Query 008602
Match_columns 560
No_of_seqs 374 out of 2487
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 14:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 2.2E-68 4.7E-73 493.4 30.9 374 108-546 59-433 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 1.2E-67 2.6E-72 522.0 38.1 368 110-533 91-461 (519)
3 COG0513 SrmB Superfamily II DN 100.0 1.5E-62 3.3E-67 508.6 42.2 368 110-537 29-398 (513)
4 KOG0328 Predicted ATP-dependen 100.0 1.5E-62 3.2E-67 435.6 29.4 371 107-542 24-395 (400)
5 PRK04837 ATP-dependent RNA hel 100.0 6.3E-61 1.4E-65 492.0 42.5 384 108-547 6-389 (423)
6 KOG0333 U5 snRNP-like RNA heli 100.0 1.4E-61 3E-66 463.6 34.3 395 99-532 234-636 (673)
7 PTZ00110 helicase; Provisional 100.0 7.4E-61 1.6E-65 501.0 42.8 378 101-537 121-501 (545)
8 PRK11776 ATP-dependent RNA hel 100.0 1.6E-60 3.5E-65 494.3 43.1 368 110-542 4-371 (460)
9 KOG0342 ATP-dependent RNA heli 100.0 4.7E-61 1E-65 458.1 31.9 381 107-548 79-462 (543)
10 PRK11634 ATP-dependent RNA hel 100.0 5.2E-60 1.1E-64 498.3 41.7 376 110-549 6-381 (629)
11 KOG0345 ATP-dependent RNA heli 100.0 1E-59 2.2E-64 445.7 34.9 378 111-544 5-388 (567)
12 PRK10590 ATP-dependent RNA hel 100.0 4.4E-59 9.5E-64 481.2 42.6 375 111-544 2-376 (456)
13 PLN00206 DEAD-box ATP-dependen 100.0 6.1E-59 1.3E-63 485.5 41.6 376 100-534 111-489 (518)
14 KOG0336 ATP-dependent RNA heli 100.0 3.1E-60 6.7E-65 441.0 27.7 377 103-538 212-590 (629)
15 COG1197 Mfd Transcription-repa 100.0 3.5E-61 7.6E-66 508.6 23.1 389 17-521 515-914 (1139)
16 KOG0343 RNA Helicase [RNA proc 100.0 9.8E-60 2.1E-64 453.1 30.7 376 108-544 67-446 (758)
17 KOG0338 ATP-dependent RNA heli 100.0 4.2E-60 9E-65 451.7 27.6 361 109-531 180-544 (691)
18 PRK04537 ATP-dependent RNA hel 100.0 1.9E-58 4.1E-63 484.2 42.1 382 107-544 6-388 (572)
19 KOG0340 ATP-dependent RNA heli 100.0 1.4E-59 3E-64 429.9 29.1 373 109-544 6-385 (442)
20 KOG0326 ATP-dependent RNA heli 100.0 1.7E-60 3.7E-65 429.5 22.6 371 108-544 83-453 (459)
21 PRK01297 ATP-dependent RNA hel 100.0 1.7E-57 3.6E-62 472.8 46.6 386 107-548 84-469 (475)
22 PRK11192 ATP-dependent RNA hel 100.0 2.2E-57 4.8E-62 468.2 43.0 370 111-541 2-373 (434)
23 KOG0348 ATP-dependent RNA heli 100.0 2.3E-58 4.9E-63 442.3 30.4 413 99-531 125-565 (708)
24 KOG0335 ATP-dependent RNA heli 100.0 3E-58 6.5E-63 447.1 30.5 397 92-539 56-463 (482)
25 KOG0347 RNA helicase [RNA proc 100.0 3.2E-58 6.8E-63 442.7 27.4 395 103-546 174-596 (731)
26 KOG0339 ATP-dependent RNA heli 100.0 3.1E-56 6.6E-61 424.8 33.5 374 101-533 214-588 (731)
27 PTZ00424 helicase 45; Provisio 100.0 2.9E-55 6.2E-60 449.6 42.3 369 109-542 27-396 (401)
28 KOG0341 DEAD-box protein abstr 100.0 2.3E-57 4.9E-62 419.2 18.3 373 99-528 159-537 (610)
29 TIGR00580 mfd transcription-re 100.0 8E-56 1.7E-60 479.2 29.9 387 16-520 371-770 (926)
30 KOG0346 RNA helicase [RNA proc 100.0 2.6E-55 5.7E-60 412.1 27.3 366 110-532 19-422 (569)
31 PRK10689 transcription-repair 100.0 1E-54 2.3E-59 480.4 29.0 388 16-520 520-919 (1147)
32 KOG0327 Translation initiation 100.0 5.8E-54 1.3E-58 399.2 26.8 371 110-546 26-396 (397)
33 KOG0332 ATP-dependent RNA heli 100.0 2.2E-53 4.8E-58 391.5 27.4 373 101-541 81-465 (477)
34 KOG0334 RNA helicase [RNA proc 100.0 2.1E-53 4.5E-58 441.3 28.7 375 100-534 355-734 (997)
35 KOG0350 DEAD-box ATP-dependent 100.0 7.2E-52 1.6E-56 394.9 29.3 382 111-534 128-554 (620)
36 TIGR03817 DECH_helic helicase/ 100.0 4.9E-51 1.1E-55 438.7 37.9 387 106-542 8-410 (742)
37 KOG4284 DEAD box protein [Tran 100.0 5.7E-52 1.2E-56 405.8 25.3 376 101-541 16-401 (980)
38 KOG0337 ATP-dependent RNA heli 100.0 2E-50 4.2E-55 377.5 23.4 364 110-537 21-385 (529)
39 PLN03137 ATP-dependent DNA hel 100.0 4.6E-48 1E-52 411.8 37.7 342 114-531 441-798 (1195)
40 TIGR00614 recQ_fam ATP-depende 100.0 5.2E-48 1.1E-52 399.9 36.1 329 126-530 5-343 (470)
41 KOG0344 ATP-dependent RNA heli 100.0 5.5E-49 1.2E-53 384.5 25.4 374 100-531 122-506 (593)
42 PRK11057 ATP-dependent DNA hel 100.0 1.8E-46 3.9E-51 398.1 37.6 331 121-528 13-351 (607)
43 PRK10917 ATP-dependent DNA hel 100.0 5.6E-46 1.2E-50 398.4 33.6 316 121-518 251-587 (681)
44 TIGR01389 recQ ATP-dependent D 100.0 1.2E-45 2.5E-50 393.6 34.3 327 127-530 8-341 (591)
45 TIGR00643 recG ATP-dependent D 100.0 1.9E-45 4.2E-50 391.9 33.7 319 120-518 224-564 (630)
46 PRK02362 ski2-like helicase; P 100.0 4.1E-45 8.9E-50 397.7 33.6 349 111-521 2-398 (737)
47 KOG0329 ATP-dependent RNA heli 100.0 4.2E-46 9E-51 326.3 17.0 341 102-540 34-376 (387)
48 PRK13767 ATP-dependent helicas 100.0 6.4E-44 1.4E-48 391.4 38.3 351 117-517 18-395 (876)
49 PRK00254 ski2-like helicase; P 100.0 7.3E-43 1.6E-47 379.2 34.6 344 111-521 2-389 (720)
50 COG1200 RecG RecG-like helicas 100.0 5.2E-43 1.1E-47 352.1 29.6 319 121-521 252-592 (677)
51 PRK01172 ski2-like helicase; P 100.0 2.8E-42 6.1E-47 373.2 32.5 340 111-521 2-379 (674)
52 COG1201 Lhr Lhr-like helicases 100.0 8.1E-42 1.8E-46 357.5 32.9 347 117-519 8-361 (814)
53 TIGR01970 DEAH_box_HrpB ATP-de 100.0 5.6E-41 1.2E-45 360.2 34.0 309 134-524 4-340 (819)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.7E-40 3.6E-45 349.6 33.5 317 128-517 12-388 (844)
55 COG0514 RecQ Superfamily II DN 100.0 8.3E-41 1.8E-45 337.7 27.8 328 127-531 12-348 (590)
56 PRK11664 ATP-dependent RNA hel 100.0 1.3E-40 2.8E-45 358.4 29.9 308 133-522 6-341 (812)
57 COG1111 MPH1 ERCC4-like helica 100.0 8.6E-40 1.9E-44 315.3 31.6 353 130-520 13-481 (542)
58 PHA02653 RNA helicase NPH-II; 100.0 7.4E-40 1.6E-44 343.4 30.4 328 134-529 166-523 (675)
59 PRK09401 reverse gyrase; Revie 100.0 1.2E-38 2.5E-43 353.8 35.4 306 124-492 72-410 (1176)
60 PRK09751 putative ATP-dependen 100.0 1E-38 2.2E-43 354.8 34.0 361 152-544 1-411 (1490)
61 COG1202 Superfamily II helicas 100.0 3.2E-39 6.9E-44 313.2 22.6 345 111-524 195-557 (830)
62 PHA02558 uvsW UvsW helicase; P 100.0 1.1E-37 2.3E-42 324.5 27.2 325 131-511 113-443 (501)
63 PRK14701 reverse gyrase; Provi 100.0 1.9E-37 4.1E-42 350.9 31.2 350 120-530 67-466 (1638)
64 TIGR01587 cas3_core CRISPR-ass 100.0 1.3E-36 2.8E-41 306.4 27.9 300 149-520 1-336 (358)
65 PRK12898 secA preprotein trans 100.0 2.8E-36 6.1E-41 311.1 30.5 337 128-524 100-590 (656)
66 COG1204 Superfamily II helicas 100.0 4.2E-36 9.1E-41 319.4 29.7 336 116-518 15-406 (766)
67 PRK09200 preprotein translocas 100.0 4.2E-36 9E-41 316.5 29.1 336 128-524 75-545 (790)
68 TIGR01054 rgy reverse gyrase. 100.0 1.8E-35 4E-40 328.9 34.5 309 121-492 67-409 (1171)
69 COG1205 Distinct helicase fami 100.0 1.4E-35 3E-40 319.9 31.7 371 118-548 56-455 (851)
70 TIGR00963 secA preprotein tran 100.0 3.4E-35 7.5E-40 304.5 30.5 363 128-524 53-521 (745)
71 PRK11131 ATP-dependent RNA hel 100.0 2.5E-35 5.4E-40 322.3 30.4 315 132-523 74-414 (1294)
72 KOG0349 Putative DEAD-box RNA 100.0 3.3E-36 7.2E-41 282.7 19.7 334 189-538 284-633 (725)
73 TIGR03714 secA2 accessory Sec 100.0 4.6E-35 1E-39 305.6 30.0 362 129-524 68-541 (762)
74 TIGR00603 rad25 DNA repair hel 100.0 5.2E-36 1.1E-40 312.7 22.3 329 132-521 255-608 (732)
75 PRK13766 Hef nuclease; Provisi 100.0 1.2E-34 2.5E-39 320.0 34.0 353 131-520 14-479 (773)
76 KOG0351 ATP-dependent DNA heli 100.0 1E-34 2.2E-39 310.5 27.4 336 120-531 252-603 (941)
77 PRK05580 primosome assembly pr 100.0 2.3E-34 4.9E-39 307.5 29.7 330 132-530 144-559 (679)
78 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.2E-34 6.9E-39 314.9 30.3 313 133-523 68-407 (1283)
79 KOG0354 DEAD-box like helicase 100.0 8.6E-35 1.9E-39 297.3 23.9 356 131-524 61-533 (746)
80 KOG0952 DNA/RNA helicase MER3/ 100.0 1.5E-34 3.2E-39 298.5 24.1 345 126-530 104-501 (1230)
81 KOG0352 ATP-dependent DNA heli 100.0 8.2E-35 1.8E-39 273.1 20.2 337 129-531 16-373 (641)
82 TIGR03158 cas3_cyano CRISPR-as 100.0 5E-33 1.1E-37 276.9 31.6 308 136-505 1-357 (357)
83 TIGR00595 priA primosomal prot 100.0 2.4E-33 5.2E-38 289.1 23.6 304 151-528 1-389 (505)
84 COG1643 HrpA HrpA-like helicas 100.0 3.1E-32 6.7E-37 288.0 25.9 311 132-521 50-388 (845)
85 KOG0353 ATP-dependent DNA heli 100.0 3.9E-32 8.5E-37 251.5 22.2 346 113-533 74-480 (695)
86 KOG0920 ATP-dependent RNA heli 100.0 2.2E-32 4.8E-37 287.5 21.1 395 115-554 156-581 (924)
87 PRK04914 ATP-dependent helicas 100.0 3.4E-31 7.3E-36 286.4 27.2 358 132-531 152-614 (956)
88 COG1061 SSL2 DNA or RNA helica 100.0 1.1E-31 2.3E-36 273.8 21.5 323 132-507 36-376 (442)
89 KOG0922 DEAH-box RNA helicase 100.0 1.3E-30 2.9E-35 260.0 24.6 314 132-522 51-392 (674)
90 KOG0947 Cytoplasmic exosomal R 100.0 5.1E-31 1.1E-35 269.4 21.1 349 123-520 289-723 (1248)
91 KOG0951 RNA helicase BRR2, DEA 100.0 1.4E-30 3E-35 272.5 24.4 345 129-530 306-712 (1674)
92 PRK09694 helicase Cas3; Provis 100.0 4.8E-29 1E-33 268.1 32.6 329 132-509 286-664 (878)
93 KOG0948 Nuclear exosomal RNA h 100.0 3.4E-31 7.5E-36 264.3 14.1 354 125-528 123-548 (1041)
94 COG4581 Superfamily II RNA hel 100.0 1.4E-29 3.1E-34 269.3 23.7 354 122-519 110-536 (1041)
95 cd00268 DEADc DEAD-box helicas 100.0 1.3E-28 2.8E-33 227.8 24.1 202 112-343 1-202 (203)
96 PRK13104 secA preprotein trans 100.0 2.8E-28 6E-33 256.7 27.9 367 129-524 80-591 (896)
97 PRK12904 preprotein translocas 100.0 4.1E-28 8.9E-33 255.3 28.4 363 128-524 78-577 (830)
98 PRK12906 secA preprotein trans 100.0 2.9E-28 6.2E-33 255.4 24.1 372 128-524 77-557 (796)
99 KOG0923 mRNA splicing factor A 100.0 3.6E-28 7.9E-33 240.0 23.0 312 128-519 261-605 (902)
100 COG1198 PriA Primosomal protei 100.0 3.5E-28 7.7E-33 253.6 21.8 350 132-549 198-627 (730)
101 KOG0924 mRNA splicing factor A 100.0 9.2E-28 2E-32 237.6 21.0 314 126-520 350-697 (1042)
102 COG4098 comFA Superfamily II D 100.0 2E-26 4.3E-31 211.6 27.9 307 132-525 97-421 (441)
103 PRK12899 secA preprotein trans 100.0 1.6E-26 3.5E-31 242.8 28.9 149 112-280 64-228 (970)
104 PRK11448 hsdR type I restricti 100.0 8.7E-27 1.9E-31 258.0 27.5 332 132-508 413-801 (1123)
105 PRK13107 preprotein translocas 99.9 1.1E-25 2.3E-30 236.4 25.0 369 129-523 80-594 (908)
106 PLN03142 Probable chromatin-re 99.9 7.2E-25 1.6E-29 238.2 27.0 363 132-533 169-614 (1033)
107 KOG0925 mRNA splicing factor A 99.9 2.8E-25 6.2E-30 212.4 20.2 326 109-520 24-387 (699)
108 PF00270 DEAD: DEAD/DEAH box h 99.9 4.2E-25 9.1E-30 198.1 20.0 168 134-331 1-168 (169)
109 TIGR00631 uvrb excinuclease AB 99.9 1.2E-23 2.6E-28 222.2 32.4 132 399-531 426-564 (655)
110 KOG0926 DEAH-box RNA helicase 99.9 6E-24 1.3E-28 214.2 21.6 320 135-520 259-704 (1172)
111 KOG0950 DNA polymerase theta/e 99.9 5.9E-24 1.3E-28 219.6 20.1 354 125-530 216-621 (1008)
112 COG0556 UvrB Helicase subunit 99.9 2.7E-23 5.7E-28 201.9 19.1 120 411-531 444-568 (663)
113 COG1110 Reverse gyrase [DNA re 99.9 1E-21 2.3E-26 204.2 30.7 295 129-491 80-416 (1187)
114 COG1203 CRISPR-associated heli 99.9 1.8E-22 3.9E-27 218.3 22.2 329 133-525 196-555 (733)
115 PRK05298 excinuclease ABC subu 99.9 2.8E-21 6E-26 206.2 30.8 139 401-540 432-586 (652)
116 PRK12900 secA preprotein trans 99.9 1.5E-21 3.3E-26 206.1 21.9 128 395-524 578-715 (1025)
117 COG4096 HsdR Type I site-speci 99.9 1.8E-21 3.9E-26 199.5 20.2 326 132-507 165-525 (875)
118 TIGR01407 dinG_rel DnaQ family 99.9 4.3E-20 9.2E-25 204.2 31.4 117 412-531 673-827 (850)
119 KOG1123 RNA polymerase II tran 99.9 3.9E-22 8.4E-27 191.7 12.8 330 130-528 300-661 (776)
120 KOG0385 Chromatin remodeling c 99.9 3.9E-21 8.5E-26 193.7 20.2 362 132-533 167-614 (971)
121 TIGR00348 hsdR type I site-spe 99.9 2.1E-20 4.6E-25 200.2 25.1 336 132-518 238-649 (667)
122 PRK12326 preprotein translocas 99.9 4.1E-19 8.8E-24 182.8 28.2 335 128-523 75-550 (764)
123 PRK13103 secA preprotein trans 99.8 1.6E-19 3.4E-24 190.4 24.0 364 129-523 80-594 (913)
124 KOG0949 Predicted helicase, DE 99.8 6E-20 1.3E-24 189.3 18.5 160 132-327 511-673 (1330)
125 smart00487 DEXDc DEAD-like hel 99.8 5.9E-19 1.3E-23 162.6 21.2 187 128-346 4-191 (201)
126 PRK14873 primosome assembly pr 99.8 3E-19 6.5E-24 188.4 19.3 148 152-335 165-313 (665)
127 KOG0387 Transcription-coupled 99.8 3.8E-18 8.1E-23 173.3 21.9 350 132-520 205-658 (923)
128 KOG0390 DNA repair protein, SN 99.8 2.7E-17 5.8E-22 171.4 25.7 351 132-516 238-701 (776)
129 KOG0384 Chromodomain-helicase 99.8 9.5E-19 2.1E-23 185.0 13.8 364 131-538 369-831 (1373)
130 PRK07246 bifunctional ATP-depe 99.8 3.6E-16 7.7E-21 170.6 31.5 119 411-532 645-797 (820)
131 cd00079 HELICc Helicase superf 99.8 6.6E-18 1.4E-22 144.4 14.1 118 399-516 12-131 (131)
132 KOG4150 Predicted ATP-dependen 99.8 1.6E-17 3.5E-22 162.4 16.5 359 125-546 279-668 (1034)
133 PF00271 Helicase_C: Helicase 99.8 1.7E-18 3.8E-23 133.0 7.7 78 431-508 1-78 (78)
134 CHL00122 secA preprotein trans 99.8 2.9E-16 6.4E-21 165.2 25.5 130 128-280 73-209 (870)
135 COG4889 Predicted helicase [Ge 99.7 3.1E-18 6.7E-23 174.7 9.4 340 129-507 158-572 (1518)
136 PRK12903 secA preprotein trans 99.7 8.2E-16 1.8E-20 160.9 24.6 357 129-522 76-541 (925)
137 PRK08074 bifunctional ATP-depe 99.7 4.8E-15 1E-19 164.9 31.9 121 412-532 751-907 (928)
138 KOG0953 Mitochondrial RNA heli 99.7 1.4E-16 3E-21 155.9 16.5 280 148-538 192-491 (700)
139 KOG1000 Chromatin remodeling p 99.7 4.5E-16 9.8E-21 150.2 19.4 341 132-534 198-619 (689)
140 KOG0389 SNF2 family DNA-depend 99.7 2E-16 4.3E-21 160.7 17.0 137 398-534 760-904 (941)
141 PRK12902 secA preprotein trans 99.7 3.9E-15 8.3E-20 156.5 25.5 129 129-280 83-218 (939)
142 KOG0392 SNF2 family DNA-depend 99.7 1.9E-15 4.1E-20 159.9 20.8 123 398-520 1309-1454(1549)
143 PF04851 ResIII: Type III rest 99.7 4.8E-16 1E-20 141.3 12.5 154 132-326 3-183 (184)
144 TIGR03117 cas_csf4 CRISPR-asso 99.7 8.9E-14 1.9E-18 145.2 30.4 116 402-520 460-616 (636)
145 cd00046 DEXDc DEAD-like helica 99.7 4.7E-15 1E-19 128.4 17.2 144 148-325 1-144 (144)
146 KOG0921 Dosage compensation co 99.6 7.9E-16 1.7E-20 157.8 10.3 346 133-520 379-774 (1282)
147 KOG1002 Nucleotide excision re 99.6 7.2E-14 1.6E-18 135.0 21.9 124 397-520 618-749 (791)
148 PRK11747 dinG ATP-dependent DN 99.6 9.2E-13 2E-17 142.2 32.3 123 403-531 526-687 (697)
149 smart00490 HELICc helicase sup 99.6 1.8E-15 4E-20 117.5 8.3 81 428-508 2-82 (82)
150 PF06862 DUF1253: Protein of u 99.6 1.7E-12 3.8E-17 128.9 26.9 313 189-529 35-424 (442)
151 TIGR02562 cas3_yersinia CRISPR 99.5 5.8E-13 1.3E-17 142.5 21.1 345 125-509 401-881 (1110)
152 COG1199 DinG Rad3-related DNA 99.5 2E-12 4.4E-17 140.7 25.9 131 402-536 469-635 (654)
153 PRK12901 secA preprotein trans 99.5 9.8E-13 2.1E-17 140.1 21.2 125 397-523 610-744 (1112)
154 TIGR00604 rad3 DNA repair heli 99.5 3.3E-12 7.1E-17 139.1 25.5 107 412-519 521-673 (705)
155 KOG0951 RNA helicase BRR2, DEA 99.5 4.1E-13 8.8E-18 142.8 17.2 320 133-529 1144-1503(1674)
156 KOG0386 Chromatin remodeling c 99.5 1.3E-13 2.7E-18 144.0 11.6 361 132-534 394-854 (1157)
157 KOG0388 SNF2 family DNA-depend 99.5 7.1E-12 1.5E-16 126.2 20.4 129 398-526 1027-1162(1185)
158 KOG4439 RNA polymerase II tran 99.4 3.9E-12 8.4E-17 128.3 13.5 120 411-530 744-869 (901)
159 KOG2340 Uncharacterized conser 99.4 3.3E-11 7.2E-16 117.9 17.5 380 130-528 214-676 (698)
160 PF07652 Flavi_DEAD: Flaviviru 99.3 2.4E-12 5.3E-17 106.5 5.5 138 146-330 3-141 (148)
161 COG0553 HepA Superfamily II DN 99.3 1.5E-10 3.3E-15 131.2 20.7 122 399-520 692-822 (866)
162 PF02399 Herpes_ori_bp: Origin 99.3 9.5E-10 2.1E-14 115.3 23.3 315 148-520 50-388 (824)
163 COG0653 SecA Preprotein transl 99.2 1.1E-09 2.5E-14 115.5 19.6 393 129-548 78-573 (822)
164 PF00176 SNF2_N: SNF2 family N 99.2 1.3E-10 2.9E-15 114.3 10.9 158 136-327 1-174 (299)
165 KOG1015 Transcription regulato 99.1 8E-09 1.7E-13 107.7 19.0 119 398-516 1125-1271(1567)
166 COG0610 Type I site-specific r 99.0 1.8E-08 3.9E-13 112.2 21.3 326 148-518 274-651 (962)
167 smart00488 DEXDc2 DEAD-like he 99.0 3.1E-09 6.7E-14 102.7 13.1 76 128-214 5-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.0 3.1E-09 6.7E-14 102.7 13.1 76 128-214 5-84 (289)
169 PF07517 SecA_DEAD: SecA DEAD- 98.8 1.8E-07 3.9E-12 87.9 13.9 131 127-280 73-210 (266)
170 PRK15483 type III restriction- 98.7 1.5E-07 3.2E-12 102.1 11.8 72 463-534 501-582 (986)
171 KOG0391 SNF2 family DNA-depend 98.5 1.3E-06 2.8E-11 93.6 12.2 124 397-520 1258-1387(1958)
172 COG3587 Restriction endonuclea 98.5 5.3E-06 1.1E-10 86.9 16.1 73 461-533 481-566 (985)
173 TIGR00596 rad1 DNA repair prot 98.5 4.1E-06 8.8E-11 91.0 15.9 51 245-295 9-59 (814)
174 PF13086 AAA_11: AAA domain; P 98.4 1.2E-06 2.6E-11 82.7 10.6 73 133-213 2-75 (236)
175 KOG0952 DNA/RNA helicase MER3/ 98.4 4E-08 8.6E-13 104.3 0.3 171 134-335 929-1102(1230)
176 KOG1016 Predicted DNA helicase 98.4 5.2E-05 1.1E-09 78.5 21.9 105 413-517 719-844 (1387)
177 KOG0391 SNF2 family DNA-depend 98.4 8.7E-07 1.9E-11 94.8 7.5 131 133-282 616-752 (1958)
178 PF02562 PhoH: PhoH-like prote 98.2 2.1E-06 4.6E-11 77.4 6.4 59 131-203 3-61 (205)
179 PF13307 Helicase_C_2: Helicas 98.2 4.3E-06 9.3E-11 74.0 7.9 106 412-519 8-149 (167)
180 PF13604 AAA_30: AAA domain; P 98.2 3.1E-06 6.7E-11 77.1 6.8 63 132-210 1-65 (196)
181 PF09848 DUF2075: Uncharacteri 98.2 7.7E-06 1.7E-10 82.0 10.2 108 149-294 3-117 (352)
182 KOG1001 Helicase-like transcri 98.0 3.2E-05 6.9E-10 82.4 11.4 117 397-513 520-641 (674)
183 PF13872 AAA_34: P-loop contai 98.0 4.7E-05 1E-09 71.9 11.2 181 105-332 17-227 (303)
184 PF13245 AAA_19: Part of AAA d 98.0 1.4E-05 3.1E-10 59.9 6.0 53 147-211 10-62 (76)
185 KOG1803 DNA helicase [Replicat 98.0 1.4E-05 3E-10 81.1 7.2 65 132-212 185-250 (649)
186 PF12340 DUF3638: Protein of u 98.0 9.4E-05 2E-09 67.4 11.4 128 111-257 4-144 (229)
187 PRK10536 hypothetical protein; 97.9 0.00033 7.1E-09 65.2 14.4 44 129-172 56-99 (262)
188 KOG1132 Helicase of the DEAD s 97.9 4.1E-05 8.8E-10 80.9 9.0 107 413-520 561-722 (945)
189 TIGR01448 recD_rel helicase, p 97.8 0.00024 5.3E-09 77.6 13.0 66 126-208 318-385 (720)
190 PF13401 AAA_22: AAA domain; P 97.7 0.00079 1.7E-08 56.9 12.0 61 147-217 4-64 (131)
191 PRK10875 recD exonuclease V su 97.6 0.0011 2.4E-08 70.6 14.9 70 133-214 153-222 (615)
192 TIGR02768 TraA_Ti Ti-type conj 97.6 0.0011 2.3E-08 72.9 14.5 64 128-208 349-413 (744)
193 TIGR01447 recD exodeoxyribonuc 97.6 0.00056 1.2E-08 72.6 11.6 70 134-214 147-216 (586)
194 PRK13889 conjugal transfer rel 97.5 0.0011 2.4E-08 73.9 13.0 65 126-207 341-406 (988)
195 PRK13826 Dtr system oriT relax 97.4 0.0019 4.1E-08 72.6 13.8 74 117-207 367-441 (1102)
196 PRK14974 cell division protein 97.4 0.0018 3.9E-08 63.6 12.0 54 267-337 222-276 (336)
197 PF14617 CMS1: U3-containing 9 97.4 0.00061 1.3E-08 63.5 7.8 89 189-278 124-212 (252)
198 PRK04296 thymidine kinase; Pro 97.4 0.0005 1.1E-08 62.3 6.9 36 148-199 3-38 (190)
199 PF00580 UvrD-helicase: UvrD/R 97.3 0.00051 1.1E-08 67.9 7.5 138 133-293 1-140 (315)
200 PF05970 PIF1: PIF1-like helic 97.3 0.00082 1.8E-08 67.6 8.7 121 133-296 2-130 (364)
201 smart00492 HELICc3 helicase su 97.3 0.0022 4.7E-08 54.7 9.8 67 426-492 4-79 (141)
202 smart00491 HELICc2 helicase su 97.3 0.002 4.4E-08 55.0 9.0 93 426-518 4-137 (142)
203 TIGR00376 DNA helicase, putati 97.2 0.00079 1.7E-08 72.5 7.9 66 132-213 157-223 (637)
204 PF00448 SRP54: SRP54-type pro 97.2 0.0032 7E-08 57.1 10.6 131 149-336 3-136 (196)
205 COG1875 NYN ribonuclease and A 97.2 0.0015 3.3E-08 62.7 8.7 65 127-204 223-289 (436)
206 cd00009 AAA The AAA+ (ATPases 97.2 0.005 1.1E-07 52.8 11.4 22 147-168 19-40 (151)
207 PRK12723 flagellar biosynthesi 97.2 0.0059 1.3E-07 61.3 12.5 24 148-171 175-198 (388)
208 KOG1802 RNA helicase nonsense 97.1 0.00083 1.8E-08 69.0 6.1 75 125-214 403-477 (935)
209 KOG1805 DNA replication helica 97.1 0.0025 5.4E-08 68.5 9.6 149 103-280 644-809 (1100)
210 PRK06526 transposase; Provisio 97.1 0.0028 6.1E-08 60.0 9.1 32 141-172 92-123 (254)
211 PRK11889 flhF flagellar biosyn 97.0 0.012 2.5E-07 58.4 12.5 25 148-172 242-266 (436)
212 cd01120 RecA-like_NTPases RecA 96.8 0.024 5.2E-07 49.7 12.4 38 150-203 2-39 (165)
213 smart00382 AAA ATPases associa 96.8 0.0022 4.7E-08 54.7 5.5 24 147-170 2-25 (148)
214 PRK08181 transposase; Validate 96.8 0.0075 1.6E-07 57.5 9.4 39 134-172 89-131 (269)
215 PRK11054 helD DNA helicase IV; 96.8 0.01 2.2E-07 64.4 11.2 72 131-216 195-266 (684)
216 PRK06893 DNA replication initi 96.7 0.01 2.2E-07 55.5 9.6 48 266-329 90-138 (229)
217 cd01124 KaiC KaiC is a circadi 96.7 0.012 2.6E-07 53.2 9.8 48 150-214 2-49 (187)
218 KOG0298 DEAD box-containing he 96.7 0.0047 1E-07 68.3 8.0 160 147-331 374-556 (1394)
219 PRK10919 ATP-dependent DNA hel 96.7 0.0056 1.2E-07 66.8 8.7 71 132-216 2-72 (672)
220 PF13871 Helicase_C_4: Helicas 96.6 0.0093 2E-07 56.4 8.3 77 454-530 52-140 (278)
221 PRK07952 DNA replication prote 96.6 0.029 6.4E-07 52.6 11.4 24 148-171 100-123 (244)
222 PF05127 Helicase_RecD: Helica 96.5 0.0052 1.1E-07 54.1 5.7 124 151-326 1-124 (177)
223 PRK08084 DNA replication initi 96.5 0.022 4.7E-07 53.6 10.3 21 148-168 46-66 (235)
224 PRK08727 hypothetical protein; 96.5 0.017 3.6E-07 54.2 9.2 21 148-168 42-62 (233)
225 COG3421 Uncharacterized protei 96.4 0.0025 5.4E-08 64.9 3.6 115 152-281 2-126 (812)
226 PRK14722 flhF flagellar biosyn 96.4 0.023 4.9E-07 56.6 10.3 26 147-172 137-162 (374)
227 PRK00771 signal recognition pa 96.4 0.035 7.6E-07 56.7 11.7 24 148-171 96-119 (437)
228 PRK12377 putative replication 96.3 0.056 1.2E-06 50.9 11.9 25 148-172 102-126 (248)
229 cd01122 GP4d_helicase GP4d_hel 96.3 0.029 6.3E-07 54.1 10.4 57 142-214 25-81 (271)
230 TIGR02760 TraI_TIGR conjugativ 96.3 0.033 7.1E-07 67.6 12.8 63 132-210 429-493 (1960)
231 TIGR01075 uvrD DNA helicase II 96.3 0.012 2.6E-07 65.0 8.5 71 132-216 4-74 (715)
232 PRK11773 uvrD DNA-dependent he 96.3 0.012 2.6E-07 65.0 8.4 71 132-216 9-79 (721)
233 PRK05642 DNA replication initi 96.3 0.033 7.2E-07 52.2 9.9 29 267-295 97-126 (234)
234 PTZ00112 origin recognition co 96.2 0.09 1.9E-06 57.3 13.6 34 134-167 760-801 (1164)
235 COG1435 Tdk Thymidine kinase [ 96.2 0.07 1.5E-06 47.2 10.7 105 148-295 5-109 (201)
236 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.053 1.2E-06 50.6 10.8 24 147-170 38-61 (226)
237 PF00308 Bac_DnaA: Bacterial d 96.1 0.0083 1.8E-07 55.6 5.1 48 265-328 95-143 (219)
238 PRK05703 flhF flagellar biosyn 96.1 0.12 2.6E-06 53.0 13.9 25 147-171 221-245 (424)
239 PRK08903 DnaA regulatory inact 96.1 0.037 7.9E-07 51.8 9.5 24 147-170 42-65 (227)
240 KOG0989 Replication factor C, 96.1 0.029 6.3E-07 53.0 8.4 25 148-172 58-82 (346)
241 KOG1131 RNA polymerase II tran 96.1 0.059 1.3E-06 54.3 11.0 103 414-518 531-678 (755)
242 PF05621 TniB: Bacterial TniB 96.0 0.066 1.4E-06 51.2 10.3 60 148-216 62-121 (302)
243 COG2256 MGS1 ATPase related to 96.0 0.039 8.4E-07 54.2 8.8 21 148-168 49-69 (436)
244 PRK06921 hypothetical protein; 95.9 0.097 2.1E-06 50.0 11.6 25 147-172 117-141 (266)
245 PRK11823 DNA repair protein Ra 95.9 0.13 2.8E-06 53.2 13.1 50 147-213 80-129 (446)
246 COG2805 PilT Tfp pilus assembl 95.9 0.012 2.6E-07 55.4 5.0 53 102-173 98-150 (353)
247 PHA02533 17 large terminase pr 95.9 0.084 1.8E-06 55.6 11.8 74 129-217 57-130 (534)
248 PRK06731 flhF flagellar biosyn 95.9 0.16 3.4E-06 48.5 12.6 130 147-337 75-209 (270)
249 TIGR02782 TrbB_P P-type conjug 95.8 0.12 2.7E-06 50.3 12.1 63 125-203 111-174 (299)
250 cd01121 Sms Sms (bacterial rad 95.8 0.17 3.6E-06 50.9 13.1 50 147-213 82-131 (372)
251 TIGR00064 ftsY signal recognit 95.8 0.21 4.5E-06 48.0 13.3 139 148-337 73-214 (272)
252 PF03354 Terminase_1: Phage Te 95.8 0.03 6.5E-07 58.7 8.0 73 135-219 1-82 (477)
253 PRK08116 hypothetical protein; 95.7 0.056 1.2E-06 51.8 9.0 24 148-172 115-138 (268)
254 TIGR03015 pepcterm_ATPase puta 95.7 0.15 3.3E-06 49.0 12.2 36 132-167 23-63 (269)
255 PRK00149 dnaA chromosomal repl 95.7 0.095 2.1E-06 54.6 11.4 24 148-172 149-172 (450)
256 PRK12724 flagellar biosynthesi 95.7 0.21 4.5E-06 50.4 13.1 24 148-171 224-247 (432)
257 COG0552 FtsY Signal recognitio 95.7 0.28 6E-06 47.4 13.1 138 149-337 141-281 (340)
258 COG4962 CpaF Flp pilus assembl 95.6 0.021 4.6E-07 55.0 5.7 62 129-207 154-216 (355)
259 TIGR01425 SRP54_euk signal rec 95.6 0.16 3.5E-06 51.6 12.2 50 149-214 102-153 (429)
260 PRK14956 DNA polymerase III su 95.6 0.052 1.1E-06 55.7 8.5 22 149-170 42-63 (484)
261 TIGR01074 rep ATP-dependent DN 95.6 0.044 9.6E-07 60.2 8.8 71 133-217 2-72 (664)
262 PRK14087 dnaA chromosomal repl 95.6 0.056 1.2E-06 55.9 8.9 49 148-211 142-190 (450)
263 PRK10416 signal recognition pa 95.6 0.31 6.8E-06 47.8 13.6 60 266-336 195-255 (318)
264 PRK12422 chromosomal replicati 95.5 0.062 1.4E-06 55.4 9.0 24 148-172 142-165 (445)
265 TIGR02785 addA_Gpos recombinat 95.5 0.054 1.2E-06 63.4 9.5 123 133-278 2-126 (1232)
266 PRK05986 cob(I)alamin adenolsy 95.4 0.085 1.9E-06 47.1 8.4 140 145-335 20-168 (191)
267 PRK14712 conjugal transfer nic 95.4 0.095 2.1E-06 61.4 11.0 64 132-207 835-900 (1623)
268 TIGR02881 spore_V_K stage V sp 95.4 0.19 4.1E-06 48.1 11.3 21 148-168 43-63 (261)
269 cd00561 CobA_CobO_BtuR ATP:cor 95.3 0.18 3.8E-06 43.8 9.8 54 265-335 93-148 (159)
270 PRK07003 DNA polymerase III su 95.3 0.086 1.9E-06 56.8 9.4 22 149-170 40-61 (830)
271 PF05496 RuvB_N: Holliday junc 95.3 0.059 1.3E-06 49.2 6.9 21 148-168 51-71 (233)
272 PF00004 AAA: ATPase family as 95.3 0.46 1E-05 39.7 12.3 18 150-167 1-18 (132)
273 PHA03333 putative ATPase subun 95.2 0.29 6.3E-06 52.0 12.7 69 133-216 170-241 (752)
274 PRK05707 DNA polymerase III su 95.2 0.072 1.6E-06 52.6 8.0 40 133-172 4-47 (328)
275 PLN03025 replication factor C 95.2 0.23 5.1E-06 49.0 11.7 23 148-170 35-57 (319)
276 TIGR01073 pcrA ATP-dependent D 95.2 0.083 1.8E-06 58.6 9.3 72 132-217 4-75 (726)
277 PRK13900 type IV secretion sys 95.2 0.23 4.9E-06 49.1 11.4 29 143-172 156-184 (332)
278 TIGR02880 cbbX_cfxQ probable R 95.2 0.33 7.2E-06 47.0 12.3 21 147-167 58-78 (284)
279 KOG0701 dsRNA-specific nucleas 95.1 0.01 2.2E-07 68.4 2.1 94 414-507 293-398 (1606)
280 COG1444 Predicted P-loop ATPas 95.1 0.13 2.8E-06 55.4 10.1 148 125-326 207-357 (758)
281 TIGR00362 DnaA chromosomal rep 95.1 0.17 3.6E-06 52.0 10.7 24 148-172 137-160 (405)
282 PRK14958 DNA polymerase III su 95.1 0.11 2.4E-06 54.5 9.5 22 149-170 40-61 (509)
283 cd00984 DnaB_C DnaB helicase C 95.1 0.33 7.1E-06 45.8 12.0 40 145-199 11-50 (242)
284 CHL00181 cbbX CbbX; Provisiona 95.0 0.32 7E-06 47.1 11.8 24 147-170 59-82 (287)
285 PRK14964 DNA polymerase III su 95.0 0.2 4.3E-06 52.0 10.7 22 148-169 36-57 (491)
286 PRK13851 type IV secretion sys 95.0 0.16 3.5E-06 50.3 9.6 45 143-204 158-202 (344)
287 PRK13709 conjugal transfer nic 94.9 0.23 5.1E-06 59.1 12.3 64 132-207 967-1032(1747)
288 PRK10867 signal recognition pa 94.9 0.4 8.6E-06 49.1 12.4 24 149-172 102-125 (433)
289 PF05876 Terminase_GpA: Phage 94.9 0.03 6.5E-07 59.5 4.6 124 132-279 16-146 (557)
290 PRK12402 replication factor C 94.8 0.17 3.6E-06 50.5 9.7 21 149-169 38-58 (337)
291 PRK14873 primosome assembly pr 94.8 0.14 2.9E-06 55.5 9.3 91 398-489 171-265 (665)
292 PRK00411 cdc6 cell division co 94.8 0.21 4.5E-06 51.1 10.5 21 148-168 56-76 (394)
293 PRK13833 conjugal transfer pro 94.8 0.21 4.5E-06 49.0 9.8 63 125-203 123-186 (323)
294 PRK11331 5-methylcytosine-spec 94.8 0.19 4.1E-06 51.2 9.7 37 132-168 179-215 (459)
295 TIGR00595 priA primosomal prot 94.8 0.17 3.6E-06 53.3 9.8 75 412-487 24-99 (505)
296 TIGR00708 cobA cob(I)alamin ad 94.7 0.15 3.2E-06 44.9 7.7 53 266-335 96-150 (173)
297 PRK14088 dnaA chromosomal repl 94.7 0.38 8.3E-06 49.7 12.1 24 148-172 131-154 (440)
298 PRK14960 DNA polymerase III su 94.7 0.12 2.6E-06 55.0 8.3 23 148-170 38-60 (702)
299 PRK13894 conjugal transfer ATP 94.7 0.31 6.8E-06 47.8 10.8 64 124-203 126-190 (319)
300 PRK06904 replicative DNA helic 94.6 0.63 1.4E-05 48.5 13.5 153 140-323 214-382 (472)
301 PRK14086 dnaA chromosomal repl 94.6 0.25 5.4E-06 52.4 10.5 31 265-295 375-406 (617)
302 PF13173 AAA_14: AAA domain 94.6 0.31 6.8E-06 40.8 9.4 25 268-294 62-86 (128)
303 COG1198 PriA Primosomal protei 94.6 0.11 2.4E-06 56.1 8.1 89 397-486 227-318 (730)
304 PRK05580 primosome assembly pr 94.6 0.2 4.4E-06 54.8 10.3 77 412-489 189-266 (679)
305 PRK12726 flagellar biosynthesi 94.6 0.22 4.7E-06 49.5 9.3 26 147-172 206-231 (407)
306 PRK05973 replicative DNA helic 94.6 0.068 1.5E-06 49.8 5.6 64 133-214 51-114 (237)
307 PRK14962 DNA polymerase III su 94.5 0.24 5.3E-06 51.4 10.1 22 149-170 38-59 (472)
308 PRK10917 ATP-dependent DNA hel 94.5 0.12 2.7E-06 56.6 8.4 75 412-486 309-388 (681)
309 PRK07764 DNA polymerase III su 94.5 0.13 2.8E-06 57.1 8.5 24 148-171 38-61 (824)
310 PHA02544 44 clamp loader, smal 94.5 0.21 4.6E-06 49.3 9.4 28 267-294 100-127 (316)
311 TIGR02760 TraI_TIGR conjugativ 94.4 0.11 2.4E-06 63.2 8.4 61 132-207 1019-1084(1960)
312 COG1222 RPT1 ATP-dependent 26S 94.4 1.1 2.3E-05 43.8 13.2 56 106-164 144-202 (406)
313 COG1419 FlhF Flagellar GTP-bin 94.4 0.21 4.5E-06 49.7 8.7 123 147-329 203-327 (407)
314 COG0593 DnaA ATPase involved i 94.4 0.25 5.4E-06 49.7 9.4 48 267-330 175-223 (408)
315 KOG0733 Nuclear AAA ATPase (VC 94.4 0.69 1.5E-05 48.2 12.4 57 107-166 505-564 (802)
316 TIGR00959 ffh signal recogniti 94.4 0.69 1.5E-05 47.3 12.7 23 149-171 101-123 (428)
317 PRK04195 replication factor C 94.3 0.22 4.7E-06 52.3 9.5 21 147-167 39-59 (482)
318 PRK08691 DNA polymerase III su 94.3 0.23 4.9E-06 53.4 9.5 23 148-170 39-61 (709)
319 PRK14723 flhF flagellar biosyn 94.3 0.27 5.9E-06 53.5 10.2 24 148-171 186-209 (767)
320 KOG0739 AAA+-type ATPase [Post 94.3 0.84 1.8E-05 43.2 11.8 123 141-334 155-286 (439)
321 TIGR03600 phage_DnaB phage rep 94.3 0.48 1E-05 48.9 11.7 163 129-324 176-353 (421)
322 TIGR03877 thermo_KaiC_1 KaiC d 94.3 0.067 1.4E-06 50.4 5.0 50 147-213 21-70 (237)
323 PF00437 T2SE: Type II/IV secr 94.2 0.16 3.6E-06 48.8 7.7 52 136-203 115-167 (270)
324 cd03115 SRP The signal recogni 94.2 0.9 1.9E-05 40.3 12.0 23 150-172 3-25 (173)
325 PRK06645 DNA polymerase III su 94.2 0.66 1.4E-05 48.6 12.4 23 148-170 44-66 (507)
326 KOG0991 Replication factor C, 94.2 0.1 2.3E-06 47.3 5.5 25 148-172 49-73 (333)
327 COG2804 PulE Type II secretory 94.1 0.11 2.3E-06 53.1 6.2 44 125-172 237-282 (500)
328 PRK07414 cob(I)yrinic acid a,c 94.1 0.46 1E-05 41.8 9.3 136 150-334 24-167 (178)
329 PRK14961 DNA polymerase III su 94.1 0.17 3.7E-06 51.0 7.7 21 149-169 40-60 (363)
330 PRK08506 replicative DNA helic 94.0 0.71 1.5E-05 48.2 12.4 115 144-280 189-315 (472)
331 PHA03368 DNA packaging termina 94.0 0.37 8E-06 51.0 10.0 136 147-326 254-391 (738)
332 PRK09111 DNA polymerase III su 94.0 0.28 6.2E-06 52.4 9.5 23 148-170 47-69 (598)
333 PF01695 IstB_IS21: IstB-like 94.0 0.075 1.6E-06 47.4 4.4 33 140-172 40-72 (178)
334 PRK12323 DNA polymerase III su 93.9 0.54 1.2E-05 50.1 11.1 23 149-171 40-62 (700)
335 PRK13342 recombination factor 93.9 0.25 5.4E-06 50.8 8.8 20 148-167 37-56 (413)
336 KOG0344 ATP-dependent RNA heli 93.9 0.48 1E-05 48.8 10.4 100 155-278 365-467 (593)
337 PRK14957 DNA polymerase III su 93.9 0.23 5.1E-06 52.3 8.5 22 149-170 40-61 (546)
338 COG1110 Reverse gyrase [DNA re 93.9 0.19 4.1E-06 55.1 7.9 68 406-473 118-191 (1187)
339 COG1474 CDC6 Cdc6-related prot 93.8 0.97 2.1E-05 45.4 12.4 24 148-172 43-66 (366)
340 KOG2028 ATPase related to the 93.8 0.16 3.5E-06 49.2 6.4 49 148-212 163-211 (554)
341 KOG1133 Helicase of the DEAD s 93.8 0.072 1.6E-06 55.7 4.4 103 413-518 629-778 (821)
342 PRK05563 DNA polymerase III su 93.8 0.33 7.1E-06 51.8 9.5 23 148-170 39-61 (559)
343 TIGR00416 sms DNA repair prote 93.8 0.78 1.7E-05 47.6 12.0 50 147-213 94-143 (454)
344 PRK07994 DNA polymerase III su 93.8 0.36 7.8E-06 51.9 9.7 21 150-170 41-61 (647)
345 PRK06620 hypothetical protein; 93.7 0.17 3.8E-06 46.6 6.4 18 148-165 45-62 (214)
346 PRK14959 DNA polymerase III su 93.7 0.49 1.1E-05 50.4 10.4 23 148-170 39-61 (624)
347 KOG0745 Putative ATP-dependent 93.7 0.12 2.6E-06 51.2 5.4 20 148-167 227-246 (564)
348 COG1200 RecG RecG-like helicas 93.6 0.25 5.3E-06 52.2 7.9 76 411-486 309-389 (677)
349 PF02572 CobA_CobO_BtuR: ATP:c 93.6 0.75 1.6E-05 40.5 9.8 140 150-335 6-149 (172)
350 PRK08840 replicative DNA helic 93.6 1.2 2.7E-05 46.2 13.1 70 129-214 199-268 (464)
351 TIGR02524 dot_icm_DotB Dot/Icm 93.6 0.16 3.5E-06 50.7 6.3 26 146-172 133-158 (358)
352 PRK14949 DNA polymerase III su 93.5 0.42 9.2E-06 52.7 9.8 22 149-170 40-61 (944)
353 TIGR03499 FlhF flagellar biosy 93.5 0.11 2.5E-06 50.1 5.1 25 148-172 195-219 (282)
354 PRK08006 replicative DNA helic 93.5 1.4 3.1E-05 45.9 13.3 153 141-324 218-385 (471)
355 PRK06995 flhF flagellar biosyn 93.4 0.77 1.7E-05 47.6 11.1 90 147-255 256-347 (484)
356 PRK14952 DNA polymerase III su 93.4 0.31 6.7E-06 51.9 8.5 22 149-170 37-58 (584)
357 PRK13341 recombination factor 93.4 0.54 1.2E-05 51.6 10.5 21 148-168 53-73 (725)
358 PF06745 KaiC: KaiC; InterPro 93.4 0.071 1.5E-06 49.8 3.4 51 147-214 19-70 (226)
359 PRK14951 DNA polymerase III su 93.3 0.73 1.6E-05 49.4 11.1 22 149-170 40-61 (618)
360 PRK14969 DNA polymerase III su 93.3 0.34 7.3E-06 51.3 8.6 22 149-170 40-61 (527)
361 COG3972 Superfamily I DNA and 93.3 0.35 7.5E-06 48.9 7.9 144 132-291 162-318 (660)
362 PF03969 AFG1_ATPase: AFG1-lik 93.2 2.2 4.7E-05 42.8 13.7 46 267-329 127-172 (362)
363 COG2909 MalT ATP-dependent tra 93.2 0.48 1E-05 51.3 9.4 45 265-326 127-171 (894)
364 COG1484 DnaC DNA replication p 93.2 0.15 3.2E-06 48.4 5.2 50 146-212 104-153 (254)
365 PRK05896 DNA polymerase III su 93.1 0.66 1.4E-05 49.2 10.3 23 148-170 39-61 (605)
366 PHA00012 I assembly protein 93.1 0.85 1.8E-05 44.1 10.0 24 149-172 3-26 (361)
367 cd01129 PulE-GspE PulE/GspE Th 93.1 0.26 5.6E-06 47.1 6.8 44 125-172 59-104 (264)
368 COG1223 Predicted ATPase (AAA+ 93.1 2 4.4E-05 39.9 11.9 18 148-165 152-169 (368)
369 PRK08769 DNA polymerase III su 93.1 1.1 2.4E-05 44.0 11.1 42 131-172 3-51 (319)
370 COG3973 Superfamily I DNA and 93.0 0.28 6E-06 50.8 7.1 70 134-214 214-283 (747)
371 PRK06835 DNA replication prote 93.0 0.26 5.7E-06 48.6 6.8 26 147-172 183-208 (329)
372 TIGR00643 recG ATP-dependent D 93.0 0.26 5.6E-06 53.6 7.4 75 412-486 283-362 (630)
373 TIGR02525 plasmid_TraJ plasmid 92.9 0.26 5.6E-06 49.4 6.6 25 147-172 149-173 (372)
374 COG1221 PspF Transcriptional r 92.9 0.35 7.6E-06 48.5 7.4 23 145-167 99-121 (403)
375 PF03796 DnaB_C: DnaB-like hel 92.8 0.84 1.8E-05 43.6 10.0 149 145-325 17-180 (259)
376 COG3267 ExeA Type II secretory 92.8 1.2 2.7E-05 41.3 10.3 29 143-172 46-75 (269)
377 PRK14955 DNA polymerase III su 92.8 0.87 1.9E-05 46.5 10.5 24 148-171 39-62 (397)
378 PRK14953 DNA polymerase III su 92.8 0.6 1.3E-05 48.8 9.4 43 501-543 407-449 (486)
379 cd01130 VirB11-like_ATPase Typ 92.8 0.32 6.9E-06 43.8 6.5 39 133-172 10-49 (186)
380 PRK13764 ATPase; Provisional 92.7 0.85 1.8E-05 48.6 10.5 26 146-172 256-281 (602)
381 PRK14950 DNA polymerase III su 92.7 0.97 2.1E-05 48.7 11.1 21 148-168 39-59 (585)
382 COG4626 Phage terminase-like p 92.7 1.2 2.5E-05 46.2 10.9 75 129-216 59-143 (546)
383 PHA02542 41 41 helicase; Provi 92.6 0.96 2.1E-05 47.1 10.6 156 140-325 178-354 (473)
384 PRK14721 flhF flagellar biosyn 92.6 1.6 3.5E-05 44.4 11.9 23 147-169 191-213 (420)
385 COG4185 Uncharacterized protei 92.6 0.4 8.7E-06 40.9 6.2 22 150-171 5-26 (187)
386 TIGR02533 type_II_gspE general 92.5 0.27 5.9E-06 51.3 6.5 44 125-172 221-266 (486)
387 PRK07133 DNA polymerase III su 92.5 0.73 1.6E-05 50.0 9.7 23 148-170 41-63 (725)
388 PRK11034 clpA ATP-dependent Cl 92.4 1.7 3.6E-05 48.1 12.6 23 147-169 207-229 (758)
389 PRK00440 rfc replication facto 92.4 1.6 3.5E-05 43.0 11.7 20 149-168 40-59 (319)
390 TIGR02639 ClpA ATP-dependent C 92.4 2.3 4.9E-05 47.3 13.8 23 148-170 204-226 (731)
