BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008602
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/411 (25%), Positives = 187/411 (45%), Gaps = 67/411 (16%)
Query: 89 DGIKAAGVKKSLEIESAPFAANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAAIPSILKNH 148
DG++ GV +S E +SF F P+ +Q AI +K +
Sbjct: 23 DGMEPEGVIESNWNE----IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY 78
Query: 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208
DV+ Q+ +G+GKT + + IL ++ L K++ +A+++AP+REL QI
Sbjct: 79 DVIAQAQSGTGKTATFAISILQQI-ELDLKAT------------QALVLAPTRELAQQI- 124
Query: 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268
+++ LG + +GG N + + L+ P I+VGTPGR+ ++ L
Sbjct: 125 QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184
Query: 269 RFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS 328
+ VLDE DE+LS F++ ++ I + + + Q +++SAT+P
Sbjct: 185 KMFVLDEADEMLSRGFKDQIYDIFQKLNSNT-----------------QVVLLSATMPSD 227
Query: 329 VIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXXXXXXXXQAKQADQSLPPAL 388
V+ + + DP+ + K+ + +L
Sbjct: 228 VLEVTKKFMRDPIRI--------------------------------LVKKEELTLEGIR 255
Query: 389 KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLG 448
+ Y V + + K+DTL L + F+N R++ K+ AR + +HGD+
Sbjct: 256 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMD 315
Query: 449 KLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499
+ R +++F++G RVL+T +L ARG+DV + LV+N DLPT+ +Y H
Sbjct: 316 QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 366
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 175/370 (47%), Gaps = 63/370 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ L K++
Sbjct: 34 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI-ELDLKAT--------- 83
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI +++ LG + +GG N + + L+ P I+VG
Sbjct: 84 ---QALVLAPTRELAQQI-QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 139
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ ++ L + VLDE DE+LS F++ ++ I + + +
Sbjct: 140 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT---------- 189
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXX 369
Q +++SAT+P V+ + + DP+ +
Sbjct: 190 -------QVVLLSATMPSDVLEVTKKFMRDPIRI-------------------------- 216
Query: 370 XXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429
K+ + +L + Y V + + K+DTL L + F+N R++
Sbjct: 217 ------LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWL 270
Query: 430 VFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLD 489
K+ AR + +HGD+ + R +++F++G RVL+T +L ARG+DV + LV+N D
Sbjct: 271 TEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 330
Query: 490 LPTDSIHYAH 499
LPT+ +Y H
Sbjct: 331 LPTNRENYIH 340
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 182/412 (44%), Gaps = 74/412 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 21 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDI-------------QV 67
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ--LVGGANRSRQEEALRKNKPA-- 245
+ +A+I+AP+REL +Q+ K LL D VQ +GG N E +RK
Sbjct: 68 RETQALILAPTRELAVQVQ---KGLLALGDYMNVQSHACIGGTNVG---EDIRKLDYGQH 121
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
+V GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 122 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---------- 171
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXX 365
P + Q +++SAT+P V+ + DP+ + K
Sbjct: 172 PPAT-------QVVLISATLPHEVLEMTNKFMTDPIRILVKR------------------ 206
Query: 366 XXXXXXXXXXQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
D+ +K ++ V + + K DTL L + F N R
Sbjct: 207 ---------------DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 251
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
++ K+ + +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L
Sbjct: 252 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 311
Query: 485 VVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
++N DLP + Y HR V+ + ++ V++ +++ + I
Sbjct: 312 IINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQI 363
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 182/412 (44%), Gaps = 74/412 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 104
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPA-- 245
+ +A+I+AP+REL +QI K LL D VQ +GG N E +RK
Sbjct: 105 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVG---EDIRKLDYGQH 158
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
+V GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---------- 208
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXX 365
P + Q +++SAT+P ++ + DP+ + K
Sbjct: 209 PPAT-------QVVLISATLPHEILEMTNKFMTDPIRILVKR------------------ 243
Query: 366 XXXXXXXXXXQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
D+ +K ++ V + + K DTL L + F N R
Sbjct: 244 ---------------DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 288
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
++ K+ + +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 485 VVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
++N DLP + Y HR ++ + ++ +++ +++ + I
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 400
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 182/412 (44%), Gaps = 74/412 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 104
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPA-- 245
+ +A+I+AP+REL +QI K LL D VQ +GG N E +RK
Sbjct: 105 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVG---EDIRKLDYGQH 158
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
+V GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---------- 208
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXX 365
P + Q +++SAT+P ++ + DP+ + K
Sbjct: 209 PPAT-------QVVLISATLPHEILEMTNKFMTDPIRILVKR------------------ 243
Query: 366 XXXXXXXXXXQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
D+ +K ++ V + + K DTL L + F N R
Sbjct: 244 ---------------DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 288
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
++ K+ + +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 485 VVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
++N DLP + Y HR ++ + ++ +++ +++ + I
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 400
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 182/412 (44%), Gaps = 74/412 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 57 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 103
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPA-- 245
+ +A+I+AP+REL +QI K LL D VQ +GG N E +RK
Sbjct: 104 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVG---EDIRKLDYGQH 157
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
+V GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 158 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---------- 207
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXX 365
P + Q +++SAT+P ++ + DP+ + K
Sbjct: 208 PPAT-------QVVLISATLPHEILEMTNKFMTDPIRILVKR------------------ 242
Query: 366 XXXXXXXXXXQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
D+ +K ++ V + + K DTL L + F N R
Sbjct: 243 ---------------DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 287
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
++ K+ + +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L
Sbjct: 288 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347
Query: 485 VVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
++N DLP + Y HR ++ + ++ +++ +++ + I
Sbjct: 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 399
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 182/412 (44%), Gaps = 74/412 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 36 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QV 82
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPA-- 245
+ +A+I+AP+REL +QI K LL D VQ +GG N E +RK
Sbjct: 83 RETQALILAPTRELAVQIQ---KGLLALGDYMNVQCHACIGGTNVG---EDIRKLDYGQH 136
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
