLV +++ARG+D+ + VVNLDLP + Y HR GRTGR G G +S+
Sbjct: 305 DGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGECGHAISLVAAE 364
Query: 521 EVFVVKKMQK 530
E ++K +++
Sbjct: 365 EALLLKAIER 374
>gi|432530728|ref|ZP_19767763.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE233]
gi|431055869|gb|ELD65407.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE233]
Length = 457
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
I+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQIQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica 020-06]
gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
Length = 462
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 194/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIPS L D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++ P+REL Q+ + +VGGA+
Sbjct: 65 LTKRSEKPGKGP---------RALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGAS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P ++RQT++ SAT +V + AR DP +++ + V
Sbjct: 174 IVE-------ATP----------SDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DDQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|429462585|ref|YP_007184048.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|429338099|gb|AFZ82522.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
Length = 435
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 185/410 (45%), Gaps = 57/410 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F GL LLL + G++ PT +Q AIP IL DV+ + TG+GKT A++LPI++K
Sbjct: 14 FDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTGTGKTAAFVLPIINK 73
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P + S+ S + + +I+ P+REL Q+ + ++ ++V L GGA+
Sbjct: 74 ILPYANSST-----SPARHLLRVLILVPTRELANQVYDSVVIYSKNTNLRSV-VLFGGAD 127
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
QE L K I+V TPGR+ G LH VLDE D +L F + +I
Sbjct: 128 HYNQENNL-KLGCEILVATPGRLIAHIEQGNLHLQNIEIFVLDEADRMLDMGFMPDIDKI 186
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + PK+ RQT+ SAT + + S+ DP+
Sbjct: 187 ISKL----------PKN-------RQTLFFSATFSKFMRKIGMSYLKDPV---------- 219
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ T P +++ +Q +P K V+ L +V
Sbjct: 220 -ELDITSPNSIAD-----------NVEQLSYIVPNRFKMEAVVSILTARV---------- 257
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+T+I F N L + ++ +HGD +L R+ L+ FKNG +RVLV +
Sbjct: 258 -LETIIIFTNTKLSTIKLTSFLRSSNIQCDSIHGDKSQLERTAVLESFKNGILRVLVATD 316
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
++ARGLDV V+N D+P Y HR GRTGR G +S+ E
Sbjct: 317 VAARGLDVLGISCVINFDIPHSPEDYVHRIGRTGRANNTGVAISLISNDE 366
>gi|425288207|ref|ZP_18679089.1| ATP-independent RNA helicase dbpA [Escherichia coli 3006]
gi|408216028|gb|EKI40381.1| ATP-independent RNA helicase dbpA [Escherichia coli 3006]
Length = 457
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
I+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQIQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|398385616|ref|ZP_10543635.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397720142|gb|EJK80702.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 469
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 202/430 (46%), Gaps = 62/430 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL LL+ + G++ PT +Q+ AIP +L D++ + TG+GKT +++LP++
Sbjct: 2 TFADLGLSDELLKAVNEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI- 60
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D ++G + ++I+ P+REL Q+ +K G K ++ L+GG
Sbjct: 61 ------DILAHGRARALMP---RSLILEPTRELAAQVAENFEKY-GKYHKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL K +++ TPGR+ ++ GK+ +GC LV+DE D +L F +
Sbjct: 111 QMGDQIKALEKGVD-VLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + +RQT++ SAT+P + + A + +P ++
Sbjct: 170 ICTK-----------------LPTQRQTLLFSATMPPVIKKLADRFLDNPKSIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT N++ +H V + K + LR + A
Sbjct: 208 --ARPATASTNIT-------------------------QHLVKVDS-RKKREALRAMLAA 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + + F N +++ L+ G K+ E+HGD+ + +R L++F++G V +LV +
Sbjct: 240 EDVTSAVIFCNRKTTVRELNKSLQRYGFKSGEIHGDIDQSSRIAELERFRDGTVNILVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ V N D P Y HR GRTGR G +G + + + +QK
Sbjct: 300 DVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTSEDAEAIDNIQK 359
Query: 531 QLAVPIQACE 540
+ I +
Sbjct: 360 LIGTKINYVD 369
>gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7]
Length = 451
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 204/423 (48%), Gaps = 67/423 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N+F EL + ++ ++ GF P +Q+ +IP +L+ +DV+ Q++TG+GKT A+ +P+L
Sbjct: 2 NTFDELKINEDIMRSIKELGFTTPFPIQTQSIPELLRGNDVIGQAHTGTGKTAAFGIPML 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ +G G I+ +++AP+REL MQI EIKK +G K V + GG
Sbjct: 62 QNI-------IHGGG-------IQGLVIAPTRELAMQITEEIKK-VGKYTKIKVVTVYGG 106
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q +ALR+ KP IVV TPGR+ + G + T + +VLDE D +L F E +
Sbjct: 107 QGIGIQLDALRR-KPEIVVATPGRLIDHLDNGSIRTDNIKHVVLDEADVMLDMGFIEDIE 165
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+++ + R T + SAT+P ++R + D L AKN++
Sbjct: 166 YVLQKIP-----------------GNRITSLWSATMPPEILRLS-----DKYLNNAKNIL 203
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
++S +G G DQ+ + V K + K L ++
Sbjct: 204 -IDSDDLSGEG-------------------IDQA--------FLVIKDREKHKYLTDFIN 235
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
Q VI F + + ++ L K + GD+ + R ++ KF+ + +LV
Sbjct: 236 QNKGQ-VIVFCSTKIRTRNVARDLIKSRYKVVPIEGDMSQNKREYSMMKFRKNQADILVA 294
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+DV LVVN D+P + Y HR GRT R G +G +++ + K ++
Sbjct: 295 TDVAARGIDVPRVGLVVNYDVPNQDMVYFHRIGRTARAGAKGKAITLVSYSSIGDWKFIK 354
Query: 530 KQL 532
KQ+
Sbjct: 355 KQI 357
>gi|358386508|gb|EHK24104.1| hypothetical protein TRIVIDRAFT_89504 [Trichoderma virens Gv29-8]
Length = 477
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 187/387 (48%), Gaps = 47/387 (12%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q+A+ PS L DVV + TGSGKT+A+ LP + + + K
Sbjct: 77 YKAPTPIQAASWPSTLSGRDVVGVAETGSGKTMAFALPCVESISLINKKG---------- 126
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++AV+V+P+REL MQ ++ +L K V L GGA++ Q L+K I+V
Sbjct: 127 --VKAVVVSPTRELAMQTHEQLARLASQLRLKCV-CLYGGASKDDQRALLQKG-ADIIVA 182
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ + + + GCRF VLDE D +L F E + I+ GA P
Sbjct: 183 TPGRLKDFMSDETVDLSGCRFAVLDEADRMLDKGFEEDIKMIL-------GACPP----- 230
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGS 369
R ERQT+M +AT P SV A ++ DP+ + + G L S
Sbjct: 231 ---REERQTLMFTATWPMSVQSLASTFMVDPVKI---TIGSRGKETENGSVELQANTRIS 284
Query: 370 SSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429
+ K + L +K + + ++ L C++ +A V +F++
Sbjct: 285 QKVEVMDGKDKEFRLLQIIKQHQQGKQKDDRI--LVFCLYKKEATRVESFLSR------- 335
Query: 430 VFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLD 489
+G++ +HGDL + R+ +L+ FK G+ VLV +++ARGLD+ E LV+N+
Sbjct: 336 ------KGVRVGGIHGDLKQEQRTRSLEAFKTGKTPVLVATDVAARGLDIPEVKLVINVT 389
Query: 490 LPTDSIHYAHRAGRTGRLGRRGTVVSI 516
P Y HR GRTGR G+ G +++
Sbjct: 390 FPLTIEDYVHRIGRTGRAGKTGEAITM 416
>gi|373956888|ref|ZP_09616848.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
18603]
gi|373893488|gb|EHQ29385.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
18603]
Length = 450
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/423 (28%), Positives = 197/423 (46%), Gaps = 66/423 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + +L + G+ T VQ AIP I+ DV+ + TG+GKT AY+LPI+
Sbjct: 4 TFEDFNFNRQILNAIADAGYTEATPVQQKAIPPIMNGQDVMGIAQTGTGKTAAYMLPIIM 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ K + G +D A+++AP+REL +QI K+ +D + V L GG
Sbjct: 64 RL-----KYAQG-------SDARAIVIAPTRELALQIEENAKEFAKYTDLRIV-SLYGGL 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q+E + K I+V TPGR ++ G + T LVLDE D+++ F ++R
Sbjct: 111 GPKTQKELMDKG-VDIIVATPGRFMDVYLTGHMVTKKLEVLVLDEADKMMDMGFMPQINR 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+E V R+ RQ ++ SAT+ + + ++ P +V
Sbjct: 170 ILEVVPRK-----------------RQNLLFSATMSDKIQELSSNFLEFPTVV------- 205
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E P P A+ +Q L Y V ++ K++ L++ + A
Sbjct: 206 -EVTPQATP-----------------AQTVNQVL-------YHVPNMKTKINLLKKLLDA 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAE---LHGDLGKLARSTTLKKFKNGEVRVL 467
D + TR + V+K R E LH + G+ R + FKN EV++L
Sbjct: 241 PDDIKKLIIFCKTRVAAEDVYKFLLRKFGEKEVRVLHANKGQNTRINAINAFKNDEVKIL 300
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V ++++RG+DV++ V+N D+P Y HR GRTGR + G ++ C E + ++K
Sbjct: 301 VATDVASRGIDVSDVSHVINFDVPVVYEDYVHRIGRTGRAFQSGEAITFCNPAEEYYIRK 360
Query: 528 MQK 530
++K
Sbjct: 361 IEK 363
>gi|226289015|gb|EEH44527.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
Pb18]
Length = 546
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 211/462 (45%), Gaps = 76/462 (16%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
+AP +SF LGL P L+ L PT +Q A IP ILK D + S TGSGKT+A
Sbjct: 110 TAPSDGSSFATLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVA 169
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ PIL K S I AV++ P+REL +QI +IK + P K +
Sbjct: 170 FAAPILQKW-------------SEDPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPI 216
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDEL 279
L+ G R + +P +V+ TPGR+A+ I+++G+ G RF+VLDE D L
Sbjct: 217 --LITGGTEMRPQAIALSQRPHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRL 274
Query: 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
L + A+ SAL RQT++ +ATV
Sbjct: 275 LESGPGSML------------ADLETCLSALPPSTARQTLLFTATV-------------- 308
Query: 340 PLLVQAKNVIPLESMP--ATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKL 397
V L+SMP A+ P P+ + ++ QA ++P LK Y + L
Sbjct: 309 -----TPEVRALKSMPRPASKP-----PIFVTEISTENQA-----TIPRTLKQSYLLVPL 353
Query: 398 QHKVDTLRRCVHAL------DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
H+ L H L ++ I F N+T+ L G +A LH L +
Sbjct: 354 THREAFL----HVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSE 409
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG 511
R+ L +F+ R+LV +++ARGLD+ LV+N +P + Y HR GRT R GR G
Sbjct: 410 RTANLSRFRASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREG 469
Query: 512 TVVSICEEPEVFVVKKMQKQLAVPIQACE----FTEGRLVIG 549
V++ + +V +V ++ ++ ++ + EGR+V G
Sbjct: 470 EAVTLVGQRDVQLVLAIEDRVGRKMEEWKEEGVSIEGRIVRG 511
>gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex]
Length = 487
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 196/438 (44%), Gaps = 56/438 (12%)
Query: 79 PKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQS 138
P VK+V A ++ PF SF E P ++ + R+GF PT +Q+
Sbjct: 29 PNLTVKSVHDIEQYRASKDITIRGRDVPFPITSFDEASFPDYVMTEIRRQGFKEPTSIQA 88
Query: 139 AAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA 198
P L ++V + TGSGKTLAY LP + + + G+G A+I+A
Sbjct: 89 QGWPIALSGSNMVGIAQTGSGKTLAYTLPAIVHIN-HQPYLEPGDGPI-------ALILA 140
Query: 199 PSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEIS 258
P+REL QI K G S + + GGA + Q + + I++ TPGR+ +
Sbjct: 141 PTRELAQQISSTAKDF-GSSSRIRNTCVFGGAPKGPQLRDIERGV-EIMIATPGRLIDFL 198
Query: 259 AAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQT 318
AGK + C +LVLDE D +L F + +I+E + R +RQT
Sbjct: 199 EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----------------RPDRQT 241
Query: 319 IMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAK 378
+M SAT P V + A + D + + G ++ S++++ LQ
Sbjct: 242 LMWSATWPKEVRQLAEEFLTDYIQINV------------------GSLTLSANHNILQII 283
Query: 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM 438
Q +H + + K+ TL + + A D I F R++ + G
Sbjct: 284 DVCQ------EH-----EKETKLMTLLQEIGAEDENKTIIFAETKRKVDSITRAMRRDGW 332
Query: 439 KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498
A +HGD + R L +F++G+ +LV +++ARGLDV + V+N D P S Y
Sbjct: 333 PAMCIHGDKAQPERDWVLNEFRSGKAPILVATDVAARGLDVDDVKFVINFDYPNCSEDYV 392
Query: 499 HRAGRTGRLGRRGTVVSI 516
HR GRTGR R GT +
Sbjct: 393 HRIGRTGRSQRTGTAYTF 410
>gi|126663594|ref|ZP_01734591.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
BAL38]
gi|126624542|gb|EAZ95233.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
BAL38]
Length = 642
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 206/444 (46%), Gaps = 78/444 (17%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPI 168
N F +LGL LL ++ GF P+EVQ AIP +L +N D+V + TG+GKT A+ P+
Sbjct: 2 NKFEQLGLNESLLLAIKDLGFENPSEVQEKAIPVLLEQNTDLVALAQTGTGKTAAFGFPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ K+ + + +A+I++P+REL +QI EIK + G
Sbjct: 62 IQKI-------------DAENRNTQALILSPTRELCLQITNEIKLYSKYIKGLHTVAVYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ + Q +++ I+V TPGR+ ++ G ++ F +LDE DE+L+ F E +
Sbjct: 109 GASITEQAREVKRG-AQIIVATPGRMQDMINRGLVNIKNIDFCILDEADEMLNMGFYEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAK 346
I+ P E+ T + SAT+P V R A+ + P + V +K
Sbjct: 168 CSILSDT----------PD-------EKNTWLFSATMPAEVARIAKQFMSSPVEITVGSK 210
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N SGS++ S+ YYCV + + + L+R
Sbjct: 211 N-------------------SGSATVSH---------------EYYCVNA-RDRYEALKR 235
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
A + F R + KL G AA LHGDL + R +K F+ ++++
Sbjct: 236 LADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQM 295
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV---- 522
LV +++ARG+DV VVN LP + Y HR+GRTGR G+ GT + I + E+
Sbjct: 296 LVATDVAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIITKSELRKIS 355
Query: 523 ----FVVKKMQ-KQLAVPIQACEF 541
+ +K Q K + I+ CE
Sbjct: 356 SIERIIQQKFQEKTIPSGIEICEI 379
>gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group]
Length = 1382
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 189/421 (44%), Gaps = 67/421 (15%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E+ P +F G PP +L+ + GF PT +Q+ P L+N D+V + TGSGKTL
Sbjct: 596 ENVPPPFMTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL 655
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
YL+P + ++ G +++AP+REL QI E K G S + +
Sbjct: 656 GYLIPAFIHLRRYQNNPMLG---------PTVLVLAPTRELASQIQDEAVKF-GRSSRVS 705
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GG ++ Q L + IVV TPGR+ +I K+ H FLVLDE D +L
Sbjct: 706 CTCLYGGTSKGLQLRELERGA-DIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDM 764
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +IV+ + R RQT+M +AT P V + A DP+
Sbjct: 765 GFEPQIRKIVDEIPR-----------------NRQTLMYTATWPKEVTKIAGDLLKDPVQ 807
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V N+ ++ + A N Q + +PP +D
Sbjct: 808 V---NIGSIDELVA-----------------NKSITQYVEVVPP--------------LD 833
Query: 403 TLRRCVHALDAQT----VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
RR L AQ VI F + T+++ D + + R AA +HGD + R L +
Sbjct: 834 KQRRLEQILRAQERGSKVIIFCS-TKKMCDQLARDIGRSFGAASIHGDKSQAERDNVLNQ 892
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
F+ G +LV +++ARGLD+ + +V+N D PT Y HR GRTGR G G +
Sbjct: 893 FRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFS 952
Query: 519 E 519
E
Sbjct: 953 E 953
>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 197/436 (45%), Gaps = 65/436 (14%)
Query: 92 KAAGVKKSLEIE----SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN 147
+ A KSL I P +F + G P L+ + ++G+ PT +Q A+P +L
Sbjct: 192 EVADYMKSLAIRVSGFDVPRPVKNFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSG 251
Query: 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207
D++ + TGSGKT A++LP++ + E K+ VI AP+REL QI
Sbjct: 252 RDIIGIAKTGSGKTAAFVLPMIVHI--------MDQPELQKEEGPIGVICAPTRELAHQI 303
Query: 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267
E KK P + + V + GG ++ Q + L K+ IVV TPGR+ ++ L
Sbjct: 304 YLEAKKFAKPYNLQ-VAAVYGGVSKFEQFKEL-KSGCEIVVATPGRLIDLLKMKALRMFR 361
Query: 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF 327
+LVLDE D + F + IV + R +RQT++ SAT+P+
Sbjct: 362 ATYLVLDEADRMFDLGFEPQIRSIVGQI-----------------RPDRQTLLFSATMPY 404
Query: 328 SVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLP-P 386
V R AR DP+ V G ++N KQ LP
Sbjct: 405 KVERLAREILTDPIRVTV----------------------GQVGSANEDIKQVVNVLPSD 442
Query: 387 ALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
A K + + K+ +D V+ F ++ + +L G K A LHGD
Sbjct: 443 AEKMPWLLEKMPGMIDD----------GDVLVFATKKARVDEVENQLNQHGFKVAALHGD 492
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGR 506
+ +R TL+KFK+G VLV +++ARGLD+ VVN D+ + + HR GRTGR
Sbjct: 493 KDQASRMETLQKFKSGIYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGR 552
Query: 507 LG-RRGTVVSICEEPE 521
G + GT ++ + E
Sbjct: 553 AGDKDGTAYTLITQKE 568
>gi|357607424|gb|EHJ65488.1| vasa-like protein [Danaus plexippus]
Length = 606
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 193/416 (46%), Gaps = 51/416 (12%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E+ P A SF L +L + + G+ PT +Q AIP I+ D++ + TGSGKT
Sbjct: 183 ENPPRAIESFETANLRNYVLNNILKSGYKKPTPIQKHAIPIIMNGRDLMGCAQTGSGKTA 242
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
A+LLPI++ + L+D G +G + VIVAP+REL +QI E +K S K
Sbjct: 243 AFLLPIINTL--LQDLRELVVGPNGCAQP-QVVIVAPTRELTIQIFNEARKFSYGSILKI 299
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
G A R + + R I+V TPGR+ + ++ RF+VLDE D +L
Sbjct: 300 AVAYGGTAVRHQGDNISRGCH--ILVATPGRLHDFVDRNRVSFDSVRFVVLDEADRMLDM 357
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F ++ ++++H + ERQT+M SAT P + A + ++ L
Sbjct: 358 GFMPSVEKMMDH-------------PTMVNITERQTLMFSATFPEDIQHLAGRFLNNYLF 404
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V G + G+S++ +Q +K+ K +
Sbjct: 405 VAV------------------GVVGGASTD-------VEQIFHQVIKY--------EKQN 431
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
TL++ + D + ++ F+ R L + M + +HGD + R L FK+G
Sbjct: 432 TLKKLIEENDGKRILVFVETKRNADFIAAMLSEQQMLTSSIHGDRMQREREEALHNFKSG 491
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
+LV ++ARGLD+ D+VVN DLP Y HR GRTGR+G RG VS +
Sbjct: 492 RHFILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFFD 547
>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
mellifera]
Length = 588
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 194/418 (46%), Gaps = 56/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
+++ ++ P F E PP +LE + ++G++ PT +Q+ P L D+V + TGS
Sbjct: 102 TIKGDNIPNPIQYFEEGNFPPYVLEEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGS 161
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL Y+LP + + + + SNG+G A+I+AP+REL QI +E+ G +
Sbjct: 162 GKTLGYVLPAIVHI-IHQPRLSNGDGPI-------ALILAPTRELAQQI-QEVANCFGEA 212
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ GGA + Q L + I + TPGR+ + G + C +LVLDE D
Sbjct: 213 AGVRNTCIFGGAPKGPQAHDLERG-VEICIATPGRLIDFLERGTTNLRRCTYLVLDEADR 271
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +I+E + R +RQ +M SAT P V A +
Sbjct: 272 MLDMGFEPQIRKIIEQI-----------------RPDRQVLMWSATWPKEVRALAEDFLS 314
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
D + + G ++ S++++ +Q Q LK Y + ++
Sbjct: 315 DYMHLNI------------------GSLTLSANHNIIQIVDVCQEFEKDLKLYRLLQEIG 356
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
++ + I F+ R++ D + G +A +HGD + R L++
Sbjct: 357 NEKEN-----------KTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQE 405
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK+G +LV +++ARGLDV + V+N D P+ S Y HR GRTGR + GT +
Sbjct: 406 FKSGRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAF 463
>gi|317153822|ref|YP_004121870.1| DEAD/DEAH box helicase [Desulfovibrio aespoeensis Aspo-2]
gi|316944073|gb|ADU63124.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 421
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 186/404 (46%), Gaps = 63/404 (15%)
Query: 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188
GF VPT +Q+ AIP +LK DV+ + TG+GKT A+ LPIL + L D + G G
Sbjct: 20 GFTVPTPIQTLAIPEVLKGRDVMGLAQTGTGKTAAFALPILQR---LLDSRATGQGP--- 73
Query: 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
I +++AP+REL +QI +E + G + GG + Q A RK +VV
Sbjct: 74 ---IRCLVLAPTRELALQI-QETFDVFGRQAGIRSSCVFGGVGFNPQINAARK--ATVVV 127
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
PGR+ + G + LVLDE D +L F + RI+ R P
Sbjct: 128 ACPGRLVALLQQGDIRLDHVDTLVLDEADRMLDMGFMPDLKRILS----------RLP-- 175
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSG 368
A+RQ ++ SAT+P + + A + DP VQ N +P+ES+
Sbjct: 176 -----AKRQNLLFSATMPADIRKLADTILVDPARVQVSNTVPVESVT------------- 217
Query: 369 SSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428
Q+ P H K L + +++ ++V+ F + K+
Sbjct: 218 -------------QTFYPVADHL--------KGGLLEALLGSMERESVLVFTRTKHRAKN 256
Query: 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488
+L RGM A L G++ + R L F+ G+ ++V +++ARG+D V+N
Sbjct: 257 LAKRLGLRGMSATFLQGNMSQNQRQRALDGFRCGDFEIMVATDIAARGIDCDRISHVINF 316
Query: 489 DLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
D P + Y HR GRTGR GR G +S+ + VV+ +++ L
Sbjct: 317 DAPDTAEAYTHRIGRTGRAGRTGEALSLITREDHLVVRDIERVL 360
>gi|225681783|gb|EEH20067.1| ATP-dependent RNA helicase dbp8 [Paracoccidioides brasiliensis
Pb03]
Length = 546
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 140/460 (30%), Positives = 211/460 (45%), Gaps = 72/460 (15%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
+AP +SF LGL P L+ L PT +Q A IP ILK D + S TGSGKT+A
Sbjct: 110 TAPSDGSSFATLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVA 169
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ PIL K S I AV++ P+REL +QI +IK + P K +
Sbjct: 170 FAAPILQKW-------------SEDPFGIFAVVLTPTRELALQIFEQIKAISAPQSLKPI 216
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDEL 279
L+ G R + +P +V+ TPGR+A+ I+++G+ G RF+VLDE D L
Sbjct: 217 --LITGGTEMRPQAIALSQRPHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRL 274
Query: 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
L + A+ SAL RQT++ +ATV V RA +S
Sbjct: 275 LESGPGSML------------ADLETCLSALPPSTARQTLLFTATVTPEV-RALKSMPR- 320
Query: 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH 399
PA+ P P+ + ++ QA ++P LK Y + L H
Sbjct: 321 ---------------PASKP-----PIFVTEISTENQA-----TIPRTLKQSYLLVPLTH 355
Query: 400 KVDTLRRCVHAL------DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARS 453
+ L H L ++ I F N+T+ L G +A LH L + R+
Sbjct: 356 REAFL----HVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSERT 411
Query: 454 TTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTV 513
L +F+ R+LV +++ARGLD+ LV+N +P + Y HR GRT R GR G
Sbjct: 412 ANLSRFRASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREGEA 471
Query: 514 VSICEEPEVFVVKKMQKQLAVPIQACE----FTEGRLVIG 549
V++ + +V +V ++ ++ ++ + EGR+V G
Sbjct: 472 VTLVGQRDVQLVLAIEDRVGRKMEEWKEEGVSIEGRIVRG 511
>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium sp. SKA34]
Length = 427
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 206/440 (46%), Gaps = 60/440 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF L L P LL+ L G++ PT+VQ AIP LK DV+ + TG+GKT A+ LP+L
Sbjct: 2 SFQSLNLHPNLLKALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLLQ 61
Query: 171 KVGPLKDK----SSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
++ L + S+ + I A+I+ P+REL Q+ I ++ K V
Sbjct: 62 RLMTLPSQAEQVSTAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIK-VAVA 120
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + + Q +AL I+V TPGR+ + G + VLDE D +L F
Sbjct: 121 YGGTSMNVQVKALNAG-AEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIV 179
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI++ M AERQT+ SAT V + A +P +V
Sbjct: 180 DIQRIMKR-----------------MPAERQTLFFSATFSKQVKKLAFDILTNPKMV--- 219
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
E PA N A+ +Q + P KH K + L
Sbjct: 220 -----EVTPA-----------------NTAAETVEQIVYPVDKH--------RKAELLAY 249
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ + + + V+ F T+Q D + K L G+KA+ ++GD + AR L FK+G+ R
Sbjct: 250 LIGSRNWRQVLVF-TKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGKTR 308
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ARGLD+ + + VVN D+P + Y HR GRTGR G G +++ E + +
Sbjct: 309 VLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLMSLDEEWAL 368
Query: 526 KKMQKQLA--VPIQACEFTE 543
K +++ L +P Q E E
Sbjct: 369 KAIEELLDSRLPQQWLEGYE 388
>gi|451811659|ref|YP_007448114.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776817|gb|AGF47816.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 456
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 185/410 (45%), Gaps = 57/410 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F GL LLL + G++ PT +Q AIP IL DV+ + TG+GKT A++LPI++K
Sbjct: 14 FDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTGTGKTAAFVLPIINK 73
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P + S+ S + + +I+ P+REL Q+ + ++ ++V L GGA+
Sbjct: 74 ILPYANSST-----SPARHLLRVLILVPTRELANQVYDSVVIYSKNTNLRSV-VLFGGAD 127
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
QE L K I+V TPGR+ G LH VLDE D +L F + +I
Sbjct: 128 HYNQENNL-KLGCEILVATPGRLIAHIEQGNLHLQNIEIFVLDEADRMLDMGFMPDIDKI 186
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + PK+ RQT+ SAT + + S+ DP+
Sbjct: 187 ISKL----------PKN-------RQTLFFSATFSKFMRKIGMSYLKDPV---------- 219
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ T P +++ +Q +P K V+ L +V
Sbjct: 220 -ELDITSPNSIAD-----------NVEQLSYIVPNRFKMEAVVSILTARV---------- 257
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+T+I F N L + ++ +HGD +L R+ L+ FKNG +RVLV +
Sbjct: 258 -LETIIIFTNTKLSTIKLTSFLRSSNIQCDSIHGDKSQLERTAVLESFKNGILRVLVATD 316
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
++ARGLDV V+N D+P Y HR GRTGR G +S+ E
Sbjct: 317 VAARGLDVLGISCVINFDIPHSPEDYVHRIGRTGRANNTGVAISLISNDE 366
>gi|261187455|ref|XP_002620151.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081]
gi|239594201|gb|EEQ76782.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081]
gi|239609244|gb|EEQ86231.1| ATP-dependent RNA helicase [Ajellomyces dermatitidis ER-3]
gi|327356484|gb|EGE85341.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis ATCC
18188]
Length = 489
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/392 (32%), Positives = 192/392 (48%), Gaps = 51/392 (13%)
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
E F+ PT +QS P + DV+ + TGSGKTLA+ +P + KV + S
Sbjct: 90 ENFSKPTPIQSVTWPFLFAGRDVIGVAETGSGKTLAFGVPCIRKVLAI--------NASR 141
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ I AVI+ P+REL MQI ++ K A + GGA++ Q AL+K ++V
Sbjct: 142 SSSRISAVIITPTRELAMQIYDQLVKFTPKGVGLAC--IYGGASKDDQRRALKK--ASVV 197
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V TPGR+ ++ + L ++LVLDE D +L F + + IV GA P K
Sbjct: 198 VATPGRLKDLHSDQSLDLQKVKYLVLDEADRMLDKGFEQDIKDIV-------GAMPSSRK 250
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
RQT+M +AT P SV + A ++ DP+ V T G+LS
Sbjct: 251 --------RQTVMFTATWPMSVRKLAATFMKDPVTV-------------TIGGDLS---- 285
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
S +N + KQ + + P K Y ++ L +R +A+D V+ F ++
Sbjct: 286 -SDIRANTRIKQIVEVVKPEDKEYRLLSLLNQ----YQRGKNAMDK--VLVFCLYKKEAT 338
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
+ ++G K A +HGD+ + R +L FK+G V +LV +++ARGLD+ LV+N
Sbjct: 339 RIERFIRSKGFKVAGIHGDMNQTERFKSLDAFKSGSVPLLVATDVAARGLDIPAVKLVLN 398
Query: 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ P Y HR GRTGR G G +++ E
Sbjct: 399 VTFPLTVEDYVHRIGRTGRAGSDGLAITMFTE 430
>gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
Length = 525
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 194/408 (47%), Gaps = 52/408 (12%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + + P ++ L +G P +Q+ +P L D++ Q+ TG+GKTL + +PIL
Sbjct: 27 TFADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILH 86
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ D+ + +SG +A+++ P+REL Q+ EI+ + ++ + GG
Sbjct: 87 DIIGPGDEGWDEIPDSGFP---QALVILPTRELAKQVAAEIRAAATHRVARIIE-IYGGV 142
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q EALRK +VVGTPGR+ ++ G L R LV+DE DE+L F + +
Sbjct: 143 GFDSQIEALRKG-VEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEK 201
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ + R T++ SAT+P V+ AR + + P ++A
Sbjct: 202 LISQIP-----------------PHRHTMLFSATMPGPVVALARRYMYQPTHIRA----- 239
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
T P + SS + Q KQ Y V L +K + + R + A
Sbjct: 240 ------TDPTD--------SSQTVRQVKQV----------VYRVHSL-NKTEVIARILQA 274
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ I F R + +L RG +HGDLG+ AR L+ F++G+V VLV
Sbjct: 275 RNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHGKVDVLVAT 334
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
+++ARG+DV + V+N + P D Y HR GRT R G +G+ ++ +
Sbjct: 335 DVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFID 382
>gi|367477654|ref|ZP_09477001.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 285]
gi|365270104|emb|CCD89469.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 285]
Length = 485
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 198/431 (45%), Gaps = 61/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLSRRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G + +I+ P+REL Q V+E G K V L+GG
Sbjct: 62 IL-------EKGRARARMP---RTLILEPTRELAAQ-VKENFDRYGVGQKLNVALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ L + +++ TPGR+ + + G L G LV+DE D +L F + R
Sbjct: 111 SFGDQDAKLTRGV-DVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIER 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V P + RQT+ +AT+P + R ++ H+P V+
Sbjct: 170 ICKLV----------PFT-------RQTLFFTATMPPEIRRITDAFLHNPQKVE------ 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV-H 409
+S P + + + + LQ ++ K D LRR +
Sbjct: 207 -----------VSKPATTAITVTQLQVPSGREA--------------HQKRDVLRRLLRE 241
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A D + I F N R + L+ G LHGD+ + AR+ L +F+ GE+ +LV
Sbjct: 242 AKDLKNAIIFCNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPLLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++ARGLD+ E V N D+P S Y HR GRTGR GR GT +SI + V ++
Sbjct: 302 SDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVAPADQKSVTAIE 361
Query: 530 KQLAVPIQACE 540
K + I E
Sbjct: 362 KLIGQSIPTIE 372
>gi|161870287|ref|YP_001599457.1| ATP-dependent RNA helicase [Neisseria meningitidis 053442]
gi|161595840|gb|ABX73500.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
053442]
Length = 457
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 195/413 (47%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|451847073|gb|EMD60381.1| hypothetical protein COCSADRAFT_174666 [Cochliobolus sativus ND90Pr]
Length = 1123
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 148/500 (29%), Positives = 231/500 (46%), Gaps = 76/500 (15%)
Query: 62 TNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLL 121
T + KP + +P I ++VKA R++G ++ A SF L + P L
Sbjct: 648 TKAQPAPKPLQVAPTTI--SRVKA-RANGAQSNKTPSQAADVPAVNQKLSFASLNVAPWL 704
Query: 122 LERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN 181
+ L PT +Q++ IP ILK D + S TG+GKT+A+ +PIL K +D S
Sbjct: 705 VASLASMAIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTIAFSVPILQKWA--EDPSG- 761
Query: 182 GNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRK 241
I AVI+ P+REL +QI ++K + P K + L+ G + R +
Sbjct: 762 ----------IFAVIITPTRELAIQIYEQVKAISAPQSMKPI--LITGGSDQRAQAIELA 809
Query: 242 NKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFNFREAMHRIVEHVGR 297
++P +V+ TPGR+AE I +G+ G RF+V DE D LL+ + +M +E
Sbjct: 810 SRPHVVIATPGRLAEHIRTSGEDTICGLRRVRFVVFDEADRLLAPG-KGSMLPDLETC-- 866
Query: 298 RSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPAT 357
S L + RQT++ +ATV V+ L+ P
Sbjct: 867 ---------LSVLPPKETRQTLLFTATV-------------------TPEVLALKDQP-R 897
Query: 358 GPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL------ 411
PG L P+ S ++ D ++PP L+ Y T + HK L H L
Sbjct: 898 APGRL--PIFVSEVDTE------DLAIPPRLQQRYLQTPVTHKECYL----HVLLNTPVN 945
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
++VI F N T+ + L + LH L + R L +F+ R+LV +
Sbjct: 946 SEKSVIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQSDRVNNLARFRAQAARILVATD 1005
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ E LV+N D+P D Y HR GRT R GR GT +++ + +V +V ++ +
Sbjct: 1006 VAARGLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTAITLIGQRDVELVFAIEAR 1065
Query: 532 LAVPIQACE----FTEGRLV 547
+ ++ E EGR+V
Sbjct: 1066 VGKKMEEFEEEGVSIEGRVV 1085
>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
Length = 472
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 206/450 (45%), Gaps = 66/450 (14%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
ES P A SF +LG+ L E E G+ PT +Q+ +IP L+ D++ + TGSGKT
Sbjct: 46 ESRP-APKSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTA 104
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
A+ LPIL L +K + G +I+AP+REL QI + + L G +
Sbjct: 105 AFALPILQ---ALMEKPQSFFG----------LILAPTRELAFQISKSFESL-GSTINVR 150
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLS 281
+VGG + Q AL K KP I+V TPGR+ + + ++LV+DE D LL
Sbjct: 151 CAVIVGGMDMVSQSIALGK-KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLD 209
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
+F + +I++ + R ER+T + SAT+ V R+
Sbjct: 210 MDFGPLLDKILKVLPR-----------------ERRTFLFSATMSSKVESLQRA------ 246
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
+LS P+ S S++ Q L Y +HK
Sbjct: 247 -------------------SLSNPLRVSVSSNKYQT-------VSTLLQSYLFLPHKHKD 280
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
L ++ Q+ I F + + F L + G A LHG L + AR L KF++
Sbjct: 281 IYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRS 340
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+LV +++ARGLD+ D+V+N DLPTDS Y HR GRT R G+ G +S + +
Sbjct: 341 RSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYD 400
Query: 522 VFVVKKMQKQLAVPIQACEFTEGRLVIGKE 551
V + +++ L ++ E + +++ E
Sbjct: 401 VEIWLRIEGALGKKLKEYELEKDEVMVLAE 430
>gi|110638956|ref|YP_679165.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
gi|110281637|gb|ABG59823.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
33406]
Length = 446
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 199/423 (47%), Gaps = 62/423 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L+ L EG+ PT +QS AIP +L+ D++ + TG+GKT A+ +PIL
Sbjct: 3 FQDLKLIDPILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPILQL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ K + +K I ++IV P+REL +QI ++ G + GG N
Sbjct: 63 LSVKK--------STDRKRPIRSLIVTPTRELAIQIGESLQA-YGKYTGLTSTVIFGGVN 113
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+SRQ AL +N ++V TPGR+ ++ G + VLDE D +L F + R+
Sbjct: 114 QSRQVTAL-QNGIDVLVATPGRLLDLMNQGFISLRHIEIFVLDEADRMLDMGFVHDVRRL 172
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ LA+ A+RQ++ SAT+P +++ A + +P V+ V P+
Sbjct: 173 L-----------------LALPAKRQSLFFSATMPPEIVKLADNILVNPSKVE---VTPV 212
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S T +K + +K + L +
Sbjct: 213 SSTADT------------------------------IKQFMYFVDRGNKNNLLVEVLQDP 242
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+T + F T+ + D V K+ A +KA +HG+ + AR L FK R+LV
Sbjct: 243 KIKTCLVF-TRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRILVAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV + V+N ++P Y HR GRTGR G +GT S C+ E +K ++K
Sbjct: 302 DIAARGIDVDNLEFVINYEIPNIPETYVHRIGRTGRAGAKGTAFSFCDAEEKAYLKDIEK 361
Query: 531 QLA 533
++
Sbjct: 362 LIS 364
>gi|432861152|ref|ZP_20086236.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE146]
gi|431407161|gb|ELG90380.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE146]
Length = 457
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 185/420 (44%), Gaps = 65/420 (15%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG S Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFSMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPI 536
LD+ +LVVN +L D + HR GRT R G G +S C E V + L + +
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRVNIISDMLQIKL 364
>gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
Length = 516
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 188/410 (45%), Gaps = 65/410 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFNNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q+ + K G K V L+G
Sbjct: 62 ML------------EKGRARARMPRTLILEPTRELAAQVKEQFDK-YGAGQKLNVALLIG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q+ L + +++ TPGR+ + + G L G L++DE D +L F +
Sbjct: 109 GVSFGDQDLKLTRGV-DVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
R+ + V P + RQT+ +AT+P + R ++ H+P ++
Sbjct: 168 ERVCKLV----------PFT-------RQTLFFTATMPPEIRRVTETFLHNPEKIEV--- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+K A ++ A C + K +TLR +
Sbjct: 208 ----------------------------SKPASTAVTVAQSQVACGREPHEKRETLRSLI 239
Query: 409 H-ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
A D Q I F N R++ L+ G LHGD+ + AR+ L +F+ GE+ +L
Sbjct: 240 RAATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPIL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
V ++++ARGLD+ E V N D+P Y HR GRTGR GR GT +SI
Sbjct: 300 VASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIV 349
>gi|390953372|ref|YP_006417130.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390419358|gb|AFL80115.1| DNA/RNA helicase, superfamily II [Aequorivita sublithincola DSM
14238]
Length = 423
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 199/421 (47%), Gaps = 63/421 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL LL+ + ++G+ P+ +Q AIP IL+ DV+ + TGSGKT + LP+L
Sbjct: 2 SFKSLGLSDALLQAISKKGYETPSAIQKKAIPLILERKDVLASAQTGSGKTAGFALPMLQ 61
Query: 171 KVGPLKDKSSNGNGE-SGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ N E + +K + A+I+ P+REL Q+ E ++ +D ++ + GG
Sbjct: 62 IL----------NSEPAFRKRPVRALILTPTRELAAQVEDEFREYSEFTDLRSTV-IFGG 110
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ Q +ALR N I+V TPGR+ ++ L LVLDE D +L F +
Sbjct: 111 VGANPQIKALR-NGVDILVATPGRLLDLENQNALSLSKVEILVLDEADRMLDMGFLRDIK 169
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I+ + + RQ ++ SAT + + A + H P+LV+A
Sbjct: 170 KILALLPNK-----------------RQNLLFSATFSKEIKKLANEFLHHPVLVEA---- 208
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ N ++ DQ++ Y V K Q K D + + +
Sbjct: 209 ---------------------TPENTTVEKIDQTV-------YRVDKAQ-KTDLIIKLIS 239
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ Q V+ F KLE + +A +HG+ + AR+ L FK G+VRVLV
Sbjct: 240 EGNWQQVLVFTRTKHGANRLSEKLEKAKITSAAIHGNKSQGARTRALSGFKEGKVRVLVA 299
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ V+N +LP S Y HR GRTGR G G +S+ EV +K ++
Sbjct: 300 TDIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEALSLVSLDEVGYLKDIE 359
Query: 530 K 530
K
Sbjct: 360 K 360
>gi|336171342|ref|YP_004578480.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725914|gb|AEH00052.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 411
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 203/434 (46%), Gaps = 67/434 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +L L LL + +G++ PT +Q IP +L DV+ + TG+GKT A+ LPIL
Sbjct: 2 SFKDLKLNRPLLRAIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPILQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ +D + N + + A+I++P+REL +QI + L ++ ++ + GGA
Sbjct: 62 LLYDKQDAAKN-------QKKVRALIISPTRELAIQIQENFQDYLIYTNLRSTV-IFGGA 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q++ LRK I++ TPGR+ ++ +++ LVLDE D +L F
Sbjct: 114 SIEPQKDVLRKG-VDILIATPGRLLDLHKQDEVNLDYVETLVLDEADLMLDMGF------ 166
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ V + P AE+Q ++ SAT+P+ V + A++ ++P V+
Sbjct: 167 -IDDVKKIERLCP----------AEKQILLFSATMPYKVEQLAKTILNNPKRVEVS---- 211
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH----KVDTLRR 406
SS+++N+ QA +P K C+ L++ K+ RR
Sbjct: 212 ----------------QNSSTSTNIN--QALYYVPKPKKIELCLHLLRNTVKGKIIIFRR 253
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ +D NN KA +HGD + R L +FK EV +
Sbjct: 254 TKYGVDKLEKTLLRNN---------------YKADSIHGDKSQTLRQEALNRFKKNEVNI 298
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
L+ +++ARG+D+ D V+N D+P Y HR GRTGR G G S C E +K
Sbjct: 299 LIATDVAARGIDIENVDAVINFDMPNVPETYVHRIGRTGRAGNTGMAYSFCSADEKEYIK 358
Query: 527 KMQKQLAVPIQACE 540
+Q+ + + + E
Sbjct: 359 TIQQLINLQLDIVE 372
>gi|429744643|ref|ZP_19278116.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
gi|429162329|gb|EKY04658.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
Length = 484
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 57/414 (13%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A N F LGL ++ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 29 AMNPFSSLGLGQEIVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLP 88
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
L ++ S+ S + +++ P+REL QI + ++ + + L
Sbjct: 89 SLERLKRYATPST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LF 142
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG N +Q LR IVV T GR+ + +H + +VLDE D +L F +
Sbjct: 143 GGVNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHFNKVEIVVLDEADRMLDMGFIDD 201
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ I++ + R ERQT++ SAT + + A+ + + P LV+
Sbjct: 202 IRAIMQMLPR-----------------ERQTLLFSATFSDPIRKLAQDFMNAPELVEVA- 243
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ +++N+N++ +H V + K L R
Sbjct: 244 -------------------AQNTANANVE------------QHIIAVDTFK-KRHLLERL 271
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ LD + VI F + + L+ R + A +HGD + +R TL FK G +RVL
Sbjct: 272 IVDLDIKQVIVFCKTKQSVDQVTRDLQRREIAAQAIHGDKSQQSRLETLAAFKEGSLRVL 331
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
V +++ARGLD+AE V+N +LP Y HR GRTGR G G +S+ +E E
Sbjct: 332 VATDVAARGLDIAELPFVINYELPAQPEDYVHRIGRTGRAGADGVAISLMDENE 385
>gi|261401858|ref|ZP_05987983.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
lactamica ATCC 23970]
gi|269207983|gb|EEZ74438.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
lactamica ATCC 23970]
Length = 457
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|380488521|emb|CCF37316.1| ATP-dependent RNA helicase DBP3, partial [Colletotrichum
higginsianum]
Length = 521
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 197/416 (47%), Gaps = 49/416 (11%)
Query: 106 PFAANSFLELGLPPL--LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
P A LE P L+++ + PT +QS++ P L DV+ + TGSGKT+A
Sbjct: 95 PTALRPILEFSYLPKTDLIKKNPFSAYKKPTPIQSSSWPYTLSRRDVIGVAETGSGKTMA 154
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
+ LP++ + +K + I+AV+V+P+REL MQ +++ + K++
Sbjct: 155 FALPLVEGISKIKKRC------------IKAVVVSPTRELAMQTQEQMEHVSSLLGLKSI 202
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283
+ GGA++ Q LR+ ++V TPGR+ + G + RF VLDE D +L
Sbjct: 203 C-IYGGASKDEQRGLLRRGAD-VIVATPGRLKDFMMDGTISLGDVRFAVLDEADRMLDKG 260
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
F E + I+ + PRE ERQT+M +AT P SV + A S+ DP+ +
Sbjct: 261 FEEDIKMILGDM------PPRE---------ERQTVMFTATWPASVRKLAESFMVDPIKI 305
Query: 344 QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT 403
+ A G L + + + +Q L LK + T Q
Sbjct: 306 ---TIGSSGKETANGAVELQANTRITQRVEVVDPRAKEQRLLQLLKQWQ--TGAQKDDRI 360
Query: 404 LRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE 463
L C++ +A V F L+ RG++ +HGDL + R+ +L+ FK G
Sbjct: 361 LVFCLYKKEATRVETF-------------LQQRGIRVGGIHGDLRQEQRTRSLEAFKAGT 407
Query: 464 VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
VLV +++ARGLD+ E LV+N+ P Y HR GRTGR G+ G +++ E
Sbjct: 408 TPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGEAITLFTE 463
>gi|154288372|ref|XP_001544981.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
gi|160380612|sp|A6QXC1.1|DBP3_AJECN RecName: Full=ATP-dependent RNA helicase DBP3
gi|150408622|gb|EDN04163.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
Length = 487
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 196/392 (50%), Gaps = 51/392 (13%)
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
E F+ PT +QS P + DV+ + TGSGKTLA+ +P + KV + N + S
Sbjct: 88 EHFSKPTPIQSVTWPYLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEI-----NASHSSF 142
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ I AVI+ P+REL MQI ++ K + + + GGA++ Q AL+K +++
Sbjct: 143 R---ISAVIITPTRELAMQIHDQLVKFT--PNGVGLACIYGGASKDDQRRALKK--ASVI 195
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V TPGR+ + + L+ ++LVLDE D +L F + + IV
Sbjct: 196 VATPGRLKDFHSDESLNLKKVKYLVLDEADRMLDKGFEQDIKDIV--------------- 240
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
SA+ +RQT+M +AT P SV + A ++ +P+ V T G+LS
Sbjct: 241 SAMPSSRKRQTVMFTATWPISVRKLATTFMKEPVTV-------------TIGGDLS---- 283
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
S +N + KQ + + P K ++L ++ +R +A+D V+ F ++
Sbjct: 284 -SDIRANTRIKQIVEVVKPENKE----SRLLSLLNQYQRGRNAMDK--VLVFCLYKKEAT 336
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
+ ++G K A +HGD+ + R +L FK+G V VLV +++ARGLD+ LV+N
Sbjct: 337 RIERFIRSKGFKVAGIHGDMNQTERFNSLDAFKSGSVPVLVATDVAARGLDIPAVKLVLN 396
Query: 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ P Y HR GRTGR G G +++ E
Sbjct: 397 VTFPLTVEDYVHRIGRTGRAGSDGLAITMFTE 428
>gi|225557690|gb|EEH05975.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus G186AR]
Length = 487
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 195/392 (49%), Gaps = 51/392 (13%)
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
E F+ PT +QS P + DV+ + TGSGKTLA+ +P + KV + N + S
Sbjct: 88 EHFSKPTPIQSVTWPYLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEI-----NASHSSF 142
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ I AVI+ P+REL MQI ++ K + + + GGA++ Q AL+K +++
Sbjct: 143 R---ISAVIITPTRELAMQIYDQLVKFT--PNGVGLACIYGGASKDDQRRALKK--ASVI 195
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V TPGR+ + + L+ ++LVLDE D +L F + + IV
Sbjct: 196 VATPGRLKDFHSDESLNLKKVKYLVLDEADRMLDKGFEQDIKDIV--------------- 240
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
S + +RQT+M +AT P SV + A ++ +P+ V T G+LS
Sbjct: 241 STMPSSRKRQTVMFTATWPISVRKLATTFMKEPVTV-------------TIGGDLS---- 283
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
S +N + KQ + + P K ++L ++ +R +A+D V+ F ++
Sbjct: 284 -SDIRANTRIKQIVEVVKPENKE----SRLLSLLNQYQRGRNAMDK--VLVFCLYKKEAT 336
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
+ ++G K A +HGD+ + R +L FK+G V VLV +++ARGLD+ LV+N
Sbjct: 337 RIERFIRSKGFKVAGIHGDMNQTERFNSLNAFKSGSVPVLVATDVAARGLDIPAVKLVLN 396
Query: 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ P Y HR GRTGR G G +++ E
Sbjct: 397 VTFPLTVEDYVHRIGRTGRAGSDGLAITMFTE 428
>gi|189188460|ref|XP_001930569.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972175|gb|EDU39674.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 514
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 208/433 (48%), Gaps = 71/433 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF L + P L+ L PT +Q++ IP ILK D + S TG+GKT+A+ +PIL
Sbjct: 85 SFTSLNVAPWLVASLASMEIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTVAFSVPILQ 144
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K S + +G I AVIV P+REL +QI ++K + P K + + GG+
Sbjct: 145 KW------SEDPSG-------IFAVIVTPTRELAIQIYEQVKAISAPQSMKPIL-ITGGS 190
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCR---FLVLDEIDELLSFNFRE 286
++ Q AL ++P +V+ TPGR+AE I +G+ G R F+V DE D LL+ +
Sbjct: 191 DQRSQAIAL-ASRPHVVIATPGRLAEHIRTSGEDTICGLRRVKFVVFDEADRLLAPG-KG 248
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+M +E S L + RQT++ +ATV V+ + H P
Sbjct: 249 SMLPDLETC-----------LSVLPPKESRQTLLFTATVTPEVM----ALKHQP------ 287
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
PG L P+ S ++ D ++PP L+ Y T + HK
Sbjct: 288 ----------RAPGRL--PIFVSEVDTE------DLAIPPRLQQKYLQTPVTHK-----E 324
Query: 407 C-VHAL------DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
C +H L ++VI F N T+ + L + LH L + R + L +F
Sbjct: 325 CYLHVLLNTPVNSTKSVIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQSDRVSNLARF 384
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ R+LV +++ARGLD+ E LV+N D+P D Y HR GRT R GR GT ++ +
Sbjct: 385 RAQAARILVATDVAARGLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTSITFIGQ 444
Query: 520 PEVFVVKKMQKQL 532
+V +V ++ ++
Sbjct: 445 RDVDLVLAIETRV 457
>gi|417931546|ref|ZP_12574911.1| DEAD/DEAH box helicase [Propionibacterium acnes SK182B-JCVI]
gi|340775489|gb|EGR97542.1| DEAD/DEAH box helicase [Propionibacterium acnes SK182B-JCVI]
Length = 491
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 199/408 (48%), Gaps = 53/408 (12%)
Query: 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184
+E G P +Q+ +IP ++ D++ Q+ TG+GKTLA+ + IL ++ D+ G
Sbjct: 1 MEGVGIVSPFPIQAMSIPISVEGTDLIGQARTGTGKTLAFGITILQRITLPGDE---GWE 57
Query: 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKP 244
E K +A+++ P+REL +Q+ ++I D + V + GG Q +AL K
Sbjct: 58 ELTTKGKPQALVMCPTRELALQVSKDISTAASVRDAR-VLTVYGGVGYEPQIDAL-KAGI 115
Query: 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
IVVGTPGR+ ++S L R +VLDE DE+L F + ++ R
Sbjct: 116 DIVVGTPGRLLDLSQRKDLDLSHARIVVLDEADEMLDLGFLPDVENLI----------GR 165
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSG 364
P S RQT++ SAT+P ++ ARS + P+ V+A+
Sbjct: 166 TPTS-------RQTMLFSATMPAPIMTLARSQLNRPVHVRAEG----------------- 201
Query: 365 PMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
++ QA ++P + Y L K++ + R + A D + VI F R
Sbjct: 202 --------ADTQA-----TVPDTQQFVYQAHPLD-KIEIIGRILQANDVEKVIIFCRTKR 247
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
+ L RG KA +HGDL ++AR LKKF++ + +LV +++ARG+DV
Sbjct: 248 ACQRLSDDLNDRGFKARAIHGDLTQVAREKALKKFRHDDASILVATDVAARGIDVTGVSH 307
Query: 485 VVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
V+N + P D Y HR GRTGR G +G V++ + +V K + K L
Sbjct: 308 VINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADVARWKLIDKAL 355
>gi|406949690|gb|EKD80116.1| hypothetical protein ACD_40C00197G0004 [uncultured bacterium]
Length = 408
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 200/426 (46%), Gaps = 59/426 (13%)
Query: 96 VKKSLEIESAPFA-ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQS 154
VK++ +ES + ++F E + + + + +G++ PT +Q IP +L DV+ +
Sbjct: 39 VKQASTVESREYTPKHTFAEFAMDEQIKKNVLHKGYDKPTPIQDQVIPEVLAGRDVIGLA 98
Query: 155 YTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214
TG+GKT A+LLP++ KV + + G + + + ++V P+REL +QI+ E K
Sbjct: 99 STGTGKTAAFLLPLIDKVIESQKVPTLAGARDGTRGE-KVLVVTPTRELAVQIMEE-GKG 156
Query: 215 LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLD 274
+ +GG + RQ LR+N P VVGTPGR+ ++S +L R +VLD
Sbjct: 157 YAFGTRVFFTICIGGVDIGRQVRELRRN-PQFVVGTPGRLKDLSERRELRLSEYRTIVLD 215
Query: 275 EIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAAR 334
E+D +L F M ++ + R ER ++ SAT+ AR
Sbjct: 216 EVDRMLDMGFVNEMRDLIRQLPR-----------------ERHSLFFSATMSDKARVIAR 258
Query: 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV 394
+ H+P+ +Q ++ G+S N N +
Sbjct: 259 EFLHEPVTIQVES-------------------QGASENVNQD-----------------I 282
Query: 395 TKL--QHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLAR 452
KL + KV+ L + + + V+ F ++ +LEARG KA +HG+ + R
Sbjct: 283 VKLNGRSKVEVLHEMLIRPEFEKVLLFGRTKHGMERLTRELEARGFKATSIHGNKSQSQR 342
Query: 453 STTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGT 512
L FKN +V++L+ +++ARGLD+ V+N +LP Y HR GRTGR + G
Sbjct: 343 QRALSAFKNNQVQILLATDVAARGLDIDSVSHVINYELPETYEDYIHRIGRTGRADKTGY 402
Query: 513 VVSICE 518
++ +
Sbjct: 403 ALTFID 408
>gi|150025863|ref|YP_001296689.1| DEAD/DEAH box helicase [Flavobacterium psychrophilum JIP02/86]
gi|149772404|emb|CAL43884.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium psychrophilum JIP02/86]
Length = 644
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/443 (29%), Positives = 206/443 (46%), Gaps = 78/443 (17%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPI 168
N F +LGL LL + GF PTEVQ AIP +L K+ D+V + TG+GKT A+ P+
Sbjct: 2 NKFEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLLEKDIDLVALAQTGTGKTAAFGFPV 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ K+ ++N N +A+I++P+REL +QI E+K V + G
Sbjct: 62 IQKI-----DANNRN--------TQALILSPTRELCLQITNELKNYSKYEKGINVVAVYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ + Q +++ I+V TPGR+ ++ + + +LDE DE+L+ F E +
Sbjct: 109 GASITEQARDIKRG-AQIIVATPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAK 346
I+ P E+ T + SAT+P V R + + DP + V AK
Sbjct: 168 VNILSTT----------PD-------EKNTWLFSATMPAEVARIGKQFMTDPIEITVGAK 210
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N SGS++ + H Y + + + + L+R
Sbjct: 211 N-------------------SGSAT----------------VSHEYYLVNARDRYEALKR 235
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
A + F R + KL G AA LHGDL + R +K F+ ++++
Sbjct: 236 LADANPDIFSVVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQM 295
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV---- 522
LV +++ARG+DV VVN LP + Y HR+GRTGR G+ GT + I + E+
Sbjct: 296 LVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSEIRKIS 355
Query: 523 ---FVVKKMQKQLAVP--IQACE 540
++K+ ++ +P I+ CE
Sbjct: 356 SIERIIKQKFEEKVIPSGIEICE 378
>gi|416998824|ref|ZP_11939493.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ACS-068-V-Sch12]
gi|333976977|gb|EGL77836.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ACS-068-V-Sch12]
Length = 432
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/425 (27%), Positives = 202/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L++ L+++G PT +Q +IP + K +DV+ ++ TG+GKTLA+LLPIL
Sbjct: 3 SFKSLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+V TD+ + +I+AP+REL QI E K++ G + L+
Sbjct: 63 RV----------------HTDVHQEQVLIIAPTRELIKQISDEAKEI-GSILNVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIEAQLQQLGR-RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IENLIGQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+S P+S ++ ++ + DQ + Y + + K L +
Sbjct: 197 --------------MSKPVSVTAEGKHITLESIDQRV-------YMMNP-EEKTQRLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IEDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
Length = 419
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 197/431 (45%), Gaps = 70/431 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF EL L LL+ + +EG+ PT +QS AIP +L D++ + TG+GK+ A++LPIL
Sbjct: 2 SFKELKLIDPLLKAIHKEGYETPTPIQSQAIPVVLSGRDLLGCAQTGTGKSAAFILPILQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVG 228
++ L +K + ++A+++AP+REL +QI I L P + V G
Sbjct: 62 QLNSLPNK----------EKAVKALVLAPTRELAIQINESIATYGQLLPLKHQVV---YG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N + Q L+K I+V TPGR+ ++ L VLDE D +L F +
Sbjct: 109 GVNINTQISGLKKGI-DILVATPGRLLDLVGQRVLTLRAVSHFVLDEADRMLDMGFIHDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
++V + +RQT+ SAT+P + + A + +P+ V
Sbjct: 168 KKVVA-----------------LLPIKRQTLFFSATMPPEITKLANTLLKNPVRV----- 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
E P + + + +N H T+ +H D L +
Sbjct: 206 ---EVTPVSSTAEKVTQVVYAVDKANKPKLLLHLLKSEVRDHVLVFTRTKHGADRLVKF- 261
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L +G++AA +HG+ + AR L+ FK+G+++VL+
Sbjct: 262 ------------------------LAKQGVQAAAIHGNKSQNARQNALQAFKSGQLKVLI 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVV 525
+++ARG+DV E V+N DLP + Y HR GRTGR G G +S C E P + +
Sbjct: 298 ATDIAARGIDVEELKFVINFDLPNEPETYVHRIGRTGRAGASGKALSFCDLEERPYLQSI 357
Query: 526 KKMQKQLAVPI 536
+ Q A+P+
Sbjct: 358 NNLTNQ-AIPV 367
>gi|126728206|ref|ZP_01744022.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
E-37]
gi|126711171|gb|EBA10221.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
E-37]
Length = 425
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/425 (30%), Positives = 204/425 (48%), Gaps = 66/425 (15%)
Query: 115 LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGP 174
LGLPP LL L PT +QS AIP L DV+ + TG+GKT A+ LPI++ +
Sbjct: 2 LGLPPRLLTNLADLNITDPTPIQSQAIPHALNGRDVMGLAQTGTGKTAAFGLPIVTTI-- 59
Query: 175 LKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR 234
++D++ G + + +I+AP+REL QIV ++ + K + + GG + +
Sbjct: 60 MRDQTRPGPKQ------VHGLILAPTRELAKQIVDNLRAYAANTPVK-IGLVTGGNSING 112
Query: 235 QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEH 294
Q L K ++V TPGR+ ++ + RFLVLDE D++L F A+ +I
Sbjct: 113 QINRLAKGTD-LLVATPGRLIDLMEQKAVRLDATRFLVLDEADQMLDLGFIHALRQI--- 168
Query: 295 VGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354
A + ERQT++ SAT+P + A ++ DP+ ++
Sbjct: 169 --------------ARVLPKERQTMLFSATMPKQMAEIASAYLTDPVRIE---------- 204
Query: 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414
T PG P+ + + ++A L L H +D +H +A
Sbjct: 205 -VTPPGK---PVERIEQSVHFVEQKAKTPL------------LVHHLD-----LHRTEAA 243
Query: 415 TVIAFM-NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473
V A + +LK LE +G A +HG+ + R LK F+ GE+ VLV +++
Sbjct: 244 LVFARTKHGAEKLKR---HLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVATDVA 300
Query: 474 ARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV----FVVKKMQ 529
ARG+D+ V N DLP + +Y HR GRT R GR GT ++ C E+ +VK M
Sbjct: 301 ARGIDIPSVRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCSAEEMGEFKAIVKVMG 360
Query: 530 KQLAV 534
+++AV
Sbjct: 361 REIAV 365
>gi|432592524|ref|ZP_19828850.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE60]
gi|431131365|gb|ELE33444.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE60]
Length = 457
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAATSGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 206/428 (48%), Gaps = 69/428 (16%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
+A +F +LG+ L+E +R G+ PT +Q+ +IP L+N DV+ + TGSGKT A+ LP
Sbjct: 51 SAKTFKDLGIVDSLVEACDRLGYTNPTPIQAQSIPHALQNRDVIGLAETGSGKTAAFALP 110
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
I+ L DK S+ G +++AP+REL QI + L G V +V
Sbjct: 111 IIQA---LLDKPSHLFG----------LVLAPTRELAAQIAASFEAL-GSLVNLRVAVIV 156
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + Q AL K KP IVV TPGR+ + + ++LV+DE D LL +F
Sbjct: 157 GGLDMVAQAIALGK-KPHIVVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGP 215
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
++ +I++ + R ER+T + SAT+ + R+ DP+ +
Sbjct: 216 SIDKILKFIPR-----------------ERRTFLFSATMSSKIESLQRASLRDPVRI--- 255
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHY-YCVTKLQHKVDT-L 404
S SSS+ Q++ +++Y +C +K DT L
Sbjct: 256 --------------------SISSSSH--------QTVSTLIQNYIFCP---HNKKDTYL 284
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
V+ + ++ F + + L G A +HG L + AR L KF+ G
Sbjct: 285 VYLVNEYSGKKIVLFTRTVTETQRLAILLRTLGFGAIPIHGQLNQTARLGALNKFRAGSR 344
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
+LV +++ARGLD+ D+V+N D+P+DS Y HR GRT R G+ G ++I + ++ +
Sbjct: 345 DILVATDVAARGLDIPLVDVVINFDIPSDSKTYVHRVGRTARAGKSGKAITIMTQYDLEI 404
Query: 525 VKKMQKQL 532
+++ L
Sbjct: 405 YLRIEAAL 412
>gi|313667868|ref|YP_004048152.1| ATP-dependent RNA helicase [Neisseria lactamica 020-06]
gi|313005330|emb|CBN86763.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
Length = 457
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|153006338|ref|YP_001380663.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. Fw109-5]
gi|152029911|gb|ABS27679.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
Fw109-5]
Length = 455
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 189/399 (47%), Gaps = 69/399 (17%)
Query: 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166
+ SF EL L P L L R GF PT +Q+ AIP L DV+ + TG+GKT A+LL
Sbjct: 1 MSTTSFAELHLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLL 60
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
P++ ++ G+ G + A+++AP+REL +QI E+++ G + + +
Sbjct: 61 PLIDRLA----------GKPGTR----ALVLAPTRELALQIGEELERF-GHARRVRGAVI 105
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
+GG ++Q EALR+ + IV+ TPGR+ + G G LVLDE D +L F+
Sbjct: 106 IGGVGMAQQAEALRQKR-EIVIATPGRLVDHLEQGNARLDGIEALVLDEADRMLDMGFKP 164
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI+ R PK +RQT++ SAT+ V AR+ DP+ V+
Sbjct: 165 QLDRILR----------RLPK-------QRQTLLFSATMAGEVADFARAHLRDPVRVEV- 206
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ S A +A+Q + QH+ L
Sbjct: 207 ------------------------ARSGTTAARAEQQV---------FLADQHEKLPLLL 233
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ D + + F T++ D ++K R G K A +H D + R L FK+G R
Sbjct: 234 TLLERDGDSTLIF-TRTKRRADKIWKHIGRAGHKVARIHADRSQAQRRMALDGFKDGTYR 292
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRT 504
VLV +++ARG+DVAE VVN DLP Y HR GRT
Sbjct: 293 VLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRT 331
>gi|422110316|ref|ZP_16380378.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 462
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 194/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIPS L D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++ P+REL Q+ + +VGGA+
Sbjct: 65 LTKRSEKPGKGP---------RALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGAS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLMDLMRSGKVDFARLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P ++RQT++ SAT +V + AR DP +++ + V
Sbjct: 174 IVE-------ATP----------SDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DDQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|333908238|ref|YP_004481824.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333478244|gb|AEF54905.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 443
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/436 (29%), Positives = 212/436 (48%), Gaps = 68/436 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L LP +L+ + GF +E+Q+ +P+ L+ +D++ Q+ TG+GKT A+L+ +++
Sbjct: 64 FHDLNLPDRVLKSIAEMGFEYCSEIQAETLPTTLQGYDIIGQAQTGTGKTAAFLIAMITD 123
Query: 172 V--GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
PL+++ +N +I+AP+REL +QI E KL V LVGG
Sbjct: 124 FLDYPLEEERANNLAR--------GLIIAPTRELALQIADEAVKLTANCHLNVVA-LVGG 174
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ +Q++AL+ I+V TPGR+ + + + K+ + LVLDE D +LS F +
Sbjct: 175 LSYEKQKQALQTENVDILVATPGRLLDFARSRKVLLNKVECLVLDEADRMLSMGFIPDVK 234
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ + RQT++ SAT P + A+ W + P V +V+
Sbjct: 235 SIIRMTPHKET---------------RQTMLFSATFPKDIQALAKQWTYFPKEV---SVV 276
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQ----AKQADQSLPPALKHYYCVTKLQHKVDTLR 405
P E+ +N N++ +ADQ P L+
Sbjct: 277 PKEA-----------------TNKNIEQVIYTVEADQKWP-----------------VLK 302
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ + +Q I F N + +D +L+ + A L G++ + R TLK FK+G ++
Sbjct: 303 QLIEENGSQRTIIFANRRDETRDLYERLKMEKINCAILSGEVAQDKRVKTLKSFKDGSIQ 362
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ RG+ V +LVVN LP D Y HR GRTGR G G VS E + F++
Sbjct: 363 VLVATDVAGRGIHVDNVELVVNYALPEDPEDYVHRIGRTGRGGETGKSVSFASEDDAFMI 422
Query: 526 KKMQKQLAVPIQACEF 541
+++K + I+ CE+
Sbjct: 423 PEIEKTVGESIR-CEY 437
>gi|398406547|ref|XP_003854739.1| RNA-dependent ATPase [Zymoseptoria tritici IPO323]
gi|339474623|gb|EGP89715.1| hypothetical protein MYCGRDRAFT_84402 [Zymoseptoria tritici IPO323]
Length = 446
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 190/423 (44%), Gaps = 65/423 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LG+ L E GF PT +Q AIP L+ D++ + TGSGKT A+ LPIL
Sbjct: 37 TFADLGVVDSLCEACTALGFTKPTAIQREAIPIALEGKDIIGLAETGSGKTAAFALPILQ 96
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ L DK G +++AP+REL QI ++ + L G +VGG
Sbjct: 97 E---LLDKPQPMFG----------LVLAPTRELAYQISQQFEAL-GSLISVRCAVIVGGM 142
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ Q AL K KP IVV TPGR+ + + ++LV+DE D LL +F +
Sbjct: 143 DMVPQAIALAK-KPHIVVATPGRLLDHLENTKGFSLRQLKYLVMDEADRLLDLDFGPILD 201
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I + + R ER+T++ SAT+ + R+ P+ V
Sbjct: 202 KIFQVLPR-----------------ERRTMLFSATMSTKLNNLTRAALQQPVKVS----- 239
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+S SS + Q +P K Y V L
Sbjct: 240 ----------------ISSSSYQTVKNLMQRYIFIPHKFKDIYLVYLLNE---------- 273
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
QT I F + F L A G A LHG + + AR L KF+ G +LV
Sbjct: 274 -FAGQTCIVFTRTINETARIAFLLRALGRSAIPLHGQMNQSARLGALNKFRGGHRDILVA 332
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ DLV+N DLP DS Y HR GRT R G+ G +S+ + ++ + ++++
Sbjct: 333 TDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRIE 392
Query: 530 KQL 532
K L
Sbjct: 393 KAL 395
>gi|15677281|ref|NP_274434.1| ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|385338257|ref|YP_005892130.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|385852957|ref|YP_005899471.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|416161192|ref|ZP_11606298.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
gi|416169998|ref|ZP_11608264.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|416187306|ref|ZP_11614176.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|416196279|ref|ZP_11618049.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|418288600|ref|ZP_12901066.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM233]
gi|421559613|ref|ZP_16005486.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|427826351|ref|ZP_18993406.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|433465367|ref|ZP_20422848.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|433473807|ref|ZP_20431167.1| helicase domain protein [Neisseria meningitidis 97021]
gi|433475839|ref|ZP_20433176.1| helicase domain protein [Neisseria meningitidis 88050]
gi|433479988|ref|ZP_20437277.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|433481376|ref|ZP_20438643.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|433484355|ref|ZP_20441579.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|433486626|ref|ZP_20443819.1| helicase domain protein [Neisseria meningitidis 97014]
gi|433488701|ref|ZP_20445861.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
gi|433490749|ref|ZP_20447871.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|433505294|ref|ZP_20462232.1| helicase domain protein [Neisseria meningitidis 9506]
gi|433507424|ref|ZP_20464330.1| helicase domain protein [Neisseria meningitidis 9757]
gi|433509527|ref|ZP_20466396.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|433511627|ref|ZP_20468451.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
gi|433513737|ref|ZP_20470526.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|433515890|ref|ZP_20472658.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|433517846|ref|ZP_20474591.1| helicase domain protein [Neisseria meningitidis 96023]
gi|433520192|ref|ZP_20476911.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|433524366|ref|ZP_20481025.1| helicase domain protein [Neisseria meningitidis 97020]
gi|433528489|ref|ZP_20485098.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|433530695|ref|ZP_20487280.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|433532958|ref|ZP_20489521.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|433534682|ref|ZP_20491222.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|433541270|ref|ZP_20497721.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
gi|7226661|gb|AAF41783.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|316985805|gb|EFV64748.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|319410671|emb|CBY91048.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|325128474|gb|EGC51354.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
gi|325130493|gb|EGC53250.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|325136534|gb|EGC59138.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|325140373|gb|EGC62894.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|325199961|gb|ADY95416.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|372201554|gb|EHP15466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM233]
gi|402335412|gb|EJU70678.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|432202566|gb|ELK58625.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|432208948|gb|ELK64919.1| helicase domain protein [Neisseria meningitidis 88050]
gi|432209268|gb|ELK65237.1| helicase domain protein [Neisseria meningitidis 97021]
gi|432215726|gb|ELK71611.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|432218133|gb|ELK73996.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|432220286|gb|ELK76109.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|432221266|gb|ELK77078.1| helicase domain protein [Neisseria meningitidis 97014]
gi|432222780|gb|ELK78565.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
gi|432226933|gb|ELK82651.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|432240586|gb|ELK96120.1| helicase domain protein [Neisseria meningitidis 9506]
gi|432240698|gb|ELK96231.1| helicase domain protein [Neisseria meningitidis 9757]
gi|432246915|gb|ELL02361.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|432247023|gb|ELL02468.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
gi|432247046|gb|ELL02489.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|432252816|gb|ELL08166.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|432252963|gb|ELL08310.1| helicase domain protein [Neisseria meningitidis 96023]
gi|432253804|gb|ELL09141.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|432259010|gb|ELL14288.1| helicase domain protein [Neisseria meningitidis 97020]
gi|432265290|gb|ELL20486.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|432265960|gb|ELL21150.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|432266781|gb|ELL21963.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|432271424|gb|ELL26549.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|432276977|gb|ELL32027.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
Length = 457
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 195/413 (47%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
Length = 473
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/423 (29%), Positives = 194/423 (45%), Gaps = 62/423 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++ P+REL Q+ + +VGGA+
Sbjct: 65 LTKRSEKPGKGP---------RALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGAS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLMDLMQSGKVDFTRLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P A+RQT++ SAT +V + AR DP +++ + V
Sbjct: 174 IVE-------ATP----------ADRQTLLFSATWDGAVGKLARKLTKDPEVIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DDQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QLA 533
+
Sbjct: 364 YIG 366
>gi|26247679|ref|NP_753719.1| ATP-dependent RNA helicase DbpA [Escherichia coli CFT073]
gi|26108081|gb|AAN80281.1|AE016760_140 ATP-independent RNA helicase dbpA [Escherichia coli CFT073]
Length = 457
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|392541116|ref|ZP_10288253.1| ATP-dependent RNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 473
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/425 (29%), Positives = 192/425 (45%), Gaps = 64/425 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL P + + + +G++ PT +Q AIP+IL+ DV+ + TG+GKT + LP+L
Sbjct: 2 SFSHLGLAPEINQAVVEQGYDKPTPIQEQAIPAILEGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ G + ++ A+I+ P+REL Q+ + + L + + + GG
Sbjct: 62 KLIA---------GTKPRANNVRALILTPTRELADQVWQSV-ALYSKHLPISSEVVYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LRK ++V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMMKLRKGI-DVLVATPGRLLDLYQQNAVKFDDLEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + + RQ +M SAT + A+ HDP+ +
Sbjct: 171 IIK-----------------VLPSCRQNLMFSATFSEEIRALAKGLIHDPVEI------- 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S + +N AK Q + P K + L+ V
Sbjct: 207 ------------------SVAPANSTAKSVTQWVYPVDK--------SKRTSLLKHLVQT 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V LE + AA +HG+ + AR L FKNGEVRVLV
Sbjct: 241 HDWQQVLVFTRTKHGANRLVKDLEKDKINAAAIHGNKSQSARMKALAGFKNGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE---PEVFVVKK 527
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S + ++F +++
Sbjct: 301 DIVARGLDIQELPHVVNFDLPNVYEDYVHRIGRTGRAGATGEAISFVTQETASDLFGIER 360
Query: 528 MQKQL 532
+ +QL
Sbjct: 361 LIQQL 365
>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 684
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/422 (29%), Positives = 194/422 (45%), Gaps = 65/422 (15%)
Query: 114 ELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG 173
E GL L L++ G VQ + +++K D+V +S TGSGKTLA+ LPI+ K+
Sbjct: 85 EFGLSDTLFSNLKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEKL- 143
Query: 174 PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS 233
SG + + A+I+ P+REL Q+ E+ +L P K +VGG
Sbjct: 144 ---------LSRSGSRRNPGALILLPTRELATQVSSELSRL-SPQLKTVT--IVGGVPYH 191
Query: 234 RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
QE +R IVVGTPGRI ++ L +F VLDE D +L F F+EA+ I+
Sbjct: 192 SQESRIRAGVD-IVVGTPGRIMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILS 250
Query: 294 HVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLES 353
V P++ RQ +M SAT P V + + D + +
Sbjct: 251 WV----------PET-------RQCVMWSATFPKWVTSLTKKYLKDAVTID--------- 284
Query: 354 MPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDA 413
+ GS + +P + H ++V L+R + +
Sbjct: 285 ------------LVGSE----------EAHVPTTVSHKAINVPSNYRVVALQRILEKYAS 322
Query: 414 Q-TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472
Q + F + + LE G LHGDL + R++T++ F+ G V+ L ++
Sbjct: 323 QGQSLVFTETKHEANEIANGLE--GCNVQALHGDLSQGVRASTMQNFRKGLVKTLACTDI 380
Query: 473 SARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
+ARGLD+A DLVV+ LP D ++ HRAGRTGR G+ GT + E E +K ++ +
Sbjct: 381 AARGLDIANVDLVVHYRLPNDRENFVHRAGRTGRAGKTGTSIVFFENQEYRDIKDLENRF 440
Query: 533 AV 534
+
Sbjct: 441 KI 442
>gi|259418826|ref|ZP_05742743.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
TrichCH4B]
gi|259345048|gb|EEW56902.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
TrichCH4B]
Length = 442
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 197/425 (46%), Gaps = 60/425 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + LP L R+E GFN PT +Q+ AIP L DV+ + TG+GKT A+ +P++++
Sbjct: 4 FSTMDLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLVAQ 63
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ K + G + +I+AP+REL QI ++ L S K +VGG +
Sbjct: 64 MLEYGQKPAAGT--------VRGLILAPTRELANQIAETLRGLTEGSPLK-TGLVVGGVS 114
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q L + I+V TPGR+ +I L C FLVLDE D++L F A+ +I
Sbjct: 115 INPQINRLSRGTD-ILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKI 173
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
A + +RQT++ SAT+P + A ++ P+ ++
Sbjct: 174 -----------------AALLPEKRQTMLFSATMPKQMNEIANAYLKSPVRIEV------ 210
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
T PG A + QS+ ++ + + H
Sbjct: 211 -----TPPGK--------------PATKVTQSV------HFIAKAEKLSLLKELLAKH-- 243
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D + + F ++ + L+ G KAA +HG+ + R LK FK+GE+ VLV +
Sbjct: 244 DGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVLVATD 303
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ + V N +LP Y HR GRT R G+ G V+ C E+ +K +QK
Sbjct: 304 VAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGDLKAIQKT 363
Query: 532 LAVPI 536
+ + I
Sbjct: 364 MGITI 368
>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 434
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/426 (28%), Positives = 200/426 (46%), Gaps = 61/426 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L LL+ L + G+ P+ +Q IP IL DV+ + TG+GKT + LPIL +
Sbjct: 3 FSKLDLIQPLLDALHKSGYKTPSPIQQKVIPLILNGQDVMAAAQTGTGKTAGFSLPILQR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ K S+N +I+ P+REL Q+ + ++K ++ + GG
Sbjct: 63 LSEGKRPSANS---------ARCLILTPTRELAEQVHQSVQKYAANLHLNSIV-VYGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q LR+ ++V TPGR+ ++ + + FLVLDE D +L F ++ RI
Sbjct: 113 INPQMLKLRRGT-DVLVATPGRLLDLMEQNAVRFNDLEFLVLDEADRMLDMGFLPSIKRI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ G P++ RQT++ SAT S+ ++ + +P LV+ +
Sbjct: 172 I-------GKLPKK----------RQTLLFSATFSESIKAISQQFLTNPSLVETEQT--- 211
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ +++ D+ PAL Y H+ D L
Sbjct: 212 ---------------NTTAATVKQWIHPVDKKQKPALLSYLIG---HHRWDQL------- 246
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ F+ R LE RG+KA +HG + AR+ L +FK+G+V VLV +
Sbjct: 247 -----LVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTVLVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ + LV+N DLP + Y HR GRTGR G +GT +S+ EV ++ +Q
Sbjct: 302 VAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGTAISLVSADEVDDLRAIQDL 361
Query: 532 LAVPIQ 537
+ P++
Sbjct: 362 IRKPLE 367
>gi|409123076|ref|ZP_11222471.1| ATP-dependent RNA helicase [Gillisia sp. CBA3202]
Length = 420
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 203/420 (48%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L L + +++ G+ PT +Q+ +IP+IL+ D++ + TG+GKT A+ +P +
Sbjct: 2 TFNDLQLSEPLSKAVQKVGYTTPTPIQAQSIPAILQGRDILGCAQTGTGKTAAFSIPTIQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L +NG G+KT I+++I+ P+REL +QI + + SD K + + GG
Sbjct: 62 ---LLNSNLNNG----GRKTTIKSLILTPTRELAIQIGESLSEYGQFSDLKHLV-IFGGV 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N++ Q ALR N I+V TPGR+ ++ G + LDE D +L F +H
Sbjct: 114 NQNSQTRALR-NGVDILVATPGRLLDLMDQGFISLSNIEIFTLDEADRMLDMGF---VHD 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
K + +RQT+ SAT+P S+I A S ++PL V +V P
Sbjct: 170 --------------VKKVIKKIPVKRQTLFFSATMPNSIIDLANSILNNPLKV---SVTP 212
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ S A++ Q + Y + K K + L +
Sbjct: 213 VSST----------------------AERIGQEV-------YFIDKTNKK-NLLIDLLKT 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+A V+ F V L G+KA +HG+ + AR LK FK+ RVLV
Sbjct: 243 SEADRVLVFTRTKHGANKVVKDLIKVGIKAEAIHGNKTQNARQKALKNFKDKTTRVLVAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + LV+N ++P + Y HR GRTGR G G +S C+ E +K +QK
Sbjct: 303 DIAARGIDIDDLALVINFEIPNIAETYVHRIGRTGRAGASGKAISFCDFEEKAYLKDIQK 362
>gi|375133487|ref|YP_005049895.1| DEAD/DEAH box helicase [Vibrio furnissii NCTC 11218]
gi|315182662|gb|ADT89575.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
Length = 406
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 198/404 (49%), Gaps = 64/404 (15%)
Query: 121 LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV--GPLKDK 178
++ERL G + PTE+Q+ AIP +L+ DV+ + TG+GKT A+ LP++ + PL+ +
Sbjct: 1 MVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRFVDHPLQRE 60
Query: 179 SSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEA 238
++ DI A+++ P+REL Q+ ++ S+ K V GG + + Q++
Sbjct: 61 PNS--------KDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAY-GGTSMNVQKQN 111
Query: 239 LRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
LR I++ TPGR+ + + L+ LVLDE D +L F + R++
Sbjct: 112 LRGGAD-ILIATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRK---- 166
Query: 299 SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATG 358
M+ ERQT+ SAT + A +P+ VQ V P
Sbjct: 167 -------------MQHERQTLFFSATFDSKIKAFAHRMMQNPVEVQ---VTP-------- 202
Query: 359 PGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIA 418
SN A +Q + P K + K + L + + + Q V+
Sbjct: 203 --------------SNSTADTVEQMVYPVDK--------KRKRELLAYLIGSRNWQQVLV 240
Query: 419 FMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGL 477
F T+Q DA+ + L+ G+KAA ++GD + AR L FK+G+VR L+ +++ARG+
Sbjct: 241 F-TRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGI 299
Query: 478 DVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
D+A+ + VVN D+P + Y HR GRTGR G+ G VS+ E
Sbjct: 300 DIAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDE 343
>gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group]
gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group]
gi|393794480|dbj|BAM28951.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
Length = 1398
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 189/421 (44%), Gaps = 67/421 (15%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E+ P +F G PP +L+ + GF PT +Q+ P L+N D+V + TGSGKTL
Sbjct: 597 ENVPPPFMTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL 656
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
YL+P L+ +N +++AP+REL QI E K G S + +
Sbjct: 657 GYLIPAFIH---LRRYQNN------PMLGPTVLVLAPTRELASQIQDEAVKF-GRSSRVS 706
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GG ++ Q L + IVV TPGR+ +I K+ H FLVLDE D +L
Sbjct: 707 CTCLYGGTSKGLQLRELERGA-DIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDM 765
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +IV+ + R RQT+M +AT P V + A DP+
Sbjct: 766 GFEPQIRKIVDEIPR-----------------NRQTLMYTATWPKEVTKIAGDLLKDPVQ 808
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V N+ ++ + A N Q + +PP +D
Sbjct: 809 V---NIGSIDELVA-----------------NKSITQYVEVVPP--------------LD 834
Query: 403 TLRRCVHALDAQT----VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
RR L AQ VI F + T+++ D + + R AA +HGD + R L +
Sbjct: 835 KQRRLEQILRAQERGSKVIIFCS-TKKMCDQLARDIGRSFGAASIHGDKSQAERDNVLNQ 893
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
F+ G +LV +++ARGLD+ + +V+N D PT Y HR GRTGR G G +
Sbjct: 894 FRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFS 953
Query: 519 E 519
E
Sbjct: 954 E 954
>gi|432568381|ref|ZP_19804901.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE53]
gi|431101575|gb|ELE06491.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE53]
Length = 457
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|383807106|ref|ZP_09962667.1| ATP-dependent RNA helicase [Candidatus Aquiluna sp. IMCC13023]
gi|383299536|gb|EIC92150.1| ATP-dependent RNA helicase [Candidatus Aquiluna sp. IMCC13023]
Length = 439
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 195/409 (47%), Gaps = 64/409 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ + E LE +G P +Q AIP L DV+ Q+ TG+GKTL + LP++
Sbjct: 2 SFKSLGIDADICEALESKGITSPFPIQEQAIPVALSGTDVIGQAKTGTGKTLGFGLPLIQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK-KAVQQLVGG 229
+G N G ++A++V P+REL +Q+ ++ +L +++ V + GG
Sbjct: 62 ALGE--------NPAPG----VQALVVVPTRELALQVSEDL--ILATTNRPTTVVAIYGG 107
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
Q AL + IVVGTPGR+ +++ ++ F+VLDE DE+L F +
Sbjct: 108 KAYEGQVAAL-EGGAQIVVGTPGRLLDLAKQKLMNLSNVTFMVLDEADEMLDLGFLPDVE 166
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++ S P +RQT++ SAT+P +++ AR + + P+ ++
Sbjct: 167 KLF------SLTPP-----------QRQTMLFSATMPAAILSLARRYQNRPIHIR----- 204
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+S P G + +AD +K Y K + + R +
Sbjct: 205 ------------VSDPDEGKT--------KAD------IKQYVYRAHALDKDEVVGRILQ 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A I F+ RQ +L RG AA LHGD+ + AR ++ F+ G+ +LV
Sbjct: 239 AEGRGKTIIFVRTKRQSAKLAEELIDRGFNAAPLHGDMSQDARERSMASFREGKKEILVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
E++ARG+DV + V+N +P D Y HR GRTGR G+ G V+ +
Sbjct: 299 TEVAARGIDVDDVTHVINYSVPEDEKAYLHRTGRTGRAGKLGVAVTFVD 347
>gi|212722850|ref|NP_001131651.1| uncharacterized protein LOC100193011 [Zea mays]
gi|194692160|gb|ACF80164.1| unknown [Zea mays]
gi|413934956|gb|AFW69507.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 455
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/465 (27%), Positives = 221/465 (47%), Gaps = 65/465 (13%)
Query: 88 SDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN 147
++G A V + E E+A A++F ELG+ L+E + G+ PT +Q+ AIP L+