391 PRK06871 DNA polymerase III su 92.4 0.53 1.2E-05 46.2 7.9 39 134-172 4-49 (325)
392 COG2109 BtuR ATP:corrinoid ade 92.3 2.1 4.5E-05 37.9 10.5 35 150-200 31-65 (198)
393 PF13177 DNA_pol3_delta2: DNA 92.3 1.8 3.9E-05 37.9 10.6 25 148-172 20-44 (162)
394 PRK10689 transcription-repair 92.3 0.34 7.5E-06 55.9 7.5 80 190-278 808-890 (1147)
395 COG0630 VirB11 Type IV secreto 92.3 0.87 1.9E-05 44.6 9.3 40 132-172 127-167 (312)
396 PRK03992 proteasome-activating 92.3 1.3 2.9E-05 45.0 11.1 19 148-166 166-184 (389)
397 PRK04328 hypothetical protein; 92.3 0.21 4.6E-06 47.3 4.9 52 146-214 22-73 (249)
398 cd01393 recA_like RecA is a b 92.2 0.45 9.7E-06 44.3 7.1 26 147-172 19-44 (226)
399 TIGR00678 holB DNA polymerase 92.2 1 2.2E-05 40.6 9.2 25 148-172 15-39 (188)
400 PRK14965 DNA polymerase III su 92.2 1.2 2.6E-05 47.8 11.1 22 149-170 40-61 (576)
401 PRK08533 flagellar accessory p 92.2 0.26 5.6E-06 46.1 5.3 53 144-213 21-73 (230)
402 COG1219 ClpX ATP-dependent pro 92.1 0.11 2.4E-06 49.4 2.7 22 147-168 97-118 (408)
403 PHA00350 putative assembly pro 92.1 1.4 3E-05 44.4 10.6 24 149-172 3-27 (399)
404 COG4098 comFA Superfamily II D 92.1 2.9 6.4E-05 40.4 12.0 119 189-330 303-421 (441)
405 TIGR01547 phage_term_2 phage t 92.1 0.43 9.3E-06 48.8 7.3 57 149-218 3-60 (396)
406 COG1197 Mfd Transcription-repa 92.0 0.37 8E-06 54.1 7.0 164 105-282 707-887 (1139)
407 TIGR00580 mfd transcription-re 92.0 0.49 1.1E-05 53.4 8.1 75 412-486 499-578 (926)
408 PRK10436 hypothetical protein; 92.0 0.33 7.1E-06 50.2 6.3 44 125-172 197-242 (462)
409 PF05729 NACHT: NACHT domain 92.0 0.94 2E-05 39.5 8.6 23 149-171 2-24 (166)
410 PRK12727 flagellar biosynthesi 92.0 0.44 9.5E-06 49.6 7.0 26 146-171 349-374 (559)
411 PRK06964 DNA polymerase III su 91.9 1.8 3.8E-05 43.0 11.0 38 134-171 3-45 (342)
412 PRK07004 replicative DNA helic 91.9 1.3 2.7E-05 46.2 10.4 148 144-324 210-373 (460)
413 PRK09183 transposase/IS protei 91.8 0.2 4.4E-06 47.7 4.2 30 143-172 98-127 (259)
414 TIGR01241 FtsH_fam ATP-depende 91.8 1.8 3.8E-05 45.8 11.7 18 148-165 89-106 (495)
415 COG0542 clpA ATP-binding subun 91.8 1.4 3.1E-05 48.0 10.8 109 136-296 495-618 (786)
416 PRK08699 DNA polymerase III su 91.8 2.1 4.5E-05 42.3 11.3 38 134-171 3-45 (325)
417 TIGR00665 DnaB replicative DNA 91.7 2.2 4.7E-05 44.3 12.1 55 144-214 192-246 (434)
418 PRK08760 replicative DNA helic 91.7 3 6.4E-05 43.6 13.0 114 145-280 227-352 (476)
419 PRK05748 replicative DNA helic 91.7 2 4.4E-05 44.7 11.8 149 144-325 200-365 (448)
420 PRK14963 DNA polymerase III su 91.6 0.49 1.1E-05 49.7 7.1 21 149-169 38-58 (504)
421 TIGR03345 VI_ClpV1 type VI sec 91.4 0.87 1.9E-05 51.2 9.2 19 150-168 599-617 (852)
422 CHL00176 ftsH cell division pr 91.4 1.6 3.5E-05 47.2 10.9 20 148-167 217-236 (638)
423 PF12846 AAA_10: AAA-like doma 91.4 0.26 5.7E-06 48.1 4.7 42 148-205 2-43 (304)
424 PRK07993 DNA polymerase III su 91.4 0.36 7.8E-06 47.8 5.6 39 133-171 3-48 (334)
425 PF01637 Arch_ATPase: Archaeal 91.4 0.68 1.5E-05 43.1 7.4 25 147-172 20-44 (234)
426 TIGR02928 orc1/cdc6 family rep 91.3 0.47 1E-05 47.9 6.6 24 148-172 41-64 (365)
427 TIGR01420 pilT_fam pilus retra 91.3 0.61 1.3E-05 46.6 7.2 25 147-172 122-146 (343)
428 TIGR03878 thermo_KaiC_2 KaiC d 91.3 0.22 4.8E-06 47.5 3.9 38 146-199 35-72 (259)
429 PHA00729 NTP-binding motif con 91.3 1.4 3.1E-05 40.5 8.9 20 149-168 19-38 (226)
430 COG0470 HolB ATPase involved i 91.1 1.7 3.7E-05 42.9 10.3 26 147-172 23-49 (325)
431 TIGR03819 heli_sec_ATPase heli 91.0 2.1 4.5E-05 42.6 10.6 48 122-172 154-202 (340)
432 PRK14954 DNA polymerase III su 90.9 1.3 2.9E-05 47.5 9.7 23 148-170 39-61 (620)
433 PRK14948 DNA polymerase III su 90.9 1.4 3.1E-05 47.5 10.0 24 148-171 39-62 (620)
434 PF02606 LpxK: Tetraacyldisacc 90.9 9.3 0.0002 37.7 14.8 57 412-471 226-287 (326)
435 PRK14971 DNA polymerase III su 90.7 1.1 2.5E-05 48.2 9.0 23 148-170 40-62 (614)
436 PF06733 DEAD_2: DEAD_2; Inte 90.7 0.14 3E-06 45.6 1.8 38 243-281 119-159 (174)
437 TIGR02538 type_IV_pilB type IV 90.7 0.5 1.1E-05 50.5 6.3 44 125-172 295-340 (564)
438 TIGR02788 VirB11 P-type DNA tr 90.5 0.45 9.8E-06 46.7 5.4 28 144-172 141-168 (308)
439 PRK05800 cobU adenosylcobinami 90.4 3.9 8.4E-05 36.1 10.7 22 148-169 2-23 (170)
440 PRK09112 DNA polymerase III su 90.4 1.9 4.1E-05 43.1 9.7 23 149-171 47-69 (351)
441 PRK05595 replicative DNA helic 90.4 1.5 3.3E-05 45.5 9.4 54 145-214 199-252 (444)
442 TIGR02655 circ_KaiC circadian 90.4 0.38 8.2E-06 50.5 4.9 59 139-214 250-313 (484)
443 KOG0729 26S proteasome regulat 90.3 6.5 0.00014 36.7 12.0 55 107-165 171-229 (435)
444 PRK13695 putative NTPase; Prov 90.2 2.7 5.8E-05 37.3 9.7 20 148-167 1-20 (174)
445 PRK06647 DNA polymerase III su 90.2 1.7 3.7E-05 46.4 9.7 23 148-170 39-61 (563)
446 PRK09165 replicative DNA helic 90.2 5.5 0.00012 42.0 13.4 128 147-280 217-354 (497)
447 COG2874 FlaH Predicted ATPases 90.2 5.7 0.00012 36.0 11.3 44 148-207 29-75 (235)
448 PF01443 Viral_helicase1: Vira 90.2 0.17 3.7E-06 47.5 2.0 15 150-164 1-15 (234)
449 PF10593 Z1: Z1 domain; Inter 90.1 1 2.2E-05 42.2 7.1 87 437-528 110-201 (239)
450 TIGR01243 CDC48 AAA family ATP 90.1 3.4 7.3E-05 46.1 12.4 21 147-167 487-507 (733)
451 COG0467 RAD55 RecA-superfamily 90.1 0.51 1.1E-05 45.1 5.3 51 146-213 22-72 (260)
452 TIGR02237 recomb_radB DNA repa 90.0 0.37 8E-06 44.3 4.1 38 147-200 12-49 (209)
453 TIGR02858 spore_III_AA stage I 90.0 3.3 7.1E-05 39.6 10.5 24 148-172 112-135 (270)
454 cd01131 PilT Pilus retraction 90.0 0.41 9E-06 43.6 4.3 22 150-172 4-25 (198)
455 PRK07940 DNA polymerase III su 90.0 1.2 2.7E-05 45.1 8.1 23 148-170 37-59 (394)
456 COG1066 Sms Predicted ATP-depe 89.9 2.1 4.5E-05 42.7 9.1 57 140-214 81-142 (456)
457 PLN03187 meiotic recombination 89.9 0.95 2.1E-05 44.8 7.0 43 148-200 127-169 (344)
458 PF08423 Rad51: Rad51; InterP 89.9 0.8 1.7E-05 43.5 6.3 52 140-201 26-82 (256)
459 TIGR03881 KaiC_arch_4 KaiC dom 89.8 0.58 1.3E-05 43.7 5.3 27 146-172 19-45 (229)
460 TIGR03880 KaiC_arch_3 KaiC dom 89.8 0.61 1.3E-05 43.4 5.4 51 147-214 16-66 (224)
461 TIGR03346 chaperone_ClpB ATP-d 89.8 3.1 6.8E-05 47.1 11.9 22 148-169 195-216 (852)
462 PRK06090 DNA polymerase III su 89.8 0.91 2E-05 44.5 6.7 41 132-172 3-50 (319)
463 PRK08451 DNA polymerase III su 89.7 1.3 2.9E-05 46.5 8.2 22 149-170 38-59 (535)
464 PRK07471 DNA polymerase III su 89.7 1.2 2.6E-05 44.7 7.7 25 148-172 42-66 (365)
465 TIGR02640 gas_vesic_GvpN gas v 89.4 0.4 8.6E-06 45.9 3.9 30 139-168 13-42 (262)
466 cd01123 Rad51_DMC1_radA Rad51_ 89.4 0.95 2.1E-05 42.4 6.5 26 147-172 19-44 (235)
467 CHL00095 clpC Clp protease ATP 89.2 2.2 4.7E-05 48.1 10.0 24 148-171 201-224 (821)
468 PF13555 AAA_29: P-loop contai 89.2 0.33 7.2E-06 34.5 2.3 18 147-164 23-40 (62)
469 TIGR03345 VI_ClpV1 type VI sec 89.1 2.4 5.2E-05 47.8 10.2 32 137-168 192-229 (852)
470 KOG1133 Helicase of the DEAD s 89.1 36 0.00077 36.6 17.6 21 317-337 547-567 (821)
471 TIGR02012 tigrfam_recA protein 89.0 0.67 1.5E-05 45.3 5.2 44 146-205 54-97 (321)
472 TIGR00767 rho transcription te 89.0 3.2 6.9E-05 41.8 9.9 28 144-172 165-192 (415)
473 PRK05636 replicative DNA helic 88.9 2.9 6.3E-05 43.9 10.1 25 147-171 265-289 (505)
474 PRK09087 hypothetical protein; 88.9 1.4 3.1E-05 41.0 7.1 19 147-165 44-62 (226)
475 PRK10865 protein disaggregatio 88.8 3 6.6E-05 47.1 10.8 119 138-334 188-324 (857)
476 PRK08058 DNA polymerase III su 88.8 2.3 5E-05 42.2 8.9 23 149-171 30-52 (329)
477 cd00071 GMPK Guanosine monopho 88.6 4.3 9.3E-05 34.4 9.3 31 229-259 77-107 (137)
478 cd01394 radB RadB. The archaea 88.6 0.55 1.2E-05 43.5 4.1 33 140-172 7-44 (218)
479 TIGR01243 CDC48 AAA family ATP 88.5 3.3 7.1E-05 46.2 10.8 26 146-172 211-236 (733)
480 PRK04841 transcriptional regul 88.5 2.3 5E-05 48.8 10.0 28 141-168 26-53 (903)
481 KOG0741 AAA+-type ATPase [Post 88.5 5.8 0.00013 40.9 11.2 56 114-169 493-560 (744)
482 cd00983 recA RecA is a bacter 88.4 0.75 1.6E-05 45.1 5.0 44 147-206 55-98 (325)
483 smart00072 GuKc Guanylate kina 88.3 1.8 3.8E-05 38.9 7.2 31 229-259 80-110 (184)
484 COG5008 PilU Tfp pilus assembl 88.3 0.44 9.5E-06 44.3 3.1 15 149-163 129-143 (375)
485 PRK14701 reverse gyrase; Provi 88.2 1.7 3.7E-05 52.1 8.6 61 412-472 121-187 (1638)
486 PF13481 AAA_25: AAA domain; P 88.1 1.2 2.6E-05 40.2 6.1 70 140-216 24-94 (193)
487 CHL00095 clpC Clp protease ATP 88.1 1.2 2.6E-05 50.2 7.1 36 135-170 512-562 (821)
488 KOG0734 AAA+-type ATPase conta 88.1 2.2 4.8E-05 43.8 8.1 17 148-164 338-354 (752)
489 KOG1513 Nuclear helicase MOP-3 88.1 0.61 1.3E-05 49.8 4.3 155 133-324 265-453 (1300)
490 PF02367 UPF0079: Uncharacteri 88.1 0.5 1.1E-05 39.0 3.0 42 144-204 12-53 (123)
491 TIGR02655 circ_KaiC circadian 88.0 0.64 1.4E-05 48.8 4.7 52 147-214 21-72 (484)
492 KOG0298 DEAD box-containing he 87.9 1 2.3E-05 50.7 6.2 96 411-511 1219-1315(1394)
493 cd01128 rho_factor Transcripti 87.7 3 6.6E-05 39.3 8.5 28 144-172 13-40 (249)
494 COG2812 DnaX DNA polymerase II 87.6 0.92 2E-05 47.2 5.3 22 148-169 39-60 (515)
495 PF13207 AAA_17: AAA domain; P 87.6 0.46 1E-05 39.1 2.7 19 150-168 2-20 (121)
496 PRK09361 radB DNA repair and r 87.3 0.72 1.6E-05 42.9 4.1 33 140-172 11-48 (225)
497 TIGR02238 recomb_DMC1 meiotic 87.3 2 4.2E-05 42.2 7.2 33 140-172 84-121 (313)
498 COG0210 UvrD Superfamily I DNA 87.2 1.4 3.1E-05 48.4 7.0 71 132-216 2-72 (655)
499 PRK09354 recA recombinase A; P 87.2 0.97 2.1E-05 44.7 5.0 43 147-205 60-102 (349)
500 PRK11034 clpA ATP-dependent Cl 87.2 2.3 4.9E-05 47.1 8.3 19 149-167 490-508 (758)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-68 Score=493.45 Aligned_cols=374 Identities=34% Similarity=0.500 Sum_probs=341.7
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCC
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~ 187 (560)
...+|.++++.+++.+++...+|..||++|+++||.++.|+|+|+.|+||||||.+|++|++++++..
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~------------ 126 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE------------ 126 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC------------
Confidence 34569999999999999999999999999999999999999999999999999999999999998652
Q ss_pred CCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHH-cCCccCC
Q 008602 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA-AGKLHTH 266 (560)
Q Consensus 188 ~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~-~~~~~~~ 266 (560)
...++++|++||||||.|+.+.|..+-...+. .+..+.||.+...+...+.+ .|+|+|+|||+|++.+. .+.+.++
T Consensus 127 -p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl-r~~~lvGG~~m~~q~~~L~k-kPhilVaTPGrL~dhl~~Tkgf~le 203 (476)
T KOG0330|consen 127 -PKLFFALVLTPTRELAQQIAEQFEALGSGIGL-RVAVLVGGMDMMLQANQLSK-KPHILVATPGRLWDHLENTKGFSLE 203 (476)
T ss_pred -CCCceEEEecCcHHHHHHHHHHHHHhccccCe-EEEEEecCchHHHHHHHhhc-CCCEEEeCcHHHHHHHHhccCccHH
Confidence 23478999999999999999999887555544 47889999999999888866 57899999999999887 6678899
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
.++++|+||||++++++|.+.+..|++.++ .++|++++|||++..+.++....+++|..+...
T Consensus 204 ~lk~LVlDEADrlLd~dF~~~ld~ILk~ip-----------------~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s 266 (476)
T KOG0330|consen 204 QLKFLVLDEADRLLDMDFEEELDYILKVIP-----------------RERQTFLFSATMTKKVRKLQRASLDNPVKVAVS 266 (476)
T ss_pred HhHHHhhchHHhhhhhhhHHHHHHHHHhcC-----------------ccceEEEEEeecchhhHHHHhhccCCCeEEecc
Confidence 999999999999999999999999999985 688999999999999999999999998887643
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhH
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQL 426 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~ 426 (560)
.. ...-+.++++|.......|...|..++.+..+.++||||++....
T Consensus 267 ~k---------------------------------y~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt 313 (476)
T KOG0330|consen 267 SK---------------------------------YQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTT 313 (476)
T ss_pred ch---------------------------------hcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchH
Confidence 32 123346777888888888999999999998899999999999999
Q ss_pred HHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccC
Q 008602 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGR 506 (560)
Q Consensus 427 ~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR 506 (560)
..++-.|+..|+.+..+||+|++..|.-.++.|++|.++||||||+++||+|||.|++|||||.|.+..+|+||+||+||
T Consensus 314 ~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaR 393 (476)
T KOG0330|consen 314 RFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTAR 393 (476)
T ss_pred HHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCce
Q 008602 507 LGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRL 546 (560)
Q Consensus 507 ~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~ 546 (560)
+|++|+++.|++.-|...+++|+..++...+.+....+..
T Consensus 394 aGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~~~ 433 (476)
T KOG0330|consen 394 AGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKNEV 433 (476)
T ss_pred cCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchHHH
Confidence 9999999999999999999999999999998888777544
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-67 Score=522.01 Aligned_cols=368 Identities=32% Similarity=0.536 Sum_probs=326.8
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
..|+++++++++...+...||..|||+|...||.+++|+|++..+.||||||++|++|++.++.... +...+.
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~-------~~~~~~ 163 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ-------GKLSRG 163 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc-------ccccCC
Confidence 3799999999999999999999999999999999999999999999999999999999999985421 123356
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.++.+|||+||||||.|+...+.++...... ...+++||.....|...+.+|- +|+|+||++|.++++.+.+.++++.
T Consensus 164 ~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~-~~~cvyGG~~~~~Q~~~l~~gv-diviaTPGRl~d~le~g~~~l~~v~ 241 (519)
T KOG0331|consen 164 DGPIVLVLAPTRELAVQVQAEAREFGKSLRL-RSTCVYGGAPKGPQLRDLERGV-DVVIATPGRLIDLLEEGSLNLSRVT 241 (519)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHcCCCCc-cEEEEeCCCCccHHHHHHhcCC-cEEEeCChHHHHHHHcCCcccccee
Confidence 7899999999999999999999998766653 3678999999999999999874 8999999999999999999999999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
|+|+||||+|++++|.+++++|+..++ ++.+|++++|||++..+..++..|+.+|..+......
T Consensus 242 ylVLDEADrMldmGFe~qI~~Il~~i~----------------~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~ 305 (519)
T KOG0331|consen 242 YLVLDEADRMLDMGFEPQIRKILSQIP----------------RPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKK 305 (519)
T ss_pred EEEeccHHhhhccccHHHHHHHHHhcC----------------CCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchh
Confidence 999999999999999999999999985 2566999999999999999999999999888765432
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhc---CCCeEEEEEcChhhH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL---DAQTVIAFMNNTRQL 426 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~---~~~~~iif~~~~~~~ 426 (560)
.+ .-...+.+....+....|...|..++... .++++||||++...+
T Consensus 306 ~~-------------------------------~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~ 354 (519)
T KOG0331|consen 306 EL-------------------------------KANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTC 354 (519)
T ss_pred hh-------------------------------hhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhH
Confidence 11 01123444455555666666676666653 568999999999999
Q ss_pred HHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccC
Q 008602 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGR 506 (560)
Q Consensus 427 ~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR 506 (560)
++++..|+..++++..+||+.++.+|..+++.|++|++.|||||+++++|||||+|++|||||+|.++++|+||+||+||
T Consensus 355 ~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGR 434 (519)
T KOG0331|consen 355 DELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGR 434 (519)
T ss_pred HHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEecCccHHHHHHHHHHhC
Q 008602 507 LGRRGTVVSICEEPEVFVVKKMQKQLA 533 (560)
Q Consensus 507 ~g~~g~~~~l~~~~e~~~~~~l~~~l~ 533 (560)
+|+.|.+++|++..+......+.+.+.
T Consensus 435 a~~~G~A~tfft~~~~~~a~~l~~~l~ 461 (519)
T KOG0331|consen 435 AGKKGTAITFFTSDNAKLARELIKVLR 461 (519)
T ss_pred CCCCceEEEEEeHHHHHHHHHHHHHHH
Confidence 999999999999999888877776653
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-62 Score=508.58 Aligned_cols=368 Identities=39% Similarity=0.614 Sum_probs=330.6
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
..|+++++++.+++.+.+.||..|||+|..+||.++.|+|+++.++||||||++|++|+++.+... ...
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-----------~~~ 97 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-----------VER 97 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-----------ccc
Confidence 569999999999999999999999999999999999999999999999999999999999997421 001
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
....+||++|||+||.|+++.+..+........+..++||.+...+...+..+ ++|||+||++|.+++..+.++++.+.
T Consensus 98 ~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~ 176 (513)
T COG0513 98 KYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG-VDIVVATPGRLLDLIKRGKLDLSGVE 176 (513)
T ss_pred CCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC-CCEEEECccHHHHHHHcCCcchhhcC
Confidence 11119999999999999999999987765334478899999999999999886 89999999999999999999999999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
++|+||||+|++++|.+.+..|+..++ .++|+++||||++..+..+++.++.+|..+......
T Consensus 177 ~lVlDEADrmLd~Gf~~~i~~I~~~~p-----------------~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~ 239 (513)
T COG0513 177 TLVLDEADRMLDMGFIDDIEKILKALP-----------------PDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK 239 (513)
T ss_pred EEEeccHhhhhcCCCHHHHHHHHHhCC-----------------cccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc
Confidence 999999999999999999999999985 578999999999999999999999999866643100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhh-HHHHHHHHHHhcCCCeEEEEEcChhhHHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH-KVDTLRRCVHALDAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~~~~~~~~~~iif~~~~~~~~~ 428 (560)
.......+.+++....... |...|..++......++||||++...++.
T Consensus 240 -------------------------------~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~ 288 (513)
T COG0513 240 -------------------------------LERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEE 288 (513)
T ss_pred -------------------------------ccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHH
Confidence 0112345667777777655 99999999998878899999999999999
Q ss_pred HHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCC
Q 008602 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG 508 (560)
Q Consensus 429 ~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 508 (560)
++..|...|+++..+||+|++++|.++++.|++|+.+||||||+++||||||++++|||||.|.+++.|+||+||+||+|
T Consensus 289 l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG 368 (513)
T COG0513 289 LAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG 368 (513)
T ss_pred HHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEecCc-cHHHHHHHHHHhCCCcc
Q 008602 509 RRGTVVSICEEP-EVFVVKKMQKQLAVPIQ 537 (560)
Q Consensus 509 ~~g~~~~l~~~~-e~~~~~~l~~~l~~~~~ 537 (560)
..|.+++|+.+. |...+..+++.++...+
T Consensus 369 ~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 369 RKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999986 99999999999877755
No 4
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-62 Score=435.61 Aligned_cols=371 Identities=29% Similarity=0.519 Sum_probs=334.2
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
.+..+|+++++++++++.+..+||+.|..+|+.|++.|++|+|++..+..|+|||.+|.+.++..+.-
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------------ 91 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------------ 91 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------------
Confidence 45567999999999999999999999999999999999999999999999999999998888877621
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.....|++|++|||+||.|+.+.+..+....++ .++.++||.+.......+..|. +++.||||+..++.....+..+
T Consensus 92 -~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnv-q~hacigg~n~gedikkld~G~-hvVsGtPGrv~dmikr~~L~tr 168 (400)
T KOG0328|consen 92 -SVRETQALILSPTRELAVQIQKVILALGDYMNV-QCHACIGGKNLGEDIKKLDYGQ-HVVSGTPGRVLDMIKRRSLRTR 168 (400)
T ss_pred -ccceeeEEEecChHHHHHHHHHHHHHhcccccc-eEEEEecCCccchhhhhhcccc-eEeeCCCchHHHHHHhcccccc
Confidence 234578999999999999999999887555544 4788999999888888877554 7999999999999999999999
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
.++++|+||+|.|++.+|++++-.+++.++ ++.|++++|||++.++.++...|+.+|+-+...
T Consensus 169 ~vkmlVLDEaDemL~kgfk~Qiydiyr~lp-----------------~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk 231 (400)
T KOG0328|consen 169 AVKMLVLDEADEMLNKGFKEQIYDIYRYLP-----------------PGAQVVLVSATLPHEILEMTEKFMTDPVRILVK 231 (400)
T ss_pred ceeEEEeccHHHHHHhhHHHHHHHHHHhCC-----------------CCceEEEEeccCcHHHHHHHHHhcCCceeEEEe
Confidence 999999999999999999999999999885 789999999999999999999999999988754
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEE-EechhhHHHHHHHHHHhcCCCeEEEEEcChhh
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQ 425 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~ 425 (560)
+.. ....++++++. ....+.|.+.|.++.....-.+.+||||+...
T Consensus 232 rde---------------------------------ltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~k 278 (400)
T KOG0328|consen 232 RDE---------------------------------LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRK 278 (400)
T ss_pred cCC---------------------------------CchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccch
Confidence 321 01123555555 44556699999999988878899999999999
Q ss_pred HHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcccc
Q 008602 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505 (560)
Q Consensus 426 ~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~g 505 (560)
.+.+.+.+++..+.+..+||+|++++|.+++++|++|+.+||++|++-++|+|+|.|++|||||+|.+...|+||+||.|
T Consensus 279 VdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSG 358 (400)
T KOG0328|consen 279 VDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG 358 (400)
T ss_pred hhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEecCccHHHHHHHHHHhCCCccccccC
Q 008602 506 RLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFT 542 (560)
Q Consensus 506 R~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~ 542 (560)
|.|++|.++-|+..+|...+..+++.+...+++.+..
T Consensus 359 RFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 359 RFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred ccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999988887764
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.3e-61 Score=492.01 Aligned_cols=384 Identities=26% Similarity=0.415 Sum_probs=329.2
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCC
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~ 187 (560)
....|+++++++.+++.+...||..|||+|.++||.+++|+|++++||||||||++|++|++..+....... ..
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~------~~ 79 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE------DR 79 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc------cc
Confidence 345699999999999999999999999999999999999999999999999999999999998874322110 01
Q ss_pred CCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 188 ~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
...++++|||+||++||.|+++.+..+....+. .+..++||.+...+...+.. .++|+|+||++|.+++....+.+++
T Consensus 80 ~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~-~v~~~~gg~~~~~~~~~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~ 157 (423)
T PRK04837 80 KVNQPRALIMAPTRELAVQIHADAEPLAQATGL-KLGLAYGGDGYDKQLKVLES-GVDILIGTTGRLIDYAKQNHINLGA 157 (423)
T ss_pred ccCCceEEEECCcHHHHHHHHHHHHHHhccCCc-eEEEEECCCCHHHHHHHhcC-CCCEEEECHHHHHHHHHcCCccccc
Confidence 134688999999999999999999888766543 46778888888777776654 5799999999999999988899999
Q ss_pred eeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecc
Q 008602 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347 (560)
Q Consensus 268 l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 347 (560)
+++|||||||+|++.+|...+..++..++. ...++.+++|||++..+..+...++.+|..+....
T Consensus 158 v~~lViDEad~l~~~~f~~~i~~i~~~~~~---------------~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~ 222 (423)
T PRK04837 158 IQVVVLDEADRMFDLGFIKDIRWLFRRMPP---------------ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP 222 (423)
T ss_pred ccEEEEecHHHHhhcccHHHHHHHHHhCCC---------------ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC
Confidence 999999999999999999999999887742 13457899999999999999988888887665322
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHH
Q 008602 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~ 427 (560)
... ....+.+.+.......+...+..++......++||||+++..++
T Consensus 223 ~~~---------------------------------~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~ 269 (423)
T PRK04837 223 EQK---------------------------------TGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCE 269 (423)
T ss_pred CCc---------------------------------CCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 100 00122333444555677788888887777789999999999999
Q ss_pred HHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC
Q 008602 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 428 ~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~ 507 (560)
.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+||+||.
T Consensus 270 ~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~ 349 (423)
T PRK04837 270 EIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA 349 (423)
T ss_pred HHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCcee
Q 008602 508 GRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLV 547 (560)
Q Consensus 508 g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~ 547 (560)
|+.|.|++|+.+.|...+..+++.++..++...+..+++.
T Consensus 350 G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 389 (423)
T PRK04837 350 GASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDALL 389 (423)
T ss_pred CCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhhhh
Confidence 9999999999999999999999999999887777665544
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.4e-61 Score=463.62 Aligned_cols=395 Identities=29% Similarity=0.450 Sum_probs=340.0
Q ss_pred ccccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcC
Q 008602 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDK 178 (560)
Q Consensus 99 ~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~ 178 (560)
..++...|.|..+|++.+++.++++.+...||..|+|+|..|||..++++|+|..++||||||.+|++|++..+...+..
T Consensus 234 s~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~ 313 (673)
T KOG0333|consen 234 SIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPM 313 (673)
T ss_pred eecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCc
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999988554322
Q ss_pred CCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHH
Q 008602 179 SSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEIS 258 (560)
Q Consensus 179 ~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l 258 (560)
.. ......|+.++|++|||+||+|+.++-.++.+..+.. +..++||....++--.+..|+ +|+|+||++|.+.+
T Consensus 314 ~~----~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r-~vsvigg~s~EEq~fqls~gc-eiviatPgrLid~L 387 (673)
T KOG0333|consen 314 AR----LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIR-TVSVIGGLSFEEQGFQLSMGC-EIVIATPGRLIDSL 387 (673)
T ss_pred ch----hhhcccCceeeeechHHHHHHHHHHHHHHhcccccce-EEEEecccchhhhhhhhhccc-eeeecCchHHHHHH
Confidence 21 1124668999999999999999999999988877644 667899999988877777765 79999999999999
Q ss_pred HcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCC-CCchhhh-----hhccC--ceEEEEEeeCChHHH
Q 008602 259 AAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANP-REPKSAL-----AMRAE--RQTIMVSATVPFSVI 330 (560)
Q Consensus 259 ~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~-~~~~~~~-----~~~~~--~~~l~~SAT~~~~~~ 330 (560)
.+..+.++.+.++|+|||++|.+++|.+++.+++..++....... +...... -.++. +|.++||||+++.+.
T Consensus 388 enr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve 467 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE 467 (673)
T ss_pred HHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH
Confidence 999999999999999999999999999999999999975433211 1111111 11222 799999999999999
Q ss_pred HHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh
Q 008602 331 RAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA 410 (560)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 410 (560)
.+++.|+.+|..+..+..-. -.+.+.+.+.+.....+...|..++..
T Consensus 468 rlar~ylr~pv~vtig~~gk---------------------------------~~~rveQ~v~m~~ed~k~kkL~eil~~ 514 (673)
T KOG0333|consen 468 RLARSYLRRPVVVTIGSAGK---------------------------------PTPRVEQKVEMVSEDEKRKKLIEILES 514 (673)
T ss_pred HHHHHHhhCCeEEEeccCCC---------------------------------CccchheEEEEecchHHHHHHHHHHHh
Confidence 99999999999987554211 112345555566666678999999999
Q ss_pred cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC
Q 008602 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL 490 (560)
Q Consensus 411 ~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~ 490 (560)
....++|||+|..+.++.+++.|.+.++++..|||+-++++|+.++..|++|..+|||||+++++|||||+|.+|||||+
T Consensus 515 ~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 515 NFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHh
Q 008602 491 PTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532 (560)
Q Consensus 491 p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l 532 (560)
++|+.+|.||+||+||+|+.|.+++|+++.|...+..|.+.+
T Consensus 595 aksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred hhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 999999999999999999999999999999977666665543
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.4e-61 Score=501.00 Aligned_cols=378 Identities=29% Similarity=0.445 Sum_probs=322.7
Q ss_pred ccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCC
Q 008602 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180 (560)
Q Consensus 101 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~ 180 (560)
.+...|.+..+|+++++++.+++.+.+.||..|||+|.++||.+++|+|+++++|||||||++|++|++.++.....
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~--- 197 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL--- 197 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---
Confidence 45678899999999999999999999999999999999999999999999999999999999999999988743211
Q ss_pred CCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc
Q 008602 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA 260 (560)
Q Consensus 181 ~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~ 260 (560)
.....++++|||+||++||.|+++++.++....... +..++||.....+...+..+ ++|+|+||++|.+++..
T Consensus 198 -----~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~-~~~~~gg~~~~~q~~~l~~~-~~IlVaTPgrL~d~l~~ 270 (545)
T PTZ00110 198 -----LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR-NTVAYGGVPKRGQIYALRRG-VEILIACPGRLIDFLES 270 (545)
T ss_pred -----ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc-EEEEeCCCCHHHHHHHHHcC-CCEEEECHHHHHHHHHc
Confidence 112457899999999999999999999876554433 66788998888888887765 68999999999999998
Q ss_pred CCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCC-C
Q 008602 261 GKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH-D 339 (560)
Q Consensus 261 ~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-~ 339 (560)
....++++++|||||||+|++++|...+..++..+. +.+|++++|||++..+..+++.++. +
T Consensus 271 ~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~-----------------~~~q~l~~SAT~p~~v~~l~~~l~~~~ 333 (545)
T PTZ00110 271 NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR-----------------PDRQTLMWSATWPKEVQSLARDLCKEE 333 (545)
T ss_pred CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC-----------------CCCeEEEEEeCCCHHHHHHHHHHhccC
Confidence 888999999999999999999999999999988773 6789999999999999999888765 4
Q ss_pred CeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhc--CCCeEE
Q 008602 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL--DAQTVI 417 (560)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~i 417 (560)
+..+...... + .....+.+.+.......|...|..++... .+.++|
T Consensus 334 ~v~i~vg~~~-l-------------------------------~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~L 381 (545)
T PTZ00110 334 PVHVNVGSLD-L-------------------------------TACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKIL 381 (545)
T ss_pred CEEEEECCCc-c-------------------------------ccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEE
Confidence 5544322110 0 00112333444445556677777777653 578999
Q ss_pred EEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhh
Q 008602 418 AFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497 (560)
Q Consensus 418 if~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y 497 (560)
|||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++.+|
T Consensus 382 IF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~y 461 (545)
T PTZ00110 382 IFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDY 461 (545)
T ss_pred EEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCcc
Q 008602 498 AHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQ 537 (560)
Q Consensus 498 ~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~ 537 (560)
+||+||+||.|..|.|++|+++.+...+..+.+.+....+
T Consensus 462 vqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q 501 (545)
T PTZ00110 462 VHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQ 501 (545)
T ss_pred HHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccC
Confidence 9999999999999999999999998888888776655443
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.6e-60 Score=494.34 Aligned_cols=368 Identities=32% Similarity=0.522 Sum_probs=327.8
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
.+|+++++++.+.+.+...||..|||+|.+||+.+++|+|++++||||||||++|++|++..+.. ..
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-------------~~ 70 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-------------KR 70 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-------------cc
Confidence 46999999999999999999999999999999999999999999999999999999999998732 12
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.+.++||++||++||.|++++++.+........+..++||.+...+...+.. .++|+|+||++|.+++..+.+.+++++
T Consensus 71 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~-~~~IvV~Tp~rl~~~l~~~~~~l~~l~ 149 (460)
T PRK11776 71 FRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH-GAHIIVGTPGRILDHLRKGTLDLDALN 149 (460)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC-CCCEEEEChHHHHHHHHcCCccHHHCC
Confidence 3568999999999999999999988665544557788999998888877764 568999999999999998888999999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
+||+||||+|++.+|...+..++..++ ...|++++|||+++.+..+...++.+|..+......