+V GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 137 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---------- 186
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXX 365
P + Q +++SAT+P ++ + DP+ + K
Sbjct: 187 PPAT-------QVVLISATLPHEILEMTNKFMTDPIRILVKR------------------ 221
Query: 366 XXXXXXXXXXQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
D+ +K ++ V + + K DTL L + F N R
Sbjct: 222 ---------------DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 266
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
++ K+ + +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L
Sbjct: 267 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 326
Query: 485 VVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
++N DLP + Y HR ++ + ++ +++ +++ + I
Sbjct: 327 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 378
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 182/412 (44%), Gaps = 74/412 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I+K DV+ QS +G+GKT + + +L + +
Sbjct: 21 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDI-------------QV 67
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPA-- 245
+ +A+I+AP+REL +Q+ K LL D VQ +GG N E +RK
Sbjct: 68 RETQALILAPTRELAVQVQ---KGLLALGDYMNVQCHACIGGTNVG---EDIRKLDYGQH 121
Query: 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305
+V GTPGR+ ++ L T + LVLDE DE+L+ F+E ++ + ++
Sbjct: 122 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL---------- 171
Query: 306 PKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXX 365
P + Q +++SAT+P ++ + DP+ + K
Sbjct: 172 PPAT-------QVVLISATLPHEILEMTNKFMTDPIRILVKR------------------ 206
Query: 366 XXXXXXXXXXQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
D+ +K ++ V + + K DTL L + F N R
Sbjct: 207 ---------------DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 251
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
++ K+ + +HGD+ + R + +K+F++G RVL++ ++ ARGLDV + L
Sbjct: 252 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 311
Query: 485 VVNLDLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
++N DLP + Y HR V+ + ++ V++ +++ + I
Sbjct: 312 IINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQI 363
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 185/409 (45%), Gaps = 67/409 (16%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I++ HDV+ Q+ +G+GKT + + L ++ D S
Sbjct: 42 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI----DTSVKAP------ 91
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL +QI + + L D K V +GG + E LR + IVVG
Sbjct: 92 ---QALMLAPTRELALQIQKVVMALAFHMDIK-VHACIGGTSFVEDAEGLRDAQ--IVVG 145
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ + + T + +LDE DE+LS F+E +++I + P +
Sbjct: 146 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL----------PPTT 195
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXX 369
Q +++SAT+P V+ + +P+ + K
Sbjct: 196 -------QVVLLSATMPNDVLEVTTKFMRNPVRILVKK---------------------- 226
Query: 370 XXXXXXQAKQADQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428
D+ +K +Y V + ++K + L ++ + F N R++++
Sbjct: 227 -----------DELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEE 275
Query: 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488
KL + ++ DL + R T +K+F++G R+L++ +L ARG+DV + LV+N
Sbjct: 276 LTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY 335
Query: 489 DLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
DLP + +Y HR ++ +V +++++K + I+
Sbjct: 336 DLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 384
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 162/371 (43%), Gaps = 59/371 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ +PT +Q +IP I D++ + TGSGKT A+LLPILSK+ L+D E G+
Sbjct: 76 YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKL--LEDPHEL---ELGRP 130
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ VIV+P+REL +QI E +K S K + + GG + Q E + + +V+
Sbjct: 131 ---QVVIVSPTRELAIQIFNEARKFAFESYLK-IGIVYGGTSFRHQNECITRGC-HVVIA 185
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ + + RF+VLDE D +L F E M RI+ HV
Sbjct: 186 TPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV-------------- 231
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXX 369
MR E QT+M SAT P + R A + + + V V
Sbjct: 232 -TMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV--------------------- 269
Query: 370 XXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429
Q++ Y V K + + + + A I F+ R
Sbjct: 270 ----GGACSDVKQTI-------YEVNKYAKRSKLIE--ILSEQADGTIVFVETKRGADFL 316
Query: 430 VFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLD 489
L + +HGD + R L+ FKNG ++VL+ +++RGLD+ V+N D
Sbjct: 317 ASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYD 376
Query: 490 LPTDSIHYAHR 500
+P+ Y HR
Sbjct: 377 MPSKIDDYVHR 387
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 168/372 (45%), Gaps = 73/372 (19%)
Query: 130 FNVPTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188
F PT++Q IP L + +++V Q+ TGSGKT ++ +P++ V +NG
Sbjct: 26 FEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN-----ENNG------ 74
Query: 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
IEA+I+ P+REL +Q+ EI+ L G + K + ++ GG Q +AL+ IVV
Sbjct: 75 ---IEAIILTPTRELAIQVADEIESLKGNKNLK-IAKIYGGKAIYPQIKALKN--ANIVV 128
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
GTPGRI + G L+ ++ +LDE DE L+ F + + +I+
Sbjct: 129 GTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILN--------------- 173
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXX 368
A +++ ++ SAT P ++ A+ + D ++AK
Sbjct: 174 --ACNKDKRILLFSATXPREILNLAKKYXGDYSFIKAK---------------------- 209
Query: 369 XXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428
+ ++ Y + + L R + + ++ F R K+
Sbjct: 210 ---------------INANIEQSYVEVNENERFEALCRLLKNKEFYGLV-FCKTKRDTKE 253
Query: 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488
L G KA +HGDL + R ++ FK ++R+L+ ++ +RG+DV + + V+N
Sbjct: 254 LASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINY 313
Query: 489 DLPTDSIHYAHR 500
LP + Y HR
Sbjct: 314 HLPQNPESYXHR 325
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 180/409 (44%), Gaps = 67/409 (16%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I++ HDV+ Q+ +G+GKT + + L ++ D S
Sbjct: 41 FEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQRI----DTSVKAP------ 90
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+ +AP+REL +QI + + L D K V +GG + E LR + IVVG
Sbjct: 91 ---QALXLAPTRELALQIQKVVXALAFHXDIK-VHACIGGTSFVEDAEGLRDAQ--IVVG 144
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ + + T + +LDE DE LS F+E +++I + P +
Sbjct: 145 TPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLL----------PPTT 194
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXX 369
Q +++SAT P V+ + +P+ + K
Sbjct: 195 -------QVVLLSATXPNDVLEVTTKFXRNPVRILVKK---------------------- 225
Query: 370 XXXXXXQAKQADQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428
D+ +K +Y V + ++K + L ++ + F N R++++
Sbjct: 226 -----------DELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEE 274
Query: 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488
KL + ++ DL + R T K+F++G R+L++ +L ARG+DV + LV+N
Sbjct: 275 LTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINY 334
Query: 489 DLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
DLP + +Y HR ++ +V ++++K + I+
Sbjct: 335 DLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAXRELEKFYSTQIE 383
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 172/379 (45%), Gaps = 58/379 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV---GPLKD-KSSNGNGE 185
+ PT VQ AIP I + D++ + TGSGKT A+LLPILS++ GP + ++ NG
Sbjct: 35 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94
Query: 186 SGKKTDIE-AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV--GGANRSRQEEALRKN 242
G++ ++++AP+REL +QI E +K S + V+ V GGA+ +Q L +
Sbjct: 95 YGRRKQYPISLVLAPTRELAVQIYEEARKF---SYRSRVRPCVVYGGADIGQQIRDLERG 151
Query: 243 KPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGAN 302