Sbjct: 2 ANGDAAVEVGGNGEQEAAARQASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQG 61
Query: 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207
D++ + TGSGKT A+ LPIL ++ SN E A +++P+REL +QI
Sbjct: 62 KDLIALAQTGSGKTGAFALPILQEL------LSNRQAEQS----FFACVLSPTRELAIQI 111
Query: 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTH 266
+ + L G + LVGG +R +Q ++ K +P IVVGTPGR+ + ++
Sbjct: 112 AEQFEAL-GSAIGLRCSVLVGGVDRVQQVLSIGK-RPHIVVGTPGRLLDHLTETKGFSLK 169
Query: 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326
++LVLDE D+LL+ F +++ I+ + PK +R+T + SAT+
Sbjct: 170 KIKYLVLDEADKLLNVEFEKSLDDILSEM----------PK-------DRRTFLFSATMT 212
Query: 327 FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQA-KQADQSLP 385
V + R+ +P V+ SS S + + KQ +P
Sbjct: 213 KKVNKLQRACLRNPAKVEV-----------------------SSKYSTVDSLKQEFYFVP 249
Query: 386 PALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHG 445
K Y + L +++++ ++ F+ + L G+KA + G
Sbjct: 250 ADDKDCYLLHVLNERLESM-----------IMIFVRTCESTRLLALMLRNLGLKAMSISG 298
Query: 446 DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505
+ + R L +FK + +L+ ++++RGLD+ D+V+N D+P +S Y HR GRT
Sbjct: 299 QMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTA 358
Query: 506 RLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGK 550
R GR G VS+ + E +++ L I C+ ++I K
Sbjct: 359 RAGRSGYAVSLVNQYEAQWFVLIEQLLGKKIDQCKVDRDEVLILK 403
>gi|227886220|ref|ZP_04004025.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
gi|386629118|ref|YP_006148838.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. 'clone D
i2']
gi|386634038|ref|YP_006153757.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. 'clone D
i14']
gi|386638913|ref|YP_006105711.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
gi|432411598|ref|ZP_19654270.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE39]
gi|432431540|ref|ZP_19673976.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE187]
gi|432436399|ref|ZP_19678790.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE188]
gi|432456372|ref|ZP_19698566.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE201]
gi|432495347|ref|ZP_19737155.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE214]
gi|432504116|ref|ZP_19745849.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE220]
gi|432523536|ref|ZP_19760670.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE230]
gi|432607257|ref|ZP_19843448.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE67]
gi|432650823|ref|ZP_19886582.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE87]
gi|432783321|ref|ZP_20017504.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE63]
gi|432844056|ref|ZP_20077110.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE141]
gi|432978046|ref|ZP_20166869.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE209]
gi|432995102|ref|ZP_20183716.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE218]
gi|432999625|ref|ZP_20188158.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE223]
gi|433057682|ref|ZP_20244759.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE124]
gi|433086949|ref|ZP_20273339.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE137]
gi|433115259|ref|ZP_20301070.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE153]
gi|433124882|ref|ZP_20310463.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE160]
gi|433138942|ref|ZP_20324220.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE167]
gi|433148883|ref|ZP_20333927.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE174]
gi|433207473|ref|ZP_20391165.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE97]
gi|433212244|ref|ZP_20395852.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE99]
gi|442607758|ref|ZP_21022523.1| ATP-dependent RNA helicase [Escherichia coli Nissle 1917]
gi|227836424|gb|EEJ46890.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
gi|307553405|gb|ADN46180.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
gi|355420017|gb|AER84214.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. 'clone D
i2']
gi|355424937|gb|AER89133.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. 'clone D
i14']
gi|430936098|gb|ELC56392.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE39]
gi|430954615|gb|ELC73485.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE187]
gi|430963410|gb|ELC80995.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE188]
gi|430983893|gb|ELD00549.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE201]
gi|431025484|gb|ELD38588.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE214]
gi|431040984|gb|ELD51518.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE220]
gi|431053682|gb|ELD63287.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE230]
gi|431139603|gb|ELE41399.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE67]
gi|431192562|gb|ELE91912.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE87]
gi|431330688|gb|ELG17955.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE63]
gi|431396061|gb|ELG79549.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE141]
gi|431481557|gb|ELH61271.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE209]
gi|431509315|gb|ELH87586.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE218]
gi|431511998|gb|ELH90127.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE223]
gi|431572821|gb|ELI45646.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE124]
gi|431607943|gb|ELI77297.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE137]
gi|431636109|gb|ELJ04277.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE153]
gi|431648147|gb|ELJ15547.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE160]
gi|431663225|gb|ELJ29988.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE167]
gi|431673627|gb|ELJ39848.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE174]
gi|431731674|gb|ELJ95174.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE97]
gi|431735479|gb|ELJ98838.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE99]
gi|441711230|emb|CCQ08500.1| ATP-dependent RNA helicase [Escherichia coli Nissle 1917]
Length = 457
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a]
gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
ED1a]
Length = 457
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEINST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase [Neisseria meningitidis 053442]
gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
053442]
Length = 462
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 194/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L K
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQK 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++ P+REL Q+ + +VGGA+
Sbjct: 65 LTKRSEKPGKGP---------RALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGAS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P ++RQT++ SAT +V + AR DP +++ + V
Sbjct: 174 IVE-------ATP----------SDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DDQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
Length = 611
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/460 (27%), Positives = 215/460 (46%), Gaps = 83/460 (18%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P +F LGL L+++ E G PT++Q I +L +V+ + TGSGKT A+
Sbjct: 174 PQVNTTFAALGLKQWLVKQCEAMGLKHPTDIQVNTIKHVLAGRNVIGCAKTGSGKTAAFA 233
Query: 166 LPILSKV-----GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL-LGPSD 219
LPIL ++ GP AV++ P+REL QI + + L G +
Sbjct: 234 LPILHRLSDDPYGPF------------------AVVLTPTRELAFQIAEQFRALGKGINL 275
Query: 220 KKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDE 278
++AV +VGG + +Q L K +P +++ TPGR+A+ +++ +L RFLVLDE D
Sbjct: 276 REAV--VVGGVDMMQQSLVLAK-RPHVIIATPGRLADHLNSNSQLSLARARFLVLDEADR 332
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
LL F ++RI+ + +NP +RQT++ SAT+
Sbjct: 333 LLEEGFSPDLNRILA-----AASNP-----------QRQTLLFSATI------------- 363
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSL---PPALKHYYCVT 395
KN+ LESM ++S + + +S DQ P +K Y
Sbjct: 364 ------TKNIANLESM------SMSNVVHYETKSSVATVTTLDQRFVITPAKVKDCYLSY 411
Query: 396 KLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455
L D +++I F ++ R + ++A G + LH ++ + R +
Sbjct: 412 LLGQHED-----------KSIIVFTSSCRNCETITRMIKALGFRCVALHSEMSQSMRLGS 460
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
L KFK+ V +L+ ++++RGLD+ LV+N D+P S Y HR GRT R GR G V+
Sbjct: 461 LAKFKSSIVNILIATDVASRGLDIPTVKLVINNDVPRTSTDYVHRVGRTARAGRGGMAVT 520
Query: 516 ICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEKT 555
+ ++ +++ ++ ++ V + A E ++ + T
Sbjct: 521 FVTQYDIELIQHIESKIKVKLSALTMDEDAALVNLNDVTT 560
>gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
gi|432679904|ref|ZP_19915289.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE143]
gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
gi|431222327|gb|ELF19609.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE143]
Length = 457
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAITAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-134-V-Col7a]
gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-134-V-Col7a]
Length = 432
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 200/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L+ L+++G PT +Q +IP + K +D++ ++ TG+GKTLA+LLPIL
Sbjct: 3 SFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
++ TD+ + +I+AP+REL QI E K+LG + L+
Sbjct: 63 RI----------------HTDVHQEQVLIIAPTRELIKQISDE-AKVLGAVLDVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIESQLQQLGR-RPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IENLIGQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
++ P+S ++ ++ DQ + Y + + K L +
Sbjct: 197 --------------MTKPVSVTAEGKHITLDSIDQRV-------YMMNP-EDKTPRLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IQEDNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|395800586|ref|ZP_10479858.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
gi|395436994|gb|EJG02916.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
Length = 634
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/441 (28%), Positives = 205/441 (46%), Gaps = 74/441 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPI 168
N F +LGL LL+ + GF P+EVQ AIP +L K+ D+V + TG+GKT A+ P+
Sbjct: 2 NKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ K+ + +A++++P+REL +QI E+K V + G
Sbjct: 62 IQKI-------------DADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ + Q +++ I+V TPGR+ ++ G ++ + VLDE DE+L+ F + +
Sbjct: 109 GASITEQAREIKRG-AQIIVATPGRMQDMINRGLVNIKNIDYCVLDEADEMLNMGFYDDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ P E+ T + SAT+P V R A+ + DPL +
Sbjct: 168 VSILSDT----------PD-------EKSTWLFSATMPQEVARIAKQFMSDPLEI----- 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
G N SGSS+ + H + + + + + L+R
Sbjct: 206 -------TVGTKN-----SGSST----------------VSHEFYLVNARDRYEALKRLA 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A + F R + KL G AA LHGDL + R +K F+ ++++LV
Sbjct: 238 DANPDIFSVVFCRTKRDTQAIAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE---VFVV 525
+++ARG+DV VVN LP + Y HR+GRTGR G+ GT + I + E + +
Sbjct: 298 ATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISTI 357
Query: 526 KKMQKQLAVP------IQACE 540
+++ KQ V I+ CE
Sbjct: 358 ERIIKQKFVEKTIPSGIEICE 378
>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
Length = 610
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 193/422 (45%), Gaps = 64/422 (15%)
Query: 119 PLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDK 178
P +LE L G++ P+ +Q AAIP ++ D+V Q+ TG+GKT A+ LP+L+
Sbjct: 58 PEILEALAAIGYSEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLA-------- 109
Query: 179 SSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEA 238
G ++ + +++AP+REL +Q+ + + GGA+ Q
Sbjct: 110 -----GLDAEQRKPQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHH 164
Query: 239 LRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
LR+ +VVGTPGR+ + G L R LVLDE DE+L F + + ++
Sbjct: 165 LRRGA-QVVVGTPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVL------ 217
Query: 299 SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATG 358
G P + RQ ++ SAT+P + R ++ +
Sbjct: 218 -GQLPEQ----------RQVVLFSATMPAEIRRISQQY---------------------- 244
Query: 359 PGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIA 418
L+GP + ++ K AD S ++ + K+ L R + + ++ VI
Sbjct: 245 ---LNGP-----AEITIRTKAADAS---RIRQRFLTVPAPLKLAALERVLESETSEGVII 293
Query: 419 FMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLD 478
F LEA G A L+GD+ + R T+++ KNG+V VLV +++ARGLD
Sbjct: 294 FARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVATDVAARGLD 353
Query: 479 VAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQA 538
V LV+N D+P D Y HR GRTGR GR G + E + +++ PI+
Sbjct: 354 VERIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLERAAGKPIEP 413
Query: 539 CE 540
E
Sbjct: 414 ME 415
>gi|401679589|ref|ZP_10811516.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219523|gb|EJO50391.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 432
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 200/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L+ L+++G PT +Q +IP + K +D++ ++ TG+GKTLA+LLPIL
Sbjct: 3 SFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
++ TD+ + +I+AP+REL QI E K+LG + L+
Sbjct: 63 RI----------------HTDVHQEQVLIIAPTRELIKQISDE-AKVLGAVLDVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIESQLQQLGR-RPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IENLIGQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
++ P+S ++ ++ DQ + Y + + K L +
Sbjct: 197 --------------MTKPVSVTAEGKHITLDSIDQRV-------YMMNP-EDKTPRLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IQEDNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|282848965|ref|ZP_06258354.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ATCC 17745]
gi|282581240|gb|EFB86634.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ATCC 17745]
Length = 432
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 201/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L+ L+++G PT +Q +IP + K +DV+ ++ TG+GKTLA+LLPIL
Sbjct: 3 SFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+V TD+ + +I+AP+REL QI E K+L G + L+
Sbjct: 63 RV----------------HTDVHQEQVLIIAPTRELIKQISDEAKEL-GSILNVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIEAQLQQLGR-RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IENLISQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+S P+S ++ ++ + DQ + Y + + K L +
Sbjct: 197 --------------MSKPISVTAEGKHITLESIDQRV-------YMMNP-EEKTQRLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IEDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|269797693|ref|YP_003311593.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|269094322|gb|ACZ24313.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
Length = 432
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 201/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L+ L+++G PT +Q +IP + K +DV+ ++ TG+GKTLA+LLPIL
Sbjct: 3 SFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+V TD+ + +I+AP+REL QI E K+L G + L+
Sbjct: 63 RV----------------HTDVHQEQVLIIAPTRELIKQISDEAKEL-GSILNVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIEAQLQQLGR-RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IENLISQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+S P+S ++ ++ + DQ + Y + + K L +
Sbjct: 197 --------------MSKPISVTAEGKHITLESIDQRV-------YMMNP-EEKTQRLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IEDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-049-V-Sch6]
gi|429760012|ref|ZP_19292504.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica KON]
gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-049-V-Sch6]
gi|429178724|gb|EKY19996.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica KON]
Length = 432
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 200/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L+ L+++G PT +Q +IP + K +D++ ++ TG+GKTLA+LLPIL
Sbjct: 3 SFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
++ TD+ + +I+AP+REL QI E K+LG + L+
Sbjct: 63 RI----------------HTDVHQEQVLIIAPTRELIKQISDE-AKVLGAVLDVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIESQLQQLGR-RPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IENLIGQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
++ P+S ++ ++ DQ + Y + + K L +
Sbjct: 197 --------------MTKPVSVTAEGKHITLDSIDQRV-------YMMNP-EDKTPRLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IQEDNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|416336025|ref|ZP_11672673.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
gi|433197982|ref|ZP_20381898.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE94]
gi|320195643|gb|EFW70268.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
gi|431723919|gb|ELJ87863.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE94]
Length = 457
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
Length = 464
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 197/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + A+RQ ++ SAT + A+
Sbjct: 172 LK-----------------LLPAKRQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|380027508|ref|XP_003697465.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 607
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 194/418 (46%), Gaps = 56/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
+++ ++ P F E PP +LE + ++G++ PT +Q+ P L D+V + TGS
Sbjct: 102 TIKGDNIPNPIQYFEEGNFPPYVLEEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGS 161
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL Y+LP + + + + SNG+G A+I+AP+REL QI +E+ G +
Sbjct: 162 GKTLGYVLPAIVHI-IHQPRLSNGDGPI-------ALILAPTRELAQQI-QEVANCFGEA 212
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ GGA + Q L + I + TPGR+ + G + C +LVLDE D
Sbjct: 213 AGVRNTCIFGGAPKGPQAHDLERG-VEICIATPGRLIDFLERGTTNLRRCTYLVLDEADR 271
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +I+E + R +RQ +M SAT P V A +
Sbjct: 272 MLDMGFEPQIRKIIEQI-----------------RPDRQVLMWSATWPKEVRALAEDFLS 314
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
D + + G ++ S++++ +Q Q LK Y + ++
Sbjct: 315 DYMHLNI------------------GSLTLSANHNIIQIVDVCQEFEKDLKLYRLLQEIG 356
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
++ + I F+ R++ D + G +A +HGD + R L++
Sbjct: 357 NEKEN-----------KTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQE 405
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK+G +LV +++ARGLDV + V+N D P+ S Y HR GRTGR + GT +
Sbjct: 406 FKSGRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAF 463
>gi|218768426|ref|YP_002342938.1| ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
gi|121052434|emb|CAM08770.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
Length = 457
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ ++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQDTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|302847755|ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
nagariensis]
gi|300259253|gb|EFJ43482.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
nagariensis]
Length = 535
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 204/452 (45%), Gaps = 60/452 (13%)
Query: 67 SNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEI--ESAPFAANSFLELGLPPLLLER 124
SN PK + V + S+ ++A K + + + P SF E P +L
Sbjct: 68 SNLPKFEKCFYLEHPAVGSRSSEQVEAFRRSKQIHVYGDGVPKPVTSFEEASFPEYVLAE 127
Query: 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184
+ R GF PT +Q P L D++ + TGSGKTLAYLLP + + + G+G
Sbjct: 128 VIRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAYLLPAVVHIN-AQPYLQPGDG 186
Query: 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKP 244
+++AP+REL +QI +E ++ G S + + GGA + Q LR
Sbjct: 187 PI-------VLVLAPTRELAVQIQQECQRF-GSSSRIKNTVVYGGAPKGPQARDLRSGV- 237
Query: 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
IV+ TPGR+ ++ + + +LVLDE D +L F + +IV+ +
Sbjct: 238 EIVIATPGRLIDMMDSRVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI--------- 288
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSG 364
R +RQT++ SAT P V AR + +P V
Sbjct: 289 --------RPDRQTLLWSATWPKEVQAIARDFLKNPYQV--------------------- 319
Query: 365 PMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
+ GS L+A + + ++ Y +L+ +DT +D + ++ F R
Sbjct: 320 -IIGSP---ELKANHNIRQIVEMVEGYAKYPRLRKLLDT------EMDGRRILIFCETKR 369
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
+ V +L G A LHGD + R L++FKNG +++ +++ARGLDV + +
Sbjct: 370 GCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHPIMLATDVAARGLDVKDIKV 429
Query: 485 VVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
VVN D+P + Y HR GRTGR G GT S
Sbjct: 430 VVNYDMPKTAEDYVHRIGRTGRAGAHGTAYSF 461
>gi|421540667|ref|ZP_15986811.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
gi|421555017|ref|ZP_16000956.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
gi|402318562|gb|EJU54081.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
gi|402332170|gb|EJU67501.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
Length = 457
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + +H + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/444 (29%), Positives = 203/444 (45%), Gaps = 65/444 (14%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A SF +LG+ L + +R G+ PT +Q +IP L+ D++ + TGSGKT A+ LP
Sbjct: 60 APKSFRDLGIVDSLCDACDRLGYKRPTPIQEQSIPLALQGRDIIGIAETGSGKTAAFALP 119
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL L DK + A+++AP+REL QI + + L G ++
Sbjct: 120 ILQ---ALLDKPQP----------LFALVLAPTRELAAQITQAFEAL-GSLISLRCALIL 165
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + +Q AL K KP +VV TPGR+ + + ++LV+DE D LL +F
Sbjct: 166 GGLDMVQQAIALGK-KPHVVVATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGP 224
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I++ + R ER+T + SAT+ V R+ DPL V
Sbjct: 225 ILEKILKFLPR-----------------ERRTFLFSATMSSKVESLQRASLRDPLKV--- 264
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
S SSS Q++ +++Y + + HK L
Sbjct: 265 --------------------SISSSKY--------QTVATLVQNYLFIPHM-HKDTYLIY 295
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ QT+I F + + L GM A LHG L + AR L KF+ G +
Sbjct: 296 LCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRNI 355
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLD+ D V+N DLP DS Y HR GRT R G+ G +SI + ++ +
Sbjct: 356 LVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDIEIWL 415
Query: 527 KMQKQLAVPIQACEFTEGRLVIGK 550
+++ L + + +++ K
Sbjct: 416 RIEAALGTKLTEYALEKDEVMVFK 439
>gi|356504849|ref|XP_003521207.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine
max]
Length = 439
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 199/418 (47%), Gaps = 74/418 (17%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL L+E E+ G+ P ++Q+ AIP L+ DV+ + TGSGKT A+ LPIL
Sbjct: 10 TFKDLGLSESLVEACEKLGWKNPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAFALPILH 69
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ E+ + D A +++P+REL +QI + + LG LVGG
Sbjct: 70 AL-----------LEAPRPKDFFACVLSPTRELAIQIAEQFEA-LGSEIGVKCAVLVGGI 117
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG-----CRFLVLDEIDELLSFNFR 285
+ +Q + K +P I+VGTPGR+ + HT G ++LVLDE D LL+ +F
Sbjct: 118 DMVQQSIKIAK-QPHIIVGTPGRVIDHLK----HTKGFSLSRLKYLVLDEADRLLNEDFE 172
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
E+++ I++ + R ER+T + SAT+ V + R +P+ ++A
Sbjct: 173 ESLNEILQMIPR-----------------ERRTFLFSATMTKKVQKLQRVCLRNPVKIEA 215
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQA-KQADQSLPPALKHYYCVTKLQHKVDTL 404
SS S + KQ + LP K Y V L
Sbjct: 216 -----------------------SSKYSTVDTLKQQYRFLPAKHKDCYLVYILTE----- 247
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+ T + F + L G+KA ++G + + R L KFK+GE
Sbjct: 248 ------MAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGEC 301
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+L+ ++++RGLD+ D+V+N D+PT+S Y HR GRT R GR G +S+ + E+
Sbjct: 302 NILLCTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEL 359
>gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
lyrata]
gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
lyrata]
Length = 501
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 197/420 (46%), Gaps = 62/420 (14%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E + P SF ++G P +LE +++ GF PT +QS P +K D++ + TGS
Sbjct: 88 TVEGKDIPKPVKSFRDVGFPDYVLEEIKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGS 147
Query: 159 GKTLAYLLPILSKVG--PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216
GKT++YLLP + V P+ + G+G +++AP+REL +QI +E K G
Sbjct: 148 GKTISYLLPAIVHVNAQPI---LAPGDGPI-------VLVLAPTRELAVQIQQEASKF-G 196
Query: 217 PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276
S K + GG + Q L+K IV+ TPGR+ ++ + + +LVLDE
Sbjct: 197 SSSKIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMMESNNTNLRRVTYLVLDEA 255
Query: 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336
D +L F + +IV H+ R +RQT+ SAT P V + ++ +
Sbjct: 256 DRMLDMGFDPQIRKIVSHI-----------------RPDRQTLYWSATWPKEVEQLSKKF 298
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
++P V + GSS +L+A +A + + + K
Sbjct: 299 LYNPYKV----------------------IIGSS---DLKANRAIRQIVDVISESQKYNK 333
Query: 397 LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
L ++ + +D ++ F++ + +L G A +HGD + R L
Sbjct: 334 LVKLLEDI------MDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVL 387
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+F++G+ ++ +++ARGLDV + V+N D P Y HR GRTGR G +GT +
Sbjct: 388 SEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 447
>gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays]
Length = 455
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/465 (27%), Positives = 220/465 (47%), Gaps = 65/465 (13%)
Query: 88 SDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN 147
++G A V + E E A A++F ELG+ L+E + G+ PT +Q+ AIP L+
Sbjct: 2 ANGDAAVEVGGNGEQEXAARQASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQG 61
Query: 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207
D++ + TGSGKT A+ LPIL ++ SN E A +++P+REL +QI
Sbjct: 62 KDLIALAQTGSGKTGAFALPILQEL------LSNRQAEQS----FFACVLSPTRELAIQI 111
Query: 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTH 266
+ + L G + LVGG +R +Q ++ K +P IVVGTPGR+ + ++
Sbjct: 112 AEQFEAL-GSAIGLRCSVLVGGVDRVQQVLSIGK-RPHIVVGTPGRLLDHLTETKGFSLK 169
Query: 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326
++LVLDE D+LL+ F +++ I+ + PK +R+T + SAT+
Sbjct: 170 KIKYLVLDEADKLLNVEFEKSLDDILSEM----------PK-------DRRTFLFSATMT 212
Query: 327 FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQA-KQADQSLP 385
V + R+ +P V+ SS S + + KQ +P
Sbjct: 213 KKVNKLQRACLRNPAKVEV-----------------------SSKYSTVDSLKQEFYFVP 249
Query: 386 PALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHG 445
K Y + L +++++ ++ F+ + L G+KA + G
Sbjct: 250 ADDKDCYLLHVLNERLESM-----------IMIFVRTCESTRLLALMLRNLGLKAMSISG 298
Query: 446 DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505
+ + R L +FK + +L+ ++++RGLD+ D+V+N D+P +S Y HR GRT
Sbjct: 299 QMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQGVDMVINYDIPINSKDYVHRVGRTA 358
Query: 506 RLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGK 550
R GR G VS+ + E +++ L I C+ ++I K
Sbjct: 359 RAGRSGYAVSLVNQYEAQWFVLIEQLLGKKIDQCKVDRDEVLILK 403
>gi|331682838|ref|ZP_08383457.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
gi|432616406|ref|ZP_19852528.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE75]
gi|450188239|ref|ZP_21890142.1| ATP-dependent RNA helicase DbpA [Escherichia coli SEPT362]
gi|331080469|gb|EGI51648.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
gi|431155306|gb|ELE56063.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE75]
gi|449322962|gb|EMD12938.1| ATP-dependent RNA helicase DbpA [Escherichia coli SEPT362]
Length = 457
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPTILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRMLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
Length = 451
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 215/452 (47%), Gaps = 67/452 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+SF L L +++ L GF T +Q + IP LK DV+ Q+ TG+GKT A+ +P++
Sbjct: 2 SSFENLKLSEPVMKALASMGFEESTHIQDSTIPLALKGKDVIGQAPTGTGKTAAFGIPMI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ D S + I+A+++ P+REL +Q+ E+ K+ +A+ + GG
Sbjct: 62 E----ICDNSPS----------IQAIVITPTRELAIQVSEELNKIGQFKGIRAL-PIYGG 106
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
Q + L K KP I+V TPGR+ + ++ + + + LVLDE DE+L F + +
Sbjct: 107 QEYKWQMKGL-KEKPQIIVATPGRLMDHLTKQKSIKGNDVKMLVLDEADEMLDMGFIDDI 165
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+ ++E + AERQT++ SAT+ + + A P +V
Sbjct: 166 YAVMEK-----------------LPAERQTLLFSATMSPEIKKIAVELMKKPHIV----- 203
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+++ + PA+ +Y K + L R +
Sbjct: 204 ----------------------------GQESKKVKSPAISQHYVEVHESGKFEALCRIL 235
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
I F+ ++ + L RG A LHGD+ + R++ +K+FKNG+ +VLV
Sbjct: 236 DTQCPDLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNGKTQVLV 295
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+++ V N D+P D Y HR GRTGR G+ G ++ E+ ++K +
Sbjct: 296 ATDVAARGLDISDVSHVFNFDIPRDPESYVHRIGRTGRAGKSGISITFVTFREIKLLKLI 355
Query: 529 QKQLAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
++ A ++ E I +++ K ++++R
Sbjct: 356 EQVSARRMERMEVPTLEEAIEEQQRKVIDSLR 387
>gi|390168903|ref|ZP_10220852.1| DEAD/DEAH box helicase [Sphingobium indicum B90A]
gi|389588492|gb|EIM66538.1| DEAD/DEAH box helicase [Sphingobium indicum B90A]
Length = 445
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 201/430 (46%), Gaps = 62/430 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL LL+ + G++ PT +Q+ AIP +L D++ + TG+GKT +++LP++
Sbjct: 2 TFADLGLSDELLKAVSEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI- 60
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
D ++G + ++I+ P+REL Q+ +K G K + L+GG
Sbjct: 61 ------DILAHGRARALMP---RSLILEPTRELAAQVAENFEKY-GKYHKLNMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL K +++ TPGR+ ++ GK+ +GC LV+DE D +L F +
Sbjct: 111 QMGDQLKALEKGVD-VLIATPGRLMDLFQRGKILLNGCSMLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + A+RQT++ SAT+P + + A + +P ++
Sbjct: 170 ICTK-----------------LPAQRQTLLFSATMPAPIKKLADRFLSNPKSIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT N++ + S + K + LR + A
Sbjct: 208 --ARPATASTNITQRLVKVDS--------------------------RKKREALRAMLEA 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + + F N +++ L+ G ++ E+HGD+ + AR L++F+ G V +LV +
Sbjct: 240 EDVLSAVIFCNRKTTVRELNKSLQRHGFRSGEIHGDIDQSARIAELERFRAGTVNILVAS 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ V N D P Y HR GRTGR G +G + + + +QK
Sbjct: 300 DVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTADDAEAIDNIQK 359
Query: 531 QLAVPIQACE 540
+ I+ +
Sbjct: 360 LIKQKIETID 369
>gi|294791601|ref|ZP_06756749.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
gi|294456831|gb|EFG25193.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
Length = 432
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/425 (27%), Positives = 202/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L++ L+++G PT +Q +IP + K +DV+ ++ TG+GKTLA+LLP+L
Sbjct: 3 SFKSLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPVLQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+V TD+ + +I+AP+REL QI E K++ G + L+
Sbjct: 63 RV----------------HTDVHQEQVLIIAPTRELIKQISDEAKEI-GSILNVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIEAQLQQLGR-RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IENLIGQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+S P+S ++ ++ + DQ + Y + + K L +
Sbjct: 197 --------------MSKPVSVTAEGKHITLESIDQRV-------YMMNP-EEKTQRLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IEDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|218704863|ref|YP_002412382.1| ATP-dependent RNA helicase DbpA [Escherichia coli UMN026]
gi|293404872|ref|ZP_06648864.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
gi|298380516|ref|ZP_06990115.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
gi|300900110|ref|ZP_07118304.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
gi|331672872|ref|ZP_08373658.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
gi|417586267|ref|ZP_12237040.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_C165-02]
gi|419936716|ref|ZP_14453699.1| ATP-dependent RNA helicase DbpA [Escherichia coli 576-1]
gi|432353269|ref|ZP_19596545.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE2]
gi|432401619|ref|ZP_19644372.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE26]
gi|432425786|ref|ZP_19668294.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE181]
gi|432460462|ref|ZP_19702614.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE204]
gi|432475480|ref|ZP_19717485.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE208]
gi|432489020|ref|ZP_19730902.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE213]
gi|432517419|ref|ZP_19754614.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE228]
gi|432537518|ref|ZP_19774424.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE235]
gi|432631092|ref|ZP_19867022.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE80]
gi|432640737|ref|ZP_19876574.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE83]
gi|432665724|ref|ZP_19901307.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE116]
gi|432718379|ref|ZP_19953354.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE9]
gi|432774495|ref|ZP_20008779.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE54]
gi|432839036|ref|ZP_20072524.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE140]
gi|432886190|ref|ZP_20100385.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE158]
gi|432912272|ref|ZP_20118205.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE190]
gi|433018306|ref|ZP_20206560.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE105]
gi|433052705|ref|ZP_20239920.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE122]
gi|433067657|ref|ZP_20254467.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE128]
gi|433158326|ref|ZP_20343184.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE177]
gi|433177906|ref|ZP_20362337.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE82]
gi|433202907|ref|ZP_20386695.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE95]
gi|218431960|emb|CAR12845.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
UMN026]
gi|291427080|gb|EFF00107.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
gi|298277958|gb|EFI19472.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
gi|300356389|gb|EFJ72259.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
gi|331070093|gb|EGI41462.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
gi|345339423|gb|EGW71849.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_C165-02]
gi|388400405|gb|EIL61146.1| ATP-dependent RNA helicase DbpA [Escherichia coli 576-1]
gi|430876786|gb|ELC00293.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE2]
gi|430926449|gb|ELC47036.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE26]
gi|430957317|gb|ELC75971.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE181]
gi|430990004|gb|ELD06450.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE204]
gi|431007480|gb|ELD22292.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE208]
gi|431022128|gb|ELD35398.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE213]
gi|431052728|gb|ELD62376.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE228]
gi|431071078|gb|ELD79234.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE235]
gi|431171471|gb|ELE71646.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE80]
gi|431183002|gb|ELE82818.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE83]
gi|431202540|gb|ELF01226.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE116]
gi|431264849|gb|ELF56552.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE9]
gi|431319840|gb|ELG07510.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE54]
gi|431390455|gb|ELG74158.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE140]
gi|431417999|gb|ELH00427.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE158]
gi|431442332|gb|ELH23437.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE190]
gi|431534936|gb|ELI11325.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE105]
gi|431573580|gb|ELI46378.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE122]
gi|431587647|gb|ELI59002.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE128]
gi|431680346|gb|ELJ46203.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE177]
gi|431707101|gb|ELJ71657.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE82]
gi|431724230|gb|ELJ88170.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE95]
Length = 457
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L+ G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/434 (29%), Positives = 206/434 (47%), Gaps = 62/434 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL LL+ + +G+ P+ +Q AIP +L+ DV+ + TG+GKT + LP++
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIH 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ N + G++ I A+++ P+REL QI + + D K++ + GG
Sbjct: 62 RL--------INNPKQGRRK-IRALVLTPTRELAAQIQENVLEYSKYVDIKSM-VIFGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N++ Q LR+ I+V TPGR+ ++ G L FLVLDE D +L F + +
Sbjct: 112 NQNPQVRTLRQGVD-ILVATPGRLLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKK 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
+++ V P A+RQ ++ SAT + + A S +P+LV+A
Sbjct: 171 VLKMV-------P----------AKRQNLLFSATFNTDIKKFASSILTNPVLVEA----- 208
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ N A++ DQ Y V K K + L + +
Sbjct: 209 --------------------TPENTTAEKVDQ-------KSYRVDK-SRKTEMLIKFIRE 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ V+ F KLE G+ +A +HG+ + AR L FK+G+VRVLV
Sbjct: 241 GNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ V+N +LP Y HR GRTGR G G +S+ EV V+ ++K
Sbjct: 301 DIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRGIEK 360
Query: 531 QLAVPIQACEFTEG 544
L + + E EG
Sbjct: 361 LLGEKLHS-EVLEG 373
>gi|218548978|ref|YP_002382769.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ATCC 35469]
gi|218356519|emb|CAQ89142.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia
fergusonii ATCC 35469]
Length = 457
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP L L G+ T VQ+AA+P+IL D+ +Q+ TGSGKT A+ L +L +
Sbjct: 10 LPAAQLTNLNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DATLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLTIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP +H+Y T K+ L+R + +
Sbjct: 211 -------------------------DALPPVEQHFY-ETSSSGKISLLQRLLSVYQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG VR+LV +++ARG
Sbjct: 245 VVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G+ G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEE 349
>gi|119187445|ref|XP_001244329.1| hypothetical protein CIMG_03770 [Coccidioides immitis RS]
gi|118578050|sp|Q1E0Z3.1|DBP8_COCIM RecName: Full=ATP-dependent RNA helicase DBP8
gi|392871055|gb|EAS32917.2| ATP-dependent RNA helicase DBP8 [Coccidioides immitis RS]
Length = 536
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 211/456 (46%), Gaps = 76/456 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+SF LGL P L+ L PT +Q A IP ILK D + S TGSGKT+A+ PIL
Sbjct: 106 SSFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPIL 165
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ S I AV++ P+REL +QI + K + P K V L+ G
Sbjct: 166 HRW-------------SEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPV--LITG 210
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFNFR 285
+ R + +P +V+ TPGR+A+ I +G+ +G R +VLDE D LL+
Sbjct: 211 GSEMRPQAIALSTRPHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLLA---- 266
Query: 286 EAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
SG P SAL RQT++ +ATV V RA +S
Sbjct: 267 -------------SGPGSMLPDVETCLSALPPSTSRQTLLFTATVTQEV-RALKS----- 307
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+ + K+ +P+ ++ S+ +N ++PP LK Y + H+
Sbjct: 308 -MPRPKDRLPIF-------------VTEISTENN-------TTIPPTLKQCYLQVPMTHR 346
Query: 401 VDTLRRCVHALDAQT---VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLK 457
+ + + DA + I F N T+ L G + LH L + R++ L
Sbjct: 347 -EAFLHVLLSTDANSSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLA 405
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+F+ R+LV +++ARGLD+ LVVN D+P + Y HR GRT R GR G +++
Sbjct: 406 RFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLV 465
Query: 518 EEPEVFVVKKMQKQLAVPIQACE----FTEGRLVIG 549
+ +V +V +++++ + A E EGR+V G
Sbjct: 466 GQRDVQLVLAIEERVGRQMVAWEEEGVSIEGRIVRG 501
>gi|149372587|ref|ZP_01891699.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[unidentified eubacterium SCB49]
gi|149354630|gb|EDM43194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[unidentified eubacterium SCB49]
Length = 626
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 209/445 (46%), Gaps = 69/445 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPI 168
++F LGL LL+ + GF P+EVQ AIP +L+ + D+V + TG+GKT A+ P+
Sbjct: 2 SAFKALGLNDELLQAITDMGFETPSEVQEQAIPILLEEDTDLVALAQTGTGKTAAFGFPM 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L K+ + +++ G +I++P+REL MQI E+K V + G
Sbjct: 62 LQKI-DVASRTTQG------------LILSPTRELCMQITNEMKSYGKHMKGLNVVAIYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ S Q ++K I+V TPGR+ ++ + + + VLDE DE+L+ F E +
Sbjct: 109 GASISDQARQIKKG-AQIIVATPGRMKDMISRRMIDISKIEYCVLDEADEMLNMGFHEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAK 346
I+ H +P+ E+ T + SAT+P V A+ + + P + V +K
Sbjct: 168 TEILSH-------SPQ----------EKSTWLFSATMPREVASIAKEFMYQPQEITVGSK 210
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N TG N++ H Y + + + L+R
Sbjct: 211 N---------TGSENVT--------------------------HEYYLVNARDRYQALKR 235
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
A + F R + +L G A +HGDL + R +K+F++ ++++
Sbjct: 236 LADANPEIFSVVFCRTKRDTQKVAEQLIQDGYSAGAIHGDLSQNQRDIVMKQFRSRQIQM 295
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
+V +++ARG+DV V+N LP + Y HR+GRTGR G +G + I + EV ++
Sbjct: 296 MVATDVAARGIDVDNITHVINYQLPDEVETYTHRSGRTGRAGNQGISIVIVSKSEVRKIR 355
Query: 527 KMQKQLAVPIQACEFTEGRLVIGKE 551
++K++ + E G + K+
Sbjct: 356 SIEKKIQKKFEVKEVPSGMEICEKQ 380
>gi|424816385|ref|ZP_18241536.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ECD227]
gi|325497405|gb|EGC95264.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ECD227]
Length = 457
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP L L G+ T VQ+AA+P+IL D+ +Q+ TGSGKT A+ L +L +
Sbjct: 10 LPAAQLTNLNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DATLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLTIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP +H+Y T K+ L+R + +
Sbjct: 211 -------------------------DALPPVEQHFY-ETSSSGKISLLQRLLSVYQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG VR+LV +++ARG
Sbjct: 245 VVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G+ G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEE 349
>gi|359792245|ref|ZP_09295065.1| ATP-dependent RNA helicase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359251603|gb|EHK54941.1| ATP-dependent RNA helicase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 525
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 208/449 (46%), Gaps = 67/449 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F +LGL P +L + G+ VPT +Q AIP L+ DV+ + TG+GKT +++LP+
Sbjct: 11 ALTFADLGLSPKVLSAVTDAGYTVPTPIQLGAIPHALQGKDVLGIAQTGTGKTASFVLPM 70
Query: 169 LSKVGPLKDKSSNGNGESGKKTDI--EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
L+++ E G+ +I+ P+REL Q+ K G + K + L
Sbjct: 71 LTRL------------EKGRARARMPRTLILEPTRELAAQVEENFIKY-GKNHKLNIALL 117
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
+GG + QE+ L + +++ TPGR+ + GKL +G LV+DE D +L F
Sbjct: 118 IGGVSFDEQEKKLERGA-DVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIP 176
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI E + P + RQT+ SAT+P + + + H P+ V+
Sbjct: 177 DIERICEMI----------PFT-------RQTLFFSATMPPEITKLTEQFLHAPVRVEVS 219
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+SS++N+ + P K + + D L+
Sbjct: 220 RA--------------------ASSSTNITQRLVKSGPKPWDKRETLRNLINAEADGLK- 258
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
I F N ++ + L A LHGD+ + AR L F++G++++
Sbjct: 259 --------NAIIFCNRKVEVAELFRSLVKYDFDAGALHGDMDQRARMQMLSNFRDGKLKL 310
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV ++++ARGLD+ E V N D+P + Y HR GRTGR GR G +I + +V V
Sbjct: 311 LVASDVAARGLDIPEVSHVFNYDVPIHAEDYVHRIGRTGRAGRLGKAFTIVTKSDVKYVD 370
Query: 527 KMQKQLAVPIQACEFTEGRL--VIGKEEE 553
+++ + I E+ +G L V+ E E
Sbjct: 371 AIERLTGLKI---EWHDGDLSTVVASESE 396
>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
Length = 549
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/420 (28%), Positives = 192/420 (45%), Gaps = 61/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL +L+ + +G++ P+ +Q+ AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 TFKDLGLSAPILKAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G+ + + +I+ P+REL Q+ + G + + GG
Sbjct: 63 LLSA---------GKRAQPNQVRTLILTPTRELAAQVGESVA-TYGKHMSLSSAVVFGGV 112
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ ++V TPGR+ ++ + + LVLDE D +L F + R
Sbjct: 113 KINPQMMKLRRGV-DVLVATPGRLMDLYSQNAVKFTYLEVLVLDEADRMLDMGFIHDIKR 171
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + +R RQ +M SAT + + A+ H+P+ + +V P
Sbjct: 172 IISLLPKR-----------------RQNLMFSATFSDDIRKLAKGLVHNPIEI---SVTP 211
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
N A QS+ Y V K Q K L R +H
Sbjct: 212 ----------------------RNATAPTVTQSI-------YTVDKKQ-KAGVLTRLIHD 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F LEA G+ AA +HG+ + AR+ L FK GEVR+LV
Sbjct: 242 NKWGQALVFTKTKHGANKLTKHLEAEGIVAAAIHGNKSQGARTKALAGFKAGEVRILVAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ + VVN DLP + Y HR GRTGR G GT +S+ EV ++ +++
Sbjct: 302 DIAARGLDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGSTGTAISLVSADEVDLLSDIER 361
>gi|156089185|ref|XP_001611999.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
gi|154799253|gb|EDO08431.1| DEAD/DEAH box helicase domain containing protein [Babesia bovis]
Length = 649
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 140/506 (27%), Positives = 231/506 (45%), Gaps = 90/506 (17%)
Query: 57 SEFEPTNKNKSNKPKKHSP----------IEIPKAKVKAVRSD----GIKAAGVKKSL-- 100
SE+ +K +SNK S I+ P K +A SD + A + S
Sbjct: 55 SEYTDKSKKRSNKRGIESMDIEKDDADGVIQGPPMKTRANNSDKSTVSLDAQATESSTSK 114
Query: 101 -EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSG 159
E+ S + ++ +LGL L++ + G+ P+ +QS IP L+ D++ + TGSG
Sbjct: 115 QEVNSHLTSDTNWSDLGLSRSLIKAVFDMGYKAPSIIQSKVIPVALEGKDLLATAETGSG 174
Query: 160 KTLAYLLPILSKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216
K+ A+L+P L ++ G +K K + ++ +A+I+ P+REL Q L
Sbjct: 175 KSAAFLIPTLQRLITAGVIKQKDVDLTRGGNQRVGTKALILLPTRELAAQCYDVFLALTQ 234
Query: 217 PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK-LHTHGCRFLVLDE 275
+ V L+ G +++EA + P IV TPG++ +I +H +VLDE
Sbjct: 235 NLTQNGV--LITGGVPVKEQEAKLRRMPYIVFATPGKVLDIMLNSNCIHMDAIEIVVLDE 292
Query: 276 IDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT--------VPF 327
D LL F++ + I++ + ERQT++ SAT VP
Sbjct: 293 ADRLLDLGFKDELAHILQLCNK-----------------ERQTMLFSATLTEATKELVPV 335
Query: 328 SVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPA 387
+++ +P+ ++A I + + + N+Q K D A
Sbjct: 336 ALV--------NPIYIKATPKITV---------------AKTLKCENIQLKSDDLREAAA 372
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA-VFKLEARGMKAAELHGD 446
L Y C + K T++ F ++A VF+L G+K+ ELHGD
Sbjct: 373 L--YLCSQRYTKK--------------TILFFQTKRAAHRNALVFQLA--GLKSGELHGD 414
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGR 506
L + R ++KFKNGEV L+ +EL++RGLD+ V+N+ LP D++ + HR GRT R
Sbjct: 415 LAQAKRFEQIEKFKNGEVDFLMASELASRGLDIPGISAVINVHLPFDNVRFLHRVGRTAR 474
Query: 507 LGRRGTVVSICEEPEVFVVKKMQKQL 532
+G GT ++ E E +K M K +
Sbjct: 475 MGEEGTAITFYTEKERSAIKSMMKSI 500
>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
gi|143462290|sp|A1D405.1|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
Length = 472
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 202/442 (45%), Gaps = 65/442 (14%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A SF +LG+ L E E G+ PT +Q+ +IP L+ D++ + TGSGKT A+ LP
Sbjct: 50 APKSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALP 109
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL L +K + G +I+AP+REL QI + + L G + +V
Sbjct: 110 ILQ---ALMEKPQSFFG----------LILAPTRELAFQISKSFESL-GSTINVRCAVIV 155
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + Q AL K KP I+V TPGR+ + + ++LV+DE D LL +F
Sbjct: 156 GGMDMVSQSIALGK-KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGP 214
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I++ + R ER+T + SAT+ V R+
Sbjct: 215 LLDKILKVLPR-----------------ERRTFLFSATMSSKVESLQRA----------- 246
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+LS P+ S S++ Q L Y +HK L
Sbjct: 247 --------------SLSNPLRVSVSSNKYQTVST-------LLQSYLFLPHKHKDIYLVY 285
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
++ Q+ I F + + F L + G A LHG L + AR L KF++ +
Sbjct: 286 LLNEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDI 345
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLD+ D+V+N DLPTDS Y HR GRT R G+ G +S + +V +
Sbjct: 346 LVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWL 405
Query: 527 KMQKQLAVPIQACEFTEGRLVI 548
+++ L ++ E + +++
Sbjct: 406 RIEGALGKKLKEYELEKDEVMV 427
>gi|424659938|ref|ZP_18097186.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-16]
gi|408051247|gb|EKG86354.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-16]
Length = 459
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/424 (28%), Positives = 199/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI ++ + G + + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVR-IYGRHLPLSSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + A+RQ ++ SAT + A+
Sbjct: 172 LK-----------------LLPAKRQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK G++R+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGDIRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|240274195|gb|EER37713.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H143]
gi|325095426|gb|EGC48736.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H88]
Length = 487
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 195/392 (49%), Gaps = 51/392 (13%)
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
E F+ PT +QS P + DV+ + TGSGKTLA+ +P + KV + N + S
Sbjct: 88 EHFSKPTPIQSVTWPYLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEI-----NASHSSF 142
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ I AVI+ P+REL MQI ++ K + + + GGA++ Q AL+K +++
Sbjct: 143 R---ISAVIITPTRELAMQIYDQLVKFT--PNGVGLACIYGGASKDDQRRALKK--ASVI 195
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V TPGR+ + + L+ ++LVLDE D +L F + + I+
Sbjct: 196 VATPGRLKDFHSDESLNLKKVKYLVLDEADRMLDKGFEQDIKDIL--------------- 240
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
SA+ +RQT+M +AT P SV + A ++ +P+ V T G+LS
Sbjct: 241 SAMPSSRKRQTVMFTATWPISVRKLATTFMKEPITV-------------TIGGDLS---- 283
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
S +N + KQ + + P K ++L ++ +R +A+D V+ F ++
Sbjct: 284 -SDIRANTRIKQIVEVVKPENKE----SRLLSLLNQYQRGRNAMDK--VLVFCLYKKEAT 336
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
+ ++G K A +HGD+ + R +L FK G V VLV +++ARGLD+ LV+N
Sbjct: 337 RIERFIRSKGFKVAGIHGDMNQTERFNSLDAFKLGSVPVLVATDVAARGLDIPAVKLVLN 396
Query: 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ P Y HR GRTGR G G +++ E
Sbjct: 397 VTFPLTVEDYVHRIGRTGRAGSDGLAITMFTE 428
>gi|358638010|dbj|BAL25307.1| ATP-independent RNA helicase [Azoarcus sp. KH32C]
Length = 485
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 199/427 (46%), Gaps = 74/427 (17%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
AA SF EL L P L L++ + T +Q+A++P L HD++ Q+ TGSGKT A+ L
Sbjct: 26 AAPSFSELPLSPALQATLQQLEYRTMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALA 85
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+L+ + P ++ ++A+++ P+REL Q+ +EI++L +D + L
Sbjct: 86 LLTNLNP-------------RRFAVQAMVLCPTRELADQVTQEIRRLARAADNIKILALC 132
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q +L ++ IVVGTPGRI + G L LVLDE D +L F +
Sbjct: 133 GGTTMRPQRASL-EHGAHIVVGTPGRIMDHLDRGSLKLDALNTLVLDEADRMLDMGFYDD 191
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ + + R RQT++ SAT P + R A+ + +P +
Sbjct: 192 IAFVAQQCPTR-----------------RQTLLFSATYPEGIERLAQQFLRNP-----QE 229
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQAD---QSLPPALKHYYCVTKLQHKVDTL 404
V LE GS + D Q++ LKHY V+ L
Sbjct: 230 VKLLEQ------------HEGSKIRQRFYEIKHDERLQAVGTLLKHYRPVSTL------- 270
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
AF N +Q ++ L+A G A L+GDL + R L +F N
Sbjct: 271 -------------AFCNTKQQCRNLRDVLQAEGFHALTLNGDLEQRERDQVLIQFANRSC 317
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPE 521
VLV +++ARGLD+A+ + V+N+D+ D + HR GRTGR G +++C ++
Sbjct: 318 SVLVATDVAARGLDIAQLEAVINVDVTPDPEVHIHRIGRTGRADEDGWALTLCSPADKRR 377
Query: 522 VFVVKKM 528
V V+ +M
Sbjct: 378 VAVIGQM 384
>gi|409399600|ref|ZP_11249870.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
gi|409131219|gb|EKN00931.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
Length = 414
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 191/420 (45%), Gaps = 61/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F GL +L L GF PT +Q+ AIP L DV+ + TG+GKT A+ LP+++
Sbjct: 8 TFESFGLASPILGALTAAGFIKPTPIQAKAIPHALAGRDVLGIAQTGTGKTAAFALPMIN 67
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ D+ + K+ A+++AP+REL +QI +EIKK + V +VGG
Sbjct: 68 A---MTDRLHS------KRFSTRALVLAPTRELAVQIEQEIKKFAAGLGLRTV-LIVGGV 117
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+R Q + + + IVVG PGR+ ++ +L C+F VLDE D +L F + +
Sbjct: 118 SRFGQVQRMMRGAD-IVVGCPGRVVDLMNTRELVIDQCQFFVLDEADRMLDLGFMPDIRK 176
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
+V + A RQ+ + SAT+P + + A +P+ V+ + V
Sbjct: 177 VVN-----------------VLPARRQSALFSATMPAEIAKLANGLLREPVRVEIEAV-- 217
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S P ++ + K + L + +H
Sbjct: 218 -------------------------------ASTPSRIEQSVYFAEGPEKRNLLIKLLHQ 246
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F R L + + AA LHG+L + R L FK GEVR LV
Sbjct: 247 PEFSKTVVFTRTKRGADRVALMLNSSKISAAALHGNLSQNQRQRALDAFKAGEVRALVAT 306
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N +LP + Y HR GRT R G G V+ C+ E+ + +++K
Sbjct: 307 DIAARGIDVNAVSHVINFELPNEPESYVHRIGRTARNGADGVAVAFCDATELPYLTQIEK 366
>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 574
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 193/412 (46%), Gaps = 56/412 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A SF + G+ + + L G P +Q +P L D++ Q+ TG+GKTL + LP
Sbjct: 13 AKSFADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPT 72
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ +V D+ G +A+I+ P+REL +Q+ ++ + V L G
Sbjct: 73 IQRVVGRDDEGWADLEYPGAP---QALILVPTRELAIQVGEDLA-IAAKLRNARVATLYG 128
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q E LR+ +VVGTPGRI ++ G L+ + +VLDE DE+L F+ ++
Sbjct: 129 GVPIEPQAELLRRGL-EVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSV 187
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I+ ++ P+ +RQ+++ SAT+P VI AR + P+ + A +
Sbjct: 188 EKILSYL----------PE-------DRQSMLFSATMPGPVIAMARQYMTKPMRISAAD- 229
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH--KVDTLRR 406
P S + ++++ V + H K + + R
Sbjct: 230 ----------------PEDASKTKASIR---------------QVVYRAHHLDKDEMIGR 258
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R +L RG AA LHGDL ++AR LK F+ G+V +
Sbjct: 259 ILRATGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDI 318
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
LV +++ARG+DV + V+N +P D Y HR GRTGR G GT V++ +
Sbjct: 319 LVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVD 370
>gi|427702007|ref|YP_007045229.1| DNA/RNA helicase [Cyanobium gracile PCC 6307]
gi|427345175|gb|AFY27888.1| DNA/RNA helicase, superfamily II [Cyanobium gracile PCC 6307]
Length = 420
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/428 (27%), Positives = 200/428 (46%), Gaps = 61/428 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A F LGL +L+ + +G++ P+ +Q IP++L HDV+ + TG+GKT + LP+
Sbjct: 5 ATDFAVLGLSEPILKAVAAKGYSSPSPIQRQCIPAVLAGHDVMAAAQTGTGKTAGFTLPM 64
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ +G + + A+++ P+REL Q+ + D ++ + G
Sbjct: 65 LERLR---------HGPHARAGVVRALVLTPTRELAAQVADSVTAYGRYLDLRS-DVVFG 114
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + + Q + LR+ ++V TPGR+ ++ L LVLDE D +L F +
Sbjct: 115 GVSANPQMQRLRRGAD-VLVATPGRLMDLHQQNALRLDRVEILVLDEADRMLDMGFIRDI 173
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI+ + A+RQ ++ SAT + R A H P+ +QA
Sbjct: 174 RRILS-----------------LLPAKRQNLLFSATFSTEIRRLATGLLHTPVQLQAT-- 214
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
P N + P+ +Q + P C + K D L +
Sbjct: 215 ----------PENQAAPL-------------VEQVIHP------C--DMDRKGDLLSHLI 243
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D V+ F +LE G+ AA +HG+ + AR+ L +FK+GEVRVLV
Sbjct: 244 RTNDWGQVLVFSRTKHGANRLAERLEKEGLGAAAIHGNKSQGARTRALAEFKSGEVRVLV 303
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+D+ + VVNLDLP + Y HR GRTGR G+ G +S+ E +++ +
Sbjct: 304 ATDIAARGIDIHQLPHVVNLDLPNVAEDYVHRIGRTGRAGQNGHAISLVAAEEHELLRAI 363
Query: 529 QKQLAVPI 536
++ + P+
Sbjct: 364 ERLVGSPL 371
>gi|422805471|ref|ZP_16853903.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
gi|324113196|gb|EGC07171.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
Length = 463
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP L L G+ T VQ+AA+P+IL D+ +Q+ TGSGKT A+ L +L +
Sbjct: 16 LPAAQLTNLNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHI---- 71
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 72 ---------DATLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQR 122
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 123 DSL-QHAPHIIVATPGRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFA- 180
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 181 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLTIEIDST-------- 216
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP +H+Y T K+ L+R + +
Sbjct: 217 -------------------------DALPPVEQHFY-ETSSSGKISLLQRLLSVYQPSSC 250
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG VR+LV +++ARG
Sbjct: 251 VVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARG 310
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G+ G +S C E
Sbjct: 311 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEE 355
>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase [Agrobacterium radiobacter K84]
gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
Length = 556
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 206/426 (48%), Gaps = 59/426 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
F LGL +++ L + F PT +Q+ AIP +L+ D++ + TG+GKT A+ LPI+
Sbjct: 19 DFHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIE 78
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ LKD N + +I+AP+REL QI +K + + + + +VGGA
Sbjct: 79 ML--LKDAKRPDN------RTVRTLILAPTRELVNQIADNLKLFVRKTALR-INVVVGGA 129
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ ++Q+ L + I+V TPGR+ ++ + L +LVLDE D++L F + +
Sbjct: 130 SINKQQLQLERGT-DILVATPGRLLDLISRRALSLGQVSYLVLDEADQMLDLGFIHDLRK 188
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V A+RQT++ SAT+P ++ A + +P+ V+ V P
Sbjct: 189 ISKMVP-----------------AKRQTMLFSATMPKTIADLAAEYLTNPVKVE---VSP 228
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
PG K AD+ ++ + V+ HK + L+ + A
Sbjct: 229 --------PG-----------------KAADK----VEQYVHFVSGQNHKTEILKESISA 259
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F+ + + LE G AA +HG+ + R LK F++GEVRVLV
Sbjct: 260 NPDGRAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVLVAT 319
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ V N DLP Y HR GRT R GR G ++ C E +++ +++
Sbjct: 320 DVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRDIER 379
Query: 531 QLAVPI 536
+ + I
Sbjct: 380 LMGIEI 385
>gi|331646674|ref|ZP_08347777.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
gi|417661989|ref|ZP_12311570.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
gi|432894141|ref|ZP_20106102.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE165]
gi|330911207|gb|EGH39717.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
gi|331045426|gb|EGI17553.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
gi|431423483|gb|ELH05610.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE165]
Length = 457
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|294793457|ref|ZP_06758594.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
gi|294455027|gb|EFG23399.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
Length = 432
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 201/425 (47%), Gaps = 71/425 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LG+ L+ L+++G PT +Q +IP + K +DV+ ++ TG+GKTLA+LLPIL
Sbjct: 3 SFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQ 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+V TD+ + +I+AP+REL QI E K+L G + L+
Sbjct: 63 RV----------------HTDVHQEQVLIIAPTRELIKQISDEAKEL-GSILNVDILPLI 105
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG Q + L + +P +++GTPGR+ + + G LH R +VLDE D++L F
Sbjct: 106 GGKTIEAQLQQLGR-RPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPD 164
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++ A RQ ++ SAT+P + A+++
Sbjct: 165 IENLIGQTD-----------------ANRQLLLFSATIPDKIRNLAKAY----------- 196
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+S P+S ++ ++ + DQ + Y + + K L +
Sbjct: 197 --------------MSKPISVTAEGKHITLESIDQRV-------YMMNP-EEKTQRLIKM 234
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + I F N ++L A G+ AE+HGDL + R+ L+ F + ++L
Sbjct: 235 IEDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ V N D+P D +Y HR GRTGR G G V+ + +++
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRR 354
Query: 528 MQKQL 532
+++ +
Sbjct: 355 IERAI 359
>gi|302812625|ref|XP_002987999.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
gi|300144105|gb|EFJ10791.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
Length = 505
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 196/449 (43%), Gaps = 64/449 (14%)
Query: 74 SPIE----IPKAKVKAVRSDGIKAAGVKKSLEIE--SAPFAANSFLELGLPPLLLERLER 127
SP E I V A+ D + +K + ++ + P SF E P +L+ + +
Sbjct: 43 SPFEKNFYIEHPSVAALTDDEVVDFRRRKDITVQGRNVPKPVRSFAEASFPDYVLQEVLK 102
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
GF PT +Q+ P LK D+V + TGSGKTLAYLLP + V + + G+G
Sbjct: 103 AGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIVHVN-AQPYLAPGDGPI- 160
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++AP+REL +QI +E K G S K + GGA + Q L++ IV
Sbjct: 161 ------VLVLAPTRELAVQIQQESAKF-GSSSKIKSTCIYGGAPKGPQIRDLQRGV-EIV 212
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
+ TPGR+ ++ + +LVLDE D +L F + +IV +
Sbjct: 213 IATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQI------------ 260
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
R +RQT+ SAT P V + A + HDP V
Sbjct: 261 -----RPDRQTLYWSATWPKDVEQLANQFLHDPYKVTI---------------------- 293
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
GSSS L+A + + Y KL +D +D ++ FM R
Sbjct: 294 GSSS---LKANHSIAQHVEVVNDYEKYQKLIKLLDEF------MDGGKILIFMETKRGCD 344
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
+L G A +HGD + R L +FK G+ ++ +++ARGLDV + V+N
Sbjct: 345 QVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIMTATDVAARGLDVKDIRYVIN 404
Query: 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
D P Y HR GRTGR G +GT +
Sbjct: 405 YDFPGSCEDYVHRIGRTGRAGAKGTAYTF 433
>gi|171677330|ref|XP_001903616.1| hypothetical protein [Podospora anserina S mat+]
gi|170936733|emb|CAP61391.1| unnamed protein product [Podospora anserina S mat+]
Length = 652
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 215/451 (47%), Gaps = 58/451 (12%)
Query: 83 VKAVRSDGIKAAGVKKSLEIESAPFAANSFLE--LGLPPL----LLERLEREGFNVPTEV 136
+ + D IKA K+ +++E +NS L+ L L L+ + +N PT +
Sbjct: 189 IASASDDEIKAYLTKEEIKVEDP---SNSPLQPILKFTQLPTSKLIAKKPFAAYNAPTPI 245
Query: 137 QSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVI 196
Q+A+ P L D + + TGSGKT+A+ LP + K+ K+S + + T AVI
Sbjct: 246 QAASWPFTLAGRDAIGIAETGSGKTMAFALPCVEKLSIHSKKAS----KDYRSTRPRAVI 301
Query: 197 VAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVVGTPGRIA 255
VAP+REL MQ + L AV + GGA++ Q LRKN A I+ TPGR+
Sbjct: 302 VAPTRELAMQTHEAVSGLASQVGLTAVC-IYGGASKDDQRALLRKNSGADIITATPGRLK 360
Query: 256 EISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAE 315
+ + ++ F VLDE D +L F + + I+ G P+E E
Sbjct: 361 DFLSDNTVNLGDVMFAVLDEADRMLDKGFEDDIKLIL------GGCPPKE---------E 405
Query: 316 RQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNL 375
RQT+M +AT P SV A S+ +P+ V N A GN SG + +NS +
Sbjct: 406 RQTLMFTATWPTSVRVLAESFMVNPVKVTIGN-----RTRAGEDGNSSGTVE-LQANSRI 459
Query: 376 QAK-------QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428
+ K +Q L L+ + ++ L C++ +A V F
Sbjct: 460 EQKVEVVDPRGKEQRLLELLREAQKGSAKNDRI--LVFCLYKKEAVRVEQF--------- 508
Query: 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488
LE RG++ A +HGDL + R+ +L+ FK G VLV +++ARGLD+ E LV+N+
Sbjct: 509 ----LERRGIRVASIHGDLRQDQRTKSLEAFKAGTTSVLVATDVAARGLDIPEVKLVINV 564
Query: 489 DLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
P Y HR GRTGR G+ G +++ E
Sbjct: 565 TFPLTIEDYVHRIGRTGRAGKTGKAITLFTE 595
>gi|375011758|ref|YP_004988746.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359347682|gb|AEV32101.1| DNA/RNA helicase, superfamily II [Owenweeksia hongkongensis DSM
17368]
Length = 422
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 199/428 (46%), Gaps = 63/428 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L + +++ L+ E + PT +Q+ +IP +L +D++ + TG+GKT A+ +PIL
Sbjct: 3 FEDLNIIEPIIKALKEENYEQPTPIQAKSIPLLLDRNDMLASAQTGTGKTAAFAIPILQH 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ N ES + + A+I+ P+REL +QI E G + GG N
Sbjct: 63 L-------FNDRKESNHQHRVNALILTPTRELAIQI-GESFTTYGKHTGLRNTVIFGGVN 114
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +ALRK ++V TPGR+ ++ G ++ ++ VLDE D +L F + ++
Sbjct: 115 QRSQVDALRKGMD-VLVATPGRLLDLMDQGYVNLKDIKYFVLDEADRMLDMGFIHDIRKV 173
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + A+RQ++ SAT+P KN++ L
Sbjct: 174 IA-----------------KLPAKRQSLFFSATMP-------------------KNIVEL 197
Query: 352 ESMPATGPGNLS-GPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
T P + P+S ++ ++ Y T K D L +
Sbjct: 198 SRKILTNPKKVEVSPVSSTAE---------------TIQQYLYYTNKDLKKDLLFHILKD 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
V+ F V LE + +K+A +HG+ + R L +FK+ ++RVLV
Sbjct: 243 QSMDQVLIFAKTKHGADRVVRNLEKQKIKSAAIHGNKSQNQRQKALNQFKDKQIRVLVAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + V+N D+P + Y HR GR+GR G G +S+CE E ++ ++K
Sbjct: 303 DIAARGIDIDKLQHVINYDIPNIAETYVHRIGRSGRAGEEGMAISMCEPEENAYIRDIEK 362
Query: 531 --QLAVPI 536
L +P+
Sbjct: 363 LINLKIPV 370
>gi|301025571|ref|ZP_07189094.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
gi|419918489|ref|ZP_14436689.1| ATP-dependent RNA helicase DbpA [Escherichia coli KD2]
gi|300395891|gb|EFJ79429.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
gi|388390917|gb|EIL52392.1| ATP-dependent RNA helicase DbpA [Escherichia coli KD2]
Length = 457
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L+ G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGLQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|302782315|ref|XP_002972931.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
gi|300159532|gb|EFJ26152.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
Length = 534
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 196/449 (43%), Gaps = 64/449 (14%)
Query: 74 SPIE----IPKAKVKAVRSDGIKAAGVKKSLEIE--SAPFAANSFLELGLPPLLLERLER 127
SP E I V A+ D + +K + ++ + P SF E P +L+ + +
Sbjct: 48 SPFEKNFYIEHPSVAALTDDEVVDFRRRKDITVQGRNVPKPVRSFAEASFPDYVLQEVLK 107
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
GF PT +Q+ P LK D+V + TGSGKTLAYLLP + V + + G+G
Sbjct: 108 AGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIVHVNA-QPYLAPGDGPI- 165
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++AP+REL +QI +E K G S K + GGA + Q L++ IV
Sbjct: 166 ------VLVLAPTRELAVQIQQESAKF-GSSSKIKSTCIYGGAPKGPQIRDLQRGV-EIV 217
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
+ TPGR+ ++ + +LVLDE D +L F + +IV +
Sbjct: 218 IATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQI------------ 265
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
R +RQT+ SAT P V + A + HDP V
Sbjct: 266 -----RPDRQTLYWSATWPKDVEQLANQFLHDPYKVTI---------------------- 298
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
GSSS L+A + + Y KL +D +D ++ FM R
Sbjct: 299 GSSS---LKANHSIAQHVEVVNDYEKYQKLIKLLDEF------MDGGKILIFMETKRGCD 349
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
+L G A +HGD + R L +FK G+ ++ +++ARGLDV + V+N
Sbjct: 350 QVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIMTATDVAARGLDVKDIRYVIN 409
Query: 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
D P Y HR GRTGR G +GT +
Sbjct: 410 YDFPGSCEDYVHRIGRTGRAGAKGTAYTF 438
>gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris BisA53]
gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
BisA53]
Length = 517
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 199/421 (47%), Gaps = 61/421 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP ++ DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFTHLGLSDKVLAAVAASGYTTPTPIQDQAIPHVMARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L +K + +I+ P+REL Q+ + K G K V L+GG
Sbjct: 62 ----LLEKG------RARARMPRTLILEPTRELAAQVKEQFDK-YGAGQKLNVALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ L + +++ TPGR+ + + G L G LV+DE D +L F + R
Sbjct: 111 SFGDQDIKLTRGV-DVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIER 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V P + RQT+ +AT+P + R ++ H+P+ ++
Sbjct: 170 ICKLV----------PFT-------RQTLFFTATMPTEIRRITEAFLHNPVKIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV-H 409
S PA S++ + Q++ A P K +TLR+ +
Sbjct: 208 --SKPA------------STAVTVTQSQVAAGREP------------HQKRETLRQLLRE 241
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A D Q I F N R++ L G LHGD+ + AR+ L+ F+ GE+ +LV
Sbjct: 242 ASDLQNAIIFCNRKREVALLAKSLLKHGFSVGALHGDMDQSARTAALEAFRKGELPLLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++ARGLD+ E V N D+P Y HR GRTGR GR GT V++ P+ V ++
Sbjct: 302 SDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTAVTLVAPPDGKSVAAIE 361
Query: 530 K 530
K
Sbjct: 362 K 362
>gi|432397248|ref|ZP_19640031.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE25]
gi|432406208|ref|ZP_19648926.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE28]
gi|432722872|ref|ZP_19957794.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE17]
gi|432727459|ref|ZP_19962340.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE18]
gi|432741146|ref|ZP_19975867.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE23]
gi|432990459|ref|ZP_20179125.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE217]
gi|433110622|ref|ZP_20296491.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE150]
gi|430916722|gb|ELC37782.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE25]
gi|430931487|gb|ELC51939.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE28]
gi|431266838|gb|ELF58373.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE17]
gi|431275247|gb|ELF66292.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE18]
gi|431285737|gb|ELF76573.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE23]
gi|431497334|gb|ELH76912.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE217]
gi|431629792|gb|ELI98151.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE150]
Length = 457
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|367033825|ref|XP_003666195.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
gi|347013467|gb|AEO60950.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
Length = 493
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 142/482 (29%), Positives = 215/482 (44%), Gaps = 80/482 (16%)
Query: 56 KSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLEL 115
KS+ EP K SN+P + + A V +G + VK +F +L
Sbjct: 26 KSKTEPIPK--SNEPSHDAGSDAESATVDNASREGNGKSVVK-------------TFRDL 70
Query: 116 GLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPL 175
G+ L + ER G+ PT +Q AIP L+N D++ + TGSGKT A+ LPIL L
Sbjct: 71 GIVDSLCDACERLGYKNPTPIQQEAIPLALQNRDIIGIAETGSGKTAAFALPILQ---AL 127
Query: 176 KDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQ 235
DK + A+++AP+REL QI + + L G ++GG + +Q
Sbjct: 128 LDKPQ----------PLFALVLAPTRELAAQIAQAFEAL-GSLISLRCALILGGLDMVQQ 176
Query: 236 EEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEH 294
AL K KP +VV TPGR+ + + +FLV+DE D LL +F + +I++
Sbjct: 177 AIALGK-KPHVVVATPGRLLDHLEKTKGFSLRNLKFLVMDEADRLLDMDFGPILEKILKF 235
Query: 295 VGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354
+ R ER+T + SAT+ V R+ DPL V
Sbjct: 236 LPR-----------------ERRTFLFSATMSSKVESLQRASLRDPLKV----------- 267
Query: 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414
S SSS Q++ +++Y + + HK L + Q
Sbjct: 268 ------------SISSSKY--------QTVSTLVQNYIFIPHM-HKDTYLIYLCNEFAGQ 306
Query: 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474
T+I F + + L GM A LHG L + AR L KF+ +LV +++A
Sbjct: 307 TIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAKSRDILVATDVAA 366
Query: 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534
RGLD+ D V+N DLP DS Y HR GRT R G+ G +S + ++ + +++ L
Sbjct: 367 RGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFVTQYDLEIWLRIEAALGT 426
Query: 535 PI 536
+
Sbjct: 427 KL 428
>gi|387829377|ref|YP_003349314.1| ATP-dependent RNA helicase [Escherichia coli SE15]
gi|432499820|ref|ZP_19741583.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE216]
gi|432694213|ref|ZP_19929422.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE162]
gi|432918678|ref|ZP_20123019.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE173]
gi|432926453|ref|ZP_20128234.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE175]
gi|432980867|ref|ZP_20169645.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE211]
gi|433096235|ref|ZP_20282442.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE139]
gi|433105499|ref|ZP_20291510.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE148]
gi|281178534|dbj|BAI54864.1| ATP-dependent RNA helicase [Escherichia coli SE15]
gi|431030518|gb|ELD43532.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE216]
gi|431235571|gb|ELF30822.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE162]
gi|431445810|gb|ELH26733.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE173]
gi|431447088|gb|ELH27831.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE175]
gi|431493762|gb|ELH73356.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE211]
gi|431618208|gb|ELI87186.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE139]
gi|431631673|gb|ELI99979.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE148]
Length = 457
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNGLGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N ++ + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKECQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|295671282|ref|XP_002796188.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284321|gb|EEH39887.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 543
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 144/473 (30%), Positives = 214/473 (45%), Gaps = 83/473 (17%)
Query: 96 VKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSY 155
VK +L ++ P +SF LGL P L+ L PT +Q A IP ILK D + S
Sbjct: 100 VKDALATKT-PSDGSSFATLGLAPWLVGSLSAMAIKRPTAIQKACIPEILKGRDCIGGSR 158
Query: 156 TGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL 215
TGSGKT+A+ PIL K S I AV++ P+REL +QI +IK +
Sbjct: 159 TGSGKTVAFAAPILQKW-------------SEDPLGIFAVVLTPTRELALQIFEQIKAIS 205
Query: 216 GPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFL 271
P K + L+ G R + +P +V+ TPGR+A+ I+++G+ G RF+
Sbjct: 206 APQSLKPI--LITGGTEMRPQAIALSQRPHVVIATPGRLADHINSSGRDTICGLNRARFV 263
Query: 272 VLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVP 326
VLDE D LL SG P SAL RQT++ +ATV
Sbjct: 264 VLDEADRLLE-----------------SGPGSMLPDLETCLSALPPSTARQTLLFTATVT 306
Query: 327 FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPP 386
V RA +S PA+ P P+ + ++ QA ++P
Sbjct: 307 PEV-RALKSMPR----------------PASKP-----PIFVTEISTENQA-----TIPR 339
Query: 387 ALKHYYCVTKLQHKVDTLRRCVHAL------DAQTVIAFMNNTRQLKDAVFKLEARGMKA 440
LK Y + L H+ L H L ++ I F N T+ L G +A
Sbjct: 340 TLKQSYLLVPLTHREAFL----HVLLSTEGNSSKAAIIFCNRTKTADLLERMLRRLGHRA 395
Query: 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
LH L + R+ L +F+ +LV +++ARGLD+ LV+N D+P + Y HR
Sbjct: 396 TSLHSLLPQSERTANLSRFRASAAPILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHR 455
Query: 501 AGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE----FTEGRLVIG 549
GRT R GR G V++ + +V +V ++ ++ ++ + EGR+V G
Sbjct: 456 VGRTARAGREGEAVTLVGQRDVQLVLAIEDRVGRKMEEWKEEGVSIEGRIVRG 508
>gi|225678019|gb|EEH16303.1| ATP-dependent RNA helicase dbp3 [Paracoccidioides brasiliensis
Pb03]
Length = 486
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 191/392 (48%), Gaps = 52/392 (13%)
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
E F+ PT +QS + P + DV+ + TGSGKTLA+ +P + KV + NG+ S
Sbjct: 88 ENFSKPTSIQSVSWPFLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEI-----NGSRSSS 142
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ I AVI+ P+REL QI ++ K + + + GGA++ Q AL+K ++V
Sbjct: 143 R---ISAVIITPTRELATQIYDQLIKF--TPNNVGIACIYGGASKDDQRRALKK--ASVV 195
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V T GR+ + L ++LVLDE D +L F + + IV GA P K
Sbjct: 196 VATTGRLKDFQGDESLRLDKVKYLVLDEADRMLDKGFEQDIKDIV-------GAMPSSKK 248
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
RQT+M +AT P SV + A ++ D + + G+LS
Sbjct: 249 --------RQTVMFTATWPISVRKLAATFMKDHVTITI--------------GDLS---- 282
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
S +N + KQ + L P K + ++ L +R +A+D V+ F ++
Sbjct: 283 -SDIRANTRIKQIVEVLKPEDKEHRLLSLLNQ----YQRGKNAMDK--VLVFCLYKKEAT 335
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
+ ++G K A +HGD+ + R +L FK+G V +LV +++ARGLD+ LV+N
Sbjct: 336 RIERFIRSKGFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLN 395
Query: 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ P Y HR GRTGR G G +++ E
Sbjct: 396 VTFPLTVEDYVHRIGRTGRAGADGLAITMFTE 427
>gi|421540618|ref|ZP_15986763.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
gi|402318772|gb|EJU54288.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
Length = 462
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 194/423 (45%), Gaps = 62/423 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++ P+REL Q+ + +VGGA+
Sbjct: 65 LTKRSEKPGKGP---------RALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGAS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P ++RQT++ SAT +V + AR DP +++ + V
Sbjct: 174 IVE-------ATP----------SDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DDQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QLA 533
+
Sbjct: 364 YIG 366
>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
gi|143462228|sp|A1CR32.1|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
Length = 473
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 134/465 (28%), Positives = 215/465 (46%), Gaps = 68/465 (14%)
Query: 88 SDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN 147
SD +A +S E + AP SF +LG+ L E G+ PT +Q+ +IP L++
Sbjct: 34 SDNAEAQDGPESSETKPAP---KSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQD 90
Query: 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207
D++ + TGSGKT A+ LPIL L DK + G +++AP+REL QI
Sbjct: 91 RDLIGLAETGSGKTAAFALPILQ---ALMDKPQSFFG----------LVLAPTRELAFQI 137
Query: 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTH 266
+ + L G + +VGG + Q AL K KP I+V TPGR+ + +
Sbjct: 138 SQSFEAL-GSTINVRCAVIVGGMDMVSQSIALGK-KPHIIVATPGRLLDHLENTKGFSLR 195
Query: 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326
++LV+DE D LL +F + +I++ + R ER+T + SAT+
Sbjct: 196 TLKYLVMDEADRLLDMDFGPLLDKILKILPR-----------------ERRTFLFSATMS 238
Query: 327 FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPP 386
V R+ +LS P+ S S++ Q ++
Sbjct: 239 SKVESLQRA-------------------------SLSNPLRVSVSSNKYQ------TVST 267
Query: 387 ALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
L+ Y + +HK L ++ Q+ I F + + F L A G A LHG
Sbjct: 268 LLQSYRFIPH-KHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQ 326
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGR 506
L + +R L KF++ +LV +++ARGLD+ D+V+N DLPTDS Y HR GRT R
Sbjct: 327 LSQSSRLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTAR 386
Query: 507 LGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKE 551
G+ G +S + +V + +++ L + + + +++ E
Sbjct: 387 AGKSGVAISFVTQYDVEIWLRIEGALGKKLDEYDLEKDEVMVLAE 431
>gi|340522166|gb|EGR52399.1| predicted protein [Trichoderma reesei QM6a]
Length = 482
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 202/444 (45%), Gaps = 65/444 (14%)
Query: 96 VKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSY 155
V + + AP +F ELG+ L E E + PT +Q+ AIP L+ DV+ +
Sbjct: 44 VASTADATEAPEEPKTFKELGIVDSLCEACESLNYKRPTAIQAKAIPVALQGRDVIGLAE 103
Query: 156 TGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL 215
TGSGKT A+ LPIL + K + +++AP+REL QI + + L
Sbjct: 104 TGSGKTAAFALPILQAL-------------LEKPQPLFGLVLAPTRELAAQIGQSFEAL- 149
Query: 216 GPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLD 274
G +VGG + Q AL K KP I+V TPGR+ + + ++LV+D
Sbjct: 150 GALISLRCAVIVGGLDMVPQAIALGK-KPHIIVATPGRLVDHLEKTKGFSLRSLKYLVMD 208
Query: 275 EIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAAR 334
E D LL +F ++ +I++ + R ER+T + SAT+ V R
Sbjct: 209 EADRLLDMDFGPSIDKILKFIPR-----------------ERRTYLFSATLSSKVESLQR 251
Query: 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV 394
+ DP+ V S SSS Q++ L+HY V
Sbjct: 252 ASLRDPVRV-----------------------SVSSSKY--------QTVSTLLQHYILV 280
Query: 395 TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
+ K L V+ +++I F + + L G A LHG L + +R
Sbjct: 281 PH-KRKDTYLIYLVNEFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLG 339
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
L KFK G +LV +++ARGLD+ D+V+NLDLP DS Y HR GRT R G+ G +