T Consensus 150 ~lViDEad~~l~~g~~~~l~~i~~~~~-----------------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~ 212 (460)
T PRK11776 150 TLVLDEADRMLDMGFQDAIDAIIRQAP-----------------ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH 212 (460)
T ss_pred EEEEECHHHHhCcCcHHHHHHHHHhCC-----------------cccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC
Confidence 999999999999999999999988874 577999999999999999999999988876532211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~ 429 (560)
. ...+.+++.......+...+..++......++||||+++..++.+
T Consensus 213 ~----------------------------------~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l 258 (460)
T PRK11776 213 D----------------------------------LPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEV 258 (460)
T ss_pred C----------------------------------CCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHH
Confidence 0 112344555555566888888888887788999999999999999
Q ss_pred HHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCC
Q 008602 430 VFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGR 509 (560)
Q Consensus 430 ~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 509 (560)
+..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||.|.+...|+||+||+||.|.
T Consensus 259 ~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~ 338 (460)
T PRK11776 259 ADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGS 338 (460)
T ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccHHHHHHHHHHhCCCccccccC
Q 008602 510 RGTVVSICEEPEVFVVKKMQKQLAVPIQACEFT 542 (560)
Q Consensus 510 ~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~ 542 (560)
.|.||+|+.+.|...+..+++.++.+++...++
T Consensus 339 ~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~ 371 (460)
T PRK11776 339 KGLALSLVAPEEMQRANAIEDYLGRKLNWEPLP 371 (460)
T ss_pred cceEEEEEchhHHHHHHHHHHHhCCCCceecCC
Confidence 999999999999999999999999888776664
No 9
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.7e-61 Score=458.07 Aligned_cols=381 Identities=31% Similarity=0.458 Sum_probs=338.0
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
.....|++..+++...+++..+||..+|++|+..++.++.|+|+++.|.||+|||++|++|+++.+...+.+.
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~------- 151 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP------- 151 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-------
Confidence 3345588899999999999999999999999999999999999999999999999999999999986655433
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC-ccC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK-LHT 265 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~-~~~ 265 (560)
..+..++|+||||+||.|++.+.++++.......++.++||.+.......+.+ .++|+|+|||+|.+.+++.. +.+
T Consensus 152 --r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~ 228 (543)
T KOG0342|consen 152 --RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLF 228 (543)
T ss_pred --CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcchh
Confidence 46778999999999999999999999988877779999999999999999998 67999999999999888655 456
Q ss_pred CCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCC-CCeEEe
Q 008602 266 HGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH-DPLLVQ 344 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-~~~~~~ 344 (560)
.+++++|+|||||+++.+|.+.+++|++.++ ..+|.++||||.++.+...++..+. +|..+.
T Consensus 229 r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp-----------------k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~ 291 (543)
T KOG0342|consen 229 RNLKCLVLDEADRLLDIGFEEDVEQIIKILP-----------------KQRQTLLFSATQPSKVKDLARGALKRDPVFVN 291 (543)
T ss_pred hccceeEeecchhhhhcccHHHHHHHHHhcc-----------------ccceeeEeeCCCcHHHHHHHHHhhcCCceEee
Confidence 7889999999999999999999999999885 6789999999999999999987554 466665
Q ss_pred eccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCC-CeEEEEEcCh
Q 008602 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDA-QTVIAFMNNT 423 (560)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~-~~~iif~~~~ 423 (560)
..+.- .......+.+.|+++....+...+..++..+.. .+++|||++.
T Consensus 292 ~~d~~-------------------------------~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~ 340 (543)
T KOG0342|consen 292 VDDGG-------------------------------ERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTC 340 (543)
T ss_pred cCCCC-------------------------------CcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechh
Confidence 32211 112233566777888877778888888887655 8999999999
Q ss_pred hhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcc
Q 008602 424 RQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGR 503 (560)
Q Consensus 424 ~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR 503 (560)
.....++..|+...++|..+||++++..|..+...|++.+.-||||||+++||+|+|+|++||+||+|.++.+|+||+||
T Consensus 341 ~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGR 420 (543)
T KOG0342|consen 341 MSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGR 420 (543)
T ss_pred hHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCceee
Q 008602 504 TGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVI 548 (560)
Q Consensus 504 ~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~ 548 (560)
+||.|..|.++++..+.|..+++.+. .+|.+..+|+..+...
T Consensus 421 TaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~ 462 (543)
T KOG0342|consen 421 TAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPED 462 (543)
T ss_pred ccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHH
Confidence 99999999999999999999999988 6788888887766543
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.2e-60 Score=498.31 Aligned_cols=376 Identities=33% Similarity=0.543 Sum_probs=332.5
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
.+|.++++++.+++.+..+||.+|||+|.++|+.+++++|+|++||||||||++|++|++..+.. ..
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-------------~~ 72 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------------EL 72 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-------------cc
Confidence 35999999999999999999999999999999999999999999999999999999999988732 13
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.++++|||+||++||.|+++.+..+........+..++||.....+...+.. .++|+|+||++|.+.+....+.+++++
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~-~~~IVVgTPgrl~d~l~r~~l~l~~l~ 151 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIVVGTPGRLLDHLKRGTLDLSKLS 151 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4578999999999999999999988766555567788999888877777755 468999999999999998889999999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
+|||||||+|++++|.+.+..++..++ ...|+++||||++..+..+...++.+|..+......
T Consensus 152 ~lVlDEAd~ml~~gf~~di~~Il~~lp-----------------~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~ 214 (629)
T PRK11634 152 GLVLDEADEMLRMGFIEDVETIMAQIP-----------------EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV 214 (629)
T ss_pred EEEeccHHHHhhcccHHHHHHHHHhCC-----------------CCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc
Confidence 999999999999999999999988874 567999999999999999999999888766432100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~ 429 (560)
.....+.+.++......+.+.|..++......++||||+++..+..+
T Consensus 215 ---------------------------------~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 215 ---------------------------------TTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred ---------------------------------ccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHH
Confidence 01112344555555667888888888877778999999999999999
Q ss_pred HHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCC
Q 008602 430 VFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGR 509 (560)
Q Consensus 430 ~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 509 (560)
+..|.+.++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||.|+
T Consensus 262 ~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 262 AEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 (629)
T ss_pred HHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccHHHHHHHHHHhCCCccccccCCCceeec
Q 008602 510 RGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIG 549 (560)
Q Consensus 510 ~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 549 (560)
.|.|++|+++.|...++.+++.++..++...++..+.+..
T Consensus 342 ~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~ 381 (629)
T PRK11634 342 AGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGK 381 (629)
T ss_pred cceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHH
Confidence 9999999999999999999999999999888877655443
No 11
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-59 Score=445.75 Aligned_cols=378 Identities=32% Similarity=0.474 Sum_probs=329.6
Q ss_pred CcccCC--CCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 111 SFLELG--LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 111 ~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
.|++++ |++++++.+...||...||.|..+||.+++++|+++.++||||||++|++|+++.+.....+.+
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-------- 76 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-------- 76 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC--------
Confidence 466664 6699999999999999999999999999999999999999999999999999999844322211
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC--ccCC
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK--LHTH 266 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~--~~~~ 266 (560)
....-+||++|||+||.|+.+....+..........+++||.+.......+++..++|+|||||+|.++++... ++++
T Consensus 77 ~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~r 156 (567)
T KOG0345|consen 77 PGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFR 156 (567)
T ss_pred ccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccc
Confidence 11245899999999999999998888776566667889999999999999999999999999999999998754 4556
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
++.++|+||||++++++|...++.|+..++ ..+++=+||||...++..+.+.++++|..+...
T Consensus 157 sLe~LVLDEADrLldmgFe~~~n~ILs~LP-----------------KQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~ 219 (567)
T KOG0345|consen 157 SLEILVLDEADRLLDMGFEASVNTILSFLP-----------------KQRRTGLFSATQTQEVEDLARAGLRNPVRVSVK 219 (567)
T ss_pred ccceEEecchHhHhcccHHHHHHHHHHhcc-----------------cccccccccchhhHHHHHHHHhhccCceeeeec
Confidence 999999999999999999999999999996 567889999999999999999999999988743
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhH
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQL 426 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~ 426 (560)
.... ...|..+..+|+.+....|...+.+++......++|||+++....
T Consensus 220 ~k~~-------------------------------~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasV 268 (567)
T KOG0345|consen 220 EKSK-------------------------------SATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASV 268 (567)
T ss_pred cccc-------------------------------ccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchH
Confidence 2210 114556888999999999999999999998889999999999999
Q ss_pred HHHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccc
Q 008602 427 KDAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRT 504 (560)
Q Consensus 427 ~~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~ 504 (560)
+.....+... ...+..+||.|++.+|.++++.|.+-...+|+|||+++||||||++++||+||+|.++..|+||+||+
T Consensus 269 eYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 269 EYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred HHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 9988888765 57899999999999999999999998899999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCC
Q 008602 505 GRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544 (560)
Q Consensus 505 gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~ 544 (560)
||.|+.|.+++|+.+.|..+...+.-.-.+..+..+.+..
T Consensus 349 aR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~ 388 (567)
T KOG0345|consen 349 ARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKA 388 (567)
T ss_pred hhccCccceEEEecccHHHHHHHHHhcCccchhhhccccc
Confidence 9999999999999998877777665544455555554443
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.4e-59 Score=481.17 Aligned_cols=375 Identities=28% Similarity=0.467 Sum_probs=323.1
Q ss_pred CcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCC
Q 008602 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKT 190 (560)
Q Consensus 111 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 190 (560)
+|+++++++.+.+.+.+.||..|||+|.++|+.+++++|+++++|||||||++|++|++..+...... .....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~-------~~~~~ 74 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH-------AKGRR 74 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-------cccCC
Confidence 58999999999999999999999999999999999999999999999999999999999987432111 01123
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeE
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~l 270 (560)
..++||++||++||.|+++.+..+....... +..++||.+...+...+. +.++|+|+||++|.+++....+.++++++
T Consensus 75 ~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~-~~~~~gg~~~~~~~~~l~-~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 75 PVRALILTPTRELAAQIGENVRDYSKYLNIR-SLVVFGGVSINPQMMKLR-GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCCE-EEEEECCcCHHHHHHHHc-CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 4689999999999999999999987665543 566788888877766664 46799999999999998888888999999
Q ss_pred EEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccc
Q 008602 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350 (560)
Q Consensus 271 lIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (560)
|||||||+|++++|...+..++..++ ...|++++|||++..+..+...++.+|..+......
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~-----------------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~- 214 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLP-----------------AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN- 214 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCC-----------------ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-
Confidence 99999999999999999999988774 567999999999999999998888888766532110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHH
Q 008602 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAV 430 (560)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~ 430 (560)
.....+.+++.......+...+..++......++||||+++..++.++
T Consensus 215 --------------------------------~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~ 262 (456)
T PRK10590 215 --------------------------------TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLA 262 (456)
T ss_pred --------------------------------ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHH
Confidence 011123344445555666777777777666789999999999999999
Q ss_pred HHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCc
Q 008602 431 FKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRR 510 (560)
Q Consensus 431 ~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~ 510 (560)
..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|.+..+|+||+||+||.|..
T Consensus 263 ~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~ 342 (456)
T PRK10590 263 EQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAT 342 (456)
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccHHHHHHHHHHhCCCccccccCCC
Q 008602 511 GTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544 (560)
Q Consensus 511 g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~ 544 (560)
|.|++|+...|...+..+++.++.+++...+...
T Consensus 343 G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~~~~~ 376 (456)
T PRK10590 343 GEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGY 376 (456)
T ss_pred eeEEEEecHHHHHHHHHHHHHhcCCCcccccCCC
Confidence 9999999999999999999999998876666543
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.1e-59 Score=485.52 Aligned_cols=376 Identities=28% Similarity=0.438 Sum_probs=318.2
Q ss_pred cccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCC
Q 008602 100 LEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKS 179 (560)
Q Consensus 100 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~ 179 (560)
+.+...|.+..+|+++++++.+++.+...||..|||+|.++|+.+++|+|+++++|||||||++|++|++.++.......
T Consensus 111 ~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~ 190 (518)
T PLN00206 111 VKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH 190 (518)
T ss_pred ecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc
Confidence 34667889999999999999999999999999999999999999999999999999999999999999998874321110
Q ss_pred CCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHH
Q 008602 180 SNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA 259 (560)
Q Consensus 180 ~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~ 259 (560)
.....++++||++||++||.|+++.++.+....+.. +..++||.....+...+..+ ++|+|+||++|.+++.
T Consensus 191 ------~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~-~~~~~gG~~~~~q~~~l~~~-~~IiV~TPgrL~~~l~ 262 (518)
T PLN00206 191 ------PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFK-TALVVGGDAMPQQLYRIQQG-VELIVGTPGRLIDLLS 262 (518)
T ss_pred ------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCce-EEEEECCcchHHHHHHhcCC-CCEEEECHHHHHHHHH
Confidence 112357899999999999999999998876655433 56678888888877777654 6899999999999999
Q ss_pred cCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCC
Q 008602 260 AGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339 (560)
Q Consensus 260 ~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~ 339 (560)
.....++++++|||||||+|++.+|...+..++..+ +..|++++|||++..+..++..+..+
T Consensus 263 ~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l------------------~~~q~l~~SATl~~~v~~l~~~~~~~ 324 (518)
T PLN00206 263 KHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL------------------SQPQVLLFSATVSPEVEKFASSLAKD 324 (518)
T ss_pred cCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC------------------CCCcEEEEEeeCCHHHHHHHHHhCCC
Confidence 888899999999999999999999999999888766 45699999999999999999999888
Q ss_pred CeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhc--CCCeEE
Q 008602 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL--DAQTVI 417 (560)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~i 417 (560)
+..+..+.... ....+.+.........+...+..++... ...++|
T Consensus 325 ~~~i~~~~~~~---------------------------------~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~i 371 (518)
T PLN00206 325 IILISIGNPNR---------------------------------PNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAV 371 (518)
T ss_pred CEEEEeCCCCC---------------------------------CCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEE
Confidence 87765432100 0112233444444555666677777643 246899
Q ss_pred EEEcChhhHHHHHHHHHH-CCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhh
Q 008602 418 AFMNNTRQLKDAVFKLEA-RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496 (560)
Q Consensus 418 if~~~~~~~~~~~~~L~~-~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~ 496 (560)
|||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+
T Consensus 372 VFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~ 451 (518)
T PLN00206 372 VFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKE 451 (518)
T ss_pred EEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHH
Confidence 999999999999999975 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCC
Q 008602 497 YAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534 (560)
Q Consensus 497 y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~ 534 (560)
|+||+||+||.|..|.+++|+++++...+..+.+.+..
T Consensus 452 yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 452 YIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred HHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877777766554
No 14
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-60 Score=441.03 Aligned_cols=377 Identities=31% Similarity=0.507 Sum_probs=330.2
Q ss_pred ccCCcccCCccc-CCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCC
Q 008602 103 ESAPFAANSFLE-LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN 181 (560)
Q Consensus 103 ~~~~~~~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~ 181 (560)
...|.|...|++ |+..+++++.+.+.||..|||+|++|||.+++|.|++.++.||+|||++|++|.+.++.......
T Consensus 212 rpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~-- 289 (629)
T KOG0336|consen 212 RPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR-- 289 (629)
T ss_pred ccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh--
Confidence 347788888875 78899999999999999999999999999999999999999999999999999999885443322
Q ss_pred CCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC
Q 008602 182 GNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG 261 (560)
Q Consensus 182 ~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~ 261 (560)
....++.+|++.||++||.|+.-++.++. .....-.+++||.+...+.+.++.+ .+|+|+||++|.++...+
T Consensus 290 -----~qr~~p~~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrg-veiiiatPgrlndL~~~n 361 (629)
T KOG0336|consen 290 -----EQRNGPGVLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRG-VEIIIATPGRLNDLQMDN 361 (629)
T ss_pred -----hccCCCceEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcC-ceEEeeCCchHhhhhhcC
Confidence 23568899999999999999998888763 2233355799999999999999886 589999999999999999
Q ss_pred CccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCe
Q 008602 262 KLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341 (560)
Q Consensus 262 ~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~ 341 (560)
.+++.++.|+|+||||+|++++|..++++|+-.+ ++++|+++.|||||+.+..++..|+.+|.
T Consensus 362 ~i~l~siTYlVlDEADrMLDMgFEpqIrkilldi-----------------RPDRqtvmTSATWP~~VrrLa~sY~Kep~ 424 (629)
T KOG0336|consen 362 VINLASITYLVLDEADRMLDMGFEPQIRKILLDI-----------------RPDRQTVMTSATWPEGVRRLAQSYLKEPM 424 (629)
T ss_pred eeeeeeeEEEEecchhhhhcccccHHHHHHhhhc-----------------CCcceeeeecccCchHHHHHHHHhhhCce
Confidence 9999999999999999999999999999998776 59999999999999999999999999999
Q ss_pred EEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh-cCCCeEEEEE
Q 008602 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA-LDAQTVIAFM 420 (560)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~~~~~~iif~ 420 (560)
++..+...-.. -..+++...+.....+...+...+.. ....++||||
T Consensus 425 ~v~vGsLdL~a--------------------------------~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv 472 (629)
T KOG0336|consen 425 IVYVGSLDLVA--------------------------------VKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFV 472 (629)
T ss_pred EEEecccceee--------------------------------eeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEE
Confidence 98765432110 11344555677777788777777766 4568999999
Q ss_pred cChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhh
Q 008602 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500 (560)
Q Consensus 421 ~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr 500 (560)
.+..-++.+...|.-.|+.+..+||+-++.+|+..+++|++|+++|||||+++++|+|+|++.+|++||+|.++++|+||
T Consensus 473 ~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHR 552 (629)
T KOG0336|consen 473 SRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHR 552 (629)
T ss_pred echhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHH
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccc
Q 008602 501 AGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQA 538 (560)
Q Consensus 501 ~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~ 538 (560)
+||+||+|+.|.+++|+...|..+...+.+.|....+.
T Consensus 553 vGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQe 590 (629)
T KOG0336|consen 553 VGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQE 590 (629)
T ss_pred hcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999888887776554433
No 15
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.5e-61 Score=508.56 Aligned_cols=389 Identities=18% Similarity=0.212 Sum_probs=353.2
Q ss_pred ccccccccccCCCceecceeeeecccCCCCceeEeecCccccccccccccCCCCCCCCCCCCcccccccccccccccccc
Q 008602 17 LPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGV 96 (560)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (560)
+|++.+++++| |+|.++..+.+++||+ +.|.+.|+|. ++++++++.+.++.++.
T Consensus 515 VPVeql~lisr------------Y~g~~~~~p~L~kLG~------~~W~k~K~K~--------~~~v~diA~eLi~lyA~ 568 (1139)
T COG1197 515 VPVEQLHLISR------------YVGASDEAPKLHKLGG------GAWKKAKAKA--------RKKVRDIAAELIKLYAK 568 (1139)
T ss_pred EEHHHhhHHhh------------ccCCCCCCccccccCc------HHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 69999999999 9999999999999999 9999999998 88999999999999999
Q ss_pred ccccccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC------CcEEEEcCCCchHHHHHHHHHHh
Q 008602 97 KKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN------HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 97 ~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~------~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+....+...+.....+.+| ...++| +.||+|..||+.+.++ ||.||||++|+|||++|+.+++.
T Consensus 569 R~~~~G~af~~d~~~q~~F---------~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFk 638 (1139)
T COG1197 569 RQAKKGFAFPPDTEWQEEF---------EASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFK 638 (1139)
T ss_pred HhhccCCCCCCChHHHHHH---------HhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHH
Confidence 9999988887776666665 788999 8999999999999986 89999999999999999999999
Q ss_pred hhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCce--EEEEecCCChhHHHHHHHcCCCcEEE
Q 008602 171 KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA--VQQLVGGANRSRQEEALRKNKPAIVV 248 (560)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~IlI 248 (560)
++ ..|+||+|||||+.||+||++.|+++|.++++.+ .+.+.+.++.......+++|..||||
T Consensus 639 AV----------------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvI 702 (1139)
T COG1197 639 AV----------------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVI 702 (1139)
T ss_pred Hh----------------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEE
Confidence 99 7789999999999999999999999999999864 44588888888899999999999999
Q ss_pred eCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChH
Q 008602 249 GTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS 328 (560)
Q Consensus 249 ~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 328 (560)
|||..|.. .+.|++++++||||.|| |++.+++.++.+ +++++++.|||||.|+
T Consensus 703 GTHrLL~k-----dv~FkdLGLlIIDEEqR-FGVk~KEkLK~L---------------------r~~VDvLTLSATPIPR 755 (1139)
T COG1197 703 GTHRLLSK-----DVKFKDLGLLIIDEEQR-FGVKHKEKLKEL---------------------RANVDVLTLSATPIPR 755 (1139)
T ss_pred echHhhCC-----CcEEecCCeEEEechhh-cCccHHHHHHHH---------------------hccCcEEEeeCCCCcc
Confidence 99988866 88999999999999999 999999999999 4677999999999999
Q ss_pred HHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHH
Q 008602 329 VIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV 408 (560)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 408 (560)
+.+|+...+++.+++.+++..++ .++.++...+.....+++.+.+
T Consensus 756 TL~Msm~GiRdlSvI~TPP~~R~-----------------------------------pV~T~V~~~d~~~ireAI~REl 800 (1139)
T COG1197 756 TLNMSLSGIRDLSVIATPPEDRL-----------------------------------PVKTFVSEYDDLLIREAILREL 800 (1139)
T ss_pred hHHHHHhcchhhhhccCCCCCCc-----------------------------------ceEEEEecCChHHHHHHHHHHH
Confidence 99999999999999998876554 3556666666666666666655
Q ss_pred HhcCCCeEEEEEcChhhHHHHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEE
Q 008602 409 HALDAQTVIAFMNNTRQLKDAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486 (560)
Q Consensus 409 ~~~~~~~~iif~~~~~~~~~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI 486 (560)
.+ +|++++.+|.++.+++++..|++. ..++.+.||+|+..+.+++|.+|.+|+++|||||.++++|||||++|++|
T Consensus 801 ~R--gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 801 LR--GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred hc--CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE
Confidence 54 999999999999999999999997 78999999999999999999999999999999999999999999999999
Q ss_pred EccCCC-ChhhhHhhhccccCCCCcceEEEEecCcc
Q 008602 487 NLDLPT-DSIHYAHRAGRTGRLGRRGTVVSICEEPE 521 (560)
Q Consensus 487 ~~~~p~-s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e 521 (560)
..+... ..++..|.+||+||+++.|+||+++++..
T Consensus 879 Ie~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 879 IERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred EeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 877664 78999999999999999999999998653
No 16
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-60 Score=453.11 Aligned_cols=376 Identities=31% Similarity=0.473 Sum_probs=335.9
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCC
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~ 187 (560)
...-|++|+++....+.|...+|..+|.+|+.+||..+.|+|+|..+.||||||++|+.|+++++...+|..
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~-------- 138 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP-------- 138 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC--------
Confidence 344699999999999999999999999999999999999999999999999999999999999997777655
Q ss_pred CCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHH-cCCccCC
Q 008602 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA-AGKLHTH 266 (560)
Q Consensus 188 ~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~-~~~~~~~ 266 (560)
..|.-+||++|||+||.|+++.+.+... ......+.++||.+......++.. .+|+|||||+|+..+. ...++..
T Consensus 139 -~DGlGalIISPTRELA~QtFevL~kvgk-~h~fSaGLiiGG~~~k~E~eRi~~--mNILVCTPGRLLQHmde~~~f~t~ 214 (758)
T KOG0343|consen 139 -TDGLGALIISPTRELALQTFEVLNKVGK-HHDFSAGLIIGGKDVKFELERISQ--MNILVCTPGRLLQHMDENPNFSTS 214 (758)
T ss_pred -CCCceeEEecchHHHHHHHHHHHHHHhh-ccccccceeecCchhHHHHHhhhc--CCeEEechHHHHHHhhhcCCCCCC
Confidence 4466699999999999999999988744 445558899999998888777754 5699999999988655 4456788
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
++.++|+||||+|++++|...+..|++.++ +.+|+++||||.+.++..+++..+.+|.++...
T Consensus 215 ~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP-----------------~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvh 277 (758)
T KOG0343|consen 215 NLQMLVLDEADRMLDMGFKKTLNAIIENLP-----------------KKRQTLLFSATQTKSVKDLARLSLKDPVYVSVH 277 (758)
T ss_pred cceEEEeccHHHHHHHhHHHHHHHHHHhCC-----------------hhheeeeeecccchhHHHHHHhhcCCCcEEEEe
Confidence 999999999999999999999999999995 788999999999999999999999999988753
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhH
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQL 426 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~ 426 (560)
. ......|..++++|.+.....|++.|...+..+...++|||+.+.+++
T Consensus 278 e-------------------------------~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqv 326 (758)
T KOG0343|consen 278 E-------------------------------NAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQV 326 (758)
T ss_pred c-------------------------------cccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHH
Confidence 1 122356778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccc
Q 008602 427 KDAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRT 504 (560)
Q Consensus 427 ~~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~ 504 (560)
..++..+.+. |+++..+||.|++..|..++..|-+.+..||+||++++||+|+|.|++||++|.|.++++|+||+||+
T Consensus 327 kf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRt 406 (758)
T KOG0343|consen 327 KFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRT 406 (758)
T ss_pred HHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhh
Confidence 9999999886 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEecCcc-HHHHHHHHHHhCCCccccccCCC
Q 008602 505 GRLGRRGTVVSICEEPE-VFVVKKMQKQLAVPIQACEFTEG 544 (560)
Q Consensus 505 gR~g~~g~~~~l~~~~e-~~~~~~l~~~l~~~~~~~~~~~~ 544 (560)
+|.+..|.|++++.+.+ ..++..+++. +++++..-...+
T Consensus 407 AR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~~~ 446 (758)
T KOG0343|consen 407 ARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKIDPE 446 (758)
T ss_pred hcccCCCceEEEEcchhHHHHHHHHHHc-CCCHHhhccCHH
Confidence 99999999999999888 7777777775 466665554433
No 17
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-60 Score=451.75 Aligned_cols=361 Identities=31% Similarity=0.472 Sum_probs=315.1
Q ss_pred cCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 109 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
..+|.++.||..+++.+...||..|||+|...||..+-|+|+..||.||||||.+|++|+++.++-.+.+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---------- 249 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---------- 249 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc----------
Confidence 4579999999999999999999999999999999999999999999999999999999999998543322
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc-CCccCCC
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA-GKLHTHG 267 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~-~~~~~~~ 267 (560)
....+||||||||+||.|++...+++..... ..++..+||-+...|...|++ .|||||+|||+|.+.+.+ ..+++++
T Consensus 250 ~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~-I~~~L~vGGL~lk~QE~~LRs-~PDIVIATPGRlIDHlrNs~sf~lds 327 (691)
T KOG0338|consen 250 VAATRVLVLVPTRELAIQVHSVTKQLAQFTD-ITVGLAVGGLDLKAQEAVLRS-RPDIVIATPGRLIDHLRNSPSFNLDS 327 (691)
T ss_pred CcceeEEEEeccHHHHHHHHHHHHHHHhhcc-ceeeeeecCccHHHHHHHHhh-CCCEEEecchhHHHHhccCCCccccc
Confidence 3457899999999999999999999866555 568999999999999988877 579999999999887654 4578899
Q ss_pred eeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecc
Q 008602 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347 (560)
Q Consensus 268 l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 347 (560)
+.++|+||||||++.+|...+++|+..++ ..+|.++||||++..+..++...+..|+-+..++
T Consensus 328 iEVLvlDEADRMLeegFademnEii~lcp-----------------k~RQTmLFSATMteeVkdL~slSL~kPvrifvd~ 390 (691)
T KOG0338|consen 328 IEVLVLDEADRMLEEGFADEMNEIIRLCP-----------------KNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDP 390 (691)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHhcc-----------------ccccceeehhhhHHHHHHHHHhhcCCCeEEEeCC
Confidence 99999999999999999999999999985 7889999999999999999999999999887544
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEE-E--echhhHHHHHHHHHHhcCCCeEEEEEcChh
Q 008602 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC-V--TKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424 (560)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~k~~~l~~~~~~~~~~~~iif~~~~~ 424 (560)
.... +..+.+-+. + .....+...+..++.+.....++||+.+.+
T Consensus 391 ~~~~---------------------------------a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk 437 (691)
T KOG0338|consen 391 NKDT---------------------------------APKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKK 437 (691)
T ss_pred cccc---------------------------------chhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHH
Confidence 2211 111111111 1 112223344555666655789999999999
Q ss_pred hHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccc
Q 008602 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRT 504 (560)
Q Consensus 425 ~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~ 504 (560)
.+.++.-.|--.|+++..+||.+++.+|.+.++.|++++++|||||+++++||||++|.+||||++|.+...|+||+||+
T Consensus 438 ~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRT 517 (691)
T KOG0338|consen 438 QAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRT 517 (691)
T ss_pred HHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhh
Confidence 99999988888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEecCccHHHHHHHHHH
Q 008602 505 GRLGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 505 gR~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
.|+|+.|.+++|+.+.|+..++.+.+.
T Consensus 518 ARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 518 ARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred hhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999998876
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-58 Score=484.24 Aligned_cols=382 Identities=27% Similarity=0.442 Sum_probs=324.2
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
....+|+++++++.+++.|.+.||..|||+|.++||.+++|+|+++++|||||||++|++|++..+....... .
T Consensus 6 ~~~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~------~ 79 (572)
T PRK04537 6 LTDLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA------D 79 (572)
T ss_pred cCCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc------c
Confidence 3345699999999999999999999999999999999999999999999999999999999999874321100 0
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC-CccC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG-KLHT 265 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~-~~~~ 265 (560)
....++++|||+||++||.|+++.+.++..... ..+..++|+.+...+...+.. .++|+|+||++|.+++... .+.+
T Consensus 80 ~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~-i~v~~l~Gg~~~~~q~~~l~~-~~dIiV~TP~rL~~~l~~~~~~~l 157 (572)
T PRK04537 80 RKPEDPRALILAPTRELAIQIHKDAVKFGADLG-LRFALVYGGVDYDKQRELLQQ-GVDVIIATPGRLIDYVKQHKVVSL 157 (572)
T ss_pred cccCCceEEEEeCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHHhC-CCCEEEECHHHHHHHHHhccccch
Confidence 112357899999999999999999988866554 347788999888877766654 5789999999999988765 4678
Q ss_pred CCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEee
Q 008602 266 HGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 345 (560)
+++++|||||||+|++.+|...+..++..++. +..+|+++||||++..+..+...++.+|..+..
T Consensus 158 ~~v~~lViDEAh~lld~gf~~~i~~il~~lp~---------------~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v 222 (572)
T PRK04537 158 HACEICVLDEADRMFDLGFIKDIRFLLRRMPE---------------RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVV 222 (572)
T ss_pred hheeeeEecCHHHHhhcchHHHHHHHHHhccc---------------ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEe
Confidence 89999999999999999999999999887742 135799999999999999999888877754432
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhh
Q 008602 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQ 425 (560)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~ 425 (560)
.... .....+.+.+.......+...+..++....+.++||||+++..
T Consensus 223 ~~~~---------------------------------~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ 269 (572)
T PRK04537 223 ETET---------------------------------ITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAF 269 (572)
T ss_pred cccc---------------------------------ccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHH
Confidence 1100 0111234455555666777788888877778899999999999
Q ss_pred HHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcccc
Q 008602 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505 (560)
Q Consensus 426 ~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~g 505 (560)
++.+++.|.+.++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+||.|.+..+|+||+||+|
T Consensus 270 ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaG 349 (572)
T PRK04537 270 VERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTA 349 (572)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCC
Q 008602 506 RLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544 (560)
Q Consensus 506 R~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~ 544 (560)
|.|..|.|++|+.+.+...+..+++.++.+++..+...+
T Consensus 350 R~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 388 (572)
T PRK04537 350 RLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTAE 388 (572)
T ss_pred cCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccChh
Confidence 999999999999999999999999999988876655553
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-59 Score=429.87 Aligned_cols=373 Identities=30% Similarity=0.490 Sum_probs=317.4
Q ss_pred cCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 109 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
...|+.+|+++++.+.+...|+..|||+|..+||.|++|+|+|.||.||||||.+|.+|+++.+ ++.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rL-------------sed 72 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRL-------------SED 72 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhh-------------ccC
Confidence 3459999999999999999999999999999999999999999999999999999999999998 234
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC----Ccc
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG----KLH 264 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~----~~~ 264 (560)
..|..++|++|||+||.|+++.|... +..-...++.++||.+.-.+...+.+ .|+|+|+|||++.+.+..+ ...
T Consensus 73 P~giFalvlTPTrELA~QiaEQF~al-Gk~l~lK~~vivGG~d~i~qa~~L~~-rPHvVvatPGRlad~l~sn~~~~~~~ 150 (442)
T KOG0340|consen 73 PYGIFALVLTPTRELALQIAEQFIAL-GKLLNLKVSVIVGGTDMIMQAAILSD-RPHVVVATPGRLADHLSSNLGVCSWI 150 (442)
T ss_pred CCcceEEEecchHHHHHHHHHHHHHh-cccccceEEEEEccHHHhhhhhhccc-CCCeEecCccccccccccCCccchhh
Confidence 56889999999999999999999775 44444558899999988777776655 6789999999999987765 235
Q ss_pred CCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEe
Q 008602 265 THGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344 (560)
Q Consensus 265 ~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 344 (560)
++++.++|+||||+|++..|...++.+.+.++ ..+|.++||||+...+.++.......+....
T Consensus 151 ~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP-----------------~~RQtLlfSATitd~i~ql~~~~i~k~~a~~ 213 (442)
T KOG0340|consen 151 FQRLKFLVLDEADRVLAGCFPDILEGIEECLP-----------------KPRQTLLFSATITDTIKQLFGCPITKSIAFE 213 (442)
T ss_pred hhceeeEEecchhhhhccchhhHHhhhhccCC-----------------CccceEEEEeehhhHHHHhhcCCcccccceE
Confidence 78999999999999999999999999988774 5579999999998766655443222211111
Q ss_pred eccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhc---CCCeEEEEEc
Q 008602 345 AKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL---DAQTVIAFMN 421 (560)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~---~~~~~iif~~ 421 (560)
.. ..........+.+.|..+....+...+..++... ..+.++||++
T Consensus 214 ~e-------------------------------~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvn 262 (442)
T KOG0340|consen 214 LE-------------------------------VIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVN 262 (442)
T ss_pred Ee-------------------------------ccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEee
Confidence 00 0011123345556666666666666666666553 4689999999
Q ss_pred ChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhh
Q 008602 422 NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501 (560)
Q Consensus 422 ~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~ 501 (560)
+..+++.+...|+..++++..+||.|++.+|...+.+|+++..+|||||+++++|+|||.|++|||||.|.++.+|+||+
T Consensus 263 ttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRv 342 (442)
T KOG0340|consen 263 TTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRV 342 (442)
T ss_pred hhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCC
Q 008602 502 GRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544 (560)
Q Consensus 502 GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~ 544 (560)
||+.|+|+.|.++.++++.|...+..+++..|.+..++.-...
T Consensus 343 GRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~ 385 (442)
T KOG0340|consen 343 GRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQR 385 (442)
T ss_pred cchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccch
Confidence 9999999999999999999999999999999999888776544
No 20
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-60 Score=429.47 Aligned_cols=371 Identities=29% Similarity=0.501 Sum_probs=339.5
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCC
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~ 187 (560)
.-..|+++.|..+++..+...||..|.|+|.++||..+.|+|+|..+..|+|||-+|.+|.++.+..
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~------------- 149 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP------------- 149 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc-------------
Confidence 3456999999999999999999999999999999999999999999999999999999999999843
Q ss_pred CCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 188 ~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
.....|++|++|||+||.|..+.+.++..... ..+....||.+..+...++.. ..+++|+||++++++...+--.+++
T Consensus 150 ~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~-~VH~~vgTPGRIlDL~~KgVa~ls~ 227 (459)
T KOG0326|consen 150 KKNVIQAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQ-TVHLVVGTPGRILDLAKKGVADLSD 227 (459)
T ss_pred cccceeEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecC-ceEEEEcCChhHHHHHhcccccchh
Confidence 34568899999999999999999988766665 447778899888877777654 4579999999999999999899999
Q ss_pred eeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecc
Q 008602 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347 (560)
Q Consensus 268 l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 347 (560)
+.++|+||||.+++..|.+.++.++..++ .++|++++|||+|..+..|...+++.|..+..-.
T Consensus 228 c~~lV~DEADKlLs~~F~~~~e~li~~lP-----------------~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~ 290 (459)
T KOG0326|consen 228 CVILVMDEADKLLSVDFQPIVEKLISFLP-----------------KERQILLYSATFPLTVKGFMDRHLKKPYEINLME 290 (459)
T ss_pred ceEEEechhhhhhchhhhhHHHHHHHhCC-----------------ccceeeEEecccchhHHHHHHHhccCcceeehhh
Confidence 99999999999999999999999999986 6889999999999999999999999999875311
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHH
Q 008602 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~ 427 (560)
.....++.+||.......|+..|..++....-.+.|||||+...++
T Consensus 291 ----------------------------------eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVE 336 (459)
T KOG0326|consen 291 ----------------------------------ELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVE 336 (459)
T ss_pred ----------------------------------hhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhH
Confidence 1223467789999999999999999999888899999999999999
Q ss_pred HHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC
Q 008602 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 428 ~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~ 507 (560)
-++..+.+.|+.+.++|+.|.++.|.+++.+|++|.++.||||+.+.+|||++++++|||||+|++.+.|.||+||+||.
T Consensus 337 LLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRF 416 (459)
T KOG0326|consen 337 LLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF 416 (459)
T ss_pred HHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEecCccHHHHHHHHHHhCCCccccccCCC
Q 008602 508 GRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544 (560)
Q Consensus 508 g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~ 544 (560)
|..|.++.+++-+|.+.+..+++.+|..+++.+-..+
T Consensus 417 GhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 417 GHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred CCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 9999999999999999999999999999998875444
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-57 Score=472.84 Aligned_cols=386 Identities=29% Similarity=0.479 Sum_probs=328.5
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
.....|.++++++.+.+.|.+.||..||++|.++|+.+++|+|++++++||||||++|++|++..+....... .
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~------~ 157 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK------E 157 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc------c
Confidence 3345689999999999999999999999999999999999999999999999999999999999874322110 0
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
....++++|||+||++||.|+++.++.+....+. .+..++||.+...+...+....++|+|+||++|..+...+...++
T Consensus 158 ~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~-~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~ 236 (475)
T PRK01297 158 RYMGEPRALIIAPTRELVVQIAKDAAALTKYTGL-NVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLD 236 (475)
T ss_pred cccCCceEEEEeCcHHHHHHHHHHHHHhhccCCC-EEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccc
Confidence 0122578999999999999999999988665543 467788888888888888888889999999999999888888999
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
++++|||||+|++++.+|...+..++..+.. ....|++++|||++.++..+...+..+|..+...
T Consensus 237 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~~---------------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 301 (475)
T PRK01297 237 MVEVMVLDEADRMLDMGFIPQVRQIIRQTPR---------------KEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIE 301 (475)
T ss_pred cCceEEechHHHHHhcccHHHHHHHHHhCCC---------------CCCceEEEEEeecCHHHHHHHHHhccCCEEEEec
Confidence 9999999999999999999999998877642 1356999999999999999999999888776532
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhH
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQL 426 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~ 426 (560)
... .......+.+.......+...+..++......++||||+++..+
T Consensus 302 ~~~---------------------------------~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~ 348 (475)
T PRK01297 302 PEN---------------------------------VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEV 348 (475)
T ss_pred cCc---------------------------------CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 110 00011223333344456677777888776678999999999999
Q ss_pred HHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccC
Q 008602 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGR 506 (560)
Q Consensus 427 ~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR 506 (560)
+.++..|...++.+..+||+|++.+|.++++.|++|+++|||||+++++|||||++++||+|++|.|..+|+||+||+||
T Consensus 349 ~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR 428 (475)
T PRK01297 349 RRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGR 428 (475)
T ss_pred HHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCceee
Q 008602 507 LGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVI 548 (560)
Q Consensus 507 ~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~ 548 (560)
.|..|.+++|+.++|.+.+..+++.++.+++ |+++..+++.
T Consensus 429 ~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 469 (475)
T PRK01297 429 AGASGVSISFAGEDDAFQLPEIEELLGRKIS-CEMPPAELLK 469 (475)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHhCCCCc-ccCCcHHHhh
Confidence 9999999999999999999999999998875 6666655543
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.2e-57 Score=468.18 Aligned_cols=370 Identities=29% Similarity=0.510 Sum_probs=317.3
Q ss_pred CcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCC
Q 008602 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKT 190 (560)
Q Consensus 111 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 190 (560)
+|+++++++.+++.+...||..||++|.++|+.+++++|+++++|||+|||++|++|++..+...... ...
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~---------~~~ 72 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR---------KSG 72 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc---------CCC
Confidence 59999999999999999999999999999999999999999999999999999999999987432111 123
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeE
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~l 270 (560)
+.++||++||++||.|+++.+..+...... .+..+.||.....+...+. +.++|+|+||++|.+++....+.++++++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~-~v~~~~gg~~~~~~~~~l~-~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~ 150 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHL-DIATITGGVAYMNHAEVFS-ENQDIVVATPGRLLQYIKEENFDCRAVET 150 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCc-EEEEEECCCCHHHHHHHhc-CCCCEEEEChHHHHHHHHcCCcCcccCCE
Confidence 578999999999999999999988765543 4777888888877766554 46789999999999999988888999999
Q ss_pred EEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh-HHHHHHHHcCCCCeEEeecccc
Q 008602 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF-SVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 271 lIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
|||||||+|++++|...+..+...++ ...|+++||||++. .+..+...++.+|..+......
T Consensus 151 lViDEah~~l~~~~~~~~~~i~~~~~-----------------~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~ 213 (434)
T PRK11192 151 LILDEADRMLDMGFAQDIETIAAETR-----------------WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR 213 (434)
T ss_pred EEEECHHHHhCCCcHHHHHHHHHhCc-----------------cccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc
Confidence 99999999999999999998877663 45699999999985 4777888877777766532211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEe-chhhHHHHHHHHHHhcCCCeEEEEEcChhhHHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVT-KLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~ 428 (560)
. ....+.+++... ....+...+..++......++||||+++..++.
T Consensus 214 ~---------------------------------~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~ 260 (434)
T PRK11192 214 R---------------------------------ERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHE 260 (434)
T ss_pred c---------------------------------cccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHH
Confidence 0 011233333333 356777888888876677899999999999999
Q ss_pred HHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCC
Q 008602 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG 508 (560)
Q Consensus 429 ~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 508 (560)
++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||.|
T Consensus 261 l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g 340 (434)
T PRK11192 261 LAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAG 340 (434)
T ss_pred HHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEecCccHHHHHHHHHHhCCCcccccc
Q 008602 509 RRGTVVSICEEPEVFVVKKMQKQLAVPIQACEF 541 (560)
Q Consensus 509 ~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~ 541 (560)
..|.++++++..|...+..+++.+..+++...+
T Consensus 341 ~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~~~~ 373 (434)
T PRK11192 341 RKGTAISLVEAHDHLLLGKIERYIEEPLKARVI 373 (434)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999988877765444
No 23
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-58 Score=442.32 Aligned_cols=413 Identities=29% Similarity=0.458 Sum_probs=331.8
Q ss_pred ccccccCCcccCCcccCCCCHHHHHHHH-hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCc
Q 008602 99 SLEIESAPFAANSFLELGLPPLLLERLE-REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKD 177 (560)
Q Consensus 99 ~~~~~~~~~~~~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~ 177 (560)
..+..+.|+....|..+|+++.+...|+ .+++..||.+|.++||.+++|+|++|.++||||||++|++|+.+.++....
T Consensus 125 vk~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ 204 (708)
T KOG0348|consen 125 VKQVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP 204 (708)
T ss_pred hccccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc
Confidence 3445677888999999999999999997 459999999999999999999999999999999999999999999976554
Q ss_pred CCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHH
Q 008602 178 KSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEI 257 (560)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~ 257 (560)
+. .+..|+.+||++||||||.|+|+.+++++..+..++-+.++||.....+..++++|. +|+|+|||+|.+.
T Consensus 205 ki-------~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGi-NILIgTPGRLvDH 276 (708)
T KOG0348|consen 205 KI-------QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGI-NILIGTPGRLVDH 276 (708)
T ss_pred cc-------cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCc-eEEEcCchHHHHH
Confidence 33 356799999999999999999999999999888787788999999999999999986 7999999999997
Q ss_pred HHc-CCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc
Q 008602 258 SAA-GKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336 (560)
Q Consensus 258 l~~-~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 336 (560)
+.+ ..+.++++++||+||+|++++.+|.+.+..|++.+.....+... .....+..|.+++|||+...+..++...
T Consensus 277 LknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~----~~~lp~q~q~mLlSATLtd~V~rLa~~s 352 (708)
T KOG0348|consen 277 LKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECK----DPKLPHQLQNMLLSATLTDGVNRLADLS 352 (708)
T ss_pred HhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcc----cccccHHHHhHhhhhhhHHHHHHHhhcc
Confidence 665 45788999999999999999999999999999988432211110 0111246789999999999999999999
Q ss_pred CCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHH----hcC
Q 008602 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH----ALD 412 (560)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~----~~~ 412 (560)
++||..+..+....-.. +...... ..+.............|..+.+.|.+....-.+-.|..++. ...