++V TPGR+ ++ GK+ C++LVLDE D +L F + RIVE
Sbjct: 152 -CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE--------- 201
Query: 303 PREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXX 362
+ + + R T+M SAT P + AR + + + + V
Sbjct: 202 ----QDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV-------------- 243
Query: 363 XXXXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNN 422
S + + K L ++A ++
Sbjct: 244 -------------------GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVE 284
Query: 423 TRQLKDAVFK-LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAE 481
T++ D++ L G +HGD + R L +F++G+ +LV ++ARGLD++
Sbjct: 285 TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344
Query: 482 CDLVVNLDLPTDSIHYAHR 500
V+N DLP+D Y HR
Sbjct: 345 VKHVINFDLPSDIEEYVHR 363
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 181/427 (42%), Gaps = 68/427 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AIP + D++ ++ G+GKT A+++P L KV P K
Sbjct: 41 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-------------KL 87
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVV 248
I+A+I+ P+REL +Q ++ + LG + GG N +++ LR N+ I+V
Sbjct: 88 NKIQALIMVPTRELALQ-TSQVVRTLGKHCGISCMVTTGGTN--LRDDILRLNETVHILV 144
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
GTPGR+ ++++ C ++DE D++LS +F+ + +I+ + P +
Sbjct: 145 GTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL----------PPT 194
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXX 368
Q+++ SAT P +V H P + + L+
Sbjct: 195 -------HQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLK---------------- 231
Query: 369 XXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428
+ YY + + K+ L L I F N+T +++
Sbjct: 232 ------------------GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVEL 273
Query: 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488
K+ G H + + R+ +F+ G+VR LV ++L RG+D+ ++V+N
Sbjct: 274 LAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINF 333
Query: 489 DLPTDSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVI 548
D P + Y HR +++ + F + K++++L I A T + +
Sbjct: 334 DFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLY 393
Query: 549 GKEEEKT 555
E ++T
Sbjct: 394 VAENDET 400
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 160/374 (42%), Gaps = 65/374 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+EVQ IP + DV+ Q+ +G GKT ++L L ++ P+ + S
Sbjct: 28 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS--------- 78
Query: 190 TDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++ +REL QI +E ++ P+ K AV GG + + EE L+KN P IV
Sbjct: 79 ----VLVMCHTRELAFQISKEYERFSKYMPNVKVAV--FFGGLSIKKDEEVLKKNCPHIV 132
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
VGTPGRI ++ L+ + +LDE D++L + M R V+ + R + P
Sbjct: 133 VGTPGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMT---PH--- 183
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXX 367
E+Q +M SAT+ + R + DP+ + + L
Sbjct: 184 -------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTL-------------- 222
Query: 368 XXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
L+ YY K K L + L+ V+ F+ + ++
Sbjct: 223 ------------------HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCI 264
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
L + A +H + + R + ++FK+ + R+LV L RG+D+ ++ N
Sbjct: 265 ALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN 324
Query: 488 LDLPTDSIHYAHRA 501
D+P DS Y HR
Sbjct: 325 YDMPEDSDTYLHRV 338
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 159/374 (42%), Gaps = 65/374 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+EVQ IP + DV+ Q+ +G GKT ++L L ++ P+ + S
Sbjct: 28 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS--------- 78
Query: 190 TDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++ +REL QI +E ++ P+ K AV GG + + EE L+KN P IV
Sbjct: 79 ----VLVMCHTRELAFQISKEYERFSKYMPNVKVAV--FFGGLSIKKDEEVLKKNCPHIV 132
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
VGTPGRI ++ L+ + +LDE D++L + M R V+ + R +
Sbjct: 133 VGTPGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMTP------- 182
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXX 367
E+Q +M SAT+ + R + DP+ + + L
Sbjct: 183 ------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTL-------------- 222
Query: 368 XXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
L+ YY K K L + L+ V+ F+ + ++
Sbjct: 223 ------------------HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCI 264
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
L + A +H + + R + ++FK+ + R+LV L RG+D+ ++ N
Sbjct: 265 ALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN 324
Query: 488 LDLPTDSIHYAHRA 501
D+P DS Y HR
Sbjct: 325 YDMPEDSDTYLHRV 338
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 160/374 (42%), Gaps = 65/374 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+EVQ IP + DV+ Q+ +G GKT ++L L ++ P+ + S
Sbjct: 27 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS--------- 77
Query: 190 TDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++ +REL QI +E ++ P+ K AV GG + + EE L+KN P IV
Sbjct: 78 ----VLVMCHTRELAFQISKEYERFSKYMPNVKVAV--FFGGLSIKKDEEVLKKNCPHIV 131
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
VGTPGRI ++ L+ + +LDE D++L + M R V+ + R + P
Sbjct: 132 VGTPGRILALARNKSLNLKHIKHFILDEADKMLE---QLDMRRDVQEIFRMT---PH--- 182
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXX 367
E+Q +M SAT+ + R + DP+ + + L
Sbjct: 183 -------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTL-------------- 221
Query: 368 XXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427
L+ YY K K L + L+ V+ F+ + ++
Sbjct: 222 ------------------HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCI 263
Query: 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487
L + A +H + + R + ++FK+ + R+LV L RG+D+ ++ N
Sbjct: 264 ALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN 323
Query: 488 LDLPTDSIHYAHRA 501
D+P DS Y HR
Sbjct: 324 YDMPEDSDTYLHRV 337
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 174/380 (45%), Gaps = 59/380 (15%)
Query: 134 TEVQSAAIPSIL--KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD 191
T VQ I IL ++HDV+ ++ TG+GKT A+L+PI + N + +
Sbjct: 45 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL---------INTKFDSQYM 95
Query: 192 IEAVIVAPSRELGMQIVREIKKLLGPS---DKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
++AVIVAP+R+L +QI E+KK+ + K A LVGG + + K +P IV+
Sbjct: 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVI 155
Query: 249 GTPGRIAEISAAGKLHTHGCRFL---VLDEIDELLSFNFREAMHRIVEHVGRRSGA-NPR 304
TPGR+ I K RF+ VLDE D LL FR+ + I SG N +
Sbjct: 156 ATPGRL--IDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETI-------SGILNEK 206
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXX 364
KSA ++ T++ SAT+ V + A + ++ K + L+++
Sbjct: 207 NSKSADNIK----TLLFSATLDDKVQKLANN------IMNKKECLFLDTVDKNEPEAH-- 254
Query: 365 XXXXXXXXXXXQAKQADQSLPPALKH----YYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
++ DQS+ + K + V ++ ++ A+ + F
Sbjct: 255 -------------ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFT 301
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
+ + FK + + E HG + + R++ +K+FK E +LV ++ ARG+D
Sbjct: 302 SFLCSILKNEFK---KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFP 358
Query: 481 ECDLVVNLDLPTDSIHYAHR 500
V+ + +P++ +Y HR
Sbjct: 359 NVHEVLQIGVPSELANYIHR 378
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 174/380 (45%), Gaps = 59/380 (15%)
Query: 134 TEVQSAAIPSIL--KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD 191
T VQ I IL ++HDV+ ++ TG+GKT A+L+PI + N + +
Sbjct: 96 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL---------INTKFDSQYM 146
Query: 192 IEAVIVAPSRELGMQIVREIKKLLGPS---DKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
++AVIVAP+R+L +QI E+KK+ + K A LVGG + + K +P IV+
Sbjct: 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVI 206
Query: 249 GTPGRIAEISAAGKLHTHGCRFL---VLDEIDELLSFNFREAMHRIVEHVGRRSGA-NPR 304