Sbjct: 340 ALNKFKGGSREILVATDVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAI 399
Query: 515 SICEEPEVFVVKKMQKQLAVPIQA 538
+I + +V + ++++ L + A
Sbjct: 400 NIVTQYDVEIYQRIEAALGKKLDA 423
>gi|398379083|ref|ZP_10537228.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397723550|gb|EJK84044.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 580
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 206/426 (48%), Gaps = 59/426 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
F LGL +++ L + F PT +Q+ AIP +L+ D++ + TG+GKT A+ LPI+
Sbjct: 45 DFHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIE 104
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ LKD N + +I+AP+REL QI +K + + + + +VGGA
Sbjct: 105 ML--LKDAKRPDN------RTVRTLILAPTRELVNQIADNLKLFVRKTALR-INVVVGGA 155
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ ++Q+ L + I+V TPGR+ ++ + L +LVLDE D++L F + +
Sbjct: 156 SINKQQLQLERGT-DILVATPGRLLDLISRRALSLGQVSYLVLDEADQMLDLGFIHDLRK 214
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V A+RQT++ SAT+P ++ A + +P+ V+ V P
Sbjct: 215 ISKMVP-----------------AKRQTMLFSATMPKTIADLAAEYLTNPVKVE---VSP 254
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
PG K AD+ ++ + V+ HK + L+ + A
Sbjct: 255 --------PG-----------------KAADK----VEQYVHFVSGQNHKTEILKESISA 285
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F+ + + LE G AA +HG+ + R LK F++GEVRVLV
Sbjct: 286 NPDGRAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVLVAT 345
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ V N DLP Y HR GRT R GR G ++ C E +++ +++
Sbjct: 346 DVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRDIER 405
Query: 531 QLAVPI 536
+ + I
Sbjct: 406 LMGIEI 411
>gi|225560188|gb|EEH08470.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus G186AR]
Length = 539
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 190/438 (43%), Gaps = 70/438 (15%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P +SF LGL P L+ L PT +Q A IP ILK D + S TGSGKT+A+
Sbjct: 105 PSDISSFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFA 164
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
PIL K + I AVI+ P+REL +QI +IK + P K +
Sbjct: 165 APILQKW-------------AEDPFGIFAVILTPTRELALQIFEQIKAISAPQSLKPI-- 209
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLS 281
L+ G R + +P IV+ TPGR+A+ I+++G G R +V DE D LL+
Sbjct: 210 LITGGTEMRPQAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLA 269
Query: 282 FNFREAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVPFSVIRAARSW 336
SG P SAL RQT++ +ATV
Sbjct: 270 -----------------SGPGSMLPDVETCLSALPPSTARQTLLFTATV----------- 301
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
V L+SMP P N S N S+PP LK Y
Sbjct: 302 --------TPEVRALKSMPR--PANKLPIFVTEVSTEN------KASIPPTLKQTYLQVP 345
Query: 397 LQHKVDTLRRCV--HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
L H+ L + A + I F N T+ L G + LH L + R+
Sbjct: 346 LTHREAFLHTLISTEANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTA 405
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
L +F+ R+LV +++ARGLD+ LV+N D+P + Y HR GRT R GR G V
Sbjct: 406 NLSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAV 465
Query: 515 SICEEPEVFVVKKMQKQL 532
++ + +V +V ++ ++
Sbjct: 466 TLVGQRDVQLVLAIEDRV 483
>gi|91092124|ref|XP_972501.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
[Tribolium castaneum]
Length = 540
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 190/406 (46%), Gaps = 56/406 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F E G P ++ + + GF PT +QS P L D+V + TGSGKTL+Y+LP +
Sbjct: 92 TFEEAGFPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 151
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ + + G+G A+++AP+REL QI +++ G S K + GGA
Sbjct: 152 HIN-HQPRLLRGDGPI-------ALVLAPTRELAQQI-QQVATDFGRSSKIRNTCVFGGA 202
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q L + IV+ TPGR+ + + + + C +LVLDE D +L F + +
Sbjct: 203 PKGPQANDL-MDGVEIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRK 261
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+E + R +RQT+M SAT P V A + D + +
Sbjct: 262 IIEQI-----------------RPDRQTLMWSATWPKEVQALAAEFLKDYIQINV----- 299
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
G + S++++ LQ + + Y TKL TL + + A
Sbjct: 300 -------------GSLQLSANHNILQ-------IIDVCQEYEKETKLS----TLLKEIMA 335
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
I F+ +++ + K++ G A +HGD + R L+ F+ G+ +LV
Sbjct: 336 EKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGKAPILVAT 395
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+++ARGLDV + V+N D P++S Y HR GRTGR R GT +
Sbjct: 396 DVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTF 441
>gi|407693805|ref|YP_006818594.1| ATP-dependent RNA helicase SrmB [Actinobacillus suis H91-0380]
gi|407389862|gb|AFU20355.1| ATP-dependent RNA helicase SrmB [Actinobacillus suis H91-0380]
Length = 445
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 187/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY L+HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNLEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K+G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|417634149|ref|ZP_12284364.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_S1191]
gi|345388797|gb|EGX18606.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_S1191]
Length = 451
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP 175
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 176 -----------------ASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|157376984|ref|YP_001475584.1| ATP-dependent RNA helicase DbpA [Shewanella sediminis HAW-EB3]
gi|157319358|gb|ABV38456.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 458
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 192/422 (45%), Gaps = 64/422 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF L L P LL+ L+ G++ T +Q+ ++P+IL DV+ Q TGSGKT A+ L +L
Sbjct: 2 SFSTLTLKPELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLH 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ K+ I+++++ P+REL Q+ +EI+ L V L GG
Sbjct: 62 KLNV-------------KRFRIQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGV 108
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +L ++ I+VGTPGRI + + +L LVLDE D +L F +
Sbjct: 109 PMGPQIGSL-EHGAHIIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDY 167
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + R ERQT++ SAT P + + A ++P++V+
Sbjct: 168 IMAQMPR-----------------ERQTLLFSATFPKQIQKIAEEIMYEPVMVKV----- 205
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S + DQ H+Y + + + LR +
Sbjct: 206 ---------------------TSTHDSSSIDQ-------HFYQIDSNKDRQKALRLLLLQ 237
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + F N R+ KD L G LHGDL + R TL +F N ++V
Sbjct: 238 HRPESAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVAT 297
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ D+V+N + D+ + HR GRTGR G +G + + + +K +++
Sbjct: 298 DVAARGLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGAAFTFYTYDDDYKIKLLEE 357
Query: 531 QL 532
L
Sbjct: 358 YL 359
>gi|193066966|ref|ZP_03047935.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
gi|192959556|gb|EDV89990.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEAHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|3986285|dbj|BAA34993.1| DjVLGA [Dugesia japonica]
Length = 726
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 201/422 (47%), Gaps = 56/422 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SFLEL L P++ + + PT VQ A+P I++ D++ + TGSGKT A+L+P+LS
Sbjct: 212 SFLELKLHPIVSHNISLTQYTRPTPVQRYAVPIIMQRRDLMACAQTGSGKTAAFLIPLLS 271
Query: 171 KVGPLKDKSSNGNGESGKKTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV-- 227
+ +D N SG K + A+I+AP+REL +QI E +K S + V+ V
Sbjct: 272 MM--YQDGPGNSLSHSGYKKEYPVALILAPTRELAVQIYDEARKF---SYRSLVRPCVVY 326
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + Q + + + ++V TPGR++++ K+ R+LVLDE D +L F
Sbjct: 327 GGRDIRGQLQDISQG-CNMLVATPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQ 385
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ +IVE ++ + +RQT+M SAT P + A + D L ++
Sbjct: 386 IRKIVE-------------QTNMPPPGQRQTLMFSATFPREIQMLASDFLKDYLFLRV-- 430
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
G + +S N + D++ K H +D L
Sbjct: 431 ----------------GKVGSTSQNITQRIVYVDEN-----------EKRDHLLDILT-- 461
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+D+ ++I T++ DA+ L G A +HGD + R L+ F+ G +
Sbjct: 462 --DIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELALQSFREGSTPI 519
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV ++ARGLD+ V+N DLPTD Y HR GRTGR+G G +S + V K
Sbjct: 520 LVATRVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGEAISFYTDKNNNVAK 579
Query: 527 KM 528
++
Sbjct: 580 EL 581
>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 546
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 197/423 (46%), Gaps = 56/423 (13%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +F + GL P +L+ + G+ PT +Q+ AIP ++ HDV+ + TG+GKT + LP
Sbjct: 16 ATVTFSDFGLHPDVLKAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTAGFALP 75
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
I++ + P S + S + + A+I+AP+REL QI +K + + ++ +
Sbjct: 76 IINVLMP-----SASHSASPARHPVRALIIAPTRELADQIHDNVKTYIQFTPLRSAA-VF 129
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + Q ALR I++ TPGR+ + ++ + LVLDE D +L F
Sbjct: 130 GGVDMQPQTNALRAGV-EILIATPGRLLDHVQQKSVNLSQVQLLVLDEADRMLDMGFLPD 188
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ RI+ + NPR RQ +M SAT + + A+ + ++P L++
Sbjct: 189 IQRIINLL------NPR-----------RQNLMFSATFSDEIRKLAKRFLNEPKLIEV-- 229
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ N A+ +Q++ Y V K D +
Sbjct: 230 -----------------------ARPNTLAENVEQTV-------YHVPSEDLKRDAVGAL 259
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + VI F N L+ G A +HGD + R TL FK GE++VL
Sbjct: 260 IRERGIEQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFKAGEIKVL 319
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+AE V+N DLP Y HR GRTGR G G +S+ + + + +
Sbjct: 320 VATDVAARGLDIAELPAVINYDLPHSPEDYVHRIGRTGRAGASGMALSLMVDHDQKALAE 379
Query: 528 MQK 530
++K
Sbjct: 380 IEK 382
>gi|209918588|ref|YP_002292672.1| ATP-dependent RNA helicase DbpA [Escherichia coli SE11]
gi|218553903|ref|YP_002386816.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI1]
gi|293433706|ref|ZP_06662134.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
gi|416344633|ref|ZP_11678488.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
gi|417150595|ref|ZP_11990334.1| ATP-independent RNA helicase DbpA [Escherichia coli 1.2264]
gi|417154540|ref|ZP_11992669.1| ATP-independent RNA helicase DbpA [Escherichia coli 96.0497]
gi|417580763|ref|ZP_12231570.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_B2F1]
gi|417607827|ref|ZP_12258336.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_DG131-3]
gi|417666612|ref|ZP_12316167.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_O31]
gi|422774773|ref|ZP_16828429.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|432480751|ref|ZP_19722710.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE210]
gi|432808961|ref|ZP_20042866.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE101]
gi|432831316|ref|ZP_20064896.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE135]
gi|209911847|dbj|BAG76921.1| ATP-dependent RNA helicase [Escherichia coli SE11]
gi|218360671|emb|CAQ98232.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
IAI1]
gi|291324525|gb|EFE63947.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
gi|320199384|gb|EFW73975.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
gi|323947687|gb|EGB43690.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|345340120|gb|EGW72540.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_B2F1]
gi|345360206|gb|EGW92376.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_DG131-3]
gi|386160089|gb|EIH21900.1| ATP-independent RNA helicase DbpA [Escherichia coli 1.2264]
gi|386167629|gb|EIH34145.1| ATP-independent RNA helicase DbpA [Escherichia coli 96.0497]
gi|397786076|gb|EJK96919.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_O31]
gi|431008625|gb|ELD23425.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE210]
gi|431363852|gb|ELG50398.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE101]
gi|431378011|gb|ELG63003.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE135]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 200/431 (46%), Gaps = 57/431 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + GL P +L L +G+ PT +Q+ AIP +L+ DV+ + TG+GKT + LPI+
Sbjct: 30 FADFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 89
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + S+ S + + A+I+ P+REL Q+ +K + ++ + GG +
Sbjct: 90 LLAHANTSA-----SPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTV-VFGGVD 143
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q ALR IV+ TPGR+ + L+ + LV+DE D +L F + RI
Sbjct: 144 IAPQTAALRSGI-EIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRI 202
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + PK ERQ +M SAT + + A ++ +P+ ++
Sbjct: 203 INLL----------PK-------ERQNLMFSATFSGEIKKLAATFLKNPVTIEV------ 239
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ SN A Q++ Y V + Q K + + +
Sbjct: 240 -------------------ARSNATADNVTQTM-------YHVNE-QTKAEAVSYIIRER 272
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + VI F N LE G+ A+ +HGD + R L+ FK GE+ VLV +
Sbjct: 273 NLKQVIVFSNTKIGASKLARHLENEGVNASAIHGDKTQNERMAALEAFKRGEIEVLVATD 332
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+AE V+N DLP ++ Y HR GRTGR G G +S+ + + ++ ++K
Sbjct: 333 VAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLYADKDERLLVDIEKM 392
Query: 532 LAVPIQACEFT 542
+ E T
Sbjct: 393 IKYKFVRAELT 403
>gi|191165035|ref|ZP_03026879.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
gi|309797091|ref|ZP_07691489.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
gi|417159284|ref|ZP_11996434.1| ATP-independent RNA helicase DbpA [Escherichia coli 99.0741]
gi|417596449|ref|ZP_12247102.1| ATP-independent RNA helicase dbpA [Escherichia coli 3030-1]
gi|419277623|ref|ZP_13819884.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10E]
gi|419375205|ref|ZP_13916241.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14B]
gi|419380413|ref|ZP_13921378.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14C]
gi|419385801|ref|ZP_13926686.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14D]
gi|419951604|ref|ZP_14467791.1| ATP-dependent RNA helicase DbpA [Escherichia coli CUMT8]
gi|432967462|ref|ZP_20156378.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE203]
gi|190904807|gb|EDV64512.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
gi|308119261|gb|EFO56523.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
gi|345357159|gb|EGW89358.1| ATP-independent RNA helicase dbpA [Escherichia coli 3030-1]
gi|378132792|gb|EHW94144.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10E]
gi|378222851|gb|EHX83086.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14B]
gi|378230532|gb|EHX90650.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14C]
gi|378233478|gb|EHX93565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC14D]
gi|386175299|gb|EIH47290.1| ATP-independent RNA helicase DbpA [Escherichia coli 99.0741]
gi|388414127|gb|EIL74095.1| ATP-dependent RNA helicase DbpA [Escherichia coli CUMT8]
gi|431473434|gb|ELH53268.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE203]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|374367571|ref|ZP_09625632.1| helicase [Cupriavidus basilensis OR16]
gi|373100874|gb|EHP41934.1| helicase [Cupriavidus basilensis OR16]
Length = 496
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 189/406 (46%), Gaps = 53/406 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F GL + L +G+ PT +Q AIP +L+ DV+ + TG+GKT + LPI+
Sbjct: 14 TFDSFGLDARIQRALSEQGYTKPTPIQEQAIPVVLQGKDVMGAAQTGTGKTAGFALPIIQ 73
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ PL S+ S + + A+++ P+REL Q+ + + +D ++ + GG
Sbjct: 74 RLLPLASASA-----SPARHPVRALMLTPTRELADQVYDNVARYARFTDLRST-VVFGGV 127
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ + Q EALR+ I+V TPGR+ + ++ + LVLDE D +L F + R
Sbjct: 128 DMNPQTEALRRGV-EILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQR 186
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + A+RQT++ SAT + R A S+ H P+ ++
Sbjct: 187 IIN-----------------LLPAQRQTLLFSATFSSEIKRLAASYLHQPVTIEV----- 224
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S+++N +Q + K V L+ +R
Sbjct: 225 -----------------ARSNSANENVRQTVFQVEDGHKQAAVVHLLK------KRAAEG 261
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
L Q ++ F+N+ LE G+ AA +HGD + R TL FK G + LV
Sbjct: 262 LSRQCIV-FVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKQGNIDALVAT 320
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+++ARGLD+ + V+N DLP + Y HR GRTGR G G +SI
Sbjct: 321 DVAARGLDIPDMPCVINFDLPFSAEDYIHRIGRTGRAGASGDALSI 366
>gi|327554931|gb|AEB00819.1| vasa-like protein [Marsupenaeus japonicus]
Length = 698
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 196/428 (45%), Gaps = 57/428 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF + L PLLLE + + G+ PT VQ IP+++ D++ + TGSGKT A+LLP+L
Sbjct: 257 SFQAMDLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLH 316
Query: 171 KVGPLKDKS-SNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ L + S+ E + T +++ P+REL +QI+RE +K S K GG
Sbjct: 317 HI--LDNNCPSHAFEEPAQPT---GLVICPTRELAIQIMREARKFSHGSVAKCCVAY-GG 370
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A Q + + N I+V TPGR+ + GK+ ++LVLDE D +L F ++
Sbjct: 371 AAGFHQLKTMH-NGCHILVATPGRLLDFVEKGKVVFSNLKYLVLDEADRMLDMGFLSSIK 429
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++ H+ + ER T+M SAT P + A + ++ L V
Sbjct: 430 TVINHI-------------TMTPTEERITLMFSATFPNEIQELASVFLNNYLFV------ 470
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ GS +N KQ S V+K K + C
Sbjct: 471 ----------------VVGSVGAANTDVKQEVLS----------VSKFDKKAKLVEMCEE 504
Query: 410 AL---DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
L + + ++ F+ R L + +A +HGD + R L F+ G +
Sbjct: 505 ILINSEDEKILVFVEQKRVADFVGSYLCEKKFRATTMHGDRFQAQREQALAAFRTGVHNI 564
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC-EEPEVFVV 525
LV ++ARGLD+ +VVN DLP + Y HR GRTGRLG RG +S EE + +
Sbjct: 565 LVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGMSISFYDEEVDTCLT 624
Query: 526 KKMQKQLA 533
K + K L+
Sbjct: 625 KDLVKVLS 632
>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
Length = 614
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 119/448 (26%), Positives = 202/448 (45%), Gaps = 66/448 (14%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
++ F LGLP LL +E +G+ P+ +Q +IP +L+ DV+ + TG+GKT A+ LP
Sbjct: 4 SSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLP 63
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+L++ + + + +++AP+REL Q+ ++ V +
Sbjct: 64 LLART-------------QNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIY 110
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG++ Q AL K P VVGTPGR+ + G L G R +VLDE DE+L F +
Sbjct: 111 GGSDFGSQFRAL-KQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDD 169
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ +++ V + RQ + SAT+P + A +P ++ K
Sbjct: 170 VDWVLDQVPEK-----------------RQIALFSATMPKQIKAVAEKHLREPTEIRIK- 211
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
S +++N +++ K Y+ V + LR C
Sbjct: 212 -------------------SKTATNESIEQK------------YWLVKGVDKNQALLRIC 240
Query: 408 -VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
DA V F+ + ++ + + G++ L+GD+ + R + + K G+V +
Sbjct: 241 ETSEFDAMMV--FVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDM 298
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLDV VVN D+P D+ Y HR GRTGR GR G + E ++
Sbjct: 299 LVATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLS 358
Query: 527 KMQKQLAVPIQACEFTEGRLVIGKEEEK 554
+++ IQ E + V K ++
Sbjct: 359 TIERVTRKKIQQIELPTAKEVNAKRRDQ 386
>gi|433047478|ref|ZP_20234878.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE120]
gi|431569516|gb|ELI42459.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE120]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLTIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase [Pedobacter saltans DSM 12145]
gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
12145]
Length = 445
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/426 (29%), Positives = 205/426 (48%), Gaps = 68/426 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ +F + +L +E G+ PT +Q AIP IL DV+ + TG+GKT AY+LP+
Sbjct: 2 SKNFEDFKFNRQILNAIEEAGYTQPTPIQEKAIPPILNGQDVLGIAQTGTGKTAAYVLPM 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ K+ K + G+ DI A+I+AP+REL +QI +K +D ++V + G
Sbjct: 62 IMKL-----KFAQGD-------DIRALILAPTRELALQIEENVKIFSKYTDLRSVV-VFG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q + L K I++ TPGR ++ G + T +FLVLDE D+++ F +
Sbjct: 109 GIGPKAQADQLAKG-ADILIATPGRFMDLYLDGHIVTKKLQFLVLDEADKMMDMGFMPQI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
++++E V ++ RQ ++ SAT+ V R + ++ LL K
Sbjct: 168 NKVLEIVPKK-----------------RQNLLFSATMSEKVERLSENF----LLWPTK-- 204
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+E P P A+ +Q L Y V L+ K++ L+ V
Sbjct: 205 --VEVTPQATP-----------------AETVEQEL-------YFVPNLKTKINLLKIFV 238
Query: 409 HAL-DAQTVIAFMNNTRQLKDAVFKLEARGMKAAE---LHGDLGKLARSTTLKKFKNGEV 464
D +I F TR + + V++ R LH + G+ R ++ FKN EV
Sbjct: 239 EDDPDVSKLIIFCR-TRVVAENVYRFLLRRFNENHVKVLHANKGQNTRINSINSFKNDEV 297
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
R+LV +++ARG+DV+ V+N ++P Y HR GRTGR +G ++ C E +
Sbjct: 298 RILVATDVAARGIDVSSVSHVINFEVPVVYEDYVHRIGRTGRAFSQGKAITFCNPAEEYS 357
Query: 525 VKKMQK 530
++K++K
Sbjct: 358 IRKIEK 363
>gi|146300157|ref|YP_001194748.1| DEAD/DEAH box helicase [Flavobacterium johnsoniae UW101]
gi|146154575|gb|ABQ05429.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
UW101]
Length = 634
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 125/443 (28%), Positives = 208/443 (46%), Gaps = 78/443 (17%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPI 168
N F +LGL LL+ + GF P+EVQ AIP +L K+ D+V + TG+GKT A+ P+
Sbjct: 2 NKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ K+ + +A++++P+REL +QI E+K V + G
Sbjct: 62 IQKI-------------DADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ + Q +++ I+V TPGR+ ++ G ++ + +LDE DE+L+ F E +
Sbjct: 109 GASITEQAREIKRG-AQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAK 346
I+ P ++ T + SAT+P V R A+ + +P + V AK
Sbjct: 168 VSILSDT----------PD-------QKNTWLFSATMPQEVARIAKQFMSEPVEITVGAK 210
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
N SGS++ + H + + + + + L+R
Sbjct: 211 N-------------------SGSAT----------------VSHEFYLVNARDRYEALKR 235
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
A + F R + KL G AA LHGDL + R +K F+ ++++
Sbjct: 236 LADANPDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQM 295
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV---- 522
LV +++ARG+DV VVN LP + Y HR+GRTGR G+ GT + I + E+
Sbjct: 296 LVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKIS 355
Query: 523 ---FVVKKMQKQLAVP--IQACE 540
++K+ ++ A+P I+ CE
Sbjct: 356 SIERIIKQKFEEKAIPSGIEICE 378
>gi|419928197|ref|ZP_14445914.1| ATP-dependent RNA helicase DbpA [Escherichia coli 541-1]
gi|388405968|gb|EIL66380.1| ATP-dependent RNA helicase DbpA [Escherichia coli 541-1]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|417628513|ref|ZP_12278754.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_MHI813]
gi|345374864|gb|EGX06814.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_MHI813]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSIELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|432850020|ref|ZP_20081001.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE144]
gi|431400912|gb|ELG84270.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE144]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|383852804|ref|XP_003701915.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Megachile
rotundata]
Length = 609
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 123/446 (27%), Positives = 203/446 (45%), Gaps = 56/446 (12%)
Query: 71 KKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGF 130
+K IE P K ++ G + +++ ++ P F E PP +LE + ++G+
Sbjct: 74 RKDFYIEHPAVKNRSKEEVGQFRENAEITVKGDNIPNPIQHFEEGNFPPYVLEVIHKQGY 133
Query: 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKT 190
+ PT +Q+ P L D+V + TGSGKTL Y+LP + + + + S G+G
Sbjct: 134 SQPTAIQAQGWPIALSGKDLVAIAQTGSGKTLGYILPAIVHI-IHQPRLSPGDGPV---- 188
Query: 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGT 250
A+I+AP+REL QI +E+ G S + GGA + Q L + I + T
Sbjct: 189 ---ALILAPTRELAQQI-QEVANCFGESSGVRNTCIFGGAPKGPQAHDLERG-VEICIAT 243
Query: 251 PGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310
PGR+ + G + C +LVLDE D +L F + +I+E +
Sbjct: 244 PGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI--------------- 288
Query: 311 AMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSS 370
R +RQ +M SAT P V A + D + + G ++ S+
Sbjct: 289 --RPDRQVLMWSATWPKEVRALAEDFLTDYMHLNI------------------GSLTLSA 328
Query: 371 SNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAV 430
+++ +Q Q LK Y + ++ ++ + I F+ R++ D
Sbjct: 329 NHNIIQIVDVCQEFEKDLKLYRLLQEIGNEKEN-----------KTIIFVETKRKVDDIT 377
Query: 431 FKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL 490
+ G +A +HGD + R L++FK+G +LV +++ARGLDV + V+N D
Sbjct: 378 RNIRRDGWQALSIHGDKNQQERDHVLQEFKSGRAPILVATDVAARGLDVDDVKYVINFDY 437
Query: 491 PTDSIHYAHRAGRTGRLGRRGTVVSI 516
P+ S Y HR GRTGR + GT +
Sbjct: 438 PSSSEDYIHRIGRTGRRRQTGTAYAF 463
>gi|270004664|gb|EFA01112.1| hypothetical protein TcasGA2_TC010324 [Tribolium castaneum]
Length = 574
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 195/418 (46%), Gaps = 56/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
+L+ + P +F E G P ++ + + GF PT +QS P L D+V + TGS
Sbjct: 120 TLKGKCIPDLVFTFEEAGFPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGS 179
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL+Y+LP + + + + G+G A+++AP+REL QI +++ G S
Sbjct: 180 GKTLSYILPAIVHINH-QPRLLRGDGPI-------ALVLAPTRELAQQI-QQVATDFGRS 230
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
K + GGA + Q L + IV+ TPGR+ + + + + C +LVLDE D
Sbjct: 231 SKIRNTCVFGGAPKGPQANDL-MDGVEIVIATPGRLIDFLESNRTNLRRCTYLVLDEADR 289
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +I+E + R +RQT+M SAT P V A +
Sbjct: 290 MLDMGFEPQIRKIIEQI-----------------RPDRQTLMWSATWPKEVQALAAEFLK 332
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
D + + G + S++++ LQ + + Y TKL
Sbjct: 333 DYIQINV------------------GSLQLSANHNILQ-------IIDVCQEYEKETKLS 367
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
TL + + A I F+ +++ + K++ G A +HGD + R L+
Sbjct: 368 ----TLLKEIMAEKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQD 423
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
F+ G+ +LV +++ARGLDV + V+N D P++S Y HR GRTGR R GT +
Sbjct: 424 FRTGKAPILVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTF 481
>gi|16129304|ref|NP_415859.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
str. K-12 substr. MG1655]
gi|157160855|ref|YP_001458173.1| ATP-dependent RNA helicase DbpA [Escherichia coli HS]
gi|170020291|ref|YP_001725245.1| ATP-dependent RNA helicase DbpA [Escherichia coli ATCC 8739]
gi|170081022|ref|YP_001730342.1| ATP-dependent RNA helicase DbpA [Escherichia coli str. K-12 substr.
DH10B]
gi|188494462|ref|ZP_03001732.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
gi|194436972|ref|ZP_03069071.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
gi|238900578|ref|YP_002926374.1| ATP-dependent RNA helicase DbpA [Escherichia coli BW2952]
gi|251784846|ref|YP_002999150.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BL21(DE3)]
gi|253773655|ref|YP_003036486.1| ATP-dependent RNA helicase DbpA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161422|ref|YP_003044530.1| ATP-dependent RNA helicase DbpA [Escherichia coli B str. REL606]
gi|254288229|ref|YP_003053977.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BL21(DE3)]
gi|300927858|ref|ZP_07143420.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
gi|300948429|ref|ZP_07162531.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
gi|300954597|ref|ZP_07167042.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
gi|301022682|ref|ZP_07186535.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
gi|301647156|ref|ZP_07246977.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
gi|312971541|ref|ZP_07785716.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
gi|331641910|ref|ZP_08343045.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
gi|386280462|ref|ZP_10058128.1| ATP-independent RNA helicase dbpA [Escherichia sp. 4_1_40B]
gi|386595833|ref|YP_006092233.1| DEAD/DEAH box helicase [Escherichia coli DH1]
gi|386613873|ref|YP_006133539.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
gi|387611908|ref|YP_006115024.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
gi|387621061|ref|YP_006128688.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
gi|388477425|ref|YP_489613.1| ATP-dependent RNA helicase-specific for 23S rRNA [Escherichia coli
str. K-12 substr. W3110]
gi|404374712|ref|ZP_10979919.1| ATP-independent RNA helicase dbpA [Escherichia sp. 1_1_43]
gi|417262903|ref|ZP_12050365.1| ATP-independent RNA helicase DbpA [Escherichia coli 2.3916]
gi|417274541|ref|ZP_12061881.1| ATP-independent RNA helicase DbpA [Escherichia coli 2.4168]
gi|417278545|ref|ZP_12065860.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.2303]
gi|417289908|ref|ZP_12077191.1| ATP-independent RNA helicase DbpA [Escherichia coli B41]
gi|417612723|ref|ZP_12263186.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_EH250]
gi|417978849|ref|ZP_12619603.1| ATP-dependent RNA helicase DbpA [Escherichia coli XH001]
gi|418302584|ref|ZP_12914378.1| ATP-independent RNA helicase dbpA [Escherichia coli UMNF18]
gi|419153334|ref|ZP_13697914.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6C]
gi|419158781|ref|ZP_13703294.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6D]
gi|419163866|ref|ZP_13708328.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC6E]
gi|419174907|ref|ZP_13718756.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7B]
gi|419811453|ref|ZP_14336328.1| ATP-dependent RNA helicase DbpA [Escherichia coli O32:H37 str. P4]
gi|419940475|ref|ZP_14457210.1| ATP-dependent RNA helicase DbpA [Escherichia coli 75]
gi|421776817|ref|ZP_16213419.1| ATP-independent RNA helicase dbpA [Escherichia coli AD30]
gi|422765896|ref|ZP_16819623.1| DEAD/DEAH box helicase [Escherichia coli E1520]
gi|422770563|ref|ZP_16824254.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|422785964|ref|ZP_16838703.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|422789974|ref|ZP_16842679.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|422817329|ref|ZP_16865543.1| ATP-independent RNA helicase dbpA [Escherichia coli M919]
gi|423705156|ref|ZP_17679579.1| ATP-independent RNA helicase dbpA [Escherichia coli H730]
gi|432369417|ref|ZP_19612513.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE10]
gi|432416539|ref|ZP_19659155.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE44]
gi|432485049|ref|ZP_19726967.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE212]
gi|432563567|ref|ZP_19800168.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE51]
gi|432626921|ref|ZP_19862902.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE77]
gi|432636590|ref|ZP_19872470.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE81]
gi|432660605|ref|ZP_19896253.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE111]
gi|432670344|ref|ZP_19905880.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE119]
gi|432685155|ref|ZP_19920462.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE156]
gi|432691299|ref|ZP_19926533.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE161]
gi|432704054|ref|ZP_19939168.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE171]
gi|432736827|ref|ZP_19971594.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE42]
gi|432881274|ref|ZP_20097646.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE154]
gi|432954710|ref|ZP_20146734.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE197]
gi|433173172|ref|ZP_20357717.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE232]
gi|442593672|ref|ZP_21011605.1| ATP-dependent 23S rRNA helicase DbpA [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|442595898|ref|ZP_21013730.1| ATP-dependent 23S rRNA helicase DbpA [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|450242809|ref|ZP_21899927.1| ATP-dependent RNA helicase DbpA [Escherichia coli S17]
gi|416881|sp|P21693.2|DBPA_ECOLI RecName: Full=ATP-independent RNA helicase DbpA
gi|1742212|dbj|BAA14946.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
str. K12 substr. W3110]
gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
str. K-12 substr. MG1655]
gi|157066535|gb|ABV05790.1| ATP-independent RNA helicase DbpA [Escherichia coli HS]
gi|169755219|gb|ACA77918.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
gi|169888857|gb|ACB02564.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
str. K-12 substr. DH10B]
gi|188489661|gb|EDU64764.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
gi|194423955|gb|EDX39943.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
gi|238860048|gb|ACR62046.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BW2952]
gi|242377119|emb|CAQ31847.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BL21(DE3)]
gi|253324699|gb|ACT29301.1| DEAD/DEAH box helicase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973323|gb|ACT38994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
B str. REL606]
gi|253977536|gb|ACT43206.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
BL21(DE3)]
gi|260449522|gb|ACX39944.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
gi|299881170|gb|EFI89381.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
gi|300318431|gb|EFJ68215.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
gi|300452053|gb|EFK15673.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
gi|300464143|gb|EFK27636.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
gi|301074642|gb|EFK89448.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
gi|309701644|emb|CBJ00951.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
gi|310336138|gb|EFQ01338.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
gi|315135984|dbj|BAJ43143.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
gi|323937669|gb|EGB33937.1| DEAD/DEAH box helicase [Escherichia coli E1520]
gi|323942290|gb|EGB38461.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|323962410|gb|EGB57993.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|323973547|gb|EGB68732.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|331038708|gb|EGI10928.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
gi|332343042|gb|AEE56376.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
gi|339414682|gb|AEJ56354.1| ATP-independent RNA helicase dbpA [Escherichia coli UMNF18]
gi|344191512|gb|EGV45628.1| ATP-dependent RNA helicase DbpA [Escherichia coli XH001]
gi|345363890|gb|EGW96029.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_EH250]
gi|378001180|gb|EHV64240.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6C]
gi|378010238|gb|EHV73184.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6D]
gi|378012669|gb|EHV75597.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC6E]
gi|378035786|gb|EHV98339.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7B]
gi|385155777|gb|EIF17778.1| ATP-dependent RNA helicase DbpA [Escherichia coli O32:H37 str. P4]
gi|385539137|gb|EIF85977.1| ATP-independent RNA helicase dbpA [Escherichia coli M919]
gi|385704526|gb|EIG41599.1| ATP-independent RNA helicase dbpA [Escherichia coli H730]
gi|386122422|gb|EIG71033.1| ATP-independent RNA helicase dbpA [Escherichia sp. 4_1_40B]
gi|386223587|gb|EII45948.1| ATP-independent RNA helicase DbpA [Escherichia coli 2.3916]
gi|386232969|gb|EII64954.1| ATP-independent RNA helicase DbpA [Escherichia coli 2.4168]
gi|386238798|gb|EII75733.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.2303]
gi|386255946|gb|EIJ05634.1| ATP-independent RNA helicase DbpA [Escherichia coli B41]
gi|388403037|gb|EIL63580.1| ATP-dependent RNA helicase DbpA [Escherichia coli 75]
gi|404291781|gb|EJZ48636.1| ATP-independent RNA helicase dbpA [Escherichia sp. 1_1_43]
gi|408458199|gb|EKJ81988.1| ATP-independent RNA helicase dbpA [Escherichia coli AD30]
gi|430886917|gb|ELC09745.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE10]
gi|430941159|gb|ELC61318.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE44]
gi|431017175|gb|ELD30691.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE212]
gi|431096056|gb|ELE01651.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE51]
gi|431164869|gb|ELE65260.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE77]
gi|431172795|gb|ELE72899.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE81]
gi|431201249|gb|ELE99966.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE111]
gi|431211817|gb|ELF09773.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE119]
gi|431223377|gb|ELF20629.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE156]
gi|431228121|gb|ELF25244.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE161]
gi|431244751|gb|ELF39054.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE171]
gi|431284583|gb|ELF75435.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE42]
gi|431412224|gb|ELG95309.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE154]
gi|431469162|gb|ELH49094.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE197]
gi|431694895|gb|ELJ60239.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE232]
gi|441606353|emb|CCP96885.1| ATP-dependent 23S rRNA helicase DbpA [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|441655698|emb|CCP99643.1| ATP-dependent 23S rRNA helicase DbpA [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|449322749|gb|EMD12731.1| ATP-dependent RNA helicase DbpA [Escherichia coli S17]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|156375300|ref|XP_001630019.1| predicted protein [Nematostella vectensis]
gi|156217032|gb|EDO37956.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 200/417 (47%), Gaps = 57/417 (13%)
Query: 100 LEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSG 159
+E E P SF +L LPP L L ++ F VPT +Q ++ ++ D++ + TGSG
Sbjct: 30 IEGEDCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSG 89
Query: 160 KTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSD 219
KTLAY LP+ L+ K+ + G++ A+I+ P+REL Q+ + ++L
Sbjct: 90 KTLAYSLPLCML---LRTKAPSNPGDTPV-----ALILTPTRELMQQVFMNVSEMLD-VI 140
Query: 220 KKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDEL 279
+ + GG S Q ALR+ +VV TPGR+ ++ G L +LV+DE D +
Sbjct: 141 RCPGNPVCGGVPVSTQTIALREGA-DVVVATPGRLLDLCKRGALCLDKITYLVMDEADRM 199
Query: 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
L E + +IV G +G + RA RQT++ SAT+P S+ R ARS +
Sbjct: 200 LGMGMEEQLRKIV---GLATGTS----------RA-RQTLLWSATLPESLERLARSAVLN 245
Query: 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH 399
P+ +Q GPG L P S N+ L HY K Q
Sbjct: 246 PITIQV------------GPGGLIAP----SVQQNVVF----------LYHY---QKPQK 276
Query: 400 KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
++TLR + VI F ++ + + L+ A+ LH + + R +K F
Sbjct: 277 LLETLRTTPYP----PVIVFTSSIQNVDYVTELLKQEQFHASGLHSEKPQDYRFKLVKAF 332
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
++G+V +LV ++++RGLD E V+N DLP Y HR GRTGR+G G S
Sbjct: 333 RDGKVDILVATDVASRGLDFPEVTHVINYDLPDTIECYIHRCGRTGRIGHHGIATSF 389
>gi|417137298|ref|ZP_11981088.1| ATP-independent RNA helicase DbpA [Escherichia coli 97.0259]
gi|417307842|ref|ZP_12094702.1| ATP-independent RNA helicase dbpA [Escherichia coli PCN033]
gi|432391618|ref|ZP_19634465.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE21]
gi|338770621|gb|EGP25381.1| ATP-independent RNA helicase dbpA [Escherichia coli PCN033]
gi|386158862|gb|EIH15195.1| ATP-independent RNA helicase DbpA [Escherichia coli 97.0259]
gi|430920529|gb|ELC41416.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE21]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|307720439|ref|YP_003891579.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306978532|gb|ADN08567.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 518
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 201/429 (46%), Gaps = 70/429 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGL P +L+ ++ GF +P+ +Q+ AIP IL+ D+V Q++TG+GKT A+ LP+LS
Sbjct: 20 TFDSLGLKPEILKSVKFAGFTIPSPIQAQAIPIILEGRDMVGQAHTGTGKTAAFSLPVLS 79
Query: 171 KVGPLKDKSSNGNGESGKKTD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ K D +E +++ P+REL Q+ EI K K V + G
Sbjct: 80 NM----------------KLDGSVEMLVITPTRELATQVSDEIFKYGRNLGVKTVT-VYG 122
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G++ RQ + + + ++VV TPGR+ ++ L+ +VLDE DE+L F + +
Sbjct: 123 GSSYKRQLDLIGRG-ASVVVATPGRMLDLLKRNMLNNFAPSVVVLDEADEMLDMGFLDDI 181
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+ I + + RQT++ SAT+P + A DP V
Sbjct: 182 NEIFSY-----------------LPTNRQTLLFSATMPQPIKNLANRILKDPAFVSI--- 221
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
G ++N++++ + YY + + + D + R +
Sbjct: 222 -----------------TKGETTNTDIE------------QEYYVIDE-HERDDAIIRLM 251
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A D + + F ++ L G A LHGD+ + R T +K FKN V+VLV
Sbjct: 252 DAEDTKKAVVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKNDSVKVLV 311
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+ V V N +P D Y HR GRTGR G +G +++ E ++++
Sbjct: 312 ATDVAARGIHVNNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRI 371
Query: 529 QKQLAVPIQ 537
++++ +
Sbjct: 372 KQKVGTSMN 380
>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
Length = 1201
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 192/414 (46%), Gaps = 56/414 (13%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E P F E PP ++E + REG+ PT +Q+ P L D+V + TGSGKTL
Sbjct: 105 EHVPNPIQYFEEGNFPPYVMENIHREGYLRPTPIQAQGWPIALSGRDLVAIAQTGSGKTL 164
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
Y+LP + + + + S+G+G +I+AP+REL QI +E+ G
Sbjct: 165 GYILPAIVHI-IHQPRISSGDGPI-------VLILAPTRELAQQI-QEVANSFGEMAAVR 215
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
+ GGA + Q L K I + TPGR+ + G + + C +LVLDE D +L
Sbjct: 216 NTCIFGGAPKGPQAHDLEKG-IEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRMLDM 274
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +I+E + R +RQ +M SAT P V A + D +
Sbjct: 275 GFEPQIRKIIEQI-----------------RPDRQVLMWSATWPKEVRALAEDFLTDYIH 317
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
+ G ++ S++++ Q Q LK Y +L ++
Sbjct: 318 LNI------------------GSLTLSANHNITQIIDVCQEYEKDLKLY----RLLQEIG 355
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
T + + +T+I F+ R++ D + G +A +HGD + R L++F+NG
Sbjct: 356 TEK------ENKTII-FVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNG 408
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+ +LV +++ARGLDV + V+N D P+ S Y HR GRTGR + GT +
Sbjct: 409 KAPILVATDVAARGLDVDDVKYVINFDFPSSSEDYIHRIGRTGRKRQTGTAYAF 462
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 188/405 (46%), Gaps = 56/405 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F E G P +L + R+GF PT +Q+ P L D+V + TGSGKTLAY+LP +
Sbjct: 707 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 766
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ S N +G A+I+AP+REL QI +++ G S + + GGA
Sbjct: 767 INHQPRLSRN-DGPI-------ALILAPTRELAQQI-QQVASDFGMSSQVRNTCIFGGAP 817
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q L + I + TPGR+ + G + C +LVLDE D +L F + +I
Sbjct: 818 KGPQARDLERG-VEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKI 876
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
VE + R +RQT+M SAT P V A + D + +
Sbjct: 877 VEQI-----------------RPDRQTLMWSATWPKEVRNLAEEFLTDYIQINI------ 913
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G + +++++ LQ + + Y +KL + L +
Sbjct: 914 ------------GSLQLAANHNILQ-------IVDVCEEYEKESKL---MKLLEEISNEP 951
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ +T+I F+ R++ D + G +A +HGD + R L +F+N +LV +
Sbjct: 952 ENKTII-FVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAILVATD 1010
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
++ARGLDV + V+NLD P++S Y HR GRTGR R GT +
Sbjct: 1011 VAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAF 1055
>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
ATCC 43768]
gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
ATCC 43768]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 194/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++ P+REL Q+ + +VGGA+
Sbjct: 65 LTKRSEKPGKGP---------RALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGAS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P ++RQT++ SAT +V + AR DP +++ + V
Sbjct: 174 IVE-------ATP----------SDRQTLLFSATWDGAVGKLARKLTKDPEVIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DDQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|402821009|ref|ZP_10870569.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
gi|402510241|gb|EJW20510.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
Length = 481
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 119/419 (28%), Positives = 196/419 (46%), Gaps = 62/419 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELGL P ++ + G+ PT +Q+ AIP ++ DV+ + TG+GKT ++ LP++ +
Sbjct: 3 FDELGLAPEIMTAINEAGYTTPTPIQAEAIPHVIAGRDVLGIAQTGTGKTASFTLPMIHR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K ++ K +I+ P+REL Q+ + G + K L+GG +
Sbjct: 63 L--MKGRA--------KARMPRTLILEPTRELAAQVADNF-DVYGKNTKLTKALLIGGVS 111
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
QE+A+ + +++ TPGR+ + G + G LV+DE D +L F + RI
Sbjct: 112 FGDQEKAIMRGA-DVLIATPGRLLDHVERGGVLLRGVEVLVIDEADRMLDMGFIPDIERI 170
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
V+ + RQT+ SAT+P + R + P V+ V P
Sbjct: 171 VK-----------------LLPFTRQTLFFSATMPPEITRLTEQFLSAPARVE---VAP- 209
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
SS+N N+ + V+K Q K+ TL++
Sbjct: 210 ----------------PSSTNKNVS------------QLLVSVSKAQ-KLKTLKKLFDEE 240
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D I F N R + D + L+ G A LHGD+ + R L++FK GE L+ ++
Sbjct: 241 DVTNGIIFCNRKRDIGDLLNALQKSGYPAVSLHGDMDQHMRLKMLERFKGGEATYLIASD 300
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARGLD+ V N D+PT + Y HR GRTGR GR+G +++ + + V ++K
Sbjct: 301 VAARGLDIPAVSHVFNYDVPTHAEDYVHRIGRTGRAGRKGAAITLFSKEDGKYVDAIEK 359
>gi|419354661|ref|ZP_13895932.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13C]
gi|419359882|ref|ZP_13901106.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13D]
gi|378203923|gb|EHX64340.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13C]
gi|378206275|gb|EHX66681.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC13D]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|297521633|ref|ZP_06940019.1| ATP-dependent RNA helicase DbpA [Escherichia coli OP50]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|240278937|gb|EER42443.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H143]
Length = 539
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 190/438 (43%), Gaps = 70/438 (15%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P +SF LGL P L+ L PT +Q A IP ILK D + S TGSGKT+A+
Sbjct: 105 PSDISSFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFA 164
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
PIL K + I AVI+ P+REL +QI +IK + P K +
Sbjct: 165 APILQKW-------------AEDPFGIFAVILTPTRELALQIFEQIKAISAPQSLKPI-- 209
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLS 281
L+ G R + +P IV+ TPGR+A+ I+++G G R +V DE D LL+
Sbjct: 210 LITGGTEMRPQAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLA 269
Query: 282 FNFREAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVPFSVIRAARSW 336
SG P SAL RQT++ +ATV
Sbjct: 270 -----------------SGPGSMLPDVETCLSALPPSTARQTLLFTATV----------- 301
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
V L+SMP P N S N S+PP LK Y
Sbjct: 302 --------TPEVRALKSMPR--PANKLPIFVTEVSTEN------KASIPPTLKQTYLQVP 345
Query: 397 LQHKVDTLRRCVH--ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
L H+ L + A + I F N T+ L G + LH L + R+
Sbjct: 346 LTHREAFLHTLISTAANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTA 405
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
L +F+ R+LV +++ARGLD+ LV+N D+P + Y HR GRT R GR G V
Sbjct: 406 NLSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAV 465
Query: 515 SICEEPEVFVVKKMQKQL 532
++ + +V +V ++ ++
Sbjct: 466 TLVGQRDVQLVLAIEDRV 483
>gi|157156397|ref|YP_001462652.1| ATP-dependent RNA helicase DbpA [Escherichia coli E24377A]
gi|193062707|ref|ZP_03043801.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
gi|194426050|ref|ZP_03058606.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
gi|260843691|ref|YP_003221469.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O103:H2 str. 12009]
gi|260855042|ref|YP_003228933.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
11368]
gi|260867791|ref|YP_003234193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O111:H- str. 11128]
gi|300822487|ref|ZP_07102626.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
gi|300904996|ref|ZP_07122814.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
gi|301305840|ref|ZP_07211925.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
gi|331667742|ref|ZP_08368606.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
gi|331677132|ref|ZP_08377828.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
gi|415790204|ref|ZP_11494923.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
gi|415796583|ref|ZP_11497670.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
gi|415819271|ref|ZP_11508714.1| ATP-independent RNA helicase dbpA [Escherichia coli OK1180]
gi|415865102|ref|ZP_11538036.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
gi|415879026|ref|ZP_11544536.1| ATP-independent RNA helicase DbpA [Escherichia coli MS 79-10]
gi|417133963|ref|ZP_11978748.1| ATP-independent RNA helicase DbpA [Escherichia coli 5.0588]
gi|417172708|ref|ZP_12002741.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.2608]
gi|417181436|ref|ZP_12008571.1| ATP-independent RNA helicase DbpA [Escherichia coli 93.0624]
gi|417199635|ref|ZP_12017038.1| ATP-independent RNA helicase DbpA [Escherichia coli 4.0522]
gi|417223109|ref|ZP_12026549.1| ATP-independent RNA helicase DbpA [Escherichia coli 96.154]
gi|417253881|ref|ZP_12045637.1| ATP-independent RNA helicase DbpA [Escherichia coli 4.0967]
gi|417266357|ref|ZP_12053725.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.3884]
gi|417297650|ref|ZP_12084894.1| ATP-independent RNA helicase DbpA [Escherichia coli 900105 (10e)]
gi|417591351|ref|ZP_12242055.1| ATP-independent RNA helicase dbpA [Escherichia coli 2534-86]
gi|417602006|ref|ZP_12252579.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_94C]
gi|417623110|ref|ZP_12273418.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_H.1.8]
gi|417638719|ref|ZP_12288878.1| ATP-independent RNA helicase dbpA [Escherichia coli TX1999]
gi|418944423|ref|ZP_13497486.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H43 str.
T22]
gi|419169387|ref|ZP_13713780.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC7A]
gi|419180414|ref|ZP_13724035.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7C]
gi|419185927|ref|ZP_13729448.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7D]
gi|419196611|ref|ZP_13740009.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC8A]
gi|419209047|ref|ZP_13752149.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8C]
gi|419215264|ref|ZP_13758279.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8D]
gi|419220949|ref|ZP_13763890.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8E]
gi|419226344|ref|ZP_13769215.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9A]
gi|419231982|ref|ZP_13774767.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9B]
gi|419237411|ref|ZP_13780143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9C]
gi|419242925|ref|ZP_13785570.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9D]
gi|419248674|ref|ZP_13791270.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9E]
gi|419254498|ref|ZP_13797026.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10A]
gi|419260707|ref|ZP_13803139.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10B]
gi|419266627|ref|ZP_13808994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10C]
gi|419283656|ref|ZP_13825850.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10F]
gi|419289261|ref|ZP_13831357.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC11A]
gi|419294451|ref|ZP_13836499.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC11B]
gi|419299858|ref|ZP_13841864.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11C]
gi|419305989|ref|ZP_13847897.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11D]
gi|419311076|ref|ZP_13852946.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11E]
gi|419316358|ref|ZP_13858177.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC12A]
gi|419322342|ref|ZP_13864065.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12B]
gi|419328459|ref|ZP_13870084.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC12C]
gi|419334084|ref|ZP_13875628.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12D]
gi|419339296|ref|ZP_13880778.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12E]
gi|419391173|ref|ZP_13931995.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15A]
gi|419396210|ref|ZP_13936989.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15B]
gi|419401589|ref|ZP_13942316.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15C]
gi|419406775|ref|ZP_13947467.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15D]
gi|419412280|ref|ZP_13952943.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15E]
gi|419871866|ref|ZP_14393914.1| ATP-dependent RNA helicase DbpA [Escherichia coli O103:H2 str.
CVM9450]
gi|419876025|ref|ZP_14397806.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CVM9534]
gi|419879436|ref|ZP_14400868.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CVM9545]
gi|419897835|ref|ZP_14417410.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CVM9574]
gi|419906136|ref|ZP_14425064.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O26:H11 str. CVM10026]
gi|420087651|ref|ZP_14599599.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CVM9602]
gi|420116642|ref|ZP_14626020.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10021]
gi|420118778|ref|ZP_14628098.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10030]
gi|420125356|ref|ZP_14634169.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10224]
gi|420131741|ref|ZP_14640155.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM9952]
gi|420385267|ref|ZP_14884633.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa12]
gi|420391053|ref|ZP_14890313.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
EPEC C342-62]
gi|422762614|ref|ZP_16816370.1| DEAD/DEAH box helicase [Escherichia coli E1167]
gi|423709394|ref|ZP_17683772.1| ATP-independent RNA helicase dbpA [Escherichia coli B799]
gi|424751628|ref|ZP_18179655.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424765402|ref|ZP_18192802.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424770568|ref|ZP_18197763.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425378949|ref|ZP_18763118.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1865]
gi|432376540|ref|ZP_19619539.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE12]
gi|432533572|ref|ZP_19770559.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE234]
gi|432805443|ref|ZP_20039383.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE91]
gi|432834394|ref|ZP_20067935.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE136]
gi|432933931|ref|ZP_20133548.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE184]
gi|432946769|ref|ZP_20142318.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE196]
gi|433042835|ref|ZP_20230351.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE117]
gi|433129705|ref|ZP_20315164.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE163]
gi|433134502|ref|ZP_20319866.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE166]
gi|433193353|ref|ZP_20377360.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE90]
gi|157078427|gb|ABV18135.1| ATP-independent RNA helicase DbpA [Escherichia coli E24377A]
gi|192931829|gb|EDV84429.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
gi|194416105|gb|EDX32371.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
gi|257753691|dbj|BAI25193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O26:H11 str. 11368]
gi|257758838|dbj|BAI30335.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O103:H2 str. 12009]
gi|257764147|dbj|BAI35642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O111:H- str. 11128]
gi|300403145|gb|EFJ86683.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
gi|300524903|gb|EFK45972.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
gi|300838930|gb|EFK66690.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
gi|315254386|gb|EFU34354.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
gi|323153565|gb|EFZ39816.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
gi|323162444|gb|EFZ48296.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
gi|323179693|gb|EFZ65254.1| ATP-independent RNA helicase dbpA [Escherichia coli OK1180]
gi|324117462|gb|EGC11368.1| DEAD/DEAH box helicase [Escherichia coli E1167]
gi|331065327|gb|EGI37222.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
gi|331075821|gb|EGI47119.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
gi|342927034|gb|EGU95756.1| ATP-independent RNA helicase DbpA [Escherichia coli MS 79-10]
gi|345341838|gb|EGW74238.1| ATP-independent RNA helicase dbpA [Escherichia coli 2534-86]
gi|345351240|gb|EGW83503.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_94C]
gi|345380195|gb|EGX12095.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_H.1.8]
gi|345394517|gb|EGX24277.1| ATP-independent RNA helicase dbpA [Escherichia coli TX1999]
gi|375320269|gb|EHS66251.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H43 str.
T22]
gi|378017814|gb|EHV80684.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC7A]
gi|378026335|gb|EHV88974.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7C]
gi|378031351|gb|EHV93939.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC7D]
gi|378049927|gb|EHW12263.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC8A]
gi|378057306|gb|EHW19540.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8C]
gi|378065222|gb|EHW27371.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8D]
gi|378068765|gb|EHW30861.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8E]
gi|378077876|gb|EHW39869.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9A]
gi|378080199|gb|EHW42164.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9B]
gi|378086083|gb|EHW47963.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9C]
gi|378093132|gb|EHW54950.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9D]
gi|378097810|gb|EHW59557.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC9E]
gi|378103155|gb|EHW64826.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10A]
gi|378109910|gb|EHW71510.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10B]
gi|378114026|gb|EHW75584.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10C]
gi|378131760|gb|EHW93114.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC11A]
gi|378135825|gb|EHW97127.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC10F]
gi|378143400|gb|EHX04592.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC11B]
gi|378151234|gb|EHX12347.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11D]
gi|378153312|gb|EHX14397.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11C]
gi|378159674|gb|EHX20678.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC11E]
gi|378171265|gb|EHX32137.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12B]
gi|378172370|gb|EHX33222.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC12A]
gi|378173981|gb|EHX34810.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC12C]
gi|378186297|gb|EHX46920.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12D]
gi|378192396|gb|EHX52955.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC12E]
gi|378239655|gb|EHX99635.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15A]
gi|378248548|gb|EHY08462.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15B]
gi|378249243|gb|EHY09153.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15C]
gi|378255900|gb|EHY15755.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15D]
gi|378260468|gb|EHY20273.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC15E]
gi|385706184|gb|EIG43238.1| ATP-independent RNA helicase dbpA [Escherichia coli B799]
gi|386151817|gb|EIH03106.1| ATP-independent RNA helicase DbpA [Escherichia coli 5.0588]
gi|386180406|gb|EIH57880.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.2608]
gi|386185258|gb|EIH67991.1| ATP-independent RNA helicase DbpA [Escherichia coli 93.0624]
gi|386188165|gb|EIH76973.1| ATP-independent RNA helicase DbpA [Escherichia coli 4.0522]
gi|386202911|gb|EII01902.1| ATP-independent RNA helicase DbpA [Escherichia coli 96.154]
gi|386215808|gb|EII32300.1| ATP-independent RNA helicase DbpA [Escherichia coli 4.0967]
gi|386231167|gb|EII58515.1| ATP-independent RNA helicase DbpA [Escherichia coli 3.3884]
gi|386258862|gb|EIJ14339.1| ATP-independent RNA helicase DbpA [Escherichia coli 900105 (10e)]
gi|388336069|gb|EIL02617.1| ATP-dependent RNA helicase DbpA [Escherichia coli O103:H2 str.
CVM9450]
gi|388345839|gb|EIL11583.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CVM9534]
gi|388354657|gb|EIL19555.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CVM9574]
gi|388371073|gb|EIL34563.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CVM9545]
gi|388379827|gb|EIL42465.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O26:H11 str. CVM10026]
gi|391307199|gb|EIQ64937.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa12]
gi|391313529|gb|EIQ71112.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
EPEC C342-62]
gi|394392431|gb|EJE69213.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CVM9602]
gi|394395247|gb|EJE71719.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10224]
gi|394403118|gb|EJE78789.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10021]
gi|394431180|gb|EJF03414.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM9952]
gi|394432769|gb|EJF04836.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CVM10030]
gi|408300046|gb|EKJ17800.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1865]
gi|421936626|gb|EKT94288.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421939289|gb|EKT96817.1| ATP-dependent RNA helicase DbpA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421942100|gb|EKT99455.1| ATP-dependent RNA helicase DbpA [Escherichia coli O111:H8 str.
CFSAN001632]
gi|430899764|gb|ELC21857.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE12]
gi|431062217|gb|ELD71495.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE234]
gi|431355809|gb|ELG42504.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE91]
gi|431386230|gb|ELG70187.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE136]
gi|431454403|gb|ELH34780.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE184]
gi|431459924|gb|ELH40214.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE196]
gi|431558465|gb|ELI32086.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE117]
gi|431649495|gb|ELJ16851.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE163]
gi|431659897|gb|ELJ26786.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE166]
gi|431718826|gb|ELJ82896.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE90]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|307309898|ref|ZP_07589548.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|378713279|ref|YP_005278172.1| DEAD/DEAH box helicase [Escherichia coli KO11FL]
gi|386608680|ref|YP_006124166.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
W]
gi|386701698|ref|YP_006165535.1| ATP-dependent RNA helicase DbpA [Escherichia coli KO11FL]
gi|386709137|ref|YP_006172858.1| ATP-dependent RNA helicase DbpA [Escherichia coli W]
gi|306909616|gb|EFN40110.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|315060597|gb|ADT74924.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
W]
gi|323378840|gb|ADX51108.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11FL]
gi|383393225|gb|AFH18183.1| ATP-dependent RNA helicase DbpA [Escherichia coli KO11FL]
gi|383404829|gb|AFH11072.1| ATP-dependent RNA helicase DbpA [Escherichia coli W]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|432580023|ref|ZP_19816452.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE56]
gi|431106879|gb|ELE11068.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE56]
Length = 457
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|425768778|gb|EKV07293.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium digitatum
Pd1]
gi|425770200|gb|EKV08673.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium digitatum
PHI26]
Length = 520
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 133/441 (30%), Positives = 208/441 (47%), Gaps = 68/441 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
++F EL + P L+ L PT +Q A IP ILK D + S TGSGKT+A+ +PI+
Sbjct: 90 STFAELDVAPWLVSSLTAMAIKRPTAIQKACIPEILKGKDCIGGSRTGSGKTMAFAVPIM 149
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ + N G I A+++ P+REL +QI + + + P + K + LV G
Sbjct: 150 QQW------ARNPFG-------IYALVLTPTRELALQIYEQFRAVSAPQNMKPI--LVVG 194
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCR---FLVLDEIDELLSFNFR 285
RQ+ N+P +V+ TPGR+A+ I +G G R +VLDE D LL+
Sbjct: 195 GVDMRQQAIELANRPHVVIATPGRLADHIKTSGVDTVAGLRRVKMVVLDEADRLLASGPG 254
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ + +G AL AERQT++ +AT+ V RA
Sbjct: 255 SMLPDVETCLG------------ALPPSAERQTLLFTATMTAEV-RA------------- 288
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
L+SMPA G P+ + + Q K +PP LK Y + H+ L
Sbjct: 289 -----LKSMPAAGN---KPPIFTTEIGTENQGK-----IPPTLKQTYLKVPMTHREAFL- 334
Query: 406 RCVHALDA------QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
HAL + + VI F N+T+ L G + LH L + R+ L +F
Sbjct: 335 ---HALLSTEVNVTKPVIVFCNHTKTCDLLERTLRRLGHRITSLHSILPQSERTANLARF 391
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ RVLV ++++RGLD+ +LV+N D+P + Y HR GRT R GR G ++ +
Sbjct: 392 RATAARVLVATDVASRGLDIPSVELVINFDVPRNPDDYVHRVGRTARAGRSGEATTLVGQ 451
Query: 520 PEVFVVKKMQKQLAVPIQACE 540
+V +V +++++ ++ E
Sbjct: 452 RDVELVLAIEERVGRQMEEFE 472
>gi|392538647|ref|ZP_10285784.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 465
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 197/443 (44%), Gaps = 72/443 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + +G+ PT +Q+ AIP+I++ DV+ + TG+GKT + LP++
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ G K + A+I+AP+REL +Q+ +++ S+ + + GG
Sbjct: 62 RLS---------TGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFV-VYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK I+V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMQRLRKGVD-ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ M A+RQ +M SAT FS
Sbjct: 171 IIAK-----------------MPAKRQNLMFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S + N AK QS+ Y V K K L + +
Sbjct: 190 -DDIRALAKGLINDPVEISVAAKNTTAKSVTQSV-------YAVDK-GRKTALLSHLIRS 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V +LE + A +HG+ + AR L FK+GEVRVLV
Sbjct: 241 NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S +
Sbjct: 301 DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDD--------- 351
Query: 531 QLAVPIQACEFTEGRLVIGKEEE 553
AV + E G L+ EEE
Sbjct: 352 --AVDLYGIERFIGELIPRAEEE 372
>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
gi|74669652|sp|Q4WJE9.1|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
Length = 472
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 132/450 (29%), Positives = 205/450 (45%), Gaps = 66/450 (14%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
ES P A SF +LG+ L E E G+ PT +Q+ +IP L+ D++ + TGSGKT
Sbjct: 46 ESRP-APKSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTA 104
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
A+ LPIL + N +S +I+AP+REL QI + + L G +
Sbjct: 105 AFALPILQALME--------NPQS-----FFGLILAPTRELAFQISKSFESL-GSTINVR 150
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLS 281
+VGG + Q AL K KP I+V TPGR+ + + ++LV+DE D LL
Sbjct: 151 CAVIVGGMDMVSQSIALGK-KPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLD 209
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
+F + +I++ + R ER+T + SAT+ V R+
Sbjct: 210 MDFGPLLDKILKVLPR-----------------ERRTFLFSATMSSKVESLQRA------ 246
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
+LS P+ S S++ Q L Y +HK
Sbjct: 247 -------------------SLSNPLRVSVSSNKYQTVST-------LLQSYLFLPHKHKD 280
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
L ++ Q+ I F + + F L + G A LHG L + AR L KF++
Sbjct: 281 IYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRS 340
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+LV +++ARGLD+ D+V+N DLPTDS Y HR GRT R G+ G +S + +
Sbjct: 341 RSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYD 400
Query: 522 VFVVKKMQKQLAVPIQACEFTEGRLVIGKE 551
V + +++ L ++ E + +++ E
Sbjct: 401 VEIWLRIEGALGKKLKEYELEKDEVMVLAE 430
>gi|367016345|ref|XP_003682671.1| hypothetical protein TDEL_0G00930 [Torulaspora delbrueckii]
gi|359750334|emb|CCE93460.1| hypothetical protein TDEL_0G00930 [Torulaspora delbrueckii]
Length = 436
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 134/460 (29%), Positives = 224/460 (48%), Gaps = 65/460 (14%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
+ ++F LGLP L++ L PT +Q IP+I+K D + + TGSGKT+A+ P
Sbjct: 5 SVSTFKSLGLPRWLVDALSAMRITQPTSIQKGCIPAIMKGGDCIGGAKTGSGKTIAFAAP 64
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+L+K S + +G G V++ P+REL MQI + LG S V +V
Sbjct: 65 MLTKW------SEDPSGMFG-------VVLTPTRELAMQIAEQFTA-LGSSMNIRVSIVV 110
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIA-EISAAGKLHTHG---CRFLVLDEIDELLSFN 283
GG + +Q L++ KP ++ TPGR+A I +G+ G +FLVLDE D LL+
Sbjct: 111 GGESIVKQALELQR-KPHFIIATPGRLAHHILNSGEDTVGGLMRAKFLVLDEADSLLTST 169
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
F + ++ V SAL + +RQT++ +AT+ V R+ P
Sbjct: 170 FAKDLNVCV---------------SALPPKDKRQTLLFTATITDQV----RALQDAP--- 207
Query: 344 QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKH---YYCVTKLQHK 400
+N PL N++ P S L+ + +P +K Y+ +T ++K
Sbjct: 208 SQENKPPLYCYEVENVDNVAVP-------STLKTEYI--LIPEYVKEAYLYHLLTSEEYK 258
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
D+ +I F+N T + L+ ++ A LH + + R+ +L++F+
Sbjct: 259 -----------DSSAII-FVNRTMTAEIMRRTLKNLDIRVASLHSQMPQQERTNSLQRFR 306
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
RVL+ ++++RGLD+ +LVVN D+P+D Y HR+GRT R GRRG +S +
Sbjct: 307 ANAARVLIATDVASRGLDIPVVELVVNYDIPSDPDVYIHRSGRTARAGRRGDAISFITQR 366
Query: 521 EVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
++ ++ ++ ++ ++ C VI K K +A R
Sbjct: 367 DISRIEAIETRINKKMEECTLVGDTAVIRKSLNKVTKAKR 406
>gi|389638890|ref|XP_003717078.1| ATP-dependent RNA helicase DBP8 [Magnaporthe oryzae 70-15]
gi|374095502|sp|A4R8G3.3|DBP8_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP8
gi|351642897|gb|EHA50759.1| ATP-dependent RNA helicase DBP8 [Magnaporthe oryzae 70-15]
Length = 579
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 219/456 (48%), Gaps = 65/456 (14%)
Query: 92 KAAGVKKSLEIESAPFAANSFLE-LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDV 150
+AAG K+ L AP N+ E LG+ P L++ L PT +Q I ILK D
Sbjct: 133 QAAGKKRIL----APTDQNTTFESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDC 188
Query: 151 VIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210
+ S TGSGKT+A+ +PIL K +D S+ I AV++ +REL +QI +
Sbjct: 189 IGGSRTGSGKTIAFAVPILQKYA--QDPSA-----------IFAVVLTATRELALQIYEQ 235
Query: 211 IKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCR 269
K + P KA ++GG++ Q AL +P+IV+ TPGR+A+ I ++G+ G R
Sbjct: 236 FKAVSSPHVLKAAL-IIGGSDMRSQAIAL-AQRPSIVIATPGRLADHIRSSGEDTICGLR 293
Query: 270 ---FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326
FLVLDE D LLS +M + H+ E + L +RQT++ +ATV
Sbjct: 294 RVKFLVLDEADRLLSSKGPGSM---LPHID--------ECMAVLPPPEDRQTLLFTATV- 341
Query: 327 FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPP 386
V L+ MP T PG P+ ++ + A +P
Sbjct: 342 ------------------TPEVRALKEMP-TRPGK--EPVHVCEVDTQVLA------IPD 374
Query: 387 ALKHYYCVTKLQHKVDTLRRCV--HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELH 444
+LK Y + H+ L + A +++I F+N T + L + LH
Sbjct: 375 SLKQSYIQLTVTHREHFLHEFLLTAANTERSIIIFVNRTSTAQFLHHLLRLLDHRVTSLH 434
Query: 445 GDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRT 504
L + R L +F+ R+LV ++++RGLD+ E +VVN DLP D Y HR GRT
Sbjct: 435 SKLRQQQRIDNLGRFRASAARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRVGRT 494
Query: 505 GRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE 540
R GR+G V+ + +V +V ++K++ P++ E
Sbjct: 495 ARAGRKGEAVNFVGQRDVELVLAIEKRVGRPMEKWE 530
>gi|345299480|ref|YP_004828838.1| DEAD/DEAH box helicase [Enterobacter asburiae LF7a]
gi|345093417|gb|AEN65053.1| DEAD/DEAH box helicase domain protein [Enterobacter asburiae LF7a]
Length = 457
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 183/405 (45%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP L+ L G+ T VQ+AA+P+IL+ DV +Q+ TGSGKT A+ L +L +
Sbjct: 10 LPAAQLDNLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQHIDVAL 69
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
K+ +++++ P+REL Q+ E+++L + L GG Q
Sbjct: 70 FKT-------------QSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A+RQT++ SAT P ++ + +PL ++ V L
Sbjct: 175 ----------------PADRQTLLFSATWPEAIAAISGRVQKNPLTIEIDTVDAL----- 213
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
PA++ + T Q K+ L++ + +
Sbjct: 214 -----------------------------PAIEQQFFETSQQGKITLLQKLLSQHKPASC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L A G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|417689290|ref|ZP_12338525.1| ATP-independent RNA helicase dbpA [Shigella boydii 5216-82]
gi|332091754|gb|EGI96834.1| ATP-independent RNA helicase dbpA [Shigella boydii 5216-82]
Length = 457
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQLFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTQKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|422975788|ref|ZP_16976782.1| ATP-independent RNA helicase dbpA [Escherichia coli TA124]
gi|371594770|gb|EHN83629.1| ATP-independent RNA helicase dbpA [Escherichia coli TA124]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|416816611|ref|ZP_11892510.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
3256-97]
gi|419120083|ref|ZP_13665054.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5B]
gi|320653569|gb|EFX21674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|377969608|gb|EHV32984.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5B]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|357505249|ref|XP_003622913.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
gi|355497928|gb|AES79131.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
Length = 1155
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 139/490 (28%), Positives = 220/490 (44%), Gaps = 77/490 (15%)
Query: 50 LASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAG--------VKKSLE 101
L+S G KS N++ +P +P P A A RS K + L
Sbjct: 663 LSSFGTKSRTTHKNRDHQCEPYITNPP--PPA---AARSSNCKLTTPLRQPISIFRMKLR 717
Query: 102 IESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKT 161
+E SF +LGLP L+E E+ G+ P E+Q AIP L+ D++ + TGSGKT
Sbjct: 718 MEEENKEMKSFKDLGLPESLVEACEKVGWKTPLEIQIEAIPPALEGKDLIGLAKTGSGKT 777
Query: 162 LAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKK 221
A+ LPIL + E+ + A +++P+REL +QI + + LG
Sbjct: 778 GAFALPILHAL-----------LEAPRPNHFFACVMSPTRELAIQISEQFEA-LGSEIGV 825
Query: 222 AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELL 280
LVGG + +Q + K P I+VGTPGR+ + + ++LVLDE D LL
Sbjct: 826 KCAVLVGGIDMVQQSVKIAK-LPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLL 884
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
+ +F E+++ I+ G PR ER+T + SAT+ V + R +P
Sbjct: 885 NEDFEESLNEIL-------GMIPR----------ERRTFLFSATMTNKVEKLQRVCLRNP 927
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
+ ++ SS S + LK Y +HK
Sbjct: 928 VKIET-----------------------SSKYSTVD----------TLKQQYRFLPAKHK 954
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
L + + T + F + L G+KA ++G + + R L KFK
Sbjct: 955 DCYLVYILSEMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFK 1014
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+G+ +L+ ++++RGLD+ D+V+N D+PT+S Y HR GRT R GR G +S+ +
Sbjct: 1015 SGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQY 1074
Query: 521 EVFVVKKMQK 530
E+ +++K
Sbjct: 1075 ELEWYVQIEK 1084
>gi|194433859|ref|ZP_03066133.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
gi|416283788|ref|ZP_11646958.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
gi|194417962|gb|EDX34057.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
gi|320180214|gb|EFW55149.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase [Flavobacterium johnsoniae UW101]
gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
UW101]
Length = 415
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 198/424 (46%), Gaps = 66/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L + + + EG+ PT +Q +IP +L D++ + TG+GKT A+ +PI+ +
Sbjct: 3 FEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GG 229
+ + G S K I A+IV P+REL +QI + S + QL GG
Sbjct: 63 LHRIV-------GSSKKAKQIRALIVTPTRELAVQIGQSFDTY---SKYTNLTQLTIFGG 112
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+++ Q +AL KN ++V TPGR+ ++ G L + LVLDE D++L F +
Sbjct: 113 VSQNPQVDAL-KNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVK 171
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+IV+ PK+ RQT++ SAT+P ++ A + DP V+
Sbjct: 172 KIVKLT----------PKN-------RQTLLFSATMPLAIRELAEMFLQDPEKVEV---- 210
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P+S ++ N + Y V K + K + L R +
Sbjct: 211 --------------SPVSSTAENVE--------------QRVYFVDKTE-KRNLLYRLIK 241
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ V+ F + V L + + A +HGD + AR L FKN EV VLV
Sbjct: 242 EENLSNVLVFSRTKHGADNVVKALRKKNIPAEAIHGDKSQNARQRVLDAFKNKEVGVLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVVK 526
+++ARG+D+ + V+N DLP Y HR GRTGR G G +S C EEP +K
Sbjct: 302 TDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDEEPYWKDIK 361
Query: 527 KMQK 530
K+ K
Sbjct: 362 KLIK 365
>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
Length = 576
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 195/419 (46%), Gaps = 61/419 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL LL LE G+ PT +Q AIP +L+ D++ Q+ TG+GKT A+ LP+L +
Sbjct: 21 FAALGLEASLLTTLEALGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQR 80
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + A+++ P+REL +Q+ +++ G + V L GG
Sbjct: 81 IA------------HGPRQRPTALVLVPTRELAVQVSEAVQRY-GKELRIGVLALYGGQA 127
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q +ALR+ ++V TPGR + L + +VLDE DE+L F + + I
Sbjct: 128 MGPQLQALRRGV-EVIVATPGRALDHLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAI 186
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+E P A +QT + SAT+P + AR
Sbjct: 187 LEQ-------TP----------AGKQTALFSATMPPRIASIARR---------------- 213
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+L P+ + + ++A A P ++ V QHKV L R +
Sbjct: 214 ---------HLKNPVDVTIAREPVKAGAA-----PRVQQTAYVVARQHKVSALARVLDIA 259
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
++ + F ++ + L RG +A +HG + ++ R ++ F++G+ +LV +
Sbjct: 260 TPKSALVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELLVATD 319
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARGLD+ V+N DLP+ Y HR GRTGR GR G ++I E E +++ +++
Sbjct: 320 VAARGLDIPSVSHVINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLRAVEQ 378
>gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
subflava NJ9703]
gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
subflava NJ9703]
Length = 463
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 195/412 (47%), Gaps = 57/412 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP L
Sbjct: 2 NPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ S+ S + +++ P+REL QI + ++ + + L GG
Sbjct: 62 ERLKRYATSST-----SPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTV-LFGG 115
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N +Q LR IVV T GR+ + ++ + +VLDE D +L F + +
Sbjct: 116 VNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIR 174
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ + PK +RQT++ SAT + + A+ + H P +V+
Sbjct: 175 KIMQML----------PK-------QRQTLLFSATFSPPIRKLAQDFMHTPEMVEVA--- 214
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ +++N+N++ +H V L+ K + L R +
Sbjct: 215 -----------------AQNTTNANVE------------QHIIAVDALK-KRNLLERLIV 244
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L VI F + + L R + A +HGD + +R TL FK G +RVLV
Sbjct: 245 DLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVA 304
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N +LPT Y HR GRTGR G G +S+ ++ E
Sbjct: 305 TDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTE 356
>gi|432542778|ref|ZP_19779629.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE236]
gi|432548253|ref|ZP_19785037.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE237]
gi|432621527|ref|ZP_19857565.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE76]
gi|432814966|ref|ZP_20048755.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE115]
gi|431075533|gb|ELD83053.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE236]
gi|431083022|gb|ELD89333.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE237]
gi|431160719|gb|ELE61221.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE76]
gi|431365912|gb|ELG52416.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE115]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|419866424|ref|ZP_14388784.1| ATP-dependent RNA helicase DbpA [Escherichia coli O103:H25 str.