T Consensus 353 LkDpv~I~ld~s~~~~~-p~~~a~~-------ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~ 424 (708)
T KOG0348|consen 353 LKDPVYISLDKSHSQLN-PKDKAVQ-------EVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEE 424 (708)
T ss_pred ccCceeeeccchhhhcC-cchhhhh-------hcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhh
Confidence 99999987322111100 0000000 00000000111233455666666666666555555555544 345
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHC----------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEe
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEAR----------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~----------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT 470 (560)
..++|||+...+.++.-...|... +.++..+||+|++++|..++..|...+..||+||
T Consensus 425 ~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcT 504 (708)
T KOG0348|consen 425 KQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCT 504 (708)
T ss_pred hceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEeh
Confidence 678999999998888766666431 3457889999999999999999999999999999
Q ss_pred cCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHH
Q 008602 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 471 ~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
|+++||+|+|+|.+||+||+|.++++|+||+||+.|.|.+|.+++|..|.|..++..+.+.
T Consensus 505 DVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 505 DVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred hhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999988877765
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-58 Score=447.06 Aligned_cols=397 Identities=31% Similarity=0.464 Sum_probs=336.1
Q ss_pred cccccccccccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 92 KAAGVKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+..+......+...|.+...|.+..+.+.+...+...+|..|||+|+.+||.+..|++.++||+||||||.+|++|++.+
T Consensus 56 ~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~ 135 (482)
T KOG0335|consen 56 KYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISY 135 (482)
T ss_pred CccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHH
Confidence 44556666778888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCc
Q 008602 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251 (560)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp 251 (560)
+........... .....++++|++|||+||.|++++.+++....... ....+||.+...+...+.++. +|+|+||
T Consensus 136 ~~~~~~~~~~~~---~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~-~~~~ygg~~~~~q~~~~~~gc-dIlvaTp 210 (482)
T KOG0335|consen 136 LLDEGPEDRGES---GGGVYPRALILAPTRELVDQIYNEARKFSYLSGMK-SVVVYGGTDLGAQLRFIKRGC-DILVATP 210 (482)
T ss_pred HHhcCcccCccc---CCCCCCceEEEeCcHHHhhHHHHHHHhhcccccce-eeeeeCCcchhhhhhhhccCc-cEEEecC
Confidence 855433222211 11246899999999999999999999987666555 567899988888888887765 8999999
Q ss_pred hHHHHHHHcCCccCCCeeEEEEechhhhhc-cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHH
Q 008602 252 GRIAEISAAGKLHTHGCRFLVLDEIDELLS-FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVI 330 (560)
Q Consensus 252 ~~l~~~l~~~~~~~~~l~llIiDE~h~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~ 330 (560)
|+|.+++..+.+.+++++++|+||||+|+| ++|.+.++.|+....... ...+|.++||||++.++.
T Consensus 211 GrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~-------------~~~~qt~mFSAtfp~~iq 277 (482)
T KOG0335|consen 211 GRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP-------------KNNRQTLLFSATFPKEIQ 277 (482)
T ss_pred chhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC-------------ccceeEEEEeccCChhhh
Confidence 999999999999999999999999999999 999999999988764321 257899999999999999
Q ss_pred HHHHHcCCC-CeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHH
Q 008602 331 RAARSWGHD-PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409 (560)
Q Consensus 331 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~ 409 (560)
.++..|+.+ ...+..... ..-...+.+.........|...|.+++.
T Consensus 278 ~l~~~fl~~~yi~laV~rv---------------------------------g~~~~ni~q~i~~V~~~~kr~~Lldll~ 324 (482)
T KOG0335|consen 278 RLAADFLKDNYIFLAVGRV---------------------------------GSTSENITQKILFVNEMEKRSKLLDLLN 324 (482)
T ss_pred hhHHHHhhccceEEEEeee---------------------------------ccccccceeEeeeecchhhHHHHHHHhh
Confidence 999988887 333332221 1122244555556666677777778776
Q ss_pred hcC----CC-----eEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCC
Q 008602 410 ALD----AQ-----TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA 480 (560)
Q Consensus 410 ~~~----~~-----~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip 480 (560)
... .+ .++|||.+++.+..++..|...++++..+||+.++.+|.+.++.|++|++.+||||+++++|+|||
T Consensus 325 ~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~ 404 (482)
T KOG0335|consen 325 KDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIP 404 (482)
T ss_pred cccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCC
Confidence 533 33 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCcccc
Q 008602 481 ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQAC 539 (560)
Q Consensus 481 ~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~ 539 (560)
+|++||+||+|.+..+|+||+||+||.|..|.+..|++..+....+.+.+.+.-.-+.+
T Consensus 405 ~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~v 463 (482)
T KOG0335|consen 405 NVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEV 463 (482)
T ss_pred CCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999888777777777655443333
No 25
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-58 Score=442.68 Aligned_cols=395 Identities=28% Similarity=0.429 Sum_probs=309.5
Q ss_pred ccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCC
Q 008602 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN 181 (560)
Q Consensus 103 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~ 181 (560)
...+...+.|..|.++.+++.+|...||..||++|...+|++..| .|++..|+||||||++|.+|+++.+.........
T Consensus 174 ~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e 253 (731)
T KOG0347|consen 174 DSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQE 253 (731)
T ss_pred cccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhh
Confidence 344566778999999999999999999999999999999999998 8999999999999999999999965332222111
Q ss_pred CCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC
Q 008602 182 GNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG 261 (560)
Q Consensus 182 ~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~ 261 (560)
..........+.+||++|||+||.|+...+....... ...+..++||....+|..-+.. +|+|||+|||+||.++..+
T Consensus 254 ~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~ 331 (731)
T KOG0347|consen 254 LSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEED 331 (731)
T ss_pred hhhHHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhh
Confidence 1111111222349999999999999999999887654 4557889999999998877766 8899999999999998877
Q ss_pred Cc---cCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHH-------
Q 008602 262 KL---HTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIR------- 331 (560)
Q Consensus 262 ~~---~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~------- 331 (560)
.. .|+++.++|+||+|||+..++++.+..|++.+... .....+|.+.||||++-....
T Consensus 332 n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~------------~~~~qrQTlVFSATlt~~~~~~~~~~~k 399 (731)
T KOG0347|consen 332 NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEE------------QKNRQRQTLVFSATLTLVLQQPLSSSRK 399 (731)
T ss_pred hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhh------------hcccccceEEEEEEeehhhcChhHHhhh
Confidence 65 56789999999999999999999999999998621 224667999999998522211
Q ss_pred --------------HHHH--cCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchh-hhcccccCCcccceEEEE
Q 008602 332 --------------AARS--WGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQ-AKQADQSLPPALKHYYCV 394 (560)
Q Consensus 332 --------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 394 (560)
+... +...|.++...+..... .... ...........+..||++
T Consensus 400 ~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta--------------------~~l~Es~I~C~~~eKD~ylyYfl 459 (731)
T KOG0347|consen 400 KKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATA--------------------STLTESLIECPPLEKDLYLYYFL 459 (731)
T ss_pred ccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHH--------------------HHHHHHhhcCCccccceeEEEEE
Confidence 1111 12223333322110000 0000 000001111222233333
Q ss_pred echhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcc
Q 008602 395 TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474 (560)
Q Consensus 395 ~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~ 474 (560)
.. .+|++|||||+++.+.++...|+..++...++|+.|.+++|.+.+++|++....|||||++++
T Consensus 460 ~r---------------yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAA 524 (731)
T KOG0347|consen 460 TR---------------YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAA 524 (731)
T ss_pred ee---------------cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhh
Confidence 21 268999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCce
Q 008602 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRL 546 (560)
Q Consensus 475 ~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~ 546 (560)
||+|||+|.+||||-.|++.+.|+||.||++|++..|.+++++.|.+...+.++++.|+...+.--|+....
T Consensus 525 RGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~ 596 (731)
T KOG0347|consen 525 RGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETD 596 (731)
T ss_pred ccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHH
Confidence 999999999999999999999999999999999999999999999999999999999998776655665433
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-56 Score=424.76 Aligned_cols=374 Identities=29% Similarity=0.441 Sum_probs=333.4
Q ss_pred ccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCC
Q 008602 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180 (560)
Q Consensus 101 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~ 180 (560)
.+..+|.+..+|+.++++..|...+.+..|.+|||+|.+++|..+.++|++..|.||||||-+|+.|++.++...+
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~---- 289 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP---- 289 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchh----
Confidence 3457889999999999999999999999999999999999999999999999999999999999999999985543
Q ss_pred CCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc
Q 008602 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA 260 (560)
Q Consensus 181 ~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~ 260 (560)
....+.||..+|+||||+||.|++.+++++.+..+.. +.+++||.....|...|+. .+.||||||++|.+++.-
T Consensus 290 ----eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~-~v~~ygGgsk~eQ~k~Lk~-g~EivVaTPgRlid~Vkm 363 (731)
T KOG0339|consen 290 ----ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLR-VVAVYGGGSKWEQSKELKE-GAEIVVATPGRLIDMVKM 363 (731)
T ss_pred ----hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccce-EEEeecCCcHHHHHHhhhc-CCeEEEechHHHHHHHHh
Confidence 2345789999999999999999999999987877766 5678999999999999995 568999999999999999
Q ss_pred CCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCC
Q 008602 261 GKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340 (560)
Q Consensus 261 ~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~ 340 (560)
+..++.++.||||||+++|++++|..+++.|..++ ++++|.|+||||++..+..+++.++.+|
T Consensus 364 Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi-----------------rpdrQtllFsaTf~~kIe~lard~L~dp 426 (731)
T KOG0339|consen 364 KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI-----------------RPDRQTLLFSATFKKKIEKLARDILSDP 426 (731)
T ss_pred hcccceeeeEEEEechhhhhccccHHHHHHHHhhc-----------------CCcceEEEeeccchHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998 5999999999999999999999999999
Q ss_pred eEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh-cCCCeEEEE
Q 008602 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA-LDAQTVIAF 419 (560)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~~~~~~iif 419 (560)
+.+..+..-.. -....+..+++.....|...|.+.+-. ...+++|||
T Consensus 427 VrvVqg~vgea--------------------------------n~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlif 474 (731)
T KOG0339|consen 427 VRVVQGEVGEA--------------------------------NEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIF 474 (731)
T ss_pred eeEEEeehhcc--------------------------------ccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEE
Confidence 98875432110 001122344455566677766555544 567999999
Q ss_pred EcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHh
Q 008602 420 MNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499 (560)
Q Consensus 420 ~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Q 499 (560)
+.....+++++..|+-.++++..+||+|.+.+|.+++..|+.+...|||+|+++++|+|||++.+||+||+-.+++.|.|
T Consensus 475 VTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdthth 554 (731)
T KOG0339|consen 475 VTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTH 554 (731)
T ss_pred EeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCcceEEEEecCccHHHHHHHHHHhC
Q 008602 500 RAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLA 533 (560)
Q Consensus 500 r~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~ 533 (560)
|+||+||.|.+|.+|+++++.|..+.-.|.+.|.
T Consensus 555 rigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe 588 (731)
T KOG0339|consen 555 RIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLE 588 (731)
T ss_pred HhhhcccccccceeeEEechhhHHHhhHHHHHHh
Confidence 9999999999999999999999988887777654
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.9e-55 Score=449.59 Aligned_cols=369 Identities=28% Similarity=0.483 Sum_probs=313.4
Q ss_pred cCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 109 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
..+|+++++++.+.+.+..+||..|+|+|.++|+.+++++|+++++|||||||++|++|++..+.. .
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-------------~ 93 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-------------D 93 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------------C
Confidence 466999999999999999999999999999999999999999999999999999999999988732 1
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
..+.++||++||++|+.|+.+.+..+..... ..+....|+.........+..+ ++|+|+||++|.+++......++++
T Consensus 94 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 94 LNACQALILAPTRELAQQIQKVVLALGDYLK-VRCHACVGGTVVRDDINKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHHHhhhcC-ceEEEEECCcCHHHHHHHHcCC-CCEEEECcHHHHHHHHhCCcccccc
Confidence 3467899999999999999999888765433 3355677777776666666554 5899999999999888888889999
Q ss_pred eEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccc
Q 008602 269 RFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348 (560)
Q Consensus 269 ~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 348 (560)
++|||||+|++.+.++...+..++..++ +..|++++|||++.....+...++.+|..+.....
T Consensus 172 ~lvViDEah~~~~~~~~~~~~~i~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 234 (401)
T PTZ00424 172 KLFILDEADEMLSRGFKGQIYDVFKKLP-----------------PDVQVALFSATMPNEILELTTKFMRDPKRILVKKD 234 (401)
T ss_pred cEEEEecHHHHHhcchHHHHHHHHhhCC-----------------CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 9999999999999899888888877663 57799999999999999988888887765542110
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEe-chhhHHHHHHHHHHhcCCCeEEEEEcChhhHH
Q 008602 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVT-KLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~ 427 (560)
. .....+.+++... ....+...+..++......+++|||+++..++
T Consensus 235 ~---------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~ 281 (401)
T PTZ00424 235 E---------------------------------LTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVD 281 (401)
T ss_pred C---------------------------------cccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHH
Confidence 0 0001122333322 23446666777777666789999999999999
Q ss_pred HHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC
Q 008602 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 428 ~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~ 507 (560)
.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.
T Consensus 282 ~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 282 YLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRF 361 (401)
T ss_pred HHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEecCccHHHHHHHHHHhCCCccccccC
Q 008602 508 GRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFT 542 (560)
Q Consensus 508 g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~ 542 (560)
|..|.|++++++++...+..+++.++..++..+..
T Consensus 362 g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 362 GRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred CCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 99999999999999999999999998877765543
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.3e-57 Score=419.18 Aligned_cols=373 Identities=28% Similarity=0.456 Sum_probs=320.0
Q ss_pred ccccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcC
Q 008602 99 SLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDK 178 (560)
Q Consensus 99 ~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~ 178 (560)
..+++..|+|+.+|.++.++..+++.+++.|+..|||+|.+.+|.+++|+|.+..+-||||||++|.+|++...+...-.
T Consensus 159 ~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~ 238 (610)
T KOG0341|consen 159 LVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMM 238 (610)
T ss_pred EeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999988765322111
Q ss_pred CCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhC-----CCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchH
Q 008602 179 SSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG-----PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGR 253 (560)
Q Consensus 179 ~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~ 253 (560)
.+ -.+..|+..||+||+|+||.|.++-+..++. +.+......++||.....+...+++|- .|+|+||++
T Consensus 239 lP-----f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~Gv-HivVATPGR 312 (610)
T KOG0341|consen 239 LP-----FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGV-HIVVATPGR 312 (610)
T ss_pred Cc-----cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCe-eEEEcCcch
Confidence 11 1236789999999999999999988777643 333344567899999999999998875 799999999
Q ss_pred HHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHH
Q 008602 254 IAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAA 333 (560)
Q Consensus 254 l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~ 333 (560)
|.+++......+.-++|+.+||||||++++|...++.++..+. ..+|+++||||+|..+..|+
T Consensus 313 L~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK-----------------~QRQTLLFSATMP~KIQ~FA 375 (610)
T KOG0341|consen 313 LMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK-----------------GQRQTLLFSATMPKKIQNFA 375 (610)
T ss_pred HHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh-----------------hhhheeeeeccccHHHHHHH
Confidence 9999999999999999999999999999999999999999995 78899999999999999999
Q ss_pred HHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCC
Q 008602 334 RSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDA 413 (560)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 413 (560)
+.-+-.|+.+..++.-.-. . .+.+-+-..+.+.|+-.+.++++. ..
T Consensus 376 kSALVKPvtvNVGRAGAAs----------------------l-----------dViQevEyVkqEaKiVylLeCLQK-T~ 421 (610)
T KOG0341|consen 376 KSALVKPVTVNVGRAGAAS----------------------L-----------DVIQEVEYVKQEAKIVYLLECLQK-TS 421 (610)
T ss_pred HhhcccceEEecccccccc----------------------h-----------hHHHHHHHHHhhhhhhhHHHHhcc-CC
Confidence 9999999988765531110 0 011111123445566667777765 36
Q ss_pred CeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCC
Q 008602 414 QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTD 493 (560)
Q Consensus 414 ~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s 493 (560)
.+++|||....+.+.+.++|--.|+.+..+||+-++++|...++.|+.|+.+|||||++++.|+|+|++.+|||||+|..
T Consensus 422 PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~e 501 (610)
T KOG0341|consen 422 PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEE 501 (610)
T ss_pred CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhccccCCCCcceEEEEecCc-cHHHHHHH
Q 008602 494 SIHYAHRAGRTGRLGRRGTVVSICEEP-EVFVVKKM 528 (560)
Q Consensus 494 ~~~y~Qr~GR~gR~g~~g~~~~l~~~~-e~~~~~~l 528 (560)
+++|+||+||+||+|+.|.+-+|++.. +...+..+
T Consensus 502 IENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDL 537 (610)
T KOG0341|consen 502 IENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDL 537 (610)
T ss_pred HHHHHHHhcccCCCCCcceeeeeecccchHHHHHHH
Confidence 999999999999999999999999766 44444443
No 29
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8e-56 Score=479.15 Aligned_cols=387 Identities=18% Similarity=0.205 Sum_probs=310.6
Q ss_pred cccccccccccCCCceecceeeeecccCCCCceeEeecCccccccccccccCCCCCCCCCCCCccccccccccccccccc
Q 008602 16 SLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAG 95 (560)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (560)
.+|++.+++++| |+|.++..+.+++||+ ..|.++|+|. ++.++.++.+.++.++
T Consensus 371 ~vPv~~~~~~~~------------y~~~~~~~~~l~~lg~------~~w~~~k~~~--------~~~~~~~a~~l~~l~a 424 (926)
T TIGR00580 371 YVPVEQLHLISR------------YVGGSGKNPALDKLGG------KSWEKTKAKV--------KKSVREIAAKLIELYA 424 (926)
T ss_pred EEEHHHcCceee------------ecCCCCCCCcccccCc------HHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 369999999999 9998889999999999 9999998888 8888899999999988
Q ss_pred cccccccccCCcccCCcccCCCCHHH-HHHHHhCCCCCChHHHHHHHhhhhcC------CcEEEEcCCCchHHHHHHHHH
Q 008602 96 VKKSLEIESAPFAANSFLELGLPPLL-LERLEREGFNVPTEVQSAAIPSILKN------HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 96 ~~~~~~~~~~~~~~~~f~~~~l~~~l-~~~l~~~~~~~~~~~Q~~ai~~i~~~------~~~li~~~TGsGKT~~~~~~i 168 (560)
.++...+...+. +..+ ......++| +|||+|..||+.+.++ +|++++|+||||||++|++++
T Consensus 425 ~r~~~~~~~~~~----------~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~ 493 (926)
T TIGR00580 425 KRKAIKGHAFPP----------DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAA 493 (926)
T ss_pred HHHhcCCCCCCC----------CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHH
Confidence 887766543322 2333 344566799 7999999999999986 799999999999999999999
Q ss_pred HhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCC---hhHHHHHHHcCCCc
Q 008602 169 LSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN---RSRQEEALRKNKPA 245 (560)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 245 (560)
+..+ ..|.+++|++||++||.|+++.|++++...+.. +..+.++.. .......+..|.++
T Consensus 494 l~al----------------~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~-v~~Lsg~~~~~e~~~~~~~l~~g~~d 556 (926)
T TIGR00580 494 FKAV----------------LDGKQVAVLVPTTLLAQQHFETFKERFANFPVT-IELLSRFRSAKEQNEILKELASGKID 556 (926)
T ss_pred HHHH----------------HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcE-EEEEeccccHHHHHHHHHHHHcCCce
Confidence 9987 456789999999999999999999998876544 455555443 34455667788899
Q ss_pred EEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeC
Q 008602 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV 325 (560)
Q Consensus 246 IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 325 (560)
|+||||..+. ..+.++++++|||||+|+ ++..+.+.++ .+ .+..|+++||||+
T Consensus 557 IVIGTp~ll~-----~~v~f~~L~llVIDEahr-fgv~~~~~L~----~~-----------------~~~~~vL~~SATp 609 (926)
T TIGR00580 557 ILIGTHKLLQ-----KDVKFKDLGLLIIDEEQR-FGVKQKEKLK----EL-----------------RTSVDVLTLSATP 609 (926)
T ss_pred EEEchHHHhh-----CCCCcccCCEEEeecccc-cchhHHHHHH----hc-----------------CCCCCEEEEecCC
Confidence 9999996442 367789999999999998 4544443332 22 2567999999999
Q ss_pred ChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHH
Q 008602 326 PFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLR 405 (560)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 405 (560)
++++..+......++..+...+... ..+.+++...........+.
T Consensus 610 iprtl~~~l~g~~d~s~I~~~p~~R-----------------------------------~~V~t~v~~~~~~~i~~~i~ 654 (926)
T TIGR00580 610 IPRTLHMSMSGIRDLSIIATPPEDR-----------------------------------LPVRTFVMEYDPELVREAIR 654 (926)
T ss_pred CHHHHHHHHhcCCCcEEEecCCCCc-----------------------------------cceEEEEEecCHHHHHHHHH
Confidence 9999988888888887776432110 01222222222111122232
Q ss_pred HHHHhcCCCeEEEEEcChhhHHHHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCC
Q 008602 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECD 483 (560)
Q Consensus 406 ~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~ 483 (560)
..+ ..+++++||||++++++.++..|++. ++++..+||+|++.+|..++++|++|+++|||||+++++|+|+|+++
T Consensus 655 ~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~ 732 (926)
T TIGR00580 655 REL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNAN 732 (926)
T ss_pred HHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCC
Confidence 322 34789999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCC-ChhhhHhhhccccCCCCcceEEEEecCc
Q 008602 484 LVVNLDLPT-DSIHYAHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 484 ~VI~~~~p~-s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
+||+++.|. +..+|.||+||+||.|++|+||+++++.
T Consensus 733 ~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 733 TIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999875 6789999999999999999999999654
No 30
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-55 Score=412.09 Aligned_cols=366 Identities=30% Similarity=0.443 Sum_probs=312.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
..|++|+|++.+++++.+.||..||-+|+.|||.+++|+|++..|.||||||.+|++|+++.+...+... ...
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~-------~~e 91 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN-------DGE 91 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc-------ccc
Confidence 5699999999999999999999999999999999999999999999999999999999999886544322 235
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCc-eEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC-ccCCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKK-AVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK-LHTHG 267 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~-~~~~~ 267 (560)
.|+.++|++||++||.|++..+.++....... .+.-+.+..+-.... .+....|+|+|+||+++..++..+. ..+..
T Consensus 92 ~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~ 170 (569)
T KOG0346|consen 92 QGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDS 170 (569)
T ss_pred ccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccchhhhh
Confidence 68899999999999999999998874433211 111223233333333 4445678999999999999998887 57788
Q ss_pred eeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecc
Q 008602 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347 (560)
Q Consensus 268 l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 347 (560)
+.++|+||||.+++.++.+.++.+..+++ +..|.++||||++.++..+.+.++++|.++....
T Consensus 171 l~~LVvDEADLllsfGYeedlk~l~~~LP-----------------r~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e 233 (569)
T KOG0346|consen 171 LSFLVVDEADLLLSFGYEEDLKKLRSHLP-----------------RIYQCFLMSATLSDDVQALKKLFLHNPVILKLTE 233 (569)
T ss_pred eeeEEechhhhhhhcccHHHHHHHHHhCC-----------------chhhheeehhhhhhHHHHHHHHhccCCeEEEecc
Confidence 99999999999999999999999999986 5679999999999999999999999999875321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh-cCCCeEEEEEcChhhH
Q 008602 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA-LDAQTVIAFMNNTRQL 426 (560)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~~~~~~iif~~~~~~~ 426 (560)
. ....+..+.+|+..+....|...+..++.- .-.|++|||+|+++.+
T Consensus 234 ~--------------------------------el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~ 281 (569)
T KOG0346|consen 234 G--------------------------------ELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRC 281 (569)
T ss_pred c--------------------------------cCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhh
Confidence 1 111334677888888888888887777763 4568999999999999
Q ss_pred HHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec-----------------------------------
Q 008602 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE----------------------------------- 471 (560)
Q Consensus 427 ~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~----------------------------------- 471 (560)
.++.-.|...|++..+++|.|+...|.-++++|..|-++++||||
T Consensus 282 YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~ 361 (569)
T KOG0346|consen 282 YRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKES 361 (569)
T ss_pred HHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchh
Confidence 999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHh
Q 008602 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQL 532 (560)
Q Consensus 472 ~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l 532 (560)
-++||||+..|..|+|||+|.++..|+||+||++|++.+|.++.|+.+.+......++..+
T Consensus 362 GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 362 GVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred chhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHH
Confidence 1358999999999999999999999999999999999999999999999988555555443
No 31
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1e-54 Score=480.36 Aligned_cols=388 Identities=17% Similarity=0.203 Sum_probs=311.3
Q ss_pred cccccccccccCCCceecceeeeecccCCCCceeEeecCccccccccccccCCCCCCCCCCCCccccccccccccccccc
Q 008602 16 SLPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAG 95 (560)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (560)
.+|++.+++++| |+|.++..+.+++||+ ..|.+.|+|. +++++.++.+.++.++
T Consensus 520 ~vPv~~~~~~~~------------y~~~~~~~~~l~~lg~------~~w~~~k~~~--------~~~~~~~a~~l~~~~a 573 (1147)
T PRK10689 520 YVPVSSLHLISR------------YAGGAEENAPLHKLGG------DAWSRARQKA--------AEKVRDVAAELLDIYA 573 (1147)
T ss_pred EeeHHHhCcEee------------ecCCCCCCCccccCCc------HHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 369999999999 9998889999999999 9999988888 8889999999999999
Q ss_pred cccccccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC------CcEEEEcCCCchHHHHHHHHHH
Q 008602 96 VKKSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN------HDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 96 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~------~~~li~~~TGsGKT~~~~~~i~ 169 (560)
.++..++...+... ....+....++| .||++|.+||+.++.+ +|+|+||+||+|||++|+.+++
T Consensus 574 ~r~~~~~~~~~~~~---------~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~ 643 (1147)
T PRK10689 574 QRAAKEGFAFKHDR---------EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 (1147)
T ss_pred HHhhccCCCCCCCH---------HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHH
Confidence 88887775544332 334555889999 8999999999999997 8999999999999999999998
Q ss_pred hhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHH---HHHHcCCCcE
Q 008602 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE---EALRKNKPAI 246 (560)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~I 246 (560)
..+ ..|.+++|++||++||.|+++.|++++...+.. +..+.++.....+. ..+.++.++|
T Consensus 644 ~~~----------------~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~-i~~l~g~~s~~e~~~il~~l~~g~~dI 706 (1147)
T PRK10689 644 LAV----------------ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR-IEMLSRFRSAKEQTQILAEAAEGKIDI 706 (1147)
T ss_pred HHH----------------HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCce-EEEEECCCCHHHHHHHHHHHHhCCCCE
Confidence 877 457889999999999999999999988776543 55566665555444 3455678999
Q ss_pred EEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC
Q 008602 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326 (560)
Q Consensus 247 lI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~ 326 (560)
+||||+.+. ..+.++++++|||||+|++ +..+.+. +..+ ..++|+++||||++
T Consensus 707 VVgTp~lL~-----~~v~~~~L~lLVIDEahrf-G~~~~e~----lk~l-----------------~~~~qvLl~SATpi 759 (1147)
T PRK10689 707 LIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF-GVRHKER----IKAM-----------------RADVDILTLTATPI 759 (1147)
T ss_pred EEECHHHHh-----CCCCHhhCCEEEEechhhc-chhHHHH----HHhc-----------------CCCCcEEEEcCCCC
Confidence 999997653 3567889999999999995 4443333 2333 26789999999999
Q ss_pred hHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHH
Q 008602 327 FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406 (560)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 406 (560)
+++..++..++.++..+..++.... .+.++............+..
T Consensus 760 prtl~l~~~gl~d~~~I~~~p~~r~-----------------------------------~v~~~~~~~~~~~~k~~il~ 804 (1147)
T PRK10689 760 PRTLNMAMSGMRDLSIIATPPARRL-----------------------------------AVKTFVREYDSLVVREAILR 804 (1147)
T ss_pred HHHHHHHHhhCCCcEEEecCCCCCC-----------------------------------CceEEEEecCcHHHHHHHHH
Confidence 9999999888888887764321100 12222222111111122222
Q ss_pred HHHhcCCCeEEEEEcChhhHHHHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCE
Q 008602 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484 (560)
Q Consensus 407 ~~~~~~~~~~iif~~~~~~~~~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~ 484 (560)
.+ ..+++++||||++..++.++..|.+. ++++..+||+|++.+|++++.+|++|+++|||||+++++|||+|++++
T Consensus 805 el--~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 805 EI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred HH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 22 24789999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred EEEccCC-CChhhhHhhhccccCCCCcceEEEEecCc
Q 008602 485 VVNLDLP-TDSIHYAHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 485 VI~~~~p-~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
||..+.+ .+..+|+||+||+||.|+.|+||+++++.
T Consensus 883 VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred EEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 9966553 46778999999999999999999998654
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-54 Score=399.18 Aligned_cols=371 Identities=35% Similarity=0.591 Sum_probs=335.5
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
.+|++++|++++++.+..+||..|+.+|++||..+..|.|+.+.+++|+|||.+|..+++..+.. ..
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-------------~~ 92 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-------------SV 92 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-------------ch
Confidence 36999999999999999999999999999999999999999999999999999999999998722 24
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
...+|++++||++||.|....+..+... ....++.+.||.+...+...+....+.|+++||+++.+++....+..+.+.
T Consensus 93 ke~qalilaPtreLa~qi~~v~~~lg~~-~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iK 171 (397)
T KOG0327|consen 93 KETQALILAPTRELAQQIQKVVRALGDH-MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIK 171 (397)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhhcc-cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccccccccee
Confidence 5678999999999999999777665444 344577899999998888888887789999999999999999888888899
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
++|+||+|.|++.+|.+++..++++++ ++.|++++|||.++++....+.|+++|..+..+...
T Consensus 172 mfvlDEaDEmLs~gfkdqI~~if~~lp-----------------~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ 234 (397)
T KOG0327|consen 172 MFVLDEADEMLSRGFKDQIYDIFQELP-----------------SDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE 234 (397)
T ss_pred EEeecchHhhhccchHHHHHHHHHHcC-----------------cchhheeecccCcHHHHHHHHHhccCceEEEecchh
Confidence 999999999999999999999999985 778999999999999999999999999998754321
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~ 429 (560)
.....+++++.......|...|.++.+ +-.+.++|||+...+..+
T Consensus 235 ---------------------------------ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l 279 (397)
T KOG0327|consen 235 ---------------------------------LTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNL 279 (397)
T ss_pred ---------------------------------hhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHH
Confidence 112356666666666669999988888 578999999999999999
Q ss_pred HHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCC
Q 008602 430 VFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGR 509 (560)
Q Consensus 430 ~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 509 (560)
...|...+..+..+||+|.+.+|..+++.|+.|..+|||.|+.+++|+|+..+..||+|+.|....+|+||+||+||.|+
T Consensus 280 ~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~gr 359 (397)
T KOG0327|consen 280 TDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGR 359 (397)
T ss_pred HHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCccHHHHHHHHHHhCCCccccccCCCce
Q 008602 510 RGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRL 546 (560)
Q Consensus 510 ~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~ 546 (560)
+|.++.+++..|.+.+.+++++++++++++++...++
T Consensus 360 kg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l 396 (397)
T KOG0327|consen 360 KGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADL 396 (397)
T ss_pred CceeeeeehHhhHHHHHhHHHhcCCcceecccchhhc
Confidence 9999999999999999999999999999999876554
No 33
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-53 Score=391.48 Aligned_cols=373 Identities=28% Similarity=0.455 Sum_probs=313.6
Q ss_pred ccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcC
Q 008602 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDK 178 (560)
Q Consensus 101 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~ 178 (560)
..+.+-++..+|+++.|.|++++.+..++|..|+.+|..|+|.++.. ++.|..+..|+|||.+|.+.++..+..
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~---- 156 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP---- 156 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc----
Confidence 35566688899999999999999999999999999999999999986 789999999999999999999998833
Q ss_pred CCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHH
Q 008602 179 SSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEIS 258 (560)
Q Consensus 179 ~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l 258 (560)
...-|+++||+|||+||.|+.+.+.+.-+.. .....+.+.+.....- .. -..+|+|+||+.+.++.
T Consensus 157 ---------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG-~~---i~eqIviGTPGtv~Dlm 222 (477)
T KOG0332|consen 157 ---------DVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG-NK---LTEQIVIGTPGTVLDLM 222 (477)
T ss_pred ---------cccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC-Cc---chhheeeCCCccHHHHH
Confidence 2456889999999999999999998864433 3345555555411110 00 02359999999999987
Q ss_pred Hc-CCccCCCeeEEEEechhhhhcc-chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc
Q 008602 259 AA-GKLHTHGCRFLVLDEIDELLSF-NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336 (560)
Q Consensus 259 ~~-~~~~~~~l~llIiDE~h~l~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 336 (560)
.. ..+.+..++.+|+||||.|++. +|..+-..|...++ .+.|+++||||+...+..|+...
T Consensus 223 ~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP-----------------~~~QllLFSATf~e~V~~Fa~ki 285 (477)
T KOG0332|consen 223 LKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP-----------------RNQQLLLFSATFVEKVAAFALKI 285 (477)
T ss_pred HHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcC-----------------CcceEEeeechhHHHHHHHHHHh
Confidence 76 7788899999999999998876 68888888887774 57899999999999999999999
Q ss_pred CCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEE-echhhHHHHHHHHHHhcCCCe
Q 008602 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV-TKLQHKVDTLRRCVHALDAQT 415 (560)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~l~~~~~~~~~~~ 415 (560)
..++..+...+- ...+ ..++++|.. ....+|.+.|..+.....-++
T Consensus 286 vpn~n~i~Lk~e--------------------------------el~L-~~IkQlyv~C~~~~~K~~~l~~lyg~~tigq 332 (477)
T KOG0332|consen 286 VPNANVIILKRE--------------------------------ELAL-DNIKQLYVLCACRDDKYQALVNLYGLLTIGQ 332 (477)
T ss_pred cCCCceeeeehh--------------------------------hccc-cchhhheeeccchhhHHHHHHHHHhhhhhhh
Confidence 998877653321 1112 234455554 456778999988877777799
Q ss_pred EEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC---
Q 008602 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT--- 492 (560)
Q Consensus 416 ~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~--- 492 (560)
.||||.+.+.+..++..+.+.|..+..+||+|...+|..++++|+.|..+|||+|++++||||++.|++|||||+|.
T Consensus 333 siIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~ 412 (477)
T KOG0332|consen 333 SIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYT 412 (477)
T ss_pred eEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ---ChhhhHhhhccccCCCCcceEEEEecCc-cHHHHHHHHHHhCCCcccccc
Q 008602 493 ---DSIHYAHRAGRTGRLGRRGTVVSICEEP-EVFVVKKMQKQLAVPIQACEF 541 (560)
Q Consensus 493 ---s~~~y~Qr~GR~gR~g~~g~~~~l~~~~-e~~~~~~l~~~l~~~~~~~~~ 541 (560)
+++.|.||+||+||.|++|.++.|++.. ....+..|+++++..+....-
T Consensus 413 ~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 413 GEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred CCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 6789999999999999999999999766 456778999999887776554
No 34
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-53 Score=441.31 Aligned_cols=375 Identities=33% Similarity=0.518 Sum_probs=333.1
Q ss_pred cccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCC
Q 008602 100 LEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKS 179 (560)
Q Consensus 100 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~ 179 (560)
+.+...|.|..+|.+.+++..++..++++||..|+|+|.+|||+|++|+|+|.+|.||||||++|++|++.++...+.
T Consensus 355 v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~-- 432 (997)
T KOG0334|consen 355 VKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP-- 432 (997)
T ss_pred eccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC--
Confidence 345678999999999999999999999999999999999999999999999999999999999999999988744332
Q ss_pred CCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHH
Q 008602 180 SNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA 259 (560)
Q Consensus 180 ~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~ 259 (560)
...+.||-+||++|||+||.|++++++.++...... +.+.+||.....+...+++| ..|+|||||++.+++-
T Consensus 433 ------~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir-~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~ 504 (997)
T KOG0334|consen 433 ------LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIR-VVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILC 504 (997)
T ss_pred ------hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCce-EEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHh
Confidence 223569999999999999999999999998875444 77899999999999999999 6799999999999766
Q ss_pred cCCc---cCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc
Q 008602 260 AGKL---HTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336 (560)
Q Consensus 260 ~~~~---~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 336 (560)
.+.. ++.++.++|+||+|+|++++|.++...|++++ ++.+|++++|||++..+..+++..
T Consensus 505 ~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl-----------------rpdrQtvlfSatfpr~m~~la~~v 567 (997)
T KOG0334|consen 505 ANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL-----------------RPDRQTVLFSATFPRSMEALARKV 567 (997)
T ss_pred hcCCccccccccceeeechhhhhheeccCcccchHHhhc-----------------chhhhhhhhhhhhhHHHHHHHHHh
Confidence 5443 55666799999999999999999998899988 489999999999999999999998
Q ss_pred CCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEec-hhhHHHHHHHHHHh-cCCC
Q 008602 337 GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK-LQHKVDTLRRCVHA-LDAQ 414 (560)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~~~~-~~~~ 414 (560)
++.|+.+..+. ...+...+.+.+.++. ...|...|..++.. .+.+
T Consensus 568 l~~Pveiiv~~---------------------------------~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~ 614 (997)
T KOG0334|consen 568 LKKPVEIIVGG---------------------------------RSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDG 614 (997)
T ss_pred hcCCeeEEEcc---------------------------------ceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcC
Confidence 88887765331 1122334555556666 88899999898876 5689
Q ss_pred eEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCCh
Q 008602 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDS 494 (560)
Q Consensus 415 ~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~ 494 (560)
++||||.+...+..+.+.|.+.++.+..+||+.++.+|..++++|++|.+++||||+++++|+|+++..+|||||+|..+
T Consensus 615 ~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~ 694 (997)
T KOG0334|consen 615 KTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHY 694 (997)
T ss_pred CEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCC
Q 008602 495 IHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534 (560)
Q Consensus 495 ~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~ 534 (560)
++|+||.||+||.|++|.||+|+++.+......|.+.+..
T Consensus 695 edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~ 734 (997)
T KOG0334|consen 695 EDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALEL 734 (997)
T ss_pred HHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999988733
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-52 Score=394.92 Aligned_cols=382 Identities=28% Similarity=0.413 Sum_probs=315.8
Q ss_pred CcccCCCCHHHH----------HHHHhCCCCCChHHHHHHHhhhhc---------CCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 111 SFLELGLPPLLL----------ERLEREGFNVPTEVQSAAIPSILK---------NHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 111 ~f~~~~l~~~l~----------~~l~~~~~~~~~~~Q~~ai~~i~~---------~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
.|+.++++..+. ..+.++++...+|+|...+|.++. .+|+.|.||||||||++|.+||.+.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 356666655543 448888999999999999999864 3799999999999999999999999
Q ss_pred hCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCC----cEE
Q 008602 172 VGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKP----AIV 247 (560)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~Il 247 (560)
+... .-...+++|++||++|+.|+++.|.++..+.+.. |+.+.|..+...+...+.+-.+ ||+
T Consensus 208 L~~R------------~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~-V~~~sgq~sl~~E~~qL~~~~~~~~~DIl 274 (620)
T KOG0350|consen 208 LSSR------------PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLA-VCSLSGQNSLEDEARQLASDPPECRIDIL 274 (620)
T ss_pred HccC------------CccceEEEEEeeHHHHHHHHHHHHHHhccCCceE-EEecccccchHHHHHHHhcCCCccccceE
Confidence 8432 2345889999999999999999999998776655 8888898888888888888777 999
Q ss_pred EeCchHHHHHHH-cCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCC-CCC-----------chhhhh---
Q 008602 248 VGTPGRIAEISA-AGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGAN-PRE-----------PKSALA--- 311 (560)
Q Consensus 248 I~Tp~~l~~~l~-~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~-~~~-----------~~~~~~--- 311 (560)
|+|||+|.+.+. ...+.+++++++||||||||++..|..++..++..+....... ... ......
T Consensus 275 VaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~ 354 (620)
T KOG0350|consen 275 VATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKL 354 (620)
T ss_pred EcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhc
Confidence 999999999887 5568899999999999999999999999988888776541110 000 000000
Q ss_pred --hccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccc
Q 008602 312 --MRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALK 389 (560)
Q Consensus 312 --~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (560)
..+....+++|||++..-..+...-++.|........ .....+++..+.
T Consensus 355 ~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~-----------------------------~~~ryslp~~l~ 405 (620)
T KOG0350|consen 355 GKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP-----------------------------LIGRYSLPSSLS 405 (620)
T ss_pred CCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc-----------------------------cceeeecChhhh
Confidence 1234558889999987777777777777754432211 112345677888
Q ss_pred eEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHH-H---CCCceeeccCCCCHHHHHHHHHHhhcCCce
Q 008602 390 HYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLE-A---RGMKAAELHGDLGKLARSTTLKKFKNGEVR 465 (560)
Q Consensus 390 ~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~-~---~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~ 465 (560)
++.+.+....+...+..+++.....++|+|+++...+.+++..|+ . ...++-.+.|+++.+.|.+.++.|..|+++
T Consensus 406 ~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~ 485 (620)
T KOG0350|consen 406 HRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN 485 (620)
T ss_pred hceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce
Confidence 889998888888899999999889999999999999999999987 2 356777899999999999999999999999
Q ss_pred EEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCC
Q 008602 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534 (560)
Q Consensus 466 iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~ 534 (560)
+|||||+++||+|+.+++.||+||+|.+...|+||+||++|+|+.|+||.+.+..+.+.+.++.+..+.
T Consensus 486 vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 486 VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999888888877555
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.9e-51 Score=438.66 Aligned_cols=387 Identities=20% Similarity=0.246 Sum_probs=283.9
Q ss_pred CcccCCcccC--CCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCC
Q 008602 106 PFAANSFLEL--GLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGN 183 (560)
Q Consensus 106 ~~~~~~f~~~--~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~ 183 (560)
|.....|.++ .+++.+.+.+.+.||..||++|.++|+.+++|+|+++++|||||||++|++|++..+..
T Consensus 8 p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~--------- 78 (742)
T TIGR03817 8 PARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD--------- 78 (742)
T ss_pred CCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh---------
Confidence 3333344444 38999999999999999999999999999999999999999999999999999998832
Q ss_pred CCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc-C-
Q 008602 184 GESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA-G- 261 (560)
Q Consensus 184 ~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~-~- 261 (560)
..+.++||++||++||.|+++.++++. . ....+..+.|+.. ..+...+.. .++|+|+||++|...+.. .
T Consensus 79 -----~~~~~aL~l~PtraLa~q~~~~l~~l~-~-~~i~v~~~~Gdt~-~~~r~~i~~-~~~IivtTPd~L~~~~L~~~~ 149 (742)
T TIGR03817 79 -----DPRATALYLAPTKALAADQLRAVRELT-L-RGVRPATYDGDTP-TEERRWARE-HARYVLTNPDMLHRGILPSHA 149 (742)
T ss_pred -----CCCcEEEEEcChHHHHHHHHHHHHHhc-c-CCeEEEEEeCCCC-HHHHHHHhc-CCCEEEEChHHHHHhhccchh
Confidence 235789999999999999999999875 2 2233544555444 455555554 478999999999752221 1
Q ss_pred --CccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCC
Q 008602 262 --KLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339 (560)
Q Consensus 262 --~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~ 339 (560)
...++++++|||||+|.+.+ .|+..+..+++++.+..... ....|++++|||+++... ++..+...
T Consensus 150 ~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~----------g~~~q~i~~SATi~n~~~-~~~~l~g~ 217 (742)
T TIGR03817 150 RWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARY----------GASPVFVLASATTADPAA-AASRLIGA 217 (742)
T ss_pred HHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhc----------CCCCEEEEEecCCCCHHH-HHHHHcCC
Confidence 12378999999999999866 57777777776664322111 246799999999987765 45555555
Q ss_pred CeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEE
Q 008602 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAF 419 (560)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif 419 (560)
|..+...+..+....... .+..... . ................+...+..++.. +.++|||
T Consensus 218 ~~~~i~~~~~~~~~~~~~---~~~p~~~-------------~--~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF 277 (742)
T TIGR03817 218 PVVAVTEDGSPRGARTVA---LWEPPLT-------------E--LTGENGAPVRRSASAEAADLLADLVAE--GARTLTF 277 (742)
T ss_pred CeEEECCCCCCcCceEEE---EecCCcc-------------c--cccccccccccchHHHHHHHHHHHHHC--CCCEEEE
Confidence 544432221111000000 0000000 0 000000000001122344555555554 6899999
Q ss_pred EcChhhHHHHHHHHHHC--------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCC
Q 008602 420 MNNTRQLKDAVFKLEAR--------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP 491 (560)
Q Consensus 420 ~~~~~~~~~~~~~L~~~--------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p 491 (560)
|++++.++.++..|++. +.++..+||+|++++|.+++++|++|++++||||+++++|||||++++||+|+.|
T Consensus 278 ~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P 357 (742)
T TIGR03817 278 VRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFP 357 (742)
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCC
Confidence 99999999999988763 5678899999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhccccCCCCcceEEEEec--CccHHHHHHHHHHhCCCccccccC
Q 008602 492 TDSIHYAHRAGRTGRLGRRGTVVSICE--EPEVFVVKKMQKQLAVPIQACEFT 542 (560)
Q Consensus 492 ~s~~~y~Qr~GR~gR~g~~g~~~~l~~--~~e~~~~~~l~~~l~~~~~~~~~~ 542 (560)
.+..+|+||+||+||.|+.|.+++++. +.|...+...++.++.+++.....