TPGR+ I K RF+ VLDE D LL FR+ + I SG N +
Sbjct: 207 ATPGRL--IDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETI-------SGILNEK 257
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXX 364
KSA ++ T++ SAT+ V + A + ++ K + L+++
Sbjct: 258 NSKSADNIK----TLLFSATLDDKVQKLANN------IMNKKECLFLDTVDKNEPEAH-- 305
Query: 365 XXXXXXXXXXXQAKQADQSLPPALKH----YYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
++ DQS+ + K + V ++ ++ A+ + F
Sbjct: 306 -------------ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFT 352
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
+ + FK + + E HG + + R++ +K+FK E +LV ++ ARG+D
Sbjct: 353 SFLCSILKNEFK---KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFP 409
Query: 481 ECDLVVNLDLPTDSIHYAHR 500
V+ + +P++ +Y HR
Sbjct: 410 NVHEVLQIGVPSELANYIHR 429
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 182/405 (44%), Gaps = 60/405 (14%)
Query: 134 TEVQSAAIPSIL--KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD 191
T VQ I IL ++HDV+ ++ TG+GKT A+L+PI + N + +
Sbjct: 45 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL---------INTKFDSQYM 95
Query: 192 IEAVIVAPSRELGMQIVREIKKLLGPS---DKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
++AVIVAP+R+L +QI E+KK+ + K A LVGG + + K +P IV+
Sbjct: 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVI 155
Query: 249 GTPGRIAEISAAGKLHTHGCRFL---VLDEIDELLSFNFREAMHRIVEHVGRRSGA-NPR 304
TPGR+ I K RF+ VLDE D LL FR+ + I SG N +
Sbjct: 156 ATPGRL--IDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETI-------SGILNEK 206
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXX 364
KSA ++ T++ SAT+ V + A + ++ K + L+++
Sbjct: 207 NSKSADNIK----TLLFSATLDDKVQKLANN------IMNKKECLFLDTVDKNEPEAH-- 254
Query: 365 XXXXXXXXXXXQAKQADQSLPPALKH----YYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420
++ DQS+ + K + V ++ ++ A+ + F
Sbjct: 255 -------------ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFT 301
Query: 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480
+ + FK + + E HG + + R++ +K+FK E +LV ++ ARG+D
Sbjct: 302 SFLCSILKNEFK---KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFP 358
Query: 481 ECDLVVNLDLPTDSIHYAHR-AXXXXXXXXXXXVVSICEEPEVFV 524
V+ + +P++ +Y HR V+ IC++ FV
Sbjct: 359 NVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFV 403
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 104/217 (47%), Gaps = 34/217 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F PTE+Q IP L+ V QS TG+GKT AYLLPI K+ P ++
Sbjct: 24 FYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKP-------------ER 70
Query: 190 TDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQ-LVGGANRSRQEEALRKNKPAI 246
+++AVI AP+REL QI E K+ P D+ V + L+GG ++ + E L +P I
Sbjct: 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKL-NVQPHI 129
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREP 306
V+GTPGRI + L H LV+DE D L F + +I R P
Sbjct: 130 VIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAA----------RXP 179
Query: 307 KSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
K + Q ++ SAT+P + + + +P V
Sbjct: 180 K-------DLQXLVFSATIPEKLKPFLKKYXENPTFV 209
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 111/220 (50%), Gaps = 34/220 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
PT +Q+AA+P L+ D++ Q+ TG+GKTLA+ LPI ++ P + E G+K
Sbjct: 21 LTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAP--------SQERGRK 72
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++ P+REL +Q+ E+ + P K V + GG +Q+EAL + A VV
Sbjct: 73 P--RALVLTPTRELALQVASELTA-VAPHLK--VVAVYGGTGYGKQKEALLRGADA-VVA 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR + G L VLDE DE+LS F E + ++ A P
Sbjct: 127 TPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLS-------ATP------ 173
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RQT++ SAT+P R A + +P+L+ NVI
Sbjct: 174 ----PSRQTLLFSATLPSWAKRLAERYMKNPVLI---NVI 206
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 156/374 (41%), Gaps = 87/374 (23%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F TEVQS IP +L+ +VV+++ TGSGKT AY +PIL E G K
Sbjct: 14 FKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL---------------ELGMK 58
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ ++V P+REL Q+ I+ + D K V ++ GG Q +R IVV
Sbjct: 59 S----LVVTPTRELTRQVASHIRDIGRYMDTK-VAEVYGGMPYKAQINRVR--NADIVVA 111
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ ++ + G + +++DE D + F + + I+ R
Sbjct: 112 TPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNR----------- 160
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXX 369
+ T + SAT+P + + + + + E + A
Sbjct: 161 ------KITGLFSATIPEEIRKVVKDF-----------ITNYEEIEACIGL--------- 194
Query: 370 XXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL---DAQTVIAFMNNTRQL 426
++H + H D R V AL + VI F+ +
Sbjct: 195 ----------------ANVEHKFV-----HVKDDWRSKVQALRENKDKGVIVFV----RT 229
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
++ V KL A EL GDL + R+ + F+ GE +L+T ++++RGLD+ + V+
Sbjct: 230 RNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI 289
Query: 487 NLDLPTDSIHYAHR 500
N D P D Y HR
Sbjct: 290 NFDAPQDLRTYIHR 303
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 23/221 (10%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ PT +Q AIP+IL++ D++ + TGSGKT A+L+PI++ + + N + K
Sbjct: 43 YQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL-----VCQDLNQQRYSK 97
Query: 190 TDI-EAVIVAPSRELGMQIVREIKKL-LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
T + +I+AP+REL +QI+ E +K L + V + GGA+ Q ++ ++
Sbjct: 98 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCV--VYGGADTHSQIREVQMGC-HLL 154
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
V TPGR+ + K+ C+++VLDE D +L F + +I+E SG N
Sbjct: 155 VATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN----- 209
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348
RQT+M SAT P + + A + ++ + + V
Sbjct: 210 --------RQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP--ILSKVGPLKDKSSNGNGESGKKT 190
PT +QS A P IL+ D+++ + TG+GKTL+YL+P I P+ + NG G
Sbjct: 43 PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPG------ 96
Query: 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGT 250
+++ P+REL + + E K K + GG NR+ Q E + K I++ T
Sbjct: 97 ---MLVLTPTRELALHVEAECSKYSYKGLKSIC--IYGGRNRNGQIEDISKGV-DIIIAT 150
Query: 251 PGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310
PGR+ ++ ++ +LV+DE D++L F + +I+ L
Sbjct: 151 PGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL-----------------L 193
Query: 311 AMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343
+R +RQT+M SAT P +V + A S+ DP++V
Sbjct: 194 DVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 34/220 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
PT +++AA+P L+ D++ Q+ TG+GKTLA+ LPI ++ P + E G+K
Sbjct: 21 LTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAP--------SQERGRK 72
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+++ P+REL +Q+ E+ + P K V + GG +Q+EAL + A VV
Sbjct: 73 P--RALVLTPTRELALQVASELTA-VAPHLK--VVAVYGGTGYGKQKEALLRGADA-VVA 126
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR + G L VLDE DE+LS F E + ++ A P
Sbjct: 127 TPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALL-------SATP------ 173
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349
RQT++ SAT+P R A + +P+L+ NVI
Sbjct: 174 ----PSRQTLLFSATLPSWAKRLAERYMKNPVLI---NVI 206
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 161/383 (42%), Gaps = 83/383 (21%)
Query: 130 FNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
F P+++Q A+P +L N +++ QS +G+GKT A+ L +L++V P +D S
Sbjct: 25 FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-EDASP------- 76
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNK---P 244
+A+ +APSREL Q + E+ + +G K Q +V ++ KNK
Sbjct: 77 -----QAICLAPSRELARQTL-EVVQEMGKFTKITSQLIV--------PDSFEKNKQINA 122
Query: 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
++VGTPG + ++ + + VLDE D +L + G +