CVM9340]
gi|388335004|gb|EIL01581.1| ATP-dependent RNA helicase DbpA [Escherichia coli O103:H25 str.
CVM9340]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|432754189|ref|ZP_19988742.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE22]
gi|431304187|gb|ELF92721.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE22]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDYVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|432749798|ref|ZP_19984409.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE29]
gi|431298350|gb|ELF87983.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE29]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|419191199|ref|ZP_13734665.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC7E]
gi|378041262|gb|EHW03725.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC7E]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|390945021|ref|YP_006408782.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418449|gb|AFL86027.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 406
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 131/424 (30%), Positives = 203/424 (47%), Gaps = 70/424 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F L L +L+ L EG+ PT +Q AIP +L+ D++ + TG+GKT A+ +PI+
Sbjct: 2 AFKNLNLIEPILKALVNEGYTTPTPIQQKAIPLVLEQRDLLGCAQTGTGKTAAFSIPIIQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K ++ I+A+I+ P+REL +QI I +D K + GG
Sbjct: 62 LLALQKQ----------RRPGIKALILTPTRELAIQIDESIAAYGKFTDIKHT-VIFGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
++ Q AL++ I+V TPGR+ ++ + +F VLDE D +L F + +
Sbjct: 111 SQLHQTNALKRGVD-ILVATPGRLLDLINQKFIDLRQLQFFVLDEADRMLDMGFIHDVKK 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + A+RQT+ SAT+P + + A +P V+ V P
Sbjct: 170 IIA-----------------LLPAKRQTLFFSATMPPEIQKLADVLLRNPSKVE---VTP 209
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S + DQ L YY +K D + H
Sbjct: 210 PSST----------------------VDKIDQRL------YYT-----NKNDKPKLLQHL 236
Query: 411 LDA---QTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
LDA +T + F T+ D V K AR G++AA +HG+ + AR LK FK G+++V
Sbjct: 237 LDAYRIRTALVF-TRTKHGADKVVKFLARDGVRAAAIHGNKSQNARQNALKDFKAGKLQV 295
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+D+ E V+N DLP S Y HR GRTGR G G +SIC+E + +K
Sbjct: 296 LVATDIAARGIDIDELAHVINYDLPNVSETYVHRIGRTGRAGNTGIAISICDEEQRKELK 355
Query: 527 KMQK 530
++K
Sbjct: 356 DIEK 359
>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 450
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 202/424 (47%), Gaps = 60/424 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF++L L P +L+ L G+ PT +Q+ AIP L+ HD++ + TG+GKT A+ LP+L
Sbjct: 5 SFVDLKLAPPILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFALPMLQ 64
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ P S+ S K + A+I+ P+REL +Q+ +K ++ +++ + GG
Sbjct: 65 KLLPHASAST-----SPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLV-VYGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q L K I+V TPGR+ + + + + LVLDE D +L F A+ R
Sbjct: 119 DIKTQTPHL-KTGVEILVATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKR 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + R +RQ++M SAT + + + + + P L++
Sbjct: 178 ILALLPR-----------------QRQSLMFSATFSNEIKKLSEDFMNYPTLIEV----- 215
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ SN A+ Q K Y +H++ L + +
Sbjct: 216 --------------------ARSNASAENITQ------KVYLVEQSGKHQL--LAQLLRG 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
DA+ VI F +L+ G+ A +HGD +L R L FK G V VL+
Sbjct: 248 DDAKQVIVFTKTKLTASRLAKQLQREGVSADAIHGDKSQLERMQALDAFKQGRVAVLIAT 307
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVVKK 527
+++ARGLD+ +V+N ++P + Y HR GRTGR G GT +S+ EE + ++K
Sbjct: 308 DVAARGLDIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLVSPEEEKYLLEIEK 367
Query: 528 MQKQ 531
+ K+
Sbjct: 368 LIKK 371
>gi|163750898|ref|ZP_02158131.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
gi|161329322|gb|EDQ00319.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
Length = 458
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 199/422 (47%), Gaps = 64/422 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF L L P L++ L+ G++ T +Q+ ++P+IL DV+ Q TGSGKT A+ L +L+
Sbjct: 2 SFSTLTLKPELIDNLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLN 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ K+ I+++++ P+REL Q+ +EI+ L V L GG
Sbjct: 62 KLDV-------------KRFCIQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGV 108
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +L ++ I+VGTPGRI + + L+ LVLDE D +L F +
Sbjct: 109 PMGPQIGSL-EHGAHIIVGTPGRIIDHLSRELLNLENVNTLVLDEADRMLEMGFLPDLDY 167
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + R ERQT++ SAT P + + A +P++V+
Sbjct: 168 IMAEMPR-----------------ERQTLLFSATFPKQIQKVAEQIMFEPVMVK------ 204
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
++ SS + +++ P AL+ + LQH+ D+
Sbjct: 205 -----------VASTHDSSSIEQHFYQIDSNKDRPKALR----LLLLQHRPDS------- 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F N R+ K+ L + G LHGDL + R TL +F N ++V
Sbjct: 243 -----AVVFCNTKRETKEVAATLASDGFSVVALHGDLEQRDRDITLMQFANKSASIMVAT 297
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ D+V+N +L D+ + HR GRTGR G +G ++ + + +K +++
Sbjct: 298 DVAARGLDIEALDMVINYELAFDTEVHIHRIGRTGRAGSKGMALTFYTYDDDYKIKLLEE 357
Query: 531 QL 532
L
Sbjct: 358 YL 359
>gi|293409738|ref|ZP_06653314.1| conserved hypothetical protein [Escherichia coli B354]
gi|291470206|gb|EFF12690.1| conserved hypothetical protein [Escherichia coli B354]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|255034351|ref|YP_003084972.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254947107|gb|ACT91807.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 411
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 192/418 (45%), Gaps = 60/418 (14%)
Query: 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184
LE GF PT++Q AIP+++K DV+ + TG+GKT A+ +P++ K+ K SS G
Sbjct: 16 LEAAGFKKPTDIQFKAIPAVMKGEDVLAIAQTGTGKTAAFAIPVIDKLHKQK-SSSRSEG 74
Query: 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKP 244
I+ V++ P+REL +QI E+ + K + GG + Q L K
Sbjct: 75 -------IKCVVMVPTRELAIQIA-EVFSSISRYTKVKTFSVFGGVEQGPQIAKLEKG-I 125
Query: 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
I+V TPGR+ ++ + G + L+LDE D +L F + + ++ H+ +R
Sbjct: 126 DILVSTPGRMFDLVSQGHIRLDRVDTLILDEADHMLDLGFIKDIQDLIRHLPKR------ 179
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSG 364
RQT+ SAT+ + + A S +N I ++ P
Sbjct: 180 -----------RQTLFFSATIDEKIKKLAYSL--------VRNAIRIQISP--------- 211
Query: 365 PMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
N AK D H + K L R + + ++ F+
Sbjct: 212 --------KNPVAKNID--------HSVAFVAMDDKRFFLERVIRQNADKKILVFVRTKV 255
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
+ + LE +K+ +HGD + R T + +FK G V++L+ ++SARG+D+ D
Sbjct: 256 RAERVFNALERMEIKSLTIHGDKQQSDRLTAMNEFKKGNVKILIATDVSARGIDIPNVDY 315
Query: 485 VVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFT 542
V+N DLP Y HR GRTGR ++G VS C E E ++ ++Q+ L PI + T
Sbjct: 316 VINYDLPEQPESYVHRVGRTGRGMQKGIAVSFCSEEEKPLLDEIQQYLDKPIAVVKLT 373
>gi|399031606|ref|ZP_10731509.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
gi|398070024|gb|EJL61343.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
Length = 640
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 206/441 (46%), Gaps = 74/441 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPI 168
N F +LGL LL+ + GF P+EVQ AIP +L K+ D+V + TG+GKT A+ P+
Sbjct: 2 NKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPL 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ K+ + +A++++P+REL +QI E+K V + G
Sbjct: 62 IQKI-------------DADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ + Q +++ I+V TPGR+ ++ G ++ + +LDE DE+L+ F E +
Sbjct: 109 GASITEQAREIKRG-AQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ P ++ T + SAT+P V R A+ + DP+ +
Sbjct: 168 VSILSDT----------PD-------QKSTWLFSATMPQEVARIAKQFMSDPVEI----- 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
G N SGS++ + H + + + + + L+R
Sbjct: 206 -------TVGTKN-----SGSAT----------------VSHEFYLVNARDRYEALKRLA 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A + F R + KL G AA LHGDL + R +K F+ ++++LV
Sbjct: 238 DANPDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV------ 522
+++ARG+DV VVN LP + Y HR+GRTGR G+ GT + I + E+
Sbjct: 298 ATDVAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSI 357
Query: 523 -FVVKKMQKQLAVP--IQACE 540
++K+ ++ +P I+ CE
Sbjct: 358 ERIIKQKFEEKTIPSGIEICE 378
>gi|386619053|ref|YP_006138633.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|432421615|ref|ZP_19664165.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE178]
gi|432558546|ref|ZP_19795226.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE49]
gi|432710375|ref|ZP_19945439.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE6]
gi|333969554|gb|AEG36359.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|430945869|gb|ELC65935.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE178]
gi|431092548|gb|ELD98244.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE49]
gi|431250944|gb|ELF45003.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE6]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNGLGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|417084221|ref|ZP_11952005.1| ATP-dependent RNA helicase DbpA [Escherichia coli cloneA_i1]
gi|355352269|gb|EHG01453.1| ATP-dependent RNA helicase DbpA [Escherichia coli cloneA_i1]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|255713670|ref|XP_002553117.1| KLTH0D09328p [Lachancea thermotolerans]
gi|238934497|emb|CAR22679.1| KLTH0D09328p [Lachancea thermotolerans CBS 6340]
Length = 551
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 187/416 (44%), Gaps = 60/416 (14%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P +F E G P +L ++ EGF PT +Q P L D++ + TGSGKTL+Y
Sbjct: 107 PKPITTFDEAGFPEYVLSEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYC 166
Query: 166 LPILSKVG--PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223
LP + + PL S G+G +++AP+REL +QI E K G S +
Sbjct: 167 LPGIVHINAQPL---LSPGDGPI-------VLVLAPTRELAVQIQTECSK-FGKSSRIRN 215
Query: 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283
+ GG R Q L + IV+ TPGR+ ++ GK + +LVLDE D +L
Sbjct: 216 TCVYGGVPRGHQIRELTRGA-EIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMG 274
Query: 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
F + +IV+ + R +RQT+M SAT P V + AR + HDP+ V
Sbjct: 275 FEPQIRKIVDQI-----------------RPDRQTLMWSATWPKEVQQLARDYLHDPIQV 317
Query: 344 QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT 403
NV LE + + +S L LKH
Sbjct: 318 ---NVGSLELAASHNIAQIVEVVSDMEKRDRL------------LKH------------- 349
Query: 404 LRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE 463
L D++ +I F + R + L G A +HGD + R L++F+ G
Sbjct: 350 LETASEDKDSKILI-FASTKRTCDEITRYLRQDGWPALAIHGDKAQNERDWVLQEFRTGN 408
Query: 464 VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
++V +++ARG+DV + V+N D+P + Y HR GRTGR G GT +S E
Sbjct: 409 SPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE 464
>gi|422294259|gb|EKU21559.1| dead deah box rna [Nannochloropsis gaditana CCMP526]
Length = 737
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 209/447 (46%), Gaps = 59/447 (13%)
Query: 89 DGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNH 148
D K K+ E+A N+ + RLE G +QS + IL
Sbjct: 121 DSAKKTKKCKTQASETADADPNALSNFKISQATRTRLEARGIKSLFPIQSMTLQKILDGC 180
Query: 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208
D++ ++ TG GKTLA+ LP++ +G ++ E G + +++AP+REL Q+
Sbjct: 181 DLIGRARTGCGKTLAFALPVVELIGDERE-------ERGAPPKV--LVLAPTRELAKQVA 231
Query: 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268
E + P+ ++V + GGA QEEALR+ +VVGTPGRI + G L G
Sbjct: 232 DEFEAC-APATLRSVC-IYGGAPYRPQEEALRRGV-QVVVGTPGRILDHIERGTLKLSGL 288
Query: 269 RFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS 328
RFL+LDE D +L F++ + ++ + +G+ S RQ ++ SAT+P
Sbjct: 289 RFLILDEADSMLDMGFKDDIQKVCDAMGQDS-------------HQRRQVLLFSATLPPW 335
Query: 329 VIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPAL 388
V + A+ + LVQ V ++ +T +++ P S S+P +
Sbjct: 336 VQKVAQQYMRKDKLVQVDLVQGEDAKASTDVRHVAIPCHWS-------------SMPSTV 382
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLG 448
V +K T+ C + ++ + V K E A LHGD+
Sbjct: 383 ADCLAVYGGSNKARTIVFCETKKECNELVV---------NPVIKTE-----CAALHGDIP 428
Query: 449 KLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP------TDSIHYAHRAG 502
+ R TTLK F+ G VRVLV +++ARGLD+ DLVV P TD Y HR+G
Sbjct: 429 QAQRETTLKAFREGRVRVLVATDVAARGLDMT-VDLVVQNKPPVTASGRTDVETYVHRSG 487
Query: 503 RTGRLGRRGTVVSICEEPEVFVVKKMQ 529
RTGR GR+G V++ F VK+++
Sbjct: 488 RTGRAGRKGICVTLFSPKYRFAVKEIE 514
>gi|416794102|ref|ZP_11882939.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
493-89]
gi|416805750|ref|ZP_11887794.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
2687]
gi|419075292|ref|ZP_13620829.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3F]
gi|420280009|ref|ZP_14782264.1| ATP-independent RNA helicase dbpA [Escherichia coli TW06591]
gi|425266800|ref|ZP_18658545.1| ATP-independent RNA helicase dbpA [Escherichia coli 5412]
gi|209771328|gb|ACI83976.1| ATP-dependent RNA helicase [Escherichia coli]
gi|320642613|gb|EFX11861.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
493-89]
gi|320647966|gb|EFX16674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
2687]
gi|377924692|gb|EHU88638.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3F]
gi|390783634|gb|EIO51232.1| ATP-independent RNA helicase dbpA [Escherichia coli TW06591]
gi|408185965|gb|EKI12087.1| ATP-independent RNA helicase dbpA [Escherichia coli 5412]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|432601863|ref|ZP_19838110.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE66]
gi|432874873|ref|ZP_20093737.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE147]
gi|431142797|gb|ELE44545.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE66]
gi|431403232|gb|ELG86514.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE147]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGLQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|303313405|ref|XP_003066714.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106376|gb|EER24569.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 805
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 129/432 (29%), Positives = 200/432 (46%), Gaps = 63/432 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A SF EL L L+ L F T++QS A+P +K D++ + TGSGKTLA+L+P+
Sbjct: 47 AESFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPV 106
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L + + +G G A+I++P+REL +QI ++K+ G + ++G
Sbjct: 107 LENLYRKQWTEYDGLG---------ALILSPTRELAIQIFEVLRKI-GRYHTFSAGLVIG 156
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
G +S QEE R + I+V TPGR+ + + T + LVLDE D ++ F+
Sbjct: 157 G--KSLQEEQERLGRMNILVCTPGRMLQHMDQTAAFDTDHIQMLVLDEADRIMDMGFQST 214
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ IVEH+ PK ERQT++ SAT Q K
Sbjct: 215 VDAIVEHL----------PK-------ERQTMLFSAT-------------------QTKK 238
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
V L + P +S + SS+ P +L+ +Y VT L K+DTL
Sbjct: 239 VSDLARLSLRDPEYISVHEAASSAT------------PASLQQHYVVTPLPEKLDTLWSF 286
Query: 408 VHALDAQTVIAFMNNTRQLK--DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ ++ F ++++Q++ F+ G+ LHG + AR KF +
Sbjct: 287 IRNTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAKYS 346
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
L + +++ARGLD D V+ LD P D+ Y HR GRT R R G V + E +
Sbjct: 347 CLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEEGM 406
Query: 526 KKMQKQLAVPIQ 537
K +Q +PI+
Sbjct: 407 LKRLEQKKIPIE 418
>gi|15801822|ref|NP_287840.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EDL933]
gi|15831181|ref|NP_309954.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
Sakai]
gi|168749013|ref|ZP_02774035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4113]
gi|168756028|ref|ZP_02781035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4401]
gi|168769429|ref|ZP_02794436.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4486]
gi|168775172|ref|ZP_02800179.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4196]
gi|168782877|ref|ZP_02807884.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4076]
gi|168788327|ref|ZP_02813334.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC869]
gi|168799657|ref|ZP_02824664.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC508]
gi|208811167|ref|ZP_03253000.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4206]
gi|208815022|ref|ZP_03256201.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4045]
gi|208820345|ref|ZP_03260665.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4042]
gi|209399223|ref|YP_002270403.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4115]
gi|217329397|ref|ZP_03445477.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
TW14588]
gi|254792938|ref|YP_003077775.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
TW14359]
gi|261224337|ref|ZP_05938618.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O157:H7 str. FRIK2000]
gi|261257409|ref|ZP_05949942.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O157:H7 str. FRIK966]
gi|291282438|ref|YP_003499256.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
CB9615]
gi|331652393|ref|ZP_08353412.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
gi|387506544|ref|YP_006158800.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
RM12579]
gi|387882405|ref|YP_006312707.1| ATP-dependent RNA helicase DbpA [Escherichia coli Xuzhou21]
gi|416311270|ref|ZP_11656958.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
1044]
gi|416320676|ref|ZP_11663075.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC1212]
gi|416329082|ref|ZP_11668585.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
1125]
gi|416826127|ref|ZP_11897099.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
5905]
gi|419045123|ref|ZP_13592073.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3A]
gi|419050907|ref|ZP_13597792.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3B]
gi|419056927|ref|ZP_13603751.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3C]
gi|419062305|ref|ZP_13609052.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3D]
gi|419069199|ref|ZP_13614882.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3E]
gi|419080261|ref|ZP_13625727.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4A]
gi|419086052|ref|ZP_13631429.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4B]
gi|419092255|ref|ZP_13637552.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4C]
gi|419097999|ref|ZP_13643216.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4D]
gi|419103708|ref|ZP_13648855.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4E]
gi|419109237|ref|ZP_13654311.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4F]
gi|419114397|ref|ZP_13659425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5A]
gi|419125795|ref|ZP_13670686.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5C]
gi|419131264|ref|ZP_13676108.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5D]
gi|419136138|ref|ZP_13680939.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC5E]
gi|420269238|ref|ZP_14771620.1| ATP-independent RNA helicase dbpA [Escherichia coli PA22]
gi|420275009|ref|ZP_14777319.1| ATP-independent RNA helicase dbpA [Escherichia coli PA40]
gi|420286212|ref|ZP_14788415.1| ATP-independent RNA helicase dbpA [Escherichia coli TW10246]
gi|420294040|ref|ZP_14796155.1| ATP-independent RNA helicase dbpA [Escherichia coli TW11039]
gi|420297743|ref|ZP_14799812.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09109]
gi|420303823|ref|ZP_14805835.1| ATP-independent RNA helicase dbpA [Escherichia coli TW10119]
gi|420309322|ref|ZP_14811273.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1738]
gi|420314523|ref|ZP_14816412.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1734]
gi|421811956|ref|ZP_16247717.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0416]
gi|421818019|ref|ZP_16253547.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0821]
gi|421823677|ref|ZP_16259082.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK920]
gi|421830464|ref|ZP_16265771.1| ATP-independent RNA helicase dbpA [Escherichia coli PA7]
gi|423700334|ref|ZP_17674821.1| ATP-independent RNA helicase dbpA [Escherichia coli PA31]
gi|424077030|ref|ZP_17814167.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA505]
gi|424083378|ref|ZP_17820021.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA517]
gi|424089896|ref|ZP_17825977.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1996]
gi|424115170|ref|ZP_17849153.1| ATP-independent RNA helicase dbpA [Escherichia coli PA3]
gi|424121465|ref|ZP_17854960.1| ATP-independent RNA helicase dbpA [Escherichia coli PA5]
gi|424127650|ref|ZP_17860679.1| ATP-independent RNA helicase dbpA [Escherichia coli PA9]
gi|424146861|ref|ZP_17878393.1| ATP-independent RNA helicase dbpA [Escherichia coli PA15]
gi|424152864|ref|ZP_17883926.1| ATP-independent RNA helicase dbpA [Escherichia coli PA24]
gi|424226676|ref|ZP_17889419.1| ATP-independent RNA helicase dbpA [Escherichia coli PA25]
gi|424302914|ref|ZP_17895274.1| ATP-independent RNA helicase dbpA [Escherichia coli PA28]
gi|424442809|ref|ZP_17901045.1| ATP-independent RNA helicase dbpA [Escherichia coli PA32]
gi|424461700|ref|ZP_17912365.1| ATP-independent RNA helicase dbpA [Escherichia coli PA39]
gi|424474687|ref|ZP_17924158.1| ATP-independent RNA helicase dbpA [Escherichia coli PA42]
gi|424480526|ref|ZP_17929608.1| ATP-independent RNA helicase dbpA [Escherichia coli TW07945]
gi|424486657|ref|ZP_17935338.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09098]
gi|424492973|ref|ZP_17941001.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09195]
gi|424499910|ref|ZP_17946973.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4203]
gi|424506087|ref|ZP_17952648.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4196]
gi|424512418|ref|ZP_17958406.1| ATP-independent RNA helicase dbpA [Escherichia coli TW14313]
gi|424519850|ref|ZP_17964105.1| ATP-independent RNA helicase dbpA [Escherichia coli TW14301]
gi|424525773|ref|ZP_17969609.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4421]
gi|424531948|ref|ZP_17975401.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4422]
gi|424537945|ref|ZP_17981011.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4013]
gi|424543874|ref|ZP_17986466.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4402]
gi|424550160|ref|ZP_17992162.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4439]
gi|424556400|ref|ZP_17997930.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4436]
gi|424562749|ref|ZP_18003858.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4437]
gi|424574952|ref|ZP_18015183.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1845]
gi|424580860|ref|ZP_18020627.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1863]
gi|425097584|ref|ZP_18500442.1| ATP-independent RNA helicase dbpA [Escherichia coli 3.4870]
gi|425103808|ref|ZP_18506231.1| ATP-independent RNA helicase dbpA [Escherichia coli 5.2239]
gi|425109626|ref|ZP_18511680.1| ATP-independent RNA helicase dbpA [Escherichia coli 6.0172]
gi|425125419|ref|ZP_18526757.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0586]
gi|425131364|ref|ZP_18532303.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.2524]
gi|425137722|ref|ZP_18538248.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0833]
gi|425149735|ref|ZP_18549459.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.0221]
gi|425155552|ref|ZP_18554930.1| ATP-independent RNA helicase dbpA [Escherichia coli PA34]
gi|425162008|ref|ZP_18561017.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA506]
gi|425167653|ref|ZP_18566274.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA507]
gi|425179733|ref|ZP_18577590.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1999]
gi|425192796|ref|ZP_18589713.1| ATP-independent RNA helicase dbpA [Escherichia coli NE1487]
gi|425199195|ref|ZP_18595589.1| ATP-independent RNA helicase dbpA [Escherichia coli NE037]
gi|425205702|ref|ZP_18601644.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK2001]
gi|425211393|ref|ZP_18606943.1| ATP-independent RNA helicase dbpA [Escherichia coli PA4]
gi|425217498|ref|ZP_18612623.1| ATP-independent RNA helicase dbpA [Escherichia coli PA23]
gi|425224058|ref|ZP_18618702.1| ATP-independent RNA helicase dbpA [Escherichia coli PA49]
gi|425230256|ref|ZP_18624461.1| ATP-independent RNA helicase dbpA [Escherichia coli PA45]
gi|425236415|ref|ZP_18630238.1| ATP-independent RNA helicase dbpA [Escherichia coli TT12B]
gi|425242536|ref|ZP_18635974.1| ATP-independent RNA helicase dbpA [Escherichia coli MA6]
gi|425248559|ref|ZP_18641600.1| ATP-independent RNA helicase dbpA [Escherichia coli 5905]
gi|425254471|ref|ZP_18647123.1| ATP-independent RNA helicase dbpA [Escherichia coli CB7326]
gi|425294269|ref|ZP_18684620.1| ATP-independent RNA helicase dbpA [Escherichia coli PA38]
gi|425329154|ref|ZP_18717177.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1846]
gi|425335325|ref|ZP_18722861.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1847]
gi|425353832|ref|ZP_18740033.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1850]
gi|425359808|ref|ZP_18745597.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1856]
gi|425365941|ref|ZP_18751288.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1862]
gi|425385197|ref|ZP_18768891.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1866]
gi|425391895|ref|ZP_18775156.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1868]
gi|425398013|ref|ZP_18780860.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1869]
gi|425404021|ref|ZP_18786425.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1870]
gi|425410572|ref|ZP_18792495.1| ATP-independent RNA helicase dbpA [Escherichia coli NE098]
gi|425416855|ref|ZP_18798277.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK523]
gi|425428097|ref|ZP_18808888.1| ATP-independent RNA helicase dbpA [Escherichia coli 0.1304]
gi|428952748|ref|ZP_19024675.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.1042]
gi|428958583|ref|ZP_19030060.1| ATP-independent RNA helicase dbpA [Escherichia coli 89.0511]
gi|428965096|ref|ZP_19036037.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.0091]
gi|428970905|ref|ZP_19041377.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.0039]
gi|428977460|ref|ZP_19047429.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.2281]
gi|428983254|ref|ZP_19052787.1| ATP-independent RNA helicase dbpA [Escherichia coli 93.0055]
gi|428989595|ref|ZP_19058680.1| ATP-independent RNA helicase dbpA [Escherichia coli 93.0056]
gi|428995308|ref|ZP_19064045.1| ATP-independent RNA helicase dbpA [Escherichia coli 94.0618]
gi|429001495|ref|ZP_19069801.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.0183]
gi|429007658|ref|ZP_19075340.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.1288]
gi|429014121|ref|ZP_19081160.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.0943]
gi|429020139|ref|ZP_19086759.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0428]
gi|429026005|ref|ZP_19092184.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0427]
gi|429032174|ref|ZP_19097837.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0939]
gi|429038299|ref|ZP_19103553.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0932]
gi|429044322|ref|ZP_19109145.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0107]
gi|429049842|ref|ZP_19114461.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0003]
gi|429055128|ref|ZP_19119549.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.1742]
gi|429060823|ref|ZP_19124902.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0007]
gi|429066771|ref|ZP_19130382.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0672]
gi|429072886|ref|ZP_19136191.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0678]
gi|429078225|ref|ZP_19141399.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0713]
gi|429825918|ref|ZP_19357146.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0109]
gi|429832210|ref|ZP_19362780.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0010]
gi|432453887|ref|ZP_19696116.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE193]
gi|433032955|ref|ZP_20220713.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE112]
gi|444924444|ref|ZP_21243919.1| ATP-independent RNA helicase dbpA [Escherichia coli 09BKT078844]
gi|444930417|ref|ZP_21249518.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0814]
gi|444935685|ref|ZP_21254550.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0815]
gi|444941334|ref|ZP_21259922.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0816]
gi|444946822|ref|ZP_21265190.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0839]
gi|444952510|ref|ZP_21270668.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0848]
gi|444957986|ref|ZP_21275910.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1753]
gi|444963251|ref|ZP_21280933.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1775]
gi|444969037|ref|ZP_21286460.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1793]
gi|444974435|ref|ZP_21291641.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1805]
gi|444979934|ref|ZP_21296889.1| ATP-independent RNA helicase dbpA [Escherichia coli ATCC 700728]
gi|444985235|ref|ZP_21302059.1| ATP-independent RNA helicase dbpA [Escherichia coli PA11]
gi|444990531|ref|ZP_21307225.1| ATP-independent RNA helicase dbpA [Escherichia coli PA19]
gi|444995773|ref|ZP_21312323.1| ATP-independent RNA helicase dbpA [Escherichia coli PA13]
gi|445001400|ref|ZP_21317826.1| ATP-independent RNA helicase dbpA [Escherichia coli PA2]
gi|445006824|ref|ZP_21323120.1| ATP-independent RNA helicase dbpA [Escherichia coli PA47]
gi|445017718|ref|ZP_21333723.1| ATP-independent RNA helicase dbpA [Escherichia coli PA8]
gi|445023307|ref|ZP_21339181.1| ATP-independent RNA helicase dbpA [Escherichia coli 7.1982]
gi|445028544|ref|ZP_21344273.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1781]
gi|445034021|ref|ZP_21349595.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1762]
gi|445039688|ref|ZP_21355110.1| ATP-independent RNA helicase dbpA [Escherichia coli PA35]
gi|445044884|ref|ZP_21360184.1| ATP-independent RNA helicase dbpA [Escherichia coli 3.4880]
gi|445056219|ref|ZP_21371122.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0670]
gi|452967900|ref|ZP_21966127.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4009]
gi|12515409|gb|AAG56454.1|AE005371_10 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
gi|13361392|dbj|BAB35350.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
gi|187769343|gb|EDU33187.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4196]
gi|188016533|gb|EDU54655.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4113]
gi|188999660|gb|EDU68646.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4076]
gi|189356796|gb|EDU75215.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4401]
gi|189361561|gb|EDU79980.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4486]
gi|189371812|gb|EDU90228.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC869]
gi|189377976|gb|EDU96392.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC508]
gi|208724673|gb|EDZ74381.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4206]
gi|208731670|gb|EDZ80358.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4045]
gi|208740468|gb|EDZ88150.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4042]
gi|209160623|gb|ACI38056.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4115]
gi|209771330|gb|ACI83977.1| ATP-dependent RNA helicase [Escherichia coli]
gi|209771332|gb|ACI83978.1| ATP-dependent RNA helicase [Escherichia coli]
gi|209771334|gb|ACI83979.1| ATP-dependent RNA helicase [Escherichia coli]
gi|209771336|gb|ACI83980.1| ATP-dependent RNA helicase [Escherichia coli]
gi|217317836|gb|EEC26264.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
TW14588]
gi|254592338|gb|ACT71699.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O157:H7 str. TW14359]
gi|290762311|gb|ADD56272.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
CB9615]
gi|320189895|gb|EFW64547.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC1212]
gi|320659158|gb|EFX26750.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
5905]
gi|326340988|gb|EGD64781.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
1125]
gi|326343226|gb|EGD66993.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
1044]
gi|331050671|gb|EGI22729.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
gi|374358538|gb|AEZ40245.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
RM12579]
gi|377896241|gb|EHU60642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3A]
gi|377896325|gb|EHU60723.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3B]
gi|377907924|gb|EHU72146.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3C]
gi|377913036|gb|EHU77181.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3D]
gi|377915651|gb|EHU79759.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC3E]
gi|377930079|gb|EHU93966.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4A]
gi|377934831|gb|EHU98657.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4B]
gi|377945338|gb|EHV09035.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4C]
gi|377945623|gb|EHV09314.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4D]
gi|377950954|gb|EHV14574.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4E]
gi|377959891|gb|EHV23383.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC4F]
gi|377963553|gb|EHV26997.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5A]
gi|377976756|gb|EHV40058.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5C]
gi|377977630|gb|EHV40914.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC5D]
gi|377985326|gb|EHV48538.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC5E]
gi|386795863|gb|AFJ28897.1| ATP-dependent RNA helicase DbpA [Escherichia coli Xuzhou21]
gi|390646765|gb|EIN25767.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1996]
gi|390647227|gb|EIN26142.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA517]
gi|390647677|gb|EIN26526.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA505]
gi|390684286|gb|EIN59911.1| ATP-independent RNA helicase dbpA [Escherichia coli PA3]
gi|390686496|gb|EIN61848.1| ATP-independent RNA helicase dbpA [Escherichia coli PA5]
gi|390687218|gb|EIN62506.1| ATP-independent RNA helicase dbpA [Escherichia coli PA9]
gi|390704769|gb|EIN78599.1| ATP-independent RNA helicase dbpA [Escherichia coli PA15]
gi|390716606|gb|EIN89403.1| ATP-independent RNA helicase dbpA [Escherichia coli PA22]
gi|390728528|gb|EIO00823.1| ATP-independent RNA helicase dbpA [Escherichia coli PA25]
gi|390728931|gb|EIO01178.1| ATP-independent RNA helicase dbpA [Escherichia coli PA24]
gi|390730978|gb|EIO02922.1| ATP-independent RNA helicase dbpA [Escherichia coli PA28]
gi|390747086|gb|EIO17672.1| ATP-independent RNA helicase dbpA [Escherichia coli PA31]
gi|390747892|gb|EIO18435.1| ATP-independent RNA helicase dbpA [Escherichia coli PA32]
gi|390759938|gb|EIO29296.1| ATP-independent RNA helicase dbpA [Escherichia coli PA40]
gi|390772990|gb|EIO41468.1| ATP-independent RNA helicase dbpA [Escherichia coli PA42]
gi|390773597|gb|EIO41961.1| ATP-independent RNA helicase dbpA [Escherichia coli PA39]
gi|390791858|gb|EIO59221.1| ATP-independent RNA helicase dbpA [Escherichia coli TW10246]
gi|390795654|gb|EIO62938.1| ATP-independent RNA helicase dbpA [Escherichia coli TW11039]
gi|390798782|gb|EIO65970.1| ATP-independent RNA helicase dbpA [Escherichia coli TW07945]
gi|390809230|gb|EIO76032.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09109]
gi|390813159|gb|EIO79802.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09098]
gi|390817424|gb|EIO83860.1| ATP-independent RNA helicase dbpA [Escherichia coli TW10119]
gi|390832004|gb|EIO97329.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4203]
gi|390834396|gb|EIO99356.1| ATP-independent RNA helicase dbpA [Escherichia coli TW09195]
gi|390835526|gb|EIP00286.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4196]
gi|390851644|gb|EIP14907.1| ATP-independent RNA helicase dbpA [Escherichia coli TW14301]
gi|390852839|gb|EIP15974.1| ATP-independent RNA helicase dbpA [Escherichia coli TW14313]
gi|390853637|gb|EIP16620.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4421]
gi|390866027|gb|EIP28011.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4422]
gi|390869656|gb|EIP31286.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4013]
gi|390877026|gb|EIP37978.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4402]
gi|390882237|gb|EIP42780.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4439]
gi|390886773|gb|EIP46854.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4436]
gi|390899628|gb|EIP58866.1| ATP-independent RNA helicase dbpA [Escherichia coli EC4437]
gi|390901964|gb|EIP61107.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1738]
gi|390909806|gb|EIP68570.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1734]
gi|390921909|gb|EIP80028.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1863]
gi|390923183|gb|EIP81153.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1845]
gi|408068708|gb|EKH03124.1| ATP-independent RNA helicase dbpA [Escherichia coli PA7]
gi|408072260|gb|EKH06582.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK920]
gi|408079896|gb|EKH13998.1| ATP-independent RNA helicase dbpA [Escherichia coli PA34]
gi|408084049|gb|EKH17836.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA506]
gi|408086523|gb|EKH20048.1| ATP-independent RNA helicase dbpA [Escherichia coli FDA507]
gi|408102084|gb|EKH34501.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK1999]
gi|408113937|gb|EKH45517.1| ATP-independent RNA helicase dbpA [Escherichia coli NE1487]
gi|408121169|gb|EKH52132.1| ATP-independent RNA helicase dbpA [Escherichia coli NE037]
gi|408126629|gb|EKH57188.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK2001]
gi|408131941|gb|EKH61956.1| ATP-independent RNA helicase dbpA [Escherichia coli PA4]
gi|408144266|gb|EKH73507.1| ATP-independent RNA helicase dbpA [Escherichia coli PA23]
gi|408146275|gb|EKH75416.1| ATP-independent RNA helicase dbpA [Escherichia coli PA49]
gi|408149731|gb|EKH78397.1| ATP-independent RNA helicase dbpA [Escherichia coli PA45]
gi|408160488|gb|EKH88501.1| ATP-independent RNA helicase dbpA [Escherichia coli TT12B]
gi|408165331|gb|EKH93025.1| ATP-independent RNA helicase dbpA [Escherichia coli MA6]
gi|408167544|gb|EKH95055.1| ATP-independent RNA helicase dbpA [Escherichia coli 5905]
gi|408179089|gb|EKI05779.1| ATP-independent RNA helicase dbpA [Escherichia coli CB7326]
gi|408222615|gb|EKI46472.1| ATP-independent RNA helicase dbpA [Escherichia coli PA38]
gi|408251603|gb|EKI73332.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1846]
gi|408261531|gb|EKI82517.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1847]
gi|408279686|gb|EKI99286.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1850]
gi|408281339|gb|EKJ00757.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1856]
gi|408294529|gb|EKJ12921.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1862]
gi|408312348|gb|EKJ29193.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1868]
gi|408312576|gb|EKJ29406.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1866]
gi|408326513|gb|EKJ42321.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1869]
gi|408329886|gb|EKJ45274.1| ATP-independent RNA helicase dbpA [Escherichia coli NE098]
gi|408330753|gb|EKJ46015.1| ATP-independent RNA helicase dbpA [Escherichia coli EC1870]
gi|408343032|gb|EKJ57444.1| ATP-independent RNA helicase dbpA [Escherichia coli FRIK523]
gi|408350050|gb|EKJ63954.1| ATP-independent RNA helicase dbpA [Escherichia coli 0.1304]
gi|408553717|gb|EKK30794.1| ATP-independent RNA helicase dbpA [Escherichia coli 5.2239]
gi|408554487|gb|EKK31419.1| ATP-independent RNA helicase dbpA [Escherichia coli 6.0172]
gi|408554596|gb|EKK31524.1| ATP-independent RNA helicase dbpA [Escherichia coli 3.4870]
gi|408576958|gb|EKK52542.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0586]
gi|408584041|gb|EKK59080.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.2524]
gi|408584293|gb|EKK59328.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0833]
gi|408600934|gb|EKK74756.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.0221]
gi|408603200|gb|EKK76862.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0416]
gi|408614992|gb|EKK88232.1| ATP-independent RNA helicase dbpA [Escherichia coli 10.0821]
gi|427210097|gb|EKV80043.1| ATP-independent RNA helicase dbpA [Escherichia coli 88.1042]
gi|427211514|gb|EKV81261.1| ATP-independent RNA helicase dbpA [Escherichia coli 89.0511]
gi|427228969|gb|EKV97335.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.2281]
gi|427229406|gb|EKV97742.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.0091]
gi|427230478|gb|EKV98643.1| ATP-independent RNA helicase dbpA [Escherichia coli 90.0039]
gi|427246531|gb|EKW13738.1| ATP-independent RNA helicase dbpA [Escherichia coli 93.0056]
gi|427247805|gb|EKW14855.1| ATP-independent RNA helicase dbpA [Escherichia coli 93.0055]
gi|427248968|gb|EKW15853.1| ATP-independent RNA helicase dbpA [Escherichia coli 94.0618]
gi|427265601|gb|EKW31148.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.0943]
gi|427265978|gb|EKW31482.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.0183]
gi|427267839|gb|EKW33045.1| ATP-independent RNA helicase dbpA [Escherichia coli 95.1288]
gi|427280858|gb|EKW45199.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0428]
gi|427284888|gb|EKW48898.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0427]
gi|427286912|gb|EKW50735.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0939]
gi|427297260|gb|EKW60298.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0932]
gi|427302621|gb|EKW65405.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0003]
gi|427303805|gb|EKW66508.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0107]
gi|427317205|gb|EKW79113.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.1742]
gi|427318804|gb|EKW80659.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0007]
gi|427324573|gb|EKW86043.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0672]
gi|427331340|gb|EKW92573.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0678]
gi|427331421|gb|EKW92652.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0713]
gi|429256517|gb|EKY40686.1| ATP-independent RNA helicase dbpA [Escherichia coli 96.0109]
gi|429258092|gb|EKY42004.1| ATP-independent RNA helicase dbpA [Escherichia coli 97.0010]
gi|430971952|gb|ELC88951.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE193]
gi|431557479|gb|ELI31190.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE112]
gi|444540806|gb|ELV20437.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0814]
gi|444544507|gb|ELV23562.1| ATP-independent RNA helicase dbpA [Escherichia coli 09BKT078844]
gi|444549750|gb|ELV27975.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0815]
gi|444560910|gb|ELV38043.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0839]
gi|444562948|gb|ELV39985.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0816]
gi|444567420|gb|ELV44185.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0848]
gi|444577289|gb|ELV53428.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1753]
gi|444580904|gb|ELV56789.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1775]
gi|444582865|gb|ELV58631.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1793]
gi|444596627|gb|ELV71680.1| ATP-independent RNA helicase dbpA [Escherichia coli PA11]
gi|444596903|gb|ELV71949.1| ATP-independent RNA helicase dbpA [Escherichia coli ATCC 700728]
gi|444600642|gb|ELV75470.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1805]
gi|444610484|gb|ELV84893.1| ATP-independent RNA helicase dbpA [Escherichia coli PA13]
gi|444610669|gb|ELV85076.1| ATP-independent RNA helicase dbpA [Escherichia coli PA19]
gi|444618497|gb|ELV92575.1| ATP-independent RNA helicase dbpA [Escherichia coli PA2]
gi|444628091|gb|ELW01836.1| ATP-independent RNA helicase dbpA [Escherichia coli PA47]
gi|444633252|gb|ELW06792.1| ATP-independent RNA helicase dbpA [Escherichia coli PA8]
gi|444642861|gb|ELW16033.1| ATP-independent RNA helicase dbpA [Escherichia coli 7.1982]
gi|444645726|gb|ELW18783.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1781]
gi|444648681|gb|ELW21598.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.1762]
gi|444658033|gb|ELW30496.1| ATP-independent RNA helicase dbpA [Escherichia coli PA35]
gi|444663841|gb|ELW36050.1| ATP-independent RNA helicase dbpA [Escherichia coli 3.4880]
gi|444671904|gb|ELW43670.1| ATP-independent RNA helicase dbpA [Escherichia coli 99.0670]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|427393209|ref|ZP_18887112.1| hypothetical protein HMPREF9698_00918 [Alloiococcus otitis ATCC
51267]
gi|425730791|gb|EKU93623.1| hypothetical protein HMPREF9698_00918 [Alloiococcus otitis ATCC
51267]
Length = 482
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 200/427 (46%), Gaps = 65/427 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+FL+L L P L++ L ++G++ PT +Q IP +L+ DV+ Q+ TG+GKT AY LP+L
Sbjct: 2 NFLDLQLSPDLVKALSKKGYSQPTRIQVQTIPLLLEGKDVIGQAQTGTGKTAAYALPLLD 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ P + + +A+I+ P+REL Q+ EI G + GG
Sbjct: 62 LLDPDQARP-------------QALILTPTRELASQVKGEIDSF-GYFKSLKCLAIFGGV 107
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q +AL++ I+V TPGR+ ++ GK+ T G LVLDE D+++ F E +
Sbjct: 108 SIKDQIKALKQGS-QILVATPGRLLDLLQRGKVDTSGVTRLVLDEADQMMDMGFIEDIKE 166
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ ++G +QT + SAT+P D +L AK+ IP
Sbjct: 167 ILSYLGML-----------------QQTALFSATLP------------DEVLTIAKDFIP 197
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
N GS S A+ ++ K K L +
Sbjct: 198 ----------NYHQVSLGSKSQP-----------AQAVSQFFTKVKDSEKFQVLHAFLQV 236
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
LD + + F+ +++ + V L+ + LH D + R + + K G+ ++LV
Sbjct: 237 LDPKAALIFVRTKKRVDEMVQALQQMTYQVEGLHSDFSQKQRLAVMHRLKTGQSKLLVAT 296
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+L+ARGLD+ V N D P D+ Y HR GRTGR G +G ++ E E +KK++K
Sbjct: 297 DLAARGLDIDHISHVFNFDAPQDAESYTHRIGRTGRAGSQGMAITFFEPKEHGYLKKLEK 356
Query: 531 QLAVPIQ 537
++ +Q
Sbjct: 357 EIGHKLQ 363
>gi|417233555|ref|ZP_12034319.1| ATP-independent RNA helicase DbpA [Escherichia coli 5.0959]
gi|386203821|gb|EII08339.1| ATP-independent RNA helicase DbpA [Escherichia coli 5.0959]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|91210637|ref|YP_540623.1| ATP-dependent RNA helicase DbpA [Escherichia coli UTI89]
gi|117623595|ref|YP_852508.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O1]
gi|218558330|ref|YP_002391243.1| ATP-dependent RNA helicase DbpA [Escherichia coli S88]
gi|237705373|ref|ZP_04535854.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
gi|386599245|ref|YP_006100751.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
gi|386604599|ref|YP_006110899.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
gi|419700241|ref|ZP_14227849.1| ATP-dependent RNA helicase DbpA [Escherichia coli SCI-07]
gi|419945827|ref|ZP_14462257.1| ATP-dependent RNA helicase DbpA [Escherichia coli HM605]
gi|422752237|ref|ZP_16806140.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|422754774|ref|ZP_16808599.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|422838632|ref|ZP_16886605.1| ATP-independent RNA helicase dbpA [Escherichia coli H397]
gi|432357787|ref|ZP_19601017.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE4]
gi|432362409|ref|ZP_19605582.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE5]
gi|432573467|ref|ZP_19809952.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE55]
gi|432587708|ref|ZP_19824065.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE58]
gi|432597434|ref|ZP_19833711.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE62]
gi|432778321|ref|ZP_20012566.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE59]
gi|432787265|ref|ZP_20021400.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE65]
gi|432820690|ref|ZP_20054393.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE118]
gi|432826846|ref|ZP_20060500.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE123]
gi|433004896|ref|ZP_20193329.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE227]
gi|433007397|ref|ZP_20195817.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE229]
gi|433153492|ref|ZP_20338453.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE176]
gi|433163189|ref|ZP_20347943.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE179]
gi|433168247|ref|ZP_20352901.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE180]
gi|91072211|gb|ABE07092.1| ATP-independent RNA helicase DbpA [Escherichia coli UTI89]
gi|115512719|gb|ABJ00794.1| ATP-independent RNA helicase DbpA [Escherichia coli APEC O1]
gi|218365099|emb|CAR02806.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
S88]
gi|226900130|gb|EEH86389.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
gi|294490917|gb|ADE89673.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
gi|307627083|gb|ADN71387.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
gi|323949054|gb|EGB44946.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|323956904|gb|EGB52636.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|371613198|gb|EHO01698.1| ATP-independent RNA helicase dbpA [Escherichia coli H397]
gi|380348599|gb|EIA36879.1| ATP-dependent RNA helicase DbpA [Escherichia coli SCI-07]
gi|388414500|gb|EIL74456.1| ATP-dependent RNA helicase DbpA [Escherichia coli HM605]
gi|430878421|gb|ELC01849.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE4]
gi|430887701|gb|ELC10442.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE5]
gi|431109467|gb|ELE13425.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE55]
gi|431121434|gb|ELE24329.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE58]
gi|431131558|gb|ELE33578.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE62]
gi|431327713|gb|ELG15034.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE59]
gi|431338900|gb|ELG25971.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE65]
gi|431369830|gb|ELG56051.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE118]
gi|431373970|gb|ELG59573.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE123]
gi|431515884|gb|ELH93699.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE227]
gi|431524629|gb|ELI01570.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE229]
gi|431676475|gb|ELJ42594.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE176]
gi|431690390|gb|ELJ55873.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE179]
gi|431691073|gb|ELJ56535.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE180]
Length = 457
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|209885134|ref|YP_002288991.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
gi|337741239|ref|YP_004632967.1| DEAD-box ATP-dependent RNA helicase CshA [Oligotropha
carboxidovorans OM5]
gi|386030255|ref|YP_005951030.1| DEAD/DEAH box helicase [Oligotropha carboxidovorans OM4]
gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
carboxidovorans OM5]
gi|336095323|gb|AEI03149.1| DEAD-box ATP-dependent RNA helicase CshA [Oligotropha
carboxidovorans OM4]
gi|336098903|gb|AEI06726.1| DEAD-box ATP-dependent RNA helicase CshA [Oligotropha
carboxidovorans OM5]
Length = 469
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 199/427 (46%), Gaps = 68/427 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSHLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q+ I K + L+G
Sbjct: 62 ML------------EKGRARARMPRTLILEPTRELAAQVQENIDHYCA-GQKLNIALLIG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q+ L + I++ TPGR+ + + GKL G LV+DE D +L F +
Sbjct: 109 GMSFGDQDAKLMRGVD-ILIATPGRLLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI + V P + RQT+ +AT+P + R ++ H+P V+
Sbjct: 168 ERICKLV----------PFT-------RQTLFFTATMPPEIRRITETFLHNPEKVEI--- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S PA+ ++ G S+++ K + LR+ +
Sbjct: 208 ----SRPASTATTVTQSQIGIGSDAHA------------------------KRELLRQLL 239
Query: 409 H-ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
A D + I F N R + L+ G AA LHGD+ + AR T L +F+ GE+ +L
Sbjct: 240 RDAKDLKNAIIFCNRKRDVAILHKSLQKHGFGAAALHGDMDQSARMTALDQFRKGELPLL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI---CEEPEVFV 524
V ++++ARGLD+ E V N D+P Y HR GRTGR GR GT +SI ++ +
Sbjct: 300 VASDVAARGLDIPEVSHVFNFDVPYHPDDYVHRIGRTGRAGRLGTAISIVSPTDQKSILA 359
Query: 525 VKKMQKQ 531
++K+ Q
Sbjct: 360 IEKLIGQ 366
>gi|82544201|ref|YP_408148.1| ATP-dependent RNA helicase DbpA [Shigella boydii Sb227]
gi|416271297|ref|ZP_11642916.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
gi|417126242|ref|ZP_11973967.1| ATP-independent RNA helicase DbpA [Escherichia coli 97.0246]
gi|417682235|ref|ZP_12331593.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
gi|420352287|ref|ZP_14853437.1| ATP-independent RNA helicase dbpA [Shigella boydii 4444-74]
gi|421682099|ref|ZP_16121918.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri 1485-80]
gi|81245612|gb|ABB66320.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
gi|320174309|gb|EFW49464.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
gi|332094952|gb|EGI99992.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
gi|386145286|gb|EIG91746.1| ATP-independent RNA helicase DbpA [Escherichia coli 97.0246]
gi|391283805|gb|EIQ42416.1| ATP-independent RNA helicase dbpA [Shigella boydii 4444-74]
gi|404341058|gb|EJZ67471.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
flexneri 1485-80]
Length = 457
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|366159225|ref|ZP_09459087.1| ATP-dependent RNA helicase DbpA [Escherichia sp. TW09308]
gi|432372383|ref|ZP_19615428.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE11]
gi|430896876|gb|ELC19103.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE11]
Length = 457
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG S Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFSIQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDTLNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++
Sbjct: 175 ----------------PASRQTLLFSATWPDAIAAISGRVQRDPLAIEIDT--------- 209
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 210 ------------------------SDALPPIEQQFY-ETSSKGKISLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLALVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|269123479|ref|YP_003306056.1| DEAD/DEAH box helicase [Streptobacillus moniliformis DSM 12112]
gi|268314805|gb|ACZ01179.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
DSM 12112]
Length = 543
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 190/408 (46%), Gaps = 67/408 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVI-QSYTGSGKTLAYLLPIL 169
+F + L +LE LE++ F P+E+Q+ IP +LK +I Q+ TG+GKT A+ +PIL
Sbjct: 2 NFKDYNLSNEMLEALEKKRFVSPSEIQALVIPELLKEETHLIGQAQTGTGKTAAFSIPIL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
K+ P K ++A+I+AP+REL Q+ EI L G + K + + GG
Sbjct: 62 EKIIPTKK--------------VKALILAPTRELANQVSDEIYSLKGKKEVK-ILAVYGG 106
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A+ Q + L+K IVVGTPGR+ ++ G L + + VLDE DE+L+ F E +
Sbjct: 107 ASIENQIKNLKKG-VDIVVGTPGRVIDMINKGALKLNELEYFVLDEADEMLNMGFIEDIE 165
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+E +++ + SAT+P P+L AK +
Sbjct: 166 LILEKTNE-----------------DKKMLFFSATIP------------KPILAIAKRFM 196
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P + L+ ++ + Y + + K + L R +
Sbjct: 197 PEHKILKVQKKELTTHLT---------------------EQIYFEVRREDKFEALCRVLD 235
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F ++ + KL+AR A +HGD+ + R L FKN + +LV
Sbjct: 236 YKPDFYGIVFCRTKSEVDEVTNKLKARNYDAEAIHGDITQGLREKALDLFKNKILNILVA 295
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARG+DV+ V+N +P +S Y HR GRTGR G +G ++
Sbjct: 296 TDVAARGIDVSNLTHVINYSIPQESDSYVHRIGRTGRAGNKGIAITFV 343
>gi|307255928|ref|ZP_07537729.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307260381|ref|ZP_07542088.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306861196|gb|EFM93189.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865632|gb|EFM97513.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 445
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 186/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY L+HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNLEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|383645365|ref|ZP_09957771.1| putative helicase [Sphingomonas elodea ATCC 31461]
Length = 478
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 187/391 (47%), Gaps = 60/391 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL LL + G+ PT +Q AIPS+L D++ + TG+GKT A++LP++
Sbjct: 2 SFADLGLSDELLRAVTDAGYTEPTPIQRQAIPSVLMGKDLIGIAQTGTGKTAAFVLPMID 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+G + ++ ++I+ P+REL Q+ +K G + K ++ L+GG
Sbjct: 62 VLGEGRTRALMPR----------SLILEPTRELAAQVAENFEKY-GLNHKLSMALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q +AL K +++ TPGR+ ++ GK+ GC LV+DE D +L F +
Sbjct: 111 QMGDQVKALEKGV-DVLIATPGRLMDLYGRGKILLTGCSLLVIDEADRMLDMGFIPDIEE 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + PK+ RQT++ SAT+P + + A + DP ++
Sbjct: 170 ICTKL----------PKN-------RQTLLFSATMPPPIKKLADKFLTDPKTIEV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ PAT +N N+ + PA H K D LRR +
Sbjct: 208 --ARPAT-------------TNVNITQRIVQV---PATAHV--------KRDVLRRLLQQ 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ T I F N ++D L+ G ++AE+HGD+ + AR L +FKNG+V +LV +
Sbjct: 242 DEVSTAIIFCNRKTTVRDLNKSLKKHGFRSAEIHGDMDQSARIAELDRFKNGDVNILVAS 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501
+++ARGLDV V N D P Y HR
Sbjct: 302 DVAARGLDVKGVSHVFNFDAPWHPDDYVHRI 332
>gi|388581211|gb|EIM21521.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 929
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 203/438 (46%), Gaps = 43/438 (9%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPI 168
SF +GL P LL L GFN PT +Q AIP IL D+V + TGSGKTLAYL+P+
Sbjct: 90 SFQSMGLNPSLLRSLFLRGFNQPTPIQRLAIPPILSTPPRDLVGMARTGSGKTLAYLIPL 149
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR-------EIKKLLGPSDKK 221
+ K+G + + ++I+ PSREL +QI+R KK +G ++
Sbjct: 150 VQKLG----------AQHSIRFGARSLILVPSRELALQILRVGKELVKGYKKEMGEGQEE 199
Query: 222 AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLS 281
++ G + +L + P +++ TPGR+ ++ L ++V DE D L
Sbjct: 200 MRWSVIVGGESLDDQFSLIASNPDVIIATPGRLLHLAVEMNLDLKSVEYVVFDEADRLFE 259
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
F+ ++ ++ R P + RQT++ SAT+P S++ A++ DP
Sbjct: 260 MGFQLQLNELIS----------RLPTT-------RQTLLFSATLPKSLVEFAKAGLVDPK 302
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ-SLPPALKHYYCVTKLQHK 400
LV+ + ES + + S +S L A D +PP + + K
Sbjct: 303 LVR----LDAESKISEDLETAFFSVKPSDKDSALLALIKDVIKVPPGFQEAQDTSSKNDK 358
Query: 401 VDTLRRCV--HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
+R L I F ++ L+A G A ++G L + AR + +
Sbjct: 359 EKKRKRTALPSFLKPYQTIIFTATKHHVEYLNTLLKAAGYAVAHVYGSLDQTARQLQMDQ 418
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
F+ G +LV +++ARG+D+ C+ V+N D PT + + HR GRT R GR+GT S
Sbjct: 419 FRRGVSSILVVTDVAARGIDLPGCENVINYDFPTGARIFIHRVGRTARAGRKGTAWSFIT 478
Query: 519 EPEVFVVKKMQKQLAVPI 536
E+ + + LA P+
Sbjct: 479 NSELPYLLDLSLFLARPL 496
>gi|322515347|ref|ZP_08068343.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
gi|322118634|gb|EFX90856.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
Length = 445
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 186/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 N---LLDYPRRKLGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY L+HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNLEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + I F+ +++ L RG+++ L GD+ + R+ + + K+G V VLV
Sbjct: 250 MKMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRVGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|416782816|ref|ZP_11878023.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
G5101]
gi|425260700|ref|ZP_18652870.1| ATP-independent RNA helicase dbpA [Escherichia coli EC96038]
gi|445011961|ref|ZP_21328112.1| ATP-independent RNA helicase dbpA [Escherichia coli PA48]
gi|320637247|gb|EFX07073.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
G5101]
gi|408185502|gb|EKI11678.1| ATP-independent RNA helicase dbpA [Escherichia coli EC96038]
gi|444627915|gb|ELW01661.1| ATP-independent RNA helicase dbpA [Escherichia coli PA48]
Length = 457
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L + T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELDYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP ++ +C T + K+ L+R + +
Sbjct: 211 -------------------------DALPP-IEQQFCETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|429743607|ref|ZP_19277153.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
gi|429164947|gb|EKY07038.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
Length = 444
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 193/423 (45%), Gaps = 62/423 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L L G+ PT +Q+ A+P L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FSDLHLDKNILSALTSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ DK G A+++ P+REL Q+ + +VGGA+
Sbjct: 65 LTRRSDKPGKGP---------RALVLTPTRELAAQVEKNALNYAKNMKWFRTVSIVGGAS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLMDLMNSGKVDFDRLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IV A P+E RQT++ SAT +V + AR +P +++ + V
Sbjct: 174 IV-------AATPKE----------RQTLLFSATWDGAVGKLARKLTKNPEVIEIERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DEQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR GT ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGTAITFAEVNEYVKVHKIEK 363
Query: 531 QLA 533
+
Sbjct: 364 YIG 366
>gi|425304938|ref|ZP_18694691.1| ATP-independent RNA helicase dbpA [Escherichia coli N1]
gi|408230407|gb|EKI53806.1| ATP-independent RNA helicase dbpA [Escherichia coli N1]
Length = 457
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQCDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|425119493|ref|ZP_18521206.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0569]
gi|408571782|gb|EKK47710.1| ATP-independent RNA helicase dbpA [Escherichia coli 8.0569]
Length = 448
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
+PP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 1 MPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 56
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 57 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 107
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 108 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 165
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 166 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 201
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 202 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 235
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 236 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 295
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 296 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 340
>gi|74312285|ref|YP_310704.1| ATP-dependent RNA helicase DbpA [Shigella sonnei Ss046]
gi|383178646|ref|YP_005456651.1| ATP-dependent RNA helicase DbpA [Shigella sonnei 53G]
gi|414576197|ref|ZP_11433385.1| ATP-independent RNA helicase dbpA [Shigella sonnei 3233-85]
gi|415845196|ref|ZP_11524829.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
gi|418265833|ref|ZP_12885542.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella sonnei
str. Moseley]
gi|420358750|ref|ZP_14859729.1| ATP-independent RNA helicase dbpA [Shigella sonnei 3226-85]
gi|73855762|gb|AAZ88469.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
gi|323168225|gb|EFZ53911.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
gi|391283343|gb|EIQ41963.1| ATP-independent RNA helicase dbpA [Shigella sonnei 3226-85]
gi|391285749|gb|EIQ44321.1| ATP-independent RNA helicase dbpA [Shigella sonnei 3233-85]
gi|397900318|gb|EJL16679.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella sonnei
str. Moseley]
Length = 457
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|307246946|ref|ZP_07529011.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306852231|gb|EFM84471.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 449
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 186/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY L+HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNLEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
Length = 457
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 193/423 (45%), Gaps = 62/423 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++ P+REL Q+ + +VGGA+
Sbjct: 65 LTKRSEKPGKGP---------RALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGAS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P +RQT++ SAT +V + AR +P +++ + V
Sbjct: 174 IVE-------ATP----------TDRQTLLFSATWDGAVGKLARKLTKNPEIIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DNQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QLA 533
+A
Sbjct: 364 YIA 366
>gi|300926734|ref|ZP_07142509.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
gi|301326919|ref|ZP_07220211.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
gi|422958492|ref|ZP_16970423.1| ATP-independent RNA helicase dbpA [Escherichia coli H494]
gi|450213797|ref|ZP_21895071.1| ATP-dependent RNA helicase DbpA [Escherichia coli O08]
gi|300417310|gb|EFK00621.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
gi|300846390|gb|EFK74150.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
gi|371596321|gb|EHN85159.1| ATP-independent RNA helicase dbpA [Escherichia coli H494]
gi|449320451|gb|EMD10483.1| ATP-dependent RNA helicase DbpA [Escherichia coli O08]
Length = 457
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|160902412|ref|YP_001567993.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
SJ95]
gi|160360056|gb|ABX31670.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
Length = 530
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 108/407 (26%), Positives = 199/407 (48%), Gaps = 63/407 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVI-QSYTGSGKTLAYLLPILS 170
F ++GL +L ++R+G+ PT +Q IP +L + VI Q+ TG+GKT A+ +P++
Sbjct: 4 FQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPLIE 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ D+ +N D++A+++ P+REL +Q+ EI L G + + + + GG
Sbjct: 64 RL----DEKAN---------DVQALVLTPTRELALQVCNEIDSLKG-NKRLNLLPVYGGV 109
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q AL++ + +VVGTPGRI + G L ++LV+DE DE+L F E +
Sbjct: 110 SIGNQIRALKR-RVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEM 168
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + E+Q +M SAT+P ++ AR
Sbjct: 169 ILSKTNK-----------------EKQILMFSATMPQRIVTLARKH-------------- 197
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
M + + +Q + D ++ A + YY +++ +K++ L R +
Sbjct: 198 ---------------MGNFETVTTVQENKEDITVKKAKQIYYMISE-SNKIELLSRLIDI 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F Q ++ +L +G +A L+GD+ + R + +FK+ +++L++
Sbjct: 242 DTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKILIST 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+++ARG+D+ V+N LP + +Y HR GRT R G GT ++
Sbjct: 302 DVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFV 348
>gi|303317020|ref|XP_003068512.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108193|gb|EER26367.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 536
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 207/456 (45%), Gaps = 76/456 (16%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+SF LGL P L+ L PT +Q A IP ILK D + S TGSGKT+A+ PIL
Sbjct: 106 SSFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPIL 165
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ S I AV++ P+REL +QI + K + P K V L+ G
Sbjct: 166 HRW-------------SEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPV--LITG 210
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFNFR 285
+ R + +P +V+ TPGR+A+ I +G+ +G R +VLDE D LL+
Sbjct: 211 GSEMRPQAIALSTRPHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLLA---- 266
Query: 286 EAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
SG P SA+ RQT++ +ATV
Sbjct: 267 -------------SGPGSMLPDVETCLSAVPSSTSRQTLLFTATV--------------- 298
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
V L+SMP + L ++ S+ +N ++PP LK Y + H+
Sbjct: 299 ----TPEVRALKSMPRSK-DRLHIFVTEISTENN-------TTIPPTLKQCYLQVPMTHR 346
Query: 401 VDTLRRCVHALDAQT---VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLK 457
+ + + DA + I F N T+ L G + LH L + R++ L
Sbjct: 347 -EAFLHVLLSTDANSSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLA 405
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+F+ R+LV +++ARGLD+ LVVN D+P + Y HR GRT R GR G +++
Sbjct: 406 RFRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLV 465
Query: 518 EEPEVFVVKKMQKQLAVPIQACE----FTEGRLVIG 549
+ +V +V +++++ + A E EGR+V G
Sbjct: 466 GQRDVQLVLAIEERVGRQMVAWEEEGVSIEGRIVRG 501
>gi|399027814|ref|ZP_10729231.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
gi|398074604|gb|EJL65744.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
Length = 418
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 196/428 (45%), Gaps = 59/428 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L + + + EG+ PT +Q +IP +L D++ + TG+GKT A+ +PI+ +
Sbjct: 3 FEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPIVLSGKDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + G + K I A+IV P+REL +QI + + G + GG +
Sbjct: 63 LHRIV-------GSTKKAKQIRALIVTPTRELAVQIGQNFETY-GKYTNLTQLTIFGGVS 114
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
++ Q +AL+K I+V TPGR+ ++ G L LVLDE D++L F + +I
Sbjct: 115 QNPQVDALKKGVD-ILVATPGRLLDLQKQGFLDLDHLHTLVLDEADQMLDMGFVNDVKKI 173
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
V+ PK+ RQT++ SAT+P ++ A + DP V
Sbjct: 174 VKLT----------PKN-------RQTLLFSATMPIAIRELAEMFLTDPETVTV------ 210
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
P+S ++ N + D++ L ++ T+ + R H
Sbjct: 211 ------------SPVSSTAENVEQRVYFVDKTEKRNLLYHLIKTEELSNILVFSRTKHGA 258
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D + V L + A +HGD + AR L FKN EV VLV +
Sbjct: 259 D---------------NVVKALRKNNIAAEAIHGDKSQNARQRVLDAFKNKEVGVLVATD 303
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARG+D+ + V+N DLP Y HR GRTGR G G +S C + E+ K +QK
Sbjct: 304 IAARGIDIDQLPFVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCSKDELPYWKDIQKL 363
Query: 532 LAVPIQAC 539
+ V ++
Sbjct: 364 IKVDVKTI 371
>gi|307258113|ref|ZP_07539865.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306863476|gb|EFM95407.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 445
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 187/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY ++HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNVEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K+G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|421355237|ref|ZP_15805568.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-45]
gi|395949907|gb|EJH60526.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-45]
Length = 464
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 123/433 (28%), Positives = 198/433 (45%), Gaps = 64/433 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQLAVPIQACEF 541
+ L I F
Sbjct: 362 TQALLPRINLAGF 374
>gi|218694919|ref|YP_002402586.1| ATP-dependent RNA helicase DbpA [Escherichia coli 55989]
gi|407469079|ref|YP_006784479.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482258|ref|YP_006779407.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2011C-3493]
gi|410482810|ref|YP_006770356.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|417804869|ref|ZP_12451847.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
LB226692]
gi|417832603|ref|ZP_12479069.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
01-09591]
gi|422987333|ref|ZP_16978109.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
C227-11]
gi|422994214|ref|ZP_16984978.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
C236-11]
gi|422999405|ref|ZP_16990161.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
09-7901]
gi|423003006|ref|ZP_16993752.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
04-8351]
gi|423009526|ref|ZP_17000264.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-3677]
gi|423023720|ref|ZP_17014423.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4404]
gi|423028869|ref|ZP_17019562.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4522]
gi|423029736|ref|ZP_17020424.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4623]
gi|423037575|ref|ZP_17028249.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423042689|ref|ZP_17033356.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423049380|ref|ZP_17040037.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052961|ref|ZP_17041769.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059928|ref|ZP_17048724.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C5]
gi|429718785|ref|ZP_19253729.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429724123|ref|ZP_19258994.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429775743|ref|ZP_19307734.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02030]
gi|429777831|ref|ZP_19309800.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782075|ref|ZP_19314002.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02092]
gi|429788578|ref|ZP_19320458.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02093]
gi|429794008|ref|ZP_19325849.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02281]
gi|429797661|ref|ZP_19329465.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02318]
gi|429806081|ref|ZP_19337820.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02913]
gi|429810526|ref|ZP_19342227.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-03439]
gi|429814631|ref|ZP_19346300.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-04080]
gi|429819994|ref|ZP_19351619.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-03943]
gi|429912326|ref|ZP_19378282.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429913210|ref|ZP_19379160.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429918254|ref|ZP_19384189.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429924048|ref|ZP_19389964.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932942|ref|ZP_19398836.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429934546|ref|ZP_19400436.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429940208|ref|ZP_19406082.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429947843|ref|ZP_19413698.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429950482|ref|ZP_19416330.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429953781|ref|ZP_19419617.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432764691|ref|ZP_19999135.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE48]
gi|433091741|ref|ZP_20278027.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE138]
gi|218351651|emb|CAU97366.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
55989]
gi|340734719|gb|EGR63831.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
01-09591]
gi|340740486|gb|EGR74689.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
LB226692]
gi|354865289|gb|EHF25718.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
C236-11]
gi|354870291|gb|EHF30696.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
C227-11]
gi|354872082|gb|EHF32479.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
04-8351]
gi|354875582|gb|EHF35948.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
09-7901]
gi|354876129|gb|EHF36491.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4404]
gi|354881605|gb|EHF41934.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4522]
gi|354882058|gb|EHF42385.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-3677]
gi|354898017|gb|EHF58173.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354900112|gb|EHF60248.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4623]
gi|354902707|gb|EHF62824.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354904189|gb|EHF64283.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354914946|gb|EHF74927.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354920504|gb|EHF80438.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-4632 C4]
gi|406777972|gb|AFS57396.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407054555|gb|AFS74606.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2011C-3493]
gi|407065114|gb|AFS86161.1| ATP-dependent RNA helicase DbpA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|429349094|gb|EKY85849.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02030]
gi|429358166|gb|EKY94836.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02033-1]
gi|429359570|gb|EKY96235.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02092]
gi|429369314|gb|EKZ05895.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02093]
gi|429372024|gb|EKZ08574.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02281]
gi|429373974|gb|EKZ10514.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02318]
gi|429379699|gb|EKZ16198.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-02913]
gi|429384079|gb|EKZ20536.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-03439]
gi|429389368|gb|EKZ25789.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-03943]
gi|429395355|gb|EKZ31722.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429400600|gb|EKZ36915.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
11-04080]
gi|429405692|gb|EKZ41957.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429416215|gb|EKZ52372.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429416763|gb|EKZ52915.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417387|gb|EKZ53537.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422141|gb|EKZ58262.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429425953|gb|EKZ62042.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429438969|gb|EKZ74961.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429441786|gb|EKZ77754.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429448762|gb|EKZ84671.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429450650|gb|EKZ86544.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429453353|gb|EKZ89221.1| ATP-independent RNA helicase dbpA [Escherichia coli O104:H4 str.