T Consensus 358 ~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~~ 410 (742)
T TIGR03817 358 GTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVFD 410 (742)
T ss_pred CCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccceeC
Confidence 999999999999999999999999986 457778888888888887765443
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.7e-52 Score=405.77 Aligned_cols=376 Identities=28% Similarity=0.472 Sum_probs=326.5
Q ss_pred ccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCC
Q 008602 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180 (560)
Q Consensus 101 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~ 180 (560)
.++..+.....|+++.|..+++..|.+.+|..||++|..|||.++.++|.||.+..|+|||++|...+++.+..
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------ 89 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------ 89 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------
Confidence 44555666677999999999999999999999999999999999999999999999999999999998887732
Q ss_pred CCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc
Q 008602 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA 260 (560)
Q Consensus 181 ~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~ 260 (560)
+...++++|++|||++|.|+.+.+..++..+.+..++.++||........+++... |+|||||++..+...
T Consensus 90 -------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~r--IvIGtPGRi~qL~el 160 (980)
T KOG4284|consen 90 -------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTR--IVIGTPGRIAQLVEL 160 (980)
T ss_pred -------ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhce--EEecCchHHHHHHHh
Confidence 35578899999999999999999999988888888999999999999888887754 999999999999999
Q ss_pred CCccCCCeeEEEEechhhhhc-cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCC
Q 008602 261 GKLHTHGCRFLVLDEIDELLS-FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339 (560)
Q Consensus 261 ~~~~~~~l~llIiDE~h~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~ 339 (560)
+.++.+.++++|+||||.+.+ ..|.+.+..|++.++ ..+|++.+|||.+..+.+.+..++++
T Consensus 161 ~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP-----------------~~rQv~a~SATYp~nLdn~Lsk~mrd 223 (980)
T KOG4284|consen 161 GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP-----------------QIRQVAAFSATYPRNLDNLLSKFMRD 223 (980)
T ss_pred cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc-----------------hhheeeEEeccCchhHHHHHHHHhcc
Confidence 999999999999999999888 579999999999885 67899999999999999999999999
Q ss_pred CeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEec--------hhhHHHHHHHHHHhc
Q 008602 340 PLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK--------LQHKVDTLRRCVHAL 411 (560)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~k~~~l~~~~~~~ 411 (560)
|.++......+. --++++|+.... ...|+..|..++...
T Consensus 224 p~lVr~n~~d~~---------------------------------L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~i 270 (980)
T KOG4284|consen 224 PALVRFNADDVQ---------------------------------LFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI 270 (980)
T ss_pred cceeecccCCce---------------------------------eechhheeeeccCCcchHHHHHHHHHHHHHHHhhC
Confidence 999874332111 113455554332 234777888888888
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP 491 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p 491 (560)
+-.+.||||+....++.++..|...|+.+.++.|.|++.+|..+++.+++-.++|||+|+..+||||-|+|++|||.|+|
T Consensus 271 py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p 350 (980)
T KOG4284|consen 271 PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAP 350 (980)
T ss_pred chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhccccCCCCcceEEEEecCccH-HHHHHHHHHhCCCcccccc
Q 008602 492 TDSIHYAHRAGRTGRLGRRGTVVSICEEPEV-FVVKKMQKQLAVPIQACEF 541 (560)
Q Consensus 492 ~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~-~~~~~l~~~l~~~~~~~~~ 541 (560)
.+...|.||+|||||.|..|.+++|+...+. .-+..+....+..+....+
T Consensus 351 ~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ria~~~~~~~~ 401 (980)
T KOG4284|consen 351 ADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRIAVTVKRVVE 401 (980)
T ss_pred cchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHHhhhheeeec
Confidence 9999999999999999999999999876543 4444443334444443333
No 38
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-50 Score=377.53 Aligned_cols=364 Identities=29% Similarity=0.483 Sum_probs=327.1
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
..|..++|+....+++.+.||+.|||+|+..+|.+++++|++..+-||||||.+|++|+++.+.. -..
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~------------~s~ 88 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKS------------HSQ 88 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhh------------ccc
Confidence 45999999999999999999999999999999999999999999999999999999999999832 125
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.|.++++++||++||.|..+.++++....... ..+++||....+++..+.. +|||+++||+++.++.....+.++.+.
T Consensus 89 ~g~RalilsptreLa~qtlkvvkdlgrgt~lr-~s~~~ggD~~eeqf~~l~~-npDii~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 89 TGLRALILSPTRELALQTLKVVKDLGRGTKLR-QSLLVGGDSIEEQFILLNE-NPDIIIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred cccceeeccCcHHHHHHHHHHHHHhccccchh-hhhhcccchHHHHHHHhcc-CCCEEEecCceeeeeehheecccccee
Confidence 68899999999999999999998875555443 6678999999999888754 579999999999998887788999999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
|+|+||+|+++.++|.+++.+++.+++ ..+|.++||||++..+..+++..+.+|..+..+..
T Consensus 167 yVVfdEadrlfemgfqeql~e~l~rl~-----------------~~~QTllfSatlp~~lv~fakaGl~~p~lVRldve- 228 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGFQEQLHEILSRLP-----------------ESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE- 228 (529)
T ss_pred eeeehhhhHHHhhhhHHHHHHHHHhCC-----------------CcceEEEEeccCchhhHHHHHccCCCCceEEeehh-
Confidence 999999999999999999999999985 66799999999999999999999999998863221
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhc-CCCeEEEEEcChhhHHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL-DAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~iif~~~~~~~~~ 428 (560)
..+...++..++......|...|..++... ...++++|+.+..+++.
T Consensus 229 --------------------------------tkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~ 276 (529)
T KOG0337|consen 229 --------------------------------TKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEY 276 (529)
T ss_pred --------------------------------hhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHH
Confidence 123334566777788888888888888763 44689999999999999
Q ss_pred HHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCC
Q 008602 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG 508 (560)
Q Consensus 429 ~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 508 (560)
+...|+..|+.+..++|+|++..|..-+.+|..++..+||.|+++++|+|||-.+.||+||+|.+..-|.||+||+.|.|
T Consensus 277 ~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~arag 356 (529)
T KOG0337|consen 277 VRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAG 356 (529)
T ss_pred HHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEecCccHHHHHHHHHHhCCCcc
Q 008602 509 RRGTVVSICEEPEVFVVKKMQKQLAVPIQ 537 (560)
Q Consensus 509 ~~g~~~~l~~~~e~~~~~~l~~~l~~~~~ 537 (560)
+.|.+|.++.++|.+++-.+.-.++.++.
T Consensus 357 rtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 357 RTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ccceEEEEEecccchhhhhhhhhcCCcee
Confidence 99999999999999999999999988654
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.6e-48 Score=411.84 Aligned_cols=342 Identities=19% Similarity=0.229 Sum_probs=261.3
Q ss_pred cCCCCHHHHHHHH-hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCe
Q 008602 114 ELGLPPLLLERLE-REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192 (560)
Q Consensus 114 ~~~l~~~l~~~l~-~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 192 (560)
.++.+..+...+. -+||..++|.|.++|+.++.|+|+++++|||+|||++|++|++... .
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~-------------------G 501 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP-------------------G 501 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC-------------------C
Confidence 4556666665555 4699999999999999999999999999999999999999998642 3
Q ss_pred eEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHc-----CCCcEEEeCchHHHH---HHHcC-Cc
Q 008602 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRK-----NKPAIVVGTPGRIAE---ISAAG-KL 263 (560)
Q Consensus 193 ~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~IlI~Tp~~l~~---~l~~~-~~ 263 (560)
.+|||+|+++|+.++...+... ......+.++.....+...+.. +.++|+|+||++|.. ++... .+
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 5999999999998766666542 2335567777776666544433 678999999999853 12110 11
Q ss_pred -cCCCeeEEEEechhhhhccc--hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCC--
Q 008602 264 -HTHGCRFLVLDEIDELLSFN--FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH-- 338 (560)
Q Consensus 264 -~~~~l~llIiDE~h~l~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-- 338 (560)
....+.+|||||||++.+++ |+..+..+-.... . -+..+++++|||+++.+.......+.
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~-~--------------fp~vPilALTATAT~~V~eDI~~~L~l~ 641 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQ-K--------------FPNIPVLALTATATASVKEDVVQALGLV 641 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHH-h--------------CCCCCeEEEEecCCHHHHHHHHHHcCCC
Confidence 23458899999999999886 7777765421111 0 15678999999999988876554432
Q ss_pred CCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh-cCCCeEE
Q 008602 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA-LDAQTVI 417 (560)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~~~~~~i 417 (560)
++.++... +......+............+..++.. ..+.+.|
T Consensus 642 ~~~vfr~S-------------------------------------f~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgI 684 (1195)
T PLN03137 642 NCVVFRQS-------------------------------------FNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGI 684 (1195)
T ss_pred CcEEeecc-------------------------------------cCccceEEEEeccchhHHHHHHHHHHhcccCCCce
Confidence 22222110 001111222233222233455555543 3367899
Q ss_pred EEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhh
Q 008602 418 AFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497 (560)
Q Consensus 418 if~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y 497 (560)
|||+++++++.++..|...|+.+..+||+|++.+|..++++|.+|+++|||||+++++|||+|+|++||||++|.|++.|
T Consensus 685 IYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsY 764 (1195)
T PLN03137 685 IYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY 764 (1195)
T ss_pred eEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCCCcceEEEEecCccHHHHHHHHHH
Q 008602 498 AHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 498 ~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
+||+|||||.|..|.|++||+..|...+..+...
T Consensus 765 yQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 765 HQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred HhhhcccCCCCCCceEEEEecHHHHHHHHHHHhc
Confidence 9999999999999999999998888777776653
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.2e-48 Score=399.92 Aligned_cols=329 Identities=19% Similarity=0.263 Sum_probs=253.2
Q ss_pred HhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHH
Q 008602 126 EREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205 (560)
Q Consensus 126 ~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~ 205 (560)
..+||..++|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+||++||++|+.
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-------------------~~~~lVi~P~~~L~~ 65 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-------------------DGITLVISPLISLME 65 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-------------------CCcEEEEecHHHHHH
Confidence 3569999999999999999999999999999999999999998753 234899999999999
Q ss_pred HHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHH-HcCCc-cCCCeeEEEEechhhhh
Q 008602 206 QIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEIS-AAGKL-HTHGCRFLVLDEIDELL 280 (560)
Q Consensus 206 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l-~~~~~-~~~~l~llIiDE~h~l~ 280 (560)
|+++.+... + .....+.++..... ....+..+.++|+++||+++.... ....+ ...++++|||||||++.
T Consensus 66 dq~~~l~~~----g-i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~ 140 (470)
T TIGR00614 66 DQVLQLKAS----G-IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS 140 (470)
T ss_pred HHHHHHHHc----C-CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC
Confidence 999998763 1 22344444443332 234556778899999999975421 11112 46789999999999988
Q ss_pred ccc--hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcC--CCCeEEeeccccccCCCCC
Q 008602 281 SFN--FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG--HDPLLVQAKNVIPLESMPA 356 (560)
Q Consensus 281 ~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 356 (560)
+++ |...+..+..... ..++.+++++|||+++.+.......+ .+|.......
T Consensus 141 ~~g~~fr~~~~~l~~l~~---------------~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~--------- 196 (470)
T TIGR00614 141 QWGHDFRPDYKALGSLKQ---------------KFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF--------- 196 (470)
T ss_pred ccccccHHHHHHHHHHHH---------------HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---------
Confidence 875 5666655432211 12567899999999988776655443 3333332110
Q ss_pred CCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHH-hcCCCeEEEEEcChhhHHHHHHHHHH
Q 008602 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH-ALDAQTVIAFMNNTRQLKDAVFKLEA 435 (560)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~-~~~~~~~iif~~~~~~~~~~~~~L~~ 435 (560)
......+............+...+. ...+..+||||+++++++.++..|.+
T Consensus 197 ----------------------------~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~ 248 (470)
T TIGR00614 197 ----------------------------DRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQN 248 (470)
T ss_pred ----------------------------CCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHh
Confidence 0011122222222234455556555 44566779999999999999999999
Q ss_pred CCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEE
Q 008602 436 RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515 (560)
Q Consensus 436 ~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~ 515 (560)
.++.+..+||+|++++|..++++|.+|+++|||||+++++|||+|++++||||++|.|...|+||+||+||.|..|.|++
T Consensus 249 ~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~ 328 (470)
T TIGR00614 249 LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHL 328 (470)
T ss_pred cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccHHHHHHHHH
Q 008602 516 ICEEPEVFVVKKMQK 530 (560)
Q Consensus 516 l~~~~e~~~~~~l~~ 530 (560)
++++.|...++.+..
T Consensus 329 ~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 329 FYAPADINRLRRLLM 343 (470)
T ss_pred EechhHHHHHHHHHh
Confidence 999988877666644
No 41
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-49 Score=384.51 Aligned_cols=374 Identities=29% Similarity=0.415 Sum_probs=310.1
Q ss_pred cccccCCcccCCccc----CCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCC
Q 008602 100 LEIESAPFAANSFLE----LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPL 175 (560)
Q Consensus 100 ~~~~~~~~~~~~f~~----~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~ 175 (560)
..+...|.+..+|.+ +..++.+++.+...+|..|+|+|.+|+|.++.+++++.|+|||+|||++|.+|++.++...
T Consensus 122 v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~ 201 (593)
T KOG0344|consen 122 VDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDL 201 (593)
T ss_pred ccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHh
Confidence 456677999999997 5688999999999999999999999999999999999999999999999999999998544
Q ss_pred CcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHh--CCCCCceEEEEecCCChhHH-HHHHHcCCCcEEEeCch
Q 008602 176 KDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL--GPSDKKAVQQLVGGANRSRQ-EEALRKNKPAIVVGTPG 252 (560)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~IlI~Tp~ 252 (560)
.. .+...|.+++|+.||++||.|+++++.++. ......... + .......+ ...+-....+|+|+||-
T Consensus 202 ~~--------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~-~-~~~~~~~qk~a~~~~~k~dili~TP~ 271 (593)
T KOG0344|consen 202 SQ--------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQ-F-SKPAYPSQKPAFLSDEKYDILISTPM 271 (593)
T ss_pred hc--------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhh-c-ccccchhhccchhHHHHHHHHhcCHH
Confidence 32 123568999999999999999999999986 333322111 1 11111111 11111224579999999
Q ss_pred HHHHHHHcCC--ccCCCeeEEEEechhhhhcc-chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHH
Q 008602 253 RIAEISAAGK--LHTHGCRFLVLDEIDELLSF-NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSV 329 (560)
Q Consensus 253 ~l~~~l~~~~--~~~~~l~llIiDE~h~l~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~ 329 (560)
++...+..+. ++++.+.++|+||+|++++. .|..++..|+..+. .+...+-+||||.+..+
T Consensus 272 ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~----------------s~~i~~a~FSat~~~~V 335 (593)
T KOG0344|consen 272 RIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQ----------------SPDIRVALFSATISVYV 335 (593)
T ss_pred HHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhc----------------CcchhhhhhhccccHHH
Confidence 9999888776 68899999999999999999 89999999998885 36778899999999999
Q ss_pred HHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHH
Q 008602 330 IRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH 409 (560)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~ 409 (560)
++++.....++..+..+..... .....+..........|+.++.+++.
T Consensus 336 EE~~~~i~~~~~~vivg~~~sa--------------------------------~~~V~QelvF~gse~~K~lA~rq~v~ 383 (593)
T KOG0344|consen 336 EEWAELIKSDLKRVIVGLRNSA--------------------------------NETVDQELVFCGSEKGKLLALRQLVA 383 (593)
T ss_pred HHHHHHhhccceeEEEecchhH--------------------------------hhhhhhhheeeecchhHHHHHHHHHh
Confidence 9999998888877764432110 00112223445556678888999998
Q ss_pred hcCCCeEEEEEcChhhHHHHHHHH-HHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEc
Q 008602 410 ALDAQTVIAFMNNTRQLKDAVFKL-EARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488 (560)
Q Consensus 410 ~~~~~~~iif~~~~~~~~~~~~~L-~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~ 488 (560)
..-..+++||+.+.+.+.++...| .-.++++..+||..++.+|.+++++|+.|+++||+||++++||+|+.+++.||||
T Consensus 384 ~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIny 463 (593)
T KOG0344|consen 384 SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINY 463 (593)
T ss_pred ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEec
Confidence 877889999999999999999999 5568999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHH
Q 008602 489 DLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 489 ~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
|.|.+...|+||+||+||+|+.|.+|+||++.|...++.+.+.
T Consensus 464 D~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~ 506 (593)
T KOG0344|consen 464 DFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEV 506 (593)
T ss_pred CCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHH
Confidence 9999999999999999999999999999999998887766544
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.8e-46 Score=398.11 Aligned_cols=331 Identities=20% Similarity=0.271 Sum_probs=253.2
Q ss_pred HHHHHH-hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc
Q 008602 121 LLERLE-REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199 (560)
Q Consensus 121 l~~~l~-~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 199 (560)
..+.++ .+||..++|+|.++++.+++|+|+++++|||+|||++|++|++..- ..+||++|
T Consensus 13 ~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~-------------------g~tlVisP 73 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLD-------------------GLTLVVSP 73 (607)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcC-------------------CCEEEEec
Confidence 334444 3699999999999999999999999999999999999999998542 24899999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHH---HHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEech
Q 008602 200 SRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQ---EEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276 (560)
Q Consensus 200 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~ 276 (560)
+++|+.|+.+.+... +. ....+.++...... ...+..+..+++++||+++........+...++++||||||
T Consensus 74 l~sL~~dqv~~l~~~----gi-~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEa 148 (607)
T PRK11057 74 LISLMKDQVDQLLAN----GV-AAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEA 148 (607)
T ss_pred HHHHHHHHHHHHHHc----CC-cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCc
Confidence 999999999998764 22 23444444444332 34456788899999999987422222333457899999999
Q ss_pred hhhhccc--hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc--CCCCeEEeeccccccC
Q 008602 277 DELLSFN--FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW--GHDPLLVQAKNVIPLE 352 (560)
Q Consensus 277 h~l~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 352 (560)
|++.+++ |...+..+-.... ..+..+++++|||++..+....... +.+|........
T Consensus 149 H~i~~~G~~fr~~y~~L~~l~~---------------~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~---- 209 (607)
T PRK11057 149 HCISQWGHDFRPEYAALGQLRQ---------------RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD---- 209 (607)
T ss_pred cccccccCcccHHHHHHHHHHH---------------hCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCC----
Confidence 9988875 5555544422111 0156789999999998776544332 334443321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHH
Q 008602 353 SMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFK 432 (560)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~ 432 (560)
.....+. ..........+...+....+.++||||+++++++.++..
T Consensus 210 ---------------------------------r~nl~~~-v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~ 255 (607)
T PRK11057 210 ---------------------------------RPNIRYT-LVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAAR 255 (607)
T ss_pred ---------------------------------CCcceee-eeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHH
Confidence 0000111 111223445566666666788999999999999999999
Q ss_pred HHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcce
Q 008602 433 LEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGT 512 (560)
Q Consensus 433 L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~ 512 (560)
|.+.++.+..+||+|++++|..++++|.+|+++|||||+++++|||+|+|++|||||+|.|...|+||+||+||.|.+|.
T Consensus 256 L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 256 LQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred HHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCccHHHHHHH
Q 008602 513 VVSICEEPEVFVVKKM 528 (560)
Q Consensus 513 ~~~l~~~~e~~~~~~l 528 (560)
|++|+++.|...++.+
T Consensus 336 ~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 336 AMLFYDPADMAWLRRC 351 (607)
T ss_pred EEEEeCHHHHHHHHHH
Confidence 9999998886655444
No 43
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.6e-46 Score=398.39 Aligned_cols=316 Identities=20% Similarity=0.275 Sum_probs=243.0
Q ss_pred HHHHHHhCCCCCChHHHHHHHhhhhcC------CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeE
Q 008602 121 LLERLEREGFNVPTEVQSAAIPSILKN------HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194 (560)
Q Consensus 121 l~~~l~~~~~~~~~~~Q~~ai~~i~~~------~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 194 (560)
+.......+| +||++|.+|++.+.++ +++|++|+||||||++|++|++..+ ..|.++
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~----------------~~g~q~ 313 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI----------------EAGYQA 313 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH----------------HcCCeE
Confidence 3455667799 8999999999999987 5899999999999999999999988 457889
Q ss_pred EEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCCh---hHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEE
Q 008602 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANR---SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFL 271 (560)
Q Consensus 195 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ll 271 (560)
+|++||++||.|+++.+++++...+. .+..++|+... ..+...+.+|.++|+||||+.+.+ .+.+++++++
T Consensus 314 lilaPT~~LA~Q~~~~l~~l~~~~~i-~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lv 387 (681)
T PRK10917 314 ALMAPTEILAEQHYENLKKLLEPLGI-RVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLV 387 (681)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhcCc-EEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceE
Confidence 99999999999999999999876544 47778887764 344566778889999999998854 5668899999
Q ss_pred EEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccccc
Q 008602 272 VLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPL 351 (560)
Q Consensus 272 IiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (560)
||||+|++ +......+.. . ....++++||||+.++...+......+...+...+.
T Consensus 388 VIDE~Hrf-g~~qr~~l~~----~-----------------~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~--- 442 (681)
T PRK10917 388 IIDEQHRF-GVEQRLALRE----K-----------------GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP--- 442 (681)
T ss_pred EEechhhh-hHHHHHHHHh----c-----------------CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC---
Confidence 99999984 4333333221 1 134689999999998887766544334333321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEech-hhHHHHHHHHHHhcCCCeEEEEEcChh------
Q 008602 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKL-QHKVDTLRRCVHALDAQTVIAFMNNTR------ 424 (560)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~~~~~~~~~~iif~~~~~------ 424 (560)
-...+...+..... ....+.+.+.+ ..+.+++|||+.++
T Consensus 443 --------------------------------~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~ 488 (681)
T PRK10917 443 --------------------------------GRKPITTVVIPDSRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLD 488 (681)
T ss_pred --------------------------------CCCCcEEEEeCcccHHHHHHHHHHHH--HcCCcEEEEEcccccccchh
Confidence 00011122211111 11223333333 34789999999654
Q ss_pred --hHHHHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC-ChhhhHh
Q 008602 425 --QLKDAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT-DSIHYAH 499 (560)
Q Consensus 425 --~~~~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~-s~~~y~Q 499 (560)
.+..+++.|.+. ++++..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+++.|. +.+.|.|
T Consensus 489 ~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ 568 (681)
T PRK10917 489 LQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQ 568 (681)
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHH
Confidence 455667777765 47899999999999999999999999999999999999999999999999999997 5788999
Q ss_pred hhccccCCCCcceEEEEec
Q 008602 500 RAGRTGRLGRRGTVVSICE 518 (560)
Q Consensus 500 r~GR~gR~g~~g~~~~l~~ 518 (560)
|+||+||.|.+|+|+++++
T Consensus 569 ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 569 LRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred HhhcccCCCCceEEEEEEC
Confidence 9999999999999999995
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-45 Score=393.61 Aligned_cols=327 Identities=20% Similarity=0.289 Sum_probs=257.0
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
.+||..++|+|.++|+.+++|+|+++++|||+|||++|++|++..- ..++|++|+++|+.|
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~-------------------g~~lVisPl~sL~~d 68 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK-------------------GLTVVISPLISLMKD 68 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC-------------------CcEEEEcCCHHHHHH
Confidence 4799999999999999999999999999999999999999987532 248999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccc
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~ 283 (560)
+++.++.. + ..+..+.++..... ....+..+..+|+++||++|........+...++++|||||||++.+++
T Consensus 69 q~~~l~~~----g-i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 69 QVDQLRAA----G-VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred HHHHHHHc----C-CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 99999874 2 22444555544433 2445667888999999999965333334456789999999999988764
Q ss_pred --hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCC--CCeEEeeccccccCCCCCCCC
Q 008602 284 --FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH--DPLLVQAKNVIPLESMPATGP 359 (560)
Q Consensus 284 --~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 359 (560)
|...+..+...... .+..+++++|||+++.+......++. ++..+...
T Consensus 144 ~~frp~y~~l~~l~~~---------------~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~------------- 195 (591)
T TIGR01389 144 HDFRPEYQRLGSLAER---------------FPQVPRIALTATADAETRQDIRELLRLADANEFITS------------- 195 (591)
T ss_pred CccHHHHHHHHHHHHh---------------CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-------------
Confidence 66666655443321 13456999999999888776665543 22222100
Q ss_pred CCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCc
Q 008602 360 GNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439 (560)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~ 439 (560)
+..... .+.......+...+...+....+.++||||++++.++.++..|...+++
T Consensus 196 ------------------------~~r~nl-~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~ 250 (591)
T TIGR01389 196 ------------------------FDRPNL-RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGIS 250 (591)
T ss_pred ------------------------CCCCCc-EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCC
Confidence 000011 1222223345566667777666789999999999999999999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecC
Q 008602 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEE 519 (560)
Q Consensus 440 ~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~ 519 (560)
+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||||++|.|...|+|++||+||.|..|.|++++++
T Consensus 251 ~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~ 330 (591)
T TIGR01389 251 ALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSP 330 (591)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHH
Q 008602 520 PEVFVVKKMQK 530 (560)
Q Consensus 520 ~e~~~~~~l~~ 530 (560)
.|...+..+.+
T Consensus 331 ~d~~~~~~~i~ 341 (591)
T TIGR01389 331 ADIALLKRRIE 341 (591)
T ss_pred HHHHHHHHHHh
Confidence 88766655543
No 45
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.9e-45 Score=391.95 Aligned_cols=319 Identities=20% Similarity=0.269 Sum_probs=240.8
Q ss_pred HHHHHHHhCCCCCChHHHHHHHhhhhcC------CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCee
Q 008602 120 LLLERLEREGFNVPTEVQSAAIPSILKN------HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIE 193 (560)
Q Consensus 120 ~l~~~l~~~~~~~~~~~Q~~ai~~i~~~------~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (560)
.+.+.+...+| +||+.|.+|++.+.++ ++++++|+||||||++|+++++..+ ..|.+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~----------------~~g~q 286 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI----------------EAGYQ 286 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH----------------HcCCc
Confidence 34566788899 8999999999999986 4689999999999999999999988 45778
Q ss_pred EEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeE
Q 008602 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270 (560)
Q Consensus 194 vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~l 270 (560)
++|++||++||.|+++.+++++...+.. +..++|+..... ....+.++.++|+|+||+.+.+ .+.++++++
T Consensus 287 vlilaPT~~LA~Q~~~~~~~l~~~~gi~-v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~l 360 (630)
T TIGR00643 287 VALMAPTEILAEQHYNSLRNLLAPLGIE-VALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLAL 360 (630)
T ss_pred EEEECCHHHHHHHHHHHHHHHhcccCcE-EEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccce
Confidence 9999999999999999999998765444 677778766544 5666778889999999998865 567889999
Q ss_pred EEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccc
Q 008602 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350 (560)
Q Consensus 271 lIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (560)
+||||+|+ ++......+... ... ....++++||||++++...+......+...+...+
T Consensus 361 vVIDEaH~-fg~~qr~~l~~~---~~~---------------~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p--- 418 (630)
T TIGR00643 361 VIIDEQHR-FGVEQRKKLREK---GQG---------------GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELP--- 418 (630)
T ss_pred EEEechhh-ccHHHHHHHHHh---ccc---------------CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC---
Confidence 99999998 444333333222 100 02468999999998877665443211211111000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHH-h-cCCCeEEEEEcChh----
Q 008602 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH-A-LDAQTVIAFMNNTR---- 424 (560)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~-~-~~~~~~iif~~~~~---- 424 (560)
. -...+..++.. ...+ ..+...+. . ..+.+++|||+.++
T Consensus 419 ~--------------------------------~r~~i~~~~~~--~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~ 463 (630)
T TIGR00643 419 P--------------------------------GRKPITTVLIK--HDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEK 463 (630)
T ss_pred C--------------------------------CCCceEEEEeC--cchH-HHHHHHHHHHHHhCCcEEEEEcccccccc
Confidence 0 00011111111 1111 22222222 2 24789999999763
Q ss_pred ----hHHHHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC-Chhhh
Q 008602 425 ----QLKDAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT-DSIHY 497 (560)
Q Consensus 425 ----~~~~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~-s~~~y 497 (560)
.++.+++.|.+. ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||+++.|. +.+.|
T Consensus 464 ~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~l 543 (630)
T TIGR00643 464 LDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQL 543 (630)
T ss_pred chHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHH
Confidence 455677777653 67899999999999999999999999999999999999999999999999999987 67889
Q ss_pred HhhhccccCCCCcceEEEEec
Q 008602 498 AHRAGRTGRLGRRGTVVSICE 518 (560)
Q Consensus 498 ~Qr~GR~gR~g~~g~~~~l~~ 518 (560)
.||+||+||.|.+|+|++++.
T Consensus 544 hQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 544 HQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHhhhcccCCCCcEEEEEEC
Confidence 999999999999999999993
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.1e-45 Score=397.69 Aligned_cols=349 Identities=20% Similarity=0.261 Sum_probs=259.8
Q ss_pred CcccCCCCHHHHHHHHhCCCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 111 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
.|+++++++.+.+.+...||.+|+|+|.++++. +.+|+++++++|||||||++|.++++..+ .
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l----------------~ 65 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI----------------A 65 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH----------------h
Confidence 488999999999999999999999999999998 78899999999999999999999999988 3
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.+.+++|++|+++||.|+++.++++ ... ...+..+.|+...... .+ +.++|+|+||+++..++......+++++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~-~~~-g~~v~~~tGd~~~~~~--~l--~~~~IiV~Tpek~~~llr~~~~~l~~v~ 139 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERF-EEL-GVRVGISTGDYDSRDE--WL--GDNDIIVATSEKVDSLLRNGAPWLDDIT 139 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHh-hcC-CCEEEEEeCCcCcccc--cc--CCCCEEEECHHHHHHHHhcChhhhhhcC
Confidence 4567999999999999999999864 333 3346667776544332 12 3468999999999998887666678999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
+|||||+|.+.+.+++..++.++.++... .+..|++++|||+++ ...+..+ +....+....+..
T Consensus 140 lvViDE~H~l~d~~rg~~le~il~rl~~~--------------~~~~qii~lSATl~n-~~~la~w-l~~~~~~~~~rpv 203 (737)
T PRK02362 140 CVVVDEVHLIDSANRGPTLEVTLAKLRRL--------------NPDLQVVALSATIGN-ADELADW-LDAELVDSEWRPI 203 (737)
T ss_pred EEEEECccccCCCcchHHHHHHHHHHHhc--------------CCCCcEEEEcccCCC-HHHHHHH-hCCCcccCCCCCC
Confidence 99999999988888999998888877532 256799999999974 3344433 3221111100111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~ 429 (560)
++..... ..... .+.... ..............+.+.+. .++++||||+++..++.+
T Consensus 204 ~l~~~v~-----~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~ 259 (737)
T PRK02362 204 DLREGVF-----YGGAI----------------HFDDSQ-REVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGF 259 (737)
T ss_pred CCeeeEe-----cCCee----------------cccccc-ccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHH
Confidence 1100000 00000 000000 00000001122223333332 478999999999999988
Q ss_pred HHHHHHC------------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCc
Q 008602 430 VFKLEAR------------------------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473 (560)
Q Consensus 430 ~~~L~~~------------------------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~ 473 (560)
+..|... ...++.+||+|++.+|..+++.|++|.++|||||+++
T Consensus 260 a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tl 339 (737)
T PRK02362 260 AKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTL 339 (737)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhh
Confidence 8777542 1367899999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEE----cc-----CCCChhhhHhhhccccCCCCc--ceEEEEecCcc
Q 008602 474 ARGLDVAECDLVVN----LD-----LPTDSIHYAHRAGRTGRLGRR--GTVVSICEEPE 521 (560)
Q Consensus 474 ~~Gidip~v~~VI~----~~-----~p~s~~~y~Qr~GR~gR~g~~--g~~~~l~~~~e 521 (560)
++|+|+|++++||+ || .|.+..+|.||+|||||.|.. |.|++++.+.+
T Consensus 340 a~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 340 AAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred hhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 99999999999996 76 588999999999999999865 99999997653
No 47
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-46 Score=326.28 Aligned_cols=341 Identities=29% Similarity=0.499 Sum_probs=293.6
Q ss_pred cccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCC
Q 008602 102 IESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN 181 (560)
Q Consensus 102 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~ 181 (560)
+.......+.|.+|-|.|++++++-..||..|...|.++||...-|+|++..|..|.|||.+|.++.++.+.+
T Consensus 34 gsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------- 106 (387)
T KOG0329|consen 34 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------- 106 (387)
T ss_pred CcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC-------
Confidence 3344445567999999999999999999999999999999999999999999999999999999999998833
Q ss_pred CCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC
Q 008602 182 GNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG 261 (560)
Q Consensus 182 ~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~ 261 (560)
......++++|.||+||-|+..++.++....+...+..++||.......+.+++ +|.|+|+|||++..+.+.+
T Consensus 107 ------v~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~PhivVgTPGrilALvr~k 179 (387)
T KOG0329|consen 107 ------VDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CPHIVVGTPGRILALVRNR 179 (387)
T ss_pred ------CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CCeEEEcCcHHHHHHHHhc
Confidence 233567899999999999999999888888888889999999999998888887 8899999999999999999
Q ss_pred CccCCCeeEEEEechhhhhcc-chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCC
Q 008602 262 KLHTHGCRFLVLDEIDELLSF-NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340 (560)
Q Consensus 262 ~~~~~~l~llIiDE~h~l~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~ 340 (560)
.+++++++..|+||||.|++. +.+..+++|.+..+ ...|+..||||++.++...++.|+.+|
T Consensus 180 ~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp-----------------~~KQvmmfsatlskeiRpvC~kFmQdP 242 (387)
T KOG0329|consen 180 SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP-----------------HEKQVMMFSATLSKEIRPVCHKFMQDP 242 (387)
T ss_pred cCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCc-----------------ccceeeeeeeecchhhHHHHHhhhcCc
Confidence 999999999999999998876 77888888887664 678999999999999999999999999
Q ss_pred eEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEE
Q 008602 341 LLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFM 420 (560)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~ 420 (560)
..+..++...+ .-.+++++|.-.....|...+.+++...+..+++||+
T Consensus 243 mEi~vDdE~KL--------------------------------tLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFv 290 (387)
T KOG0329|consen 243 MEIFVDDEAKL--------------------------------TLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFV 290 (387)
T ss_pred hhhhccchhhh--------------------------------hhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEee
Confidence 87764432221 2235677777777788888888998888889999999
Q ss_pred cChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhh
Q 008602 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHR 500 (560)
Q Consensus 421 ~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr 500 (560)
.++..+. | +.+ +|||+.+++|+||..++.|||||.|.+..+|.||
T Consensus 291 Ksv~Rl~-------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHr 335 (387)
T KOG0329|consen 291 KSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHR 335 (387)
T ss_pred ehhhhhh-------------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHH
Confidence 9876510 2 113 8999999999999999999999999999999999
Q ss_pred hccccCCCCcceEEEEecCc-cHHHHHHHHHHhCCCccccc
Q 008602 501 AGRTGRLGRRGTVVSICEEP-EVFVVKKMQKQLAVPIQACE 540 (560)
Q Consensus 501 ~GR~gR~g~~g~~~~l~~~~-e~~~~~~l~~~l~~~~~~~~ 540 (560)
.|||||.|.+|.++.|++.. +...+..+++.+.+.+..++
T Consensus 336 v~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 336 VARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred hhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcC
Confidence 99999999999999998654 67788888887777665543
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6.4e-44 Score=391.37 Aligned_cols=351 Identities=23% Similarity=0.293 Sum_probs=245.8
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEE
Q 008602 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVI 196 (560)
Q Consensus 117 l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vli 196 (560)
+++.+.+.+.. +|..|||+|.+|++.+++|+++++++|||||||++|++|++..+...... .....+.++||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~-------~~~~~~~~~Ly 89 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE-------GELEDKVYCLY 89 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-------cCCCCCeEEEE
Confidence 67777777766 68899999999999999999999999999999999999999887431110 01134688999
Q ss_pred EccCHHHHHHHHHHHHHH-------h---C-CCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc--
Q 008602 197 VAPSRELGMQIVREIKKL-------L---G-PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL-- 263 (560)
Q Consensus 197 l~Pt~~La~Q~~~~~~~~-------~---~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~-- 263 (560)
++||++|+.|+++.+... + + ..+...+....|+....... .+....++|+|+||++|..++.....
T Consensus 90 IsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~-~~l~~~p~IlVtTPE~L~~ll~~~~~~~ 168 (876)
T PRK13767 90 VSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ-KMLKKPPHILITTPESLAILLNSPKFRE 168 (876)
T ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH-HHHhCCCCEEEecHHHHHHHhcChhHHH
Confidence 999999999999876532 2 1 11133455666666554443 34445679999999999887765443
Q ss_pred cCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCC-----
Q 008602 264 HTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH----- 338 (560)
Q Consensus 264 ~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~----- 338 (560)
.++++++|||||+|.+.+..++..+...+.++.... ....|.+++|||+++. ...+.....
T Consensus 169 ~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~-------------~~~~q~IglSATl~~~-~~va~~L~~~~~~~ 234 (876)
T PRK13767 169 KLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA-------------GGEFVRIGLSATIEPL-EEVAKFLVGYEDDG 234 (876)
T ss_pred HHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc-------------CCCCeEEEEecccCCH-HHHHHHhcCccccC
Confidence 478899999999999988877777776666664321 2467999999999752 233332211
Q ss_pred --CCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeE
Q 008602 339 --DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTV 416 (560)
Q Consensus 339 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~ 416 (560)
.+..+....... ....... .... .................+..++. .++++
T Consensus 235 ~~r~~~iv~~~~~k---------------------~~~i~v~---~p~~-~l~~~~~~~~~~~l~~~L~~~i~--~~~~~ 287 (876)
T PRK13767 235 EPRDCEIVDARFVK---------------------PFDIKVI---SPVD-DLIHTPAEEISEALYETLHELIK--EHRTT 287 (876)
T ss_pred CCCceEEEccCCCc---------------------cceEEEe---ccCc-cccccccchhHHHHHHHHHHHHh--cCCCE
Confidence 111111000000 0000000 0000 00000000001122233333333 36799
Q ss_pred EEEEcChhhHHHHHHHHHHC------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC
Q 008602 417 IAFMNNTRQLKDAVFKLEAR------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL 490 (560)
Q Consensus 417 iif~~~~~~~~~~~~~L~~~------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~ 490 (560)
|||||++..++.++..|.+. +..+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+++.
T Consensus 288 LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~ 367 (876)
T PRK13767 288 LIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGS 367 (876)
T ss_pred EEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCC
Confidence 99999999999999999873 467999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHhhhccccCCC-CcceEEEEe
Q 008602 491 PTDSIHYAHRAGRTGRLG-RRGTVVSIC 517 (560)
Q Consensus 491 p~s~~~y~Qr~GR~gR~g-~~g~~~~l~ 517 (560)
|.+...|+||+||+||.+ ..+.++++.
T Consensus 368 P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 368 PKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999863 333343333
No 49
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7.3e-43 Score=379.16 Aligned_cols=344 Identities=20% Similarity=0.261 Sum_probs=254.7
Q ss_pred CcccCCCCHHHHHHHHhCCCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 111 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
.|+++++++.+.+.+.+.||..|+|+|.++++. +.+|+++++++|||||||++|.+|++..+. .
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~---------------~ 66 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLL---------------R 66 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHH---------------h
Confidence 478899999999999999999999999999986 889999999999999999999999998872 2
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.+.++|+++|+++|+.|+++.+..+ ... ...+..+.|+.+....+ + +.++|+|+||+++..++......+++++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~-~~~-g~~v~~~~Gd~~~~~~~--~--~~~~IiV~Tpe~~~~ll~~~~~~l~~l~ 140 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDW-EKL-GLRVAMTTGDYDSTDEW--L--GKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHH-hhc-CCEEEEEeCCCCCchhh--h--ccCCEEEEcHHHHHHHHhCCchhhhcCC
Confidence 3568999999999999999999875 323 33466677765543322 2 4578999999999998887767789999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
+||+||+|.+.+.+++..+..++.++. ...|++++|||+++ ...+.. |+.........+..
T Consensus 141 lvViDE~H~l~~~~rg~~le~il~~l~-----------------~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~rpv 201 (720)
T PRK00254 141 LVVADEIHLIGSYDRGATLEMILTHML-----------------GRAQILGLSATVGN-AEELAE-WLNAELVVSDWRPV 201 (720)
T ss_pred EEEEcCcCccCCccchHHHHHHHHhcC-----------------cCCcEEEEEccCCC-HHHHHH-HhCCccccCCCCCC
Confidence 999999999888888899988888763 45799999999974 455554 44332211111111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~ 429 (560)
++.... .. .. .. ......... ........+.+.+. .++++||||+++..++.+
T Consensus 202 ~l~~~~------~~---~~-----~~-------~~~~~~~~~----~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~ 254 (720)
T PRK00254 202 KLRKGV------FY---QG-----FL-------FWEDGKIER----FPNSWESLVYDAVK--KGKGALVFVNTRRSAEKE 254 (720)
T ss_pred cceeeE------ec---CC-----ee-------eccCcchhc----chHHHHHHHHHHHH--hCCCEEEEEcChHHHHHH
Confidence 110000 00 00 00 000000000 00111222333343 378999999999998877
Q ss_pred HHHHHH---------------------------------CCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccC
Q 008602 430 VFKLEA---------------------------------RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476 (560)
Q Consensus 430 ~~~L~~---------------------------------~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~G 476 (560)
+..|.. ....+.++||+|++++|..+++.|++|.++|||||+++++|
T Consensus 255 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~G 334 (720)
T PRK00254 255 ALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAG 334 (720)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhh
Confidence 755532 12358899999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE-------ccCCC-ChhhhHhhhccccCCC--CcceEEEEecCcc
Q 008602 477 LDVAECDLVVN-------LDLPT-DSIHYAHRAGRTGRLG--RRGTVVSICEEPE 521 (560)
Q Consensus 477 idip~v~~VI~-------~~~p~-s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~e 521 (560)
+|+|++++||. ++.|. +..+|.||+|||||.| ..|.+++++...+
T Consensus 335 vnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 335 INLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999993 44433 5679999999999965 6799999997655
No 50
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=5.2e-43 Score=352.07 Aligned_cols=319 Identities=21% Similarity=0.291 Sum_probs=259.9
Q ss_pred HHHHHHhCCCCCChHHHHHHHhhhhcC------CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeE
Q 008602 121 LLERLEREGFNVPTEVQSAAIPSILKN------HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194 (560)
Q Consensus 121 l~~~l~~~~~~~~~~~Q~~ai~~i~~~------~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 194 (560)
+.+.+...+| ++|..|.+++..|..+ ++.|+.|++|||||.+++++++..+ ..|.|+
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai----------------~~G~Q~ 314 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI----------------EAGYQA 314 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH----------------HcCCee
Confidence 3455678899 9999999999999986 7899999999999999999999999 789999
Q ss_pred EEEccCHHHHHHHHHHHHHHhCCCCCceEEEEec---CCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEE
Q 008602 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG---GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFL 271 (560)
Q Consensus 195 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ll 271 (560)
+.++||-.||.|+++.+.+++...+.. +..++| |.........+.+|..+|+|||+..+.+ .+.|++++++
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~i~-V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLV 388 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLGIR-VALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLV 388 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcCCe-EEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEE
Confidence 999999999999999999999987754 666666 5556677788889999999999998887 8999999999
Q ss_pred EEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhcc-CceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccc
Q 008602 272 VLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRA-ERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350 (560)
Q Consensus 272 IiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (560)
|+||-|| |+...+..+.+-- . ..+++.|||||.|++..+..+.--+.+.+..-+.-+
T Consensus 389 IiDEQHR-FGV~QR~~L~~KG---------------------~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GR 446 (677)
T COG1200 389 IIDEQHR-FGVHQRLALREKG---------------------EQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGR 446 (677)
T ss_pred EEecccc-ccHHHHHHHHHhC---------------------CCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCC
Confidence 9999999 8877666665441 2 458999999999999999887655555554321100
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEE-echhhHHHHHHHHHHhcCCCeEEEEEcChhhHH--
Q 008602 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV-TKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK-- 427 (560)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~-- 427 (560)
..+..+... ......++.+...+. .+.++++.|+-+++.+
T Consensus 447 -----------------------------------kpI~T~~i~~~~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l 489 (677)
T COG1200 447 -----------------------------------KPITTVVIPHERRPEVYERIREEIA--KGRQAYVVCPLIEESEKL 489 (677)
T ss_pred -----------------------------------CceEEEEeccccHHHHHHHHHHHHH--cCCEEEEEeccccccccc
Confidence 012222211 222233333333333 5899999999887654
Q ss_pred ------HHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC-ChhhhH
Q 008602 428 ------DAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT-DSIHYA 498 (560)
Q Consensus 428 ------~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~-s~~~y~ 498 (560)
.++..|+.. ++++..+||.|++.++..+|+.|++|+++|||||++++-|||+|+++++|+++.-+ ..++..