Sbjct: 123 QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD----------------QQGLGDQ 166
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXX 364
+ + + Q ++ SAT +V + A+ +V N + L
Sbjct: 167 CIRVKRFLPKDTQLVLFSATFADAVRQYAKK------IVPNANTLEL------------- 207
Query: 365 XXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQ-HKVDTLRRCVHALDAQTVIAFMNNT 423
Q ++ A+K Y K + K D L + + I F+
Sbjct: 208 --------------QTNEVNVDAIKQLYMDCKNEADKFDVLTELYGVMTIGSSIIFVATK 253
Query: 424 RQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECD 483
+ KL++ G + + LHGDL R + F+ G +VL+T + ARG+D+
Sbjct: 254 KTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVS 313
Query: 484 LVVNLDLPT------DSIHYAHR 500
+VVN DLPT D Y HR
Sbjct: 314 MVVNYDLPTLANGQADPATYIHR 336
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 161/383 (42%), Gaps = 83/383 (21%)
Query: 130 FNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
F P+++Q A+P +L N +++ QS +G+GKT A+ L +L++V P +D S
Sbjct: 25 FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-EDASP------- 76
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNK---P 244
+A+ +APSREL Q + E+ + +G K Q +V ++ KNK
Sbjct: 77 -----QAICLAPSRELARQTL-EVVQEMGKFTKITSQLIV--------PDSFEKNKQINA 122
Query: 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
++VGTPG + ++ + + VLDE D +L + G +
Sbjct: 123 QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD----------------QQGLGDQ 166
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXX 364
+ + + Q ++ SAT +V + A+ +V N + L
Sbjct: 167 CIRVKRFLPKDTQLVLFSATFADAVRQYAKK------IVPNANTLEL------------- 207
Query: 365 XXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQ-HKVDTLRRCVHALDAQTVIAFMNNT 423
Q ++ A+K Y K + K D L + + I F+
Sbjct: 208 --------------QTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATK 253
Query: 424 RQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECD 483
+ KL++ G + + LHGDL R + F+ G +VL+T + ARG+D+
Sbjct: 254 KTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVS 313
Query: 484 LVVNLDLPT------DSIHYAHR 500
+VVN DLPT D Y HR
Sbjct: 314 MVVNYDLPTLANGQADPATYIHR 336
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 31/217 (14%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI +K +DV+ Q+ +G+GKT + + IL ++ ++ K +
Sbjct: 50 FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL-EIEFKET--------- 99
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL QI + I L G +GG N + + L+ P IVVG
Sbjct: 100 ---QALVLAPTRELAQQIQKVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 155
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ ++ L + VLDE DE+LS F++ ++ I +
Sbjct: 156 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK--------------- 200
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
+ Q +++SAT+P V+ + + DP+ + K
Sbjct: 201 --LNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 33/214 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+EVQ IP + DV+ Q+ +G GKT ++L L ++ P+ + S
Sbjct: 34 FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS--------- 84
Query: 190 TDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++ +REL QI +E ++ P+ K AV GG + + EE L+KN P IV
Sbjct: 85 ----VLVMCHTRELAFQISKEYERFSKYMPNVKVAV--FFGGLSIKKDEEVLKKNCPHIV 138
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
VGTPGRI ++ L+ + +LDE D++L + M R V+ + R + P
Sbjct: 139 VGTPGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFRMT---PH--- 189
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
E+Q +M SAT+ + R + DP+
Sbjct: 190 -------EKQVMMFSATLSKEIRPVCRKFMQDPM 216
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 30/206 (14%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
+ + TE+Q I L+ DV+ + TGSGKTLA+L+P+L + L+ S++G G
Sbjct: 45 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLG----- 99
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+I++P+REL Q ++K +G + + ++GG + + EA R N I+V
Sbjct: 100 ----VLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGG--KDLKHEAERINNINILVC 152
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGR+ + + H + LVLDE D +L F + M+ ++E++ PK
Sbjct: 153 TPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL----------PK- 201
Query: 309 ALAMRAERQTIMVSATVPFSVIRAAR 334
+RQT++ SAT SV AR
Sbjct: 202 ------KRQTLLFSATQTKSVKDLAR 221
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 158/369 (42%), Gaps = 72/369 (19%)
Query: 130 FNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
FN P+++Q A+P +L +++ QS +G+GKT A++L +LS+V P
Sbjct: 45 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-------- 96
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPA 245
+ + ++P+ EL +Q + I+++ P K A A R + E +K
Sbjct: 97 -----QCLCLSPTYELALQTGKVIEQMGKFYPELKLAY------AVRGNKLERGQKISEQ 145
Query: 246 IVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
IV+GTPG + + + K + + VLDE D +++ + ++ + R+
Sbjct: 146 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC---- 201
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXX 364
Q ++ SAT SV + A+ DP NVI L
Sbjct: 202 ------------QMLLFSATFEDSVWKFAQKVVPDP------NVIKL------------- 230
Query: 365 XXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
K+ +++L ++Y + K L A+ + F + +
Sbjct: 231 -------------KREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRK 277
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
+L G + A L G++ R+ +++F+ G+ +VLVT + ARG+DV + +
Sbjct: 278 TASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 337
Query: 485 VVNLDLPTD 493
V+N DLP D
Sbjct: 338 VINFDLPVD 346
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 158/369 (42%), Gaps = 72/369 (19%)
Query: 130 FNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
FN P+++Q A+P +L +++ QS +G+GKT A++L +LS+V P
Sbjct: 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-------- 163
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPA 245
+ + ++P+ EL +Q + I+++ P K A A R + E +K
Sbjct: 164 -----QCLCLSPTYELALQTGKVIEQMGKFYPELKLAY------AVRGNKLERGQKISEQ 212
Query: 246 IVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
IV+GTPG + + + K + + VLDE D +++ + ++ + R+
Sbjct: 213 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC---- 268
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXX 364
Q ++ SAT SV + A+ DP NVI L
Sbjct: 269 ------------QMLLFSATFEDSVWKFAQKVVPDP------NVIKL------------- 297
Query: 365 XXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
K+ +++L ++Y + K L A+ + F + +
Sbjct: 298 -------------KREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRK 344
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
+L G + A L G++ R+ +++F+ G+ +VLVT + ARG+DV + +
Sbjct: 345 TASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404
Query: 485 VVNLDLPTD 493
V+N DLP D
Sbjct: 405 VINFDLPVD 413
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 158/369 (42%), Gaps = 72/369 (19%)
Query: 130 FNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
FN P+++Q A+P +L +++ QS +G+GKT A++L +LS+V P
Sbjct: 61 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-------- 112
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPA 245
+ + ++P+ EL +Q + I+++ P K A A R + E +K
Sbjct: 113 -----QCLCLSPTYELALQTGKVIEQMGKFYPELKLAY------AVRGNKLERGQKISEQ 161
Query: 246 IVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
IV+GTPG + + + K + + VLDE D +++ + ++ + R+
Sbjct: 162 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC---- 217
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXX 364
Q ++ SAT SV + A+ DP NVI L
Sbjct: 218 ------------QMLLFSATFEDSVWKFAQKVVPDP------NVIKL------------- 246
Query: 365 XXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
K+ +++L ++Y + K L A+ + F + +
Sbjct: 247 -------------KREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRK 293
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
+L G + A L G++ R+ +++F+ G+ +VLVT + ARG+DV + +
Sbjct: 294 TASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 353
Query: 485 VVNLDLPTD 493
V+N DLP D
Sbjct: 354 VINFDLPVD 362
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 158/369 (42%), Gaps = 72/369 (19%)