Ec11-9941]
gi|431311777|gb|ELF99925.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE48]
gi|431612357|gb|ELI81605.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE138]
Length = 457
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|419924870|ref|ZP_14442739.1| ATP-dependent RNA helicase DbpA [Escherichia coli 541-15]
gi|388388603|gb|EIL50169.1| ATP-dependent RNA helicase DbpA [Escherichia coli 541-15]
Length = 457
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLHELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|294668347|ref|ZP_06733450.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309665|gb|EFE50908.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 399
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 191/414 (46%), Gaps = 61/414 (14%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL ++ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP L
Sbjct: 7 NPFSSLGLGQEIVSALTEQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSL 66
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ S+ S + +++ P+REL QI + ++ + + L GG
Sbjct: 67 ERLKRFATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTV-LFGG 120
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N +Q LR IVV T GR+ + ++ +VLDE D +L F + +
Sbjct: 121 VNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNINFSKVEIVVLDEADRMLDMGFIDDIR 179
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAKN 347
I+ + PK +RQT++ SAT + + AR + + P + V A+N
Sbjct: 180 TIMRML----------PK-------QRQTLLFSATFAEPIRKLARDFMNSPEQIEVAAQN 222
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
++N+N++ +H V Q K L R
Sbjct: 223 ----------------------TTNANVE------------QHVIAVDTFQ-KRRLLERL 247
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ LD VI F + + L+ R + A +HGD + R TL FK G +RVL
Sbjct: 248 IVDLDMNQVIVFCKTKQSVDQVTRDLQRREISAQAIHGDKSQQTRLETLSAFKEGNLRVL 307
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
V +++ARGLD+AE V+N ++PT Y HR GRTGR G G +S+ +E E
Sbjct: 308 VATDVAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDETE 361
>gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
Length = 464
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|422307647|ref|ZP_16394803.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|408619161|gb|EKK92199.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
Length = 464
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 123/433 (28%), Positives = 198/433 (45%), Gaps = 64/433 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQLAVPIQACEF 541
+ L I F
Sbjct: 362 TQALLPRINLAGF 374
>gi|91179150|gb|ABE27759.1| vasa [Azumapecten farreri]
Length = 801
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 192/419 (45%), Gaps = 60/419 (14%)
Query: 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAY 164
AP + SF E G+ + L + F PT VQ +IP ++ D++ + TGSGKT A+
Sbjct: 347 APASIKSFEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAF 406
Query: 165 LLPILSKVGPLKDKSSNGNGESGKK-TDI---EAVIVAPSRELGMQIVREIKKLLGPSDK 220
LLP+L+ G +K NG +G +D+ +A++VAP+REL +QI + +K +
Sbjct: 407 LLPVLT--GMMK------NGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTML 458
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280
+ V L GG + Q + + +N IVVGTPGR+ ++ GK+ ++L+LDE D +L
Sbjct: 459 RPV-VLYGGTSVGYQLKQV-ENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRML 516
Query: 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
F + +IV +G + ERQT+M SAT P + + A + +D
Sbjct: 517 DMGFGPDIKKIVHELG-------------TPEKTERQTLMFSATFPEEIQKLAGDFLNDY 563
Query: 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK 400
L + G + G+ S+ +H++ V + Q K
Sbjct: 564 LFLTV------------------GRVGGACSD--------------VTQHFFQVDR-QQK 590
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
L + A + F+ R L G +HGD + R L+ FK
Sbjct: 591 RQKLCDILSESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDFK 650
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
G+ +L+ ++ARGLD+ V+N DLP Y HR GRTGR G G S E
Sbjct: 651 QGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFFSE 709
>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
Length = 786
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 130/470 (27%), Positives = 218/470 (46%), Gaps = 68/470 (14%)
Query: 101 EIESAPFAANSFL---ELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTG 157
EIE++ A L +LGLPP L+E LE+ G +Q A + L+ D++ ++ TG
Sbjct: 104 EIEASAAAQEDELALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTG 163
Query: 158 SGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGP 217
+GKTLA+ +PI+ ++ D+ SG+ + +++AP+REL Q+ +EIK+
Sbjct: 164 TGKTLAFGIPIIKRLSE-DDEKRTSQRRSGRLPRV--LVLAPTRELAKQVEKEIKE---S 217
Query: 218 SDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID 277
+ + + GG + Q+ AL + +VVGTPGRI ++ L + LVLDE D
Sbjct: 218 APYLSTVCVYGGVSYITQQNALSRGVD-VVVGTPGRIIDLIKGNSLKLGEVQNLVLDEAD 276
Query: 278 ELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG 337
++L+ F E + I+E + +ERQ+++ SAT+P V + AR +
Sbjct: 277 QMLAVGFEEDVEVILEK-----------------LPSERQSMLFSATMPAWVKKLARKYL 319
Query: 338 HDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKL 397
+PL + N P + P N + D+ L +K Y T
Sbjct: 320 DNPLTIDLGNFCPHWGLNLEPPKNPPQTLD--------HVGDHDEKLAEGIKLYAIPTTA 371
Query: 398 QHKVDTLRRC-----------------VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKA 440
K L V+A +T++ T++ D V + +
Sbjct: 372 TSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIV--FTQTKRDADEVSMALTNSIAS 429
Query: 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL---------VVNLDLP 491
LHGD+ + R TL F+ G+ VLV +++ARGLD+ DL +++ +LP
Sbjct: 430 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLKYVDLLFLQIIHYELP 489
Query: 492 TDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEF 541
D + HR+GRTGR G+ GT + + + VK +++ + C+F
Sbjct: 490 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDV-----GCKF 534
>gi|422324449|ref|ZP_16405486.1| hypothetical protein HMPREF0737_00596 [Rothia mucilaginosa M508]
gi|353343971|gb|EHB88284.1| hypothetical protein HMPREF0737_00596 [Rothia mucilaginosa M508]
Length = 638
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 191/412 (46%), Gaps = 56/412 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A SF + G+ + + L G P +Q +P L D++ Q+ TG+GKTL + LP
Sbjct: 71 AKSFADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPT 130
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ +V + G + +A+I+ P+REL +Q+ ++ + V L G
Sbjct: 131 IQRV---VGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLA-IAAKLRNARVATLYG 186
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q E LR+ + VGTPGRI ++ G L+ + +VLDE DE+L F+ ++
Sbjct: 187 GVPIEPQAELLRRGL-EVAVGTPGRIIDLCQQGFLNLKQVKIVVLDEADEMLDLGFQPSV 245
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I+ + + +RQ+++ SAT+P VI AR + P+ + A +
Sbjct: 246 EKILSY-----------------LPEDRQSMLFSATMPGPVIAMARQYMTKPMRISAAD- 287
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH--KVDTLRR 406
P S + ++++ V + H K + + R
Sbjct: 288 ----------------PEDASKTKASIR---------------QVVYRAHHLDKDEMIGR 316
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R +L RG AA LHGDL ++AR LK F++G+V +
Sbjct: 317 ILRATGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRSGKVDI 376
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
LV +++ARG+DV + V+N +P D Y HR GRTGR G GT V++ +
Sbjct: 377 LVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVD 428
>gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
Length = 464
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|413950350|gb|AFW82999.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 778
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 191/424 (45%), Gaps = 60/424 (14%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
++ P SF G P +L+ ++R GF PT +Q+ + P ++N DVV + TGSGKTL
Sbjct: 138 DNVPAPITSFEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAMQNQDVVAIAKTGSGKTL 197
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
YLLP + L++ + NG +++AP+REL QI+ E K G S + +
Sbjct: 198 GYLLPGFMHIKRLQNSTRNGP---------TVLVLAPTRELATQILDEAMKF-GRSSRIS 247
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GGA + Q L + +VV TPGR+ +I ++ +LVLDE D +L
Sbjct: 248 CTCLYGGAPKGPQLRDLDRGV-DVVVATPGRLNDILEMRRVSLKQVSYLVLDEADRMLDM 306
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +IV+ + R RQT+M +AT P V R A PL
Sbjct: 307 GFEPQIRKIVKEIPHR-----------------RQTLMYTATWPKEVRRIADDLLVHPLQ 349
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V NV L +NS A+ + V K
Sbjct: 350 VTIGNVDEL------------------VANS-------------AITQHIEVITPSEKQR 378
Query: 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG 462
L + + + + + I T+++ D + + R A+ +HGD + R L F++G
Sbjct: 379 RLEQILRSQVSGSKILIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLNHFRSG 438
Query: 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-ICEEPE 521
+LV +++ARGLD+ + +V+N D PT Y HR GRTGR G G + C++
Sbjct: 439 RSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDS 498
Query: 522 VFVV 525
+
Sbjct: 499 KYAA 502
>gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
Length = 464
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|320036344|gb|EFW18283.1| ATP-dependent RNA helicase dbp4 [Coccidioides posadasii str.
Silveira]
Length = 805
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 129/432 (29%), Positives = 200/432 (46%), Gaps = 63/432 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A SF EL L L+ L F T++QS A+P +K D++ + TGSGKTLA+L+P+
Sbjct: 47 AESFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPV 106
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L + + +G G A+I++P+REL +QI ++K+ G + ++G
Sbjct: 107 LENLYRKQWTEYDGLG---------ALILSPTRELAIQIFEVLRKI-GRYHTFSAGLVIG 156
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
G +S QEE R + I+V TPGR+ + + T + LVLDE D ++ F+
Sbjct: 157 G--KSLQEEQERLGRMNILVCTPGRMLQHMDQTAAFDTDHIQMLVLDEADRIMDMGFQST 214
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ IVEH+ PK ERQT++ SAT Q K
Sbjct: 215 VDAIVEHL----------PK-------ERQTMLFSAT-------------------QTKK 238
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
V L + P +S + SS+ P +L+ +Y VT L K+DTL
Sbjct: 239 VSDLARLSLRDPEYISVHEAASSAT------------PASLQQHYVVTPLPEKLDTLWSF 286
Query: 408 VHALDAQTVIAFMNNTRQLK--DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ ++ F ++++Q++ F+ G+ LHG + AR KF +
Sbjct: 287 IRNTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAKYS 346
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
L + +++ARGLD D V+ LD P D+ Y HR GRT R R G V + E +
Sbjct: 347 CLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEEGM 406
Query: 526 KKMQKQLAVPIQ 537
K +Q +PI+
Sbjct: 407 LKRLEQKKIPIE 418
>gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
Length = 464
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|347529289|ref|YP_004836037.1| putative helicase [Sphingobium sp. SYK-6]
gi|345137971|dbj|BAK67580.1| putative helicase [Sphingobium sp. SYK-6]
Length = 472
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 201/426 (47%), Gaps = 62/426 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LGL LL+ +E G++ T +Q+ AIPS+L D++ + TG+GKT +++LP++
Sbjct: 3 FADLGLSEELLKAVEEAGYSEATPIQAQAIPSVLMMRDIIGIAQTGTGKTASFVLPMIDI 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G S + ++I+ P+REL Q+ +K G K ++ L+GG +
Sbjct: 63 LA---------QGRSRARMP-RSLILEPTRELAAQVAENFEKY-GKYHKLSMALLIGGVS 111
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q +AL K +++ TPGR+ ++ G + GC LV+DE D +L F + I
Sbjct: 112 MGDQVKALEKGV-DVLIATPGRLMDLFERGNILLTGCSLLVIDEADRMLDMGFIPDIENI 170
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ A RQT++ SAT+P + + A + +P ++
Sbjct: 171 CTK-----------------LPANRQTLLFSATMPGPIKKLADKFLTNPKSIEV------ 207
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ PAT N++ Q L P + + K + LR +
Sbjct: 208 -ARPATASANIA------------------QMLVP--------VEERGKREMLRTLLGKE 240
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D T I F N +++ L G K+ E+HGD+ + AR L++FK+GE+ +LV ++
Sbjct: 241 DVNTAIIFCNRKTMVRELNKSLRRHGFKSGEIHGDIDQSARIAELERFKSGEINLLVASD 300
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ V N D P Y HR GRTGR G G + + + ++ ++K
Sbjct: 301 VAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGATGKAFTFVTKNDAEAIEAIEKL 360
Query: 532 LAVPIQ 537
+ I+
Sbjct: 361 IGNKIE 366
>gi|32477297|ref|NP_870291.1| ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH 1]
gi|32447848|emb|CAD77366.1| putative ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH
1]
Length = 485
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 199/432 (46%), Gaps = 57/432 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F +LGL LL+ LE+ G+ PT +Q+ +IP IL +DV+ + TG+GKT A+ LPIL
Sbjct: 2 NKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPIL 61
Query: 170 SKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
+ + + S G + I ++++P+REL QI + + G + +
Sbjct: 62 QIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFR-IYGKKTRLRSTVI 120
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG N++ Q L+ +V TPGR+ ++ G + LVLDE D +L F
Sbjct: 121 FGGVNQNPQVRELQSGVDTLVA-TPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLP 179
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI++ + R +RQ ++ SAT+P + + A DP+ +Q
Sbjct: 180 DVKRILKFLPR-----------------DRQNLLFSATMPGPIRKLADEILVDPVTIQ-- 220
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ P + P S QAD+ P L +++ TK R
Sbjct: 221 -IAPQK------------PTVERIEQSICFVAQADK---PRLLNHFIETKATGSTLVFTR 264
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
H DA +L G+KAA +HG+ + R TL KFKN E+ V
Sbjct: 265 TKHGADA---------------VARRLVKAGVKAAAIHGNKTQANRVRTLNKFKNDELDV 309
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC--EEPEVFV 524
LV +++ARG+D+ V+N D P Y HR GRTGR GR G V C E + F+
Sbjct: 310 LVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFCGGHETKFFI 369
Query: 525 VKKMQKQLAVPI 536
+ + +L +P+
Sbjct: 370 AIEREIKLQIPV 381
>gi|326801270|ref|YP_004319089.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
gi|326552034|gb|ADZ80419.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
Length = 442
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 201/435 (46%), Gaps = 68/435 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF + +L + + PT +Q AI IL DV+ + TG+GKT AY+LPI+
Sbjct: 4 SFEDFKFNRQILNAIADAEYKEPTAIQQKAITPILAGQDVMGIAQTGTGKTAAYVLPIIM 63
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ K + G +D A+I++P+REL MQI I+ +D + V L GG
Sbjct: 64 KL-----KYAQG-------SDPRALILSPTRELAMQIEENIQLFAKYTDLRTVV-LYGGL 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+Q EAL K I+V TPGR ++ A ++T + LV+DE D+++ F +HR
Sbjct: 111 GPKQQIEALEKGVD-ILVATPGRFLDLYLAEHINTKQIKLLVMDEADKMMDMGFIGKIHR 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+E + R+ RQ ++ SAT+ V + A + P +V
Sbjct: 170 ILEVIPRK-----------------RQNLLFSATMSELVHKIAGDFLAFPTIV------- 205
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV-H 409
E P P N + Y V + K++ L+ + +
Sbjct: 206 -EVSPQATPANTVS------------------------QQLYFVPNTKTKINLLQYLLKN 240
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAE---LHGDLGKLARSTTLKKFKNGEVRV 466
D +I F + T+ + D ++ +R E +H + G+ R ++ FK G VR+
Sbjct: 241 DEDFHRLIIF-SKTKTIADNIYHFLSRKYGEDEVRVIHANKGQNTRINSINAFKEGSVRI 299
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLDV++ V+N D+P Y HR GRTGR + G +S+C E + +
Sbjct: 300 LVATDVAARGLDVSDVSHVINFDIPIVIEDYVHRIGRTGRATKSGIAISMCTPAEAYYIT 359
Query: 527 KMQKQLAVPIQACEF 541
K++K + I E
Sbjct: 360 KIEKLIRQQIPVSEL 374
>gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
gi|384422710|ref|YP_005632069.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3984-4]
gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3984-4]
Length = 464
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
Length = 540
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 125/427 (29%), Positives = 206/427 (48%), Gaps = 70/427 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ ++ +G+ P+ +Q+ AIP++L+ DV+ + TG+GKT + LPIL +
Sbjct: 3 FTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI---VREIKKLLGPSDKKAVQQLVG 228
+ G + + A+I+ P+REL Q+ V + L S AV + G
Sbjct: 63 L---------TGGPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSS--AV--VFG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q LRK ++V TPGR+ ++ + LVLDE D +L F +
Sbjct: 110 GVKINPQMLRLRKGA-DVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I+E + PK+ RQ ++ SAT + A+ +DP+ +
Sbjct: 169 RKILELL----------PKN-------RQNLLFSATFSDEIRALAKGLVNDPVEI----- 206
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S S +N AK +Q + PA ++ K L + +
Sbjct: 207 --------------------SVSPANSTAKTVEQCVYPA--------DVKKKAPMLVKLI 238
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ Q V+ F R L G+KAA +HG+ + AR+T L +FK+GE+RVLV
Sbjct: 239 KDGNWQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLV 298
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-IC--EEPEVFVV 525
+++ARG+D+ + VVN +LP + Y HR GRTGR G G +S +C E P++F +
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFGI 358
Query: 526 KKMQKQL 532
+++ +Q+
Sbjct: 359 ERLIQQV 365
>gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
gi|429888348|ref|ZP_19369831.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae PS15]
gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
gi|429224548|gb|EKY30912.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae PS15]
Length = 464
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|387889288|ref|YP_006319586.1| ATP-independent RNA helicase DbpA [Escherichia blattae DSM 4481]
gi|414593507|ref|ZP_11443151.1| ATP-independent RNA helicase DbpA [Escherichia blattae NBRC 105725]
gi|386924121|gb|AFJ47075.1| ATP-independent RNA helicase DbpA [Escherichia blattae DSM 4481]
gi|403195553|dbj|GAB80803.1| ATP-independent RNA helicase DbpA [Escherichia blattae NBRC 105725]
Length = 456
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP LL+ LE G++ T VQ+AA+P +L DV +Q+ TGSGKT A+ + +L K+
Sbjct: 10 LPAALLDNLESLGYSAMTPVQAAALPVVLAGKDVRVQAQTGSGKTAAFGVGLLPKI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
++G+ +A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 --------DAGQFA-TQALVLCPTRELADQVAGELRRLARFLPNIKILTLCGGQPFGPQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + + LVLDE D +L F EA++++++ V
Sbjct: 117 DSL-QHAPHIIVATPGRLVDHLQKGTVKLDALQTLVLDEADRMLDMGFSEAINQVLDSVP 175
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
R RQT++ SAT P + + DP ++ V
Sbjct: 176 PR-----------------RQTLLFSATWPEGIAAISARVQRDPQTIEIDRV-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LP + +Y V + + K+ L+ + +
Sbjct: 211 -------------------------DNLPAIEQQFYDVPR-RGKIALLQSLLSQHRPASC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + ++ L G +A LHGD+ + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTRKDCQEVCDALNDAGQEALALHGDMEQRDRDQTLVRFANGSTRVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ ++VVN +L D + HR GRT R G G VS C E
Sbjct: 305 LDIKALEMVVNYELAWDPEVHVHRIGRTARAGNSGLAVSFCAPEE 349
>gi|226287504|gb|EEH43017.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
Pb18]
Length = 486
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 192/394 (48%), Gaps = 52/394 (13%)
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
E F+ PT +QS + P + DV+ + TGSGKTLA+ +P + KV + NG+ S
Sbjct: 88 ENFSKPTSIQSVSWPFLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEI-----NGSRSSS 142
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+ I AVI+ P+REL QI ++ K + + + GGA++ Q AL+K ++V
Sbjct: 143 R---ISAVIITPTRELATQIYDQLIKF--TPNNVGIACIYGGASKDDQRRALKK--ASVV 195
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V T GR+ + L ++LVLDE D +L F + + IV+
Sbjct: 196 VATTGRLKDFQGDESLRLDKVKYLVLDEADRMLDKGFEQDIKDIVD-------------- 241
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
A+ +RQT+M +AT P SV + A ++ D + + G+LS
Sbjct: 242 -AMPSSKKRQTVMFTATWPISVRKLAATFMKDHVTITI--------------GDLS---- 282
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
S +N + KQ + L P K + ++ L +R +A+D V+ F ++
Sbjct: 283 -SDIRANTRIKQIVEVLKPEDKEHRLLSLLNQ----YQRGKNAMDK--VLVFCLYKKEAT 335
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
+ ++G K A +HGD+ + R +L FK+G V +LV +++ARGLD+ LV+N
Sbjct: 336 RIERLIRSKGFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLN 395
Query: 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+ P Y HR GRTGR G G +++ E +
Sbjct: 396 VTFPLTVEDYVHRIGRTGRAGADGLAITMFTEND 429
>gi|167754851|ref|ZP_02426978.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
gi|365829799|ref|ZP_09371390.1| hypothetical protein HMPREF1021_00154 [Coprobacillus sp. 3_3_56FAA]
gi|374626591|ref|ZP_09699003.1| hypothetical protein HMPREF0978_02323 [Coprobacillus sp.
8_2_54BFAA]
gi|167704901|gb|EDS19480.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|365264380|gb|EHM94189.1| hypothetical protein HMPREF1021_00154 [Coprobacillus sp. 3_3_56FAA]
gi|373914119|gb|EHQ45952.1| hypothetical protein HMPREF0978_02323 [Coprobacillus sp.
8_2_54BFAA]
Length = 436
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 199/419 (47%), Gaps = 59/419 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL L LL ++ +++P+ +Q AIP+I+ D+ + TG+GKT A+ LPIL K
Sbjct: 3 FSELELIEPLLNAVKEMKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQK 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ L+D+S E +T I+A+I+AP+REL +QI E + + P + GG
Sbjct: 63 LY-LRDES-----EKYPRT-IKALILAPTRELAIQI-NETFEAMNPQVNLKSAVIFGGVR 114
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + +++ TPGR+ ++ G + +LVLDE D +L F + + +I
Sbjct: 115 QGSQVTKINRG-IDVLIATPGRLIDLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKI 173
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + RR QT++ SAT+P + +DPL +
Sbjct: 174 LRFIPRR-----------------HQTMLFSATLPDEIKHLVSDLLNDPLKIMI------ 210
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S+ N+ ++ +QSL Y V K+ +K L + +
Sbjct: 211 -------------------SSGNVTVEKINQSL-------YFVDKV-NKAKLLIKLLENP 243
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
I F+ R + KL + +HGD + AR L FKN +VRVLV ++
Sbjct: 244 QIYNAIVFVRTKRNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASD 303
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARG+D+ E V+N DLP + +Y HR GRT R G G ++ C E ++K +QK
Sbjct: 304 IAARGIDIDELTHVINFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQK 362
>gi|440712534|ref|ZP_20893150.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SWK14]
gi|436442689|gb|ELP35800.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SWK14]
Length = 489
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 199/432 (46%), Gaps = 57/432 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F +LGL LL+ LE+ G+ PT +Q+ +IP IL +DV+ + TG+GKT A+ LPIL
Sbjct: 6 NKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPIL 65
Query: 170 SKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
+ + + S G + I ++++P+REL QI + + G + +
Sbjct: 66 QIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFR-IYGKKTRLRSTVI 124
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG N++ Q L+ +V TPGR+ ++ G + LVLDE D +L F
Sbjct: 125 FGGVNQNPQVRELQSGVDTLVA-TPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLP 183
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI++ + R +RQ ++ SAT+P + + A DP+ +Q
Sbjct: 184 DVKRILKFLPR-----------------DRQNLLFSATMPGPIRKLADEILVDPVTIQ-- 224
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ P + P S QAD+ P L +++ TK R
Sbjct: 225 -IAPQK------------PTVERIEQSICFVAQADK---PRLLNHFIETKATGSTLVFTR 268
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
H DA +L G+KAA +HG+ + R TL KFKN E+ V
Sbjct: 269 TKHGADA---------------VARRLVKAGVKAAAIHGNKTQANRVRTLNKFKNDELDV 313
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC--EEPEVFV 524
LV +++ARG+D+ V+N D P Y HR GRTGR GR G V C E + F+
Sbjct: 314 LVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFCGGHETKFFI 373
Query: 525 VKKMQKQLAVPI 536
+ + +L +P+
Sbjct: 374 AIEREIKLQIPV 385
>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
Length = 781
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 123/435 (28%), Positives = 203/435 (46%), Gaps = 57/435 (13%)
Query: 85 AVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSI 144
A+ D + V + SA +F EL L P + + + PT +Q AIP+I
Sbjct: 159 AINFDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAI 218
Query: 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI-EAVIVAPSREL 203
L++ D++ + TGSGKT A+L+PI++ + + N + KT + +I+AP+REL
Sbjct: 219 LEHRDIMACAQTGSGKTAAFLIPIINHL-----VCQDLNQQRYSKTAYPKCLILAPTREL 273
Query: 204 GMQIVREIKKL-LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK 262
+QI+ E +K L + V + GGA+ Q ++ ++V TPGR+ + K
Sbjct: 274 AIQILSESQKFSLNTPLRSCV--VYGGADTHSQIREVQM-GCHLLVATPGRLVDFIEKNK 330
Query: 263 LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVS 322
+ C+++VLDE D +L F + +I+E SG N RQT+M S
Sbjct: 331 ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN-------------RQTLMFS 377
Query: 323 ATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ 382
AT P + + A + ++ + + V GS+S+S
Sbjct: 378 ATFPKEIQKLAADFLYNYIFMTVGRV-------------------GSTSDS--------- 409
Query: 383 SLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAA 441
+K K++ L+ + T+I T++ D++ + L ++G +
Sbjct: 410 -----IKQEIIYMTDVEKLNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVS 464
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501
+HGD ++ R L F+NG+ +LV ++ARGLD+ V+N DLP+D Y HR
Sbjct: 465 SIHGDRSQVEREAALSMFRNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRI 524
Query: 502 GRTGRLGRRGTVVSI 516
GRTGRLG G S
Sbjct: 525 GRTGRLGNHGRATSF 539
>gi|390332079|ref|XP_781784.3| PREDICTED: probable ATP-dependent RNA helicase DDX49
[Strongylocentrotus purpuratus]
Length = 478
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 195/426 (45%), Gaps = 68/426 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + E G PT +Q IP ILK D + + TGSGKT A+ LPIL
Sbjct: 13 SFSGLGLHDWLVRQCEAVGIKQPTPIQHNCIPPILKGSDCIGCAKTGSGKTAAFALPILQ 72
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ S + G G ++V P+RELG+QI + + +LG V ++GG
Sbjct: 73 KL------SEDPYGVFG-------LVVTPTRELGIQIAEQFR-VLGKPIGLRVTVVIGGI 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ Q L K KP IV+ TPGR+A+ I + H +FLVLDE D LL NF +
Sbjct: 119 DMVEQGRELSK-KPHIVIATPGRLADHIKSTSTFDLHAIKFLVLDEADRLLEGNFGPDLE 177
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I + + A+RQT++ SAT+
Sbjct: 178 VIFDF-----------------LPAKRQTLLFSATIT----------------------- 197
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQS---LPPALKHYYCVTKLQHKVDTLRR 406
++M ++ P S S +Q DQ +P +K Y + + + R
Sbjct: 198 --DTMKELQKMSMDKPFSWHSKAPVATVEQLDQRYVLMPAQVKDAYLMYIISEFTEKNRD 255
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
++I F + + L GM+ A LH + + R +L FK+ VR+
Sbjct: 256 -------HSLIIFTSTCKYCHVLSIMLRNLGMQCATLHSLVKQKTRIASLAMFKSNHVRI 308
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +L++RGLD+ +++N ++PT Y HR GRT R GR G +++ + +V +V+
Sbjct: 309 LVATDLASRGLDIPMVQMIINHNVPTSPKDYIHRVGRTARAGRGGMSITMVTQFDVKLVQ 368
Query: 527 KMQKQL 532
++K +
Sbjct: 369 AIEKTI 374
>gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
Length = 463
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 195/412 (47%), Gaps = 57/412 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP L
Sbjct: 2 NPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ S+ S + +++ P+REL QI + ++ + + L GG
Sbjct: 62 ERLKRYATSST-----SPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTV-LFGG 115
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N +Q LR IVV T GR+ + ++ + +VLDE D +L F + +
Sbjct: 116 VNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIR 174
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ + PK +RQT++ SAT + + A+ + H P +V+
Sbjct: 175 KIMQML----------PK-------QRQTLLFSATFSPPIRKLAQDFMHTPEMVEVA--- 214
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ +++N+N++ +H V L+ K + L R +
Sbjct: 215 -----------------AQNTTNANVE------------QHIIAVDALK-KRNLLERLIV 244
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L VI F + + L R + A +HGD + +R TL FK G +RVLV
Sbjct: 245 DLHMNQVIVFCKTKQSVDQVTRDLVRRHIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVA 304
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N +LPT Y HR GRTGR G G +S+ ++ E
Sbjct: 305 TDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTE 356
>gi|170768852|ref|ZP_02903305.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
gi|170122400|gb|EDS91331.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
Length = 457
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L V
Sbjct: 10 LPPAQLANLNELGYLTMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQHVDVTL 69
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
++ +A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 70 FQT-------------QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVTLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + +PL ++
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRNPLAIEIDTT-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
++LPP + +Y T Q K+ L+R + +
Sbjct: 211 -------------------------EALPPIEQQFY-ETSAQGKIPLLKRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVYDALNEAGQSALALHGDLEQRERDQTLVRFSNGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|307251282|ref|ZP_07533202.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306856680|gb|EFM88816.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 445
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 187/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY ++HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNVEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K+G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDINDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
Length = 464
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|330926544|ref|XP_003301506.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
gi|311323638|gb|EFQ90408.1| hypothetical protein PTT_13026 [Pyrenophora teres f. teres 0-1]
Length = 514
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 208/433 (48%), Gaps = 71/433 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F L + P L+ L PT +Q++ IP ILK D + S TG+GKT+A+ +PIL
Sbjct: 85 NFASLNVAPWLVASLASMEIKRPTGIQASCIPEILKGKDCIGGSRTGTGKTVAFSVPILQ 144
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K S + +G I AVIV P+REL +QI ++K + P K + + GG+
Sbjct: 145 KW------SEDPSG-------IFAVIVTPTRELAIQIYEQVKAISAPQSMKPIL-ITGGS 190
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCR---FLVLDEIDELLSFNFRE 286
++ Q AL ++P +V+ TPGR+AE I +G+ G R F+V DE D LL+ +
Sbjct: 191 DQRSQAIAL-ASRPHVVIATPGRLAEHIRTSGEDTICGLRRVKFVVFDEADRLLAPG-KG 248
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+M +E S L + RQT++ +ATV V+ + H P
Sbjct: 249 SMLPDLETC-----------LSVLPPKESRQTLLFTATVTPEVM----ALKHQP------ 287
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
PG L P+ S ++ D ++PP L+ Y T + HK
Sbjct: 288 ----------RAPGRL--PIFVSEVDTE------DLAIPPRLQQKYLQTPVTHK-----E 324
Query: 407 C-VHAL------DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
C +H L ++VI F N T+ + L + LH L + R + L +F
Sbjct: 325 CYLHVLLNTPVNSNKSVIIFCNRTKTATLLEYMLRLLDHRVTALHSGLKQTDRVSNLARF 384
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ R+LV +++ARGLD+ E LV+N D+P D Y HR GRT R GR GT ++ +
Sbjct: 385 RAQAARILVATDVAARGLDIPEVALVINFDVPRDPDDYIHRVGRTARAGRVGTSITFIGQ 444
Query: 520 PEVFVVKKMQKQL 532
+V ++ ++ ++
Sbjct: 445 RDVDLILAIETRV 457
>gi|359451210|ref|ZP_09240620.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
gi|358042989|dbj|GAA76869.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
Length = 438
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 197/443 (44%), Gaps = 72/443 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + +G+ PT +Q+ AIP+I++ DV+ + TG+GKT + LP++
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ G K + A+I+AP+REL +Q+ +++ S+ + + GG
Sbjct: 62 RLS---------TGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFV-VYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK I+V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMQRLRKGVD-ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ M A+RQ +M SAT FS
Sbjct: 171 LIAK-----------------MPAKRQNLMFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S + N AK QS+ Y V K K L + +
Sbjct: 190 -DDIRALAKGLINDPVEISVAAKNTTAKSVTQSV-------YAVDK-GRKTALLSHLIRS 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V +LE + A +HG+ + AR L FK+GEVRVLV
Sbjct: 241 NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S +
Sbjct: 301 DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTIDD--------- 351
Query: 531 QLAVPIQACEFTEGRLVIGKEEE 553
AV + E G L+ EEE
Sbjct: 352 --AVDLYGIERFIGELIPRAEEE 372
>gi|283832995|ref|ZP_06352736.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
gi|291071607|gb|EFE09716.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
Length = 457
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP LE L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L +
Sbjct: 10 LPAAQLENLNELGYLEMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQHI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
++++++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DAALFQMQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDEVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ V L
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQQDPLTIEIDTVDAL----- 213
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
PA++ + T K+ L++ + +
Sbjct: 214 -----------------------------PAIEQQFFETSSHGKIPLLQKLLSQYQPASC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L A G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHIHRIGRTARAGNSGLAISFCAPEE 349
>gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
Length = 464
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|422908040|ref|ZP_16942819.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-09]
gi|341642650|gb|EGS66993.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-09]
Length = 459
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 200/433 (46%), Gaps = 64/433 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI ++ + G + + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVR-IYGRHLPLSSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK G++R+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGDIRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQLAVPIQACEF 541
+ L I F
Sbjct: 362 TQALLPRINLAGF 374
>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 442
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 197/414 (47%), Gaps = 64/414 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELG+ L+ + G+ PT++Q +IP L+ D++ + TGSGKT A+ LPIL
Sbjct: 10 TFKELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPILQ 69
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ +KS A +++P+REL +QI + + L G LVGG
Sbjct: 70 SLLEASEKSVQA---------FFACVLSPTRELAIQIAEQFEAL-GSDIGVKCAVLVGGV 119
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ +Q AL K +P IVV TPGR+ + +S ++LVLDE D LL+ +F +++
Sbjct: 120 DMVQQSIALGK-RPHIVVATPGRLVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFEKSLD 178
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I++ + R ER+T + SAT+ V + R+ +P+ ++A
Sbjct: 179 EILKVIPR-----------------ERRTFLFSATMTKKVKKLQRACLRNPVKIEA---- 217
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV-DTLRRCV 408
S S+ L KQ + +P K Y V L K T
Sbjct: 218 ----------------ASKYSTVDTL--KQEYRFIPAKYKDCYLVYILTEKSGSTSMVFT 259
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
DA T +A + L G++A ++G + + R L KFK GE +L+
Sbjct: 260 RTCDATTFLALV------------LRNLGLRAIPINGHMTQSKRLGALNKFKAGECNILI 307
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
++++RGLD+ D+V+N D+PT+S Y HR GRT R GR G +S+ + EV
Sbjct: 308 CTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEV 361
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/434 (28%), Positives = 203/434 (46%), Gaps = 62/434 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL LL+ + +G+ P+ +Q AIP +L+ DV+ + TG+GKT + LP+L
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLH 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ N G++ + A+++ P+REL QI +++ D K+ + GG
Sbjct: 62 NL--------IANPRQGRRK-VRALVLTPTRELAAQIYDNVREYSKYVDIKST-VIFGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N++ Q +R+ I+V TPGR+ ++ G L FLVLDE D +L F + +
Sbjct: 112 NQNPQVRTIRQGVD-ILVATPGRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKK 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ V A+RQ ++ SAT + + A S +P+LV+A
Sbjct: 171 VLRLVP-----------------AKRQNLLFSATFNKDIKKLASSILTNPVLVEA----- 208
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ N A++ DQ Y V K K + L + ++
Sbjct: 209 --------------------TPENTTAEKVDQKT-------YRVDK-SRKTEMLIKFINE 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ V+ F KL+ G+ +A +HG+ + AR L FK+G++RVLV
Sbjct: 241 GNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ V+N +LP Y HR GRTGR G G +S+ EV V+ ++K
Sbjct: 301 DIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRGIEK 360
Query: 531 QLAVPIQACEFTEG 544
L + + E EG
Sbjct: 361 LLGEKLHS-EVLEG 373
>gi|424910616|ref|ZP_18333993.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846647|gb|EJA99169.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 498
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 201/431 (46%), Gaps = 66/431 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL +L + G+ PT +Q+ AIP L+ D+ + TG+GKT +++LP+L+
Sbjct: 3 TFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI--EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q+ +K G + K V L+G
Sbjct: 63 LL------------EKGRARARMPRTLILEPTRELAAQVAENFEKY-GKNHKLNVALLIG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q+ L + +++ TPGR+ + GKL G LV+DE D +L F +
Sbjct: 110 GVSFEDQDRKLERGAD-VLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI + + P + RQT+ SAT+P + + A + +P+ V+
Sbjct: 169 ERIAKMI----------PFT-------RQTLFFSATMPPEIQKLADRFLQNPVRVE---- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
++ P S AK Q + A Y K LR V
Sbjct: 208 -------------VAKPSS--------TAKTVAQRIVAAHNKDY------EKRAVLRDLV 240
Query: 409 HALDAQ--TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
A +A+ I F N + + D L+ G LHGD+ + +R+T L+ FK+G +++
Sbjct: 241 RAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFKDGNLKL 300
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV ++++ARGLD+ + V N D+P S Y HR GRTGR GR G +I + + +
Sbjct: 301 LVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTKSDTKYLD 360
Query: 527 KMQKQLAVPIQ 537
++K + I+
Sbjct: 361 AIEKLIGEKIE 371
>gi|32035479|ref|ZP_00135436.1| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209462|ref|YP_001054687.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|303250442|ref|ZP_07336639.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307251483|ref|ZP_07533390.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|126098254|gb|ABN75082.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|302650430|gb|EFL80589.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860947|gb|EFM92953.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 445
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 187/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ +P L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTSVQAETVPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY ++HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNVEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K+G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|145517903|ref|XP_001444829.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412262|emb|CAK77432.1| unnamed protein product [Paramecium tetraurelia]
Length = 1127
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 133/452 (29%), Positives = 209/452 (46%), Gaps = 72/452 (15%)
Query: 89 DGIKAAGVK-KSLEIESAPFAANSFLELG---LPPLLLERLEREGFNVPTEVQSAAIPSI 144
D +KA + K+++ + P+ FL G PP + ++ F PT +QS P I
Sbjct: 78 DFLKANEIAIKAIDGQPCPYP---FLTWGGTQFPPQIQNVIDGLNFRAPTPIQSVVFPLI 134
Query: 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN-GNGESGKKTDIEAVIVAPSREL 203
L +D++ + TGSGKT YLLP L ++ K N G+ + E +I+AP+REL
Sbjct: 135 LSGYDLIGVAETGSGKTFGYLLPGLIQI-----KCQNYGSNFRNRINGPEILILAPTREL 189
Query: 204 GMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL 263
MQI +++ + P++ V GG NR +Q + +++N P I+V PGR+ + G L
Sbjct: 190 VMQIAQQVSLFMKPNNL-TVATAYGGQNRDQQAQQIKRN-PDILVACPGRLKDFLQEGIL 247
Query: 264 HTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSA 323
+LV+DE D LL F + + IV+ R +RQT+ SA
Sbjct: 248 DLSKVTYLVIDEADRLLDMGFEDDVRFIVQRT-----------------RQDRQTVFFSA 290
Query: 324 TVPFSVIRAARSW-GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ 382
T P +V + + DP+ VQ G NL+ N N+ DQ
Sbjct: 291 TWPKAVRNLSLDFCAEDPIYVQV------------GRSNLT-------VNKNI-----DQ 326
Query: 383 SLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR-QLKDAVFKLEARGMKAA 441
+ C+ Q K+ TL + L + TR + + G A
Sbjct: 327 EI-------ICLYNNQ-KLQTLLDILDQLKINDKVLIFAETRISCEQLSVDMTQEGYYAV 378
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501
LHG+ + R + ++ +K G+ ++L +L++RGLDV++ +V+N D P Y HR
Sbjct: 379 ALHGNKTQGQRDSIMECYKKGDTKLLCATDLASRGLDVSDITVVINYDFPKYFDDYIHRI 438
Query: 502 GRTGRLGRRGTVVSICEEPEVFVVKKMQKQLA 533
GRTGR GR+G +S F + K Q Q+A
Sbjct: 439 GRTGRAGRKGRAISF------FAIGKDQPQMA 464
>gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
VL426]
gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
VL426]
Length = 464
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|165977454|ref|YP_001653047.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165877555|gb|ABY70603.1| ATP-dependent RNA helicase protein [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 449
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 115/420 (27%), Positives = 186/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVSEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY L+HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNLEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
Length = 549
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 135/443 (30%), Positives = 209/443 (47%), Gaps = 82/443 (18%)
Query: 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGK 160
EIE F LG+ +LL+ +E G P +Q+ AIPS L+ HD++ + TGSGK
Sbjct: 92 EIELTKENTGGFAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGHDILGIAQTGSGK 151
Query: 161 TLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220
T A+ LPIL K+ L DK + A+I+AP+REL +QI + I+ + S
Sbjct: 152 TAAFSLPILQKIIGLGDKR--------RPKTARALILAPTRELAVQIEQTIRN-VSKSAH 202
Query: 221 KAVQQLVGGANRSRQEEALRKNKPAI--VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ ++GG ++ Q +++ P I ++ TPGR+ ++ G + R+LVLDE D
Sbjct: 203 ISTALVLGGVSKLSQ---IKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADR 259
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + RI A A AERQT + SAT+P + A
Sbjct: 260 MLDMGFINDVKRI-----------------AKATHAERQTALFSATMPKEIASLAERLLR 302
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
DP+ V+ P ++S +T++
Sbjct: 303 DPVRVEV------------------APQGTTASE---------------------ITQVV 323
Query: 399 HKVDT--LRRCVHAL----DAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLA 451
H V T RR + A+ D ++VI F T+ DAV + LE A +HG+ + A
Sbjct: 324 HPVPTKEKRRLLSAMLTDADMRSVIVF-TRTKHGADAVVRHLERDRYDVAAIHGNKSQNA 382
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG 511
R L F++G +R+LV +++ARG+DV VVN DLP + Y HR GRTGR G G
Sbjct: 383 RQRALNGFRDGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASG 442
Query: 512 TVVSI----CEEPEVFVVKKMQK 530
+++ EE ++ V+++ +
Sbjct: 443 ASITLYDPATEESKLRAVERVTR 465
>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
Length = 438
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 198/425 (46%), Gaps = 67/425 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP--- 167
SF LGL LL + ++G+ P+ +Q+ AIP +L+ DV+ + TG+GKT + LP
Sbjct: 2 SFKSLGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPMLQ 61
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
+LS+ PL+ K I A+I+ P+REL Q+ +K+ D ++ +
Sbjct: 62 LLSQQPPLR------------KRPIRALILTPTRELAAQVYANVKEYSTFLDIRSTV-IF 108
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG N +R + A +N I+V TPGR+ ++ + L LVLDE D +L F
Sbjct: 109 GGVN-ARPQIATLRNGVDILVATPGRLLDLHSQKALSLAKVEMLVLDEADRMLDMGFLRD 167
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ R++E V +R RQ ++ SAT + + A+S H P+ V+A
Sbjct: 168 IKRVIELVPKR-----------------RQNLLFSATFSKDIKKLAQSILHHPVSVEA-- 208
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ N A++ +Q + Y V K K + L +
Sbjct: 209 -----------------------TPENTTAEKVNQKV-------YKVDK-PRKTELLIKL 237
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + V+ F KL A+ + AA +HG+ + AR+ L FK G +R+L
Sbjct: 238 ISEGNWSQVLVFTRTKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRIL 297
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+ V+N +LP Y HR GRTGR G G +S+ E V+
Sbjct: 298 VATDIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVSAEEYEYVRG 357
Query: 528 MQKQL 532
++K L
Sbjct: 358 IEKLL 362
>gi|443294242|ref|ZP_21033336.1| Putative ATP-dependent RNA helicase (DEAD/DEAH box helicase
domain-containing protein) [Micromonospora lupini str.
Lupac 08]
gi|385882547|emb|CCH21487.1| Putative ATP-dependent RNA helicase (DEAD/DEAH box helicase
domain-containing protein) [Micromonospora lupini str.
Lupac 08]
Length = 580
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/427 (29%), Positives = 193/427 (45%), Gaps = 61/427 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A +F LG +E L G +Q AIP L+ D++ Q+ TG+GKTL + +P+
Sbjct: 37 APTFAALGAREETVEALAAAGITRAFAIQEYAIPIALRGVDLIGQAPTGTGKTLGFGVPL 96
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L +V + G G G +A++V P+RELG+Q+ +++ G + V + G
Sbjct: 97 LDRV------FAPGEGSDGVP---QALVVVPTRELGIQVAKDLAAA-GRTRGVRVLPIYG 146
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q +ALRK I+VGTPGR+ ++ L LVLDE D +L F + +
Sbjct: 147 GVAYEPQIDALRKGV-EILVGTPGRLMDLQKQKHLRLDRVHALVLDEADRMLDLGFLDDV 205
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAE-RQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+I LAM E RQT++ SAT+P ++ +R + P+ + A +
Sbjct: 206 EKI------------------LAMLPEDRQTMLFSATMPDPIVTLSRRFLRQPMTIHAGH 247
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
TGP P + T +KV+ + R
Sbjct: 248 TA------ETGPS-------------------------PQTEQLVYRTHSMNKVEVVARI 276
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ A + F R L+ RG A +HGDLG+ AR L+ F+ G++ +L
Sbjct: 277 LQAEGRGLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDIL 336
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLDV V+N D P D Y HR GRTGR G G V+ + ++ +
Sbjct: 337 VATDVAARGLDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRI 396
Query: 528 MQKQLAV 534
+ K L +
Sbjct: 397 IDKTLGL 403
>gi|297738524|emb|CBI27769.3| unnamed protein product [Vitis vinifera]
Length = 584
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/455 (27%), Positives = 215/455 (47%), Gaps = 52/455 (11%)
Query: 103 ESAPFAANSFLELGLPPLLLERL-EREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKT 161
ES FA+ SF LGL P L ++L ER GF VPT VQ+ AIP IL V++ + TG+GKT
Sbjct: 23 ESEIFASCSFSSLGLHPTLCDQLRERMGFEVPTIVQAEAIPVILAGRHVLVNAATGTGKT 82
Query: 162 LAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKK 221
+AYL P+++ + + G A+++ P+REL MQ+ ++KLL
Sbjct: 83 IAYLAPVINHLHKYDPRIERSAGTF-------ALVLVPTRELCMQVYEILQKLLHRFHWI 135
Query: 222 AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE--ISAAGKLHTHGCRFLVLDEIDEL 279
++GG NRS+++ LRK +I+V TPGR+ + + + LHT R+++ DE D +
Sbjct: 136 VPGYVMGGENRSKEKARLRKG-ISILVATPGRLLDHLKNTSSFLHT-NLRWIIFDEADRI 193
Query: 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
L F + + I++ + +RQ +++SAT+ V A+ +
Sbjct: 194 LELGFGKEIEEILD-----------------LLEFQRQNLLLSATLNEKVNHLAQISLEN 236
Query: 340 PLLV--QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYY----C 393
P+ + K + P + G + + D LP L Y C
Sbjct: 237 PVTIGLDGKKMQPKPPLEHFGSVEFDVDEDSEKLHKIISPSNGDYKLPAQLVQRYVKVPC 296
Query: 394 VTKLQHKVDTLRRCVHALDAQTVIAFMN--NTRQLKDAVF-----------KLEARGM-- 438
++L + L+ +Q ++ F + + ++F + E R M
Sbjct: 297 GSRLVVLLSILKHLFEREASQKIVVFFSTCDAVDFHYSLFSAFLWPANLHPETEDRQMFL 356
Query: 439 --KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
K +LHG++ R TT + FK + +L++ +++ARGLD + ++ D P ++
Sbjct: 357 RFKTFQLHGNMKHEDRRTTFQTFKKEKSALLLSTDVAARGLDFPKVRCIIQYDSPGEASE 416
Query: 497 YAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
Y HR GRT RLG RG + + E+ ++ ++K
Sbjct: 417 YVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKH 451
>gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
Length = 464
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRAYQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|87118170|ref|ZP_01074069.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
gi|86165804|gb|EAQ67070.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
Length = 459
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 195/422 (46%), Gaps = 69/422 (16%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
S+E+ S F+ + G +L+ L GF+ T++Q+ AIP + D++ S TGS
Sbjct: 9 SIEVLSLQFS-----DFGFDARILQSLRHWGFDSATQIQAQAIPEAMAGRDLLASSKTGS 63
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTLAYL+P L +V +K S+ D +I+ P+REL Q+ +++ LL S
Sbjct: 64 GKTLAYLIPALHRVYRVKALSNK---------DARVLILVPTRELAKQVYSQLR-LLVAS 113
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
K ++GG N + Q + L+K+ P +V TPGR+ + + G L+LDE D
Sbjct: 114 SKLKTALILGGENFNDQIKDLQKD-PQFIVATPGRLVDHLNQRNMFLDGLELLILDEADR 172
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + + +I + R RQT+ SAT+ + +
Sbjct: 173 MLDLGFADQLKQIDDAASHRL----------------RQTLFFSATLDNAEVNDI----- 211
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
A+ ++ S A G +G+ +S+++ K +Y L
Sbjct: 212 ------AQRLLNEPSRVAIG--------AGTDVHSDIKQK------------FYLCDHLD 245
Query: 399 HKVDTLRRCVHALDAQTV---IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455
HK L H L+ +T+ I F LE +G L+GDL + AR+
Sbjct: 246 HKEAIL---THVLEQETIKQGIIFTATKLDTVRLASLLEEKGFTTQALNGDLTQSARNKV 302
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
+ F G ++LV+ +L++RGLD+A V+N D+P S Y HR GRTGR G +G S
Sbjct: 303 MDSFARGHFQILVSTDLASRGLDIANVTHVINFDIPKHSEEYVHRTGRTGRAGFQGDAFS 362
Query: 516 IC 517
+
Sbjct: 363 LV 364
>gi|407915825|gb|EKG09337.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 737
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 188/390 (48%), Gaps = 53/390 (13%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PT +Q+AA PS+L DV+ + TGSGKTL + +P + + L K
Sbjct: 342 FTAPTPIQAAAWPSLLSGRDVIGVAETGSGKTLGFGVPCVRHIMSLP-----------KA 390
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
++AVIV+P+REL QI ++ K+ P+ K+V + GG + Q+ L+K +IVV
Sbjct: 391 KGVKAVIVSPTRELASQIHEQLVKIAEPAGLKSVC-IYGGVPKDEQKAGLKKA--SIVVA 447
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ ++ G ++VLDE D +L F +A+ +I+ S P
Sbjct: 448 TPGRLNDLIDEGAADISKAGYVVLDEADRMLDKGFEDAIRKII------SSTRPIN---- 497
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGS 369
ERQT+M +AT P SV A ++ P+ + + N +G +
Sbjct: 498 -----ERQTLMFTATWPKSVQELASTFMKSPVKITIGD-------------NPTGEL--- 536
Query: 370 SSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429
+N + Q + + P K Y L+ ++ ++ F ++
Sbjct: 537 --RANTRITQTVEVVDPRDKEYRLTQILKEHTAGSKKN------DRILIFCLYKKEATRV 588
Query: 430 VFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLD 489
L +G K +HGDL + R+ +L+KFK GE+ +LV +++ARGLD+ LVVN+
Sbjct: 589 EETLRRKGFKVGGIHGDLSQAQRTASLEKFKKGEIPLLVATDVAARGLDIPAVKLVVNVT 648
Query: 490 LPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
P + Y HR GRTGR G+ G +++ E
Sbjct: 649 FPLTAEDYVHRIGRTGRAGQDGKAITLFTE 678
>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
Length = 766
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 196/435 (45%), Gaps = 63/435 (14%)
Query: 92 KAAGVKKSLEIESAPFAA----NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN 147
+ A KSL I + F +F + G P L+ + ++ + PT +Q A+P +L
Sbjct: 197 EVADYMKSLAIRVSGFDVPRPIKNFQDCGFPVPLMNAIAKQAYEKPTTIQCQALPIVLSG 256
Query: 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207
D++ + TGSGKT A++LP++ + E K+ VI AP+REL QI
Sbjct: 257 RDIIGIAKTGSGKTAAFVLPMIVHI--------MDQPELEKEEGPIGVICAPTRELAHQI 308
Query: 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267
E KK P + + V + GG ++ Q + L K +V+ TPGR+ ++ L
Sbjct: 309 YLEAKKFAKPYNLR-VAAVYGGVSKFDQFKEL-KAGCEVVIATPGRLIDLLKMKALKMFR 366
Query: 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF 327
+LVLDE D + F + IV + R +RQT++ SAT+P+
Sbjct: 367 ATYLVLDEADRMFDLGFEPQIRSIVGQI-----------------RPDRQTLLFSATMPY 409
Query: 328 SVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPA 387
V R AR DP+ V G +N KQ LP
Sbjct: 410 KVERLAREILTDPIRVTV----------------------GQVGGANEDIKQVVNVLPSD 447
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
++ + L + +D V+ F + ++ + +L RG + A LHGD
Sbjct: 448 VEKMPWL---------LEKLPGMIDDGDVLVFASKKARVDEIEKELNQRGFRIAALHGDK 498
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507
+ +R TL+KFK+G VLV +++ARGLD+ VVN D+ + + HR GRTGR
Sbjct: 499 DQASRMETLQKFKSGTYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRA 558
Query: 508 G-RRGTVVSICEEPE 521
G + GT ++ + E
Sbjct: 559 GDKDGTAYTLITQKE 573
>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
Length = 465
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 197/443 (44%), Gaps = 72/443 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + +G+ PT +Q+ AIP+I++ DV+ + TG+GKT + LP++
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ G K + A+I+AP+REL +Q+ +++ S+ + + GG
Sbjct: 62 RLS---------TGPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFV-VYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK I+V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMQRLRKGVD-ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ M A+RQ +M SAT FS
Sbjct: 171 LIAK-----------------MPAKRQNLMFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S + N AK QS+ Y V K K L + +
Sbjct: 190 -DDIRALAKGLINDPVEISVAAKNTTAKSVTQSV-------YAVDK-GRKTALLSHLIRS 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V +LE + A +HG+ + AR L FK+GEVRVLV
Sbjct: 241 NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S +
Sbjct: 301 DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDD--------- 351
Query: 531 QLAVPIQACEFTEGRLVIGKEEE 553
AV + E G L+ EEE
Sbjct: 352 --AVDLYGIERFIGELIPRAEEE 372
>gi|432440864|ref|ZP_19683207.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE189]
gi|432445964|ref|ZP_19688267.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE191]
gi|432465428|ref|ZP_19707521.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE205]
gi|432553423|ref|ZP_19790152.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE47]
gi|432583530|ref|ZP_19819933.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE57]
gi|433013567|ref|ZP_20201937.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE104]
gi|433023209|ref|ZP_20211217.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE106]
gi|433072365|ref|ZP_20259052.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE129]
gi|433119884|ref|ZP_20305582.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE157]
gi|433182853|ref|ZP_20367141.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE85]
gi|433324632|ref|ZP_20401884.1| ATP-dependent RNA helicase DbpA [Escherichia coli J96]
gi|430967796|gb|ELC85143.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE189]
gi|430974509|gb|ELC91442.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE191]
gi|430994711|gb|ELD11033.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE205]
gi|431086140|gb|ELD92244.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE47]
gi|431117229|gb|ELE20492.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE57]
gi|431533093|gb|ELI09596.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE104]
gi|431538710|gb|ELI14694.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE106]
gi|431590749|gb|ELI61756.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE129]
gi|431646313|gb|ELJ13812.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE157]
gi|431710068|gb|ELJ74503.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE85]
gi|432346828|gb|ELL41293.1| ATP-dependent RNA helicase DbpA [Escherichia coli J96]
Length = 457
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 181/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
D S +A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 DVS---------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|333395603|ref|ZP_08477422.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
gi|336393187|ref|ZP_08574586.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
gi|420145866|ref|ZP_14653315.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402485|gb|EJN55821.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 449
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 212/457 (46%), Gaps = 71/457 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
++F + L P +L+ L F PT VQ IP I VV QS TGSGKT A+L+PI
Sbjct: 2 STFKDFKLKPYILQALADIRFIQPTPVQEKLIPLIKAGRSVVGQSQTGSGKTHAFLIPIF 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS-DKKAVQQLVG 228
+++ + +++AVI APSREL QI + +++ S + +Q VG
Sbjct: 62 NQL-------------QEENHEVQAVITAPSRELAEQIYQAAEQIAKFSPEPLNIQHYVG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G ++ RQ E L ++P IV+GTPGRI ++ + L ++ V+DE D L F +
Sbjct: 109 GTDKQRQIEKLHHHQPQIVIGTPGRILDLIKSKALKSYTATTFVVDEADMTLDMGFLNEV 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I A A Q ++ SAT+P + R + + P++ +
Sbjct: 169 DKI-----------------AATFPANLQMLVFSATIPQKLEPFLRKYMNSPVIEE---- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
IP E++ + P + +Y T+ + K + +
Sbjct: 208 IPTETI-----------------------------ISPTISNYLVSTQGKDKNQLIYQLA 238
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ + F N R++ + L +G+K A++ G L R T+++ + + + +V
Sbjct: 239 KNSNPYLALIFANTKRRVDEIADYLTKQGLKVAKISGGLTPRDRKKTMRQIQKLDFQYVV 298
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+L+ARG+D+A V+N +LP D + HR GRTGR G G +++ E + + ++
Sbjct: 299 ATDLAARGIDIAGISHVINTELPADQEFFIHRVGRTGRNGLSGIAITLYEPGQEKEITEL 358
Query: 529 QKQLAVPIQACEFTEGRLVIGKE------EEKTLEAV 559
+K L + + +G+L+ G + EKT +A+
Sbjct: 359 EK-LGIKFEPKRLKDGQLIDGYDRNRRAKREKTKQAL 394
>gi|432674350|ref|ZP_19909834.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE142]
gi|431216329|gb|ELF13968.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE142]
Length = 457
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G + C E
Sbjct: 305 LDIKSLELVVNFELAWDPEAHVHRIGRTARAGNSGLAIGFCAPEE 349
>gi|417302448|ref|ZP_12089548.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica WH47]
gi|327541188|gb|EGF27732.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica WH47]
Length = 556
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 199/432 (46%), Gaps = 57/432 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F +LGL LL+ LE+ G+ PT +Q+ +IP IL +DV+ + TG+GKT A+ LPIL
Sbjct: 73 NKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPIL 132
Query: 170 SKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
+ + + S G + I ++++P+REL QI + + G + +
Sbjct: 133 QIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFR-IYGKKTRLRSTVI 191
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG N++ Q L+ +V TPGR+ ++ G + LVLDE D +L F
Sbjct: 192 FGGVNQNPQVRELQSGVDTLVA-TPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLP 250
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI++ + R +RQ ++ SAT+P + + A DP+ +Q
Sbjct: 251 DVKRILKFLPR-----------------DRQNLLFSATMPGPIRKLADEILVDPVTIQ-- 291
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ P + P S QAD+ P L +++ TK R
Sbjct: 292 -IAPQK------------PTVERIEQSICFVAQADK---PRLLNHFIETKATGSTLVFTR 335
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
H DA +L G+KAA +HG+ + R TL KFKN E+ V
Sbjct: 336 TKHGADA---------------VARRLVKAGVKAAAIHGNKTQANRVRTLNKFKNDELDV 380
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC--EEPEVFV 524
LV +++ARG+D+ V+N D P Y HR GRTGR GR G V C E + F+
Sbjct: 381 LVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFCGGHETKFFI 440
Query: 525 VKKMQKQLAVPI 536
+ + +L +P+
Sbjct: 441 AIEREIKLQIPV 452
>gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
Length = 454
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 209/435 (48%), Gaps = 67/435 (15%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E A A++F ELG+ L+E + G+ PT +Q+ AIP L+ D++ + TGSGKT
Sbjct: 17 EPAARQASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTG 76
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
A+ LPIL ++ SN E A +++P+REL +QI + + L G +
Sbjct: 77 AFALPILQEL------LSNRQAEQS----FFACVLSPTRELAIQIAEQFEAL-GSAIGLR 125
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLS 281
LVGG +R +Q ++ K +P IVVGTPGR+ + ++ ++LVLDE D+LL+
Sbjct: 126 CSVLVGGVDRVQQVLSIGK-RPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLN 184
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
F +++ I+ + PK +R+T + SAT+ V + R+ +P
Sbjct: 185 VEFEKSLDDILREI----------PK-------DRRTFLFSATMTKKVNKLQRACLRNPA 227
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
V+A S S+ +L KQ +P K Y + L +
Sbjct: 228 KVEA--------------------ASKYSTVDSL--KQEFYFVPADDKDCYLLHVLNERQ 265
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
D++ ++ F+ + L G+KA + G + + R L +FK
Sbjct: 266 DSM-----------IMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKA 314
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+ +L+ ++++RGLD+ D+V+N D+P +S Y HR GRT R GR G VS+ + E
Sbjct: 315 KDCNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYE 374
Query: 522 ----VFVVKKMQKQL 532
V + K + KQ+
Sbjct: 375 AQWFVLIEKLLGKQI 389
>gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase [Pantoea sp. At-9b]
gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
Length = 459
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 180/406 (44%), Gaps = 65/406 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP L+ L GF+ T +Q+AA+P+IL+ DV Q+ TGSGKT A+ + +L ++
Sbjct: 10 LPASQLDNLREMGFDAMTPIQAAALPAILQGRDVRAQAKTGSGKTAAFGIGLLQRI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+ +A+++ P+REL Q+ +++L + + L GG S Q
Sbjct: 66 ---------DNSQFHTQALVLCPTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L + P IVVGTPGRI + L + + LVLDE D +L FR+ M I+
Sbjct: 117 DSL-VHAPHIVVGTPGRILDHLKRDNLDLNQLQTLVLDEADRMLEMGFRDDMEAII---- 171
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
G P A RQT++ SAT P ++ + + D L V + L
Sbjct: 172 ---GFTP----------AARQTLLFSATWPDTIASLSERYQRDALAVATETEAEL----- 213
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
PA++ + + + L + +
Sbjct: 214 -----------------------------PAIEQRFIEVSASERTNLLSALLSQQQPTSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N R+ D L R + A LHGDL + R L +F NG +RVL+ +++ARG
Sbjct: 245 VVFCNTKRECDDIAAALNDRQISALALHGDLEQRDRERVLIRFANGSIRVLIATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
LD+ LVVN L D + HR GRTGR G G VS E+
Sbjct: 305 LDIKSLALVVNYHLAWDPEVHLHRIGRTGRAGESGLAVSFVAADEM 350
>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase [Syntrophobotulus glycolicus DSM 8271]
gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
DSM 8271]
Length = 382
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 200/428 (46%), Gaps = 71/428 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL + +++ L+ EG+ PT +Q AIP++LK D++ + TG+GKT A+ +P+L
Sbjct: 3 FEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLLQI 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI---VREIKKLLGPSDKKAVQQLVG 228
+ S E +T I A+I+AP+REL +Q +R K LG K V + G
Sbjct: 63 L------SRERINERAPRT-IRALILAPTRELALQTGENLRAYGKYLGI--KHTV--IFG 111
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G ++ Q A+ K I+V TPGR+ ++ G + + LVLDE D +L F M
Sbjct: 112 GVSQDAQTRAM-KAGVDILVATPGRLLDLMGQGYVRLDHIKLLVLDEADRMLDMGFAHDM 170
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI+ + A +QT++ SAT+P
Sbjct: 171 KRILAK-----------------LPAAKQTLLFSATMP---------------------- 191
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK---VDTLR 405
M A LS P+ + + A DQS+ Y V K K ++ LR
Sbjct: 192 ---PEMKAMAGAILSNPVKIEVAPVSSTADTIDQSV-------YFVEKSGKKALLIELLR 241
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
++D+ V F + V LE +KA +HG+ + AR T L FK R
Sbjct: 242 N--QSVDSALV--FTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTR 297
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ARG+DV E V+N DLP Y HR GRTGR G GT +S C++ E +
Sbjct: 298 VLVATDIAARGIDVQELSHVINFDLPNIPETYVHRIGRTGRAGMGGTALSFCDDEEKTYL 357
Query: 526 KKMQKQLA 533
+ +QK +A
Sbjct: 358 RDIQKLIA 365
>gi|421349929|ref|ZP_15800298.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-25]
gi|395956546|gb|EJH67140.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-25]
Length = 461
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKDG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKVGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|442609095|ref|ZP_21023836.1| ATP-dependent RNA helicase VCA0768 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441749707|emb|CCQ09898.1| ATP-dependent RNA helicase VCA0768 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 409
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 205/419 (48%), Gaps = 63/419 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL P LL+ L GF PT +Q AIP +L D++ + TGSGKT A+LLPIL+
Sbjct: 2 SFQSLGLEPQLLDALSSLGFEQPTPIQLDAIPVVLTGKDLLASAETGSGKTAAFLLPILN 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ ++ ++ A+++AP+REL QIV+ ++L ++ + V L GGA
Sbjct: 62 RLV-----------QTVERGIPRALVLAPTRELAQQIVKHGEELAAKTELRFVL-LQGGA 109
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N Q E L + IVV TPGR+ + G L +V DE D LL F++ + R
Sbjct: 110 NIGPQCERLAQGVD-IVVATPGRLLDHLIKGSLSLSAIETVVYDEADRLLDMGFKDEIQR 168
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I +R NP Q+++ SAT+ D + NV+
Sbjct: 169 I----RKRLPTNP-------------QSLLFSATI-------------DDAIENLANVL- 197
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ S + +N A P ++ +Y V + K +
Sbjct: 198 -----------LDKPIRISVAGTNKAAT-------PIIQRFYAVDP-EKKQKLAAYLIGK 238
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + V+ F + + + V + G+ A+ LHGD + R+ L++FK+G++RVLV
Sbjct: 239 NNWRQVLVFARTKQLVDEYVQEFILDGLPASALHGDKTQGHRNKALEQFKDGKIRVLVAT 298
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ +V+N++LP + Y HR GRTGR G G +S E +++++++
Sbjct: 299 DVAARGIDIPALSVVINMELPFVAEDYIHRIGRTGRAGNEGLALSFVSIDEEWMLQELE 357
>gi|398798265|ref|ZP_10557566.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
gi|398100982|gb|EJL91210.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
Length = 501
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 131/481 (27%), Positives = 209/481 (43%), Gaps = 82/481 (17%)
Query: 52 SLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANS 111
++ + ++F P KP P+ IP + + AA + I P A S
Sbjct: 4 TIAWLTDFTP-------KPTTLLPLPIPALSAR------LTAAILPA---IRDIPVTAFS 47
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
L LP L+ L GF+ T +Q+A++P+IL+ DV Q+ TGSGKT A+ + +L++
Sbjct: 48 TLT-QLPASQLDNLREMGFDAMTPIQAASLPAILEGRDVRAQAKTGSGKTAAFGVGLLNR 106
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + +A+I+ P+REL Q+ +++L + + L GG
Sbjct: 107 I-------------DNSQFHTQALILCPTRELADQVSNVLRQLARFTRNIKILTLCGGQP 153
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
S Q ++L + P IVVGTPGR+ + L + LVLDE D +L FR+ M I
Sbjct: 154 MSAQRDSL-VHAPHIVVGTPGRLLDHLKRDNLDLSQLQTLVLDEADRMLEMGFRDDMEAI 212
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ G P RQT++ SAT P ++ ++ + D L V +
Sbjct: 213 I-------GFTPE----------TRQTLLFSATWPDTIASLSQRFQRDALAVATE----- 250
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
D++ P ++ + + + L +
Sbjct: 251 -----------------------------DKTELPTIEQQFIEASAKERHSLLSALLSQQ 281
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + F N R+ D L R + A LHGDL + R L +F NG +RVL+ +
Sbjct: 282 QPASCVVFCNTKRECDDVAAALNERDISALALHGDLEQRDRERVLIRFANGSIRVLIATD 341
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ LVVN L D + HR GRTGR G +G VS E+ +++
Sbjct: 342 VAARGLDIKSLALVVNFQLAWDPEVHIHRIGRTGRAGEKGLAVSFVAPDEMVRANALEEY 401
Query: 532 L 532
L
Sbjct: 402 L 402
>gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 462
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 193/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++AP+REL Q+ + +VGG +
Sbjct: 65 LTKRSEKPGKGP---------RALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P A+RQT++ SAT +V + AR D +++ + V
Sbjct: 174 IVE-------ATP----------ADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DGQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
Length = 462
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 193/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++AP+REL Q+ + +VGG +
Sbjct: 65 LTKRSEKPGKGP---------RALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P A+RQT++ SAT +V + AR D +++ + V
Sbjct: 174 IVE-------ATP----------ADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DGQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|345867166|ref|ZP_08819183.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
gi|344048380|gb|EGV43987.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
Length = 613
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 200/422 (47%), Gaps = 65/422 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPI 168
++F ELGL LL+ + GF P++VQ A+P +L K+ D+V + TG+GKT A+ P+
Sbjct: 2 STFQELGLNDDLLKAIADIGFETPSDVQLKAVPILLEKDTDLVALAQTGTGKTAAFGFPM 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L K+ + +++ G +I++P+REL +QI EIK + V + G
Sbjct: 62 LQKI-DMDSRTTQG------------LILSPTRELCLQITNEIKAYGKYCNGLNVVAIYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GA+ + Q +++ I+V TPGR+ ++ + ++ VLDE DE+L+ F+E +
Sbjct: 109 GASITDQAREVKRG-AQIIVATPGRMKDMIKRRLVDISKIKYSVLDEADEMLNMGFKEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ H P+ E+ T + SAT+P V A+ + DP+ + N
Sbjct: 168 TEILSHT----------PE-------EKNTWLFSATMPKEVSNIAKKFMVDPIEITVGN- 209
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S+N + H Y + + + L+R
Sbjct: 210 ------------------KNESTNQ--------------VSHEYYLVNARDRYGALKRLA 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A + F R + +L G A LHGDL + R +K F+N ++++LV
Sbjct: 238 DANPEIFSVIFCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDLVMKSFRNQQIQMLV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+DV + V+N LP + Y HR+GRTGR G+ G + I + EV +K +
Sbjct: 298 ATDVAARGIDVDDITHVINYQLPDEPEIYTHRSGRTGRAGKTGISMVIVSKSEVRKIKSI 357
Query: 529 QK 530
++
Sbjct: 358 ER 359
>gi|332279457|ref|ZP_08391870.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
gi|425422083|ref|ZP_18803274.1| ATP-independent RNA helicase dbpA [Escherichia coli 0.1288]
gi|332101809|gb|EGJ05155.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
gi|408345815|gb|EKJ60127.1| ATP-independent RNA helicase dbpA [Escherichia coli 0.1288]
Length = 457
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQVAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|440231263|ref|YP_007345056.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440052968|gb|AGB82871.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 460
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 190/433 (43%), Gaps = 65/433 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF L LP L L G+ T VQ+AA+P+IL+ DV ++ TGSGKT A+ + +L
Sbjct: 5 SFSSLPLPAAQLANLNELGYAAMTPVQAAALPAILQGQDVRAKAKTGSGKTAAFGIGLLD 64
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ + + +A+++ P+REL Q+ +E+++L + + L GG
Sbjct: 65 KI-------------NVGQVATQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQ 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q ++L + P IVVGTPGR+ E L LVLDE D +L F + +
Sbjct: 112 PMGPQLDSL-VHAPHIVVGTPGRVQEHLRKKTLQLDALSVLVLDEADRMLDMGFADDIDD 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ + +RQT++ SAT P + R + PL V+
Sbjct: 171 VIAYTP-----------------PQRQTLLFSATYPDGIERISARVQRTPLSVEV----- 208
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
AD P ++ + T + L +
Sbjct: 209 -----------------------------ADDDAPLTIEQRFYETTRDQRPALLLAAIRH 239
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F N R + LEAR + A LHGDL + R L +F N RVLV
Sbjct: 240 YQPASCVVFCNTKRDCQSVCDALEARDISALALHGDLEQRDRDQVLVRFANRSCRVLVAT 299
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ + +LVVN ++ D + HR GRTGR G G +++C E+ +++
Sbjct: 300 DVAARGLDIKDLELVVNYEMAFDPEVHVHRVGRTGRAGMSGQAITLCTPQEMVRAHALEE 359
Query: 531 QLAVPIQACEFTE 543
L + + +E
Sbjct: 360 YLQLDLTWAPVSE 372
>gi|408787040|ref|ZP_11198773.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
gi|408486993|gb|EKJ95314.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
Length = 498
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 200/431 (46%), Gaps = 66/431 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL +L + G+ PT +Q+ AIP L+ D+ + TG+GKT +++LP+L+
Sbjct: 3 TFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT 62
Query: 171 KVGPLKDKSSNGNGESGKKTDI--EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q+ +K G + K V L+G
Sbjct: 63 LL------------EKGRARARMPRTLILEPTRELAAQVAENFEKY-GKNHKLNVALLIG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q+ L + +++ TPGR+ + GKL G LV+DE D +L F +
Sbjct: 110 GVSFEDQDRKLERGAD-VLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI + + P + RQT+ SAT+P + + A + +P+ V+
Sbjct: 169 ERIAKMI----------PFT-------RQTLFFSATMPPEIQKLADRFLQNPVRVE---- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
++ P S AK Q + A Y K LR V
Sbjct: 208 -------------VAKPSS--------TAKTVAQRIVAAHNKDY------EKRAVLRDLV 240
Query: 409 HALDAQ--TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
A +A+ I F N + + D L+ G LHGD+ + +R+T L+ FK+G +++
Sbjct: 241 RAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFKDGNLKL 300
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV ++++ARGLD+ + V N D+P S Y HR GRTGR GR G +I + +
Sbjct: 301 LVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTRSDTKYLD 360
Query: 527 KMQKQLAVPIQ 537
++K + I+
Sbjct: 361 AIEKLIGEKIE 371
>gi|395804393|ref|ZP_10483633.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
gi|395433492|gb|EJF99445.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
Length = 415
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/428 (28%), Positives = 197/428 (46%), Gaps = 59/428 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L + + + EG+ PT +Q +IP +L D++ + TG+GKT A+ +PI+ +
Sbjct: 3 FEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPVVLSGRDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + G S K I A++V P+REL +QI E G + GG +
Sbjct: 63 LHRIV-------GSSKKAKQIRALVVTPTRELAVQI-GESFDTYGKYTNLTQLTIFGGVS 114
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
++ Q E L+K I++ TPGR+ ++ G L + LVLDE D++L F + +I
Sbjct: 115 QNPQVETLKKGVD-ILIATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKI 173
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
V+ PK+ RQT++ SAT+P ++ A + DP V+
Sbjct: 174 VKLT----------PKN-------RQTLLFSATMPIAIRELAEMFLQDPAKVEV------ 210
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
P+S ++ N + Y V K + K + L +
Sbjct: 211 ------------SPVSSTAENVE--------------QRVYFVDKTE-KRNLLYSLIKEE 243
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ V+ F + V L + + A +HGD + AR L FKN EV VLV +
Sbjct: 244 NLSNVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLVATD 303
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARG+D+ + V+N DLP Y HR GRTGR G G +S C + E+ K +QK
Sbjct: 304 IAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDELPYWKDIQKL 363
Query: 532 LAVPIQAC 539
+ V ++
Sbjct: 364 IKVDVKTI 371
>gi|78355388|ref|YP_386837.1| DEAD/DEAH box helicase [Desulfovibrio alaskensis G20]
gi|78217793|gb|ABB37142.1| DEAD/DEAH box helicase domain protein [Desulfovibrio alaskensis
G20]
Length = 529
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 190/424 (44%), Gaps = 70/424 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
+P + + R G+ VQ +P L+ D+++QS TGSGKT AYLLP++ ++ P
Sbjct: 45 VPDTIRQAAARAGWQSLMPVQLHTMPYFLQRRDLMVQSRTGSGKTGAYLLPLIDRIDP-- 102
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL---LGPSDKKAVQQLVGGANRS 233
K + +A+++ P+REL +Q+V E + L LG + + + GG
Sbjct: 103 -----------HKNECQALVLVPTRELALQVVHEAEVLYQELGIN----IAAVYGGVGYG 147
Query: 234 RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293
+Q +AL K +VVGTPGR+ + L R L+ DE D +LS F M +
Sbjct: 148 KQTDAL-KAGAQLVVGTPGRVLDHLLRRTLTLDALRVLLFDEADRMLSIGFYPDMKEVQR 206
Query: 294 HVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLES 353
++ RR + T + SAT P V+R A + HDP ++
Sbjct: 207 YLPRRRIS----------------TYLFSATYPPHVVRLAGEFLHDPQML---------- 240
Query: 354 MPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDA 413
S S+S + Q H + K K L R + +
Sbjct: 241 ---------------SLSHSQVHITQT--------PHVFYECKPMEKDRVLVRIIEIENP 277
Query: 414 QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473
+ I F N + L+ G A EL DL + R LKK +NG+VR LV +++
Sbjct: 278 ASAIIFCNTKSNVHYVTAVLQGFGYNADELSADLSQAKREQVLKKLRNGQVRFLVATDVA 337
Query: 474 ARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLA 533
ARG+D+ + VV + P D Y HRAGRTGR G G V+S+ + + + ++ K
Sbjct: 338 ARGIDIPDLSHVVLYEPPEDHESYIHRAGRTGRAGASGEVISLVDIMQKLELGRIAKHYQ 397
Query: 534 VPIQ 537
+ +Q
Sbjct: 398 IDMQ 401
>gi|59801077|ref|YP_207789.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
NCCP11945]
gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
gi|385335861|ref|YP_005889808.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
TCDC-NG08107]
gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
NCCP11945]
gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 462
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 193/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++AP+REL Q+ + +VGG +
Sbjct: 65 LTKRSEKPGKGP---------RALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P A+RQT++ SAT +V + AR D +++ + V
Sbjct: 174 IVE-------ATP----------ADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DGQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 455
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 202/425 (47%), Gaps = 59/425 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELG+ + + L + +Q+ +P L+ D++ Q+ TG GKTL + +P+L
Sbjct: 9 TFTELGVAQEITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLD 68
Query: 171 KVGPLKD-KSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ D + +G A+IV P+REL +Q+ ++ + + V + GG
Sbjct: 69 RIFDDADIEELDGTPR--------ALIVVPTRELCVQVGEDLTRA-AVNLPVRVTTIYGG 119
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
QE+AL K+ +VVGTPGR+ ++ G+L R LVLDE DE+L F A+
Sbjct: 120 TPYEEQEKAL-KDGTDLVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIE 178
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I+ + AE QT++ SAT+P +++ AR + + P+ ++A+
Sbjct: 179 KIIA-----------------GITAEHQTMLFSATMPDAILGLARGFMNKPVHIRAE--- 218
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
MSG + +N KQ K + KV + R +
Sbjct: 219 ----------------MSGEA-ETNATTKQV------VFKSHRM-----DKVAVISRVLQ 250
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A I F+ R + L G + A +HGD+ + AR +L+ F++G V +LV
Sbjct: 251 ARGRGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVA 310
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ + V+N P D + Y HR GRTGR G GT V++ E+ K +
Sbjct: 311 TDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDELPKWKLIN 370
Query: 530 KQLAV 534
+L +
Sbjct: 371 DELGL 375
>gi|253702296|ref|YP_003023485.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251777146|gb|ACT19727.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 381
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 208/425 (48%), Gaps = 65/425 (15%)
Query: 111 SFLELGLPPLLLERL-EREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF LGL P LL + E+ F P +QS IP++LK D++ + TGSGKT +++LP+L
Sbjct: 2 SFASLGLHPELLSAIAEQPEFKRPYPIQSEVIPAVLKGRDLIAIAKTGSGKTASFILPLL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ--LV 227
+ +G ++G++ + A+++ P+REL QI E+ K LG + V+ +
Sbjct: 62 QLI--------HGQ-DAGERRRLRALVLVPTRELAAQI-EEVAKQLGSHLEPRVKTGAVF 111
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + Q L+ + +++ TPGR+ E+ A + LVLDE D L + +F++
Sbjct: 112 GGVAINPQMIQLKGIE--LLIATPGRLLELVAKNSVKLSSVATLVLDEADRLYAEDFQDE 169
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
M +I+ + A+RQ ++ SAT+P V R A S DP+ ++
Sbjct: 170 MQQILA-----------------LLPAKRQNLLFSATIPPEVERLAASLLSDPMRIE--- 209
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ +S + L ++Q Y V K LR
Sbjct: 210 ------------------IEAKASETELISQQ-----------IYLVDS-SRKGPLLRYL 239
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + D + V+ F ++ ++ + KL A G+ A+ H + + R+ L KFK GE+RVL
Sbjct: 240 IKSGDWKQVLVFTSSQKRADNVTRKLVANGISASTFHSGMSQGGRTAALAKFKTGELRVL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +L++RG+DV VVN +LP I Y HR GRTGR G V++ ++ K
Sbjct: 300 VATDLASRGIDVQSLPHVVNYELPRSPIDYQHRIGRTGRAETAGVAVTLLCPEDLAHFKV 359
Query: 528 MQKQL 532
++K+L
Sbjct: 360 IEKRL 364
>gi|449134958|ref|ZP_21770422.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
europaea 6C]
gi|448886437|gb|EMB16844.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
europaea 6C]
Length = 489
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 201/432 (46%), Gaps = 57/432 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F +LGL LL+ LE+ G+ PT +Q+ +IP IL +DV+ + TG+GKT A+ LPIL
Sbjct: 6 NKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPIL 65
Query: 170 SKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
+ + + S G G + I ++++P+REL QI + + G + +
Sbjct: 66 QIMWEDDQERREPSKGRGRRPGRRPIRTLVLSPTRELSAQIEANFR-IYGKKTRLRSTVI 124
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG N++ Q L+ +V TPGR+ ++ G + + LVLDE D +L F
Sbjct: 125 FGGVNQNPQVRELQSGVDTLVA-TPGRLLDLVNQGFIDLNDVEILVLDEADHMLDMGFLP 183
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI++++ R +RQ ++ SAT+P + + A +P+ +Q
Sbjct: 184 DVKRILKYLPR-----------------DRQNLLFSATMPGPIRKLADEILVEPVTIQ-- 224
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ P + P S QAD+ P L ++ TK R
Sbjct: 225 -IAPQK------------PTVERIEQSICFVAQADK---PRLLSHFVETKATGSTLVFTR 268
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
H DA +L G+KAA +HG+ + R TL KFKN E+ V
Sbjct: 269 TKHGADA---------------VARRLVKAGVKAAAIHGNKTQANRVRTLNKFKNDELDV 313
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC--EEPEVFV 524
LV +++ARG+D+ V+N D P Y HR GRTGR GR G V C E + F+
Sbjct: 314 LVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFCGGHETKFFI 373
Query: 525 VKKMQKQLAVPI 536
+ + +L +P+
Sbjct: 374 AIEREIKLQIPV 385
>gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
Length = 482
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 198/435 (45%), Gaps = 65/435 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSHLGLSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q+ + K G K V L+G
Sbjct: 62 LL------------EKGRARARMPRTLILEPTRELAAQVKEQFDK-YGAGQKLNVALLIG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q+ L + +++ TPGR+ + + G L G LV+DE D +L F +
Sbjct: 109 GVSFGDQDLKLTRGV-DVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI + V P + RQT+ +AT+P + R ++ H+P ++
Sbjct: 168 ERICKLV----------PFT-------RQTLFFTATMPNEIRRVTDAFLHNPQRIEV--- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S PAT A QS C + K + LR +
Sbjct: 208 ----SRPAT------------------TAATVTQS------QVSCSREPHEKRELLRHLL 239
Query: 409 -HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
A + + I F N R + L+ G LHGD+ + AR+ +L +F+ GE+ +L
Sbjct: 240 REAKELKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V ++++ARGLD+ E V+N D+P Y HR GRTGR GR GT ++I + +
Sbjct: 300 VASDVAARGLDIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIVCPADFKSLAA 359
Query: 528 MQKQLAVPIQACEFT 542
++K PI E +
Sbjct: 360 IEKLTGQPIPKAELS 374
>gi|417240251|ref|ZP_12036687.1| ATP-independent RNA helicase DbpA [Escherichia coli 9.0111]
gi|386212952|gb|EII23392.1| ATP-independent RNA helicase DbpA [Escherichia coli 9.0111]
Length = 457
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQVAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|358386646|gb|EHK24241.1| hypothetical protein TRIVIDRAFT_31450 [Trichoderma virens Gv29-8]
Length = 479
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/428 (30%), Positives = 196/428 (45%), Gaps = 65/428 (15%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P +F ELG+ L E E + PT +Q+ +IP L+ DV+ + TGSGKT A+
Sbjct: 52 PEEPKTFKELGIVDSLCEACESLNYKHPTSIQAKSIPVALQGRDVIGLAETGSGKTAAFA 111
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
LPIL + K + +++AP+REL QI + + L G
Sbjct: 112 LPILQAL-------------LEKPQPLFGLVLAPTRELAAQIGQSFEAL-GALISLRCAV 157
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNF 284
+VGG + Q AL K KP I+V TPGR+ + + ++LV+DE D LL +F
Sbjct: 158 IVGGLDMVPQAIALGK-KPHIIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDF 216
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
++ +I++ + R ER+T + SAT+ V R+ DP+ V
Sbjct: 217 GPSIDKILKFIPR-----------------ERRTYLFSATLSSKVESLQRASLRDPVRV- 258
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
S SSS Q++ L+HY V + K L
Sbjct: 259 ----------------------SVSSSKY--------QTVSTLLQHYIFVPH-KRKDTYL 287
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
V+ +++I F + + L G A LHG L + +R L KFK G
Sbjct: 288 IYLVNEFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFKGGSR 347
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
+LV +++ARGLD+ D+V+NLDLP DS Y HR GRT R G+ G +SI + +V +