T Consensus 490 ~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLH 569 (677)
T COG1200 490 ELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLH 569 (677)
T ss_pred hhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHH
Confidence 455666643 57799999999999999999999999999999999999999999999999999865 789999
Q ss_pred hhhccccCCCCcceEEEEecCcc
Q 008602 499 HRAGRTGRLGRRGTVVSICEEPE 521 (560)
Q Consensus 499 Qr~GR~gR~g~~g~~~~l~~~~e 521 (560)
|-+||+||.+.+++|++++.++.
T Consensus 570 QLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 570 QLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999998887
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-42 Score=373.17 Aligned_cols=340 Identities=18% Similarity=0.215 Sum_probs=249.6
Q ss_pred CcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCC
Q 008602 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKT 190 (560)
Q Consensus 111 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 190 (560)
.|+++++++.+.+.+...+| +++++|.++++.+.+++++++++|||||||++|.++++..+ ..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~-~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l----------------~~ 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF----------------LA 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCC-CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH----------------Hh
Confidence 37889999999999999999 59999999999999999999999999999999999999887 33
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeE
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~l 270 (560)
+.++++++|+++||.|++++++++. .. +..+...+|+....... + ..++|+|+||+++..++......++++++
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~-~~-g~~v~~~~G~~~~~~~~--~--~~~dIiv~Tpek~~~l~~~~~~~l~~v~l 138 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLR-SL-GMRVKISIGDYDDPPDF--I--KRYDVVILTSEKADSLIHHDPYIINDVGL 138 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHh-hc-CCeEEEEeCCCCCChhh--h--ccCCEEEECHHHHHHHHhCChhHHhhcCE
Confidence 5679999999999999999998753 22 23355666665443321 2 24689999999999988877777889999
Q ss_pred EEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccc
Q 008602 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350 (560)
Q Consensus 271 lIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (560)
||+||+|.+.+.+++..++.++..+... +++.|++++|||+++ ...+..+ +....+....+..+
T Consensus 139 vViDEaH~l~d~~rg~~le~ll~~~~~~--------------~~~~riI~lSATl~n-~~~la~w-l~~~~~~~~~r~vp 202 (674)
T PRK01172 139 IVADEIHIIGDEDRGPTLETVLSSARYV--------------NPDARILALSATVSN-ANELAQW-LNASLIKSNFRPVP 202 (674)
T ss_pred EEEecchhccCCCccHHHHHHHHHHHhc--------------CcCCcEEEEeCccCC-HHHHHHH-hCCCccCCCCCCCC
Confidence 9999999988888888888887765421 256799999999964 4555543 33222111111111
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHH
Q 008602 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~ 428 (560)
+..... .....+........ ..+..++.. ..++++||||++++.++.
T Consensus 203 l~~~i~------------------------------~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~ 251 (674)
T PRK01172 203 LKLGIL------------------------------YRKRLILDGYERSQ-VDINSLIKETVNDGGQVLVFVSSRKNAED 251 (674)
T ss_pred eEEEEE------------------------------ecCeeeeccccccc-ccHHHHHHHHHhCCCcEEEEeccHHHHHH
Confidence 100000 00000000000000 001122221 347899999999999999
Q ss_pred HHHHHHHC-------------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCC
Q 008602 429 AVFKLEAR-------------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECD 483 (560)
Q Consensus 429 ~~~~L~~~-------------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~ 483 (560)
++..|.+. ...+..+||+|++++|..+++.|++|.++|||||+++++|+|+|+..
T Consensus 252 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~ 331 (674)
T PRK01172 252 YAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL 331 (674)
T ss_pred HHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE
Confidence 99888653 12478899999999999999999999999999999999999999865
Q ss_pred EEEEccC---------CCChhhhHhhhccccCCCC--cceEEEEecCcc
Q 008602 484 LVVNLDL---------PTDSIHYAHRAGRTGRLGR--RGTVVSICEEPE 521 (560)
Q Consensus 484 ~VI~~~~---------p~s~~~y~Qr~GR~gR~g~--~g~~~~l~~~~e 521 (560)
||+++. |.+..+|.||+|||||.|. .|.+++++...+
T Consensus 332 -VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 332 -VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred -EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 444443 4578899999999999984 577888876544
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=8.1e-42 Score=357.47 Aligned_cols=347 Identities=25% Similarity=0.337 Sum_probs=270.2
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEE
Q 008602 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVI 196 (560)
Q Consensus 117 l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vli 196 (560)
+++.+.+++... |..|||.|.+||+.+.+|+++||+||||||||+++++|++..+.... ......|..+|+
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~--------~~~~~~~i~~lY 78 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG--------KGKLEDGIYALY 78 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc--------CCCCCCceEEEE
Confidence 688999999988 88999999999999999999999999999999999999999985431 112256789999
Q ss_pred EccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc--cCCCeeEEEEe
Q 008602 197 VAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL--HTHGCRFLVLD 274 (560)
Q Consensus 197 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~--~~~~l~llIiD 274 (560)
++|.++|..++.+++..+....+.. + ...+|+....+...+....|+|+|+||+.|.-++....+ .|.++.++|||
T Consensus 79 IsPLkALn~Di~~rL~~~~~~~G~~-v-~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVD 156 (814)
T COG1201 79 ISPLKALNNDIRRRLEEPLRELGIE-V-AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVD 156 (814)
T ss_pred eCcHHHHHHHHHHHHHHHHHHcCCc-c-ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEee
Confidence 9999999999999999987766555 3 566667777778888888999999999999887776443 67899999999
Q ss_pred chhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCC--CeEEeeccc-ccc
Q 008602 275 EIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD--PLLVQAKNV-IPL 351 (560)
Q Consensus 275 E~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~-~~~ 351 (560)
|+|.+.+...+.++.--++++.... .+.|.+++|||..+ ....+++.... +..+..... .+.
T Consensus 157 EiHel~~sKRG~~Lsl~LeRL~~l~--------------~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~ 221 (814)
T COG1201 157 EIHALAESKRGVQLALSLERLRELA--------------GDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKL 221 (814)
T ss_pred hhhhhhccccchhhhhhHHHHHhhC--------------cccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcc
Confidence 9999998888877776666664322 26799999999973 33444433322 333321111 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHH
Q 008602 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVF 431 (560)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~ 431 (560)
+. .. ..+....... .......+..+.++++. ...++||+|++..++.++.
T Consensus 222 ~i-------------------~v--------~~p~~~~~~~-~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~ 271 (814)
T COG1201 222 EI-------------------KV--------ISPVEDLIYD-EELWAALYERIAELVKK--HRTTLIFTNTRSGAERLAF 271 (814)
T ss_pred eE-------------------EE--------EecCCccccc-cchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHH
Confidence 00 00 0000000000 12223455566666666 3499999999999999999
Q ss_pred HHHHCC-CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccC-CCC
Q 008602 432 KLEARG-MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGR-LGR 509 (560)
Q Consensus 432 ~L~~~~-~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR-~g~ 509 (560)
.|++.+ ..+..+||.++.++|..+.++|++|+.+++|||+.++-||||.+++.||+|+.|.+...+.||+||+|+ .|.
T Consensus 272 ~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~ 351 (814)
T COG1201 272 RLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGE 351 (814)
T ss_pred HHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCC
Confidence 999986 899999999999999999999999999999999999999999999999999999999999999999996 455
Q ss_pred cceEEEEecC
Q 008602 510 RGTVVSICEE 519 (560)
Q Consensus 510 ~g~~~~l~~~ 519 (560)
....+++..+
T Consensus 352 ~Skg~ii~~~ 361 (814)
T COG1201 352 VSKGIIIAED 361 (814)
T ss_pred cccEEEEecC
Confidence 4566666655
No 53
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.6e-41 Score=360.24 Aligned_cols=309 Identities=18% Similarity=0.283 Sum_probs=235.9
Q ss_pred hHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 134 ~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
+.+-.+.+..+.++.+++++|+||||||+++.++++... ..+.+++|++|||++|.|+++++.+
T Consensus 4 ~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~----------------~~~~~ilvlqPrR~aA~qiA~rva~ 67 (819)
T TIGR01970 4 HAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP----------------GIGGKIIMLEPRRLAARSAAQRLAS 67 (819)
T ss_pred hHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh----------------ccCCeEEEEeCcHHHHHHHHHHHHH
Confidence 344556777788889999999999999999999999875 2245799999999999999999988
Q ss_pred HhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh-hhhccchHHHH-HHH
Q 008602 214 LLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID-ELLSFNFREAM-HRI 291 (560)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h-~l~~~~~~~~l-~~i 291 (560)
.++...+..+++.+++.+.. +..++|+|+|+++|.+++.. ...++++++|||||+| ++++.++.-.+ +.+
T Consensus 68 ~~~~~~g~~VGy~vr~~~~~-------s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i 139 (819)
T TIGR01970 68 QLGEAVGQTVGYRVRGENKV-------SRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDV 139 (819)
T ss_pred HhCCCcCcEEEEEEcccccc-------CCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHH
Confidence 77665555677666654321 23457999999999998876 4578999999999999 67887765433 445
Q ss_pred HHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCC
Q 008602 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSS 371 (560)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (560)
...+ +++.|+++||||++... +...+...+.+...+..+++
T Consensus 140 ~~~l-----------------r~dlqlIlmSATl~~~~--l~~~l~~~~vI~~~gr~~pV-------------------- 180 (819)
T TIGR01970 140 QSSL-----------------REDLKILAMSATLDGER--LSSLLPDAPVVESEGRSFPV-------------------- 180 (819)
T ss_pred HHhc-----------------CCCceEEEEeCCCCHHH--HHHHcCCCcEEEecCcceee--------------------
Confidence 4433 36789999999997653 44444344444332222221
Q ss_pred CcchhhhcccccCCcccceEEEEechhhH-----HHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHH---CCCceeec
Q 008602 372 NSNLQAKQADQSLPPALKHYYCVTKLQHK-----VDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEA---RGMKAAEL 443 (560)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-----~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~---~~~~~~~l 443 (560)
..+|.......+ ...+..++.. ..+++|||+++..+++.++..|.+ .++.+..+
T Consensus 181 -----------------e~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pL 242 (819)
T TIGR01970 181 -----------------EIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPL 242 (819)
T ss_pred -----------------eeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 122221111111 1233333333 368999999999999999999987 47889999
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCC------------------hhhhHhhhcccc
Q 008602 444 HGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTD------------------SIHYAHRAGRTG 505 (560)
Q Consensus 444 hg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s------------------~~~y~Qr~GR~g 505 (560)
||+|++++|.++++.|.+|+.+|||||+++++|||||+|++||+++.++. .++|.||+||+|
T Consensus 243 Hg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAG 322 (819)
T TIGR01970 243 YGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAG 322 (819)
T ss_pred cCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999998752 356899999999
Q ss_pred CCCCcceEEEEecCccHHH
Q 008602 506 RLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 506 R~g~~g~~~~l~~~~e~~~ 524 (560)
|. .+|.||.++++.+...
T Consensus 323 R~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 323 RL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred CC-CCCEEEEeCCHHHHHh
Confidence 99 7899999998776443
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.7e-40 Score=349.64 Aligned_cols=317 Identities=17% Similarity=0.182 Sum_probs=231.4
Q ss_pred CCCCCChHHHHHHHhhhhcCC-cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEE-EEccCHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNH-DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAV-IVAPSRELGM 205 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~-~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vl-il~Pt~~La~ 205 (560)
.||. |||+|.++++.++.|+ ++++.+|||||||.++..+.+... . ....++.| +++|||+||.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~-------------~~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I-------------GAKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c-------------cccccceEEEeCchHHHHH
Confidence 4884 9999999999999998 577789999999997665544221 1 12234444 5779999999
Q ss_pred HHHHHHHHHhCCCC----------------------CceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc
Q 008602 206 QIVREIKKLLGPSD----------------------KKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL 263 (560)
Q Consensus 206 Q~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~ 263 (560)
|+++.+.++..... ...+..++||.+...++..+.. .++|+|+|++.+.+ +.+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~-~p~IIVgT~D~i~s----r~L 151 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH-RPAVIVGTVDMIGS----RLL 151 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC-CCcEEEECHHHHcC----Ccc
Confidence 99999998865331 2446789999999999988865 46899999655533 332
Q ss_pred ----------------cCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh
Q 008602 264 ----------------HTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF 327 (560)
Q Consensus 264 ----------------~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 327 (560)
.++++.+||+|||| ++++|.+.+..|++.+..... ..++|+++||||++.
T Consensus 152 ~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~------------~rprQtLLFSAT~p~ 217 (844)
T TIGR02621 152 FSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD------------FLPLRVVELTATSRT 217 (844)
T ss_pred ccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc------------cccceEEEEecCCCc
Confidence 26789999999999 678999999999986521000 023699999999998
Q ss_pred HHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHH
Q 008602 328 SVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC 407 (560)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 407 (560)
++..+...+..++..+..... ......+.+++. .....+...+...
T Consensus 218 ei~~l~~~~~~~p~~i~V~~~---------------------------------~l~a~ki~q~v~-v~~e~Kl~~lv~~ 263 (844)
T TIGR02621 218 DGPDRTTLLSAEDYKHPVLKK---------------------------------RLAAKKIVKLVP-PSDEKFLSTMVKE 263 (844)
T ss_pred cHHHHHHHHccCCceeecccc---------------------------------cccccceEEEEe-cChHHHHHHHHHH
Confidence 888877777666544331100 000011222222 2222233222222
Q ss_pred H---HhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHH-----HHHHHhhc----CC-------ceEEE
Q 008602 408 V---HALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARS-----TTLKKFKN----GE-------VRVLV 468 (560)
Q Consensus 408 ~---~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~-----~v~~~F~~----g~-------~~iLv 468 (560)
+ ....++++|||||+++.++.++..|.+.++ ..+||+|++.+|. .++++|++ |+ ..|||
T Consensus 264 L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILV 341 (844)
T TIGR02621 264 LNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLV 341 (844)
T ss_pred HHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEe
Confidence 1 123568999999999999999999998876 8999999999999 88999987 44 68999
Q ss_pred EecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceE-EEEe
Q 008602 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTV-VSIC 517 (560)
Q Consensus 469 aT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~-~~l~ 517 (560)
||+++++||||+. ++||++..| .+.|+||+||+||.|..|.+ +.++
T Consensus 342 ATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 342 CTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred ccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 9999999999986 899988776 68999999999999886433 4444
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.3e-41 Score=337.72 Aligned_cols=328 Identities=19% Similarity=0.258 Sum_probs=258.3
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
-+||..++|-|.++|..+++++|+++.+|||.|||++|.+|++-.- | -+||++|..+|...
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~------------------G-~TLVVSPLiSLM~D 72 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE------------------G-LTLVVSPLISLMKD 72 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC------------------C-CEEEECchHHHHHH
Confidence 4589999999999999999999999999999999999999998653 1 38999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEE---ecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccc
Q 008602 207 IVREIKKLLGPSDKKAVQQL---VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN 283 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~ 283 (560)
+.+.++.. +.....+ ....+.......+..|..++++-+|++|..-.....+.--.+.++||||||++.+|+
T Consensus 73 QV~~l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 73 QVDQLEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWG 147 (590)
T ss_pred HHHHHHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcC
Confidence 99888774 1223222 233455566777888888999999999976322223334567899999999999995
Q ss_pred --hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc--CCCCeEEeeccccccCCCCCCCC
Q 008602 284 --FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW--GHDPLLVQAKNVIPLESMPATGP 359 (560)
Q Consensus 284 --~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 359 (560)
|++.+..+-..... -++.+++.+|||-++.+..-+... +.++.++......|
T Consensus 148 hdFRP~Y~~lg~l~~~---------------~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp--------- 203 (590)
T COG0514 148 HDFRPDYRRLGRLRAG---------------LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP--------- 203 (590)
T ss_pred CccCHhHHHHHHHHhh---------------CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc---------
Confidence 89998887665532 146689999999998888777654 33443333221111
Q ss_pred CCCCCCCCCCCCCcchhhhcccccCCcccceEEEEec--hhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCC
Q 008602 360 GNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK--LQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG 437 (560)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~ 437 (560)
...+..... ...+...+.. ......+..||||.+++.++.++..|...|
T Consensus 204 ----------------------------Ni~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g 254 (590)
T COG0514 204 ----------------------------NLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNG 254 (590)
T ss_pred ----------------------------hhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCC
Confidence 111111111 1222222222 123456779999999999999999999999
Q ss_pred CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEe
Q 008602 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517 (560)
Q Consensus 438 ~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~ 517 (560)
+.+..+||+|+.++|+.+.++|..++.+|+|||..+++|||.|++++|||||+|.|.+.|+|-+|||||.|.+..|++|+
T Consensus 255 ~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 255 ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHH
Q 008602 518 EEPEVFVVKKMQKQ 531 (560)
Q Consensus 518 ~~~e~~~~~~l~~~ 531 (560)
++.|....+.+.+.
T Consensus 335 ~~~D~~~~~~~i~~ 348 (590)
T COG0514 335 SPEDIRWQRYLIEQ 348 (590)
T ss_pred ccccHHHHHHHHHh
Confidence 99997766666554
No 56
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.3e-40 Score=358.40 Aligned_cols=308 Identities=17% Similarity=0.293 Sum_probs=233.5
Q ss_pred ChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
.+.+-.+.+..+.++++++++|+||||||++|.+++++.. ..+.+++|++|||++|.|+++++.
T Consensus 6 i~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~----------------~~~~~ilvlqPrR~aA~qia~rva 69 (812)
T PRK11664 6 VAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG----------------GINGKIIMLEPRRLAARNVAQRLA 69 (812)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC----------------CcCCeEEEECChHHHHHHHHHHHH
Confidence 3455566778888899999999999999999999998754 122479999999999999999998
Q ss_pred HHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhh-hhccchH-HHHHH
Q 008602 213 KLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE-LLSFNFR-EAMHR 290 (560)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~-l~~~~~~-~~l~~ 290 (560)
+.++...+..+++.+++.+... ...+|+|+|||+|.+++.. ...++++++|||||+|. +++.++. ..+..
T Consensus 70 ~~l~~~~g~~VGy~vr~~~~~~-------~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~ 141 (812)
T PRK11664 70 EQLGEKPGETVGYRMRAESKVG-------PNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLD 141 (812)
T ss_pred HHhCcccCceEEEEecCccccC-------CCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHH
Confidence 8877666666787777654322 2346999999999998876 45789999999999994 5555442 23344
Q ss_pred HHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCC
Q 008602 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSS 370 (560)
Q Consensus 291 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (560)
+.+.+ +++.|+++||||++.. .+...+...+.+...+..+++
T Consensus 142 i~~~l-----------------r~~lqlilmSATl~~~--~l~~~~~~~~~I~~~gr~~pV------------------- 183 (812)
T PRK11664 142 VQQGL-----------------RDDLKLLIMSATLDND--RLQQLLPDAPVIVSEGRSFPV------------------- 183 (812)
T ss_pred HHHhC-----------------CccceEEEEecCCCHH--HHHHhcCCCCEEEecCccccc-------------------
Confidence 44433 3678999999999754 344444334444332222221
Q ss_pred CCcchhhhcccccCCcccceEEEEechhhHH-----HHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHH---CCCceee
Q 008602 371 SNSNLQAKQADQSLPPALKHYYCVTKLQHKV-----DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEA---RGMKAAE 442 (560)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~---~~~~~~~ 442 (560)
.++|.......+. ..+..++.. ..+.+|||+++..+++.+++.|.+ .++.+..
T Consensus 184 ------------------~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~ 244 (812)
T PRK11664 184 ------------------ERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCP 244 (812)
T ss_pred ------------------eEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEE
Confidence 1112111111111 123333332 468999999999999999999987 4788999
Q ss_pred ccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCC------------------hhhhHhhhccc
Q 008602 443 LHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTD------------------SIHYAHRAGRT 504 (560)
Q Consensus 443 lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s------------------~~~y~Qr~GR~ 504 (560)
+||+|+..+|.+++..|.+|+.+|||||+++++|||||+|++||+++.++. -++|.||+||+
T Consensus 245 Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRa 324 (812)
T PRK11664 245 LYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRA 324 (812)
T ss_pred eeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999887652 36799999999
Q ss_pred cCCCCcceEEEEecCccH
Q 008602 505 GRLGRRGTVVSICEEPEV 522 (560)
Q Consensus 505 gR~g~~g~~~~l~~~~e~ 522 (560)
||. .+|.||.++++.+.
T Consensus 325 GR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 325 GRL-EPGICLHLYSKEQA 341 (812)
T ss_pred CCC-CCcEEEEecCHHHH
Confidence 999 68999999987654
No 57
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.6e-40 Score=315.30 Aligned_cols=353 Identities=21% Similarity=0.272 Sum_probs=249.2
Q ss_pred CCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHH
Q 008602 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR 209 (560)
Q Consensus 130 ~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~ 209 (560)
..+++.||.......+.+ ++|++.|||-|||+++++.+...+. ..+.++|+++||+.|+.|+++
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~---------------~~~~kvlfLAPTKPLV~Qh~~ 76 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLR---------------WFGGKVLFLAPTKPLVLQHAE 76 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHH---------------hcCCeEEEecCCchHHHHHHH
Confidence 348899999998887776 9999999999999999999998873 223389999999999999999
Q ss_pred HHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHH-
Q 008602 210 EIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM- 288 (560)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l- 288 (560)
.|.+.++-.+.. +..+.|..........+.++. |+|+||+.+.+-+..+.+++.++.++|||||||-.+..-...+
T Consensus 77 ~~~~v~~ip~~~-i~~ltGev~p~~R~~~w~~~k--VfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va 153 (542)
T COG1111 77 FCRKVTGIPEDE-IAALTGEVRPEEREELWAKKK--VFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVA 153 (542)
T ss_pred HHHHHhCCChhh-eeeecCCCChHHHHHHHhhCC--EEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHH
Confidence 999988765444 667888887777777777665 9999999999999999999999999999999997766444444
Q ss_pred HHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHH---HHHHcCCCCeEEeeccccccCCCCCCCCC-----
Q 008602 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIR---AARSWGHDPLLVQAKNVIPLESMPATGPG----- 360 (560)
Q Consensus 289 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 360 (560)
+..+..- .+..++++||||..+... .+....-.-+.+.+....++..+......
T Consensus 154 ~~y~~~~------------------k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV 215 (542)
T COG1111 154 KEYLRSA------------------KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKV 215 (542)
T ss_pred HHHHHhc------------------cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEec
Confidence 4454432 566899999999644433 33333322233322221111110000000
Q ss_pred ---------------------------CCCCCCCCCCCCcchhhh-------cc-c------------------------
Q 008602 361 ---------------------------NLSGPMSGSSSNSNLQAK-------QA-D------------------------ 381 (560)
Q Consensus 361 ---------------------------~~~~~~~~~~~~~~~~~~-------~~-~------------------------ 381 (560)
.+................ .. .
T Consensus 216 ~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elle 295 (542)
T COG1111 216 DLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLE 295 (542)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000000 00 0
Q ss_pred --------------------------------ccCCcc---cceEEEEechhhHHHHHHHHHHh----cCCCeEEEEEcC
Q 008602 382 --------------------------------QSLPPA---LKHYYCVTKLQHKVDTLRRCVHA----LDAQTVIAFMNN 422 (560)
Q Consensus 382 --------------------------------~~~~~~---~~~~~~~~~~~~k~~~l~~~~~~----~~~~~~iif~~~ 422 (560)
..+... ........-...|++.+.+++.+ ..+.++|||.+.
T Consensus 296 tqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~y 375 (542)
T COG1111 296 TQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEY 375 (542)
T ss_pred hhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 000000 00000011122345555555544 456799999999
Q ss_pred hhhHHHHHHHHHHCCCcee-ec--------cCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCC
Q 008602 423 TRQLKDAVFKLEARGMKAA-EL--------HGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTD 493 (560)
Q Consensus 423 ~~~~~~~~~~L~~~~~~~~-~l--------hg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s 493 (560)
+++++.+..+|.+.+..+. .+ ..||++.++.++++.|++|+++|||||+++++|+|||+++.||+|++..|
T Consensus 376 RdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpS 455 (542)
T COG1111 376 RDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPS 455 (542)
T ss_pred HhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcH
Confidence 9999999999999887664 22 25799999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhccccCCCCcceEEEEecCc
Q 008602 494 SIHYAHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 494 ~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
...++||.||+||. ++|.+|+|+...
T Consensus 456 eIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 456 EIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred HHHHHHhhCccccC-CCCeEEEEEecC
Confidence 99999999999998 889999998766
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.4e-40 Score=343.40 Aligned_cols=328 Identities=17% Similarity=0.199 Sum_probs=223.9
Q ss_pred hHHHHHHHhhhhcCCcEEEEcCCCchHHHHH---------HHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAY---------LLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 134 ~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
..+|.++++.+.++++++++|+||||||.+. +.+.+..+.... ....+.+++|++||++||
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~----------~~~~~~~ilvt~PrreLa 235 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID----------PNFIERPIVLSLPRVALV 235 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc----------cccCCcEEEEECcHHHHH
Confidence 4589999999999999999999999999973 333333321000 012356899999999999
Q ss_pred HHHHHHHHHHhCCC--CCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhcc
Q 008602 205 MQIVREIKKLLGPS--DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282 (560)
Q Consensus 205 ~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~ 282 (560)
.|+..++.+..+.. ....+...+||... .+... .....+|+|+|++.. ...++++++|||||||.+...
T Consensus 236 ~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t-~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~ 306 (675)
T PHA02653 236 RLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINT-NPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQI 306 (675)
T ss_pred HHHHHHHHHHhCccccCCceEEEEECCcch-HHhhc-ccCCCCEEEEeCccc-------ccccccCCEEEccccccCccc
Confidence 99999998876542 23345667877652 21111 112457999998642 235778999999999986554
Q ss_pred chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccc--cccCCCCCCCCC
Q 008602 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV--IPLESMPATGPG 360 (560)
Q Consensus 283 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 360 (560)
+ ..+..++.... ...+|+++||||++.++..+. .++.+|..+..... .++........
T Consensus 307 ~--DllL~llk~~~----------------~~~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~grt~~pV~~~yi~~~- 366 (675)
T PHA02653 307 G--DIIIAVARKHI----------------DKIRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPGGTLFPISEVYVKNK- 366 (675)
T ss_pred h--hHHHHHHHHhh----------------hhcCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCCCcCCCeEEEEeecC-
Confidence 3 33444443331 123489999999998887775 56666655543210 11110000000
Q ss_pred CCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHC--
Q 008602 361 NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEAR-- 436 (560)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~-- 436 (560)
..+.....+. ...+...+..+... ..++++|||+++..+++.+++.|.+.
T Consensus 367 -----------------------~~~~~~~~y~---~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~ 420 (675)
T PHA02653 367 -----------------------YNPKNKRAYI---EEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP 420 (675)
T ss_pred -----------------------cccccchhhh---HHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC
Confidence 0000000000 01111122222211 23579999999999999999999987
Q ss_pred CCceeeccCCCCHHHHHHHHHHh-hcCCceEEEEecCcccCCCCCCCCEEEEcc---CCC---------ChhhhHhhhcc
Q 008602 437 GMKAAELHGDLGKLARSTTLKKF-KNGEVRVLVTNELSARGLDVAECDLVVNLD---LPT---------DSIHYAHRAGR 503 (560)
Q Consensus 437 ~~~~~~lhg~~~~~~r~~v~~~F-~~g~~~iLvaT~~~~~Gidip~v~~VI~~~---~p~---------s~~~y~Qr~GR 503 (560)
++.+..+||+|++. ++++++| ++|+.+|||||+++++|||||+|++||++| .|. |.++|.||+||
T Consensus 421 ~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGR 498 (675)
T PHA02653 421 IYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGR 498 (675)
T ss_pred CceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccC
Confidence 68999999999975 5667777 689999999999999999999999999998 554 78899999999
Q ss_pred ccCCCCcceEEEEecCccHHHHHHHH
Q 008602 504 TGRLGRRGTVVSICEEPEVFVVKKMQ 529 (560)
Q Consensus 504 ~gR~g~~g~~~~l~~~~e~~~~~~l~ 529 (560)
|||. ++|.||.|+++.+...+.++.
T Consensus 499 AGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 499 VGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred cCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 9999 789999999988765554443
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.2e-38 Score=353.84 Aligned_cols=306 Identities=21% Similarity=0.245 Sum_probs=218.6
Q ss_pred HHHh-CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 124 RLER-EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 124 ~l~~-~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
.+.+ .|+ .||++|..+++.++.|+|++++||||+|||.. .+++...+. ..+.+++|++||++
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~---------------~~g~~alIL~PTre 134 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLA---------------KKGKKSYIIFPTRL 134 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHH---------------hcCCeEEEEeccHH
Confidence 3433 478 89999999999999999999999999999964 445444441 23678999999999
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCCC-----hhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh
Q 008602 203 LGMQIVREIKKLLGPSDKKAVQQLVGGAN-----RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID 277 (560)
Q Consensus 203 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h 277 (560)
||.|+++.++++....... +..+.++.+ ...+...+.++.++|+|+||++|.+.+. .+...++++|||||||
T Consensus 135 La~Qi~~~l~~l~~~~~~~-~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD 211 (1176)
T PRK09401 135 LVEQVVEKLEKFGEKVGCG-VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVD 211 (1176)
T ss_pred HHHHHHHHHHHHhhhcCce-EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChH
Confidence 9999999999987655443 444554433 3344556677788999999999998765 4555679999999999
Q ss_pred hhhc-----------cchH-HHHHHHHHHhccCCCCCC-CCchhhhh------hccCceEEEEEeeCChHHHHHHHHcCC
Q 008602 278 ELLS-----------FNFR-EAMHRIVEHVGRRSGANP-REPKSALA------MRAERQTIMVSATVPFSVIRAARSWGH 338 (560)
Q Consensus 278 ~l~~-----------~~~~-~~l~~i~~~~~~~~~~~~-~~~~~~~~------~~~~~~~l~~SAT~~~~~~~~~~~~~~ 338 (560)
+|++ .+|. +.+..++..++.+....+ ......+. .....|++++|||+++..... ....
T Consensus 212 ~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~ 289 (1176)
T PRK09401 212 AVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFR 289 (1176)
T ss_pred HhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhh
Confidence 9986 4663 677888877753111000 00000000 012679999999998753321 1112
Q ss_pred CCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEE
Q 008602 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIA 418 (560)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~ii 418 (560)
++..+..+.. ......+.+.+.... .+...+..++... +.++||
T Consensus 290 ~ll~~~v~~~---------------------------------~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-~~~~LI 333 (1176)
T PRK09401 290 ELLGFEVGSP---------------------------------VFYLRNIVDSYIVDE--DSVEKLVELVKRL-GDGGLI 333 (1176)
T ss_pred ccceEEecCc---------------------------------ccccCCceEEEEEcc--cHHHHHHHHHHhc-CCCEEE
Confidence 2222211100 001123344444333 4566677777655 468999
Q ss_pred EEcChhh---HHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEE----ecCcccCCCCCC-CCEEEEccC
Q 008602 419 FMNNTRQ---LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT----NELSARGLDVAE-CDLVVNLDL 490 (560)
Q Consensus 419 f~~~~~~---~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLva----T~~~~~Gidip~-v~~VI~~~~ 490 (560)
||++... ++.++..|+..|+++..+||+| .+.+++|++|+++|||| |++++||||+|+ +++|||||.
T Consensus 334 Fv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~v 408 (1176)
T PRK09401 334 FVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGV 408 (1176)
T ss_pred EEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCC
Confidence 9999887 9999999999999999999999 23469999999999999 689999999999 899999999
Q ss_pred CC
Q 008602 491 PT 492 (560)
Q Consensus 491 p~ 492 (560)
|.
T Consensus 409 P~ 410 (1176)
T PRK09401 409 PK 410 (1176)
T ss_pred CC
Confidence 96
No 60
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1e-38 Score=354.84 Aligned_cols=361 Identities=19% Similarity=0.217 Sum_probs=229.8
Q ss_pred EEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhC----------C-CCC
Q 008602 152 IQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG----------P-SDK 220 (560)
Q Consensus 152 i~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~----------~-~~~ 220 (560)
|++|||||||++|.+|++..+........ .......+.++|||+|+++|+.|+++.++..+. . ...
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~---~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~ 77 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDT---REAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVN 77 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccc---cccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCc
Confidence 58999999999999999998853211000 000113468899999999999999999875321 1 123
Q ss_pred ceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC-ccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCC
Q 008602 221 KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK-LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRS 299 (560)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~-~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~ 299 (560)
..+....|+........ +.+..|+|+|+||++|..++.+.. ..++++++|||||+|.|.+..++..+...++++....
T Consensus 78 i~V~vrtGDt~~~eR~r-ll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 78 LRVGIRTGDTPAQERSK-LTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred eEEEEEECCCCHHHHHH-HhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 44666677666655444 444578999999999998876543 4689999999999999988766666655555554321
Q ss_pred CCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCC-CCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhh
Q 008602 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH-DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAK 378 (560)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (560)
..+.|+|++|||+.+ ...++.+... .+..+............. .+.. . +......
T Consensus 157 -------------~~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~r~~~l~v----~vp~--~---d~~~~~~- 212 (1490)
T PRK09751 157 -------------HTSAQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAMRHPQIRI----VVPV--A---NMDDVSS- 212 (1490)
T ss_pred -------------CCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCCcccceEE----EEec--C---chhhccc-
Confidence 245799999999986 4555554432 344332211110000000 0000 0 0000000
Q ss_pred cccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCC---------------------
Q 008602 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG--------------------- 437 (560)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~--------------------- 437 (560)
.......... ..............+...+ ..+.++|||||++..++.++..|++..
T Consensus 213 ~~~~~~~~~~-~~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1490)
T PRK09751 213 VASGTGEDSH-AGREGSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTS 289 (1490)
T ss_pred cccccccccc-hhhhhhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhcc
Confidence 0000000000 0000000000111122222 236899999999999999999987641
Q ss_pred ------------CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcccc
Q 008602 438 ------------MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505 (560)
Q Consensus 438 ------------~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~g 505 (560)
..+..+||+|++++|..+++.|++|++++||||+.++.||||+++++||+|+.|.+..+|+||+||+|
T Consensus 290 ~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAG 369 (1490)
T PRK09751 290 GATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAG 369 (1490)
T ss_pred ccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCC
Confidence 12568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCcceEEEEecCccHHHHH---HHHHHhCCCccccccCCC
Q 008602 506 RL-GRRGTVVSICEEPEVFVVK---KMQKQLAVPIQACEFTEG 544 (560)
Q Consensus 506 R~-g~~g~~~~l~~~~e~~~~~---~l~~~l~~~~~~~~~~~~ 544 (560)
|. |..+.++++..+.+ ..++ -++..++..++....+.+
T Consensus 370 R~~gg~s~gli~p~~r~-dlle~~~~ve~~l~g~iE~~~~p~n 411 (1490)
T PRK09751 370 HQVGGVSKGLFFPRTRR-DLVDSAVIVECMFAGRLENLTPPHN 411 (1490)
T ss_pred CCCCCccEEEEEeCcHH-HHHhhHHHHHHHhcCCCCccCCCCC
Confidence 96 22344553333222 1221 245666677776655544
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.2e-39 Score=313.22 Aligned_cols=345 Identities=23% Similarity=0.277 Sum_probs=271.7
Q ss_pred CcccCCCCHHHHHHHHhCCCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 111 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
..+++++++.+.+.+...|+.++.|.|..|+.+ +++|.|.+|+++|+||||++.-++-+..++ .
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l---------------~ 259 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL---------------S 259 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH---------------h
Confidence 367889999999999999999999999999987 889999999999999999999888777662 4
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHH---HHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQE---EALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.|.+.|+++|..+||+|-++.|++.....+.. +..-+|..-..... ..-..-..||+|||++-+..+++.+ -.+.
T Consensus 260 ~g~KmlfLvPLVALANQKy~dF~~rYs~Lglk-vairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lg 337 (830)
T COG1202 260 GGKKMLFLVPLVALANQKYEDFKERYSKLGLK-VAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLG 337 (830)
T ss_pred CCCeEEEEehhHHhhcchHHHHHHHhhcccce-EEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Cccc
Confidence 57889999999999999999999987665543 33333322211110 0111235689999999999999887 6688
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
+++.+||||+|.+-+...+..+..++.++.+.. ++.|++++|||+.+. .++++.+...++.....
T Consensus 338 diGtVVIDEiHtL~deERG~RLdGLI~RLr~l~--------------~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~R 402 (830)
T COG1202 338 DIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF--------------PGAQFIYLSATVGNP-EELAKKLGAKLVLYDER 402 (830)
T ss_pred ccceEEeeeeeeccchhcccchhhHHHHHHHhC--------------CCCeEEEEEeecCCh-HHHHHHhCCeeEeecCC
Confidence 999999999998777788888888888876433 578999999999643 45555555555444322
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhc--------CCCeEEE
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL--------DAQTVIA 418 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--------~~~~~ii 418 (560)
+ +|+ -.|.....+...|.+.+.++.+.. -.||+||
T Consensus 403 P-Vpl------------------------------------ErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIV 445 (830)
T COG1202 403 P-VPL------------------------------------ERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIV 445 (830)
T ss_pred C-CCh------------------------------------hHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEE
Confidence 2 111 233444444667777777776541 2489999
Q ss_pred EEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEE---EccC-CCCh
Q 008602 419 FMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV---NLDL-PTDS 494 (560)
Q Consensus 419 f~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI---~~~~-p~s~ 494 (560)
|.+++..+..++..|...|+++.++|++|+..+|..+...|.++++.++|+|..++-|+|+|.-.+|+ -++. ..|+
T Consensus 446 FT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~ 525 (830)
T COG1202 446 FTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSV 525 (830)
T ss_pred EecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999655544 2233 3489
Q ss_pred hhhHhhhccccCCC--CcceEEEEecCccHHH
Q 008602 495 IHYAHRAGRTGRLG--RRGTVVSICEEPEVFV 524 (560)
Q Consensus 495 ~~y~Qr~GR~gR~g--~~g~~~~l~~~~e~~~ 524 (560)
.+|.|+.|||||.+ ..|++|+++.+...+.
T Consensus 526 ~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~ 557 (830)
T COG1202 526 REFQQMLGRAGRPDYHDRGKVYLLVEPGKKYH 557 (830)
T ss_pred HHHHHHhcccCCCCcccCceEEEEecCChhhc
Confidence 99999999999975 5699999998765443
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.1e-37 Score=324.51 Aligned_cols=325 Identities=12% Similarity=0.100 Sum_probs=215.3
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
..|+++|.+|++.++.+++.++++|||+|||.++...+...+. ....++||+|||++|+.||.++
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~---------------~~~~~vLilvpt~eL~~Q~~~~ 177 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLE---------------NYEGKVLIIVPTTSLVTQMIDD 177 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh---------------cCCCeEEEEECcHHHHHHHHHH
Confidence 4899999999999999999999999999999987554332231 1223799999999999999999
Q ss_pred HHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHH
Q 008602 211 IKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290 (560)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~ 290 (560)
+.++.... ...+..+.+|.... ...+|+|+||+++.+... ..++++++||+||||++.+..+ ..
T Consensus 178 l~~~~~~~-~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~~----~~ 241 (501)
T PHA02558 178 FVDYRLFP-REAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKSL----TS 241 (501)
T ss_pred HHHhcccc-ccceeEEecCcccC--------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchhH----HH
Confidence 99875332 22244555654332 235799999999876332 2467899999999999876544 44
Q ss_pred HHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHH-HcCCCCeEEeec--cccccCCCCCCCCCCCCCCCC
Q 008602 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAAR-SWGHDPLLVQAK--NVIPLESMPATGPGNLSGPMS 367 (560)
Q Consensus 291 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 367 (560)
++..++ +..++++||||+......... .....|...... ...............+. .
T Consensus 242 il~~~~-----------------~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~---~ 301 (501)
T PHA02558 242 IITKLD-----------------NCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIF---L 301 (501)
T ss_pred HHHhhh-----------------ccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEe---c
Confidence 444442 345799999999643322111 111122222111 10000000000000000 0
Q ss_pred CCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccC
Q 008602 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHG 445 (560)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg 445 (560)
..... ........... ..+........+...+..+... ..+.+++|||+++++++.+++.|++.+.++..+||
T Consensus 302 ~~~~~--~~~~~~~~~~~---~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G 376 (501)
T PHA02558 302 RYPDE--DRVKLKGEDYQ---EEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSG 376 (501)
T ss_pred cCCHH--HhhhhcccchH---HHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00000 00000000000 0000111122233333333332 24678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEe-cCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcc
Q 008602 446 DLGKLARSTTLKKFKNGEVRVLVTN-ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG 511 (560)
Q Consensus 446 ~~~~~~r~~v~~~F~~g~~~iLvaT-~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g 511 (560)
+|+.++|..+++.|++|+..||||| +++++|+|+|++++||+++++.|...|+||+||++|.+..+
T Consensus 377 ~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 377 EVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999998 89999999999999999999999999999999999986543
No 63
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.9e-37 Score=350.94 Aligned_cols=350 Identities=17% Similarity=0.139 Sum_probs=248.1
Q ss_pred HHHHHHHh-CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEc
Q 008602 120 LLLERLER-EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA 198 (560)
Q Consensus 120 ~l~~~l~~-~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 198 (560)
++.+.+++ .|| .||++|..+++.+++|+|++++||||+|||+.++.+++... ..|.+++|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~----------------~~g~~aLVl~ 129 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA----------------LKGKKCYIIL 129 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH----------------hcCCeEEEEE
Confidence 34555665 799 79999999999999999999999999999997666665443 3467899999
Q ss_pred cCHHHHHHHHHHHHHHhCCCCC-ceEEEEecCCChhHH---HHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEe
Q 008602 199 PSRELGMQIVREIKKLLGPSDK-KAVQQLVGGANRSRQ---EEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLD 274 (560)
Q Consensus 199 Pt~~La~Q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiD 274 (560)
||++|+.|+++.++.+....+. ..+..+.|+.....+ ...+.++.++|+|+||++|.+..... ...+++++|||
T Consensus 130 PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVD 207 (1638)
T PRK14701 130 PTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVD 207 (1638)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEE
Confidence 9999999999999998654432 234556777666554 34566788999999999998755432 22678999999
Q ss_pred chhhhhc-----------cchHHHHHH-HHHHhccCCCCCCCC------chh--hhhhccCce-EEEEEeeCChHHHHHH
Q 008602 275 EIDELLS-----------FNFREAMHR-IVEHVGRRSGANPRE------PKS--ALAMRAERQ-TIMVSATVPFSVIRAA 333 (560)
Q Consensus 275 E~h~l~~-----------~~~~~~l~~-i~~~~~~~~~~~~~~------~~~--~~~~~~~~~-~l~~SAT~~~~~~~~~ 333 (560)
|||+|++ .+|.+.+.. +++.+.......... ... ....+...+ ++++|||.+++....
T Consensus 208 EAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~- 286 (1638)
T PRK14701 208 DVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRV- 286 (1638)
T ss_pred CceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHH-
Confidence 9999986 477777753 322221100000000 000 001123344 678999998642221
Q ss_pred HHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCC
Q 008602 334 RSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDA 413 (560)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 413 (560)
.+..++..+..+... .....+.+.+.......+ ..+.+++... +
T Consensus 287 -~l~~~~l~f~v~~~~---------------------------------~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g 330 (1638)
T PRK14701 287 -KLYRELLGFEVGSGR---------------------------------SALRNIVDVYLNPEKIIK-EHVRELLKKL-G 330 (1638)
T ss_pred -HHhhcCeEEEecCCC---------------------------------CCCCCcEEEEEECCHHHH-HHHHHHHHhC-C
Confidence 222444433322110 011234445444433333 4666777665 5
Q ss_pred CeEEEEEcChhh---HHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEe----cCcccCCCCCC-CCEE
Q 008602 414 QTVIAFMNNTRQ---LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN----ELSARGLDVAE-CDLV 485 (560)
Q Consensus 414 ~~~iif~~~~~~---~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT----~~~~~Gidip~-v~~V 485 (560)
.++||||++.+. ++.++..|.+.|+++..+||+ |..++++|++|+++||||| ++++||||+|+ +++|
T Consensus 331 ~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryv 405 (1638)
T PRK14701 331 KGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFA 405 (1638)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEE
Confidence 789999999875 589999999999999999995 8899999999999999999 58999999998 9999
Q ss_pred EEccCCC---ChhhhHhhh-------------ccccCCCCcceEEEEecCccHHHHHHHHH
Q 008602 486 VNLDLPT---DSIHYAHRA-------------GRTGRLGRRGTVVSICEEPEVFVVKKMQK 530 (560)
Q Consensus 486 I~~~~p~---s~~~y~Qr~-------------GR~gR~g~~g~~~~l~~~~e~~~~~~l~~ 530 (560)
||||+|+ +...|.|.. ||+||.|..+.+++.+...+...++.+.+
T Consensus 406 i~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 406 VFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred EEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhc
Confidence 9999999 888777766 99999998888886666666666555543
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.3e-36 Score=306.38 Aligned_cols=300 Identities=20% Similarity=0.231 Sum_probs=205.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEec
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~ 228 (560)
+++|+||||||||++|+++++..+.. ..+.+++|++|+++|+.|+++++..+|+.. ++...+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~--------------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~----~~~~~~ 62 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS--------------QKADRVIIALPTRATINAMYRRAKELFGSN----LGLLHS 62 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh--------------CCCCeEEEEeehHHHHHHHHHHHHHHhCcc----cEEeec
Confidence 58999999999999999999987621 335679999999999999999999987642 222222
Q ss_pred CCCh------------hHHHHHHHc-----CCCcEEEeCchHHHHHHHcCC----ccCC--CeeEEEEechhhhhccchH
Q 008602 229 GANR------------SRQEEALRK-----NKPAIVVGTPGRIAEISAAGK----LHTH--GCRFLVLDEIDELLSFNFR 285 (560)
Q Consensus 229 ~~~~------------~~~~~~l~~-----~~~~IlI~Tp~~l~~~l~~~~----~~~~--~l~llIiDE~h~l~~~~~~ 285 (560)
+... ......... ...+|+|+||+.+...+.... ..+. ..++|||||+|.+.+..+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~ 142 (358)
T TIGR01587 63 SSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLA 142 (358)
T ss_pred cHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHH
Confidence 2111 011111111 124699999999988655421 1111 2379999999997765443
Q ss_pred HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCC
Q 008602 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGP 365 (560)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (560)
. +..++..+. ..+.|+++||||++..+..+...+...+.... .+... .