Query: 130 FNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
FN P+++Q A+P +L +++ QS +G+GKT A++L +LS+V P
Sbjct: 82 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-------- 133
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPA 245
+ + ++P+ EL +Q + I+++ P K A A R + E +K
Sbjct: 134 -----QCLCLSPTYELALQTGKVIEQMGKFYPELKLAY------AVRGNKLERGQKISEQ 182
Query: 246 IVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
IV+GTPG + + + K + + VLDE D +++ + ++ + R+
Sbjct: 183 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC---- 238
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXX 364
Q ++ SAT SV + A+ DP NVI L
Sbjct: 239 ------------QMLLFSATFEDSVWKFAQKVVPDP------NVIKL------------- 267
Query: 365 XXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424
K+ +++L ++Y + K L A+ + F + +
Sbjct: 268 -------------KREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRK 314
Query: 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484
+L G + A L G++ R+ +++F+ G+ +VLVT + ARG+DV + +
Sbjct: 315 TASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 374
Query: 485 VVNLDLPTD 493
V+N DLP D
Sbjct: 375 VINFDLPVD 383
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 33/217 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I++ HDV+ Q+ +G+GKT + + L ++ D S
Sbjct: 34 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI----DTSVKAP------ 83
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL +QI + + L D K V +GG + E LR + IVVG
Sbjct: 84 ---QALMLAPTRELALQIQKVVMALAFHMDIK-VHACIGGTSFVEDAEGLRDAQ--IVVG 137
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ + + T + +LDE DE+LS F+E +++I + P +
Sbjct: 138 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL----------PPTT 187
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
Q +++SAT+P V+ + +P+ + K
Sbjct: 188 -------QVVLLSATMPNDVLEVTTKFMRNPVRILVK 217
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 33/212 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI I++ HDV+ Q+ +G+GKT + + L ++ D S
Sbjct: 41 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI----DTSVKAP------ 90
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+A+++AP+REL +QI + + L D K V +GG + E LR + IVVG
Sbjct: 91 ---QALMLAPTRELALQIQKVVMALAFHMDIK-VHACIGGTSFVEDAEGLRDAQ--IVVG 144
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSA 309
TPGR+ + + T + +LDE DE+LS F+E +++I + P +
Sbjct: 145 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL----------PPTT 194
Query: 310 LAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
Q +++SAT+P V+ + +P+
Sbjct: 195 -------QVVLLSATMPNDVLEVTTKFMRNPV 219
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 39/212 (18%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
P+ +Q +IP L D++ ++ G+GK+ AYL+P+L ++ KK +I
Sbjct: 26 PSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL-------------DLKKDNI 72
Query: 193 EAVIVAPSRELGMQIVR---EIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA-IVV 248
+A+++ P+REL +Q+ + ++ K +G + V GG N +++ +R + +V+
Sbjct: 73 QAMVIVPTRELALQVSQICIQVSKHMGGA---KVMATTGGTN--LRDDIMRLDDTVHVVI 127
Query: 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGRI ++ G + +VLDE D+LLS +F + M I+
Sbjct: 128 ATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDII---------------- 171
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340
L + RQ ++ SAT P SV + S P
Sbjct: 172 -LTLPKNRQILLYSATFPLSVQKFMNSHLEKP 202
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 37/215 (17%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ +Q AI + +DV+ Q+ +G+G T + + IL ++ +
Sbjct: 35 FEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQI----------------E 78
Query: 190 TDI---EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAI 246
D+ +A+++AP+REL QI + + LG + +GG N + + L+ P I
Sbjct: 79 LDLXATQALVLAPTRELAQQI-QXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHI 137
Query: 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREP 306
+VGTPGR+ ++ L VLDE DE+LS F + ++ I +
Sbjct: 138 IVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQ------------- 184
Query: 307 KSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341
+ + Q +++SAT+P V+ + DP+
Sbjct: 185 ----XLNSNTQVVLLSATMPSDVLEVTXXFMRDPI 215
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 31/212 (14%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG--PLKDKSSNGNGESG 187
F PT +Q+ P L D+V + TGSGKTL+YLLP + + P ++ G+G
Sbjct: 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPI- 104
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++AP+REL Q V+++ + + + GGA + Q L + I
Sbjct: 105 ------CLVLAPTRELAQQ-VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV-EIC 156
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
+ TPGR+ + GK + +LVLDE D +L F + +IV+ +
Sbjct: 157 IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI------------ 204
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
R +RQT+M SAT P V + A + D
Sbjct: 205 -----RPDRQTLMWSATWPKEVRQLAEDFLKD 231
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 31/212 (14%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG--PLKDKSSNGNGESG 187
F PT +Q+ P L D+V + TGSGKTL+YLLP + + P ++ G+G
Sbjct: 63 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLER---GDGPI- 118
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247
+++AP+REL Q V+++ + + + GGA + Q L + I
Sbjct: 119 ------CLVLAPTRELAQQ-VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV-EIC 170
Query: 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307
+ TPGR+ + GK + +LVLDE D +L F + +IV+ +
Sbjct: 171 IATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI------------ 218
Query: 308 SALAMRAERQTIMVSATVPFSVIRAARSWGHD 339
R +RQT+M SAT P V + A + D
Sbjct: 219 -----RPDRQTLMWSATWPKEVRQLAEDFLKD 245
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 33/210 (15%)
Query: 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
PT++Q AIP L+ D++ + TGSGKT A+ LPIL N E+ ++ +
Sbjct: 66 PTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL-----------NALLETPQR--L 112
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
A+++ P+REL QI + + LG S +VGG + Q AL K KP I++ TPG
Sbjct: 113 FALVLTPTRELAFQISEQFEA-LGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPG 170
Query: 253 RIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALA 311
R+ + + + ++LV+DE D +L+ +F + +I++ + R
Sbjct: 171 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR-------------- 216
Query: 312 MRAERQTIMVSATVPFSVIRAARSWGHDPL 341
+R+T + SAT+ V + R+ +P+
Sbjct: 217 ---DRKTFLFSATMTKKVQKLQRAALKNPV 243
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 30/216 (13%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F TE+Q +I +L+ D++ + TGSGKTLA+L+P + + L+ NG G
Sbjct: 74 FTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG----- 128
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+I++P+REL MQ +K+L+ ++GG+NRS + + L N I+V
Sbjct: 129 ----VLILSPTRELAMQTFGVLKELM-THHVHTYGLIMGGSNRSAEAQKL-GNGINIIVA 182
Query: 250 TPGRIAE-ISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKS 308
TPGR+ + + + LV+DE D +L F E + +I++ + R
Sbjct: 183 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR---------- 232
Query: 309 ALAMRAERQTIMVSATVPFSVIRAAR-SWGHDPLLV 343
RQT++ SAT V AR S +PL V
Sbjct: 233 -------RQTMLFSATQTRKVEDLARISLKKEPLYV 261
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 149/374 (39%), Gaps = 75/374 (20%)
Query: 135 EVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192
++Q A+P +L N +++ QS +G+GKT A+ L +LS+V K
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKP------------- 190
Query: 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPG 252
+A+ +APSREL QI+ + ++ ++ K + + + +A IV+GTPG
Sbjct: 191 QAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDA------QIVIGTPG 244
Query: 253 RIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAM 312
+ ++ +L + VLDE D +L ++H+ R+
Sbjct: 245 TVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRN------------- 291