Sbjct: 348 EILVATDVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAISIVTQYDVEI 407
Query: 525 VKKMQKQL 532
++++ L
Sbjct: 408 YQRIEAAL 415
>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
Length = 565
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 193/412 (46%), Gaps = 56/412 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A SF + G+ + + L G P +Q +P L D++ Q+ TG+GKTL + LP
Sbjct: 13 AKSFADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPT 72
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ +V D+ G + +A+I+ P+REL +Q+ ++ + V L G
Sbjct: 73 IQRVVGRDDE---GWADLEYPGAPQALILVPTRELAIQVGEDLA-IAAKLRNARVATLYG 128
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q E LR+ + VGTPGRI ++ G L+ + +VLDE DE+L F+ ++
Sbjct: 129 GVPIEPQAELLRRGL-EVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSV 187
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I+ ++ P+ +RQ+++ SAT+P VI AR + P+ + A +
Sbjct: 188 EKILSYL----------PE-------DRQSMLFSATMPGPVIAMARQYMTKPMRISAAD- 229
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH--KVDTLRR 406
P S + ++++ V + H K + + R
Sbjct: 230 ----------------PEDASKTKASIR---------------QVVYRAHHLDKDEMIGR 258
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ A + F R +L RG AA LHGDL ++AR LK F+ G+V +
Sbjct: 259 ILRATGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDI 318
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
LV +++ARG+DV + V+N +P D Y HR GRTGR G GT V++ +
Sbjct: 319 LVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVD 370
>gi|238927921|ref|ZP_04659681.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
43531]
gi|238884254|gb|EEQ47892.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
43531]
Length = 426
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 202/428 (47%), Gaps = 69/428 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L L+++G PT VQ AIP + DV+ Q+ TG+GKTLAYLLP+L++
Sbjct: 4 FDQLGISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLAR 63
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P G + +A+++AP+REL +QI L P + GGA+
Sbjct: 64 IKP--------QGAAA-----QALVIAPTRELAIQIEHVAASLAEPLG-IGTTVIYGGAD 109
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ+E LR++ P +V+GTPGR+ + G L +VLDE DE+L F
Sbjct: 110 IERQKEKLRRS-PQLVIGTPGRLLDHVRRGTLALGRVNKVVLDEADEMLKMGF------- 161
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+E V GA ++ + AL SAT+P ++R + + +P ++
Sbjct: 162 IEDVETLLGAAAQDYQLAL----------FSATMPERIVRLTKRFMTNPAHIRLAG---- 207
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E++ + P+S L A +++ P L +C TK
Sbjct: 208 ETVTLAAIEQVVIPVSAGDKLDRLCASINEEA--PYLAMVFCATK--------------- 250
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
TR L + +L RG L GDL + RS L++F++ ++++L +
Sbjct: 251 ---------ERTRAL---MMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATD 298
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ V N DLP Y HR GRTGR G +G +++ + ++KM+
Sbjct: 299 IAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEAA 358
Query: 532 LAVPIQAC 539
L +AC
Sbjct: 359 L----KAC 362
>gi|119191710|ref|XP_001246461.1| hypothetical protein CIMG_00232 [Coccidioides immitis RS]
gi|118575177|sp|Q1EB31.1|DBP4_COCIM RecName: Full=ATP-dependent RNA helicase DBP4
gi|392864308|gb|EAS34862.2| ATP-dependent RNA helicase DBP4 [Coccidioides immitis RS]
Length = 806
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/432 (29%), Positives = 200/432 (46%), Gaps = 63/432 (14%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
A SF EL L L+ L F T++QS A+P +K D++ + TGSGKTLA+L+P+
Sbjct: 47 AESFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPV 106
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L + + +G G A+I++P+REL +QI ++K+ G + ++G
Sbjct: 107 LENLYRKQWTEYDGLG---------ALILSPTRELAIQIFEVLRKI-GRYHTFSAGLVIG 156
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
G +S QEE R + I+V TPGR+ + + T + LVLDE D ++ F+
Sbjct: 157 G--KSLQEEQERLGRMNILVCTPGRMLQHMDQTAAFDTAHIQMLVLDEADRIMDMGFQST 214
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ IVEH+ PK ERQT++ SAT Q K
Sbjct: 215 VDAIVEHL----------PK-------ERQTMLFSAT-------------------QTKK 238
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
V L + P +S + SS+ P +L+ +Y VT L K+DTL
Sbjct: 239 VSDLARLSLRDPEYISVHEAASSAT------------PASLQQHYVVTPLPEKLDTLWSF 286
Query: 408 VHALDAQTVIAFMNNTRQLK--DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ ++ F ++++Q++ F+ G+ LHG + AR KF +
Sbjct: 287 IRNTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAKYS 346
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
L + +++ARGLD D V+ LD P D+ Y HR GRT R R G V + E +
Sbjct: 347 CLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEEGM 406
Query: 526 KKMQKQLAVPIQ 537
K +Q +PI+
Sbjct: 407 LKRLEQKKIPIE 418
>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
gi|118595827|sp|Q2H1Q8.1|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
Length = 493
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 193/433 (44%), Gaps = 65/433 (15%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
ES A +F +LG+ L + + G+ PT +Q +IP L++ D++ + TGSGKT
Sbjct: 58 ESEEPAPKTFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTG 117
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
A+ LPIL L DK + A+++AP+REL QI + + L G
Sbjct: 118 AFALPILQA---LLDKPQP----------LFALVLAPTRELAAQIAQSFEAL-GSLISLR 163
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLS 281
++GG + +Q AL K KP +VV TPGR+ + + R+LV+DE D LL
Sbjct: 164 CALILGGLDMVQQAIALGK-KPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLD 222
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
+F + +I++ + R ER+T + SAT+ V R+ DPL
Sbjct: 223 MDFGPILDKILKFLPR-----------------ERRTFLFSATMSSKVESLQRACLRDPL 265
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
V S S+S Q L Y HK
Sbjct: 266 KV-------------------------SISSSKYQTVST-------LVQNYVFIPHTHKD 293
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
L + QT+I F + + L GM A LHG L + AR L KF+
Sbjct: 294 TYLIYLCNEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRA 353
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
G +LV +++ARGLD+ D V+NLDLP DS Y HR GRT R GR G +S + +
Sbjct: 354 GSRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYD 413
Query: 522 VFVVKKMQKQLAV 534
+ + +++ L
Sbjct: 414 LELWLRIEAALGT 426
>gi|156083731|ref|XP_001609349.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
gi|154796600|gb|EDO05781.1| DEAD/DEAH box helicase [Babesia bovis]
Length = 609
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 193/421 (45%), Gaps = 57/421 (13%)
Query: 113 LELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS-- 170
E G+ LL+ + R + PT +Q +IP I+ D++ + TGSGKT A+LLPI +
Sbjct: 152 FENGIHELLMVNILRVNYTKPTPIQKHSIPVIMAGRDLMACAQTGSGKTAAFLLPICTAM 211
Query: 171 -KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
K GP + + S + + ++++P+REL MQ E +K + + +AV L GG
Sbjct: 212 LKTGPPASRPMQSSYHSRQALPV-CLVLSPTRELAMQTFTEARKFIYNTGIRAV-VLYGG 269
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
RQ L + I V TPGR+ +I ++ H +LVLDE D +L F +
Sbjct: 270 GEVRRQLYELERGC-DICVATPGRLTDILERNRIGLHCVSYLVLDEADRMLDMGFAPQIR 328
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
++VEH + P+E RQT+M SAT P + + AR + D L + V
Sbjct: 329 QVVEH-----SSMPQE---------GRQTVMFSATFPKEIQQLARDFLRDYLYLAVGRV- 373
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAK--QADQSLPPALKHYYCVTKLQHKVDTLRRC 407
S+N ++ + ADQ KL + V LR
Sbjct: 374 -------------------GSTNEFIRQRLLYADQE-----------QKLHYLVKLLREN 403
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ L V+ F+ R+ L A +HGD + R L+ FK GE +L
Sbjct: 404 TNGL----VLIFVETKRRADMIESYLLKENFMAVNIHGDRSQQDREEALRLFKTGERPIL 459
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+ V+N DLP + Y HR GRTGR G G S+ E + ++K
Sbjct: 460 VATDVAARGLDINNITHVINCDLPANIDDYVHRIGRTGRAGNVGVATSLVSEKDRSILKD 519
Query: 528 M 528
+
Sbjct: 520 L 520
>gi|375130530|ref|YP_004992630.1| hypothetical protein [Vibrio furnissii NCTC 11218]
gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
Length = 536
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/427 (29%), Positives = 206/427 (48%), Gaps = 70/427 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ ++ +G+ P+ +Q+ AIP++L+ DV+ + TG+GKT + LPIL +
Sbjct: 3 FTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI---VREIKKLLGPSDKKAVQQLVG 228
+ G + + A+I+ P+REL Q+ V + L S AV + G
Sbjct: 63 L---------TGGPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSS--AV--VFG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q LRK ++V TPGR+ ++ + LVLDE D +L F +
Sbjct: 110 GVKINPQMLRLRKGAD-VLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I+E + PK+ RQ ++ SAT + A+ +DP+ +
Sbjct: 169 RKILELL----------PKN-------RQNLLFSATFSDEIRALAKGLVNDPVEI----- 206
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
S S +N AK +Q + PA ++ K L + +
Sbjct: 207 --------------------SVSPANSTAKTVEQCVYPA--------DVKKKAPMLVKLI 238
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ Q V+ F R L G+KAA +HG+ + AR+T L +FK+GE+RVLV
Sbjct: 239 KDGNWQQVLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLV 298
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-IC--EEPEVFVV 525
+++ARG+D+ + VVN +LP + Y HR GRTGR G G +S +C E P++F +
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFGI 358
Query: 526 KKMQKQL 532
+++ +Q+
Sbjct: 359 ERLIQQV 365
>gi|452977644|gb|EME77410.1| hypothetical protein MYCFIDRAFT_83332 [Pseudocercospora fijiensis
CIRAD86]
Length = 498
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/426 (29%), Positives = 193/426 (45%), Gaps = 65/426 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +F +LG+ L + + F PT +Q AIP L+ D++ + TGSGKT A+ LP
Sbjct: 72 AEKTFADLGVREELCDACDSLNFKRPTAIQREAIPIALEGKDIIGLAETGSGKTAAFALP 131
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL L DK G +I+AP+REL QI ++ + L G +V
Sbjct: 132 ILQ---ALLDKPQPLFG----------LILAPTRELAYQISQQFEAL-GSLISVRCAVIV 177
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + Q AL K KP IVV TPGR+ + + ++LV+DE D LL +F
Sbjct: 178 GGMDMVPQAVALAK-KPHIVVATPGRLLDHMENTKGFSVKHFKYLVMDEADRLLDLDFGP 236
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I++ + R +R+T++ SAT+ + R+ +P+ V
Sbjct: 237 ILDKILQELNR-----------------DRRTMLFSATMSTKLNSLTRAALQNPVRVS-- 277
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+S SS + Q +P K Y V L
Sbjct: 278 -------------------ISESSYQTVKNLMQRYMFIPHKYKDIYLVYLLDE------- 311
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+T I F + + + L A G A LHG + + AR L KF+ G +
Sbjct: 312 ----FAGKTCIIFTRTIHETQRIAYVLRALGRSAIPLHGQMNQSARLGALNKFRGGSRDI 367
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLD+ DLV+N DLP DS Y HR GRT R G+ G +SI + ++ + +
Sbjct: 368 LVATDVAARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISIVTQYDIEIYQ 427
Query: 527 KMQKQL 532
+++K L
Sbjct: 428 RIEKAL 433
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 189/416 (45%), Gaps = 65/416 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A SF ELGL L E + G+ PT +Q+ AIP L+ D++ + TGSGKT A+ LP
Sbjct: 50 APKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALP 109
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL L DK S+ G +++AP+REL QI + + L G + LV
Sbjct: 110 ILQ---ALMDKPSSFFG----------LVLAPTRELAYQISQAFEGL-GSTISVRSTVLV 155
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + Q AL K KP I+V TPGR+ + + ++LV+DE D LL +F
Sbjct: 156 GGMDMVSQSIALGK-KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGP 214
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I++ + R ER+T + SAT+ V R+ +PL V
Sbjct: 215 ILDKILKVLPR-----------------ERRTYLFSATMSSKVESLQRASLQNPLRV--- 254
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ S+S Q L+ Y +HK L
Sbjct: 255 ----------------------AVSSSKFQTVST-------LQQSYIFIPHKHKDLYLVY 285
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
++ Q+ I F + + F L G A LHG L + AR L KF++ +
Sbjct: 286 LLNEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDI 345
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
LV +++ARGLD+ D+V+N DLP DS + HR GRT R G+ G +S + +V
Sbjct: 346 LVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDV 401
>gi|417204782|ref|ZP_12018964.1| ATP-independent RNA helicase DbpA [Escherichia coli JB1-95]
gi|419202889|ref|ZP_13746095.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8B]
gi|378052985|gb|EHW15286.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC8B]
gi|386198272|gb|EIH92457.1| ATP-independent RNA helicase DbpA [Escherichia coli JB1-95]
Length = 457
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+A +P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAVLPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|357126556|ref|XP_003564953.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like
[Brachypodium distachyon]
Length = 496
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/448 (28%), Positives = 204/448 (45%), Gaps = 62/448 (13%)
Query: 71 KKHSPIEIPKAKVKAVRSDGIKAAGVKKSLEIE--SAPFAANSFLELGLPPLLLERLERE 128
+K+ +E+P V + +D ++A ++ + ++ P F ++G P +L+ + +
Sbjct: 54 EKNFYVEVPS--VAGMTADEVEAYRRRREITVDGHDVPKPVCDFRDVGFPEYVLQEITKA 111
Query: 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188
GF PT +QS P LK D++ + TGSGKTLAYLLP + V + + G+G
Sbjct: 112 GFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVN-AQPILAPGDGPI-- 168
Query: 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
+++AP+REL +QI +E K G S K + GG + Q L+K IV+
Sbjct: 169 -----VLVLAPTRELAVQIQQETTK-FGASSKIKSTCIYGGVPKGPQVRDLQKGV-EIVI 221
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGR+ ++ + + +LVLDE D +L F + +IV +
Sbjct: 222 ATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQI------------- 268
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSG 368
R +RQT+ SAT P V + AR++ DP K +I E + A
Sbjct: 269 ----RPDRQTLYWSATWPKEVEQLARNFLFDPY----KVIIGSEELKA------------ 308
Query: 369 SSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428
N Q + L + K+ V L+ +D ++ FM+ +
Sbjct: 309 -----NHAICQYVEILSESQKYNKLVNLLE----------DIMDGSRILIFMDTKKGCDQ 353
Query: 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488
+L G A +HGD + R L +FK+G+ ++ +++ARGLDV + V+N
Sbjct: 354 ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINY 413
Query: 489 DLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
D P Y HR GRTGR G GT +
Sbjct: 414 DFPGSLEDYVHRIGRTGRAGATGTAYTF 441
>gi|296314358|ref|ZP_06864299.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
43768]
gi|296838913|gb|EFH22851.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
43768]
Length = 457
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 195/413 (47%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GVNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + PK +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQML----------PK-------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHIPQVIVFCKTKQSVDQVTRDLIRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++PT Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium
dendrobatidis JAM81]
Length = 483
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 190/415 (45%), Gaps = 61/415 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F E P +L+ +E GF+ PT +QS P L DVV + TGSGKTLAY LP +
Sbjct: 56 TFAEASFPSYVLKEVESLGFSAPTSIQSQGWPMALSGRDVVGVAETGSGKTLAYTLPSIV 115
Query: 171 KVG--PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ PL G+G +I+AP+REL +QI E K G S + L G
Sbjct: 116 HINAQPLL---KPGDGPI-------VLILAPTRELAIQIQVECNKF-GSSSRIKNTCLYG 164
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q L + I + TPGR+ ++ +GK + +LVLDE D +L F +
Sbjct: 165 GVPKGPQMRDLERGI-EICIATPGRLIDMLESGKTNLKRVTYLVLDEADRMLDMGFEPQI 223
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+IV+ + R +RQT+M SAT P V AR + + + V
Sbjct: 224 RKIVDQI-----------------RPDRQTLMWSATWPKEVQALARDYQKEFIQVNV--- 263
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
G M S+S++ Q + + P+ + + KL L +
Sbjct: 264 ---------------GSMELSASHNITQIVE----ICPSHDKRHRLYKL------LEDIM 298
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D +T+I F R D L G A +HGD + R +++FK+G+ +L+
Sbjct: 299 SNADQKTII-FTGTKRTADDITRDLRHDGFPALAIHGDKKQQERDWVMQEFKSGKTPILI 357
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF 523
+++ARGLDV + V+N D P + Y HR GRTGR +GT ++ P+ F
Sbjct: 358 ATDVAARGLDVKDVKFVINFDFPNNIEDYVHRIGRTGRANNKGTAYTLF-SPDNF 411
>gi|325090197|gb|EGC43507.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H88]
Length = 539
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 189/438 (43%), Gaps = 70/438 (15%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P +SF LGL P L+ L PT +Q A IP ILK D + S TGSGKT+A+
Sbjct: 105 PSDISSFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFA 164
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
PIL K + I AVI+ P+REL +QI +IK + P K +
Sbjct: 165 APILQKW-------------AEDPFGIFAVILTPTRELALQIFEQIKAISAPQSLKPI-- 209
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLS 281
L+ G R + +P IV+ TPGR+A+ I+++G G R +V DE D LL+
Sbjct: 210 LITGGTEMRPQAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLA 269
Query: 282 FNFREAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVPFSVIRAARSW 336
SG P S L RQT++ +ATV
Sbjct: 270 -----------------SGPGSMLPDVETCLSTLPPSTARQTLLFTATV----------- 301
Query: 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK 396
V L+SMP P N S N S+PP LK Y
Sbjct: 302 --------TPEVRALKSMPR--PANKLPIFVTEVSTEN------KASIPPTLKQTYLQVP 345
Query: 397 LQHKVDTLRRCVH--ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454
L H+ L + A + I F N T+ L G + LH L + R+
Sbjct: 346 LTHREAFLHTLISTAANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTA 405
Query: 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
L +F+ R+LV +++ARGLD+ LV+N D+P + Y HR GRT R GR G V
Sbjct: 406 NLSRFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAV 465
Query: 515 SICEEPEVFVVKKMQKQL 532
++ + +V +V ++ ++
Sbjct: 466 TLVGQRDVQLVLAIEDRV 483
>gi|88803270|ref|ZP_01118796.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88780836|gb|EAR12015.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 609
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/442 (28%), Positives = 206/442 (46%), Gaps = 70/442 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNH-DVVIQSYTGSGKTLAYLLPIL 169
+FLELGL + + L G+ PT +Q AIP I+ + D+ + TG+GKT A+ LPIL
Sbjct: 3 TFLELGLKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLPIL 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ S++GN ++A+I++P+REL +QI IK V + GG
Sbjct: 63 ELL-----DSNSGN--------VQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
++ Q +L++ IVVGTPGR ++ L ++LVLDE DE+L+ F++ +
Sbjct: 110 SSMEDQIRSLKRG-SQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELD 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+++E A P +QT++ SAT P V A+++ P+
Sbjct: 169 KVLE-------ATP----------DTKQTLLFSATFPKEVESIAKNYMTKPV-------- 203
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ + Q +Q YY VT+ + + L+R
Sbjct: 204 ------------------------EITSGQKNQGADSVSHEYYSVTE-RTRYPALKRIAD 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F R+ ++ L G A LHGDL + R + + KF+ +++LV
Sbjct: 239 LNPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV E V+N LP +Y HR+GRTGR G G + + E ++ ++
Sbjct: 299 TDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPIE 358
Query: 530 KQLAVPIQACEFTEGRLVIGKE 551
K I +FTE ++ GK+
Sbjct: 359 K-----IIQKKFTEAKVPSGKD 375
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 189/416 (45%), Gaps = 65/416 (15%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A SF ELGL L E + G+ PT +Q+ AIP L+ D++ + TGSGKT A+ LP
Sbjct: 50 APKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALP 109
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL L DK S+ G +++AP+REL QI + + L G + LV
Sbjct: 110 ILQ---ALMDKPSSFFG----------LVLAPTRELAYQISQAFEGL-GSTISVRSTVLV 155
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + Q AL K KP I+V TPGR+ + + ++LV+DE D LL +F
Sbjct: 156 GGMDMVSQSIALGK-KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGP 214
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I++ + R ER+T + SAT+ V R+ +PL V
Sbjct: 215 ILDKILKVLPR-----------------ERRTYLFSATMSSKVESLQRASLQNPLRV--- 254
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ S+S Q L+ Y +HK L
Sbjct: 255 ----------------------AVSSSKFQTVST-------LQQSYIFIPHKHKDLYLVY 285
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
++ Q+ I F + + F L G A LHG L + AR L KF++ +
Sbjct: 286 LLNEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDI 345
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
LV +++ARGLD+ D+V+N DLP DS + HR GRT R G+ G +S + +V
Sbjct: 346 LVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDV 401
>gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
Length = 477
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 198/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G++ P+ +Q AIP++L+ DV+ + TG+GKT + LPIL +
Sbjct: 3 FTSLGLSAPILKAIEEQGYDKPSPIQEQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ NG K + A+++ P+REL Q+ + K + Q + GG
Sbjct: 63 LD---------NGTRVKGNHVRALVLTPTRELAAQVQENVFKY-SRYQRLTSQVIFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q LRK ++V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 ANPQMMKLRKG-CDVLVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ AL + A+RQ ++ SAT + A+ +DP+ V
Sbjct: 172 L----------------AL-LPAKRQNLLFSATFSPEIRELAKGLVNDPVEV-------- 206
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S S N A +QS+ PA K + K L + +
Sbjct: 207 -----------------SVSKENSTAVTIEQSIYPADK--------RKKAPMLVKMIKDG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D + + F F L G+ AA +HG+ + AR+ L FK+G+V+VLV +
Sbjct: 242 DWKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVKVLVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP S Y HR GRTGR G G ++V E E+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAYSLVEAAEASELFGIERL 361
Query: 529 QKQL 532
+Q+
Sbjct: 362 IQQV 365
>gi|414591850|tpg|DAA42421.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 1298
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 189/420 (45%), Gaps = 65/420 (15%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E+ P +F G PP +L + GF+ PT +Q+ P L+N D+V + TGSGKTL
Sbjct: 593 ENVPAPFMTFEATGFPPEILREIHAAGFSNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL 652
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
YL+P + + + N G +++AP+REL QI E+ K G S + +
Sbjct: 653 GYLIPAFIHL-----RRCHNNPMLGPTV----LVLAPTRELASQIQAEVVKF-GQSSRVS 702
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GG ++ Q L + IVV TPGR+ +I +++ H LVLDE D +L
Sbjct: 703 CTCLYGGTSKVPQLRELERGA-DIVVATPGRLNDILEMKRINLHQVSLLVLDEADRMLDM 761
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +IV+ + P + RQT+M +AT P V + A DP+
Sbjct: 762 GFEPQIRKIVDEL----------PNA-------RQTLMYTATWPKEVTKIAGDLLRDPVQ 804
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V N+ ++ + A N Q + +PP +D
Sbjct: 805 V---NIGSIDELVA-----------------NKSITQYVEVVPP--------------MD 830
Query: 403 TLRRCVHALDAQ---TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
RR L Q + I +T+++ D + + R A +HGD + R L +F
Sbjct: 831 KQRRLEQILGDQERGSKIIIFCSTKKMCDQLARGIGRNFNAVSIHGDKSQAERDNVLNQF 890
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ G VLV +++ARGLD+ + +V+N D PT Y HR GRTGR G G + E
Sbjct: 891 RTGRASVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSE 950
>gi|419828104|ref|ZP_14351595.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419833027|ref|ZP_14356488.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|422918796|ref|ZP_16953096.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|423780048|ref|ZP_17714132.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423840903|ref|ZP_17717879.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423867757|ref|ZP_17721551.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423999359|ref|ZP_17742552.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|424011378|ref|ZP_17754246.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|424021201|ref|ZP_17760971.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|424626417|ref|ZP_18064867.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|424627308|ref|ZP_18065672.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|424631108|ref|ZP_18069331.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|424638028|ref|ZP_18076025.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|424641924|ref|ZP_18079796.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|424646441|ref|ZP_18084169.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|443525237|ref|ZP_21091431.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
gi|341634020|gb|EGS58788.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|408009585|gb|EKG47486.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|408020876|gb|EKG58157.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|408020934|gb|EKG58214.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|408028856|gb|EKG65711.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|408040724|gb|EKG76888.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|408060896|gb|EKG95498.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|408623177|gb|EKK96131.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408638465|gb|EKL10363.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408647380|gb|EKL18908.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408647831|gb|EKL19284.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408650351|gb|EKL21626.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408849483|gb|EKL89499.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|408864773|gb|EKM04189.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|408870749|gb|EKM10017.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|443456352|gb|ELT20025.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
Length = 467
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEVPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
Length = 462
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 193/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++AP+REL Q+ + +VGG +
Sbjct: 65 LTKRSEKPGKGP---------RALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P A+RQT++ SAT +V + AR D +++ + V
Sbjct: 174 IVE-------ATP----------ADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DGQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|198413153|ref|XP_002124718.1| PREDICTED: similar to GE24123 [Ciona intestinalis]
Length = 573
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 204/454 (44%), Gaps = 66/454 (14%)
Query: 86 VRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL 145
R++GI G E P F EL + +L + FNVPT +QS P+ L
Sbjct: 129 YRTNGITIGG-------EKVPRPVLDFSELQFSDHIDSKLRQSNFNVPTAIQSTGWPATL 181
Query: 146 KNHDVVIQSYTGSGKTLAYLLPILSKVG---PLKDKSSNGNGESGKKTDIEAVIVAPSRE 202
DV+ + TGSGKTL+++LP L + PL G GE A+++ P+RE
Sbjct: 182 SGRDVIGIAQTGSGKTLSFILPALIHIQAQRPL------GRGEGPI-----ALVMCPTRE 230
Query: 203 LGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK 262
L +Q R + GP + A GG++R+ Q + + +I+V TPGR+ + G+
Sbjct: 231 LAVQCERVANQFAGPFIRTAC--AYGGSSRNIQLDKIGAG-CSILVATPGRLMDFLQHGE 287
Query: 263 LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVS 322
++ C +LVLDE D +L F + +I+E + R +RQ M S
Sbjct: 288 VNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-----------------RPDRQVTMWS 330
Query: 323 ATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ 382
AT P S IR AK+ I +S G+ S ++ N+Q K A
Sbjct: 331 ATWP-SEIRQL-----------AKDFISTKSATHIKVGS-----SDLQASENIQQKFAIC 373
Query: 383 SLPPALKHYY-CVTKLQH-KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKA 440
P K + + +L++ D + L F N +L G+++
Sbjct: 374 HSPDKFKQFKEIIIELKNANKDQFSQFPKTL------VFCNTKATCDRLSQQLRNAGLRS 427
Query: 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
+HGD + R + L F+ G +L+ +++ARGLD+ + V+N D P Y HR
Sbjct: 428 NAIHGDKTQSQRDSVLNNFRRGRSNILIATDVAARGLDINDIQYVINFDTPPTCTDYIHR 487
Query: 501 AGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534
GRTGR G++GT ++ E +VK + L V
Sbjct: 488 IGRTGRAGKQGTSYTLLTEENGAIVKDLISSLEV 521
>gi|331657397|ref|ZP_08358359.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
gi|432898216|ref|ZP_20109047.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE192]
gi|433028317|ref|ZP_20216183.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE109]
gi|331055645|gb|EGI27654.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
gi|431428943|gb|ELH10884.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE192]
gi|431544514|gb|ELI19334.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE109]
Length = 457
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
D S + +++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 DVS---------LFQTQGLVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|357013855|ref|ZP_09078854.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 433
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/423 (30%), Positives = 199/423 (47%), Gaps = 65/423 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L P +L+ L +E + PT +Q AIP +L D+ + TG+GKT A+LLPI+
Sbjct: 2 TFEQLKLIPPILKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK---KLLGPSDKKAVQQLV 227
+ S+ SGK+ I ++I+ P+REL +QI K + L + + AV +V
Sbjct: 62 LL------SAQQRRPSGKRV-IRSLILTPTRELAIQISDNFKAYGRFL--NLRSAV--IV 110
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG ++ QE+AL + I++ TPGR+ ++ G + LVLDE D +L F
Sbjct: 111 GGVSQKAQEQALEQGM-DILIATPGRLIDLMNQGFADLRHVQILVLDEADRMLDMGFIHD 169
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
M RI+ + A+RQT+ SAT+P + S +P+ ++
Sbjct: 170 MRRIIAK-----------------LPAKRQTLFFSATMPPEITSLVDSLLTNPMKIE--- 209
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ P+ S A++ QSL Y V K +K+ L
Sbjct: 210 ITPVSST----------------------AERIKQSL-------YFVDK-PNKLPLLIDL 239
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ ++ + F V L + A +HGD + AR L FK G R+L
Sbjct: 240 LQDKSIESALVFTRTKHGADRLVKGLTKATITAQAIHGDKSQNARQAALNNFKQGVTRML 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARG+D+ E V+N +LP Y HR GRTGR G G +S CE E+ +K
Sbjct: 300 VATDIAARGIDIEELSHVINYNLPNIPETYVHRIGRTGRAGLSGIAISFCEYEEIPYLKD 359
Query: 528 MQK 530
++K
Sbjct: 360 IEK 362
>gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 462
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 193/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++AP+REL Q+ + +VGG +
Sbjct: 65 LTKRSEKPGKGP---------RALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P A+RQT++ SAT +V + AR D +++ + V
Sbjct: 174 IVE-------ATP----------ADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DGQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
Length = 462
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 193/422 (45%), Gaps = 62/422 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +L L +L + EG+ PT +Q+ AIP L+ D++ + TGSGKT A+LLP L +
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQR 64
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +K G A+++AP+REL Q+ + +VGG +
Sbjct: 65 LTKRSEKPGKGP---------RALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTS 115
Query: 232 RSRQEEALRKNKPA-IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q AL +KP ++V TPGR+ ++ +GK+ L+LDE D +L F + +
Sbjct: 116 FGYQTRAL--SKPVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIET 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IVE A P A+RQT++ SAT +V + AR D +++ + V
Sbjct: 174 IVE-------ATP----------ADRQTLLFSATWDGAVGKLARKLTKDSEIIEVERV-- 214
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ Q K +Q L YC ++HK L +
Sbjct: 215 -----------------------DGQGKIEEQLL-------YC-DDMRHKNRLLDHILRD 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ + F + + +L +G A LHGD+ + R+ TL + G ++LV
Sbjct: 244 ANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVAT 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ V+N DLP + Y HR GRTGR GR G ++ E E V K++K
Sbjct: 304 DVAARGIDIPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEK 363
Query: 531 QL 532
+
Sbjct: 364 YI 365
>gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 482
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/419 (27%), Positives = 196/419 (46%), Gaps = 61/419 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L+ + +G++ P+ +Q+ AIP++L+ DV+ + TG+GKT + LP+L
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ S GN K+ + A+++ P+REL Q+ ++ + G + + GG
Sbjct: 62 LL-------SKGNKAPAKQ--VRALVLTPTRELAAQVGESVE-IYGKNLPLKSAVIFGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q L + I+V TPGR+ ++ ++ LVLDE D +L F + +
Sbjct: 112 GIGPQISKLSRGVD-ILVATPGRLLDLYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKK 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + A+RQ +M SAT + + A+ ++P+ + +V P
Sbjct: 171 ILA-----------------ILPAKRQNLMFSATFSDDIRKLAKGLVNNPVEI---SVTP 210
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ T +K + C K L + +
Sbjct: 211 RNATANT------------------------------VKQWICPVDKGQKASVLVKLIKQ 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F L+A+G+ AA +HG+ + AR+ L +FK+G+VRVLV
Sbjct: 241 HDWQQVLVFSRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEFKSGDVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ + VVN DLP Y HR GRTGR G G VS+ + E+ +++ ++
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLRDIE 359
>gi|417818956|ref|ZP_12465576.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE39]
gi|423939012|ref|ZP_17732494.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|423969805|ref|ZP_17736043.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
gi|340043670|gb|EGR04628.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE39]
gi|408664342|gb|EKL35180.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|408667076|gb|EKL37829.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
Length = 464
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + +I+ P+REL QI +E L G + GG
Sbjct: 63 LA---------KGPKVRANQVRTLILTPTRELAAQI-QENVMLYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|385851000|ref|YP_005897515.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
gi|416182708|ref|ZP_11612144.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|416213044|ref|ZP_11622090.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|325134358|gb|EGC57003.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|325144657|gb|EGC66955.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|325205823|gb|ADZ01276.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
Length = 457
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|190151364|ref|YP_001969889.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|307264721|ref|ZP_07546300.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189916495|gb|ACE62747.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|306869917|gb|EFN01682.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 445
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY ++HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNVEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|451948724|ref|YP_007469319.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
gi|451908072|gb|AGF79666.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
Length = 571
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/442 (25%), Positives = 207/442 (46%), Gaps = 65/442 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPIL 169
+F ELG+ +L+ LE GF PT VQ IP ++ K D+V + TG+GKT A+ +P++
Sbjct: 3 TFKELGIDENILKGLEALGFETPTAVQEQVIPLMIEKQVDLVSLAQTGTGKTAAFGIPLI 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
P K + +++++ P+REL +Q+ ++++ K + + GG
Sbjct: 63 QWTNPSKRHT-------------QSLVLCPTRELCIQVAKDLESFSKFVPKINILAVYGG 109
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
A +Q +L+K I++ TPGR+ ++ ++ ++V DE DE+L F++ +
Sbjct: 110 ARIDQQINSLQKG-VQIIIATPGRLKDLLNRKAVNLSKINYVVFDEADEMLQMGFQDELT 168
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ H PK E+ T++ SAT+P V R ++ +
Sbjct: 169 AILAHT----------PK-------EKNTLLFSATMPQEVARISQKY------------- 198
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+S P+ + N A+ ++H + + +++ L+R V
Sbjct: 199 ------------MSNPIELTIGTKNAGAEN--------VRHEFYLVHPKNRYLALKRIVD 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
I F ++ D KL G A LHGDL + R + +F+ +++LV
Sbjct: 239 NSPDIYSIVFCRTRKETNDIAHKLIQDGYNADALHGDLSQAQRDQVMGRFRCRNIQILVA 298
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLDV + VVN +LP ++ Y HR+GRTGR GR+G ++I E + ++ ++
Sbjct: 299 TDVAARGLDVNDLTHVVNYNLPDETSGYTHRSGRTGRAGRKGISIAIIASNEQYRLRLIE 358
Query: 530 KQLAVPIQACEFTEGRLVIGKE 551
++ C G + K+
Sbjct: 359 NKIQKKFIQCRIPTGEEICRKQ 380
>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
Length = 444
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/437 (27%), Positives = 205/437 (46%), Gaps = 67/437 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF G P + + + R ++ PT +Q IP +L DV+ + TG+GKT A+ LP+L+
Sbjct: 2 SFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLLN 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L +K + D+ +I++P+REL QI +E+K+ D V +VGG
Sbjct: 62 ----LVEKKPKHKHKRNISPDV--LILSPTRELATQIEQELKRFSHFMDTNIVS-VVGGV 114
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + L+ N +V TPGR+ ++ K++ LV+DE D +L F + +
Sbjct: 115 SYKLQNKLLKSN-VNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKK 173
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP--LLVQAKNV 348
I E + ++Q +M +AT+ + + A+ + DP + V+ +N
Sbjct: 174 IFESTSQ-----------------DQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQEN- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
SN N+Q + Y V K L +
Sbjct: 216 ---------------------KSNKNIQ------------QIAYPVADYNQKKLVLVDVL 242
Query: 409 HALDAQTVIAFMNNTRQ---LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ D I F R+ L D ++ + R + LHGD+ + R+ T+ +FKN E++
Sbjct: 243 NEADLNQAIIFTATKREADRLSDELYLMNHR---SKTLHGDMSQRERTRTINRFKNNEIQ 299
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
+LV +++ARG+DV + V+N DLP Y HR GRTGR R+G +S+ + E F++
Sbjct: 300 ILVATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFML 359
Query: 526 KKMQKQLAVPIQACEFT 542
+K++K + I+ + T
Sbjct: 360 QKIEKYANIKIEVIKST 376
>gi|254805204|ref|YP_003083425.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
gi|254668746|emb|CBA06600.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
Length = 457
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GVNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|406986526|gb|EKE07099.1| hypothetical protein ACD_18C00189G0005 [uncultured bacterium]
Length = 451
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 208/449 (46%), Gaps = 70/449 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ LE L+ +GF PT +Q IP L+ DVV + TG+GKTLAY +P++
Sbjct: 28 FDDLGIKKNFLEILKNKGFEKPTPIQHQVIPGALEGKDVVGIAQTGTGKTLAYGIPLIQN 87
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ + GNG G +I+ P+REL Q+ + + G S + ++GG +
Sbjct: 88 L-------ATGNGGQG-------LILVPTRELAQQVADALSSI-GKSLGLRIAVIIGGVS 132
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q + LR N P IV+ TPGR+ ++ + L+LDE D +L F + RI
Sbjct: 133 SRPQIKDLRNN-PHIVIATPGRLDDLMEQRQYRLDKVSMLILDEADRMLDVGFLPQIRRI 191
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ LA RQT++ SAT+P S+ A ++ PL ++ + P
Sbjct: 192 FK----------------LA-PVNRQTMLFSATMPPSISSLASAFMKMPLRIE---IAP- 230
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G+S+ N++ + S P ++ Y + K +K DT
Sbjct: 231 ---------------QGTSAE-NVEQEVFIISKPDKMRLLYSLLK-TYKDDT-------- 265
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
V+ F K + G A E+H + + R +L+ F G R++V +
Sbjct: 266 ----VLIFSRTKHGAKRIARDINTVGHSATEIHSNRTQGQRKASLEGFSRGRFRIMVATD 321
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARG+DV + LV+N DLP +S Y HR GRTGR GR G +S E ++K++K
Sbjct: 322 IAARGIDVKQISLVINFDLPDNSEDYVHRIGRTGRAGRSGKAISFVTPSEKMDIRKIEKL 381
Query: 532 LAVPIQACEFTEGRLVIGKEEEKTLEAVR 560
+ + + +I +E+ ++ A R
Sbjct: 382 IRKTLPILDLP----IIAREQSESFSADR 406
>gi|421542717|ref|ZP_15988823.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
gi|402316636|gb|EJU52178.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
Length = 457
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|304387245|ref|ZP_07369442.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
13091]
gi|304338733|gb|EFM04846.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
13091]
Length = 457
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|433494943|ref|ZP_20452010.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
gi|432229591|gb|ELK85276.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
Length = 457
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GVNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|261201117|ref|XP_002626959.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
gi|239594031|gb|EEQ76612.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
gi|239607095|gb|EEQ84082.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ER-3]
Length = 553
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 196/435 (45%), Gaps = 70/435 (16%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
++SF LGL P L+ L PT +Q A IP I+K D + S TGSGKT+A+ PI
Sbjct: 120 SSSFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFAAPI 179
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L K + + AVI+ P+REL +QI +IK + P K + L+
Sbjct: 180 LQKW-------------AEDPFGVFAVILTPTRELALQIFEQIKAISAPQSLKPI--LIT 224
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFNF 284
G R + +P IV+ TPGR+A+ I+++G G R +VLDE D LL+
Sbjct: 225 GGTEMRPQAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLA--- 281
Query: 285 REAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
SG P SAL RQT++ +ATV
Sbjct: 282 --------------SGPGSMLPDVETCLSALPPSTSRQTLLFTATV-------------- 313
Query: 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH 399
V L+SMP P N P+ + ++ QA ++PP LK Y L H
Sbjct: 314 -----TPEVRALKSMPR--PAN-KPPIFVTEISTENQA-----TIPPTLKQTYLQVPLTH 360
Query: 400 KVDTLRRCV--HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLK 457
+ L + A + I F N T+ L G + LH L + R+ L
Sbjct: 361 REAFLHTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSERTANLS 420
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+F+ R+LV +++ARGLD+ LV+N D+P + Y HR GRT R GR G V++
Sbjct: 421 RFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVTLV 480
Query: 518 EEPEVFVVKKMQKQL 532
+ +V +V ++ ++
Sbjct: 481 GQRDVQLVLAIEDRV 495
>gi|222156142|ref|YP_002556281.1| ATP-independent RNA helicase dbpA [Escherichia coli LF82]
gi|306813632|ref|ZP_07447813.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
gi|387616718|ref|YP_006119740.1| ATP-dependent RNA helicase DbpA [Escherichia coli O83:H1 str. NRG
857C]
gi|432381108|ref|ZP_19624056.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE15]
gi|432386864|ref|ZP_19629757.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE16]
gi|432513667|ref|ZP_19750896.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE224]
gi|432611150|ref|ZP_19847315.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE72]
gi|432645913|ref|ZP_19881707.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE86]
gi|432655513|ref|ZP_19891222.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE93]
gi|432698790|ref|ZP_19933951.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE169]
gi|432745400|ref|ZP_19980094.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE43]
gi|432904297|ref|ZP_20113519.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE194]
gi|432937475|ref|ZP_20135978.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE183]
gi|432971585|ref|ZP_20160458.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE207]
gi|432985118|ref|ZP_20173847.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE215]
gi|433038363|ref|ZP_20225971.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE113]
gi|433082306|ref|ZP_20268777.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE133]
gi|433100898|ref|ZP_20287000.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE145]
gi|433143955|ref|ZP_20329114.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE168]
gi|433188126|ref|ZP_20372238.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE88]
gi|222033147|emb|CAP75887.1| ATP-independent RNA helicase dbpA [Escherichia coli LF82]
gi|305852906|gb|EFM53351.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
gi|312945979|gb|ADR26806.1| ATP-dependent RNA helicase DbpA [Escherichia coli O83:H1 str. NRG
857C]
gi|430908193|gb|ELC29686.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE16]
gi|430909834|gb|ELC31199.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE15]
gi|431043488|gb|ELD53820.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE224]
gi|431149825|gb|ELE50890.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE72]
gi|431181969|gb|ELE81830.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE86]
gi|431193232|gb|ELE92569.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE93]
gi|431245366|gb|ELF39660.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE169]
gi|431292969|gb|ELF83351.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE43]
gi|431434083|gb|ELH15736.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE194]
gi|431465341|gb|ELH45452.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE183]
gi|431484594|gb|ELH64274.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE207]
gi|431502606|gb|ELH81497.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE215]
gi|431553102|gb|ELI27037.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE113]
gi|431604211|gb|ELI73621.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE133]
gi|431621166|gb|ELI89986.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE145]
gi|431664174|gb|ELJ30915.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE168]
gi|431707515|gb|ELJ72049.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE88]
Length = 457
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 181/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
D S +A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 DVS---------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGHSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|307262511|ref|ZP_07544156.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306867888|gb|EFM99719.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 449
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY ++HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNVEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIRR 369
>gi|187731861|ref|YP_001880183.1| ATP-dependent RNA helicase DbpA [Shigella boydii CDC 3083-94]
gi|187428853|gb|ACD08127.1| ATP-independent RNA helicase DbpA [Shigella boydii CDC 3083-94]
Length = 457
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+A +P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAATLPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
Length = 580
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 191/414 (46%), Gaps = 56/414 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF + G+ + + L G P +Q +P L HD++ Q+ TG+GKTL + LP +
Sbjct: 24 SFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQ 83
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+V D + G +A+I+ P+REL +Q+ ++ + V L GG
Sbjct: 84 RVVGRDDDQWGSLQKPGAP---QALILVPTRELAIQVGNDLA-VASKLRNARVATLYGGV 139
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q E L K +VVGTPGR+ ++ G L + +VLDE DE+L F ++ +
Sbjct: 140 PYEPQVEQLTKGL-EVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEK 198
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + + +RQT++ SAT+P VI AR + P+ + A +
Sbjct: 199 IMGY-----------------LPTDRQTMLFSATMPGPVITMARKYMTKPMHISAAD--- 238
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH--KVDTLRRCV 408
P + + ++++ V ++ H K + L R +
Sbjct: 239 --------------PEDHAKTKASIR---------------QVVYRVHHMDKDEMLGRIL 269
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A + F R +L ARG AA LHGDL + AR L+ F+NG+V +LV
Sbjct: 270 RAHGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILV 329
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARG+DV + V+N +P D Y HR GRTGR G GT V+ + ++
Sbjct: 330 ATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDI 383
>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
Length = 641
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 192/427 (44%), Gaps = 56/427 (13%)
Query: 92 KAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVV 151
K +K ++ E+ P SF E GL LL + + G+ PT +Q AIP I+ D++
Sbjct: 199 KFDDIKVNVTGENPPGPITSFNESGLRDYLLTNVRKSGYLKPTPIQKYAIPIIMDKRDLM 258
Query: 152 IQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211
+ TGSGKT A+LLPI++ + D + GN V+VAP+REL +QI E
Sbjct: 259 ACAQTGSGKTAAFLLPIINTLLNDNDDMTPGNPF--------VVVVAPTRELALQISEEA 310
Query: 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFL 271
+K + K V G A R + + N I+V TPGR+ + + +F+
Sbjct: 311 RKFARGTILKVVVAYGGTATRHQIDNV--NNGCHILVATPGRLLDFVDRQAVTFDRVKFV 368
Query: 272 VLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIR 331
VLDE D +L F A+ +++ H +S + ERQT+M SAT P +
Sbjct: 369 VLDEADRMLDMGFMPAVEKMMNHETMKS-------------KEERQTLMFSATFPGQIQE 415
Query: 332 AARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHY 391
A + ++ + V G + G+SS+ ++
Sbjct: 416 LAGQFLNNYIFVAV------------------GIVGGASSDVE--------------QNI 443
Query: 392 YCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451
Y VTK Q K L + + D + + F+ R L +HGD +
Sbjct: 444 YEVTKFQ-KRKKLEEILESNDPKGTLVFVETKRNADYLASLLSETKFPTTSIHGDRLQRE 502
Query: 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG 511
R L+ FK+G++ +L+ ++ARGLD+ V+N DLP Y HR GRTGR+G +G
Sbjct: 503 REEALRDFKSGKMYILIATSVAARGLDIRNVAHVINYDLPKGIDDYVHRIGRTGRVGNKG 562
Query: 512 TVVSICE 518
S +
Sbjct: 563 RATSFFD 569
>gi|143454263|sp|Q5N7W4.2|RH30_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 30
Length = 666
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 184/418 (44%), Gaps = 58/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E P F E P ++ + + GF PT +QS P LK D++ + TGS
Sbjct: 240 TVEGHDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGS 299
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL+YLLP L VG + + G+G +I+AP+REL +QI +E K G
Sbjct: 300 GKTLSYLLPGLVHVG-AQPRLEQGDGPI-------VLILAPTRELAVQIQQESGKF-GSY 350
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ + GGA + Q LR+ IV+ TPGR+ ++ G + +LVLDE D
Sbjct: 351 SRTRSTCIYGGAPKGPQIRDLRRGV-EIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADR 409
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +IV + R +RQT+ SAT P V AR +
Sbjct: 410 MLDMGFEPQIRKIVAQI-----------------RPDRQTLYWSATWPREVESLARQFLQ 452
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
+P V + GS +L+A + Q + + + +L
Sbjct: 453 NPYKV----------------------IIGSP---DLKANHSIQQIIEVISEHEKYPRLS 487
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
+ L +D ++ F + +L G A +HGD + R L +
Sbjct: 488 KLLSDL------MDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAE 541
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK+G+ ++ +++ARGLDV + V+N D PT Y HR GRTGR G GT +
Sbjct: 542 FKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTF 599
>gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
oral taxon 014 str. F0314]
gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
oral taxon 014 str. F0314]
Length = 456
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 195/412 (47%), Gaps = 57/412 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL ++ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP L
Sbjct: 2 NPFASLGLGSEIVSALTEQGYETPTPIQTAAIPKALAGHDLLAAAQTGTGKTAAFMLPSL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ S+ S + +++ P+REL QI + ++ + + L GG
Sbjct: 62 ERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFGG 115
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N +Q LR IVV T GR+ + ++ + +VLDE D +L F + +
Sbjct: 116 VNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIR 174
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ + PK +RQT++ SAT + + A+ + + P +V+
Sbjct: 175 KIMQML----------PK-------QRQTLLFSATFAPPIRKLAKDFMNAPEIVEVA--- 214
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ ++++SN++ +H V L+ K + L R +
Sbjct: 215 -----------------AQNTTSSNVE------------QHIIAVDALK-KRNLLERLIV 244
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L VI F + + L R + A +HGD + +R TL FK G +RVLV
Sbjct: 245 DLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVA 304
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N +LPT Y HR GRTGR G G +S+ ++ E
Sbjct: 305 TDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTE 356
>gi|416837277|ref|ZP_11902365.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
LSU-61]
gi|320664062|gb|EFX31249.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
LSU-61]
Length = 457
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGK A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKMAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCATEE 349
>gi|354723738|ref|ZP_09037953.1| ATP-dependent RNA helicase DbpA [Enterobacter mori LMG 25706]
Length = 457
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 182/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP L+ L G+ T VQ+AA+P+IL+ DV +Q+ TGSGKT A+ L +L +
Sbjct: 10 LPATQLDNLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQHI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+++I+ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DAALFQTQSLILCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
P+ +RQT++ SAT P ++ + +PL ++ +V L
Sbjct: 175 ---------PQ-------DRQTLLFSATWPEAIAAISGRVQKNPLTIEIDSVDAL----- 213
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
PA++ + T K+ L++ + +
Sbjct: 214 -----------------------------PAIEQQFFETSQHGKISLLQKLLSQHQPASC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L A G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNAAGQSALSLHGDLERRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|387606918|ref|YP_006095774.1| ATP-independent RNA helicase [Escherichia coli 042]
gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042]
Length = 457
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHG+L + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
gi|419837028|ref|ZP_14360468.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|421343710|ref|ZP_15794114.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43B1]
gi|423736517|ref|ZP_17709659.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|424010835|ref|ZP_17753728.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
gi|395942277|gb|EJH52954.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43B1]
gi|408626743|gb|EKK99580.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408857578|gb|EKL97266.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|408860728|gb|EKM00346.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
Length = 464
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 196/424 (46%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ AA +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + V+N +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVMNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|385340313|ref|YP_005894185.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
G2136]
gi|325198557|gb|ADY94013.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
G2136]
Length = 457
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 195/413 (47%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + PK +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQML----------PK-------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|303251782|ref|ZP_07337953.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307249083|ref|ZP_07531090.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649212|gb|EFL79397.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306854371|gb|EFM86567.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 445
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 186/420 (44%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F EL L P LL+ L ++G+ PT VQ+ IP L D++ + TG+GKT A+LLP +
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L D G +I+ P+REL MQ+ E + K ++ + GG
Sbjct: 69 H---LLDYPRRKPGAP------RILILTPTRELAMQVAEEAQAF-AEFTKLSIATITGGI 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
E N+ IVV TPGR+ + L+ DE D +L F + +
Sbjct: 119 AYQNHGEVFNSNQD-IVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEK 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I A R + T + SAT+ LLV + I
Sbjct: 178 I-----------------AAETRWRKHTWLFSATL------------EGELLVDFTDRI- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
L P+ + S + K+ Q YY ++HK L R +
Sbjct: 208 -----------LDNPLKIDAEPSRRERKKIQQ-------WYYHADNVEHKTKLLARLIST 249
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
++ + I F+ +++ L RG+++ L GD+ + R+ + + K G V VLV
Sbjct: 250 MEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNVLVAT 309
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + D V+N DLP + Y HR GRT R G++G+ +S+ E + ++ K+++
Sbjct: 310 DVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKR 369
>gi|365860402|ref|ZP_09400212.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
gi|364010132|gb|EHM31062.1| putative ATP-dependent RNA helicase [Streptomyces sp. W007]
Length = 747
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 182/379 (48%), Gaps = 51/379 (13%)
Query: 141 IPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI-EAVIVAP 199
+P L DV+ Q+ TG+GKTL + LP+L +V D + G + + TD +A++V P
Sbjct: 3 LPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEA-GRAKPEQLTDAPQALVVVP 61
Query: 200 SRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA 259
+REL Q+ ++ G V + GG Q EAL+K ++VGTPGR+ +++
Sbjct: 62 TRELCQQVTNDLL-TAGKVRNVRVLAIYGGRAYEPQVEALKKGV-DVIVGTPGRLLDLAG 119
Query: 260 AGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTI 319
KL R LVLDE DE+L F + RI+ + PK RQT+
Sbjct: 120 QRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITML---------PPK--------RQTM 162
Query: 320 MVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQ 379
+ SAT+P +VI AR + P + A T P + G++ + +Q
Sbjct: 163 LFSATMPGAVISLARRYMSQPTHINA-----------TSPDD-----EGTTVKNTVQ--- 203
Query: 380 ADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439
H Y + K + L R + A + F R D +LE RG
Sbjct: 204 ----------HVYRAHNMD-KPEMLSRILQADGRGLAMIFCRTKRTAADIAEQLEKRGFA 252
Query: 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ +HGDLG+ AR L+ F+NG+V VLV +++ARG+DV V+N P D Y H
Sbjct: 253 SGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLH 312
Query: 500 RAGRTGRLGRRGTVVSICE 518
R GRTGR G +G +++ +
Sbjct: 313 RIGRTGRAGAKGIAITLVD 331
>gi|415812430|ref|ZP_11504567.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
gi|323172286|gb|EFZ57923.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
Length = 457
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT+ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLRFSATWPEAIAVISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
gi|432770254|ref|ZP_20004602.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE50]
gi|432961208|ref|ZP_20151093.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE202]
gi|433062584|ref|ZP_20249532.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE125]
gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
gi|431316848|gb|ELG04647.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE50]
gi|431476739|gb|ELH56527.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE202]
gi|431585050|gb|ELI57010.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE125]
Length = 457
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHG+L + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|367033377|ref|XP_003665971.1| hypothetical protein MYCTH_2310255 [Myceliophthora thermophila ATCC
42464]
gi|347013243|gb|AEO60726.1| hypothetical protein MYCTH_2310255 [Myceliophthora thermophila ATCC
42464]
Length = 830
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 142/481 (29%), Positives = 219/481 (45%), Gaps = 72/481 (14%)
Query: 65 NKSNKPKKHSPI---EIPKAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLL 121
K P + PI E+ K K D K + L+ +SA N+F +L L
Sbjct: 6 TKDGLPHRKKPILKKEVKSLKRKRGEEDLNKLKAAIEQLDPKSADL--NNFTDLPLCEAT 63
Query: 122 LERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN 181
L F V T++Q AAIP LK +D++ + TGSGKTLA+L+P+L K+ K +
Sbjct: 64 ATGLRASHFEVLTDIQRAAIPLALKGNDILGAAKTGSGKTLAFLVPVLEKLYHAKWTEYD 123
Query: 182 GNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRK 241
G G A+I++P+REL +QI ++K+ G + + ++GG +S +EEA R
Sbjct: 124 GLG---------ALIISPTRELAIQIFEVLRKI-GRNHYFSAGLVIGG--KSLKEEAERL 171
Query: 242 NKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300
+ I+V TPGR+ + + + + LVLDE D ++ F+ A+ +VEH+
Sbjct: 172 GRMNILVCTPGRMLQHLDQTANFDVNNLQILVLDEADRIMDMGFQSAVDALVEHL----- 226
Query: 301 ANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPG 360
PK+ RQT++ SAT V AR DP V A P +
Sbjct: 227 -----PKT-------RQTLLFSATQSKRVSDLARLSLKDPEYVSAHEAAPTAT------- 267
Query: 361 NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
P L+ Y VT L K+DTL + + +I F+
Sbjct: 268 ------------------------PTTLQQSYVVTPLAEKLDTLWGFLRSNLKSKIIVFL 303
Query: 421 NNTRQLKDAV--FKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLD 478
++ +Q++ FK G+ LHG ++AR +F + + L ++ ARG+D
Sbjct: 304 SSGKQVRFVFESFKRMQPGIPLLHLHGRQKQVARMEITSRFSSAKYACLFATDVVARGVD 363
Query: 479 VAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE--EPEVFVVKKMQKQLAVPI 536
D V+ +D P D+ Y HR GRT R +G V + E E F+ + K+ VPI
Sbjct: 364 FPAVDWVIQVDCPEDAETYIHRVGRTARYQSKGRAVLFLDPSEEEGFLKRLEHKK--VPI 421
Query: 537 Q 537
Q
Sbjct: 422 Q 422
>gi|421610730|ref|ZP_16051896.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SH28]
gi|408498514|gb|EKK03007.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SH28]
Length = 556
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/432 (29%), Positives = 198/432 (45%), Gaps = 57/432 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F +LGL LL+ LE+ G+ PT +Q+ +IP IL +DV+ + TG+GKT A+ LPIL
Sbjct: 73 NKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPIL 132
Query: 170 SKV---GPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
+ + + S G + I ++++P+REL QI + + G + +
Sbjct: 133 QIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFR-IYGKKTRLRSTVI 191
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG N++ Q L+ +V TPGR+ ++ G + LVLDE D +L F
Sbjct: 192 FGGVNQNPQVRELQSGVDTLVA-TPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLP 250
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ RI++ + R +RQ ++ SAT+P + + A DP+ +Q
Sbjct: 251 DVKRILKFLPR-----------------DRQNLLFSATMPGPIRKLADEILVDPVTIQ-- 291
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ P + P S QAD+ P L +++ TK R
Sbjct: 292 -IAPQK------------PTVERIEQSICFVAQADK---PRLLNHFIETKATGSTLVFTR 335
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
H DA +L G+KAA +HG+ + R TL KFKN E+ V
Sbjct: 336 TKHGADA---------------VARRLVKAGVKAAAIHGNKTQANRVRTLNKFKNDELDV 380
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC--EEPEVFV 524
LV +++ARG+D+ V+N D P Y HR GRTGR GR G V C E + F
Sbjct: 381 LVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFCGGHETKFFT 440
Query: 525 VKKMQKQLAVPI 536
+ + +L +P+
Sbjct: 441 AIEREIKLQIPV 452
>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase [Pirellula staleyi DSM 6068]
gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
Length = 598
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/434 (28%), Positives = 203/434 (46%), Gaps = 70/434 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL L+ L + PT +Q AIP + D+ + TG+GKT A+ LP+L
Sbjct: 2 SFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLD 61
Query: 171 KVGPLKDKSSNGNGESGKKTD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ--- 225
++ +K N GK A++++P+REL QI +++ + A+Q
Sbjct: 62 RL--IK------NPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRY----GRHAMQNSLT 109
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
+ GG ++ Q + L + +++ TPGR+ ++ G ++ VLDE D +L F
Sbjct: 110 IYGGVSQVPQVKGLNAGQ-DVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFM 168
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ RI+ + ++QT++ SAT+P + + A HDP+ +
Sbjct: 169 PDIRRIIAK-----------------LPQQKQTLLFSATMPPEIQKLASQLLHDPVEI-- 209
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
N+ P + A QSL YY TK HK + L
Sbjct: 210 -NIEPERAT----------------------ADGITQSL------YYVPTK--HKPELLA 238
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+ + + F+ A +LE G+K +HG+ + AR TL FKNG ++
Sbjct: 239 SVLKREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQ 298
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
VLV +++ARGLDV V+N DLP + Y HR GRTGR G+ G +S C++ + ++
Sbjct: 299 VLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLL 358
Query: 526 KKMQKQLA--VPIQ 537
+ +Q+ L +P++
Sbjct: 359 RDVQRILGKKIPVE 372
>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 455
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 202/425 (47%), Gaps = 59/425 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F ELG+ + + L + +Q+ +P L+ D++ Q+ TG GKTL + +P+L
Sbjct: 9 TFTELGVAQEITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLD 68
Query: 171 KVGPLKD-KSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ D + +G A+IV P+REL +Q+ ++ + + V + GG
Sbjct: 69 RIFDDADIEELDGTPR--------ALIVVPTRELCVQVGEDLTRA-AVNLPVRVTTIYGG 119
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
QE+AL K+ +VVGTPGR+ ++ G+L R LVLDE DE+L F A+
Sbjct: 120 TPYEEQEKAL-KDGTDLVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIE 178
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I+ + AE QT++ SAT+P +++ AR + + P+ ++A+
Sbjct: 179 KIIA-----------------GITAEHQTMLFSATMPDAILGLARGFMNKPVHIRAE--- 218
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
MSG + +N KQ K + KV + R +
Sbjct: 219 ----------------MSGEA-ETNATTKQV------VFKSHRM-----DKVAVISRVLQ 250
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A I F+ R + L G + A +HGD+ + AR +L+ F++G V +LV
Sbjct: 251 ARGRGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVA 310
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ + V+N P D + Y HR GRTGR G GT V++ E+ K +
Sbjct: 311 TDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDELPKWKLIN 370
Query: 530 KQLAV 534
+L +
Sbjct: 371 DELGL 375
>gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7]
gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna
binding domain protein [Pseudomonas aeruginosa PA7]
Length = 458
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/423 (28%), Positives = 200/423 (47%), Gaps = 68/423 (16%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F L L LL L+ G+ T +Q+ ++P IL+ D++ Q+ TGSGKT A+ L +L+
Sbjct: 6 FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLAP 65
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P + +A+++ P+REL Q+ +EI++L +D V L GG
Sbjct: 66 LNP-------------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVP 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q +L ++ +VVGTPGRI E G L G LVLDE D +L F +++ I
Sbjct: 113 YGPQVASL-EHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + R RQT++ SAT P + + A+++ DP V+ +++
Sbjct: 172 IGQLPER-----------------RQTLLFSATYPDGIEKLAKAFMRDPQQVKVESL--- 211
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+++ Q +Q + P + ++D + R +
Sbjct: 212 --------------------HTDSQIEQRFFEIDP-----------KQRMDAVVRLLQHF 240
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
Q+ +AF +Q ++ L+A + A LHGDL + R L F N VLV +
Sbjct: 241 RPQSCVAFCQTRQQCQELADALKAHRISALALHGDLEQRERDQVLTVFANRSCTVLVATD 300
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI---CEEPEVFVVKKM 528
++ARGLD+A + V+N++L D + HR GR+GR G +G +S+ E ++ +
Sbjct: 301 VAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDL 360
Query: 529 QKQ 531
QKQ
Sbjct: 361 QKQ 363
>gi|449515569|ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Cucumis
sativus]
Length = 778
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 202/452 (44%), Gaps = 71/452 (15%)
Query: 89 DGIKAAGVKKSLEI----ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSI 144
+GI A ++ EI ++ P +SF G PP +L + GF+ PT +Q+ + P
Sbjct: 136 NGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVHNAGFSAPTPIQAQSWPIA 195
Query: 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204
L++ D+V + TGSGKTL YL+P + +++ K ++++P+REL
Sbjct: 196 LQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDP---------KLGPTVLVLSPTRELA 246
Query: 205 MQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLH 264
QI E K G S + + L GGA + Q + + IVV TPGR+ +I ++
Sbjct: 247 TQIQDEAVKF-GKSSRISCACLYGGAPKGLQLRDIDRGV-DIVVATPGRLNDILEMRRIS 304
Query: 265 THGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT 324
H +LVLDE D +L F + +IV+ V A RQT+M +AT
Sbjct: 305 LHQVSYLVLDEADRMLDMGFEPQIRKIVKEV-----------------PARRQTLMYTAT 347
Query: 325 VPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSL 384
P V + A +P+ V NV L + N Q ++L
Sbjct: 348 WPKEVRKIASDLLVNPIQVNIGNVDELVA--------------------NKSITQHIEAL 387
Query: 385 PPALKHYYCVTKLQHKVDTLRRCVHALDAQ----TVIAFMNNTRQLKDAVFKLEARGMKA 440
P KH RR L +Q VI F + T+++ D + + R A
Sbjct: 388 APLEKH--------------RRLEQILRSQEPGSKVIIFCS-TKKMCDQLARNLTRQFGA 432
Query: 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
A +HGD + R L +F+ G VLV +++ARGLD+ + +V+N D P+ Y HR
Sbjct: 433 AAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVVINYDFPSGVEDYVHR 492
Query: 501 AGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
GRTGR G G + E + + K L
Sbjct: 493 IGRTGRAGATGIAYTFFGEQDAKYASDLIKIL 524
>gi|432792592|ref|ZP_20026679.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE78]
gi|432798552|ref|ZP_20032576.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE79]
gi|431340525|gb|ELG27553.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE78]
gi|431344703|gb|ELG31641.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE79]
Length = 457
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 179/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHG+L + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|392307103|ref|ZP_10269637.1| ATP-dependent RNA helicase [Pseudoalteromonas citrea NCIMB 1889]
Length = 465
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 189/408 (46%), Gaps = 63/408 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +LGL P +++ + +G+ PT +Q IP++L DV+ + TG+GKT A+ LP++
Sbjct: 2 TFSDLGLSPSIVQSITDKGYTTPTAIQEKGIPAVLSGQDVMAAAQTGTGKTAAFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL-LGPSDKKAVQQLVGG 229
++ LK+ N A+++AP+REL +QI ++ G + AV + GG
Sbjct: 62 QL--LKEDRPRSN-------QALALVLAPTRELALQIAENVEAYSQGTRLRSAV--VYGG 110
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ Q LRK I++ TPGR+ ++ + + + R LVLDE D +L F +
Sbjct: 111 VKINPQMIQLRKGVD-ILIATPGRLLDLYSQNAVKFNQLRTLVLDEADRMLDMGFIHDIK 169
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI++ + PK ERQ ++ SAT FS DP+ AK +I
Sbjct: 170 RIIKVL----------PK-------ERQNLLFSAT--FS----------DPIRDLAKGLI 200
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
P+ S + N +K Q Y V K Q K L +
Sbjct: 201 -------------VSPIEISVTPKNAASKTVTQ-------FAYAVDKPQ-KTKLLSHLIR 239
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
Q V+ F V +LE + A +HG+ + AR L FK GEV VLV
Sbjct: 240 TKKWQQVLVFCRTKHGANRLVTQLERDKITGAAIHGNKSQSARVKALNGFKTGEVNVLVA 299
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++ ARGLD+AE VVN DLP Y HR GRTGR G G VS
Sbjct: 300 TDIVARGLDIAELPYVVNYDLPNIYEDYVHRIGRTGRAGSDGQAVSFV 347
>gi|449446676|ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
46-like [Cucumis sativus]
Length = 785
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 202/452 (44%), Gaps = 71/452 (15%)
Query: 89 DGIKAAGVKKSLEI----ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSI 144
+GI A ++ EI ++ P +SF G PP +L + GF+ PT +Q+ + P
Sbjct: 143 NGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVHNAGFSAPTPIQAQSWPIA 202
Query: 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204
L++ D+V + TGSGKTL YL+P + +++ K ++++P+REL
Sbjct: 203 LQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDP---------KLGPTVLVLSPTRELA 253
Query: 205 MQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLH 264
QI E K G S + + L GGA + Q + + IVV TPGR+ +I ++
Sbjct: 254 TQIQDEAVKF-GKSSRISCACLYGGAPKGLQLRDIDRGV-DIVVATPGRLNDILEMRRIS 311
Query: 265 THGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT 324
H +LVLDE D +L F + +IV+ V A RQT+M +AT
Sbjct: 312 LHQVSYLVLDEADRMLDMGFEPQIRKIVKEV-----------------PARRQTLMYTAT 354
Query: 325 VPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSL 384
P V + A +P+ V NV L + N Q ++L
Sbjct: 355 WPKEVRKIASDLLVNPIQVNIGNVDELVA--------------------NKSITQHIEAL 394
Query: 385 PPALKHYYCVTKLQHKVDTLRRCVHALDAQ----TVIAFMNNTRQLKDAVFKLEARGMKA 440
P KH RR L +Q VI F + T+++ D + + R A
Sbjct: 395 APLEKH--------------RRLEQILRSQEPGSKVIIFCS-TKKMCDQLARNLTRQFGA 439
Query: 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
A +HGD + R L +F+ G VLV +++ARGLD+ + +V+N D P+ Y HR
Sbjct: 440 AAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVVINYDFPSGVEDYVHR 499
Query: 501 AGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532
GRTGR G G + E + + K L
Sbjct: 500 IGRTGRAGATGIAYTFFGEQDAKYASDLIKIL 531
>gi|410646395|ref|ZP_11356846.1| cold-shock DEAD box protein A homolog [Glaciecola agarilytica NO2]
gi|410134001|dbj|GAC05245.1| cold-shock DEAD box protein A homolog [Glaciecola agarilytica NO2]
Length = 436
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 202/423 (47%), Gaps = 67/423 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL P +L + +G+ P+ +Q+ AIP+IL+ D++ + TG+GKT + LP+L
Sbjct: 2 SFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLLE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI---VREIKKLLGPSDKKAVQQLV 227
+ + K + GN A+++ P+REL Q+ V + K L + AV +
Sbjct: 62 LLN--RGKHARGN-------QARALVLTPTRELAAQVGASVVDYGKDL--PLRSAV--VF 108
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + Q LRK I+V TPGR+ ++ + LVLDE D +L F
Sbjct: 109 GGVGINPQMIKLRKGVD-ILVATPGRLLDLYNQNAVRFDDLEVLVLDEADRMLDMGFIHD 167
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ ++++ + A+RQ ++ SAT FS
Sbjct: 168 IKKVLK-----------------LLPAKRQNLLFSAT--FS------------------- 189
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+ + A G ++ P+ S S N + +QS+ P K+ K L R
Sbjct: 190 ----DDIRALAKGLVNNPVEVSVSPPNTTVEAVEQSICPVDKN--------QKTPALIRM 237
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ D Q V+ F +LEARG+ +A +HG+ + AR+ L +FKNG+VR L
Sbjct: 238 IKDNDWQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKNGKVRAL 297
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+++ VVN DLP + Y HR GRTGR G G +S+ E ++
Sbjct: 298 VATDIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLAD 357
Query: 528 MQK 530
+++
Sbjct: 358 IER 360
>gi|421563618|ref|ZP_16009435.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
gi|421907136|ref|ZP_16337023.1| ATP-dependent RNA helicase DBP2 [Neisseria meningitidis alpha704]
gi|393291750|emb|CCI73008.1| ATP-dependent RNA helicase DBP2 [Neisseria meningitidis alpha704]
gi|402340643|gb|EJU75842.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
Length = 457
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYEKPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GVNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
5]
gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 423
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 195/426 (45%), Gaps = 66/426 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
+F +L L LL L EG+ PT +Q+ AIP +L D++ + TG+GKT A+ LPIL
Sbjct: 2 TTFADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPIL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ + +N G +++AP+REL QI K + + + GG
Sbjct: 62 QRL-LTHHRRANPKGA-------RVLVLAPTRELASQIDESFKS-YARHMRLSHTVIFGG 112
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ RQ EA+R+ ++V PGR+ ++ G + G LVLDE D +L F +
Sbjct: 113 VGQGRQVEAMRRGVD-VLVAAPGRLLDLMGQGHIDLSGLEVLVLDEADRMLDMGFVRDIR 171
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RIV + R +RQT++ SAT+P S+ A DP VQ
Sbjct: 172 RIVAELPR-----------------DRQTLLFSATMPKSIADLAHGLLRDPATVQ----- 209
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSL---PPALKHYYCVTKLQHKVDTLRR 406
T P + + + + K+A L P ++ T ++H
Sbjct: 210 ------VTPPSSTVDRIRQAVMFVDTDNKRAALQLLVDSPKVERAVVFTLMKH------- 256
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+A V AF+N+ G+ A +HG+ + AR + F++G V+V
Sbjct: 257 -----EANKVAAFLND-------------HGIIAEAIHGNKSQGARERAMAGFRSGAVKV 298
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARG+DV + V N DLP Y HR GRT R GR G VS+C+ + ++
Sbjct: 299 LVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLR 358
Query: 527 KMQKQL 532
++K +
Sbjct: 359 DIEKAI 364
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 208/438 (47%), Gaps = 67/438 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F L L P LL + G+ T +Q+ AIP +L DV+ + TG+GKT A+ LP+L K
Sbjct: 17 FDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 76
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ L+ ++++ S + + A+++AP+REL Q+ +K S + V + GG +
Sbjct: 77 M--LRHENASA---SPARHPVRALVLAPTRELADQVANNVKTYARHSQLR-VTCVFGGID 130
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q L++ +++ TPGR+ + A + ++VLDE D +L F + RI
Sbjct: 131 MAPQTAELKRGV-EVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQRI 189
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ ++ PK+ RQT++ SAT + + A+S+ DPLLV+
Sbjct: 190 LSYL----------PKT-------RQTLLFSATFSPEIKKLAQSYLQDPLLVEV------ 226
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV-HA 410
+ N A +Q +Y VT D RR V H
Sbjct: 227 -------------------ARPNATATNVEQ-------RFYSVTD-----DDKRRTVLHI 255
Query: 411 LDAQTV---IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
L +++ I F+N+ E G++ + LHGD + R L FK GEV VL
Sbjct: 256 LRERSITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVDVL 315
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+A+ V N D+P ++ Y HR GRTGR G G VS+ + +V
Sbjct: 316 VATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLVSD 375
Query: 528 MQKQL--AVPIQACEFTE 543
+++ + + I+A E +
Sbjct: 376 IEQLIKKKIEIEAIELND 393
>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 582
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 191/414 (46%), Gaps = 56/414 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF + G+ + + L G P +Q +P L HD++ Q+ TG+GKTL + LP +
Sbjct: 24 SFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQ 83
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+V D + G +A+I+ P+REL +Q+ ++ + V L GG
Sbjct: 84 RVVGRDDDQWGSLQKPGAP---QALILVPTRELAIQVGNDLA-VASKLRNARVATLYGGV 139
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q E L K +VVGTPGR+ ++ G L + +VLDE DE+L F ++ +
Sbjct: 140 PYEPQVEQLTKGL-EVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEK 198
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + + +RQT++ SAT+P VI AR + P+ + A +
Sbjct: 199 IMGY-----------------LPTDRQTMLFSATMPGPVITMARKYMTKPMHISAAD--- 238
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH--KVDTLRRCV 408
P + + ++++ V ++ H K + L R +
Sbjct: 239 --------------PEDHAKTKASIR---------------QVVYRVHHMDKDEMLGRIL 269
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
A + F R +L ARG AA LHGDL + AR L+ F+NG+V +LV
Sbjct: 270 RAHGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILV 329
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+++ARG+DV + V+N +P D Y HR GRTGR G GT V+ + ++
Sbjct: 330 ATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDI 383
>gi|224284362|gb|ACN39916.1| unknown [Picea sitchensis]
Length = 593
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/418 (29%), Positives = 188/418 (44%), Gaps = 58/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E P SF E +L LER GF+ PT +Q+ P LK D++ + TGS
Sbjct: 159 TVEGRDVPKPLRSFREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGS 218
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTLAYLLP + + + ++G+G +++AP+REL +QI +E K G S
Sbjct: 219 GKTLAYLLPAIVHINA-QPHLAHGDGPI-------VLVLAPTRELAVQIQQESVKF-GTS 269
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
K + GGA + Q L++ IV+ TPGR+ ++ A + +LVLDE D
Sbjct: 270 SKIKSTCIYGGAPKGPQIRDLQRGV-EIVIATPGRLIDMLEARHTNLRRVTYLVLDEADR 328
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +I+ + R +RQT+ SAT P V AR + H
Sbjct: 329 MLDMGFEPQIRKIITQI-----------------RPDRQTLYWSATWPREVENLARQFLH 371
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
+P V + GS+ +L+A A + + Y +L
Sbjct: 372 NPYKV----------------------IIGSA---DLKANHAISQIVEVVSEYEKYPRL- 405
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
++ +D ++ FM + +L G A +HGD + R L +
Sbjct: 406 -----IKLLEEIMDGSRILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGE 460
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK G+ ++ +++ARGLDV + V+N D P Y HR GRTGR G +GT S
Sbjct: 461 FKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSF 518
>gi|261253372|ref|ZP_05945945.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417953129|ref|ZP_12596177.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260936763|gb|EEX92752.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342817661|gb|EGU52538.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 488
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 195/424 (45%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G++ P+ +Q AIP++L DV+ + TG+GKT + LPIL +
Sbjct: 3 FTSLGLSAPILKAIEEQGYDTPSPIQEQAIPAVLSGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ NG+ K I A+I+ P+REL Q+ + K Q + GG
Sbjct: 63 LD---------NGQRVKGNHIRALILTPTRELAAQVQENVFKY-SRHQSLTSQVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q LRK ++V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 VNPQMLKLRKG-CDVLVATPGRLLDLYQQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + A+RQ ++ SAT + A+ +DP+ V
Sbjct: 172 LN-----------------VLPAKRQNLLFSATFSAEIRELAKGLVNDPVEV-------- 206
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S + N A +QS+ PA K + K L + +
Sbjct: 207 -----------------SVNKENSTAVTIEQSIYPADK--------RKKAPMLVKLIKDG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ + + F F L G+ AA +HG+ + AR+ L FK+G+VRVLV +
Sbjct: 242 NWKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVRVLVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP---EVFVVKKM 528
++ARG+D+ + VVN +LP S Y HR GRTGR G G +S+ E E+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNYELPHVSEDYVHRIGRTGRAGEVGRAISLVEADEAGELFGIERL 361
Query: 529 QKQL 532
+Q+
Sbjct: 362 IQQV 365
>gi|254672936|emb|CBA07321.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha275]
Length = 489
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|88859266|ref|ZP_01133906.1| ATP-dependent RNA helicase, DEAD box family protein
[Pseudoalteromonas tunicata D2]
gi|88818283|gb|EAR28098.1| ATP-dependent RNA helicase, DEAD box family protein
[Pseudoalteromonas tunicata D2]
Length = 449
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 194/409 (47%), Gaps = 64/409 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F E G+ LL +L +G PT+VQ AIP L D+ +QS TGSGKTLA+L+P L +
Sbjct: 12 FEEFGIDKRLLTQLAHQGITSPTDVQQQAIPVALSGQDLFVQSKTGSGKTLAFLVPALQR 71
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ K S K D AVI+ P+REL Q+ +++ L+ S+ A + ++GG N
Sbjct: 72 IIKQKPLS---------KRDPRAVIITPTRELANQVFAQLRLLVAGSNIVATK-ILGGDN 121
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q +AL+K+ P ++V TPGR+A+ G L++DE D ++ F+ + I
Sbjct: 122 FNDQIKALKKD-PHVIVATPGRLADHIKQKSCFLAGLELLIIDEADRIMDLGFKAEIDLI 180
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ AN R RQT++ SAT+ S I A ++N+
Sbjct: 181 ------NTEANHRL----------RQTLLFSATLEHSQIDAL-----------SRNL--- 210
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
L P + S SN + Q++ + L HK L +
Sbjct: 211 ----------LKSPKKVTLSQSNEEHTDITQNM-------FFADNLLHKEALLAHFLSKP 253
Query: 412 DAQTVIAFM---NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ I F +T +L + + +G+ + L GD+ + R + + F G+ +VL+
Sbjct: 254 NIGQCIVFTATREDTYRLSELI---SGKGLSSQALAGDMPQSKRLSIMDSFSRGQSQVLI 310
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
T ++++RGLD+ V+N DLP + Y HR GRTGR G +G +S
Sbjct: 311 TTDIASRGLDLLNVTHVINFDLPKQAEEYVHRIGRTGRAGFKGHAISFV 359
>gi|226506900|ref|NP_001142117.1| uncharacterized protein LOC100274281 [Zea mays]
gi|194704910|gb|ACF86539.1| unknown [Zea mays]
gi|194707190|gb|ACF87679.1| unknown [Zea mays]
gi|414875847|tpg|DAA52978.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 494
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/411 (28%), Positives = 186/411 (45%), Gaps = 58/411 (14%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P F ++G P +L+ + + GF PT +QS P L+ D++ + TGSGKTLAYL
Sbjct: 87 PKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYL 146
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
LP + V + S G+G +++AP+REL +QI +E K G S K
Sbjct: 147 LPAIVHVNA-QPILSPGDGPI-------VLVLAPTRELAVQIQQEATKF-GASSKIKSTC 197
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
+ GG + Q L+K IV+ TPGR+ ++ + + +LVLDE D +L F
Sbjct: 198 IYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFE 256
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ +IV + R +RQT+ SAT P V + AR++ DP V
Sbjct: 257 PQIKKIVSQI-----------------RPDRQTLYWSATWPKEVEQLARNFLFDPYKV-- 297
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
+ + +L+A A ++H +++ Q +
Sbjct: 298 -----------------------TIGSEDLKANHA------IVQHVEILSESQKYNKLVN 328