T Consensus 143 ~-l~~~l~~l~----------------~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~----~~~~~--------~--- 190 (358)
T TIGR01587 143 L-ILAVLEVLK----------------DNDVPILLMSATLPKFLKEYAEKIGYVEFNEP----LDLKE--------E--- 190 (358)
T ss_pred H-HHHHHHHHH----------------HcCCCEEEEecCchHHHHHHHhcCCCcccccC----CCCcc--------c---
Confidence 3 555555543 24679999999998766666554432211000 00000 0
Q ss_pred CCCCCCCcchhhhcccccCCcccceEE--EEechhhHHHHHHHHHHh-cCCCeEEEEEcChhhHHHHHHHHHHCCC--ce
Q 008602 366 MSGSSSNSNLQAKQADQSLPPALKHYY--CVTKLQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLKDAVFKLEARGM--KA 440 (560)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~k~~~l~~~~~~-~~~~~~iif~~~~~~~~~~~~~L~~~~~--~~ 440 (560)
.....+.+ .......+...+..++.. ..++++||||+++++++.++..|++.+. .+
T Consensus 191 -------------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~ 251 (358)
T TIGR01587 191 -------------------RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEI 251 (358)
T ss_pred -------------------cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeE
Confidence 00000111 111112333444444443 3478999999999999999999988765 59
Q ss_pred eeccCCCCHHHHHH----HHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCc----ce
Q 008602 441 AELHGDLGKLARST----TLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRR----GT 512 (560)
Q Consensus 441 ~~lhg~~~~~~r~~----v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~----g~ 512 (560)
..+||+|++.+|.+ +++.|++|+.+|||||+++++|+|++ +++||++..| ..+|+||+||+||.|++ |.
T Consensus 252 ~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~ 328 (358)
T TIGR01587 252 MLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFE 328 (358)
T ss_pred EEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCe
Confidence 99999999999976 48999999999999999999999996 8899988766 78999999999998754 36
Q ss_pred EEEEecCc
Q 008602 513 VVSICEEP 520 (560)
Q Consensus 513 ~~~l~~~~ 520 (560)
+|++....
T Consensus 329 ~~v~~~~~ 336 (358)
T TIGR01587 329 VYIITIAP 336 (358)
T ss_pred EEEEeecC
Confidence 77777644
No 65
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.8e-36 Score=311.12 Aligned_cols=337 Identities=16% Similarity=0.134 Sum_probs=243.3
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.|. .|+|+|..+++.+++|+ |..+.||+|||++|++|++... ..|++++|++||++||.|.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~a----------------l~G~~v~VvTptreLA~qd 160 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAA----------------LAGLPVHVITVNDYLAERD 160 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHh----------------hcCCeEEEEcCcHHHHHHH
Confidence 377 89999999999999998 9999999999999999999876 4578899999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcCC------------------------
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAGK------------------------ 262 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~~------------------------ 262 (560)
++++..++...+. .+++++||.+.. ..... ..+||+|+|..-| .+.|..+.
T Consensus 161 ae~~~~l~~~lGl-sv~~i~gg~~~~--~r~~~-y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (656)
T PRK12898 161 AELMRPLYEALGL-TVGCVVEDQSPD--ERRAA-YGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRST 236 (656)
T ss_pred HHHHHHHHhhcCC-EEEEEeCCCCHH--HHHHH-cCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchh
Confidence 9999998876654 477888887643 22322 4568999999887 33443321
Q ss_pred -ccCCCeeEEEEechhhhh-cc-----------------chHHHHHHHHHHhccCCCCC---------------------
Q 008602 263 -LHTHGCRFLVLDEIDELL-SF-----------------NFREAMHRIVEHVGRRSGAN--------------------- 302 (560)
Q Consensus 263 -~~~~~l~llIiDE~h~l~-~~-----------------~~~~~l~~i~~~~~~~~~~~--------------------- 302 (560)
.....+.+.||||+|.++ |. .+...+..+...+.....+.
T Consensus 237 ~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~ 316 (656)
T PRK12898 237 QLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAEL 316 (656)
T ss_pred hhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHH
Confidence 113557899999999743 10 12222333333332110000
Q ss_pred ----CCCch--------hhhhhcc--------------------------------------------------------
Q 008602 303 ----PREPK--------SALAMRA-------------------------------------------------------- 314 (560)
Q Consensus 303 ----~~~~~--------~~~~~~~-------------------------------------------------------- 314 (560)
+.... ...+..+
T Consensus 317 ~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~ 396 (656)
T PRK12898 317 AESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETL 396 (656)
T ss_pred hCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceee
Confidence 00000 0000000
Q ss_pred -----------CceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhccccc
Q 008602 315 -----------ERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQS 383 (560)
Q Consensus 315 -----------~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (560)
-.++.+||||......++...|..++..+......
T Consensus 397 a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---------------------------------- 442 (656)
T PRK12898 397 ARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---------------------------------- 442 (656)
T ss_pred eeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc----------------------------------
Confidence 03567777777777777777776666555432210
Q ss_pred CCcccceEEEEechhhHHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhc
Q 008602 384 LPPALKHYYCVTKLQHKVDTLRRCVHAL--DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN 461 (560)
Q Consensus 384 ~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~ 461 (560)
.......+.......|...|.+.+... .+.++||||+++..++.++..|.+.++++..+||.+. +++..+..|..
T Consensus 443 -~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag 519 (656)
T PRK12898 443 -QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAG 519 (656)
T ss_pred -cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcC
Confidence 011222334455667888888888663 3678999999999999999999999999999999865 45555556666
Q ss_pred CCceEEEEecCcccCCCCC---CCC-----EEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHH
Q 008602 462 GEVRVLVTNELSARGLDVA---ECD-----LVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 462 g~~~iLvaT~~~~~Gidip---~v~-----~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
++..|+|||++++||+||+ +|. +||+|+.|.|...|.||+||+||.|.+|.+++|++.+|.-+
T Consensus 520 ~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 520 QRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred CCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 6668999999999999999 666 99999999999999999999999999999999999876443
No 66
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.2e-36 Score=319.36 Aligned_cols=336 Identities=22% Similarity=0.290 Sum_probs=247.2
Q ss_pred CCCHHHHHHHHhCCCCCChHHHHHHHhhhh-cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeE
Q 008602 116 GLPPLLLERLEREGFNVPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194 (560)
Q Consensus 116 ~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~-~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 194 (560)
.+.+.+.+.+...++.++.+.|+.++.... +++|+|||+|||||||++++++++..+. ..+.++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~---------------~~~~k~ 79 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL---------------EGGGKV 79 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH---------------hcCCcE
Confidence 366777777888888888888988887644 4699999999999999999999999983 235779
Q ss_pred EEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEe
Q 008602 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLD 274 (560)
Q Consensus 195 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiD 274 (560)
+++||+++||.+.+++|+ .+...+.. +...+|+....... + ..++|+|+||+++..++++.......+++||||
T Consensus 80 vYivPlkALa~Ek~~~~~-~~~~~Gir-V~~~TgD~~~~~~~--l--~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViD 153 (766)
T COG1204 80 VYIVPLKALAEEKYEEFS-RLEELGIR-VGISTGDYDLDDER--L--ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVID 153 (766)
T ss_pred EEEeChHHHHHHHHHHhh-hHHhcCCE-EEEecCCcccchhh--h--ccCCEEEEchHHhhHhhhcCcchhhcccEEEEe
Confidence 999999999999999999 44444443 77777776654422 2 245799999999999888888888899999999
Q ss_pred chhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCC
Q 008602 275 EIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354 (560)
Q Consensus 275 E~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (560)
|+|.+.+...+..++.+..+..... ...+++++|||++ +...++.+....+. ....+..++..
T Consensus 154 EiH~l~d~~RG~~lE~iv~r~~~~~--------------~~~rivgLSATlp-N~~evA~wL~a~~~-~~~~rp~~l~~- 216 (766)
T COG1204 154 EIHLLGDRTRGPVLESIVARMRRLN--------------ELIRIVGLSATLP-NAEEVADWLNAKLV-ESDWRPVPLRR- 216 (766)
T ss_pred eeeecCCcccCceehhHHHHHHhhC--------------cceEEEEEeeecC-CHHHHHHHhCCccc-ccCCCCccccc-
Confidence 9998666668888888888876432 4479999999996 56666665544433 11111111100
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEe------chhhHHHHHHHHHHh-cCCCeEEEEEcChhhHH
Q 008602 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVT------KLQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~k~~~l~~~~~~-~~~~~~iif~~~~~~~~ 427 (560)
... .....+... +.......+..++.. ..+++++|||+++..+.
T Consensus 217 -~v~----------------------------~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~ 267 (766)
T COG1204 217 -GVP----------------------------YVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAE 267 (766)
T ss_pred -CCc----------------------------cceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHH
Confidence 000 000011111 001112222222222 35789999999999999
Q ss_pred HHHHHHHHC-------------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEe
Q 008602 428 DAVFKLEAR-------------------------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN 470 (560)
Q Consensus 428 ~~~~~L~~~-------------------------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT 470 (560)
..++.+... ...++++|++|+.++|..+.+.|+.|+++|||||
T Consensus 268 ~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~T 347 (766)
T COG1204 268 KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVST 347 (766)
T ss_pred HHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEec
Confidence 998888730 0126788999999999999999999999999999
Q ss_pred cCcccCCCCCCCCEEE----Ecc-----CCCChhhhHhhhccccCCCC--cceEEEEec
Q 008602 471 ELSARGLDVAECDLVV----NLD-----LPTDSIHYAHRAGRTGRLGR--RGTVVSICE 518 (560)
Q Consensus 471 ~~~~~Gidip~v~~VI----~~~-----~p~s~~~y~Qr~GR~gR~g~--~g~~~~l~~ 518 (560)
++++.|+|+|.-.+|| .|+ .+-+..+++|+.|||||.|- .|.++++.+
T Consensus 348 pTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 348 PTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred hHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 9999999999777776 566 45578899999999999874 577888773
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.2e-36 Score=316.53 Aligned_cols=336 Identities=15% Similarity=0.174 Sum_probs=233.9
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.|. .|+++|..+...+.+|+ ++.+.||+|||++|++|++... ..|++|+|++||++||.|.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~a----------------l~G~~v~VvTpt~~LA~qd 135 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNA----------------LEGKGVHLITVNDYLAKRD 135 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHH----------------HcCCCeEEEeCCHHHHHHH
Confidence 377 89999999999888875 9999999999999999998665 4577899999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcCC------ccCCCeeEEEEechhhhh
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAGK------LHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~~------~~~~~l~llIiDE~h~l~ 280 (560)
++++..++...+. .++++.|+.+...+.... ..++|++|||+.| .+++.... ..++.+.++||||||.|+
T Consensus 136 ~e~~~~l~~~lGl-~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 136 AEEMGQVYEFLGL-TVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHHHHHhhcCC-eEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999887654 477888887744444433 3578999999999 45444332 345788999999999854
Q ss_pred -c---------------cchHHHHHHHHHHhccCCCC--CCCCch---hh----------------------------hh
Q 008602 281 -S---------------FNFREAMHRIVEHVGRRSGA--NPREPK---SA----------------------------LA 311 (560)
Q Consensus 281 -~---------------~~~~~~l~~i~~~~~~~~~~--~~~~~~---~~----------------------------~~ 311 (560)
| ......+..+...+...... ...... .. .+
T Consensus 213 iDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~A 292 (790)
T PRK09200 213 LDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILA 292 (790)
T ss_pred eccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHH
Confidence 1 12333344444444211000 000000 00 00
Q ss_pred hc------cC-------------------------------------------------------------ceEEEEEee
Q 008602 312 MR------AE-------------------------------------------------------------RQTIMVSAT 324 (560)
Q Consensus 312 ~~------~~-------------------------------------------------------------~~~l~~SAT 324 (560)
.+ .+ .++.+||+|
T Consensus 293 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGT 372 (790)
T PRK09200 293 LRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGT 372 (790)
T ss_pred HHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCC
Confidence 00 00 012222222
Q ss_pred CChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCccc--ceEEEEechhhHHH
Q 008602 325 VPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPAL--KHYYCVTKLQHKVD 402 (560)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~ 402 (560)
......++...|.-+...+ ....|... ..-........|..
T Consensus 373 a~t~~~e~~~~Y~l~v~~I-------------------------------------Pt~kp~~r~d~~~~i~~~~~~K~~ 415 (790)
T PRK09200 373 AKTEEKEFFEVYNMEVVQI-------------------------------------PTNRPIIRIDYPDKVFVTLDEKYK 415 (790)
T ss_pred ChHHHHHHHHHhCCcEEEC-------------------------------------CCCCCcccccCCCeEEcCHHHHHH
Confidence 2111111111111111000 00000000 01122344566778
Q ss_pred HHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCC-
Q 008602 403 TLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDV- 479 (560)
Q Consensus 403 ~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidi- 479 (560)
.+...+.. ..+.++||||+++..++.++..|.+.++++..+||.+.+.++..+...+..| .|+|||++++||+||
T Consensus 416 al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~ 493 (790)
T PRK09200 416 AVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIK 493 (790)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCC
Confidence 88777765 3678999999999999999999999999999999999998888888777766 799999999999999
Q ss_pred --CCCC-----EEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHH
Q 008602 480 --AECD-----LVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 480 --p~v~-----~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
|+|. +||+|+.|.|...|.||+||+||.|.+|.++.|++.+|.-+
T Consensus 494 l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~ 545 (790)
T PRK09200 494 LGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLL 545 (790)
T ss_pred cccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHH
Confidence 6998 99999999999999999999999999999999998776433
No 68
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.8e-35 Score=328.95 Aligned_cols=309 Identities=20% Similarity=0.242 Sum_probs=211.6
Q ss_pred HHHHHHh-CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc
Q 008602 121 LLERLER-EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199 (560)
Q Consensus 121 l~~~l~~-~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 199 (560)
+.+.+.+ .|+ .||++|..+++.++.|+|++++||||+|||. |.+++...+. ..+++++|++|
T Consensus 67 f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~---------------~~g~~vLIL~P 129 (1171)
T TIGR01054 67 FEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLA---------------KKGKRCYIILP 129 (1171)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHH---------------hcCCeEEEEeC
Confidence 3444554 455 8999999999999999999999999999997 5556555441 23678999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCce--EEEEecCCChhHH---HHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEe
Q 008602 200 SRELGMQIVREIKKLLGPSDKKA--VQQLVGGANRSRQ---EEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLD 274 (560)
Q Consensus 200 t~~La~Q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiD 274 (560)
|++||.|+++.+.++....+... +..++|+.+...+ ...+.++.++|+|+||++|.+.+... .. +++++|+|
T Consensus 130 TreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvD 206 (1171)
T TIGR01054 130 TTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVD 206 (1171)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEe
Confidence 99999999999999876544332 3346677766554 44566777999999999998865542 12 78999999
Q ss_pred chhhhhc-----------cchHHH-HHHHHHHhccCCCCCCC-----CchhhhhhccCce--EEEEEeeC-ChHHHHHHH
Q 008602 275 EIDELLS-----------FNFREA-MHRIVEHVGRRSGANPR-----EPKSALAMRAERQ--TIMVSATV-PFSVIRAAR 334 (560)
Q Consensus 275 E~h~l~~-----------~~~~~~-l~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~l~~SAT~-~~~~~~~~~ 334 (560)
|||+|++ .+|.+. ++.+++.+.......-. ........+..+| ++++|||. +..+..
T Consensus 207 EaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~--- 283 (1171)
T TIGR01054 207 DVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA--- 283 (1171)
T ss_pred ChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---
Confidence 9999988 466553 55554433210000000 0000000112333 67789995 433221
Q ss_pred HcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCC
Q 008602 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414 (560)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~ 414 (560)
.+..++..+..+. .......+.+.+..... +...+.+++... +.
T Consensus 284 ~l~r~ll~~~v~~---------------------------------~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~ 327 (1171)
T TIGR01054 284 KLFRELLGFEVGG---------------------------------GSDTLRNVVDVYVEDED--LKETLLEIVKKL-GT 327 (1171)
T ss_pred HHcccccceEecC---------------------------------ccccccceEEEEEeccc--HHHHHHHHHHHc-CC
Confidence 1222222221110 00111233444433222 234566666654 46
Q ss_pred eEEEEEcCh---hhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEe----cCcccCCCCCC-CCEEE
Q 008602 415 TVIAFMNNT---RQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTN----ELSARGLDVAE-CDLVV 486 (560)
Q Consensus 415 ~~iif~~~~---~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT----~~~~~Gidip~-v~~VI 486 (560)
++||||++. +.++.++..|.+.|+++..+||+|+ +.++++|++|+++||||| ++++||||+|+ +++||
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI 403 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAV 403 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEE
Confidence 899999998 9999999999999999999999997 368999999999999995 89999999999 89999
Q ss_pred EccCCC
Q 008602 487 NLDLPT 492 (560)
Q Consensus 487 ~~~~p~ 492 (560)
|||+|.
T Consensus 404 ~~~~P~ 409 (1171)
T TIGR01054 404 FLGVPK 409 (1171)
T ss_pred EECCCC
Confidence 999874
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=319.91 Aligned_cols=371 Identities=19% Similarity=0.284 Sum_probs=278.4
Q ss_pred CHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEE
Q 008602 118 PPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIV 197 (560)
Q Consensus 118 ~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil 197 (560)
...+...+.+.|...++++|.+|+..+.+|+++||+.+||||||++|++|+++++.. +...++|++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~--------------~~~a~AL~l 121 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR--------------DPSARALLL 121 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh--------------CcCccEEEE
Confidence 344577788888888999999999999999999999999999999999999999854 223379999
Q ss_pred ccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC----ccCCCeeEEEE
Q 008602 198 APSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK----LHTHGCRFLVL 273 (560)
Q Consensus 198 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~----~~~~~l~llIi 273 (560)
.||++||+.+.++|+++....+.......++|+........+..+.|+|+++||.+|..++-... ..++++++||+
T Consensus 122 YPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVv 201 (851)
T COG1205 122 YPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVV 201 (851)
T ss_pred echhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEE
Confidence 99999999999999999887775444556777777777778888999999999999988443322 34578999999
Q ss_pred echhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCC
Q 008602 274 DEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLES 353 (560)
Q Consensus 274 DE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (560)
||+|. ....|+..+-.+++++.+.....+ +..|+++.|||+..........+..+-.........+
T Consensus 202 DElHt-YrGv~GS~vA~llRRL~~~~~~~~----------~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~--- 267 (851)
T COG1205 202 DELHT-YRGVQGSEVALLLRRLLRRLRRYG----------SPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSP--- 267 (851)
T ss_pred eccee-ccccchhHHHHHHHHHHHHHhccC----------CCceEEEEeccccChHHHHHHhcCCcceeeccCCCCC---
Confidence 99996 666777777777777665444333 6789999999998666555555544433312111111
Q ss_pred CCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEec---------hhhHHHHHHHHHHh--cCCCeEEEEEcC
Q 008602 354 MPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK---------LQHKVDTLRRCVHA--LDAQTVIAFMNN 422 (560)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~~~~--~~~~~~iif~~~ 422 (560)
...+.++.... .......+..+... .++-++|+|+.+
T Consensus 268 --------------------------------~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~s 315 (851)
T COG1205 268 --------------------------------RGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRS 315 (851)
T ss_pred --------------------------------CCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEeh
Confidence 11111111111 11222222233322 358899999999
Q ss_pred hhhHHHHH----HHHHHCC----CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC-C
Q 008602 423 TRQLKDAV----FKLEARG----MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT-D 493 (560)
Q Consensus 423 ~~~~~~~~----~~L~~~~----~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~-s 493 (560)
+..++.+. ..+...+ ..+..++|+|...+|.++...|++|+..++++|+.++-|+||.+++.||.++.|. +
T Consensus 316 r~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s 395 (851)
T COG1205 316 RKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVS 395 (851)
T ss_pred hhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCch
Confidence 99999986 4444444 5688999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhHhhhccccCCCCcceEEEEec--CccHHHHHHHHHHhC---CCccccccCCCceee
Q 008602 494 SIHYAHRAGRTGRLGRRGTVVSICE--EPEVFVVKKMQKQLA---VPIQACEFTEGRLVI 548 (560)
Q Consensus 494 ~~~y~Qr~GR~gR~g~~g~~~~l~~--~~e~~~~~~l~~~l~---~~~~~~~~~~~~~~~ 548 (560)
..++.||.||+||.++.+..+.+.. +-|.++...-...+. ...+...+..++...
T Consensus 396 ~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~~~~~~~e~~~~~~~n~~~ 455 (851)
T COG1205 396 VLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLETGFGPVESVRVDDNNEYL 455 (851)
T ss_pred HHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhhcccCcccccccCCCCcch
Confidence 9999999999999987666666654 336666666666666 555555555554433
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.4e-35 Score=304.45 Aligned_cols=363 Identities=15% Similarity=0.175 Sum_probs=231.6
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.|. .|++.|..+...+..|+ +..++||+|||++|++|++... ..|.+|+|++||++||.|.
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~a----------------L~G~~V~VvTpt~~LA~qd 113 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNA----------------LTGKGVHVVTVNDYLAQRD 113 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHH----------------HhCCCEEEEcCCHHHHHHH
Confidence 377 89999999988888775 9999999999999999996444 2355699999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcC------CccCCCeeEEEEechhhhh
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAG------KLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~------~~~~~~l~llIiDE~h~l~ 280 (560)
++++..++...+. .++++.++.+....... ..++|+||||+.| .+++..+ ...++.+.++||||+|+|+
T Consensus 114 ae~~~~l~~~LGL-sv~~i~g~~~~~~r~~~---y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 114 AEWMGQVYRFLGL-SVGLILSGMSPEERREA---YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred HHHHHHHhccCCC-eEEEEeCCCCHHHHHHh---cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 9999999887654 47788888776544433 3478999999999 7777665 3467889999999999865
Q ss_pred ccc----------------hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEe--------------eCCh---
Q 008602 281 SFN----------------FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSA--------------TVPF--- 327 (560)
Q Consensus 281 ~~~----------------~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SA--------------T~~~--- 327 (560)
-.. .......+.+.+.....+.- ....+.+.++. -+..
T Consensus 190 IDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~---------de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~ 260 (745)
T TIGR00963 190 IDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEV---------DEKNRAVLLTEKGIKKAEDLLGVDNLYDLENS 260 (745)
T ss_pred HHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEE---------ecCCCceeECHHHHHHHHHHcCCccccChhhh
Confidence 311 11112222222221100000 00001111111 0000
Q ss_pred ----HHHHHHH---HcCCCCe--------EEe---eccccc-------------------c------------CC-CCC-
Q 008602 328 ----SVIRAAR---SWGHDPL--------LVQ---AKNVIP-------------------L------------ES-MPA- 356 (560)
Q Consensus 328 ----~~~~~~~---~~~~~~~--------~~~---~~~~~~-------------------~------------~~-~~~- 356 (560)
.+....+ .+..+-. .+. +++..+ + .. +..
T Consensus 261 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y 340 (745)
T TIGR00963 261 PLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLY 340 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhC
Confidence 0000000 0111100 000 000000 0 00 000
Q ss_pred CCCCCCCCCCCCCC----CCcchhhhcccccCCccc--ceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHH
Q 008602 357 TGPGNLSGPMSGSS----SNSNLQAKQADQSLPPAL--KHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 357 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~ 428 (560)
.....++....... ...+..........+... ..-........|..++.+.+.. ..+.++||||+++..++.
T Consensus 341 ~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ 420 (745)
T TIGR00963 341 EKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSEL 420 (745)
T ss_pred chhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 00001111110000 000000000000000000 0011223344566666555532 468999999999999999
Q ss_pred HHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCC-------CCEEEEccCCCChhhhHhhh
Q 008602 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAE-------CDLVVNLDLPTDSIHYAHRA 501 (560)
Q Consensus 429 ~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~-------v~~VI~~~~p~s~~~y~Qr~ 501 (560)
++..|.+.++++..+|+. +.+|+..+..|..+...|+|||++++||+||+. .-+||+++.|.|...|.|++
T Consensus 421 ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~ 498 (745)
T TIGR00963 421 LSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLR 498 (745)
T ss_pred HHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHh
Confidence 999999999999999998 889999999999999999999999999999998 55999999999999999999
Q ss_pred ccccCCCCcceEEEEecCccHHH
Q 008602 502 GRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 502 GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
||+||.|.+|.+..|++.+|.-+
T Consensus 499 GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 499 GRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred ccccCCCCCcceEEEEeccHHHH
Confidence 99999999999999998887544
No 71
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.5e-35 Score=322.27 Aligned_cols=315 Identities=17% Similarity=0.253 Sum_probs=217.6
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+.+....+.+..+.+++.++|+|+||||||++ +|.+..... ......+++..|.|..|..++.++
T Consensus 74 Pi~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g-------------~g~~g~I~~TQPRRlAArsLA~RV 138 (1294)
T PRK11131 74 PVSQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELG-------------RGVKGLIGHTQPRRLAARTVANRI 138 (1294)
T ss_pred CHHHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcC-------------CCCCCceeeCCCcHHHHHHHHHHH
Confidence 44666777888888888899999999999995 563332210 111235777889765555555555
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh-hhhccchHHH-HH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID-ELLSFNFREA-MH 289 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h-~l~~~~~~~~-l~ 289 (560)
.+.++...+..+++-+...+.. +..+.|+|+|||+|.+.+..+.. ++++++||||||| ++++.+|... ++
T Consensus 139 A~El~~~lG~~VGY~vrf~~~~-------s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk 210 (1294)
T PRK11131 139 AEELETELGGCVGYKVRFNDQV-------SDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLK 210 (1294)
T ss_pred HHHHhhhhcceeceeecCcccc-------CCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHH
Confidence 4444332222344333222211 23467999999999998876544 8999999999999 7888887643 34
Q ss_pred HHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCC
Q 008602 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGS 369 (560)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (560)
.++.. +++.|+++||||++. ..+.+.|...|.+...+...++...+....
T Consensus 211 ~lL~~------------------rpdlKvILmSATid~--e~fs~~F~~apvI~V~Gr~~pVei~y~p~~---------- 260 (1294)
T PRK11131 211 ELLPR------------------RPDLKVIITSATIDP--ERFSRHFNNAPIIEVSGRTYPVEVRYRPIV---------- 260 (1294)
T ss_pred Hhhhc------------------CCCceEEEeeCCCCH--HHHHHHcCCCCEEEEcCccccceEEEeecc----------
Confidence 43321 357899999999954 578888877776554443333221100000
Q ss_pred CCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHH---HhcCCCeEEEEEcChhhHHHHHHHHHHCCCc---eeec
Q 008602 370 SSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV---HALDAQTVIAFMNNTRQLKDAVFKLEARGMK---AAEL 443 (560)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~---~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~---~~~l 443 (560)
.. ........+..+...+ .....+.+|||+++..+++.+++.|.+.+++ +.++
T Consensus 261 -------------------~~--~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpL 319 (1294)
T PRK11131 261 -------------------EE--ADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPL 319 (1294)
T ss_pred -------------------cc--cchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeec
Confidence 00 0000011222222222 2235689999999999999999999987654 7789
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC---------------C---CChhhhHhhhcccc
Q 008602 444 HGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL---------------P---TDSIHYAHRAGRTG 505 (560)
Q Consensus 444 hg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~---------------p---~s~~~y~Qr~GR~g 505 (560)
||+|++.+|.++++. .|..+|||||+++++|||||++++||+++. | .|.++|.||+||+|
T Consensus 320 hg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAG 397 (1294)
T PRK11131 320 YARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 397 (1294)
T ss_pred ccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccC
Confidence 999999999999986 588999999999999999999999999863 3 35588999999999
Q ss_pred CCCCcceEEEEecCccHH
Q 008602 506 RLGRRGTVVSICEEPEVF 523 (560)
Q Consensus 506 R~g~~g~~~~l~~~~e~~ 523 (560)
|. .+|.||.+|++.+..
T Consensus 398 R~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 398 RV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred CC-CCcEEEEeCCHHHHH
Confidence 99 789999999977643
No 72
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-36 Score=282.71 Aligned_cols=334 Identities=26% Similarity=0.347 Sum_probs=237.1
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEE--EEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ--QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++++|+-|+|+||+|.++.++++-.......+. .++||.-...|...++.|. +|+|+||+++.+....+.+.+.
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~-~ivvGtpgRl~~~is~g~~~lt 362 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGT-HIVVGTPGRLLQPISKGLVTLT 362 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCc-eeeecCchhhhhhhhccceeee
Confidence 345789999999999999999666653322222222 5778888888888888875 7999999999999999999999
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC-hHHHHHHHHcCCCCeEEee
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP-FSVIRAARSWGHDPLLVQA 345 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~-~~~~~~~~~~~~~~~~~~~ 345 (560)
.+.++|+||++.+++.++-+.+.++...++...... ...|.++.|||+. .++..+....++-|..+..
T Consensus 363 ~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg-----------~rlq~~vCsatlh~feVkk~~ervmhfptwVdL 431 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG-----------FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDL 431 (725)
T ss_pred eeEEEEecchhhhhhcccHHHHHHHhccchhhhcCC-----------cccccceeeeEEeEEEeeehhhhhccCceeEec
Confidence 999999999999999999998888888876544332 3468999999984 4566666667777777654
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEE-----echhh-----HHHHHHHHHHhcCCCe
Q 008602 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV-----TKLQH-----KVDTLRRCVHALDAQT 415 (560)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----k~~~l~~~~~~~~~~~ 415 (560)
.....++...-....-.-.......... .+...... -..+.+... ...+. +-+.-...+.++...+
T Consensus 432 kgeD~vpetvHhvv~lv~p~~d~sw~~l-r~~i~td~---vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdk 507 (725)
T KOG0349|consen 432 KGEDLVPETVHHVVKLVCPSVDGSWCDL-RQFIETDK---VHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDK 507 (725)
T ss_pred ccccccchhhccceeecCCccCccHHHH-hhhhccCC---cccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCc
Confidence 4332222111000000000000000000 00000000 000000000 00000 1111112334455689
Q ss_pred EEEEEcChhhHHHHHHHHHHCC---CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC
Q 008602 416 VIAFMNNTRQLKDAVFKLEARG---MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT 492 (560)
Q Consensus 416 ~iif~~~~~~~~~~~~~L~~~~---~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~ 492 (560)
.||||.+..+++.+.+++.+.+ +.+..+||+..+.+|...++.|+.+..++||||+++++|+||..+.++|+.-+|.
T Consensus 508 aiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd 587 (725)
T KOG0349|consen 508 AIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD 587 (725)
T ss_pred eEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc
Confidence 9999999999999999999874 7899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccc
Q 008602 493 DSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQA 538 (560)
Q Consensus 493 s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~ 538 (560)
+-..|+||+||+||+.+-|.++.++...-.+.....++..|....-
T Consensus 588 ~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~n 633 (725)
T KOG0349|consen 588 DKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNN 633 (725)
T ss_pred ccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccC
Confidence 9999999999999999999999998766666666677766664443
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.6e-35 Score=305.56 Aligned_cols=362 Identities=15% Similarity=0.152 Sum_probs=221.5
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|. .|++.| ++..+.-++..++.++||+|||++|++|++... ..|+.++|++|+++||.|++
T Consensus 68 gl-rpydVQ--lig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~a----------------L~g~~V~VVTpn~yLA~Rda 128 (762)
T TIGR03714 68 GM-FPYDVQ--VLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNA----------------LTGKGAMLVTTNDYLAKRDA 128 (762)
T ss_pred CC-CccHHH--HHHHHHhcCCceeEecCCcchHHHHHHHHHHHh----------------hcCCceEEeCCCHHHHHHHH
Confidence 44 455555 555444444579999999999999999987766 33556999999999999999
Q ss_pred HHHHHHhCCCCCceEEEEecCC---ChhHHHHHHHcCCCcEEEeCchHH-HHHHHc------CCccCCCeeEEEEechhh
Q 008602 209 REIKKLLGPSDKKAVQQLVGGA---NRSRQEEALRKNKPAIVVGTPGRI-AEISAA------GKLHTHGCRFLVLDEIDE 278 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~------~~~~~~~l~llIiDE~h~ 278 (560)
+++..+....+.. ++..+++. +........ ...++|++|||+.| .+.+.. ....++.+.++|+||||.
T Consensus 129 e~m~~l~~~LGLs-v~~~~~~s~~~~~~~~~rr~-~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDs 206 (762)
T TIGR03714 129 EEMGPVYEWLGLT-VSLGVVDDPDEEYDANEKRK-IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDS 206 (762)
T ss_pred HHHHHHHhhcCCc-EEEEECCCCccccCHHHHHH-hCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhh
Confidence 9998887766554 55555542 122222222 24679999999999 444432 234567899999999998
Q ss_pred hhcc----------------chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEee--------------CChH
Q 008602 279 LLSF----------------NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT--------------VPFS 328 (560)
Q Consensus 279 l~~~----------------~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT--------------~~~~ 328 (560)
|+-. .....+..+...+.......- ....+.+.+|.. ..+.
T Consensus 207 ILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~---------d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~ 277 (762)
T TIGR03714 207 VLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIF---------KKDKKEVWLTDKGIEKAEQYFKIDNLYSEE 277 (762)
T ss_pred HhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEE---------EcCCCeeeecHhHHHHHHHHcCCCccCChh
Confidence 7521 133334444444432100000 000111111111 0000
Q ss_pred H-------HHHH---HHcCCCCeE--------Ee---eccccc-------------------------------cCCCCC
Q 008602 329 V-------IRAA---RSWGHDPLL--------VQ---AKNVIP-------------------------------LESMPA 356 (560)
Q Consensus 329 ~-------~~~~---~~~~~~~~~--------~~---~~~~~~-------------------------------~~~~~~ 356 (560)
. .... ..+..+... +. +++..+ ...+ .
T Consensus 278 ~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~-F 356 (762)
T TIGR03714 278 YFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNL-F 356 (762)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHH-H
Confidence 0 0000 001111000 00 000000 0000 1
Q ss_pred CCCCCCCCCCCCCCC-------CcchhhhcccccCCcccc--eEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhh
Q 008602 357 TGPGNLSGPMSGSSS-------NSNLQAKQADQSLPPALK--HYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQ 425 (560)
Q Consensus 357 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~ 425 (560)
..+..+......... ..+..........|.... .-........|..++.+.+.. ..+.++||||+++..
T Consensus 357 r~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 357 KMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEM 436 (762)
T ss_pred hhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHH
Confidence 111111111000000 000000000000010000 112344455677777777755 467899999999999
Q ss_pred HHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCC---------CCCEEEEccCCCChhh
Q 008602 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA---------ECDLVVNLDLPTDSIH 496 (560)
Q Consensus 426 ~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip---------~v~~VI~~~~p~s~~~ 496 (560)
++.+...|.+.++++..+||.+.+.++..+...|+.| .|+|||++++||+||| ++++|++|++|....+
T Consensus 437 se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid 514 (762)
T TIGR03714 437 SEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD 514 (762)
T ss_pred HHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH
Confidence 9999999999999999999999999888888777777 7999999999999999 9999999999998777
Q ss_pred hHhhhccccCCCCcceEEEEecCccHHH
Q 008602 497 YAHRAGRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 497 y~Qr~GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
.||+||+||.|.+|.++.|++.+|.-+
T Consensus 515 -~qr~GRtGRqG~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 515 -LQLRGRSGRQGDPGSSQFFVSLEDDLI 541 (762)
T ss_pred -HHhhhcccCCCCceeEEEEEccchhhh
Confidence 999999999999999999998876443
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.2e-36 Score=312.72 Aligned_cols=329 Identities=16% Similarity=0.188 Sum_probs=214.6
Q ss_pred CChHHHHHHHhhhhc-C--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILK-N--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~-~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
.++|||.+|+..+.. + +..++++|||+|||++++..+.. + +.++|||||+..|+.||.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l------------------~k~tLILvps~~Lv~QW~ 315 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V------------------KKSCLVLCTSAVSVEQWK 315 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h------------------CCCEEEEeCcHHHHHHHH
Confidence 789999999999875 3 47899999999999998766543 2 134999999999999999
Q ss_pred HHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc--------CCccCCCeeEEEEechhhhh
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA--------GKLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~--------~~~~~~~l~llIiDE~h~l~ 280 (560)
++|.+++..... .+..+.|+.... . .+..+|+|+|++.+...... ..+.-..+++||+||||++.
T Consensus 316 ~ef~~~~~l~~~-~I~~~tg~~k~~-----~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp 388 (732)
T TIGR00603 316 QQFKMWSTIDDS-QICRFTSDAKER-----F-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP 388 (732)
T ss_pred HHHHHhcCCCCc-eEEEEecCcccc-----c-ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc
Confidence 999998643333 355555542211 0 12346999999988642211 11223468999999999975
Q ss_pred ccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHH-HHcCCCCeEEeeccccccCCCCCCCC
Q 008602 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAA-RSWGHDPLLVQAKNVIPLESMPATGP 359 (560)
Q Consensus 281 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (560)
...|. +++..+ .....+++||||..+..... ..++..|.+...+...-.........
T Consensus 389 A~~fr----~il~~l------------------~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~ 446 (732)
T TIGR00603 389 AAMFR----RVLTIV------------------QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANV 446 (732)
T ss_pred HHHHH----HHHHhc------------------CcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccc
Confidence 43333 344333 22357999999963322111 12223343332211100000000000
Q ss_pred --CCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHH
Q 008602 360 --GNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL--DAQTVIAFMNNTRQLKDAVFKLEA 435 (560)
Q Consensus 360 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~iif~~~~~~~~~~~~~L~~ 435 (560)
..+...... .. ....... ..............|...+..++..+ .+.++||||+++..+..++..|
T Consensus 447 ~~~ev~v~~t~----~~-~~~yl~~---~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-- 516 (732)
T TIGR00603 447 QCAEVWCPMTP----EF-YREYLRE---NSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-- 516 (732)
T ss_pred eEEEEEecCCH----HH-HHHHHHh---cchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc--
Confidence 000000000 00 0000000 00000111123446777777777654 6789999999999999888877
Q ss_pred CCCceeeccCCCCHHHHHHHHHHhhcC-CceEEEEecCcccCCCCCCCCEEEEccCC-CChhhhHhhhccccCCCCcceE
Q 008602 436 RGMKAAELHGDLGKLARSTTLKKFKNG-EVRVLVTNELSARGLDVAECDLVVNLDLP-TDSIHYAHRAGRTGRLGRRGTV 513 (560)
Q Consensus 436 ~~~~~~~lhg~~~~~~r~~v~~~F~~g-~~~iLvaT~~~~~Gidip~v~~VI~~~~p-~s~~~y~Qr~GR~gR~g~~g~~ 513 (560)
.+..+||++++.+|.++++.|++| .+++||+|+++.+|||+|++++||+++.| .|..+|+||+||++|.+..|.+
T Consensus 517 ---~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~ 593 (732)
T TIGR00603 517 ---GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDA 593 (732)
T ss_pred ---CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCcc
Confidence 256689999999999999999875 88999999999999999999999999987 5999999999999999765554
Q ss_pred -------EEEecCcc
Q 008602 514 -------VSICEEPE 521 (560)
Q Consensus 514 -------~~l~~~~e 521 (560)
|.|++.+.
T Consensus 594 ~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 594 EEYNAFFYSLVSKDT 608 (732)
T ss_pred ccccceEEEEecCCc
Confidence 88887664
No 75
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.2e-34 Score=319.96 Aligned_cols=353 Identities=22% Similarity=0.279 Sum_probs=236.8
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
.++++||..++..++.+ ++++++|||+|||++|++++...+. ..+.++||++||++|+.||++.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~---------------~~~~~vLvl~Pt~~L~~Q~~~~ 77 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH---------------KKGGKVLILAPTKPLVEQHAEF 77 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH---------------hCCCeEEEEeCcHHHHHHHHHH
Confidence 38999999999988887 9999999999999999999888761 2356799999999999999999
Q ss_pred HHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHH
Q 008602 211 IKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290 (560)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~ 290 (560)
++++++... ..+..+.|+..... ...+.. ..+|+|+||+.+...+..+.+.+.++++|||||||++.+......+..
T Consensus 78 ~~~~~~~~~-~~v~~~~g~~~~~~-r~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~ 154 (773)
T PRK13766 78 FRKFLNIPE-EKIVVFTGEVSPEK-RAELWE-KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAE 154 (773)
T ss_pred HHHHhCCCC-ceEEEEeCCCCHHH-HHHHHh-CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHH
Confidence 999875432 23555666555443 333332 346999999999887777788889999999999999766543333333
Q ss_pred HHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHH---HHHHHHcCCCCeEEeeccccccCCCCC-----------
Q 008602 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSV---IRAARSWGHDPLLVQAKNVIPLESMPA----------- 356 (560)
Q Consensus 291 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 356 (560)
.+... .....+++|||||.... ...........+.+.......+..+..
T Consensus 155 ~~~~~-----------------~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l 217 (773)
T PRK13766 155 RYHED-----------------AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVEL 217 (773)
T ss_pred HHHhc-----------------CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCC
Confidence 32221 13457999999985332 222222211111111000000000000
Q ss_pred CC---------------------CCCCCCCCCCCCCCcc-------hhhhcc----------------------------
Q 008602 357 TG---------------------PGNLSGPMSGSSSNSN-------LQAKQA---------------------------- 380 (560)
Q Consensus 357 ~~---------------------~~~~~~~~~~~~~~~~-------~~~~~~---------------------------- 380 (560)
.. ................ ......
T Consensus 218 ~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 297 (773)
T PRK13766 218 PEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLET 297 (773)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000000000000 000000
Q ss_pred ---------------cccC---C-------------cccceEEEEechhhHHHHHHHHHHh----cCCCeEEEEEcChhh
Q 008602 381 ---------------DQSL---P-------------PALKHYYCVTKLQHKVDTLRRCVHA----LDAQTVIAFMNNTRQ 425 (560)
Q Consensus 381 ---------------~~~~---~-------------~~~~~~~~~~~~~~k~~~l~~~~~~----~~~~~~iif~~~~~~ 425 (560)
.... . ..+...........|...|.+++.. ..+.++||||++...
T Consensus 298 ~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t 377 (773)
T PRK13766 298 QGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDT 377 (773)
T ss_pred hCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHH
Confidence 0000 0 0000000011223456666666654 467899999999999
Q ss_pred HHHHHHHHHHCCCceeeccCC--------CCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhh
Q 008602 426 LKDAVFKLEARGMKAAELHGD--------LGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497 (560)
Q Consensus 426 ~~~~~~~L~~~~~~~~~lhg~--------~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y 497 (560)
++.+.+.|...++.+..+||. |++.+|..++++|++|++++||||+++++|+|+|++++||+||+|++...|
T Consensus 378 ~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~ 457 (773)
T PRK13766 378 AEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRS 457 (773)
T ss_pred HHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 999999999999999999886 999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCCCcceEEEEecCc
Q 008602 498 AHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 498 ~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
+||+||+||.|. |.+|.++...
T Consensus 458 iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 458 IQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred HHHhcccCcCCC-CEEEEEEeCC
Confidence 999999999865 8888888644
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-34 Score=310.54 Aligned_cols=336 Identities=22% Similarity=0.213 Sum_probs=260.3
Q ss_pred HHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc
Q 008602 120 LLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199 (560)
Q Consensus 120 ~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 199 (560)
........+|+...+|-|.++|..++.|+|++|.+|||+||+++|.+|++-.- +-.|||.|
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~-------------------gitvVISP 312 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLG-------------------GVTVVISP 312 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccC-------------------CceEEecc
Confidence 33444567799999999999999999999999999999999999999987532 25899999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCceEEEEecCCCh---hHHHHHHHcC--CCcEEEeCchHHHHH--HHcCCccCCC---ee
Q 008602 200 SRELGMQIVREIKKLLGPSDKKAVQQLVGGANR---SRQEEALRKN--KPAIVVGTPGRIAEI--SAAGKLHTHG---CR 269 (560)
Q Consensus 200 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~--~~~IlI~Tp~~l~~~--l~~~~~~~~~---l~ 269 (560)
...|...+...+... ......+.++... ......+..+ ..+|+..||+.+... +......+.. +.