Query: 313 RAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXXXXX 372
Q ++ SAT V + A + + N I L
Sbjct: 292 ---TQIVLFSATFSERVEKYAERFAPNA------NEIRL--------------------- 321
Query: 373 XXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK 432
K + S+ + Y +HK + L L I F ++ +
Sbjct: 322 -----KTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARR 376
Query: 433 LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT 492
+ A G A L G+L R + F+ G +VLVT + ARG+DV++ +LVVN D+P
Sbjct: 377 MTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPL 436
Query: 493 DSI------HYAHR 500
D Y HR
Sbjct: 437 DQAGRPDPQTYLHR 450
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 387 ALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHG 445
+K +Y V + ++K + L ++ + F N R++++ KL + ++
Sbjct: 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 62
Query: 446 DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXX 505
DL + R T +K+F++G R+L++ +L ARG+DV + LV+N DLP + +Y HR
Sbjct: 63 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGG 122
Query: 506 XXXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
++ +V +++++K + I+
Sbjct: 123 RFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 154
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 31/190 (16%)
Query: 101 EIESAP----FAANSFXXXXXXXXXXXXXXXXXFNVPTEVQSAAIPSILKN--HDVVIQS 154
+I++ P ++A SF F P+++Q A+P +L N +++ QS
Sbjct: 9 DIQADPNSPLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQS 68
Query: 155 YTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214
+G+GKT A+ L +L++V P +D S +A+ +APSREL Q + E+ +
Sbjct: 69 QSGTGKTAAFSLTMLTRVNP-EDASP------------QAICLAPSRELARQTL-EVVQE 114
Query: 215 LGPSDKKAVQQLVGGANRSRQEEALRKNK---PAIVVGTPGRIAEISAAGKLHTHGCRFL 271
+G K Q +V ++ KNK ++VGTPG + ++ + +
Sbjct: 115 MGKFTKITSQLIV--------PDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIF 166
Query: 272 VLDEIDELLS 281
VLDE D +L
Sbjct: 167 VLDEADNMLD 176
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%)
Query: 391 YYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKL 450
YY L+HK L + +A I F+ ++ + L G+ L G++ +
Sbjct: 8 YYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQG 67
Query: 451 ARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXX 510
R+ +K+ G V VLV +++ARG+D+ + V N D+P Y HR
Sbjct: 68 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 127
Query: 511 XXVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGR 545
+S+ E + ++ K+ + + PI+A E R
Sbjct: 128 GTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELR 162
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 33/216 (15%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F P+ VQ AIP D+++Q+ +G+GKT + L + L++ S+
Sbjct: 44 FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSL-VLENLST--------- 93
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
+ +I+AP+RE+ +QI I + + +GG S+ + L+K I VG
Sbjct: 94 ---QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCH--IAVG 148
Query: 250 TPGRIAEISAAGKLHTHGCRFLVLDEIDELL-SFNFREAMHRIVEHVGRRSGANPREPKS 308
+PGRI ++ L+ R +LDE D+LL +F+E ++ I
Sbjct: 149 SPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS--------------- 193
Query: 309 ALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344
++ A +Q + VSAT P + A + DP V+
Sbjct: 194 --SLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 422 NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAE 481
T ++ + +L G A LHGDL + R L F+ GEVRVLV +++ARGLD+ +
Sbjct: 43 ETEEIAQGLLRL---GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQ 99
Query: 482 CDLVVNLDLPTDSIHYAH 499
DLVV+ LP + Y H
Sbjct: 100 VDLVVHYRLPDRAEAYQH 117
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 422 NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAE 481
T ++ + +L G A LHGD+ + R + F+ GEVRVLV +++ARGLD+ +
Sbjct: 40 ETEEIAQGLLRL---GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQ 96
Query: 482 CDLVVNLDLPTDSIHYAH 499
DLVV+ +P + Y H
Sbjct: 97 VDLVVHYRMPDRAEAYQH 114
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%)
Query: 387 ALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
+ YY + KV L L I F N++++++ K+ G +H
Sbjct: 18 GVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAK 77
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXX 506
+ + R+ F+NG R LV +L RG+D+ ++V+N D P + Y HR
Sbjct: 78 MRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGR 137
Query: 507 XXXXXXVVSICEEPEVFVVKKMQKQLAVPIQ 537
+++ + F +K +++QL I+
Sbjct: 138 FGHLGLAINLITYDDRFNLKSIEEQLGTEIK 168
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 66/153 (43%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447
++H + ++K L+ + + + I F + +L+ G ++HG +
Sbjct: 10 IEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGM 69
Query: 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXX 507
+ R + +FK GE R LV +++ARG+D+ LV+N DLP + Y HR
Sbjct: 70 IQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRA 129
Query: 508 XXXXXVVSICEEPEVFVVKKMQKQLAVPIQACE 540
+S E + +++ + IQ E
Sbjct: 130 GNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 15/153 (9%)
Query: 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189
F +PT +Q AIP +L +++ + TGSGKTLA+ +PIL + LK ++ G
Sbjct: 49 FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ---LKQPANKG------- 98
Query: 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVG 249
A+I++P+REL QI RE+ K+ + + + + A +++ K I+V
Sbjct: 99 --FRALIISPTRELASQIHRELIKISEGTGFR-IHMIHKAAVAAKKFGPKSSKKFDILVT 155
Query: 250 TPGRIAEISAAGK--LHTHGCRFLVLDEIDELL 280
TP R+ + + +LV+DE D+L
Sbjct: 156 TPNRLIYLLKQDPPGIDLASVEWLVVDESDKLF 188
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 387 ALKHYYCVTKLQ-HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHG 445
A+K Y K + K D L + + I F+ + KL++ G + + LHG
Sbjct: 8 AIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 67
Query: 446 DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT------DSIHYAH 499
DL R + F+ G +VL+T + ARG+D+ +VVN DLPT D Y H
Sbjct: 68 DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIH 127
Query: 500 R 500
R
Sbjct: 128 R 128
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTV---IAFMNNTRQLKDAVFKLEARGMKAAELH 444
++ YY + +H+ D + + + T+ I F R K ++ G + + L
Sbjct: 8 IRQYYVLC--EHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLS 65
Query: 445 GDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT------DSIHYA 498
G+L R++ +++F++G+ +VL+T + ARG+DV + +VVN DLP D Y
Sbjct: 66 GELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYL 125
Query: 499 HR 500
HR
Sbjct: 126 HR 127
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 8/155 (5%)
Query: 387 ALKHYYCVTKLQ-HKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHG 445
A+K Y K + K D L + I F+ + KL++ G + + LHG
Sbjct: 9 AIKQLYXDCKNEADKFDVLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 68
Query: 446 DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT------DSIHYAH 499
DL R + F+ G +VL+T + ARG+D+ VVN DLPT D Y H
Sbjct: 69 DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIH 128
Query: 500 RAXXXXXXXXXXXVVSICEEPEVF-VVKKMQKQLA 533
R +S + F ++ +QK
Sbjct: 129 RIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 163
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%)
Query: 433 LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT 492
L G +HGD + R L +F++G+ +LV ++ARGLD++ V+N DLP+
Sbjct: 66 LYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS 125
Query: 493 DSIHYAHRAXXXXXXXXXXXVVSICEEPEVFVVKKM 528
D Y HR S E + + K +
Sbjct: 126 DIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 161
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 432 KLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP 491
KL++ G + + LHGDL R + F+ G +VL+T + ARG+D+ VVN DLP
Sbjct: 56 KLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLP 115
Query: 492 T------DSIHYAHRAXXXXXXXXXXXVVSICEEPEVF-VVKKMQKQLA 533
T D Y HR +S + F ++ +QK
Sbjct: 116 TLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 164
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 40/222 (18%)