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+D ++ FM+ + +L G A +HGD + R L +FK+G+
Sbjct: 329 LLEDIMDGSRILIFMDTKKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSP 388
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
++ +++ARGLDV + V+N D P Y HR GRTGR G +GT +
Sbjct: 389 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 439
>gi|421544742|ref|ZP_15990815.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|421546826|ref|ZP_15992870.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|421553040|ref|ZP_15999010.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
gi|402322603|gb|EJU58058.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|402322655|gb|EJU58106.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|402329613|gb|EJU64970.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
Length = 457
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GVNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
Length = 487
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 193/412 (46%), Gaps = 57/412 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP L
Sbjct: 26 NPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSL 85
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+ S+ S + +++ P+REL QI + ++ + + L GG
Sbjct: 86 ELLKRYATSST-----SPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTV-LFGG 139
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
N +Q LR IVV T GR+ + ++ + +VLDE D +L F + +
Sbjct: 140 VNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIR 198
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I++ + PK +RQT++ SAT + + A+ + H P +V+
Sbjct: 199 KIMQML----------PK-------QRQTLLFSATFSPPIRKLAQDFMHTPEMVEVA--- 238
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ +++N+N++ +H V L+ K L R +
Sbjct: 239 -----------------AQNTTNANVE------------QHIIAVDALK-KRSLLERLIV 268
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
L VI F + + L R + A +HGD + +R TL FK G +RVLV
Sbjct: 269 DLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVA 328
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N +LPT Y HR GRTGR G G +S+ ++ E
Sbjct: 329 TDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTE 380
>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
25986]
gi|133775654|gb|EBA39474.1| DEAD/DEAH box helicase [Collinsella aerofaciens ATCC 25986]
Length = 749
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 199/440 (45%), Gaps = 63/440 (14%)
Query: 102 IESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKT 161
+ESA +F ELGL +L +E G+ PT VQ+ +IP +L+ D++ + TG+GKT
Sbjct: 38 VESATENLPAFDELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKT 97
Query: 162 LAYLLPILSKV------GPLKDKSSNGNGESGKKTDIEA-----VIVAPSRELGMQIVRE 210
A+LLP ++ + P++++ KK + +++ P+REL QI
Sbjct: 98 AAFLLPTMNNLEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEV 157
Query: 211 IKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270
K+ + AV +VGG + Q AL K I+V TPGR+ ++ G H +
Sbjct: 158 AGKIADVTGHVAVT-VVGGVSYKPQTAAL-KYGCDILVATPGRLVDLIEQGACHLDEVKV 215
Query: 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVI 330
LVLDE D +L F A+ RIV AERQT++ SAT+ +
Sbjct: 216 LVLDEADRMLDMGFLPAVRRIVRETP-----------------AERQTLLFSATLDEEAV 258
Query: 331 RAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKH 390
DP V E PAT A DQ + P
Sbjct: 259 GEITDLVSDPARV--------EIAPATS-----------------TADTVDQFVFP---- 289
Query: 391 YYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKL 450
++ K + L + + I FM + +LE +G+KAA +HG+ +
Sbjct: 290 ----VSIEAKNNLLPEFLKKEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQA 345
Query: 451 ARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRR 510
R L F++G V VLV ++ ARG+D+++ VVN D+P + Y HR GRTGR G
Sbjct: 346 QRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGEL 405
Query: 511 GTVVSICEEPEVFVVKKMQK 530
G ++ E +V +++K
Sbjct: 406 GWAITFVTEQDVDEFYEIEK 425
>gi|422834818|ref|ZP_16882877.1| ATP-independent RNA helicase dbpA [Escherichia coli E101]
gi|371613576|gb|EHO02069.1| ATP-independent RNA helicase dbpA [Escherichia coli E101]
Length = 457
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ + L
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL----- 213
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
P+++ + T + K+ L+R + +
Sbjct: 214 -----------------------------PSIEQQFYETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 529
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/441 (27%), Positives = 208/441 (47%), Gaps = 61/441 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL L + L++ G+ T +Q+ +IP ++ +D+ + TG+GKT+A+LLP L +
Sbjct: 3 FNELPFHESLSKALDKIGYVELTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTLHR 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +++ + A+++AP+REL +QI E KKLL +D V ++GG +
Sbjct: 63 LLSAEEEEALPY----------ALVLAPTRELTIQIAEEAKKLLEFTDL-GVATIIGGTD 111
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
QE+AL NK I+V TPGR+ + L + ++LDE D + F + + I
Sbjct: 112 YKSQEQAL-GNKACIIVATPGRLIDFVKNHGLSLENIKVVILDEADRMFDMGFVQDLKYI 170
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
R +Q+++ SAT+ + V+R A + +DP+ V
Sbjct: 171 FHKCKNR-----------------KQSLLFSATLSYEVVRLASKYLNDPIEVHI------ 207
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ + ++ DQSL H KL + V++L + +
Sbjct: 208 -------------------NPEKVITERIDQSL----LHLGREEKLPYLVNSL--LNYPI 242
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ +I F N + V L G+ A L +L + R L+ FK G+ + L+ +
Sbjct: 243 EGLGII-FTNYKMNIPKIVSALRRFGITATGLSSELDQKKRIRLLRDFKAGKYKYLIATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+++RG+D+ D+V N DLP D+ +Y HR GRT R GR+G + C E + +++++K
Sbjct: 302 VASRGIDIENIDVVYNYDLPQDAENYVHRIGRTARAGRKGQSIGFCSETDYTELERIEKY 361
Query: 532 LAVPIQACEFTEGRLVIGKEE 552
L I E E L K E
Sbjct: 362 LNSKIPVAEIREEYLEFPKGE 382
>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 429
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 198/420 (47%), Gaps = 61/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGLP LL+ ++ +G+ P+ +Q+ AIP+IL+ DV+ + TG+GKT + LP+L+
Sbjct: 2 SFDLLGLPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L +K G K + A+++ P+REL Q+ + G + + GG
Sbjct: 62 ----LLEK-----GNRPKPNQVRALVLTPTRELAAQVHASVATY-GKNMPLRSAVVFGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LR+ ++V TPGR+ ++ + L+LDE D +L F + R
Sbjct: 112 KINPQMQILRQGVD-VLVATPGRLIDLYNQNAVSFKQLEVLILDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + PK +RQ ++ SAT + R A+
Sbjct: 171 ILAVL----------PK-------QRQNLLFSATFSPDIRRLAK---------------- 197
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
G ++ P+ S S N A+ Q++ Y V K + + L +
Sbjct: 198 ---------GLVNNPVEISVSPRNTTAENVTQTV-------YEVDKTKKSI-VLSTLIKQ 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F+ V LE RG+ AA +HG+ + AR+ L FK G+VR LV
Sbjct: 241 NDWQQVLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAGFKEGQVRALVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+D+ + VVN DLP S Y HR GRTGR G G +S+ E ++K ++K
Sbjct: 301 DIAARGIDIDQLPQVVNFDLPHVSEDYVHRIGRTGRAGNEGQALSLVCNEEFKLLKDIEK 360
>gi|407791990|ref|ZP_11139065.1| ATP-dependent RNA helicase SrmB [Gallaecimonas xiamenensis 3-C-1]
gi|407198466|gb|EKE68500.1| ATP-dependent RNA helicase SrmB [Gallaecimonas xiamenensis 3-C-1]
Length = 449
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/435 (28%), Positives = 204/435 (46%), Gaps = 59/435 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F L L P LLE + GF PT +QS AIP+ + HD++ S TG+GKT A+LLP L
Sbjct: 2 AFEHLELDPALLEAVAELGFKKPTVIQSQAIPAAMDGHDLLAMSPTGTGKTAAFLLPALQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ K +K +I+ P+REL +Q+ + K L G + + ++GG
Sbjct: 62 HLLDYPKK---------RKEPPRVLILTPTRELALQVEADAKALAGKT-PIGIGSVIGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ +AL + +VV TPGR+ E L+LDE D +L F++ M
Sbjct: 112 DYKVHGKAL-GGEVDLVVATPGRLVEYIDKNLFDCIAVELLILDEADRMLEMGFQKDMEL 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+E +R RQT++ SAT+ GH+
Sbjct: 171 ILEKCEQR-----------------RQTLLFSATLE----------GHN----------- 192
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
LE L+ P+ S+ S + K+ Q + YYC K+ HK L +
Sbjct: 193 LEQFAEKA---LTDPVELSADPSRRERKKIHQWV------YYCDDKV-HKFKLLLAHLRH 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + F+ +L + +L + L G++ + R+ + +FK+G+V VL+
Sbjct: 243 PDTHKALVFVKTREKLAELRDQLAGEKLPCVWLQGEMAQDKRNNAVARFKSGQVPVLLAT 302
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGL + + V+N D+P + Y HR GRTGR G +GT +++ E ++ +++++++
Sbjct: 303 DVAARGLHIDDISHVINYDMPRTADVYVHRIGRTGRAGAKGTAINLVEAHDLSMLRRVER 362
Query: 531 QLAVPIQACEFTEGR 545
PI+A E R
Sbjct: 363 YQEDPIKARVIDELR 377
>gi|385341673|ref|YP_005895544.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|385857479|ref|YP_005903991.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|416177826|ref|ZP_11610195.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|416191808|ref|ZP_11616236.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|416203389|ref|ZP_11620069.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
961-5945]
gi|421549077|ref|ZP_15995100.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|421551035|ref|ZP_15997035.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|421567841|ref|ZP_16013574.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
gi|433467565|ref|ZP_20425019.1| helicase domain protein [Neisseria meningitidis 87255]
gi|433469626|ref|ZP_20427044.1| helicase domain protein [Neisseria meningitidis 98080]
gi|433471689|ref|ZP_20429073.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|433477861|ref|ZP_20435181.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|433492813|ref|ZP_20449904.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|433497112|ref|ZP_20454147.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|433499175|ref|ZP_20456182.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|433501147|ref|ZP_20458132.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|433503550|ref|ZP_20460506.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
gi|433522140|ref|ZP_20478828.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|433526315|ref|ZP_20482945.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|433537033|ref|ZP_20493537.1| helicase domain protein [Neisseria meningitidis 77221]
gi|433539196|ref|ZP_20495671.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|325132396|gb|EGC55089.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|325138385|gb|EGC60953.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|325142616|gb|EGC65008.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
961-5945]
gi|325201879|gb|ADY97333.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|325208368|gb|ADZ03820.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|402324994|gb|EJU60413.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|402328569|gb|EJU63936.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|402343276|gb|EJU78427.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
gi|432202399|gb|ELK58463.1| helicase domain protein [Neisseria meningitidis 87255]
gi|432202795|gb|ELK58852.1| helicase domain protein [Neisseria meningitidis 98080]
gi|432207929|gb|ELK63914.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|432215526|gb|ELK71415.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|432227744|gb|ELK83450.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|432233197|gb|ELK88829.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|432233602|gb|ELK89228.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|432235120|gb|ELK90737.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|432239020|gb|ELK94580.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
gi|432258992|gb|ELL14271.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|432261079|gb|ELL16336.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|432272919|gb|ELL28021.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|432272999|gb|ELL28100.1| helicase domain protein [Neisseria meningitidis 77221]
Length = 457
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 195/413 (47%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + PK +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQML----------PK-------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 494
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 195/419 (46%), Gaps = 58/419 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L +L ++ G+ PT +Q+ AIP L+ DVV + TG+GKT +++LP+L+
Sbjct: 2 TFKDLKLSDKVLAAIDAAGYTTPTPIQAQAIPFALEGRDVVGIAQTGTGKTASFVLPLLN 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G + ++I+ P+REL Q+ E + LG K V L+GG
Sbjct: 62 ML-------EQGRARARMP---RSLILEPTRELAAQVA-EAFETLGSQHKLTVALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ QE+ L + I++ TPGR+ + GKL + +LV+DE D +L F + R
Sbjct: 111 SFDDQEKKLERGAD-ILIATPGRLLDHFGRGKLLMNAVDYLVIDEADRMLDMGFIPDIER 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + + P S RQT+ SAT+P + + + +P V+
Sbjct: 170 ICKLL----------PPS-------RQTLFFSATMPPEIQKLTDQFLKNPEQVRV----- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S PAT N++ + S ++S K + ++ +V T+
Sbjct: 208 --SAPATAAKNITQKLKFSPADSKT-------------KRHVLRELMRSEVSTI------ 246
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
Q I F N R + L G A LHGDL + R+ TL+ F+ GE+ L +
Sbjct: 247 ---QNAIIFCNRKRDVAVLHKSLVKHGFNAGALHGDLDQRQRTATLEAFRKGEITYLAAS 303
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ E V N D+P Y HR GRTGR GR G I E+ V+ ++
Sbjct: 304 DVAARGLDIPEVSHVFNFDVPISPEDYVHRIGRTGRAGRDGYAAMIVTPKEMKGVRAIE 362
>gi|121635112|ref|YP_975357.1| ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
gi|120866818|emb|CAM10576.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
Length = 483
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 195/413 (47%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 28 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 87
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 88 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 141
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 142 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 200
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + PK +RQT++ SAT + + A+ + + P V+
Sbjct: 201 RKIMQML----------PK-------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 241
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V +Q K + L R +
Sbjct: 242 ------------------AQNTTNANVE------------QHIIAVDTIQ-KRNLLERLI 270
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 271 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 330
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 331 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 383
>gi|421538358|ref|ZP_15984535.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
gi|402317177|gb|EJU52716.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
Length = 457
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GVNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 202/434 (46%), Gaps = 59/434 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + GL +L L +G++ PT +Q+AAIP +L+ DV+ + TG+GKT + LPI+
Sbjct: 18 FEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ ++ N S + + A+I+ P+REL Q+ +K + ++ + GG +
Sbjct: 78 L-----LANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTV-VFGGMD 131
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q ALR IV+ TPGR+ + L+ + LV+DE D +L F + RI
Sbjct: 132 MAPQTAALRAGV-EIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRI 190
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + PK +RQ +M SAT + + A S+ +P+ ++
Sbjct: 191 INLL----------PK-------KRQNLMFSATFSGEIKKLASSFLDNPVTIEV------ 227
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
+ SN A + Q + Y V K D + +
Sbjct: 228 -------------------ARSNQTADRVTQVV-------YKVDSDDAKRDIVAHLIRGR 261
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ V+ F N +LE G+KA+ +HGD + R L+ FK GE+ VLV +
Sbjct: 262 QLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGEIDVLVATD 321
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVVKKM 528
++ARGLD+++ V+N DLP ++ Y HR GRTGR G G +S+ +E + ++K+
Sbjct: 322 VAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDERLLLDIEKL 381
Query: 529 QKQLAVPIQACEFT 542
VP + +T
Sbjct: 382 INHKFVPAELVGYT 395
>gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
Length = 602
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 193/426 (45%), Gaps = 60/426 (14%)
Query: 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAY 164
AP A +F LGL P L+E L G+ PT +Q+AA+P +L D++ + TG+GKT A+
Sbjct: 40 APVEA-TFDSLGLKPALVEALSALGYEEPTPIQAAALPPLLAGKDLLGIAATGTGKTAAF 98
Query: 165 LLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224
LP+L+ V P + + A+++ P+REL MQ+ I + G +V
Sbjct: 99 ALPLLNHVEP----------GACRPNTTSALVLVPTRELAMQVSEAIHR-YGQKLGISVL 147
Query: 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
L GG +Q L++ +VV TPGR + G L R +VLDE DE+L F
Sbjct: 148 PLYGGQVIGQQLRVLKRGV-DVVVATPGRALDHLRRGTLQLDDVRVVVLDEADEMLDMGF 206
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
E + I+ SG +RQT + SAT+P + A H+P+ V+
Sbjct: 207 AEDLEAIL------SGTP-----------EDRQTALFSATLPPRIASIAERHLHEPVRVK 249
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
+ ++ +Q P ++ V K+ TL
Sbjct: 250 ------------------------------IAREKVEQGEIPRVRQTAYVVPRAFKIATL 279
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
R + I F ++ D L RG +A LHG + + R +K+ K+
Sbjct: 280 GRLLDVESPTAAIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGT 339
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
+LV +++ARGLD+ VVN D+P Y HR GRTGR GR G +++ E E +
Sbjct: 340 DLLVATDVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRL 399
Query: 525 VKKMQK 530
++ +++
Sbjct: 400 LRNIER 405
>gi|357528785|sp|Q5AWA6.2|DBP3_EMENI RecName: Full=ATP-dependent RNA helicase dbp3
Length = 488
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 187/395 (47%), Gaps = 55/395 (13%)
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
+GF PT +QSA P + DV+ + TGSGKTLA+ LP L KV LK K
Sbjct: 91 DGFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQ-------- 142
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
K AV+++P+REL MQI ++ K D + V + GG + Q EAL+ A+V
Sbjct: 143 KSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQ-VACIFGGVKKDEQREALKSA--AVV 199
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V TPGR+ ++ G L ++LVLDE D +L F + + I+ + P
Sbjct: 200 VATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPM----------PV 249
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
S +RQT+M +AT P V A ++ P+ V + P+ P
Sbjct: 250 S------KRQTVMFTATWPPIVRNLASTFMTSPVTVT------IGGDPSADP-------- 289
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKL-QHKVDTLRRCVHALDAQTVIAFMNNTRQL 426
+N + KQ + + P K V L +H+ T + V+AF ++
Sbjct: 290 ----RANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDK---------VLAFCLYKKEA 336
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
L +G K A +HGDL + R +L+ FK+G VLV +++ARGLD+ LVV
Sbjct: 337 MRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVV 396
Query: 487 NLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
N+ P Y HR GRTGR G G +++ E +
Sbjct: 397 NVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETD 431
>gi|148255365|ref|YP_001239950.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
Length = 478
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/431 (29%), Positives = 197/431 (45%), Gaps = 61/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G + +I+ P+REL Q V+E G K V L+GG
Sbjct: 62 IL-------EKGRARARMP---RTLILEPTRELAAQ-VKENFDRYGAGQKLNVALLIGGV 110
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ L + +++ TPGR+ + + G L G LV+DE D +L F + R
Sbjct: 111 SFGDQDTKLTRGV-DVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIER 169
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + V P + RQT+ +AT+P + R ++ H+P V+
Sbjct: 170 ICKLV----------PFT-------RQTLFFTATMPPEIRRVTETFLHNPQKVE------ 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV-H 409
+S P + + + + LQ ++ K + LR+ +
Sbjct: 207 -----------VSRPATTAVTVTQLQVPGGREA--------------HQKREVLRKLLRE 241
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
A D + I F N R + L+ G LHGD+ + AR L +F+ GE+ +LV
Sbjct: 242 AKDLKNAIIFCNRKRDVAILHKSLQKHGFSVCALHGDMDQSARMAALDQFRKGELPLLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++ARGLD+ E V N D+P S Y HR GRTGR GR GT +SI + + ++
Sbjct: 302 SDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPADQKSITAIE 361
Query: 530 KQLAVPIQACE 540
K + I E
Sbjct: 362 KLIGQSIPKAE 372
>gi|385855466|ref|YP_005901979.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
gi|325204407|gb|ADY99860.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
Length = 457
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + PK +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQML----------PK-------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris TIE-1]
gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
CGA009]
gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 472
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 190/410 (46%), Gaps = 65/410 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL + + G+ PT +Q AIP +L DV+ + TG+GKT A++LP+L+
Sbjct: 2 SFSNLGLSEKVQAAVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTGKTAAFVLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTD--IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q+ + K G K V L+G
Sbjct: 62 ML------------EKGRARARMPRTLILEPTRELAAQVKEQFDK-YGAGQKLNVALLIG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q+ L + +++ TPGR+ + + G L G L++DE D +L F +
Sbjct: 109 GVSFGDQDLKLTRGV-DVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI + V P + RQT+ +AT+P + R ++ H+P ++
Sbjct: 168 ERICKLV----------PFT-------RQTLFFTATMPTEIRRITETFLHNPEKIE---- 206
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+S P S + + + Q C + K +TLRR +
Sbjct: 207 -------------VSKPASTAVTVTQSQVP--------------CGREPHEKRETLRRLI 239
Query: 409 H-ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
A D + I F N R++ L+ G LHGD+ + AR+ L+ F+ G++ +L
Sbjct: 240 RGATDLKNAIIFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPIL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
V ++++ARGLD+ E V N D+P Y HR GRTGR GR GT V+I
Sbjct: 300 VASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIV 349
>gi|432801627|ref|ZP_20035609.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE84]
gi|431349740|gb|ELG36569.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE84]
Length = 457
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
D S + +++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 DVS---------LFQTQGLVLCPTRELADQVAVELRRLARFLLNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|448515464|ref|XP_003867345.1| Spb4 ATP-dependent RNA helicase [Candida orthopsilosis Co 90-125]
gi|380351684|emb|CCG21907.1| Spb4 ATP-dependent RNA helicase [Candida orthopsilosis]
Length = 616
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 208/424 (49%), Gaps = 61/424 (14%)
Query: 113 LELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172
L L P L + L G+ T VQ++ IP + N DV++++ TGSGKTLA+ +P+L +V
Sbjct: 13 LRYDLYPWLKDALLSLGYPSMTPVQASTIPLLCGNKDVIVEAVTGSGKTLAFAIPVLERV 72
Query: 173 GP-LKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG--PSD---KKAVQQL 226
L +G E K+ I +++++P+REL QI ++L P + + Q L
Sbjct: 73 SKRLYTPDEDGKLEPLKRNHILSIVISPTRELAKQIQMVFDRVLEYLPEELTPQIKTQLL 132
Query: 227 VGGANRSRQE-EALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNF 284
VG R++ E ++N+P I++ TPGR+ + ++ + + T ++LDE D+LL F+F
Sbjct: 133 VGSLGNVREDLEKFQENQPQILIATPGRLLDFLTTSPIVKTSSLEIVILDEADKLLDFSF 192
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+ I++ + PK +R+T + SATV + ++ ++P+ VQ
Sbjct: 193 EMDVVNILKKL----------PK-------QRRTGLFSATVSSAGDAIFKTGMNNPVKVQ 235
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
K N +Q Q+ P +L+ Y + + ++KV TL
Sbjct: 236 VK-------------------------TKNFLGEQ--QNAPTSLQLSYMLLQPEYKVTTL 268
Query: 405 RRCVHALDAQTVIAFMNNTRQLKD--AVFKLEARG---MKAAELHGDLGKLARSTTLKKF 459
+ D + VI + +K +F G ++ LHG L AR TL+KF
Sbjct: 269 LTILRDYDFKKVIVYFPTCTSVKHFYQIFTKLVDGDSNLQFFSLHGQLNTKARLNTLEKF 328
Query: 460 KNGE----VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515
NG VL+T +++ARG+DV E DLVV LD PTD + HR GRTGR R G +
Sbjct: 329 INGNEPNTKYVLMTTDVAARGIDVPEVDLVVQLDPPTDPSVFLHRCGRTGRANRAGRAIV 388
Query: 516 ICEE 519
+ +
Sbjct: 389 MLND 392
>gi|59800607|ref|YP_207319.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
NCCP11945]
gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
gi|385335019|ref|YP_005888966.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
TCDC-NG08107]
gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
NCCP11945]
gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 457
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GVNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKAEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYIHRIGRTGRAGADGVAISLMDESE 357
>gi|421565722|ref|ZP_16011492.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
gi|402343299|gb|EJU78448.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
Length = 457
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 194/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + PK +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQML----------PK-------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|417822695|ref|ZP_12469293.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE48]
gi|340048825|gb|EGR09741.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE48]
Length = 464
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 195/424 (45%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G+N P+ +Q AIP++L DV+ + TG+GKT + LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + + A+I+ P+REL QI + L G + GG
Sbjct: 63 LA---------KGPKVRANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q + + K I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 INPQMQRMCKGA-DILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ + + RQ ++ SAT + A+
Sbjct: 172 LKLLPEK-----------------RQNLLFSATFSTEIRELAK----------------- 197
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
G ++ P+ S S +N A+ +Q + PA ++ K D L + V
Sbjct: 198 --------GLVNNPVEISVSPANSTARTVEQCIYPA--------DVKKKPDMLVKLVKEG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q V+ FM L +G+ A +HG+ + AR+ L FK GEVR+LV +
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTTAAIHGNKSQGARTRALADFKAGEVRILVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G ++VS E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
Query: 529 QKQL 532
+ L
Sbjct: 362 TQAL 365
>gi|67900874|ref|XP_680693.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
gi|40742814|gb|EAA62004.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
Length = 498
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 186/395 (47%), Gaps = 55/395 (13%)
Query: 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
+GF PT +QSA P + DV+ + TGSGKTLA+ LP L KV LK K
Sbjct: 91 DGFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQ-------- 142
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
K AV+++P+REL MQI ++ K D + V + GG + Q EAL+ A+V
Sbjct: 143 KSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQ-VACIFGGVKKDEQREALKSA--AVV 199
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V TPGR+ ++ G L ++LVLDE D +L F + + I+ + P
Sbjct: 200 VATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPM----------PV 249
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
S +RQT+M +AT P V A ++ P+ V + P+ P
Sbjct: 250 S------KRQTVMFTATWPPIVRNLASTFMTSPVTVT------IGGDPSADP-------- 289
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKL-QHKVDTLRRCVHALDAQTVIAFMNNTRQL 426
+N + KQ + + P K V L +H+ T V+AF ++
Sbjct: 290 ----RANSRIKQVVEVVKPHEKEQRLVQILNRHQRGT---------PDKVLAFCLYKKEA 336
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
L +G K A +HGDL + R +L+ FK+G VLV +++ARGLD+ LVV
Sbjct: 337 MRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVV 396
Query: 487 NLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
N+ P Y HR GRTGR G G +++ E +
Sbjct: 397 NVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETD 431
>gi|381400238|ref|ZP_09925215.1| ATP-dependent RNA helicase [Kingella kingae PYKK081]
gi|380834720|gb|EIC14548.1| ATP-dependent RNA helicase [Kingella kingae PYKK081]
Length = 456
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 207/439 (47%), Gaps = 61/439 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
F +LGL ++ L +G+ PT +Q AAIP L HD++ + TG+GKT A++LP L
Sbjct: 2 TQFSQLGLGQEIVSALSEQGYETPTPIQLAAIPKALAGHDLLAAAQTGTGKTAAFMLPSL 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ + S+ S + +++ P+REL QI + K + + L GG
Sbjct: 62 ERLKRYANAST-----SPAMHPVRMLVLTPTRELADQIDQNTKSYIKNLPLRHT-VLFGG 115
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ +Q LR IVV T GR+ + ++ + +VLDE D +L F + +
Sbjct: 116 VSMDKQTADLRAG-CEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFVDEIR 174
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
+I+ + PK RQT++ SAT + + A+ + H P ++
Sbjct: 175 QIMRML----------PKP-------RQTLLFSATFALDIRKLAQDFMHLPETIEVA--- 214
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ +++N+N++ +H V K + L R +
Sbjct: 215 -----------------AQNTTNANVE------------QHVIAVDA-HRKKELLERLIV 244
Query: 410 ALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L+ VI F T+Q D V + L RG+ A +HGD + R L +FK+GE+RVLV
Sbjct: 245 DLNMPQVIVFC-KTKQSADQVARDLLRRGLSANAIHGDKSQQTRLEVLSQFKSGELRVLV 303
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+AE V+N +LP + Y HR GRTGR G G +S+ +E E + +
Sbjct: 304 ATDVAARGLDIAELPFVINYELPVQAEDYVHRIGRTGRAGAEGVAISMMDETEQKMYASI 363
Query: 529 QKQLA--VPIQACEFTEGR 545
Q+ + +P+ E E R
Sbjct: 364 QELIGAQLPVSRIEGFEPR 382
>gi|429851141|gb|ELA26355.1| ATP-dependent RNA helicase dbp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 601
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 197/408 (48%), Gaps = 61/408 (14%)
Query: 121 LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180
L+++ + PT +Q+A+ P L DV+ + TGSGKT+A+ LP++ + +K
Sbjct: 191 LIQKNPFSSYKTPTPIQAASWPFTLSRRDVIGVAETGSGKTMAFALPLVEAISKVK---- 246
Query: 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR 240
K I+AV+V+P+REL MQ +++ + K V + GGA++ Q AL
Sbjct: 247 --------KRGIKAVVVSPTRELAMQTQEQLEHVSSLLGLKCVC-IYGGASKDDQR-ALL 296
Query: 241 KNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300
++V TPGR+ + A G + RF VLDE D +L F E + I+ G
Sbjct: 297 NRGADVIVATPGRLKDFMADGTIELKDTRFAVLDEADRMLDKGFEEDIKGIL-------G 349
Query: 301 ANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPG 360
A P R ERQT+M +AT P SV + A S+ DP+ + ++ ++G
Sbjct: 350 AMPP--------REERQTVMFTATWPASVRKLAESFMVDPIKI---------TIGSSGKE 392
Query: 361 NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKL------QHKVD-TLRRCVHALDA 413
SG + +N + Q + + P K + L K D L C++ +A
Sbjct: 393 TASGAVE---LQANTRITQRVEVVDPRAKEQRLLQLLKQHQQGNKKNDRILVFCLYKKEA 449
Query: 414 QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473
V F L+ RG++ +HGDL + R+ +L+ FK G VLV +++
Sbjct: 450 TRVETF-------------LQQRGIRVGGIHGDLRQEQRTRSLEAFKAGTTPVLVATDVA 496
Query: 474 ARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
ARGLD+ E LV+N+ P Y HR GRTGR G+ G +++ + +
Sbjct: 497 ARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGEAITLFTQQD 544
>gi|421561398|ref|ZP_16007246.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
gi|254669919|emb|CBA04478.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha153]
gi|402338861|gb|EJU74091.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
Length = 457
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ S+ S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERLKRYATAST-----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GVNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|406706051|ref|YP_006756404.1| helicase family protein,DEAD/DEAH box helicase [alpha
proteobacterium HIMB5]
gi|406651827|gb|AFS47227.1| helicase family protein,DEAD/DEAH box helicase [alpha
proteobacterium HIMB5]
Length = 431
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 201/421 (47%), Gaps = 66/421 (15%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
N+F EL L L L+ F PT +QS +IP L D++ + TG+GKTLA+ +P++
Sbjct: 2 NNFNELPLENQLKNSLKFADFKTPTPIQSQSIPISLTGKDILGTAQTGTGKTLAFTIPMI 61
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
+K+ +KDK++ A+I+ P+REL Q+++ + KL L+GG
Sbjct: 62 NKL--IKDKNA------------MALIICPTRELASQVMQTVTKLNTKEININSALLIGG 107
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ +Q L K + I+VGTPGRI + L + +LVLDE D +L F +
Sbjct: 108 ESMQKQLRQLTK-RTRIIVGTPGRINDHIERKSLKLYKVTYLVLDETDRMLDMGFTPQIE 166
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
I+ H+ PKS QT++ SAT+P +++ + + +P V
Sbjct: 167 LILRHI----------PKS-------HQTLLFSATLPDDILKISEKYLKNPERVSV---- 205
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
G++S P+ + KQ + P K++ + +L +
Sbjct: 206 ----------GSVSTPIE--------KIKQKTFQITPDKKYHELINQLVER--------- 238
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ +++ F+ V +L+ G A +HG+L + R ++ F++G+ R+LV
Sbjct: 239 ---SGSILVFVKTKHGADKIVKRLKYDGHSADAIHGNLRQSKRDRVIRGFRSGKSRILVA 295
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ V+N DLP Y HR GRTGR G+ G+ ++ + + + +Q
Sbjct: 296 TDVAARGLDIPLIQHVINYDLPQVPEDYIHRIGRTGRAGKEGSAMTFLTNHDYSMWRSIQ 355
Query: 530 K 530
K
Sbjct: 356 K 356
>gi|301122737|ref|XP_002909095.1| ATP-dependent RNA helicase dbp4, putative [Phytophthora infestans
T30-4]
gi|262099857|gb|EEY57909.1| ATP-dependent RNA helicase dbp4, putative [Phytophthora infestans
T30-4]
Length = 524
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/441 (29%), Positives = 204/441 (46%), Gaps = 71/441 (16%)
Query: 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188
GF PT++Q ++P L DV+ + TGSGKTLA+LLP+L K+ L+ +G G
Sbjct: 78 GFTAPTKIQVGSLPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLG---- 133
Query: 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
A+++AP+REL +QI E+ + +G + + ++GG N +EE LR + +++
Sbjct: 134 -----ALVIAPTRELALQIF-EVLRNVGKAHAFSAGLVIGGKNF--REEQLRLIRMNLLI 185
Query: 249 GTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
TPGR+ + + + LVLDE D +L F++ + I+EH
Sbjct: 186 CTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEH------------- 232
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367
L ERQT++ SAT Q K+V L ++ P ++ +
Sbjct: 233 --LPPAGERQTMLFSAT-------------------QTKSVKDLAALSLREPEYVA--VH 269
Query: 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
S+N+ P L+ Y VT L+ K+D L + + Q I F++ RQ++
Sbjct: 270 EHSANAT----------PKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVR 319
Query: 428 --DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLV 485
+VF G+ LHG + R +F N VL +++ARGLD + D V
Sbjct: 320 FVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWV 379
Query: 486 VNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQ-------- 537
+ LD P D+ +Y HR GRT R ++G + EV + K + VPI+
Sbjct: 380 LQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPTK 439
Query: 538 --ACEFTEGRLVIGKEEEKTL 556
+C +V G +E K L
Sbjct: 440 TSSCRQKVASVVAGDKEIKAL 460
>gi|421556917|ref|ZP_16002826.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
gi|402335602|gb|EJU70866.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
Length = 457
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 192/413 (46%), Gaps = 57/413 (13%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+N F LGL L+ L +G+ PT +Q+AAIP L HD++ + TG+GKT A++LP
Sbjct: 2 SNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L ++ K S + +++ P+REL QI + ++ + + L G
Sbjct: 62 LERL-----KRHATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTV-LFG 115
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G N +Q LR IVV T GR+ + + + +VLDE D +L F + +
Sbjct: 116 GMNMDKQTADLRAG-CEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDI 174
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+I++ + R +RQT++ SAT + + A+ + + P V+
Sbjct: 175 RKIMQMLPR-----------------QRQTLLFSATFSAPIRKLAQDFMNAPETVEVA-- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +++N+N++ +H V Q K + L R +
Sbjct: 216 ------------------AQNTTNANVE------------QHIIAVDTFQ-KRNLLERLI 244
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
L VI F + + +L R + A +HGD + +R TL FK+G +RVLV
Sbjct: 245 VDLHMNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 304
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARGLD+AE V+N ++P Y HR GRTGR G G +S+ +E E
Sbjct: 305 ATDIAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESE 357
>gi|327351047|gb|EGE79904.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ATCC
18188]
Length = 553
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 196/435 (45%), Gaps = 70/435 (16%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
++SF LGL P L+ L PT +Q A IP I+K D + S TGSGKT+A+ PI
Sbjct: 120 SSSFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFAAPI 179
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L K + + AVI+ P+REL +QI +IK + P K + L+
Sbjct: 180 LQKW-------------AEDPFGVFAVILTPTRELALQIFEQIKAISAPQSLKPI--LIT 224
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFNF 284
G R + +P IV+ TPGR+A+ I+++G G R +VLDE D LL+
Sbjct: 225 GGTEMRPQAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLA--- 281
Query: 285 REAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
SG P SAL RQT++ +ATV
Sbjct: 282 --------------SGPGSMLPDVETCLSALPPSTSRQTLLFTATV-------------- 313
Query: 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH 399
V L+SMP P N P+ + ++ QA ++PP LK Y L H
Sbjct: 314 -----TPEVRALKSMPR--PAN-KPPIFVTEISTENQA-----TIPPTLKQTYLQVPLTH 360
Query: 400 KVDTLRRCV--HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLK 457
+ L + A + I F N T+ L G + LH L + R+ L
Sbjct: 361 REAFLHTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSERTANLS 420
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
+F+ R+LV +++ARGLD+ LV+N D+P + Y HR GRT R GR G V++
Sbjct: 421 RFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVTLV 480
Query: 518 EEPEVFVVKKMQKQL 532
+ +V +V ++ ++
Sbjct: 481 GQRDVQLVLAIEDRV 495
>gi|261339970|ref|ZP_05967828.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
35316]
gi|288317887|gb|EFC56825.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
35316]
Length = 457
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 181/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP LE L G+ T VQ+AA+P+IL+ DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPAAQLENLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQRI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+++++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DAGLFQTQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A+RQT++ SAT P ++ + + PL ++ V L
Sbjct: 175 ----------------PADRQTLLFSATWPEAIAAISGRVQNAPLTIEIDTVDAL----- 213
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
PA++ + + K+ L++ + +
Sbjct: 214 -----------------------------PAIEQQFFEVSQKGKIALLQKVLSQHKPASC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L A G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|313675971|ref|YP_004053967.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
4126]
gi|312942669|gb|ADR21859.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
4126]
Length = 439
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/432 (28%), Positives = 204/432 (47%), Gaps = 66/432 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF + L L ++ G+ P+E+Q AIP IL HDV+ + TG+GKT A++LP+L
Sbjct: 7 SFQDFKLNKQLFNAIDDLGYQKPSEIQVKAIPRILNGHDVIGIAQTGTGKTAAFVLPLLM 66
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ K + G+ D A+I+AP+REL MQ+ I +L +D + V L GG
Sbjct: 67 KL-----KYAQGH-------DPRALIIAPTRELVMQVYENILELGKYTDLRTVC-LYGGI 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+Q + + + I+V TPGR+ +I +AG L + +LDE D ++ F + R
Sbjct: 114 GPKKQAQEVAEG-CDIIVATPGRLLDIYSAGVLQPKQIKTFILDEADRMMDMGFMPQIRR 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++E L M+ +Q + SAT P V + A + P V
Sbjct: 173 VLE---------------LLPMK--KQNLFFSATFPEKVEKYAYEFTDFPEKV------- 208
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
E P T + A+ +QSL Y V K++ L+
Sbjct: 209 -EVTPET-----------------MTAELIEQSL-------YHVPNFLTKINLLKYLFEN 243
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGM--KAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
D V+ F+ TR+ + V+ R + + +H + + R + +FK+G VRVLV
Sbjct: 244 EDFSRVLIFVR-TRKNANNVYSFIERKISEEVRVIHANKAQSTRINAINEFKSGNVRVLV 302
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+ +++ARG+DV E V+N ++P Y HR GRTGR G +S + +V+ + K+
Sbjct: 303 STDVTARGIDVEEVSHVINFEVPNKYEDYVHRIGRTGRAEHHGIAISFVDPSDVYHINKI 362
Query: 529 QKQLAVPIQACE 540
++ + I+ +
Sbjct: 363 EELIQKKIKVID 374
>gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+]
gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+]
Length = 488
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/485 (25%), Positives = 209/485 (43%), Gaps = 73/485 (15%)
Query: 58 EFEPTNKNKSNKPKKHSPIEIP---KAKVKAVRSDGIKAAGVKKSLEIESAPFAANSFLE 114
E T+ N HS +P +K+K + A K + +F
Sbjct: 59 ELASTHLNHIRPSTIHSTPSLPVCANSKIKMAEGGIDRKADEKLTFSTSKEVTVHPTFES 118
Query: 115 LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGP 174
+ L LL + G+ P+ VQS AI I K D + Q+ +G+GKT + + +L +
Sbjct: 119 MSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDT 178
Query: 175 LKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR 234
++ +A++++P+REL QI + + LG +GG N
Sbjct: 179 AVRET-------------QALVLSPTRELATQI-QSVVMALGDYMNVQCHACIGGTNVG- 223
Query: 235 QEEALRKNKPA--IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292
E +RK IV GTPGR+A++ L T + LVLDE DELL+ FRE ++ +
Sbjct: 224 --EDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVY 281
Query: 293 EHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLE 352
++ P + Q ++VSAT+P V+ + DP+ + K
Sbjct: 282 RYL----------PPAT-------QVVVVSATLPHDVLTMTTKFMTDPVRILVKR----- 319
Query: 353 SMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHAL 411
D+ LK Y+ V K K DTL L
Sbjct: 320 ----------------------------DELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL 351
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ F N R++ K+ + +HGD+ + R + ++ F+ G RVL++ +
Sbjct: 352 TITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTD 411
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
+ ARG+DV + LV+N DLP++ +Y HR GR+GR GR+G ++ +V +++ ++
Sbjct: 412 VWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDIELY 471
Query: 532 LAVPI 536
+ I
Sbjct: 472 YSTQI 476
>gi|294084931|ref|YP_003551691.1| DEAD/DEAH box helicase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 651
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/424 (29%), Positives = 200/424 (47%), Gaps = 65/424 (15%)
Query: 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYL 165
P A F + LP +L L REG VPT +Q +IP +L HD++ + TG+GKT A+L
Sbjct: 13 PSANGKFADFDLPENMLGTLAREGLVVPTPIQQMSIPLLLLGHDLIGLAQTGTGKTAAFL 72
Query: 166 LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225
LP+++++ S + + SG+ +A+I+AP+REL QI + +L + + +
Sbjct: 73 LPLMTQL------SYSPSVRSGQPP--KALILAPTRELANQISANLSRLSADMNIRHIC- 123
Query: 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
+ GGA Q L++ IVV TPGR+ ++ G G +LDE D +L F
Sbjct: 124 VFGGARYEGQIRGLKRGV-DIVVATPGRLMDLMERGSFDPSGITHWILDEADHMLDLGFY 182
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
AM I + ++ A+RQT++ SAT+P + + + DP V+A
Sbjct: 183 PAMKHI-----------------SASLPADRQTMLFSATMPPEIEKLGNEFLTDPERVKA 225
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
P SG +++ + + K D L
Sbjct: 226 -------------------PQSGITADK--------------ITQRVTLMAEADKRDRLC 252
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
++ D + F+ T++ DA+ K +E RG LHGD+ + R L+ F++G +
Sbjct: 253 DVLNHEDTGQCLIFVR-TKRRADALSKFMEDRGFAVDTLHGDMRQGLRQKVLRNFRDGRL 311
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPE 521
+ L+ +++ARG+D+A VVN DL Y HR GRTGR G G +S C EEP
Sbjct: 312 QGLIATDVAARGIDIAGLSHVVNFDLTDTPEAYVHRIGRTGRAGLGGLALSFCSPSEEPR 371
Query: 522 VFVV 525
+ +
Sbjct: 372 LAAI 375
>gi|218700063|ref|YP_002407692.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI39]
gi|386623949|ref|YP_006143677.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O7:K1 str. CE10]
gi|218370049|emb|CAR17825.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
IAI39]
gi|349737687|gb|AEQ12393.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O7:K1 str. CE10]
Length = 457
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ + L
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL----- 213
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
P+++ + T + K+ L+R + +
Sbjct: 214 -----------------------------PSIEQQFYETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|388567718|ref|ZP_10154148.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
gi|388265047|gb|EIK90607.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
Length = 482
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/443 (28%), Positives = 204/443 (46%), Gaps = 59/443 (13%)
Query: 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPIL 169
SF EL L P L + + G+ T +Q+ AIP +L DV+ + TG+GKT A+ LP+L
Sbjct: 3 QSFSELNLAPALAKAVAEMGYETMTPIQAQAIPQVLTGRDVMGAAQTGTGKTAAFSLPLL 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229
++ LK ++++ S + + A+++ P+REL Q+ ++K L + + GG
Sbjct: 63 QRL--LKHENAS---TSPARHPVRALVLLPTRELADQVAEQVK-LYAKYTQLRSTVVFGG 116
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ Q L+K ++V TPGR+ + A + ++VLDE D +L F +
Sbjct: 117 MDMKPQTLELKKGV-EVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQ 175
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+ ++ PK +R T++ SAT + R A S+ DP+ V+
Sbjct: 176 RILSYL----------PK-------QRTTLLFSATFSPEIKRLANSYLQDPITVEV---- 214
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ SN A +Q H+Y V K TLR+ +
Sbjct: 215 ---------------------ARSNATASTVEQ-------HFYRVDD-DDKRGTLRQILR 245
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ F+N+ LE G+ A LHGD + R L FK G V +LV
Sbjct: 246 DRGLKQAFVFVNSKLGCARLARSLERDGLNTAALHGDKSQDERLKALDAFKQGNVDLLVC 305
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ + V N D+P ++ Y HR GRTGR G G VS + +V +++
Sbjct: 306 TDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFVSGRDARLVGELE 365
Query: 530 KQLA--VPIQACEFTEGRLVIGK 550
K L + I+A E + R G+
Sbjct: 366 KLLGKKLEIEALELEQDRRPAGR 388
>gi|242059637|ref|XP_002458964.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
gi|241930939|gb|EES04084.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
Length = 578
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 181/418 (43%), Gaps = 58/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E P F E P ++ + + GF PT +QS P LK D++ + TGS
Sbjct: 148 TVEGRDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDLIGIAQTGS 207
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL+YLLP L VG + + G+G +I+AP+REL +QI E K G
Sbjct: 208 GKTLSYLLPGLVHVG-AQPRLEQGDGPI-------VLILAPTRELAVQIQEESTKF-GSY 258
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ + GGA + Q LR+ IV+ TPGR+ ++ AG + +LVLDE D
Sbjct: 259 SRTRSTCVYGGAPKGPQIRDLRRGV-EIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADR 317
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +IV + R +RQT+ SAT P V AR +
Sbjct: 318 MLDMGFEPQIRKIVAQI-----------------RPDRQTLYWSATWPREVEALARQF-- 358
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
L P + + L+A + Q + + + +L
Sbjct: 359 -----------------------LQNPYKVTIGSPELKANHSIQQIVEVISDHEKYPRLS 395
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
+ L +D ++ F + +L G A +HGD + R L +
Sbjct: 396 KLLSDL------MDGSRILIFFQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAE 449
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK+G+ ++ +++ARGLDV + V+N D PT Y HR GRTGR G GT +
Sbjct: 450 FKSGKSPIMAATDVAARGLDVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTF 507
>gi|349700907|ref|ZP_08902536.1| DNA/RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 588
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 192/399 (48%), Gaps = 65/399 (16%)
Query: 119 PLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDK 178
P L L+ G++ PT VQ+A + + D+++ + TGSGKT+A+ L + D
Sbjct: 8 PALQRALDERGYDNPTPVQTAVLDVAAEGRDLLVSAQTGSGKTVAFGLA-------MADT 60
Query: 179 SSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEA 238
G G AVI+AP+REL MQ+ RE+ L P+ + V +GG + R+ A
Sbjct: 61 LLGGAERFGPAGPPLAVIIAPTRELAMQVTRELTWLYAPAGGRIVS-CIGGMDARREARA 119
Query: 239 LRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298
L+ IVVGTPGR+ + + G+L R +VLDE DE+L FR+ + ++++
Sbjct: 120 LQMGA-HIVVGTPGRLCDHLSRGRLDMSQLRVVVLDEADEMLDLGFRDELEQLLD----- 173
Query: 299 SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATG 358
AM R+T++ SAT+ + AR + +D + +
Sbjct: 174 ------------AMPKTRRTLLFSATIAKEIASLARRYQNDAVRIDT------------- 208
Query: 359 PGNLSGPMSGSSSNSNLQAKQ--AD-QSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQT 415
+SG+ +++++ + AD + L PA+ V+ LR D+QT
Sbjct: 209 -------LSGAKQHADIEYRAVVADARELIPAV------------VNVLRYT----DSQT 245
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSAR 475
+ F ++ L RG + L G+LG+ R+ + + G+ V V +++AR
Sbjct: 246 TMVFCATREMVRHMQAALVERGFSSVALSGELGQNERTRAIDSLRKGQANVCVATDVAAR 305
Query: 476 GLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVV 514
G+D+ LV++ LPTD HR+GRTGR GR+G V
Sbjct: 306 GIDIPALALVIHATLPTDPATLLHRSGRTGRAGRKGVCV 344
>gi|115398415|ref|XP_001214799.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
gi|121737771|sp|Q0CL13.1|DBP3_ASPTN RecName: Full=ATP-dependent RNA helicase dbp3
gi|114192990|gb|EAU34690.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
Length = 493
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/401 (31%), Positives = 187/401 (46%), Gaps = 55/401 (13%)
Query: 121 LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180
L E+L F PT +QSA P + DV+ + TGSGKTLA+ LP L K
Sbjct: 91 LYEQLN--SFKSPTSIQSATWPLLFGGRDVIGIAETGSGKTLAFGLPCLKK-------IE 141
Query: 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR 240
+ + K AVI++P+REL MQI +++K GP K V + GG + Q E L+
Sbjct: 142 DSKKKKSKPYQPMAVIISPTRELAMQIHDQLQKFAGPVGAK-VACIFGGVRKDEQREVLK 200
Query: 241 KNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300
IVV TPGR+ ++ G + R+LVLDE D +L F + + I++ +
Sbjct: 201 TAN--IVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPM----- 253
Query: 301 ANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPG 360
P S +RQT+M +AT P V A ++ P+ V + P+ P
Sbjct: 254 -----PVS------KRQTVMFTATWPPVVRELASTFMSSPVTVT------IGGDPSADP- 295
Query: 361 NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
+N + KQ + + P K V L+ H A+ V+AF
Sbjct: 296 -----------RANTRIKQVVEVVKPHEKEGRLVQLLKQ---------HQRGAEKVLAFC 335
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
++ L++RG K A +HGDL + R +L FK G VLV +++ARGLD+
Sbjct: 336 LYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIP 395
Query: 481 ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LV+N+ P Y HR GRTGR G G +++ E +
Sbjct: 396 AVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTETD 436
>gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
profundum SS9]
Length = 422
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 202/425 (47%), Gaps = 59/425 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L++ + GF PT +Q AIP +L D++ + TG+GKT A+ LP++
Sbjct: 2 SFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMIQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--G 228
++ +S + G K I A+++ P+REL Q+ I L S +++ V G
Sbjct: 62 RLLA-SQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSI---LAYSKNTSIKVAVAYG 117
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q +AL K+ I++ TPGR+ + + G + LVLDE D +L F +
Sbjct: 118 GTSMGVQVKAL-KSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDI 176
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI++ + R+ RQT++ SAT V + A DP L++ V
Sbjct: 177 KRIMQRMPRK-----------------RQTLLFSATFSNQVKKLAYDILADPKLIE---V 216
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
P N+ A+ Q + P KH K + L +
Sbjct: 217 TP----------------------ENITAESVTQMVYPVDKH--------RKRELLSYLI 246
Query: 409 HALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + V+ F T+Q D + K L G+KA ++GD + AR L FK G+VR +
Sbjct: 247 GSRNWNQVLIF-TKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEGKVRAM 305
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+ + VVN DLP + Y HR GRTGR G G+ +S+ E + ++
Sbjct: 306 VATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSIDEEWALRA 365
Query: 528 MQKQL 532
+++ L
Sbjct: 366 IEELL 370
>gi|56784388|dbj|BAD82427.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
gi|56785381|dbj|BAD82339.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
gi|222619731|gb|EEE55863.1| hypothetical protein OsJ_04500 [Oryza sativa Japonica Group]
Length = 571
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 184/418 (44%), Gaps = 58/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E P F E P ++ + + GF PT +QS P LK D++ + TGS
Sbjct: 145 TVEGHDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGS 204
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL+YLLP L VG + + G+G +I+AP+REL +QI +E K G
Sbjct: 205 GKTLSYLLPGLVHVG-AQPRLEQGDGPI-------VLILAPTRELAVQIQQESGKF-GSY 255
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ + GGA + Q LR+ IV+ TPGR+ ++ G + +LVLDE D
Sbjct: 256 SRTRSTCIYGGAPKGPQIRDLRRGV-EIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADR 314
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +IV + R +RQT+ SAT P V AR +
Sbjct: 315 MLDMGFEPQIRKIVAQI-----------------RPDRQTLYWSATWPREVESLARQFLQ 357
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
+P V + GS +L+A + Q + + + +L
Sbjct: 358 NPYKV----------------------IIGSP---DLKANHSIQQIIEVISEHEKYPRLS 392
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
+ L +D ++ F + +L G A +HGD + R L +
Sbjct: 393 KLLSDL------MDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAE 446
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK+G+ ++ +++ARGLDV + V+N D PT Y HR GRTGR G GT +
Sbjct: 447 FKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTF 504
>gi|401564090|ref|ZP_10805009.1| DEAD/DEAH box helicase [Selenomonas sp. FOBRC6]
gi|400189185|gb|EJO23295.1| DEAD/DEAH box helicase [Selenomonas sp. FOBRC6]
Length = 424
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 200/421 (47%), Gaps = 65/421 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L L+++G PT VQ AIP + DV+ Q+ TG+GKTLA+LLPIL+K
Sbjct: 4 FDQLGVSETLAALLKKQGIMEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAFLLPILAK 63
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P + T +A+++AP+REL +QI R + + LG + GGA+
Sbjct: 64 IKP-------------QGTAAQALVIAPTRELAIQIER-VAEPLGKELGIGTIVIYGGAD 109
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ+E LR++ P +++GTPGR+ + G L +VLDE DE+L F E + +
Sbjct: 110 IERQKEKLRRH-PQLIIGTPGRLLDHVRRGTLALGSVNKIVLDEADEMLKMGFIEDVETL 168
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ V + + Q + SAT+P ++R + + +P ++ +
Sbjct: 169 LDTVAQ-----------------DYQLALFSATLPERIVRLTKRFMTNPAHIRIEG---- 207
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E + + +S + L A +++ P L +C TK
Sbjct: 208 ERTTLSNVEQVVLSVSEGTKLDRLCASINEEA--PYLAMVFCATK--------------- 250
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
TR L + +L RG L GDL + R+ L++F+ ++++L +
Sbjct: 251 ---------ERTRAL---MMELARRGYLVDALSGDLTQTQRAFVLRQFREAKLQILCATD 298
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ V N DLP Y HR GRTGR G G +++ + ++KM+
Sbjct: 299 IAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGAAGKAITLVAAHQHEKLRKMEGA 358
Query: 532 L 532
L
Sbjct: 359 L 359
>gi|409990969|ref|ZP_11274276.1| DEAD/DEAH box helicase [Arthrospira platensis str. Paraca]
gi|409938168|gb|EKN79525.1| DEAD/DEAH box helicase [Arthrospira platensis str. Paraca]
Length = 465
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 132/426 (30%), Positives = 199/426 (46%), Gaps = 67/426 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ SF LG+ LE GF PT VQ AIP +L DVV + TG+GKT A+ LPI
Sbjct: 2 SQSFESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPI 61
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV- 227
L ++ D + G I+A+++ P+REL MQ+ I+ SD A+ L
Sbjct: 62 LEQI----DVHAAG---------IQALVLTPTRELAMQVKEAIRTF---SDDNALYVLTV 105
Query: 228 -GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG + RQ + LR+ +VVGTPGRI ++ G+L R+LVLDE DE+LS F +
Sbjct: 106 YGGQSIDRQIQRLRRGV-QVVVGTPGRILDLLNRGELKLDSLRWLVLDEADEMLSMGFIQ 164
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ +I+E A RQT SAT+ S+ + R P+ V+ +
Sbjct: 165 DVEKILES----------------ADSEHRQTAFFSATMDASISKLVRRHLKSPVTVKVE 208
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
P P K+ +QS+ Y V + K L
Sbjct: 209 T-------PKATP------------------KRIEQSV-------YMVPRGWSKARALEP 236
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ D ++ I F+ + D +L+A G E HG+L + R L + + +VR
Sbjct: 237 ILELEDPESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRW 296
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
+V +++ARGLDV V+N DLP Y HR GRTGR GR G +++ + + ++
Sbjct: 297 IVATDIAARGLDVDHLTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLIQPIDRRKLR 356
Query: 527 KMQKQL 532
+++ L
Sbjct: 357 NIERHL 362
>gi|414071784|ref|ZP_11407745.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
gi|410805784|gb|EKS11789.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
Length = 464
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 185/407 (45%), Gaps = 61/407 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + +G+ PT +Q+ AIP+I++ DV+ + TG+GKT + LP++
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ +G K + A+I+ P+REL +Q+ +++ SD + + GG
Sbjct: 62 RLS---------SGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFV-VYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK I+V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMQRLRKGVD-ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ M A+RQ +M SAT FS
Sbjct: 171 LIAK-----------------MPAKRQNLMFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S + N AK Q + Y V K + K L +
Sbjct: 190 -DEIRALAKGLINDPVEISVAAKNTTAKSVTQCV-------YAVDKTR-KTALLSHLIRT 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V +LE + A +HG+ + AR L FK+GEVRVLV
Sbjct: 241 NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S
Sbjct: 301 DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFV 347
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 206/432 (47%), Gaps = 59/432 (13%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +F GL +L + +G+ V T +Q+ AIP +++ DV+ + TG+GKT + LP
Sbjct: 7 ADTTFDSFGLHADILRAITEQGYRVATPIQAQAIPVVMQGRDVMGAAQTGTGKTAGFSLP 66
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
I+ ++ P S+ S + + A+++ P+REL Q+ + K + A++ V
Sbjct: 67 IIQRLLPFASTST-----SPARHPVRALMLTPTRELADQVYDNVAKY---AKHTALRSTV 118
Query: 228 --GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285
GG + + Q LR+ I+V TPGR+ + ++ + LVLDE D +L F
Sbjct: 119 VFGGVDMNPQTAELRRGV-EILVATPGRLLDHVQQKTVNLSQVQMLVLDEADRMLDMGFL 177
Query: 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345
+ RI+ + A+RQT++ SAT + + A S+ DP+ ++
Sbjct: 178 PDLQRILN-----------------LLPAQRQTLLFSATFSGDIKKLAASYLRDPVTIEV 220
Query: 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405
+S++SN+ Q +P A K V L+ + +
Sbjct: 221 AR--------------------SNSASSNV--TQQVFMVPEARKQAAVVHLLKQRAE--- 255
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
L Q ++ F N+ +LE G+ A+ +HGD + R TL+ FK G +
Sbjct: 256 ---QGLPKQCIV-FTNSKLGCSRLARQLEREGINASAIHGDKTQSERMQTLEGFKQGTID 311
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525
LV +++ARGLD+A+ V+N DLP ++ Y HR GRTGR G G +S+C + ++
Sbjct: 312 ALVATDVAARGLDIADMPCVINFDLPYNAEDYVHRIGRTGRAGATGDAMSLCAPGDERLL 371
Query: 526 KKMQKQL--AVP 535
++K L AVP
Sbjct: 372 ADIEKLLKRAVP 383
>gi|359443658|ref|ZP_09233492.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
gi|358034494|dbj|GAA69741.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
Length = 464
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 185/407 (45%), Gaps = 61/407 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + +G+ PT +Q+ AIP+I++ DV+ + TG+GKT + LP++
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ +G K + A+I+ P+REL +Q+ +++ SD + + GG
Sbjct: 62 RLS---------SGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFV-VYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK I+V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMQRLRKGVD-ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ M A+RQ +M SAT FS
Sbjct: 171 LIAK-----------------MPAKRQNLMFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S + N AK Q + Y V K + K L +
Sbjct: 190 -DEIRALAKGLINDPVEISVAAKNTTAKSVTQCV-------YAVDKTR-KTALLSHLIRT 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V +LE + A +HG+ + AR L FK+GEVRVLV
Sbjct: 241 NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S
Sbjct: 301 DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFV 347
>gi|359435528|ref|ZP_09225727.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
gi|357917829|dbj|GAA61976.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
Length = 464
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 185/407 (45%), Gaps = 61/407 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + +G+ PT +Q+ AIP+I++ DV+ + TG+GKT + LP++
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ +G K + A+I+ P+REL +Q+ +++ SD + + GG
Sbjct: 62 RLS---------SGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFV-VYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK I+V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMQRLRKGVD-ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ M A+RQ +M SAT FS
Sbjct: 171 LIAK-----------------MPAKRQNLMFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S + N AK Q + Y V K + K L +
Sbjct: 190 -DEIRALAKGLINDPVEISVAAKNTTAKSVTQCV-------YAVDKTR-KTALLSHLIRT 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V +LE + A +HG+ + AR L FK+GEVRVLV
Sbjct: 241 NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S
Sbjct: 301 DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFV 347
>gi|168762636|ref|ZP_02787643.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4501]
gi|189367023|gb|EDU85439.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4501]
Length = 457
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 177/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL + E++ L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADHVASELRPLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|302387031|ref|YP_003822853.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
gi|302197659|gb|ADL05230.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
WM1]
Length = 485
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 190/409 (46%), Gaps = 65/409 (15%)
Query: 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188
G+++PTEVQ+ IP+ L+ +D+++++ TGSGKT AY +PI + L++K
Sbjct: 21 GYDIPTEVQARVIPAALEKNDLMVKAQTGSGKTAAYAIPICELIEWLENKP--------- 71
Query: 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
+A+I+ P+REL +Q+ + + KA + G + E+A K K +VV
Sbjct: 72 ----QALILTPTRELAVQVKEDFTNIGRFKRLKAAA--IYGRHSFSMEKAELKQKTHVVV 125
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
GTPGR+ + G L +LV+DE D +L F + + I++
Sbjct: 126 GTPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEAIMKE-------------- 171
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSG 368
+ ER T++ SAT+P V + + DP+ +
Sbjct: 172 ---LPMERMTMLFSATMPQEVKNMSLDYMRDPINIDV----------------------- 205
Query: 369 SSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428
S +N+ D H+ K + K + L + + + F + ++
Sbjct: 206 --SEANITTSDID--------HFLYYVKEEDKFELLNDVMIVEKPDSCMIFCSTKDRVDI 255
Query: 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488
+L+ G ++HG + + R +++K FK GE R L+ +L+ARG+D+ +V+N
Sbjct: 256 VCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRYLIATDLAARGIDIETISMVINY 315
Query: 489 DLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQ 537
D+P D +Y HR GRTGR G++G VS + + + +Q+ + IQ
Sbjct: 316 DIPLDKENYVHRPGRTGRAGQKGKAVSFLDPAQTRYLHDIQELIGFSIQ 364
>gi|258563984|ref|XP_002582737.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908244|gb|EEP82645.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 538
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 201/457 (43%), Gaps = 74/457 (16%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +SF LGL P L+ L PT +Q A IP ILK D + S TGSGKT+A+ P
Sbjct: 106 ADSSFTSLGLAPWLVGSLSAMAIRRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAP 165
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
IL + S I AV++ P+REL +QI + K + P K V L+
Sbjct: 166 ILHRW-------------SEDPFGIFAVVLTPTRELALQIFEQFKAISAPQSLKPV--LI 210
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFN 283
G + R + +P +V+ TPGR+A+ I +G+ G R +V DE D LL+
Sbjct: 211 TGGSEMRPQAIALSTRPHVVIATPGRLADHIKTSGEDTIFGLSRVRMVVFDEADRLLA-- 268
Query: 284 FREAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVPFSVIRAARSWGH 338
SG P SAL RQT++ +AT+
Sbjct: 269 ---------------SGPGSMVPDVETCLSALPPSTSRQTLLFTATL------------- 300
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
V L+SMP P + S N + ++PP LK Y +
Sbjct: 301 ------TPEVRALKSMPR--PKDRPPVFITEISTEN------NATIPPTLKQCYLQVPMT 346
Query: 399 HKVDTLRRCVHALD--AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456
H+ L + + ++ I F N T+ L G + LH L + R++ L
Sbjct: 347 HREAFLHVLLSTEENGSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNL 406
Query: 457 KKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
+F+ R+LV +++ARGLD+ LVVN D+P + Y HR GRT R GR G V++
Sbjct: 407 ARFRASAARLLVATDVAARGLDIPSVSLVVNFDVPRNPDDYIHRVGRTARAGREGEAVTL 466
Query: 517 CEEPEVFVV----KKMQKQLAVPIQACEFTEGRLVIG 549
+ +V +V ++ +Q+ V + EGR+V G
Sbjct: 467 VGQRDVQLVLAIEARVGRQMVVWEEEGVSIEGRIVRG 503
>gi|392536161|ref|ZP_10283298.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
Length = 464
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 185/407 (45%), Gaps = 61/407 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + +G+ PT +Q+ AIP+I++ DV+ + TG+GKT + LP++
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ +G K + A+I+ P+REL +Q+ +++ SD + + GG
Sbjct: 62 RLS---------SGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFV-VYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK I+V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMQRLRKGVD-ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ M A+RQ +M SAT FS
Sbjct: 171 LIAK-----------------MPAKRQNLMFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S + N AK Q + Y V K + K L +
Sbjct: 190 -DEIRALAKGLINDPVEISVAAKNTTAKSVTQCV-------YAVDKTR-KTALLSHLIRT 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V +LE + A +HG+ + AR L FK+GEVRVLV
Sbjct: 241 NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S
Sbjct: 301 DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFV 347
>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
Length = 480
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 191/414 (46%), Gaps = 65/414 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L ++ G+ PT +Q+ AIP +L+ DV+ + TG+GKT ++ LP+L+
Sbjct: 2 SFNTLGLSEKVLAAVDAAGYKDPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPMLT 61
Query: 171 KVGPLKDKSSNGNGESGKKTDI--EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
+ E G+ +I+ P+REL Q+ ++ G + K V L+G
Sbjct: 62 LL------------EKGRARARMPRTLILEPTRELAAQVQENFERY-GTNHKLNVALLIG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + + Q++ L + +++ TPGR+ + GKL G LV+DE D +L F +
Sbjct: 109 GVSFAEQDKKLDRGTD-VLIATPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI + + P + RQT+ SAT+P + R ++ +P ++
Sbjct: 168 ERICKLI----------PFT-------RQTLFFSATMPPEIQRLTETFLQNPARIEV--- 207
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
P S ++ N Q K A K Y K LR +
Sbjct: 208 ---------------APTSSTAENVTQQLKAA------GGKDY-------DKRVALRELL 239
Query: 409 H-ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
A D Q I F N R + LE LHGD+ + R L+ F+ G +++L
Sbjct: 240 EGAEDLQNAIVFCNRKRDISTLFRSLERHEYNVGALHGDMDQRTRMMMLENFRKGAIKLL 299
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
V ++++ARGLD+ E V N D+P ++ Y HR GRTGR GR GT ++ E +
Sbjct: 300 VASDVAARGLDIPEVSHVFNYDVPINAEDYVHRIGRTGRAGRSGTAYTLVTESD 353
>gi|343501974|ref|ZP_08739839.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|418479062|ref|ZP_13048155.1| hypothetical protein VT1337_11642 [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342816163|gb|EGU51067.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|384573612|gb|EIF04106.1| hypothetical protein VT1337_11642 [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 478
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 195/424 (45%), Gaps = 64/424 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ +E +G++ P+ +Q AIP++L DV+ + TG+GKT + LPIL +
Sbjct: 3 FTSLGLSAPILKAIEEQGYDKPSPIQEQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ NG K I A+++ P+REL Q+ + K K Q + GG
Sbjct: 63 LD---------NGLRVKGNHIRALVLTPTRELAAQVQENVFKY-SRHQKLTSQVVFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q LRK ++V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 113 VNPQMMKLRKG-CDVLVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + A+RQ ++ SAT + A+ ++P+ V
Sbjct: 172 LN-----------------LLPAKRQNLLFSATFSPEIRELAKGLVNNPVEV-------- 206
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S S N A +QS+ PA K + K L + +
Sbjct: 207 -----------------SVSKENSTAVTIEQSIYPADK--------RKKAPMLAKLIQDG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
+ Q + F F L G+ AA +HG+ + AR+ L FK+G++RVLV +
Sbjct: 242 NWQQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDIRVLVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG---TVVSICEEPEVFVVKKM 528
++ARG+D+ + VVN +LP S Y HR GRTGR G G ++V E E+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPHVSEDYVHRIGRTGRAGEVGKAYSLVEAAEASELFGIERL 361
Query: 529 QKQL 532
+Q+
Sbjct: 362 IQQV 365
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 204/426 (47%), Gaps = 57/426 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL P LL+ + G+ PT +Q AIP ++ DV+ + TG+GKT + LP+L
Sbjct: 2 SFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLH 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ + S+ S + A+I+AP+REL MQ+ +K ++V + GG
Sbjct: 62 RIARHANTST-----SPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVC-VYGGV 115
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q+ LR+ IV+ TPGR+ + ++ LVLDE D +L F + R
Sbjct: 116 DIRPQQAELRRGI-EIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKR 174
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + PK +RQ+++ SAT + R A +P L++ +
Sbjct: 175 ILALL----------PK-------QRQSLLFSATFSDEIKRLADQMLKEPQLIE----VA 213
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+M + ++ P+S S NL L H L+HK DT
Sbjct: 214 RRNMVSETITHVVHPVS-SGMKRNL------------LAHL-----LRHKPDT------- 248
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+ F++ LE G+ A +HGD G+ R+ TL+ FK+G++RVLV
Sbjct: 249 ----QALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLRVLVAT 304
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ E V+N +LP + Y HR GRTGR G G +S+ E + +++K
Sbjct: 305 DVAARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWLSEIEK 364
Query: 531 QLAVPI 536
+ + I
Sbjct: 365 LIKLQI 370
>gi|195938012|ref|ZP_03083394.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
EC4024]
Length = 457
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKDTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|357126434|ref|XP_003564892.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like
[Brachypodium distachyon]
Length = 571
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 184/418 (44%), Gaps = 58/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E P F E P ++ + + GF PT +QS P LK DV+ + TGS
Sbjct: 146 TVEGREVPKPIRYFQEANFPDYCMQAILKSGFVEPTPIQSQGWPMALKGRDVIGIAETGS 205
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL+Y+LP L VG + + G+G +I+AP+REL +QI E K G
Sbjct: 206 GKTLSYILPGLVHVG-AQPRLEQGDGPI-------VLILAPTRELAVQIQEESTKF-GSY 256
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ + GGA + Q LR+ IV+ TPGR+ ++ AG + +LVLDE D
Sbjct: 257 SRTRSTCIYGGAPKGPQIRDLRRGV-EIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADR 315
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +IV + R +RQT+ SAT P V AR +
Sbjct: 316 MLDMGFEPQIRKIVAQI-----------------RPDRQTLYWSATWPREVESLARQFLQ 358
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
+P V M G++ L+A + Q + + + +L
Sbjct: 359 NPYKV----------------------MIGTA---ELKANHSIQQIVEVISDHEKYPRLS 393
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
+ L +D ++ F ++ +L G A +HGD + R L +
Sbjct: 394 KLLSDL------MDGSRILIFFQTKKECDKVTRQLRMDGWPALSIHGDKAQSERDYVLSE 447
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK+G+ ++ +++ARGLDV + V+N D PT Y HR GRTGR G G +
Sbjct: 448 FKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTIEDYIHRIGRTGRAGATGMAFTF 505
>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
Length = 410
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/420 (29%), Positives = 201/420 (47%), Gaps = 62/420 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F EL L P +L+ LE+E + PT +Q AIP IL D++ + TG+GKT A+ +P L
Sbjct: 3 FKELNLIPSILKALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTLQL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ +G +G++ +I A+++ P+REL +QI G + GG +
Sbjct: 63 L------HKDGAPRAGRR-NIRALVITPTRELALQIYENFCAY-GKYLPLKCAVIFGGVS 114
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ QE AL+K I+V TPGR+ ++ + L+LDE D +L F + +I
Sbjct: 115 QKPQEAALQKGV-DILVATPGRLNDLMQQKLIDLKNVELLILDEADRMLDMGFIHDVKKI 173
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + P ++RQT++ SAT+P ++ + A S +P+ V+ + P+
Sbjct: 174 IA----------KTP-------SQRQTLLFSATMPDAIAQMADSILRNPVKVE---ITPV 213
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S T L G+ + + + P+++ T+ +H D L R H
Sbjct: 214 SSTVDTIGQYLYYVDKGNKRDLLIHLLKD-----PSIESAIVFTRTKHGADRLVR--HLT 266
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
AQ + A +HGD + AR T L+ FKN +RVLV +
Sbjct: 267 KAQ-----------------------VSAKAIHGDKSQGARQTALQDFKNRTLRVLVATD 303
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVVKKM 528
++ARG+D+ E V+N +LP Y HR GRTGR G+ G +S C E+P + ++K+
Sbjct: 304 IAARGIDIDELSHVINYELPNIPETYVHRIGRTGRAGQSGVAISFCDFDEKPYLADIEKL 363
>gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
Length = 509
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 206/432 (47%), Gaps = 65/432 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F LGL +L+ ++ +G++ P+ +Q AIP+IL+ DV+ + TG+GKT + LPIL +
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ G + I A+I+ P+REL Q+ + D + + GG
Sbjct: 63 LA---------KGPRVRANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAV-VFGGVK 112
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q LRK ++V TPGR+ ++ + + L+LDE D +L F + +I
Sbjct: 113 INPQMLRLRKGA-DVLVATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKI 171
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ AL + A+RQ ++ SAT + A+ ++P+ +
Sbjct: 172 L----------------AL-LPAKRQNLLFSATFSDEIRELAKGLVNNPIEI-------- 206
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S + +N A+ +Q + PA ++ K L + +
Sbjct: 207 -----------------SVNPANSTARTVEQCIYPA--------DVKKKPAMLAKLIKDG 241
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
D Q V+ F L +G+ AA +HG+ + AR+ L FK+GEVRVLV +
Sbjct: 242 DWQQVLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATD 301
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-IC--EEPEVFVVKKM 528
++ARG+D+ + VVN +LP + Y HR GRTGR G G +S +C E PE+F ++++
Sbjct: 302 IAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFAIERL 361
Query: 529 QKQLAVPIQACE 540
++L +P +A E
Sbjct: 362 IQEL-LPRKALE 372
>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
Length = 744
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 194/419 (46%), Gaps = 58/419 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
+L+ P + F + GLP ++E L+R+GF+ PT +Q+ +P L D+V + TGS
Sbjct: 107 TLKGREVPRPSMDFEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGS 166
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE-AVIVAPSRELGMQIVREIKKLLGP 217
GKTLAY++P L + + ES ++ D A+I+AP+REL QI +++ G
Sbjct: 167 GKTLAYVVPSLVHIQ---------HQESIRRGDGPIALILAPTRELAQQI-QQVATDFGS 216
Query: 218 SDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID 277
+ GGA + Q L + IV+ TPGR+ + G + C +LVLDE D
Sbjct: 217 RVSANNTCVFGGAPKGPQIRDLERGA-EIVIATPGRLIDFLERGITNLKRCTYLVLDEAD 275
Query: 278 ELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG 337
+L F + +I+ + R +RQ +M SAT P V + A +
Sbjct: 276 RMLDMGFEPQIRKIMGQI-----------------RPDRQVLMWSATWPKEVRQLAEEFL 318
Query: 338 HDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKL 397
D + + G ++ S++++ LQ + K +T++
Sbjct: 319 ADYIQINI------------------GSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEI 360
Query: 398 QHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLK 457
+ DT I F+ R++ D + G +A +HGD + R L
Sbjct: 361 SAEPDT-----------KTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLS 409
Query: 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
F+NG +LV +++ARGLDV + V+N D P++S Y HR GRTGR GT ++
Sbjct: 410 AFRNGRQGILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTL 468
>gi|339326719|ref|YP_004686412.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166876|gb|AEI77931.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 520
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 192/411 (46%), Gaps = 57/411 (13%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +F GL +L L +G+ PT +Q+ AIP +L D++ + TG+GKT + LP
Sbjct: 36 AVQTFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALP 95
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
I+ ++ PL + S+ S + + A+++ P+REL Q+ + + +D ++ +
Sbjct: 96 IIQRLLPLANASA-----SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRST-VVF 149
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + + Q +ALR+ I+V TPGR+ + ++ + LVLDE D +L F
Sbjct: 150 GGVDMNPQTDALRRGV-EILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPD 208
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ RI+ + A RQT++ SAT + R A S+ P+ ++
Sbjct: 209 LQRIIN-----------------LLPAHRQTLLFSATFSPEIKRLASSYLKHPVTIEV-- 249
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT--LR 405
S+++N +Q + K V L+ + + R
Sbjct: 250 --------------------ARSNSTNENVRQMVYLVEDGHKQAAVVHLLKQRAEQGLSR 289
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+C I F+N+ LE G+ AA +HGD + R TL+ FK+G +
Sbjct: 290 QC---------IVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGTID 340
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
LV +++ARGLD+ + VVN D+P + Y HR GRTGR G G +SI
Sbjct: 341 ALVATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSI 391
>gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895]
gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895]
Length = 457
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LP LE L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L +
Sbjct: 10 LPAAQLENLNELGYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+++++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAP 175
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
R RQT++ SAT P ++ + +PL ++ +V L
Sbjct: 176 SR-----------------RQTLLFSATWPEAIAAISGRVQQNPLTIEIDSVDAL----- 213
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
P+++ + T Q K+ L++ + +
Sbjct: 214 -----------------------------PSIEQQFFETSSQGKIPLLQKLLSQHQPASC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L + G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQSVCDALNSVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Ralstonia eutropha H16]
Length = 520
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 192/411 (46%), Gaps = 57/411 (13%)
Query: 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167
A +F GL +L L +G+ PT +Q+ AIP +L D++ + TG+GKT + LP
Sbjct: 36 AVQTFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALP 95
Query: 168 ILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227
I+ ++ PL + S+ S + + A+++ P+REL Q+ + + +D ++ +
Sbjct: 96 IIQRLLPLANASA-----SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRST-VVF 149
Query: 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
GG + + Q +ALR+ I+V TPGR+ + ++ + LVLDE D +L F
Sbjct: 150 GGVDMNPQTDALRRGV-EILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPD 208
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ RI+ + A RQT++ SAT + R A S+ P+ ++
Sbjct: 209 LQRIIN-----------------LLPAHRQTLLFSATFSPEIKRLASSYLKHPVTIEV-- 249
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT--LR 405
S+++N +Q + K V L+ + + R
Sbjct: 250 --------------------ARSNSTNENVRQMVYLVEDGHKQAAVVHLLKQRAEQGLSR 289
Query: 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465
+C I F+N+ LE G+ AA +HGD + R TL+ FK+G +
Sbjct: 290 QC---------IVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGTID 340
Query: 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
LV +++ARGLD+ + VVN D+P + Y HR GRTGR G G +SI
Sbjct: 341 ALVATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSI 391
>gi|397685501|ref|YP_006522820.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 10701]
gi|395807057|gb|AFN76462.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 10701]
Length = 459
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 204/428 (47%), Gaps = 65/428 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ +F +L L L L G+ T +Q+ ++P +LK D++ Q+ TGSGKT A+ + +
Sbjct: 3 STAFSDLPLGASTLANLASLGYAEMTPIQAQSLPIMLKGSDLIAQAKTGSGKTAAFGIAL 62
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L + P + +A+++ P+REL Q+ +E+++L +D + L G
Sbjct: 63 LEPLNP-------------RYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCG 109
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G Q +L ++ ++VGTPGR+ E G L G LVLDE D +L F +A+
Sbjct: 110 GVPIGPQIGSL-EHGAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAI 168
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ G P + RQT++ SAT P + + + ++ ++A
Sbjct: 169 AEII-------GQTP----------SRRQTLLFSATYPAGIEQLSAAF------MRAPQQ 205
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ +E+M + Q +Q + PA ++ + R +
Sbjct: 206 VRVEAM-----------------HDQKQIEQRFYEIDPA-----------GRMPAVMRIL 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
++ +AF +Q ++ V L A+G+ A LHGDL + R L F N + VLV
Sbjct: 238 AGFRPESCVAFCFTRQQCQELVEYLGAKGISAMALHGDLEQRDRDQVLAMFANRSLSVLV 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARGLD+ D+V+N++L DS + HR GRTGR G+RG VS+ E + +
Sbjct: 298 ATDVAARGLDIDALDMVINVELARDSEIHVHRIGRTGRAGKRGVAVSLVAPAEAHRARAI 357
Query: 529 QKQLAVPI 536
+++ P+
Sbjct: 358 EERQQAPL 365
>gi|343084223|ref|YP_004773518.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342352757|gb|AEL25287.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 410
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/431 (28%), Positives = 205/431 (47%), Gaps = 61/431 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L +L+ L+ + PT +Q+ AIP IL D++ + TG+GKT A+ LPI+
Sbjct: 2 TFEQLDLITPILKALQERNYKEPTAIQAQAIPKILAKRDILGSAQTGTGKTAAFSLPIIQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L + +N G K I+++IV P+REL +QI + G K + GG
Sbjct: 62 ---LLHTEKNNHKG----KLAIKSLIVTPTRELAIQIDENLA-YYGKYTKLKHAVIFGGV 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LR+ I+V TPGR+ ++ G + + VLDE D +L F
Sbjct: 114 KQGAQVNELRRG-VDILVATPGRLLDLINQGFIKLDQIKIFVLDEADRMLDMGF------ 166
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
+ + + P ++RQ++ SAT+P +++ A DP+ ++
Sbjct: 167 -INDIKKLLKLLP----------SKRQSLFFSATMPDNIVSLAGKILTDPVKIEV----- 210
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
P+S ++ KQ K YY T K D L +
Sbjct: 211 -------------NPVSSAAET----VKQ---------KVYY--TNKSSKKDLLFHILEN 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ V+ F + T+ D + + L+++ ++AA +HG+ + R L +FK G +RVLV
Sbjct: 243 KEIDQVLLF-SRTKHGADKITRNLKSKNIQAAAIHGNKAQNHRQKVLTQFKEGAIRVLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARG+D+ + V+N D+P D Y HR GR+GR G GT +S+CE E VK ++
Sbjct: 302 TDIAARGIDIDKLQYVINYDVPEDPETYVHRIGRSGRAGESGTAISLCEPEENAYVKLIE 361
Query: 530 KQLAVPIQACE 540
K ++ I +
Sbjct: 362 KLISQKISVVD 372
>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
Length = 464
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 185/407 (45%), Gaps = 61/407 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + +G+ PT +Q+ AIP+I++ DV+ + TG+GKT + LP++
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ +G K + A+I+ P+REL +Q+ +++ SD + + GG
Sbjct: 62 RLS---------SGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFV-VYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK I+V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMQRLRKGVD-ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ M A+RQ +M SAT FS
Sbjct: 171 LIAK-----------------MPAKRQNLMFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S + N AK Q + Y V K + K L +
Sbjct: 190 -DEIRALAKGLINDPVEISVAAKNTTAKSVTQCV-------YAVDKTR-KTALLSHLIRT 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V +LE + A +HG+ + AR L FK+GEVRVLV
Sbjct: 241 NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S
Sbjct: 301 DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGATGHAISFV 347
>gi|215486637|ref|YP_002329068.1| ATP-dependent RNA helicase DbpA [Escherichia coli O127:H6 str.