Query: 130 FNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
FN P+++Q A+P +L +++ QS +G+GKT A++L +LS+V P
Sbjct: 45 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-------- 96
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPA 245
+ + ++P+ EL +Q + I+++ P K A A R + E +K
Sbjct: 97 -----QCLCLSPTYELALQTGKVIEQMGKFYPELKLAY------AVRGNKLERGQKISEQ 145
Query: 246 IVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
IV+GTPG + + + K + + VLDE D +++ + ++ + R+
Sbjct: 146 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC---- 201
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
Q ++ SAT SV + A+ DP +++ K
Sbjct: 202 ------------QMLLFSATFEDSVWKFAQKVVPDPNVIKLK 231
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 40/222 (18%)
Query: 130 FNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187
FN P+++Q A+P +L +++ QS +G+GKT A++L +LS+V P
Sbjct: 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-------- 163
Query: 188 KKTDIEAVIVAPSRELGMQIVREIKKL--LGPSDKKAVQQLVGGANRSRQEEALRKNKPA 245
+ + ++P+ EL +Q + I+++ P K A A R + E +K
Sbjct: 164 -----QCLCLSPTYELALQTGKVIEQMGKFYPELKLAY------AVRGNKLERGQKISEQ 212
Query: 246 IVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304
IV+GTPG + + + K + + VLDE D +++ + ++ + R+
Sbjct: 213 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC---- 268
Query: 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346
Q ++ SAT SV + A+ DP +++ K
Sbjct: 269 ------------QMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 1/151 (0%)
Query: 387 ALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446
L+ YY K K L + L+ V+ F+ + ++ L + A +H
Sbjct: 5 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 64
Query: 447 LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR-AXXXX 505
+ + R + ++FK+ + R+LV L RG+D+ ++ N D+P DS Y HR A
Sbjct: 65 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 124
Query: 506 XXXXXXXVVSICEEPEVFVVKKMQKQLAVPI 536
+ + +E + ++ +Q + V I
Sbjct: 125 FGTKGLAITFVSDENDAKILNDVQDRFEVNI 155
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 436 RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSI 495
+G++A +HG + R+ ++ F+ G+ VLV +++++GLD V+N D+P +
Sbjct: 77 KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIE 136
Query: 496 HYAHR 500
+Y HR
Sbjct: 137 NYVHR 141
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
E HG + + R++ +K+FK E +LV ++ ARG+D V+ + +P++ +Y HR
Sbjct: 65 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 123
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
E HG + + R++ +K+FK E +LV ++ ARG+D V+ + +P++ +Y HR
Sbjct: 65 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 123
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500
E HG + + R++ +K+FK E +LV ++ ARG+D V+ + +P++ +Y HR
Sbjct: 65 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHR 123
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
+D L R V ++ I + N+ +++D +L+++G+ AA H L R+ +KF+
Sbjct: 224 LDQLXRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ 283
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+++++V G++ VV+ D+P + Y
Sbjct: 284 RDDLQIVVATVAFGXGINKPNVRFVVHFDIPRNIESY 320
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 401 VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK 460
+D L R V ++ I + N+ +++D +L+++G+ AA H L R+ +KF+
Sbjct: 224 LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ 283
Query: 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497
+++++V G++ VV+ D+P + Y
Sbjct: 284 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY 320
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGD--------LGKLARSTTLKKFKNGEVRVL 467
+I F N K V +L G+KA G L + + L +F GE VL
Sbjct: 364 IIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 423
Query: 468 VTNELSARGLDVAECDLVV 486
V + GLDV E DLVV
Sbjct: 424 VATSVGEEGLDVPEVDLVV 442
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 130 FNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188
F +QS + L+ + ++++ + TG+GKT L+ +L ++G K N +G +
Sbjct: 77 FKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIG----KHINMDG-TIN 131
Query: 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
D + + +AP R L ++V K L + V +L G ++E + + I+V
Sbjct: 132 VDDFKIIYIAPMRSLVQEMVGSFGKRLA-TYGITVAELTGDHQLCKEEISATQ----IIV 186
Query: 249 GTPGRIAEISAAG--KLHTHGCRFLVLDEI 276
TP + I+ G + +T R ++LDEI
Sbjct: 187 CTPEKWDIITRKGGERTYTQLVRLIILDEI 216
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 130 FNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188
F +QS + L+ + ++++ + TG+GKT L+ +L ++G K N +G +
Sbjct: 77 FKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIG----KHINMDG-TIN 131
Query: 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVV 248
D + + +AP R L ++V K L + V +L G ++E + + I+V
Sbjct: 132 VDDFKIIYIAPMRSLVQEMVGSFGKRLA-TYGITVAELTGDHQLCKEEISATQ----IIV 186
Query: 249 GTPGRIAEISAAG--KLHTHGCRFLVLDEI 276
TP + I+ G + +T R ++LDEI
Sbjct: 187 CTPEKWDIITRKGGERTYTQLVRLIILDEI 216
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSI 495
+ KF+ G++ +L+ ++ GLD+ EC++V+ L T+ I
Sbjct: 457 ISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEI 496
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
+D L+ G+K A LH ++ L R ++ + G+ VLV L GLD+ E LV
Sbjct: 484 EDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA 543
Query: 487 NLD 489
LD
Sbjct: 544 ILD 546
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
+D L+ G+K A LH ++ L R ++ + G+ VLV L GLD+ E LV
Sbjct: 459 EDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA 518
Query: 487 NLD 489
LD
Sbjct: 519 ILD 521
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
+D L+ G+K A LH ++ L R ++ + G+ VLV L GLD+ E LV
Sbjct: 459 EDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA 518
Query: 487 NLD 489
LD
Sbjct: 519 ILD 521
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
+D L+ G+K A LH ++ L R ++ + G+ VLV L GLD+ E LV
Sbjct: 458 EDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA 517
Query: 487 NLD 489
LD
Sbjct: 518 ILD 520
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
+D L+ G+K A LH ++ L R ++ + G+ VLV L GLD+ E LV
Sbjct: 459 EDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA 518
Query: 487 NLD 489
LD
Sbjct: 519 ILD 521
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 456 LKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT 492
+ KF+ G++ +L+ ++ GLD+ EC++V+ L T
Sbjct: 207 ISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVT 243
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
+D L+ G+K LH ++ L R ++ + G+ VLV L GLD+ E LV
Sbjct: 465 EDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA 524
Query: 487 NLD 489
LD
Sbjct: 525 ILD 527
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486
+D L+ G+K LH ++ L R ++ + G+ VLV L GLD+ E LV
Sbjct: 459 EDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA 518
Query: 487 NLD 489
LD
Sbjct: 519 ILD 521
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 451 ARSTTLKKFK-NGEVRVLVTNELSARGLDVAECDLVV 486
A+ L+ F+ +G+ +L+ ++ G+D+AEC+LV+
Sbjct: 439 AQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVI 475
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 451 ARSTTLKKFK-NGEVRVLVTNELSARGLDVAECDLVV 486
A+ L FK +G+ +L+ ++ G+D+A+C+LV+
Sbjct: 439 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 475
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 451 ARSTTLKKFK-NGEVRVLVTNELSARGLDVAECDLVV 486
A+ L FK +G+ +L+ ++ G+D+A+C+LV+
Sbjct: 447 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 483
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 451 ARSTTLKKFK-NGEVRVLVTNELSARGLDVAECDLVV 486
A+ L FK +G+ +L+ ++ G+D+A+C+LV+
Sbjct: 448 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 484
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,400,141
Number of Sequences: 62578
Number of extensions: 460980
Number of successful extensions: 1264
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 129
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)