E2348/69]
gi|312966726|ref|ZP_07780944.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
gi|417755377|ref|ZP_12403466.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC2B]
gi|418996551|ref|ZP_13544153.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC1A]
gi|419001770|ref|ZP_13549313.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC1B]
gi|419007255|ref|ZP_13554701.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC1C]
gi|419013177|ref|ZP_13560536.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC1D]
gi|419017992|ref|ZP_13565309.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC1E]
gi|419023649|ref|ZP_13570885.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC2A]
gi|419028552|ref|ZP_13575732.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC2C]
gi|419034267|ref|ZP_13581360.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC2D]
gi|419039292|ref|ZP_13586339.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC2E]
gi|215264709|emb|CAS09083.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
O127:H6 str. E2348/69]
gi|312288190|gb|EFR16092.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
gi|377846125|gb|EHU11139.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC1A]
gi|377848290|gb|EHU13284.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC1C]
gi|377851430|gb|EHU16379.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC1B]
gi|377860037|gb|EHU24864.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC1D]
gi|377864381|gb|EHU29178.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC1E]
gi|377866448|gb|EHU31220.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC2A]
gi|377877330|gb|EHU41927.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC2B]
gi|377881962|gb|EHU46516.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC2C]
gi|377882072|gb|EHU46623.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC2D]
gi|377896026|gb|EHU60432.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
DEC2E]
Length = 457
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
D S + +++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 DVS---------LFQTQGLVLCPTRELADQVAGELRRLARFLLNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|423722013|ref|ZP_17696189.1| hypothetical protein HMPREF1078_00252 [Parabacteroides merdae
CL09T00C40]
gi|409242715|gb|EKN35475.1| hypothetical protein HMPREF1078_00252 [Parabacteroides merdae
CL09T00C40]
Length = 426
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 211/436 (48%), Gaps = 64/436 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L + + L++E + PT +Q+ AIP +L D++ + TG+GKT A+ +PI+
Sbjct: 9 TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ +++ S G +K I+A+I+ P+REL +QI E G + GG
Sbjct: 69 KI---EERISRG-----RKPGIKALILTPTRELAIQI-GESFTAYGRYTHVKHTVIFGGV 119
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q +AL + +++ TPGR+ ++ G + + VLDE D +L F + R
Sbjct: 120 GQKPQTDALERGVD-VLIATPGRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIKR 178
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ P P+ +RQ++ SAT+P + R A + H+P V+ V P
Sbjct: 179 IL----------PLLPR-------KRQSLFFSATMPPEIERLAGTILHEPEKVE---VTP 218
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ S T DQS+ Y V K++ K++ L+ +
Sbjct: 219 VSSTVDT----------------------IDQSV-------YFVEKVE-KINLLKNLLED 248
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++V+ F T+ D V + L G+ A +HG+ G+ AR L FK+ +RVL+
Sbjct: 249 RSLESVLVF-TRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRVLIA 307
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++RG+DV V+N DLP Y HR GRTGR GR G S C+ EV +K +Q
Sbjct: 308 TDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDIQ 367
Query: 530 KQLA--VPIQACEFTE 543
K + VP+ E
Sbjct: 368 KLIGKEVPVAGGHMFE 383
>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
gi|143462251|sp|A2RB17.1|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
Length = 467
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 195/426 (45%), Gaps = 65/426 (15%)
Query: 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168
+ +F ELG+ L E E G+ PT +Q +IP LK D++ + TGSGKT A+ LPI
Sbjct: 47 SKTFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPI 106
Query: 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228
L L +K G +++AP+REL QI + + L G S +VG
Sbjct: 107 LQ---ALMEKPQPFFG----------LVLAPTRELAYQISKSFESL-GASMGVRSCVIVG 152
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287
G + Q +L K KP I+V TPGR+ + + ++LV+DE D LL +F
Sbjct: 153 GMDMVSQSISLGK-KPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPL 211
Query: 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347
+ +I++ + R ER+T + SAT+ V R+
Sbjct: 212 LDKILKVLPR-----------------ERRTFLFSATMSSKVESLQRA------------ 242
Query: 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
+LS P+ S S S Q ++ L+ Y + + +HK L
Sbjct: 243 -------------SLSNPLRVSVSTSKYQ------TVSTLLQSYLFIPQ-KHKDLYLVYL 282
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
++ Q+ I F + + F L A G A LHG L + AR L KF+ +L
Sbjct: 283 LNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNIL 342
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+ D+V+N DLP DS Y HR GRT R G+ G +S + +V V +
Sbjct: 343 VATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLR 402
Query: 528 MQKQLA 533
++ L
Sbjct: 403 IEGALG 408
>gi|423343393|ref|ZP_17321106.1| hypothetical protein HMPREF1077_02536 [Parabacteroides johnsonii
CL02T12C29]
gi|409215468|gb|EKN08468.1| hypothetical protein HMPREF1077_02536 [Parabacteroides johnsonii
CL02T12C29]
Length = 425
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 212/436 (48%), Gaps = 64/436 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L + + L++E + PT +Q+ AIP +L D++ + TG+GKT A+ +PI+
Sbjct: 8 TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPIIQ 67
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ +++ S S +K I+A+++ P+REL +QI E G + GG
Sbjct: 68 KI---EEQIS-----SRRKPGIKALVLTPTRELAIQI-GESFTAYGCYTHVKHTVIFGGV 118
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q +AL + +++ TPGR+ ++ + G + + VLDE D +L F + R
Sbjct: 119 GQKPQTDALERGVD-VLIATPGRLLDLLSQGFIRLDTLEYFVLDEADRMLDMGFIHDIKR 177
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ P PK +RQ++ SAT+P + R A + H+P V+ V P
Sbjct: 178 IL----------PLLPK-------KRQSLFFSATMPPEIERLAGTILHEPEKVE---VTP 217
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ S T DQS+ Y V K++ K++ L+ +
Sbjct: 218 VSSTVDT----------------------IDQSV-------YFVEKVE-KINLLKNLLED 247
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++V+ F T+ D V + L G+ A +HGD G+ AR L FK+ +RVL+
Sbjct: 248 RSLESVLVF-TRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRVLIA 306
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++RG+DV V+N DLP Y HR GRTGR GR G S C+ EV +K +Q
Sbjct: 307 TDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDIQ 366
Query: 530 KQLA--VPIQACEFTE 543
K + VP+ E
Sbjct: 367 KLIGKDVPVAGGHMFE 382
>gi|359456093|ref|ZP_09245284.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
gi|358046842|dbj|GAA81533.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
Length = 464
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 185/407 (45%), Gaps = 61/407 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L+ + +G+ PT +Q+ AIP+I++ DV+ + TG+GKT + LP++
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ +G K + A+I+ P+REL +Q+ +++ SD + + GG
Sbjct: 62 RLS---------SGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFV-VYGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK I+V TPGR+ ++ + LVLDE D +L F + R
Sbjct: 112 KINPQMQRLRKGVD-ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKR 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
++ M A+RQ +M SAT FS
Sbjct: 171 LIAK-----------------MPAKRQNLMFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S + N AK Q + Y V K + K L +
Sbjct: 190 -DEIRALAKGLINDPVEISVAAKNTTAKSVTQCV-------YAVDKTR-KTALLSHLIRT 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F V +LE + A +HG+ + AR L FK+GEVRVLV
Sbjct: 241 NDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517
++ ARGLD+ E VVN DLP Y HR GRTGR G G +S
Sbjct: 301 DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFV 347
>gi|423345822|ref|ZP_17323511.1| hypothetical protein HMPREF1060_01183 [Parabacteroides merdae
CL03T12C32]
gi|409221557|gb|EKN14506.1| hypothetical protein HMPREF1060_01183 [Parabacteroides merdae
CL03T12C32]
Length = 426
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 211/436 (48%), Gaps = 64/436 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F +L L + + L++E + PT +Q+ AIP +L D++ + TG+GKT A+ +PI+
Sbjct: 9 TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQ 68
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K+ +++ S G +K I+A+I+ P+REL +QI E G + GG
Sbjct: 69 KI---EERISRG-----RKPGIKALILTPTRELAIQI-GESFTAYGRYTHVKHTVIFGGV 119
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q +AL + +++ TPGR+ ++ G + + VLDE D +L F + R
Sbjct: 120 GQKPQTDALERGVD-VLIATPGRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIKR 178
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ P P+ +RQ++ SAT+P + R A + H+P V+ V P
Sbjct: 179 IL----------PLLPR-------KRQSLFFSATMPPEIERLAGTILHEPEKVE---VTP 218
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ S T DQS+ Y V K++ K++ L+ +
Sbjct: 219 VSSTVDT----------------------IDQSV-------YFVEKVE-KINLLKNLLED 248
Query: 411 LDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
++V+ F T+ D V + L G+ A +HG+ G+ AR L FK+ +RVL+
Sbjct: 249 RSLESVLVF-TRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRVLIA 307
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
++++RG+DV V+N DLP Y HR GRTGR GR G S C+ EV +K +Q
Sbjct: 308 TDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDIQ 367
Query: 530 KQLA--VPIQACEFTE 543
K + VP+ E
Sbjct: 368 KLIGKEVPVAGGHMFE 383
>gi|171686908|ref|XP_001908395.1| hypothetical protein [Podospora anserina S mat+]
gi|170943415|emb|CAP69068.1| unnamed protein product [Podospora anserina S mat+]
Length = 576
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 218/464 (46%), Gaps = 68/464 (14%)
Query: 87 RSDGIKAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK 146
+++ +KA + + + + + +F LG+ P L++ L PT +Q +IP +LK
Sbjct: 122 KAEAVKATLPEPTTGVTVSTDSNTTFESLGVRPWLVQSLANMAIKRPTAIQRESIPMLLK 181
Query: 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206
D + S TGSGKT+A+ +PIL + + + I VI+ P+REL +Q
Sbjct: 182 GRDCIGGSRTGSGKTVAFSVPILQQW-------------AENPSAIFGVILTPTRELALQ 228
Query: 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHT 265
I ++K + P KA+ + GGA+ Q AL +P IV+ TPGR+A+ I +G
Sbjct: 229 IFEQVKAISSPHSLKAI-LVTGGADMRAQAIAL-AQRPHIVIATPGRLADHIRTSGYDTV 286
Query: 266 HG---CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVS 322
G RF+VLDE D LL+ N +M VE E SAL +RQT++ +
Sbjct: 287 CGLGRVRFVVLDEADRLLADNGPGSMLPDVE-----------ECLSALPPAEKRQTLLFT 335
Query: 323 ATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ 382
AT+ + V+ L++MP PG P+ ++ A
Sbjct: 336 ATI-------------------TQEVMALKNMPRK-PGR--EPVFVCEVDTEKLA----- 368
Query: 383 SLPPALKHYYCVTKLQHKVDTL------RRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR 436
+PP LK + + H+ L + VH +++I F N T L
Sbjct: 369 -IPPTLKQMHLQVPVTHREHYLHMFLLTEQNVH----KSIIIFCNRTSTADFLHHLLRLL 423
Query: 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496
+ LH L + R L +F+ R+LV +++ARGLD+ E +V+N D+P D
Sbjct: 424 DHRITSLHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPEVKMVINYDIPRDPDD 483
Query: 497 YAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACE 540
Y HR GRT R GR+G V+ + +V +V ++ ++ ++A E
Sbjct: 484 YIHRVGRTARAGRKGDAVTFVGQRDVDLVLAIEDRVGRKMEAWE 527
>gi|143361556|sp|Q5QMN3.2|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
Length = 494
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 121/418 (28%), Positives = 189/418 (45%), Gaps = 58/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E P F ++G P +L+ + + GF PT +QS P L+ D++ + TGS
Sbjct: 80 TVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGS 139
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTLAYLLP + V + + G+G +++AP+REL +QI +E K G S
Sbjct: 140 GKTLAYLLPAIVHVN-AQPILAPGDGPI-------VLVLAPTRELAVQIQQEATK-FGAS 190
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
K + GG + Q L+K IV+ TPGR+ ++ + + +LVLDE D
Sbjct: 191 SKIKSTCIYGGVPKGPQVRDLQKGV-EIVIATPGRLIDMIESHHTNLRRVTYLVLDEADR 249
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +IV + R +RQT+ SAT P V + AR++
Sbjct: 250 MLDMGFEPQIKKIVSQI-----------------RPDRQTLYWSATWPKEVEQLARNFLF 292
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
DP K +I E + A N Q + L + K+ V L+
Sbjct: 293 DPY----KVIIGSEELKA-----------------NHAISQHVEILSESQKYNKLVNLLE 331
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
+D ++ FM+ + +L G A +HGD + R L +
Sbjct: 332 ----------DIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSE 381
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK+G+ ++ +++ARGLDV + V+N D P Y HR GRTGR G +GT +
Sbjct: 382 FKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 439
>gi|419142001|ref|ZP_13686748.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6A]
gi|377996310|gb|EHV59418.1| ATP-independent RNA helicase dbpA [Escherichia coli DEC6A]
Length = 457
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ T SGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTCSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIEQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG RVLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon]
Length = 392
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 191/426 (44%), Gaps = 68/426 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELG+ +L+ +E EGF PTE+Q +I IL DV+ ++ TGSGKTLA+ I+
Sbjct: 3 SFKELGIIEPILKSIEEEGFERPTEIQEKSISLILSGKDVIAEAATGSGKTLAFAADIIE 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K + K T I +++ P+REL Q+ + L + + GG
Sbjct: 63 K--------------TEKGTGIRTLVLTPTRELAQQVAAALS-LFSKYKPLRIVAVFGGV 107
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ + Q LR+ +VVGTPGRI + L+ LVLDE D +L F + +
Sbjct: 108 SINPQITQLRRAD--VVVGTPGRILDHIGRRTLNLSKVNILVLDEADRMLDMGFIPDVKK 165
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
IV G PR RQT++ SAT+ + AR + DP+ V A+ +
Sbjct: 166 IV-------GECPRN----------RQTLLFSATISREITVLARKYQKDPISVSAEAYV- 207
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
P L+ Q +P LK V L+H+
Sbjct: 208 -------DPSKLT---------------QLYYDVPDNLKFSLLVHLLKHE---------- 235
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
+++ V+ F N L+A G+ A +HG L + R +K+F + +VRVLV
Sbjct: 236 -ESELVMVFCNTRTNTDFVASNLKALGIGAMAIHGGLTQDKRDRVMKQFHSHDVRVLVCT 294
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ + N D+P Y HR GRT R G+ G ++I + +++ K
Sbjct: 295 DVAARGLDIPHVSHIYNYDIPMYGKDYIHRIGRTARAGKDGVAINILASRDYDSFRRVMK 354
Query: 531 QLAVPI 536
V I
Sbjct: 355 SNEVTI 360
>gi|449433363|ref|XP_004134467.1| PREDICTED: uncharacterized protein LOC101206109 [Cucumis sativus]
Length = 1152
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 186/415 (44%), Gaps = 61/415 (14%)
Query: 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAY 164
APF +F G PP +L + GF+ PT +Q+ P L+ D+V + TGSGKTL Y
Sbjct: 502 APFM--TFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGY 559
Query: 165 LLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224
LLP + ++ NG +++AP+REL QI E K G S +
Sbjct: 560 LLPAFILLRQCRNNPQNG---------PTVLVLAPTRELATQIQDEAIK-FGRSSRVCCT 609
Query: 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284
L GGA + Q + L + IVV TPGR+ +I ++ LVLDE D +L F
Sbjct: 610 CLYGGAPKGPQLKELDRGA-DIVVATPGRLNDILEMKMINFRQISLLVLDEADRMLDMGF 668
Query: 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
+ +IV + R RQT+M +AT P V + A LLV
Sbjct: 669 EPQIRKIVNEIPPR-----------------RQTLMYTATWPKEVRKIAND-----LLVN 706
Query: 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404
+ V N+ S L A + A+ Y V K L
Sbjct: 707 SVQV------------NI-------GSVDELAANK-------AITQYVEVVPQMEKQRRL 740
Query: 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
+ + + + + + +T++L D + + RG AA +HGD + R L +F++G+
Sbjct: 741 EQILRSQERGSKVIIFCSTKRLCDQLARNLGRGFGAAAIHGDKSQGERDWVLNQFRSGKS 800
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+LV +++ARGLD+ + +V+N D PT Y HR GRTGR G G + E
Sbjct: 801 PILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHRIGRTGRAGATGVAYTFFSE 855
>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 453
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 183/411 (44%), Gaps = 61/411 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F + GL +L L+ PT +Q AIP IL+ HD++ + TGSGKT A+ LPIL
Sbjct: 29 TFSKFGLDQEILSALDTLELTAPTSIQEQAIPEILQGHDLIATAQTGSGKTAAFCLPILQ 88
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
LKD GE K + +I+AP+REL +Q+ IK Q++ G
Sbjct: 89 ---ALKD------GEKAKPNHVRCLIIAPTRELAIQLNANIKAF--NEHLTLRHQVIFGG 137
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
R + K I+V TPGR+ ++ G + LVLDE D LL F + + +
Sbjct: 138 VRVLPQRKYLKRGSDILVATPGRLLDLHQRGDILFDSLTHLVLDEADRLLDLGFAKELDQ 197
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ A+ +RQT++ SAT + + A+ +L Q K+V
Sbjct: 198 IIQ-----------------ALPKQRQTLLFSATFAPPIKKLAKK-----ILNQPKDVTT 235
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
++ + + N N Q L P K K + ++ L R HA
Sbjct: 236 IQK-------------AAAKPNIN-------QWLHPVDKK----RKTELLLELLNRKPHA 271
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
VI F N + L G+ A LH D + R +FKN E+ +LV
Sbjct: 272 ----QVIVFTNTKKNADLVAQALNQDGISAGALHSDRTQDERIHVFDQFKNNEISILVAT 327
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+++ARG+D+ LV+N DLP S Y HR GRTGR G G SI E
Sbjct: 328 DVAARGIDIQNLPLVINYDLPKVSEDYIHRIGRTGRAGHAGQAFSIASADE 378
>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
Length = 399
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 192/409 (46%), Gaps = 61/409 (14%)
Query: 122 LERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN 181
+E L+ +G++ P+ +Q+ AIP+++ DV+ + TG+GKT + LP+L ++
Sbjct: 1 MEALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLR-------- 52
Query: 182 GNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRK 241
+G+ + I A+++ P+REL Q++ +K ++ + GG + Q + LR
Sbjct: 53 -HGKRAGRAQIRALVLTPTRELAAQVLENVKAYSRHLPLRS-DVVFGGVKANPQIDRLRG 110
Query: 242 NKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGA 301
++V TPGR+ ++ G L LVLDE D +L F + R++
Sbjct: 111 GVD-LLVATPGRLLDLHQQGALRFDQLECLVLDEADRMLDMGFIHDIRRLIR-------- 161
Query: 302 NPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGN 361
M A+RQT++ SAT + + A HDP+ +Q V P
Sbjct: 162 ---------LMPAKRQTLLFSATFSAPIRKLASGLLHDPVHLQ---VTP----------- 198
Query: 362 LSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMN 421
N A+ +Q + P C + K D L + + + V+ F
Sbjct: 199 -----------ENQTARSVEQVVHP------C--DMARKSDLLSHLIRTGEWRQVLVFSR 239
Query: 422 NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAE 481
+L G+ AA +HG+ + AR+ L+ FK G VRVLV +++ARG+D+ +
Sbjct: 240 TKHGANRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQGSVRVLVATDIAARGIDIQQ 299
Query: 482 CDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
VVNLDLP + Y HR GRTGR G G VS+ E ++K +++
Sbjct: 300 LPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIER 348
>gi|429736828|ref|ZP_19270704.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Selenomonas sp. oral taxon 138 str. F0429]
gi|429153808|gb|EKX96573.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Selenomonas sp. oral taxon 138 str. F0429]
Length = 421
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 199/421 (47%), Gaps = 65/421 (15%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +LG+ L L+++G PT VQ AIP + DV+ Q+ TG+GKTLA+LLP+L+K
Sbjct: 4 FDQLGVSETLCALLKKQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAFLLPLLAK 63
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ P G + +A+++AP+REL +QI R + + LG + GGA+
Sbjct: 64 IKP--------QGAAA-----QALVIAPTRELAIQIAR-VAEPLGAELGIGTIVIYGGAD 109
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
RQ+E LR++ P +V+GTPGR+ + G L +VLDE DE+L F E + +
Sbjct: 110 IERQKEKLRRH-PQLVIGTPGRLLDHVRRGTLALGSVNKIVLDEADEMLKMGFIEDVETL 168
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
++ V + + Q + SAT+P ++R + + +P ++ I
Sbjct: 169 LDTVAQ-----------------DYQLALFSATLPERIVRLTKRFMTNPAHIR----IEG 207
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
E + + +S + L A +++ P L +C TK
Sbjct: 208 ERTTLSNVEQVVLSVSEGTKLDRLCASINEEA--PYLAMVFCATK--------------- 250
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
TR L + +L RG L GDL + R L++F+ ++++L +
Sbjct: 251 ---------ERTRAL---MMELARRGYLVDALSGDLTQTQRGFVLRQFREAKLQILCATD 298
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARGLD+ V N DLP Y HR GRTGR G G +++ + ++KM+
Sbjct: 299 IAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGAAGKAITLVAAHQHEKLRKMEAA 358
Query: 532 L 532
L
Sbjct: 359 L 359
>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
2-40]
gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
Length = 516
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 190/419 (45%), Gaps = 57/419 (13%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F ELGL P + + + +G+ PT +Q+ AIP +L+ DV+ + TG+GKT + LPIL
Sbjct: 20 FAELGLCPAIQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGFTLPILEI 79
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ NG K A+++ P+REL Q+ + L G + GG
Sbjct: 80 LA-----EGIENGRKVKPNQARALVLTPTRELAAQVGENV-ALYGKYLPIKSTIVFGGVK 133
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
+ Q LR I+V TPGR+ ++ + LVLDE D +L F + +I
Sbjct: 134 INPQMMKLRGGV-DILVATPGRLMDLYNQRAVKFDQLEMLVLDEADRMLDMGFIHDIRKI 192
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + ++ RQ +M SAT + A+S ++P+ +
Sbjct: 193 MAILPKK-----------------RQNLMFSATFSQDIRELAKSIVNNPVEI-------- 227
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
++ P S ++ +K + C + K L +
Sbjct: 228 ---------TVNPPNSTATR----------------VKQWICPVDKKEKPALLTHLIKTN 262
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
Q V+ F V +LE G++AA +HG+ + AR+ L +FKNG V++LV +
Sbjct: 263 KWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALAEFKNGTVKILVATD 322
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
++ARGLD+ + VVN DLP + Y HR GRTGR G G VS+ E ++K++++
Sbjct: 323 IAARGLDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGNAVSLVSADEFQMLKEIER 381
>gi|396493590|ref|XP_003844093.1| similar to ATP-dependent RNA helicase dbp8 [Leptosphaeria maculans
JN3]
gi|312220673|emb|CBY00614.1| similar to ATP-dependent RNA helicase dbp8 [Leptosphaeria maculans
JN3]
Length = 505
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 211/447 (47%), Gaps = 66/447 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
F L + P L+ L PT +Q A IP ILK D + S TG+GKT+A+ +PIL
Sbjct: 77 DFASLDVAPWLVASLASMEIKKPTGIQQACIPEILKGRDCIGGSRTGTGKTVAFSVPILQ 136
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
K +D S I +I+ P+REL +QI ++K + P K + LV G
Sbjct: 137 KWA--EDPSG-----------IFGLIITPTRELAIQIYEQVKAISAPQSMKPI--LVTGG 181
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHG---CRFLVLDEIDELLSFNFRE 286
+ R++ ++P IV+ TPGR+AE I +G+ G RF+V DE D LL+ +
Sbjct: 182 SDQREQAIALASRPHIVIATPGRLAEHIRTSGEDTICGLRRVRFVVFDEADRLLAPG-KG 240
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+M +E S L + +RQT++ +ATV +
Sbjct: 241 SMLPDLETC-----------LSVLPPKEKRQTLLFTATV-------------------TQ 270
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
V+ L+ P PG L P+ S ++ A +PP L+ Y T + HK L
Sbjct: 271 EVLALKDQPR--PGRL--PIFISEVDTETLA------IPPKLQQKYLQTPVTHKECYLHV 320
Query: 407 CVHALD--AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464
++ + ++VI F N T+ + L + LH L + R L +F+
Sbjct: 321 LLNTPENLKKSVIIFCNRTKTATLLEYMLRLLEHRVTALHSGLKQSDRVGNLARFRAQAA 380
Query: 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524
R+LV +++ARGLD+ E LV+N D+P D Y HR GRT R GR GT +++ + +V +
Sbjct: 381 RILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRVGTSITLVGQRDVEL 440
Query: 525 VKKMQKQLAVPIQACE----FTEGRLV 547
+ ++ ++ ++ E EGR+V
Sbjct: 441 ILAIETRVGKKMEEFEEEGVSVEGRVV 467
>gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium profundum 3TCK]
gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein
[Photobacterium profundum 3TCK]
Length = 422
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 202/425 (47%), Gaps = 59/425 (13%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL L++ + GF PT +Q AIP +L D++ + TG+GKT A+ LP++
Sbjct: 2 SFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMIQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--G 228
++ +S + G K I A+++ P+REL Q+ I L S +++ V G
Sbjct: 62 RLLA-SQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSI---LAYSKNTSIKVAVAYG 117
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
G + Q +AL K+ I++ TPGR+ + + G + LVLDE D +L F +
Sbjct: 118 GTSMGVQVKAL-KSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDI 176
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RI++ + R+ RQT++ SAT V + A DP L++ V
Sbjct: 177 KRIMQRMPRK-----------------RQTLLFSATFSNQVKKLAYDILADPKLIE---V 216
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
P N+ A+ Q + P KH K + L +
Sbjct: 217 TP----------------------ENIAAESVTQMVYPVDKH--------RKRELLSYLI 246
Query: 409 HALDAQTVIAFMNNTRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ + V+ F T+Q D + K L G+KA ++GD + AR L FK G+VR +
Sbjct: 247 GSRNWNQVLIF-TKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEGKVRAM 305
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527
V +++ARGLD+ + VVN DLP + Y HR GRTGR G G+ +S+ E + ++
Sbjct: 306 VATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSIDEEWALRA 365
Query: 528 MQKQL 532
+++ L
Sbjct: 366 IEELL 370
>gi|356511678|ref|XP_003524550.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Glycine
max]
Length = 774
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/434 (29%), Positives = 195/434 (44%), Gaps = 59/434 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
S+ ++ P SF G P LL ++ GF+ PT +Q+ + P L+ D+V + TGS
Sbjct: 157 SVTGDNVPPPLASFGSTGFPSELLREVQNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGS 216
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL YL+P + K S N + G A++++P+REL QI E K G S
Sbjct: 217 GKTLGYLVPAFIHL-----KRSGNNSKMGPT----ALVLSPTRELATQIQDEAVKF-GKS 266
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ + L GGA + Q + + IVV TPGR+ +I ++ + +LVLDE D
Sbjct: 267 SRISCACLYGGAPKGPQLRDIDRGA-DIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 325
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +IV V R RQT+M +AT P V + A
Sbjct: 326 MLDMGFEPQIRKIVNEVPNR-----------------RQTLMFTATWPKEVRKIAADLLV 368
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
P+ V NV L + N Q + LPP K +L+
Sbjct: 369 KPVQVNIGNVDELVA--------------------NKSITQHVEVLPPMEKQ----RRLE 404
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
H + + D+ + I +T+++ D + + R AA +HGD + R L +
Sbjct: 405 H-------ILRSQDSGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQ 457
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
F+ G VLV +++ARGLD+ + +VVN D PT Y HR GRTGR G G +
Sbjct: 458 FRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFG 517
Query: 519 EPEVFVVKKMQKQL 532
+ + + K L
Sbjct: 518 DHDAKYASDLIKVL 531
>gi|255072011|ref|XP_002499680.1| predicted protein [Micromonas sp. RCC299]
gi|226514942|gb|ACO60938.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 442
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 184/405 (45%), Gaps = 49/405 (12%)
Query: 114 ELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG 173
E G+P + L+ G T VQ P DV+ + GSGKTLAYLLP +
Sbjct: 2 EAGVPDYFTDALKTLGHKRTTPVQRECWPPACVGRDVLGIAPPGSGKTLAYLLPAVEFA- 60
Query: 174 PLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS 233
++D N + A+++AP+REL QI KL + + V + GGA++S
Sbjct: 61 -MRDARDNPRKKRDPPGRPSALVIAPTRELTQQIASVCNKLKRAAPVRCVA-VYGGASQS 118
Query: 234 RQEEALRK--NKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
QE+ L + + +VVGTPGR+ + G L R LVLDE D +L+ F E + +I
Sbjct: 119 EQEDELAQPTSMATLVVGTPGRLLAVMGTGALGLERARLLVLDEADRMLALGFAEQLEQI 178
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
E + R RQT+M SAT P V A++W L
Sbjct: 179 REAL----------------PRPGRQTLMFSATFPKGVRAVAKAW--------------L 208
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
PA G G +G ++ DQ++ +H L+H + LR+
Sbjct: 209 APKPAIGDGVAAGDLN------------VDQTVHVCAEHKKGRKLLKH-ITELRKN-DGR 254
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
V+ F N + + L+ G K LHG+L + R LK FK+G+ VLV +
Sbjct: 255 SKSRVLVFANRIKTVNFVGDLLKRHGEKVCTLHGELKQERRDQALKDFKSGKSPVLVATD 314
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
++ RGLD+ + VVN D+P Y HR GR GR GR+G +S
Sbjct: 315 VAGRGLDITGLEHVVNWDMPGSVEQYTHRVGRAGRSGRKGAALSF 359
>gi|167625028|ref|YP_001675322.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355050|gb|ABZ77663.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 437
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 198/404 (49%), Gaps = 59/404 (14%)
Query: 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186
++G+ PT +Q+ AIP+IL D++ + TG+GKT A+ LP+L + L DKSS+
Sbjct: 42 QKGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQR---LIDKSSSDEQSK 98
Query: 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAI 246
K+ + +++AP+REL +Q+ + + +D ++ + GG + Q L +
Sbjct: 99 AKRASV--LVLAPTRELAVQVNTNVSQYAVNTDVSSIV-IYGGVSIDAQATKLAAGVD-V 154
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREP 306
+V TPGR+ + G L+ +LV DE D +L F + ++ I++
Sbjct: 155 IVATPGRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQ------------ 202
Query: 307 KSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPM 366
+ A+RQT++ SAT ++ ++ PL ++
Sbjct: 203 -----LPAKRQTLLFSATFSSAIFELSKKLLQKPLRIEVDK------------------- 238
Query: 367 SGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQL 426
+ S++NS Q A S + K + L ++ Q V+ F + +Q
Sbjct: 239 ANSAANSIEQVVYAVDS--------------ERKTELLCHLINKSAWQQVLVF-SRKKQT 283
Query: 427 KDAVF-KLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLV 485
D + K+ A G++A HGDLG+ AR L FK G+++ LV +++ARGLD+ E +V
Sbjct: 284 ADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVELKVV 343
Query: 486 VNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
VN ++P + Y HR GRTGR G G +++ E + ++++++
Sbjct: 344 VNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVE 387
>gi|440292099|gb|ELP85341.1| ATP-dependent RNA helicase HAS1, putative [Entamoeba invadens IP1]
Length = 566
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 213/457 (46%), Gaps = 63/457 (13%)
Query: 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLA 163
S+ F L L + + L+ GF T +Q P +L DV+ ++ TGSGKTLA
Sbjct: 100 SSFLTERKFSALKLSDEVQDALDEAGFTFMTTIQERTAPLLLTGRDVLAKARTGSGKTLA 159
Query: 164 YLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK-KA 222
YL+P+L + +K S NG G A+I++P+REL +QI ++KL+ S++ KA
Sbjct: 160 YLVPVLDLLNKIKFTSRNGTG---------AIIISPTRELALQIYEVLEKLMQNSERSKA 210
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLS 281
+ L+GG + + EE L +N +VV TPGR+ + +S + LV+DE D +L
Sbjct: 211 L--LIGGNPKKKDEEVL-ENGACVVVATPGRLLDHLSNTRCFLFKNLKCLVIDEADRILE 267
Query: 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
F + M +I+ R PK+ RQT++ SAT V A DP+
Sbjct: 268 AGFEDEMRQILN----------RLPKN-------RQTMLFSATQTDKVEDMANLSLKDPV 310
Query: 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKV 401
V + ES S ++++S LQ Y + + + +
Sbjct: 311 FVNVE-----ES-------------STTATSSKLQ-------------QGYVLVESKDRF 339
Query: 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461
L + + +I FM++ +K L LHG L + R+ +KF
Sbjct: 340 RLLYTFLRKYKGKKMIVFMSSCNAVKFYSNLLNYIDTPVLSLHGQLKQDKRTKVFEKFCK 399
Query: 462 GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
+ +L+T +++ARGLD+ E D ++ +DLP Y HR GRT R G V + E
Sbjct: 400 TKNCILLTTDVAARGLDIPEVDWIIQMDLPDGPTEYIHRVGRTARADTEGKAVMFLQPTE 459
Query: 522 VFVVKKMQKQLAVPIQACEFTEGRLVIGKEEEKTLEA 558
+ ++K M K+ +P+ E E ++ ++E + L A
Sbjct: 460 IAMLKYM-KEKQIPLTQYEVPEKKIANVQQELEKLVA 495
>gi|194334361|ref|YP_002016221.1| DEAD/DEAH box helicase [Prosthecochloris aestuarii DSM 271]
gi|194312179|gb|ACF46574.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
DSM 271]
Length = 418
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 198/425 (46%), Gaps = 60/425 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F L + + L EG+ PT +Q+ AIP IL+ D++ + TG+GKT A+ +P+L
Sbjct: 3 FSSLNIIDPIARALREEGYATPTPIQAEAIPVILEGSDLLGCAQTGTGKTAAFAIPLLQL 62
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
+ S E KK I A++V P+REL +QI E K G + + GG N
Sbjct: 63 L------SERNTYE--KKRKIRALVVTPTRELAIQI-GESFKAYGRHTGLTNRVIFGGVN 113
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
++ Q +LR N IVV TPGR+ ++ G LH LVLDE D +L F + +I
Sbjct: 114 QNPQAASLR-NGVDIVVATPGRLLDLMGQGHLHLRDVEILVLDEADRMLDMGFIHDIRKI 172
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ A+ ++Q++ SAT+P ++R A + H+P V +V P+
Sbjct: 173 LA-----------------ALPEKKQSLFFSATMPSEIVRLAGTILHNPAKV---SVTPV 212
Query: 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL 411
S T + G + N L DQS+ AL T+ +H D
Sbjct: 213 SSTVETIQQQVYFVDKG-NKNRLLVHLLKDQSIKTAL----VFTRTKHGAD--------- 258
Query: 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471
V+ F+ LK + A +HG+ G+ AR L FK RVLV +
Sbjct: 259 ---KVVKFL-----LK--------HDITAEAIHGNKGQNARQRALNNFKKQSTRVLVATD 302
Query: 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531
++ARG+DV V+N D+ + Y HR GRTGR G GT +S C+ E + ++K
Sbjct: 303 IAARGIDVDALAYVINFDMSNMAETYVHRIGRTGRAGAEGTAISFCDAEEKAYLCDVEKL 362
Query: 532 LAVPI 536
+A I
Sbjct: 363 IAKKI 367
>gi|386813381|ref|ZP_10100605.1| DEAD/DEAH box helicase [planctomycete KSU-1]
gi|386402878|dbj|GAB63486.1| DEAD/DEAH box helicase [planctomycete KSU-1]
Length = 441
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 189/429 (44%), Gaps = 65/429 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F P + + G+ PT +Q AIP IL+ D++ + TG+GKT A++LPIL
Sbjct: 2 NFESFNFHPHIAAGVRALGYITPTPIQLQAIPFILQGQDIMALAQTGTGKTAAFVLPILQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ G + + A+I+AP+REL QI I L + ++V + GG
Sbjct: 62 RL------------MQGPRGCVRALIIAPTRELAEQIHEAIGGLGQQTRLRSVT-VYGGV 108
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
N Q + LR K I V PGR+ + G + LVLDE D + F + +
Sbjct: 109 NMRPQVQKLR-GKAEIAVSCPGRLLDHIRQGTIDLSRLEVLVLDEADRMFDMGFLPDIRK 167
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++H + A+RQT+ SAT+P + R A H P VQ + +P
Sbjct: 168 ILKH-----------------LPAQRQTLFFSATMPDDIRRLAHDILHTPATVQVNHTMP 210
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ ++ +L P +H K L ++
Sbjct: 211 VTTI--------------------------SHALYPVEQHL--------KTPLLMALLNH 236
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D ++V+ F + K +L G + L G+L + R L F+NG ++LV
Sbjct: 237 TDMESVLVFTRTKHRAKQVAHQLGRAGYSSTSLQGNLSQSQRQAALNGFRNGSFKILVAT 296
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARG+DV+ V+N D+P S Y HR GRTGR + G ++ + +V+ ++
Sbjct: 297 DIAARGIDVSRISHVINYDMPDTSDAYTHRIGRTGRAAKTGDAFTLITREDAQMVRAIEN 356
Query: 531 QLAVPIQAC 539
L ++ C
Sbjct: 357 VLGEELERC 365
>gi|225011737|ref|ZP_03702175.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
MS024-2A]
gi|225004240|gb|EEG42212.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
MS024-2A]
Length = 553
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 198/432 (45%), Gaps = 67/432 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPIL 169
+F LGL LL+ +E+ GF PTEVQ IP +L +N D+V + TG+GKT A+ P+L
Sbjct: 3 TFKSLGLNTELLKAVEKLGFETPTEVQDKVIPILLEQNTDLVALAQTGTGKTAAFGFPML 62
Query: 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA-VQQLVG 228
++ K+ + +I+AP+REL +QI E+ + G + K + + G
Sbjct: 63 QRI-------------DAKQRTTQGLILAPTRELCLQITNEMG-IYGQALKNINIVAIYG 108
Query: 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
GAN Q +R+ IVV TPGR+ ++ + ++ VLDE DE+L+ F E +
Sbjct: 109 GANIQEQANKIRRG-AQIVVATPGRLKDMIGRRLVDISAIQYCVLDEADEMLNMGFYEDI 167
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
I+ H PKS + + + SAT+P V A+ +
Sbjct: 168 KDILTHT----------PKS-------KNSWLFSATMPPEVNTIAKKF------------ 198
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408
+ P+ + N AK D H Y + + + + LR V
Sbjct: 199 -------------MKKPIEITVGTKNSSAKNID--------HQYFIVAARERYNALRAVV 237
Query: 409 HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV 468
+ F + + KL G KAA +HGDL + R ++ F+ +++L+
Sbjct: 238 SMNTDLFGVVFCRTKIETQKVAEKLIQDGYKAAAIHGDLSQNQRDIVMQSFRKKRIQLLI 297
Query: 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528
+++ARG+DV + V+N LP + Y HR+GRTGR G+ GT + + + +K +
Sbjct: 298 ATDVAARGIDVDDLTHVINYQLPDEIETYTHRSGRTGRAGKLGTSIIFVTKSDRRKIKLI 357
Query: 529 QKQLAVPIQACE 540
+ +L + E
Sbjct: 358 ENKLQTKLTELE 369
>gi|224135925|ref|XP_002322195.1| predicted protein [Populus trichocarpa]
gi|222869191|gb|EEF06322.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 191/421 (45%), Gaps = 58/421 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
++E P F E P L+ + + GF PT +Q+ P LK D++ + TGS
Sbjct: 57 TVEGHDVPRPIRIFHEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGS 116
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTLAYLLP V + + +G+G +++AP+REL +QI E K +
Sbjct: 117 GKTLAYLLPAFVHVAA-QPRLVHGDGPI-------VLVLAPTRELAVQIQEEALKFGSKA 168
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ ++ + GGA + Q L++ IV+ TPGR+ ++ A ++ +LVLDE D
Sbjct: 169 NIRST-CIYGGAPKGPQIRDLQRGV-EIVIATPGRLIDMLGAQHVNLRRVTYLVLDEADR 226
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +IV + R +RQT+ SAT P V AR + H
Sbjct: 227 MLDMGFEPQIRKIVSQI-----------------RPDRQTLYWSATWPREVEALARHFLH 269
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
+P V + GS Q +A+QS+ ++ + K +
Sbjct: 270 NPYKV----------------------IIGS------QDLKANQSIKQVVEVMMDLEKYK 301
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
+ L+ +D ++ FM + +L G A +HGD + R L +
Sbjct: 302 RLIKLLK---EVMDGSRILIFMETKKGCDQVTRQLRMDGWAALSIHGDKNQAERDWVLAE 358
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518
FK+G ++ +++ARGLDV + VVN D P+ Y HR GRTGR G RGT ++
Sbjct: 359 FKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGARGTALTFFT 418
Query: 519 E 519
E
Sbjct: 419 E 419
>gi|414591851|tpg|DAA42422.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 1353
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 123/420 (29%), Positives = 187/420 (44%), Gaps = 65/420 (15%)
Query: 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTL 162
E+ P +F G PP +L + GF+ PT +Q+ P L+N D+V + TGSGKTL
Sbjct: 593 ENVPAPFMTFEATGFPPEILREIHAAGFSNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL 652
Query: 163 AYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222
YL+P + + + N G +++AP+REL QI E+ K G S + +
Sbjct: 653 GYLIPAFIHL-----RRCHNNPMLGPTV----LVLAPTRELASQIQAEVVKF-GQSSRVS 702
Query: 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282
L GG ++ Q L + IVV TPGR+ +I +++ H LVLDE D +L
Sbjct: 703 CTCLYGGTSKVPQLRELERGA-DIVVATPGRLNDILEMKRINLHQVSLLVLDEADRMLDM 761
Query: 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342
F + +IV+ + RQT+M +AT P V + A DP+
Sbjct: 762 GFEPQIRKIVDE-----------------LPNARQTLMYTATWPKEVTKIAGDLLRDPVQ 804
Query: 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402
V N+ ++ + A N Q + +PP +D
Sbjct: 805 V---NIGSIDELVA-----------------NKSITQYVEVVPP--------------MD 830
Query: 403 TLRRCVHALDAQ---TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF 459
RR L Q + I +T+++ D + + R A +HGD + R L +F
Sbjct: 831 KQRRLEQILGDQERGSKIIIFCSTKKMCDQLARGIGRNFNAVSIHGDKSQAERDNVLNQF 890
Query: 460 KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519
+ G VLV +++ARGLD+ + +V+N D PT Y HR GRTGR G G + E
Sbjct: 891 RTGRASVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSE 950
>gi|405375448|ref|ZP_11029480.1| Cold-shock DEAD-box protein A [Chondromyces apiculatus DSM 436]
gi|397086329|gb|EJJ17452.1| Cold-shock DEAD-box protein A [Myxococcus sp. (contaminant ex DSM
436)]
Length = 571
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/420 (28%), Positives = 190/420 (45%), Gaps = 59/420 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGL P L+E L G+ PT +Q+AA+P +L D++ + TG+GKT A+ LP+L+
Sbjct: 13 TFESLGLKPALVEALSALGYEEPTPIQAAALPPLLGGKDLLGIAATGTGKTAAFALPLLN 72
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
V P + K A+++ P+REL MQ+ I + G +V L GG
Sbjct: 73 HVTP----------GACKPHTTSALVLVPTRELAMQVSEAIHR-YGQKLGVSVLPLYGGQ 121
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+Q L++ +VV TPGR + G L R +VLDE DE+L F + +
Sbjct: 122 VIGQQLRVLKRGV-DVVVATPGRALDHLRRGTLQLDDVRMVVLDEADEMLDMGFADDLEA 180
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ SG +RQT + SAT+P + A H+P+ V+
Sbjct: 181 IL------SGTP-----------EDRQTALFSATLPPRIASIAERHLHEPVRVK------ 217
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ ++ +Q P ++ V K+ TL R +
Sbjct: 218 ------------------------IAREKVEQGEMPRVRQTAYVVPRAFKIATLGRLLDV 253
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
I F ++ D L RG +A LHG + + R +K+ K+ +LV
Sbjct: 254 ESPTAAIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGTDLLVAT 313
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ VVN D+P Y HR GRTGR GR G +++ E E +++ +++
Sbjct: 314 DVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIER 373
>gi|225680138|gb|EEH18422.1| ATP-dependent RNA helicase dbp10 [Paracoccidioides brasiliensis
Pb03]
Length = 934
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/436 (28%), Positives = 201/436 (46%), Gaps = 47/436 (10%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F +GL LL+ + R+GF+VPT +Q IP +L + DVV + TGSGKT A+++P++ K
Sbjct: 84 FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231
LK S+ K A+I++PSREL +Q ++ +K+L +D K V LVGG +
Sbjct: 144 ---LKSHSA--------KFGARALIMSPSRELALQTLKVVKELGRGTDLKCVL-LVGGDS 191
Query: 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291
Q E + N P I++ TPGR + L R++V DE D L F + I
Sbjct: 192 LEEQFEYMSGN-PDIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFSAQLTEI 250
Query: 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351
+ + + RQT++ SAT+P S++ AR+ +P L++ L
Sbjct: 251 LH-----------------GLPSSRQTLLFSATLPKSLVEFARAGLQEPTLIR------L 287
Query: 352 ESMPATGPGNLSGPMSGSSSNSN----------LQAKQADQSLPPALKHYYCVTKLQHKV 401
++ P +G S SS ++ + K K + +
Sbjct: 288 DAESKISPDLQNGFFSIKSSEKEGALLHLLHDIIKIPTGETEAGKRTKEELHNPKKRKRS 347
Query: 402 DT-LRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
DT L+ + + I F + L G + +G L + AR ++ F+
Sbjct: 348 DTVLKSHKESPTEHSTIIFTATKHHVDYLTSVLRQSGFAVSYAYGSLDQTARKIEVQNFR 407
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520
+G +LV +++ARG+D+ V+N D P+ S + HR GRT R GR G S+ E
Sbjct: 408 SGITHILVVTDVAARGIDIPILSNVINYDFPSQSKIFVHRVGRTARAGRTGWSYSLIRES 467
Query: 521 EVFVVKKMQKQLAVPI 536
+ + +Q L P+
Sbjct: 468 DAPYLLDLQLFLGRPL 483
>gi|340725165|ref|XP_003400944.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
terrestris]
Length = 605
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 193/418 (46%), Gaps = 56/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
+++ ++ P F E PP +L+ + ++G++ PT +Q+ P L D+V + TGS
Sbjct: 102 TIKGDNIPNPIQYFEEGNFPPYVLDEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGS 161
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL Y+LP + + + + NG+G A+I+AP+REL QI +E+ G +
Sbjct: 162 GKTLGYVLPAIVHI-IHQPRLGNGDGPI-------ALILAPTRELAQQI-QEVANCFGEA 212
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ GGA + Q L + I + TPGR+ + G + C +LVLDE D
Sbjct: 213 AGVRNTCIFGGAPKGPQAHDLERG-VEICIATPGRLIDFLERGTTNLRRCTYLVLDEADR 271
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +I+E + R +RQ +M SAT P V R+
Sbjct: 272 MLDMGFEPQIRKIIEQI-----------------RPDRQVLMWSATWPKEV----RALAE 310
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
D L I G ++ S++++ +Q Q LK Y + ++
Sbjct: 311 DFLTDYTHLNI--------------GSLTLSANHNIIQIVDVCQEFEKDLKLYRLLQEIG 356
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
++ + I F+ R++ D + G +A +HGD + R L++
Sbjct: 357 NEKEN-----------KTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQE 405
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK+G +LV +++ARGLDV + V+N D P+ S Y HR GRTGR + GT +
Sbjct: 406 FKSGRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAF 463
>gi|346972098|gb|EGY15550.1| ATP-dependent RNA helicase DBP3 [Verticillium dahliae VdLs.17]
Length = 603
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 190/396 (47%), Gaps = 47/396 (11%)
Query: 121 LLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180
LL + + PT +Q+A+ P L D + + TGSGKT+A+ LP++ + +K +
Sbjct: 194 LLAKSPFAAYTKPTPIQAASWPFTLSGRDAIGVAETGSGKTMAFALPLVESISKMKKRC- 252
Query: 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR 240
I+AV+V+P+REL MQ + +L K+V + GGA++ Q AL
Sbjct: 253 -----------IKAVVVSPTRELAMQTHEQTAQLAAHLGLKSVC-VYGGASKDEQR-ALL 299
Query: 241 KNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300
+ I+V TPGR+ + + G + RF VLDE D +L F + + I+ G
Sbjct: 300 QRGADIIVATPGRLKDFMSDGTVDLSHSRFAVLDEADRMLDKGFEDDIKAIL-------G 352
Query: 301 ANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPG 360
A P R RQT+M +AT P SV A S+ DP+ + + A+G
Sbjct: 353 AMP--------AREARQTLMFTATWPASVRLLASSFMVDPVKI---TIGSGGKETASGAV 401
Query: 361 NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
L + + + +Q L L+ Y + ++ L C++ +A V AF
Sbjct: 402 ELQANTRITQRVEVVDGRDKEQRLLQILRQYQAGQGRRDRI--LVFCLYKKEATRVEAF- 458
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
L+ RG+ +HGDL + R+ +L+ FK+G V+V +++ARGLD+
Sbjct: 459 ------------LQQRGIHVCGIHGDLRQDQRTRSLEAFKSGATSVMVATDVAARGLDIP 506
Query: 481 ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
E LVVN+ P Y HR GRTGR G+ G +++
Sbjct: 507 EVKLVVNVTFPLTIEDYVHRIGRTGRAGKTGEAITL 542
>gi|417950107|ref|ZP_12593235.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342807185|gb|EGU42381.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 551
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 202/425 (47%), Gaps = 64/425 (15%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF LGL +L+ +E +G++ P+ +Q A+P++L DV+ + TG+GKT + LPIL
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ G ++ + A+++ P+REL Q+ + K G + + GG
Sbjct: 62 LLS---------KGPRVRQNQVRALVLTPTRELAAQVNGSVVKY-GINLPLTSSVVFGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q + LRK ++V TPGR+ ++ + LVLDE D +L F + +
Sbjct: 112 KINPQMQKLRKGS-DVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRK 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I+ + PK +RQ ++ SAT + A+ ++P+ +
Sbjct: 171 ILAFL----------PK-------KRQNLLFSATFSDDIRNLAKGLVNNPVEI------- 206
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
S S +N AK +QS+ P K + K L + +
Sbjct: 207 ------------------SVSPANSTAKTVEQSIYPVDK--------KRKSPMLAKLIKD 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D + V+ F L+ +G+ AA +HG+ + AR+ L+ FK G+VRVLV
Sbjct: 241 NDWRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVLVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS-IC--EEPEVFVVKK 527
+++ARG+D+ + VVN DLP S YAHR GRTGR G G +S +C E E+F +++
Sbjct: 301 DIAARGIDIPQLPQVVNFDLPHVSEDYAHRIGRTGRAGEVGKAISLVCADEAGELFGIER 360
Query: 528 MQKQL 532
+ +Q+
Sbjct: 361 LIQQV 365
>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
Length = 448
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 201/427 (47%), Gaps = 62/427 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
+F LGL P+LL+ L G PT +Q+ IP I++ D++ + TG+GKT A+ LP+L+
Sbjct: 3 TFENLGLAPMLLKNLAGLGLTKPTPIQAQGIPHIVRGRDILGLAQTGTGKTAAFGLPMLT 62
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
++ G+ + A+++AP+REL QI + + + +Q++VGGA
Sbjct: 63 RI--------LAYGKRPAPKTVRALVLAPTRELATQIHDNLAAYAEGAPVR-IQRVVGGA 113
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ + Q E L K +++ TPGR+ ++ L ++LVLDE D++L F A+ R
Sbjct: 114 SLNVQAEKLSKGC-DVLIATPGRLIDLIERRALVLSETKYLVLDEADQMLDIGFIHALRR 172
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I + + AERQT++ SAT+P + A S+ DP+ V+
Sbjct: 173 IAKLI-----------------PAERQTLLFSATMPKLMEELAASYLSDPIRVEVAT--- 212
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
PG A++ DQ + H+ T K L +
Sbjct: 213 --------PGK--------------AAEKIDQGV-----HF---TTQGEKAALLAEYISR 242
Query: 411 LDAQTVIAFMNNTRQLKDAVFKL-EARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + F N T+ D + KL E G +HG+ + R L F+ EV+VLV
Sbjct: 243 HPGELAVVF-NRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQVLVA 301
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529
+++ARGLD+ + V N DLP +Y HR GRT R GR G V+ C E+ ++ ++
Sbjct: 302 TDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEMSDLRAIE 361
Query: 530 KQLAVPI 536
+ I
Sbjct: 362 AAMGAKI 368
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 196/417 (47%), Gaps = 62/417 (14%)
Query: 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171
F + GL P +L+ L +G+ PT +Q+ AIP +L+ DV+ + TG+GKT + LPI+ +
Sbjct: 18 FEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGG 229
+ S+ S + + A+I+ P+REL Q+ +K P V GG
Sbjct: 78 LLAHASHSA-----SPARHPVRALILTPTRELADQVAENVKAYSRFTPLRSTVV---FGG 129
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH 289
+ + Q LR IV+ TPGR+ + ++ + LV+DE D +L F +
Sbjct: 130 VDMAPQTATLRAGV-EIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQ 188
Query: 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RI+ + PK +RQ ++ SAT + + A S+ ++P+ ++
Sbjct: 189 RIINLL----------PK-------QRQNLLFSATFSPEIKKLAASFQNNPVTIEV---- 227
Query: 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409
+ SN A+ Q++ Y V + K D + +
Sbjct: 228 ---------------------ARSNATAENVSQTI-------YKVEEAA-KADAVSFIIR 258
Query: 410 ALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469
+ + VI F N L A G+KA+ +HGD + R L+ FK G++ VLV
Sbjct: 259 QRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALESFKQGQIEVLVA 318
Query: 470 NELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI-CEEPEVFVV 525
+++ARGLD+AE V+N DLP ++ Y HR GRTGR G G +S+ C++ E +V
Sbjct: 319 TDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDERLLV 375
>gi|168021119|ref|XP_001763089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685572|gb|EDQ71966.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 514
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 196/439 (44%), Gaps = 66/439 (15%)
Query: 83 VKAVRSDGIKAAGVKKSLEIE--SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAA 140
V A+ + + A K+ + +E + P +F E P +L + + GF PT +Q+
Sbjct: 65 VSALTEEEVAAYRRKREITVEGRTVPKPVRTFEEASFPDYVLHEVLKAGFTEPTAIQAQG 124
Query: 141 IPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPS 200
P LK D++ + TGSGKTLAYLLP + V + + G+G +++AP+
Sbjct: 125 WPMALKGRDLIGLAETGSGKTLAYLLPAIVHVNA-QPYLAPGDGPI-------VLVLAPT 176
Query: 201 RELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA 260
REL +QI +E K G S K + GGA + Q L+K +V+ TPGR+ ++
Sbjct: 177 RELAVQIQQESTKF-GASSKIKNTCIYGGAPKGPQIRDLQKGV-EVVIATPGRLIDMLEG 234
Query: 261 GKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIM 320
+ +LVLDE D +L F + +IV + R +RQT+
Sbjct: 235 RHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI-----------------RPDRQTLY 277
Query: 321 VSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQA 380
SAT P V AR + +DP V + +S+L+A A
Sbjct: 278 WSATWPKEVEFLARQFLNDPYKV-------------------------TIGSSDLKANHA 312
Query: 381 -DQSLPPALKH--YYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437
DQ + +H Y + KL ++ +D ++ FM R +L G
Sbjct: 313 IDQVVEVVSEHEKYPKLIKLLEEI---------MDGSRLLVFMETKRGCDQVTRQLRMDG 363
Query: 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
A +HGD + R L +FK G+ ++ +++ARGLDV + V+N D P Y
Sbjct: 364 WPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSCEDY 423
Query: 498 AHRAGRTGRLGRRGTVVSI 516
HR GRTGR G +G +
Sbjct: 424 VHRIGRTGRAGAKGAAYTF 442
>gi|410627645|ref|ZP_11338382.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
gi|410152719|dbj|GAC25151.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
Length = 435
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 122/436 (27%), Positives = 203/436 (46%), Gaps = 65/436 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGL P +L + +G+ P+ +Q+ AIP+IL+ D++ + TG+GKT + LP+L
Sbjct: 2 SFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLLE 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
L ++ ++ G + A+++ P+REL Q+ + G + GG
Sbjct: 62 ----LLNRGTHARGNQAR-----ALVLTPTRELAAQVAASVVD-YGKDLPLRSAVVFGGV 111
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
+ Q LRK I+V TPGR+ ++ + LVLDE D +L F + +
Sbjct: 112 GINPQMIKLRKGVD-ILVATPGRLLDLYNQNAVRFDDLEILVLDEADRMLDMGFIHDIKK 170
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
+++ + +RQ ++ SAT FS
Sbjct: 171 VLK-----------------LLPTKRQNLLFSAT--FS---------------------- 189
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
+ + A G ++ P+ S S N + A++ + C K L R +
Sbjct: 190 -DDIRALAKGLVNNPVEVSVSPPNTTVE--------AVEQFVCPVDKNQKTPALIRMIKD 240
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
D Q V+ F +LEARG+ +A +HG+ + AR+ L +FK+G+VR LV
Sbjct: 241 NDWQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVAT 300
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC---EEPEVFVVKK 527
+++ARGLD+++ VVN DLP + Y HR GRTGR G G +S+ E P + +++
Sbjct: 301 DIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFPLLADIER 360
Query: 528 MQKQLAVPIQACEFTE 543
KQ+ +P + E E
Sbjct: 361 FTKQI-IPRKGIEGFE 375
>gi|345872285|ref|ZP_08824222.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343919163|gb|EGV29916.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 446
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 193/427 (45%), Gaps = 60/427 (14%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF ELGL LL ++ +G+ PT +Q AIP++L DV+ + TG+GKT A+ LP+L
Sbjct: 2 SFAELGLSAELLRAVDAQGYTHPTPIQLQAIPAVLLGRDVLAGAQTGTGKTAAFTLPMLQ 61
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230
+ N +G++ A+++ P+REL Q+ ++ L G + Q+ GG
Sbjct: 62 LL--------NAAQSNGRQRRPRALVLTPTRELAAQVGESVR-LYGQNLPLRSLQIFGGV 112
Query: 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290
Q + LR+ I+V TPGR+ + G + G LVLDE D +L F + R
Sbjct: 113 GMGPQVDKLRRGVD-ILVATPGRLLDHQGQGNVDLGGIEILVLDEADRMLDMGFIHDIRR 171
Query: 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350
I++ + PK +RQ ++ SAT + + A
Sbjct: 172 ILKSL----------PK-------QRQNLLFSATYSREIEQLA----------------- 197
Query: 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410
G LS P + N A+ Q + P +K K L +H+
Sbjct: 198 --------TGLLSNPARIEVARRNTAAETVSQLVHPVVK--------DQKRALLSHLIHS 241
Query: 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470
Q V+ F +L G+ AA +HG+ + AR+ L FK+G VR LV
Sbjct: 242 GGLQQVLVFTRTKHGANRLAQQLITDGITAAAIHGNKSQGARTRALADFKSGAVRTLVAT 301
Query: 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQK 530
+++ARGLD+ VVN +LP S Y HR GRTGR G G VS+ E ++ +++
Sbjct: 302 DIAARGLDIDRLPNVVNYELPNVSEDYVHRIGRTGRAGSEGAAVSLVGPDEYGLLAGIER 361
Query: 531 QLAVPIQ 537
L I+
Sbjct: 362 LLGRKIE 368
>gi|350412504|ref|XP_003489670.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Bombus
impatiens]
Length = 605
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 193/418 (46%), Gaps = 56/418 (13%)
Query: 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGS 158
+++ ++ P F E PP +L+ + ++G++ PT +Q+ P L D+V + TGS
Sbjct: 102 TIKGDNIPNPIQYFEEGNFPPYVLDEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGS 161
Query: 159 GKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218
GKTL Y+LP + + + + NG+G A+I+AP+REL QI +E+ G +
Sbjct: 162 GKTLGYVLPAIVHI-IHQPRLGNGDGPI-------ALILAPTRELAQQI-QEVANCFGEA 212
Query: 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278
+ GGA + Q L + I + TPGR+ + G + C +LVLDE D
Sbjct: 213 AGVRNTCIFGGAPKGPQAHDLERG-VEICIATPGRLIDFLERGTTNLRRCTYLVLDEADR 271
Query: 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338
+L F + +I+E + R +RQ +M SAT P V R+
Sbjct: 272 MLDMGFEPQIRKIIEQI-----------------RPDRQVLMWSATWPKEV----RALAE 310
Query: 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ 398
D L I G ++ S++++ +Q Q LK Y + ++
Sbjct: 311 DFLTDYTHLNI--------------GSLTLSANHNIIQIVDVCQEFEKDLKLYRLLQEIG 356
Query: 399 HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458
++ + I F+ R++ D + G +A +HGD + R L++
Sbjct: 357 NEKEN-----------KTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQE 405
Query: 459 FKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516
FK+G +LV +++ARGLDV + V+N D P+ S Y HR GRTGR + GT +
Sbjct: 406 FKSGRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAF 463
>gi|441502769|ref|ZP_20984776.1| ATP-dependent 23S rRNA helicase DbpA [Photobacterium sp. AK15]
gi|441428985|gb|ELR66440.1| ATP-dependent 23S rRNA helicase DbpA [Photobacterium sp. AK15]
Length = 462
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 125/435 (28%), Positives = 198/435 (45%), Gaps = 64/435 (14%)
Query: 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166
+ F L L P LL+ L G+N T +Q+ ++P IL DV+ Q TGSGKT A+ L
Sbjct: 1 MSQTDFSTLDLKPELLKNLSSLGYNSMTPIQAQSLPHILAGKDVIAQGKTGSGKTAAFGL 60
Query: 167 PILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226
+L + K+ I+++++ P+REL Q+ +EI+KL V L
Sbjct: 61 GVLDLLNV-------------KRFRIQSLVLCPTRELADQVAKEIRKLARTIHNIKVLTL 107
Query: 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286
GG Q +L ++ I+VGTPGR+ E G L+ LVLDE D +L F++
Sbjct: 108 CGGMPFGPQIGSL-EHGAHIIVGTPGRVEEHVRKGFLNLDNLNLLVLDEADRMLEMGFQD 166
Query: 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
A+ I++ +R RQT++ SAT P + A P++ + +
Sbjct: 167 ALDAIIDAAPKR-----------------RQTLLFSATYPAQIKSIAERIMFKPVMTKVE 209
Query: 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406
+ + NS++Q +H+Y V ++ LR
Sbjct: 210 S---------------------THDNSSIQ------------QHFYKVDSNDERLTALRL 236
Query: 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466
+ ++ + F N R+ ++ +LE G A LHGDL + R TL +F N V
Sbjct: 237 LLSHHRPESTVVFCNTKRETQEVADELEHYGFSAIALHGDLEQRDRDQTLVRFANKSASV 296
Query: 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVK 526
LV +++ARGLD+ D VVN + D+ + HR GRTGR G +G S + E + +
Sbjct: 297 LVATDVAARGLDIESLDAVVNYHMARDTEVHVHRIGRTGRAGSKGVACSFFSDKEHYKIA 356
Query: 527 KMQKQLAVPIQACEF 541
++ L I+ E
Sbjct: 357 LLEDYLDKTIEGEEL 371
>gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense]
Length = 440
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 198/415 (47%), Gaps = 68/415 (16%)
Query: 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILS 170
SF +LGLP L+E + G+ P ++Q AIP L+ DV+ + TGSGKT A+ LPIL
Sbjct: 10 SFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPILH 69
Query: 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL-LGPSDKKAVQQLVGG 229
+ ++ + A +++P+REL +QI + + L G K AV LVGG
Sbjct: 70 ALL-----------QAPRPNHFFACVLSPTRELAIQISEQFEALGSGIGVKSAV--LVGG 116
Query: 230 ANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288
+ +Q + K+ P I+VGTPGR+ + + ++LVLDE D LL+ +F E++
Sbjct: 117 IDMVQQSIKIAKH-PHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESL 175
Query: 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
+ I+ G PRE R+T + SAT+ V + R +P+ ++A
Sbjct: 176 NEIL-------GMIPRE----------RRTFLFSATMTKKVEKLQRVCLRNPVKIEA--- 215
Query: 349 IPLESMPATGPGNLSGPMSGSSSNSNLQA-KQADQSLPPALKHYYCVTKLQHKVDTLRRC 407
S+ S + KQ + LP K Y V L
Sbjct: 216 --------------------STKYSTVDTLKQQYRFLPAKRKDCYLVYILTE-------- 247
Query: 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467
+ T + F + L G+KA ++G + + R L KFK+G+ +L
Sbjct: 248 ---MAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNIL 304
Query: 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522
+ ++++RGLD+ D+V+N D+PT+S Y HR GRT R GR G +S+ + E+
Sbjct: 305 LCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEL 359
>gi|293414669|ref|ZP_06657318.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
gi|291434727|gb|EFF07700.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
Length = 457
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 178/405 (43%), Gaps = 65/405 (16%)
Query: 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176
LPP L L G+ T VQ+AA+P+IL DV +Q+ TGSGKT A+ L +L ++
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI---- 65
Query: 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE 236
+A+++ P+REL Q+ E+++L + L GG Q
Sbjct: 66 ---------DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQR 116
Query: 237 EALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVG 296
++L ++ P I+V TPGR+ + G + LV+DE D +L F +A+ ++
Sbjct: 117 DSL-QHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA- 174
Query: 297 RRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356
A RQT++ SAT P ++ + DPL ++ +
Sbjct: 175 ----------------PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST-------- 210
Query: 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416
+LPP + +Y T + K+ L+R + +
Sbjct: 211 -------------------------DALPPIDQQFY-ETSSKGKIPLLQRLLSLHQPSSC 244
Query: 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476
+ F N + + L G A LHGDL + R TL +F NG VLV +++ARG
Sbjct: 245 VVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSACVLVATDVAARG 304
Query: 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521
LD+ +LVVN +L D + HR GRT R G G +S C E
Sbjct: 305 LDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEE 349
>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
Length = 768
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 195/434 (44%), Gaps = 65/434 (14%)
Query: 94 AGVKKSLEIESAPFAA----NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHD 149
A KSL I + F +F + G P L+ + ++ + PT +Q A+P +L D
Sbjct: 199 ADYMKSLAIRVSGFDVPRPIKNFEDCGFPVPLMNAIAKQAYQKPTTIQCQALPIVLSGRD 258
Query: 150 VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR 209
++ + TGSGKT A++LP++ + E K+ VI AP+REL QI
Sbjct: 259 IIGIAKTGSGKTAAFVLPMIVHI--------MDQPELEKEEGPIGVICAPTRELAHQIYL 310
Query: 210 EIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269
E KK P + + V + GG ++ Q + L K +V+ TPGR+ ++ L
Sbjct: 311 EAKKFAKPYNLR-VAAVYGGVSKFDQFKEL-KAGCEVVIATPGRLIDLLKMKALKMFRAT 368
Query: 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSV 329
+LVLDE D + F + IV + R RQT++ SAT+P+ V
Sbjct: 369 YLVLDEADRMFDLGFEPQIRSIVGQI-----------------RPGRQTLLFSATMPYKV 411
Query: 330 IRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLP-PAL 388
R AR DP+ V G +N KQ +P A
Sbjct: 412 ERLAREILTDPIRVTV----------------------GQVGGANEDIKQVVNVIPSDAE 449
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLG 448
K + + KL +D V+ F + ++ + +L RG + A LHGD
Sbjct: 450 KMPWLLEKLPGMIDD----------GDVLVFASKKARVDEIERELNQRGFRIAALHGDKD 499
Query: 449 KLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG 508
+ +R TL+KFK+G VLV +++ARGLD+ VVN D+ + + HR GRTGR G
Sbjct: 500 QASRMETLQKFKSGTYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAG 559
Query: 509 -RRGTVVSICEEPE 521
+ GT ++ + E
Sbjct: 560 DKDGTAYTLITQKE 573
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,274,468,121
Number of Sequences: 23463169
Number of extensions: 337540769
Number of successful extensions: 1127333
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 32849
Number of HSP's successfully gapped in prelim test: 3572
Number of HSP's that attempted gapping in prelim test: 995780
Number of HSP's gapped (non-prelim): 71157
length of query: 560
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 412
effective length of database: 8,886,646,355
effective search space: 3661298298260
effective search space used: 3661298298260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)