T Consensus 313 L~SLm~DQv~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~la 387 (941)
T KOG0351|consen 313 LISLMQDQVTHLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLA 387 (941)
T ss_pred HHHHHHHHHHhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeE
Confidence 999998888777432 1212233333322 2556667777 678999999999762 2222233444 88
Q ss_pred EEEEechhhhhcc--chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCC--CCeEEee
Q 008602 270 FLVLDEIDELLSF--NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH--DPLLVQA 345 (560)
Q Consensus 270 llIiDE~h~l~~~--~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~--~~~~~~~ 345 (560)
++||||||+...| +|++.++.+.....+ .+.+.++.+|||.+..+..-+...++ ++.+...
T Consensus 388 l~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~---------------~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~ 452 (941)
T KOG0351|consen 388 LFVIDEAHCVSQWGHDFRPSYKRLGLLRIR---------------FPGVPFIALTATATERVREDVIRSLGLRNPELFKS 452 (941)
T ss_pred EEEecHHHHhhhhcccccHHHHHHHHHHhh---------------CCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc
Confidence 9999999998888 478888777654432 24478999999999888877765433 3332221
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEech-hhHH-HHHHHHHHhcCCCeEEEEEcCh
Q 008602 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKL-QHKV-DTLRRCVHALDAQTVIAFMNNT 423 (560)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~-~~l~~~~~~~~~~~~iif~~~~ 423 (560)
++.+....|.+..+. .... ..+...-..+.++.+||||.++
T Consensus 453 -------------------------------------sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr 495 (941)
T KOG0351|consen 453 -------------------------------------SFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSR 495 (941)
T ss_pred -------------------------------------cCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCc
Confidence 112222233333333 2222 2233333346789999999999
Q ss_pred hhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcc
Q 008602 424 RQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGR 503 (560)
Q Consensus 424 ~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR 503 (560)
.+++++...|...++.+..||++|++.+|..|.++|..++++|+|||-++++|||.|+|+.||||..|+|.+.|+|-+||
T Consensus 496 ~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GR 575 (941)
T KOG0351|consen 496 KECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGR 575 (941)
T ss_pred chHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEEEecCccHHHHHHHHHH
Q 008602 504 TGRLGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 504 ~gR~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
|||.|....|++|+...|...+..+...
T Consensus 576 AGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 576 AGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred cCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999998888877665
No 77
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.3e-34 Score=307.46 Aligned_cols=330 Identities=20% Similarity=0.236 Sum_probs=222.7
Q ss_pred CChHHHHHHHhhhhcC---CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN---HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~---~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
.++++|+++++.+.++ +++++.|+||||||.+|+.++...+ ..|.++||++||++|+.|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l----------------~~g~~vLvLvPt~~L~~Q~~ 207 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL----------------AQGKQALVLVPEIALTPQML 207 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH----------------HcCCeEEEEeCcHHHHHHHH
Confidence 6899999999999884 7899999999999999999988877 44678999999999999999
Q ss_pred HHHHHHhCCCCCceEEEEecCCChh---HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccch-
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRS---RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF- 284 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~- 284 (560)
+++++.++. .+..+.++.+.. ..+..+.++.++|+|||++.+. ..++++++|||||+|.......
T Consensus 208 ~~l~~~fg~----~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~ 276 (679)
T PRK05580 208 ARFRARFGA----PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQE 276 (679)
T ss_pred HHHHHHhCC----CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCc
Confidence 999998742 255666665543 3455667788899999998773 5688999999999997432211
Q ss_pred --HHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccc-cccCCCCCCCCCC
Q 008602 285 --REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV-IPLESMPATGPGN 361 (560)
Q Consensus 285 --~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 361 (560)
.-....+... .+...+.+++++|||++.+....+............... .++...... +
T Consensus 277 ~p~y~~r~va~~---------------ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~i---d 338 (679)
T PRK05580 277 GPRYHARDLAVV---------------RAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEII---D 338 (679)
T ss_pred CCCCcHHHHHHH---------------HhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEE---e
Confidence 0011121110 112367899999999987777665532211111110000 000000000 0
Q ss_pred CCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcCh------------------
Q 008602 362 LSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNT------------------ 423 (560)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~------------------ 423 (560)
... ..... ... .-.....+.+.+.+. .+.++|+|+|++
T Consensus 339 ~~~------------------~~~~~--~~~--~ls~~l~~~i~~~l~--~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~ 394 (679)
T PRK05580 339 MRE------------------LLRGE--NGS--FLSPPLLEAIKQRLE--RGEQVLLFLNRRGYAPFLLCRDCGWVAECP 394 (679)
T ss_pred chh------------------hhhhc--ccC--CCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCCceEhhhCcCccCCC
Confidence 000 00000 000 000111222222222 245666666542
Q ss_pred ------------------------------------------hhHHHHHHHHHHC--CCceeeccCCCC--HHHHHHHHH
Q 008602 424 ------------------------------------------RQLKDAVFKLEAR--GMKAAELHGDLG--KLARSTTLK 457 (560)
Q Consensus 424 ------------------------------------------~~~~~~~~~L~~~--~~~~~~lhg~~~--~~~r~~v~~ 457 (560)
..++++++.|.+. +.++..+|+++. ..+++++++
T Consensus 395 ~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~ 474 (679)
T PRK05580 395 HCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLA 474 (679)
T ss_pred CCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHH
Confidence 2456778888876 788999999986 467899999
Q ss_pred HhhcCCceEEEEecCcccCCCCCCCCEEEEccCC--CCh----------hhhHhhhccccCCCCcceEEEEecCccHHHH
Q 008602 458 KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP--TDS----------IHYAHRAGRTGRLGRRGTVVSICEEPEVFVV 525 (560)
Q Consensus 458 ~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p--~s~----------~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~ 525 (560)
+|++|+.+|||+|+++++|+|+|++++|+.+|.+ .+. ..|.|++||+||.+..|.+++.+...+...+
T Consensus 475 ~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~ 554 (679)
T PRK05580 475 QFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVI 554 (679)
T ss_pred HHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHH
Confidence 9999999999999999999999999999765543 332 5689999999999999999999887776666
Q ss_pred HHHHH
Q 008602 526 KKMQK 530 (560)
Q Consensus 526 ~~l~~ 530 (560)
+.+.+
T Consensus 555 ~~~~~ 559 (679)
T PRK05580 555 QALLA 559 (679)
T ss_pred HHHHh
Confidence 55543
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.2e-34 Score=314.87 Aligned_cols=313 Identities=17% Similarity=0.250 Sum_probs=228.7
Q ss_pred ChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
.+....+.+..+.++..++|+|+||||||+. +|.+..-.. ......++++.|.|.-|..++.++.
T Consensus 68 i~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-------------~~~~~~I~~tQPRRlAA~svA~RvA 132 (1283)
T TIGR01967 68 VSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-------------RGSHGLIGHTQPRRLAARTVAQRIA 132 (1283)
T ss_pred HHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-------------CCCCceEecCCccHHHHHHHHHHHH
Confidence 3444556777787888999999999999996 344332110 1223468889999999999999999
Q ss_pred HHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh-hhhccchHHH-HHH
Q 008602 213 KLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID-ELLSFNFREA-MHR 290 (560)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h-~l~~~~~~~~-l~~ 290 (560)
+.++...+..+++-+...+.. +....|.|+|+|+|.+.+.... .++++++|||||+| ++++.++... ++.
T Consensus 133 ~elg~~lG~~VGY~vR~~~~~-------s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~ 204 (1283)
T TIGR01967 133 EELGTPLGEKVGYKVRFHDQV-------SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQ 204 (1283)
T ss_pred HHhCCCcceEEeeEEcCCccc-------CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHH
Confidence 988766556666544443332 2245699999999999887654 48899999999999 7888887654 466
Q ss_pred HHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCC
Q 008602 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSS 370 (560)
Q Consensus 291 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (560)
++.. +++.++++||||+. ...+...|...|.+...+...++...+.....
T Consensus 205 il~~------------------rpdLKlIlmSATld--~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~---------- 254 (1283)
T TIGR01967 205 LLPR------------------RPDLKIIITSATID--PERFSRHFNNAPIIEVSGRTYPVEVRYRPLVE---------- 254 (1283)
T ss_pred HHhh------------------CCCCeEEEEeCCcC--HHHHHHHhcCCCEEEECCCcccceeEEecccc----------
Confidence 6433 36789999999995 56888888877876655554443221100000
Q ss_pred CCcchhhhcccccCCcccceEEEEechhhHHHH----HHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCC---Cceeec
Q 008602 371 SNSNLQAKQADQSLPPALKHYYCVTKLQHKVDT----LRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARG---MKAAEL 443 (560)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~---~~~~~l 443 (560)
.. ......+.+. +..++. ...+.+|||+++..+++.++..|.+.+ +.+.++
T Consensus 255 ------------------~~---~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpL 312 (1283)
T TIGR01967 255 ------------------EQ---EDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPL 312 (1283)
T ss_pred ------------------cc---cchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEec
Confidence 00 0000112222 222222 246899999999999999999999864 458899
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC------------------ChhhhHhhhcccc
Q 008602 444 HGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT------------------DSIHYAHRAGRTG 505 (560)
Q Consensus 444 hg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~------------------s~~~y~Qr~GR~g 505 (560)
||+|++++|.++++.+ +..+|||||+++++|||||++++||+++.++ |.++|.||+||+|
T Consensus 313 hg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAG 390 (1283)
T TIGR01967 313 YARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 390 (1283)
T ss_pred cCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhC
Confidence 9999999999997754 3479999999999999999999999998543 5579999999999
Q ss_pred CCCCcceEEEEecCccHH
Q 008602 506 RLGRRGTVVSICEEPEVF 523 (560)
Q Consensus 506 R~g~~g~~~~l~~~~e~~ 523 (560)
|.+ +|.||.+|++.+..
T Consensus 391 R~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 391 RVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CCC-CceEEEecCHHHHH
Confidence 997 89999999876543
No 79
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=8.6e-35 Score=297.29 Aligned_cols=356 Identities=21% Similarity=0.266 Sum_probs=230.0
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
..++.||.+.+...+ ++++||++|||+|||++|+..+..++.. ..+.+|++++||+.|+.|+...
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw--------------~p~~KiVF~aP~~pLv~QQ~a~ 125 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW--------------RPKGKVVFLAPTRPLVNQQIAC 125 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc--------------CCcceEEEeeCCchHHHHHHHH
Confidence 389999999999888 9999999999999999999999999843 3346799999999999999977
Q ss_pred HHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCcc-CCCeeEEEEechhhhhccchHHHH-
Q 008602 211 IKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLH-THGCRFLVLDEIDELLSFNFREAM- 288 (560)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~-~~~l~llIiDE~h~l~~~~~~~~l- 288 (560)
++..+.+ ..+....||.........+.. ..+|+|+||+.+.+.+..+... ++++.++||||||+-....-...+
T Consensus 126 ~~~~~~~---~~~T~~l~~~~~~~~r~~i~~-s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vm 201 (746)
T KOG0354|consen 126 FSIYLIP---YSVTGQLGDTVPRSNRGEIVA-SKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIM 201 (746)
T ss_pred HhhccCc---ccceeeccCccCCCchhhhhc-ccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHH
Confidence 7766544 223344444222222222222 3479999999999988776654 589999999999996665444444
Q ss_pred HHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecc---------------ccccC-
Q 008602 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN---------------VIPLE- 352 (560)
Q Consensus 289 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~- 352 (560)
..++..-. ...|+|++||||.............--..+.... ..+..
T Consensus 202 r~~l~~k~-----------------~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~ 264 (746)
T KOG0354|consen 202 REYLDLKN-----------------QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDL 264 (746)
T ss_pred HHHHHhhh-----------------ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcH
Confidence 45554432 3339999999998555444332111000000000 00000
Q ss_pred ------------C-----CCCCCCCCCCCC--CCCCCCCcchhhhc-ccccCC----------------------cccce
Q 008602 353 ------------S-----MPATGPGNLSGP--MSGSSSNSNLQAKQ-ADQSLP----------------------PALKH 390 (560)
Q Consensus 353 ------------~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~----------------------~~~~~ 390 (560)
. +.......+... .............. .....+ ..++.
T Consensus 265 ~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~ 344 (746)
T KOG0354|consen 265 SLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRF 344 (746)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhh
Confidence 0 000000000000 00000000000000 000000 00000
Q ss_pred ---------EE--------------------------------E-EechhhHHHHHHHHHHh----cCCCeEEEEEcChh
Q 008602 391 ---------YY--------------------------------C-VTKLQHKVDTLRRCVHA----LDAQTVIAFMNNTR 424 (560)
Q Consensus 391 ---------~~--------------------------------~-~~~~~~k~~~l~~~~~~----~~~~~~iif~~~~~ 424 (560)
++ . ......|++.+.+.+.. ....++|||+..+.
T Consensus 345 ~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~ 424 (746)
T KOG0354|consen 345 VDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRE 424 (746)
T ss_pred HHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHH
Confidence 00 0 00112344444444432 34568999999999
Q ss_pred hHHHHHHHHHHC---CCceeeccC--------CCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCC
Q 008602 425 QLKDAVFKLEAR---GMKAAELHG--------DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTD 493 (560)
Q Consensus 425 ~~~~~~~~L~~~---~~~~~~lhg--------~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s 493 (560)
.+..+..+|.+. +++...+-| +|++.++.++++.|++|+++|||||+++++||||+.|+.||-||...|
T Consensus 425 sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~sn 504 (746)
T KOG0354|consen 425 SALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSN 504 (746)
T ss_pred HHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCcc
Confidence 999999999842 444444433 799999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhccccCCCCcceEEEEecCccHHH
Q 008602 494 SIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 494 ~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
+...+||+|| ||. +.|+|+++++..+...
T Consensus 505 pIrmIQrrGR-gRa-~ns~~vll~t~~~~~~ 533 (746)
T KOG0354|consen 505 PIRMVQRRGR-GRA-RNSKCVLLTTGSEVIE 533 (746)
T ss_pred HHHHHHHhcc-ccc-cCCeEEEEEcchhHHH
Confidence 9999999999 998 6799999998555443
No 80
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=298.52 Aligned_cols=345 Identities=22% Similarity=0.296 Sum_probs=252.2
Q ss_pred HhCCCCCChHHHHHHHhhhhc-CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 126 EREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 126 ~~~~~~~~~~~Q~~ai~~i~~-~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
.-++|..+..+|+.++|.+.. +.+.|||||||+|||-+|++.|+..+.. ..........+.++++++|+++||
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~------~~~~~~i~k~~fKiVYIaPmKALa 177 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE------HEEQGDIAKDDFKIVYIAPMKALA 177 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh------hccccccccCCceEEEEechHHHH
Confidence 345777899999999998776 6899999999999999999999998832 011122335678999999999999
Q ss_pred HHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC---ccCCCeeEEEEechhhhhc
Q 008602 205 MQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK---LHTHGCRFLVLDEIDELLS 281 (560)
Q Consensus 205 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~---~~~~~l~llIiDE~h~l~~ 281 (560)
..+++.|.+.+...+.. +.-++|+.+..+.. +. .++|+|+||+.+.-..+... ..++.+++|||||+|. +.
T Consensus 178 ~Em~~~~~kkl~~~gi~-v~ELTGD~ql~~te--i~--~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHl-Lh 251 (1230)
T KOG0952|consen 178 AEMVDKFSKKLAPLGIS-VRELTGDTQLTKTE--IA--DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHL-LH 251 (1230)
T ss_pred HHHHHHHhhhcccccce-EEEecCcchhhHHH--HH--hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehh-hc
Confidence 99999999999877655 67788887776655 32 35799999999865433222 3457899999999995 77
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCe---EEeeccccccCCCCCCC
Q 008602 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL---LVQAKNVIPLESMPATG 358 (560)
Q Consensus 282 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 358 (560)
...+..++.|+.++.+....+ .+..+++++|||+| +....+.+..-+|. ........|.
T Consensus 252 d~RGpvlEtiVaRtlr~vess----------qs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~~yRPv------- 313 (1230)
T KOG0952|consen 252 DDRGPVLETIVARTLRLVESS----------QSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQRYRPV------- 313 (1230)
T ss_pred CcccchHHHHHHHHHHHHHhh----------hhheEEEEeeccCC-CHHHHHHHhcCCCccceeeeccccccc-------
Confidence 789999999998887544433 36789999999997 55555554433322 1111111111
Q ss_pred CCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechh-----------hHHHHHHHHHHhcCCCeEEEEEcChhhHH
Q 008602 359 PGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQ-----------HKVDTLRRCVHALDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~k~~~l~~~~~~~~~~~~iif~~~~~~~~ 427 (560)
.+.+.+...+.. ...+.+.+.+ .++.+++|||.++....
T Consensus 314 ----------------------------pL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti 363 (1230)
T KOG0952|consen 314 ----------------------------PLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQVLVFVHSRNETI 363 (1230)
T ss_pred ----------------------------ceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCeEEEEEecChHHH
Confidence 111111111111 1222233333 35899999999999999
Q ss_pred HHHHHHHHC----C-------------------CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCE
Q 008602 428 DAVFKLEAR----G-------------------MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484 (560)
Q Consensus 428 ~~~~~L~~~----~-------------------~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~ 484 (560)
+.++.|.+. | .....+|+||...+|..+.+.|..|.++||+||..++.|+++|+-.+
T Consensus 364 ~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aV 443 (1230)
T KOG0952|consen 364 RTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAV 443 (1230)
T ss_pred HHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEE
Confidence 999888653 1 23567899999999999999999999999999999999999997666
Q ss_pred EE----EccCCC------ChhhhHhhhccccCC--CCcceEEEEecCccHHHHHHHHH
Q 008602 485 VV----NLDLPT------DSIHYAHRAGRTGRL--GRRGTVVSICEEPEVFVVKKMQK 530 (560)
Q Consensus 485 VI----~~~~p~------s~~~y~Qr~GR~gR~--g~~g~~~~l~~~~e~~~~~~l~~ 530 (560)
+| .||... ++.+..|..|||||. +..|.++++++.+....+..+..
T Consensus 444 iIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~ 501 (1230)
T KOG0952|consen 444 IIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLT 501 (1230)
T ss_pred EecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHc
Confidence 66 455544 557789999999995 46799999988776665555543
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8.2e-35 Score=273.05 Aligned_cols=337 Identities=20% Similarity=0.248 Sum_probs=248.1
Q ss_pred CCCC-ChHHHHHHHhhhhcC-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 129 GFNV-PTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 129 ~~~~-~~~~Q~~ai~~i~~~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
|+.. -++.|..|+..+..+ +|+.|++|||+||+++|.+|++.+- | -.||+.|..+|...
T Consensus 16 Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~------------------g-ITIV~SPLiALIkD 76 (641)
T KOG0352|consen 16 GHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG------------------G-ITIVISPLIALIKD 76 (641)
T ss_pred CchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC------------------C-eEEEehHHHHHHHH
Confidence 4432 378999999988775 8999999999999999999998753 2 48999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCc--EEEeCchHHHHHHH----cCCccCCCeeEEEEechhhhh
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPA--IVVGTPGRIAEISA----AGKLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--IlI~Tp~~l~~~l~----~~~~~~~~l~llIiDE~h~l~ 280 (560)
+.+.+..+-- +......-.+..+......+++...|. +++-||+....-.. +....-+-+.|+|+||||+..
T Consensus 77 QiDHL~~LKV--p~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 77 QIDHLKRLKV--PCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred HHHHHHhcCC--chhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh
Confidence 9999987621 111223344445566666677766554 79999998654211 112233458999999999988
Q ss_pred ccc--hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHH--HcCCCCeEEeeccccccCCCCC
Q 008602 281 SFN--FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAAR--SWGHDPLLVQAKNVIPLESMPA 356 (560)
Q Consensus 281 ~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 356 (560)
.|+ |++.+-.+-..-. . -++...+.++||-++.+.+-+- ..++.|+-+...+.++-.-++.
T Consensus 155 QWGHDFRPDYL~LG~LRS-~--------------~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD 219 (641)
T KOG0352|consen 155 QWGHDFRPDYLTLGSLRS-V--------------CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYD 219 (641)
T ss_pred hhccccCcchhhhhhHHh-h--------------CCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHH
Confidence 874 6776655432211 1 2567899999999988877654 3456666554333322111000
Q ss_pred CCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh---------cCCCeEEEEEcChhhHH
Q 008602 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA---------LDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~---------~~~~~~iif~~~~~~~~ 427 (560)
.. ++ ........+..+.....+-. .-.|-.||||.++.+++
T Consensus 220 ~~-----------------------------~K-~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cE 269 (641)
T KOG0352|consen 220 NH-----------------------------MK-SFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECE 269 (641)
T ss_pred HH-----------------------------HH-HHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHH
Confidence 00 00 00011111122222222211 11367899999999999
Q ss_pred HHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC
Q 008602 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 428 ~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~ 507 (560)
+++-.|...|+++..+|.++...+|..|.++|.++++.|++||..+++|+|-|+|++|||+++|.|++-|.|-.||+||.
T Consensus 270 q~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRD 349 (641)
T KOG0352|consen 270 QVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRD 349 (641)
T ss_pred HHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEecCccHHHHHHHHHH
Q 008602 508 GRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 508 g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
|.+.+|-++|+..|...+..+...
T Consensus 350 Gk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 350 GKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred CCccceeeeecccchHHHHHHHhh
Confidence 999999999999999888777654
No 82
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5e-33 Score=276.88 Aligned_cols=308 Identities=15% Similarity=0.188 Sum_probs=198.7
Q ss_pred HHHHHHhhhhcCCc--EEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 136 VQSAAIPSILKNHD--VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 136 ~Q~~ai~~i~~~~~--~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
+|.++++.+.++.+ +++++|||||||++|++|++... .++++++|+++|+.|+++.+++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~-------------------~~~~~~~P~~aL~~~~~~~~~~ 61 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE-------------------NDTIALYPTNALIEDQTEAIKE 61 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC-------------------CCEEEEeChHHHHHHHHHHHHH
Confidence 59999999999864 78899999999999999987532 2489999999999999999999
Q ss_pred HhCCCC---CceEEEEecCCChhH--------------------HHHHHHcCCCcEEEeCchHHHHHHHcCC--------
Q 008602 214 LLGPSD---KKAVQQLVGGANRSR--------------------QEEALRKNKPAIVVGTPGRIAEISAAGK-------- 262 (560)
Q Consensus 214 ~~~~~~---~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~IlI~Tp~~l~~~l~~~~-------- 262 (560)
++.... ...+..+. |..... ....+....|.|+++||+.|..++....
T Consensus 62 ~~~~~~~~~~~~v~~~~-g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~ 140 (357)
T TIGR03158 62 FVDVFKPERDVNLLHVS-KATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAA 140 (357)
T ss_pred HHHhcCCCCCceEEEec-CCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchh
Confidence 874321 22232233 331111 0112233568899999999987654321
Q ss_pred ccCCCeeEEEEechhhhhccch--H---HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc-
Q 008602 263 LHTHGCRFLVLDEIDELLSFNF--R---EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW- 336 (560)
Q Consensus 263 ~~~~~l~llIiDE~h~l~~~~~--~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~- 336 (560)
..+.++++|||||+|.+..... . .....++... ....+++++|||+++.+.......
T Consensus 141 ~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~~~~i~lSAT~~~~~~~~l~~~~ 203 (357)
T TIGR03158 141 GFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF-----------------ECRRKFVFLSATPDPALILRLQNAK 203 (357)
T ss_pred hhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhh-----------------hcCCcEEEEecCCCHHHHHHHHhcc
Confidence 1247899999999998543221 1 1222222222 123589999999998877777654
Q ss_pred -CCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHH-------HH
Q 008602 337 -GHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR-------CV 408 (560)
Q Consensus 337 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-------~~ 408 (560)
...+.....+........ .++.... .........+.+...+.. ....+...+.. .+
T Consensus 204 ~~~~~~~~v~g~~~~~~~~-----~~~~~~~----------~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~ 267 (357)
T TIGR03158 204 QAGVKIAPIDGEKYQFPDN-----PELEADN----------KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF 267 (357)
T ss_pred ccCceeeeecCcccccCCC-----hhhhccc----------cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH
Confidence 344444433321110000 0000000 000000000122222222 22222222222 22
Q ss_pred HhcCCCeEEEEEcChhhHHHHHHHHHHCC--CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEE
Q 008602 409 HALDAQTVIAFMNNTRQLKDAVFKLEARG--MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV 486 (560)
Q Consensus 409 ~~~~~~~~iif~~~~~~~~~~~~~L~~~~--~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI 486 (560)
....+++++|||+++..++.++..|++.+ +.+..+||.+++.+|.+. ++.+|||||+++++|||+|.+ +||
T Consensus 268 ~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 268 RQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred hccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE
Confidence 22356899999999999999999999864 578899999999988754 478999999999999999976 566
Q ss_pred EccCCCChhhhHhhhcccc
Q 008602 487 NLDLPTDSIHYAHRAGRTG 505 (560)
Q Consensus 487 ~~~~p~s~~~y~Qr~GR~g 505 (560)
++ |.+.+.|+||+||+|
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 45 899999999999997
No 83
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-33 Score=289.08 Aligned_cols=304 Identities=18% Similarity=0.248 Sum_probs=203.1
Q ss_pred EEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCC
Q 008602 151 VIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230 (560)
Q Consensus 151 li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~ 230 (560)
|+.|+||||||++|+..+...+ ..|.++||++|+++|+.|++++|++.++.. +..+.++.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l----------------~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~----v~vlhs~~ 60 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL----------------ALGKSVLVLVPEIALTPQMIQRFKYRFGSQ----VAVLHSGL 60 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH----------------HcCCeEEEEeCcHHHHHHHHHHHHHHhCCc----EEEEECCC
Confidence 5789999999999988887776 457789999999999999999999987532 44455544
Q ss_pred C---hhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccc---h---HHHHHHHHHHhccCCCC
Q 008602 231 N---RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN---F---REAMHRIVEHVGRRSGA 301 (560)
Q Consensus 231 ~---~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~---~---~~~l~~i~~~~~~~~~~ 301 (560)
. ....+..+.++.++|+|||+..+. ..++++++|||||+|...-.+ . ...+-....
T Consensus 61 ~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-------- 125 (505)
T TIGR00595 61 SDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-------- 125 (505)
T ss_pred CHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH--------
Confidence 3 344566777888899999998773 468899999999999743221 1 111111211
Q ss_pred CCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhccc
Q 008602 302 NPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQAD 381 (560)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (560)
...+.+++++||||+.+....+.... ...+.......-...+ .... .+
T Consensus 126 ----------~~~~~~vil~SATPsles~~~~~~g~--~~~~~l~~r~~~~~~p------------------~v~v--id 173 (505)
T TIGR00595 126 ----------KKFNCPVVLGSATPSLESYHNAKQKA--YRLLVLTRRVSGRKPP------------------EVKL--ID 173 (505)
T ss_pred ----------HhcCCCEEEEeCCCCHHHHHHHhcCC--eEEeechhhhcCCCCC------------------eEEE--Ee
Confidence 23577999999999877666554321 1111100000000000 0000 00
Q ss_pred ccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhh------------------------------------
Q 008602 382 QSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQ------------------------------------ 425 (560)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~------------------------------------ 425 (560)
+...... ..-.....+.+.+.+. .++++|||+|++..
T Consensus 174 --~~~~~~~---~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~C 246 (505)
T TIGR00595 174 --MRKEPRQ---SFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYC 246 (505)
T ss_pred --ccccccc---CCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCC
Confidence 0000000 0001122333333333 36789999776542
Q ss_pred ------------------------HHHHHHHHHHC--CCceeeccCCCCHHHH--HHHHHHhhcCCceEEEEecCcccCC
Q 008602 426 ------------------------LKDAVFKLEAR--GMKAAELHGDLGKLAR--STTLKKFKNGEVRVLVTNELSARGL 477 (560)
Q Consensus 426 ------------------------~~~~~~~L~~~--~~~~~~lhg~~~~~~r--~~v~~~F~~g~~~iLvaT~~~~~Gi 477 (560)
.+++.+.|.+. +.++..+|++++...+ +.++++|++|+.+|||+|+++++|+
T Consensus 247 g~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~ 326 (505)
T TIGR00595 247 GYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGH 326 (505)
T ss_pred cCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCC
Confidence 57778888876 6789999999987665 8999999999999999999999999
Q ss_pred CCCCCCEEEEccCCC------------ChhhhHhhhccccCCCCcceEEEEecCccHHHHHHH
Q 008602 478 DVAECDLVVNLDLPT------------DSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528 (560)
Q Consensus 478 dip~v~~VI~~~~p~------------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l 528 (560)
|+|++++|+.+|... ....|.|++||+||.+..|.+++.+...+...+..+
T Consensus 327 d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 327 HFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred CCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHH
Confidence 999999986544432 235689999999999999999988766665544443
No 84
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-32 Score=288.00 Aligned_cols=311 Identities=19% Similarity=0.264 Sum_probs=250.5
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+-+....+.+.++.++..++|+|+||||||++.-..+++.- ...+..+.++.|+|.-|..+++++
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g---------------~~~~g~I~~tQPRRlAArsvA~Rv 114 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEG---------------LGIAGKIGCTQPRRLAARSVAERV 114 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhh---------------cccCCeEEecCchHHHHHHHHHHH
Confidence 56788888999999999999999999999998766666654 134567999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh-hhhccchHHHH-H
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID-ELLSFNFREAM-H 289 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h-~l~~~~~~~~l-~ 289 (560)
.+.++...+..|++-+...+.... ...|-++|.|.|.+.++.+.. ++.+++|||||+| |.++.++.-.+ +
T Consensus 115 Aeel~~~~G~~VGY~iRfe~~~s~-------~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk 186 (845)
T COG1643 115 AEELGEKLGETVGYSIRFESKVSP-------RTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLK 186 (845)
T ss_pred HHHhCCCcCceeeEEEEeeccCCC-------CceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHH
Confidence 999998878778887766554432 335999999999998887555 8889999999999 66666654444 4
Q ss_pred HHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCC
Q 008602 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGS 369 (560)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (560)
.++... +++.++|.||||+ +...|+..|...|++...++.+|+...+.....
T Consensus 187 ~~~~~r-----------------r~DLKiIimSATl--d~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~--------- 238 (845)
T COG1643 187 DLLARR-----------------RDDLKLIIMSATL--DAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAE--------- 238 (845)
T ss_pred HHHhhc-----------------CCCceEEEEeccc--CHHHHHHHcCCCCEEEecCCccceEEEecCCCC---------
Confidence 444443 3578999999999 889999999999999999999887643322111
Q ss_pred CCCcchhhhcccccCCcccceEEEEechhh-HHHHHHHHH---HhcCCCeEEEEEcChhhHHHHHHHHHH----CCCcee
Q 008602 370 SSNSNLQAKQADQSLPPALKHYYCVTKLQH-KVDTLRRCV---HALDAQTVIAFMNNTRQLKDAVFKLEA----RGMKAA 441 (560)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~~---~~~~~~~~iif~~~~~~~~~~~~~L~~----~~~~~~ 441 (560)
... ..+.+...+ .....|.+|||.++..+++++++.|.+ ....+.
T Consensus 239 ---------------------------~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~ 291 (845)
T COG1643 239 ---------------------------ADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEIL 291 (845)
T ss_pred ---------------------------cchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEe
Confidence 001 223333333 334679999999999999999999998 357899
Q ss_pred eccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC------------------CCChhhhHhhhcc
Q 008602 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL------------------PTDSIHYAHRAGR 503 (560)
Q Consensus 442 ~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~------------------p~s~~~y~Qr~GR 503 (560)
++||.|+.+++.++++.-..|+.+|++||+|++++|.||++.+||.-+. |-|-++..||.||
T Consensus 292 PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGR 371 (845)
T COG1643 292 PLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGR 371 (845)
T ss_pred eccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccc
Confidence 9999999999999999888888899999999999999999999995444 2356889999999
Q ss_pred ccCCCCcceEEEEecCcc
Q 008602 504 TGRLGRRGTVVSICEEPE 521 (560)
Q Consensus 504 ~gR~g~~g~~~~l~~~~e 521 (560)
|||. .+|.||-+|+.++
T Consensus 372 AGR~-~pGicyRLyse~~ 388 (845)
T COG1643 372 AGRT-GPGICYRLYSEED 388 (845)
T ss_pred cccC-CCceEEEecCHHH
Confidence 9999 5799999998754
No 85
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=251.49 Aligned_cols=346 Identities=18% Similarity=0.252 Sum_probs=252.7
Q ss_pred ccCCCCHHHHHHHH-hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCC
Q 008602 113 LELGLPPLLLERLE-REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD 191 (560)
Q Consensus 113 ~~~~l~~~l~~~l~-~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
++|+.+.+..+.|. .+.....+|.|..+|++.+.+.++++..|||.||+++|.+|++..-
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad------------------- 134 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD------------------- 134 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC-------------------
Confidence 46777888777775 4466678999999999999999999999999999999999998753
Q ss_pred eeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHH----HHH--cCCCcEEEeCchHHHHH---HH--c
Q 008602 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEE----ALR--KNKPAIVVGTPGRIAEI---SA--A 260 (560)
Q Consensus 192 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~--~~~~~IlI~Tp~~l~~~---l~--~ 260 (560)
..+||++|...|.+.+.-.++.+- +. ...+ ......+... .+. .....+++.||+.+... +. .
T Consensus 135 g~alvi~plislmedqil~lkqlg----i~-as~l-nansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle 208 (695)
T KOG0353|consen 135 GFALVICPLISLMEDQILQLKQLG----ID-ASML-NANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE 208 (695)
T ss_pred CceEeechhHHHHHHHHHHHHHhC----cc-hhhc-cCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH
Confidence 348999999999998888887752 11 1111 1111122222 222 23456899999999762 11 1
Q ss_pred CCccCCCeeEEEEechhhhhccc--hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCC
Q 008602 261 GKLHTHGCRFLVLDEIDELLSFN--FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH 338 (560)
Q Consensus 261 ~~~~~~~l~llIiDE~h~l~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~ 338 (560)
..+....+.+|.|||+|+...|+ |+..++.+ ..+.+.. ++..+++++||.+..+..-++..+.
T Consensus 209 ka~~~~~~~~iaidevhccsqwghdfr~dy~~l-~ilkrqf--------------~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 209 KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKAL-GILKRQF--------------KGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred HHhhcceeEEEeecceeehhhhCcccCcchHHH-HHHHHhC--------------CCCceeeeehhhhcchhhHHHHHHh
Confidence 22345668999999999888774 56555432 1122111 5678999999998887776665322
Q ss_pred CCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhH---HHHHHHHHHh-cCCC
Q 008602 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK---VDTLRRCVHA-LDAQ 414 (560)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~~~~~-~~~~ 414 (560)
-...... ...+......|....+.... ++.+..++.. ..++
T Consensus 274 ie~~~tf-----------------------------------~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gq 318 (695)
T KOG0353|consen 274 IEAAFTF-----------------------------------RAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQ 318 (695)
T ss_pred HHhhhee-----------------------------------ecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCC
Confidence 1100000 00111112223333333322 3333344433 5678
Q ss_pred eEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCCh
Q 008602 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDS 494 (560)
Q Consensus 415 ~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~ 494 (560)
..||||-+..+++.++..|+..|+.+..+|..|.+.++..+-+.|..|+++|+|||-.+++|||-|+|++|||.++|+|+
T Consensus 319 sgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksi 398 (695)
T KOG0353|consen 319 SGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSI 398 (695)
T ss_pred cceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHh-------------------------------------------hhccccCCCCcceEEEEecCccHHHHHHHHHH
Q 008602 495 IHYAH-------------------------------------------RAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 495 ~~y~Q-------------------------------------------r~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
+.|.| ..||+||.+.++.|+++|.-.|.+....+...
T Consensus 399 enyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~ 478 (695)
T KOG0353|consen 399 ENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQM 478 (695)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHH
Confidence 99999 55999999999999999988888777666554
Q ss_pred hC
Q 008602 532 LA 533 (560)
Q Consensus 532 l~ 533 (560)
-+
T Consensus 479 e~ 480 (695)
T KOG0353|consen 479 EN 480 (695)
T ss_pred Hh
Confidence 33
No 86
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=287.48 Aligned_cols=395 Identities=15% Similarity=0.189 Sum_probs=283.5
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeE
Q 008602 115 LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194 (560)
Q Consensus 115 ~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 194 (560)
...++...+.+..+.-.+.+..+...++++.+++.++|+|+||+|||++.-..+++..... +....+
T Consensus 156 ~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~-------------~~~~~I 222 (924)
T KOG0920|consen 156 PKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES-------------GAACNI 222 (924)
T ss_pred hhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc-------------CCCCeE
Confidence 3444555555555555578999999999999999999999999999999999999876321 245669
Q ss_pred EEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEe
Q 008602 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLD 274 (560)
Q Consensus 195 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiD 274 (560)
+|..|+|..|..+++++....+...+..|++-++..+.... ...+++||.|.|++.++. .-.+..+..||+|
T Consensus 223 icTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~-------~t~L~fcTtGvLLr~L~~-~~~l~~vthiivD 294 (924)
T KOG0920|consen 223 ICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSR-------ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVD 294 (924)
T ss_pred EecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccCC-------ceeEEEecHHHHHHHhcc-CcccccCceeeee
Confidence 99999999999999999998877777778776665443322 134999999999998887 5557889999999
Q ss_pred chh-hhhccchHHHH-HHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccC
Q 008602 275 EID-ELLSFNFREAM-HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLE 352 (560)
Q Consensus 275 E~h-~l~~~~~~~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (560)
|+| |-.+.+|.-.+ +.++.+ +++.++++||||+ +...|...|...|.+...++++|+.
T Consensus 295 EVHER~i~~DflLi~lk~lL~~------------------~p~LkvILMSAT~--dae~fs~YF~~~pvi~i~grtfpV~ 354 (924)
T KOG0920|consen 295 EVHERSINTDFLLILLKDLLPR------------------NPDLKVILMSATL--DAELFSDYFGGCPVITIPGRTFPVK 354 (924)
T ss_pred eEEEccCCcccHHHHHHHHhhh------------------CCCceEEEeeeec--chHHHHHHhCCCceEeecCCCcchH
Confidence 999 55566665555 444332 4889999999999 6899999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHH-hcCCCeEEEEEcChhhHHHHHH
Q 008602 353 SMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVH-ALDAQTVIAFMNNTRQLKDAVF 431 (560)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~-~~~~~~~iif~~~~~~~~~~~~ 431 (560)
.+.+.+............... ...... ......+..+... -....+..+...+. ....|.+|||.++..++..+..
T Consensus 355 ~~fLEDil~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~ 431 (924)
T KOG0920|consen 355 EYFLEDILSKTGYVSEDDSAR-SGPERS-QLRLARLKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKE 431 (924)
T ss_pred HHHHHHHHHHhcccccccccc-cccccC-ccccccchhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHH
Confidence 665443333222111111111 000000 0000001111111 11122222222222 3457999999999999999999
Q ss_pred HHHHC-------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEE--------ccCCC----
Q 008602 432 KLEAR-------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN--------LDLPT---- 492 (560)
Q Consensus 432 ~L~~~-------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~--------~~~p~---- 492 (560)
.|... .+-+.++|+.|+..++..+++....|..+|+++|++++++|.|++|.+||. ||+-.
T Consensus 432 ~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~ 511 (924)
T KOG0920|consen 432 LLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSC 511 (924)
T ss_pred HhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcch
Confidence 99752 256789999999999999999999999999999999999999999999994 55543
Q ss_pred ------ChhhhHhhhccccCCCCcceEEEEecCccHHHH---HHHHHHhCCCccccccCCCceeecccchh
Q 008602 493 ------DSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVV---KKMQKQLAVPIQACEFTEGRLVIGKEEEK 554 (560)
Q Consensus 493 ------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 554 (560)
|.+.-.||+|||||. +.|.||.+|+......+ ..+-+.+..+.+..+|-..-+..+.-.+.
T Consensus 512 l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~f 581 (924)
T KOG0920|consen 512 LLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAF 581 (924)
T ss_pred hheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHH
Confidence 446789999999999 78999999986643322 33456667777777776554444433333
No 87
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.4e-31 Score=286.40 Aligned_cols=358 Identities=16% Similarity=0.165 Sum_probs=221.3
Q ss_pred CChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR 209 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~ 209 (560)
.|.|+|..++..++.. ..+|+..++|.|||+.+.+.+...+.. +...++||+||+ .|..||..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~--------------g~~~rvLIVvP~-sL~~QW~~ 216 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT--------------GRAERVLILVPE-TLQHQWLV 216 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc--------------CCCCcEEEEcCH-HHHHHHHH
Confidence 6999999999887654 478999999999999987777665522 233569999998 88999999
Q ss_pred HHHHHhCCCCCceEEEEecCCChhHHH----HHHHcCCCcEEEeCchHHHHHH-HcCCccCCCeeEEEEechhhhhcc--
Q 008602 210 EIKKLLGPSDKKAVQQLVGGANRSRQE----EALRKNKPAIVVGTPGRIAEIS-AAGKLHTHGCRFLVLDEIDELLSF-- 282 (560)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~IlI~Tp~~l~~~l-~~~~~~~~~l~llIiDE~h~l~~~-- 282 (560)
++.++|+.. .. ++++....... ..+ ...+++|+|++.+...- ....+.-..+++|||||||++-..
T Consensus 217 El~~kF~l~----~~-i~~~~~~~~~~~~~~~pf--~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~ 289 (956)
T PRK04914 217 EMLRRFNLR----FS-LFDEERYAEAQHDADNPF--ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEE 289 (956)
T ss_pred HHHHHhCCC----eE-EEcCcchhhhcccccCcc--ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCC
Confidence 998887532 22 22222111100 001 12469999999886511 111122246799999999997521
Q ss_pred --c-hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh-HHH-HHHHHcCCCCeEEeeccccc-------
Q 008602 283 --N-FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF-SVI-RAARSWGHDPLLVQAKNVIP------- 350 (560)
Q Consensus 283 --~-~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~-~~~-~~~~~~~~~~~~~~~~~~~~------- 350 (560)
+ ....+..+.. ....++++||||.. ... .+...-+-+|........+.
T Consensus 290 ~~s~~y~~v~~La~--------------------~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~ 349 (956)
T PRK04914 290 APSREYQVVEQLAE--------------------VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYR 349 (956)
T ss_pred CcCHHHHHHHHHhh--------------------ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhH
Confidence 1 1222233321 12368999999962 111 11111111221111000000
Q ss_pred ----------------------cCCCCC-CCCCCCCCC----C-----------------CCCCCCcchhhhcccccCCc
Q 008602 351 ----------------------LESMPA-TGPGNLSGP----M-----------------SGSSSNSNLQAKQADQSLPP 386 (560)
Q Consensus 351 ----------------------~~~~~~-~~~~~~~~~----~-----------------~~~~~~~~~~~~~~~~~~~~ 386 (560)
+..+.. .....+... . .+....-..+.......++.
T Consensus 350 ~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~ 429 (956)
T PRK04914 350 PVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPK 429 (956)
T ss_pred HHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCc
Confidence 000000 000000000 0 00000000000000000000
Q ss_pred ccceEE-------------------------------------EEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 008602 387 ALKHYY-------------------------------------CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429 (560)
Q Consensus 387 ~~~~~~-------------------------------------~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~ 429 (560)
...+.+ .......|++.|.+++....+.++||||++...+..+
T Consensus 430 R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L 509 (956)
T PRK04914 430 RELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQL 509 (956)
T ss_pred CceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHH
Confidence 000000 0112335677788888877789999999999999999
Q ss_pred HHHHH-HCCCceeeccCCCCHHHHHHHHHHhhcC--CceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccC
Q 008602 430 VFKLE-ARGMKAAELHGDLGKLARSTTLKKFKNG--EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGR 506 (560)
Q Consensus 430 ~~~L~-~~~~~~~~lhg~~~~~~r~~v~~~F~~g--~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR 506 (560)
...|. ..|+++..+||+|++.+|.++++.|+++ ..+|||||+++++|+|++.+++||+||+|+|+..|.||+||+||
T Consensus 510 ~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~R 589 (956)
T PRK04914 510 EQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDR 589 (956)
T ss_pred HHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhccccc
Confidence 99995 5699999999999999999999999974 69999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEecCccHHHHHHHHHH
Q 008602 507 LGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 507 ~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
.|+++.+.+++...+....+.+.+-
T Consensus 590 iGQ~~~V~i~~~~~~~t~~e~i~~~ 614 (956)
T PRK04914 590 IGQKHDIQIHVPYLEGTAQERLFRW 614 (956)
T ss_pred CCCCceEEEEEccCCCCHHHHHHHH
Confidence 9999987666544433333344433
No 88
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-31 Score=273.80 Aligned_cols=323 Identities=16% Similarity=0.199 Sum_probs=211.1
Q ss_pred CChHHHHHHHhhhhc----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSILK----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.++++|.+|+.++.. ++..++++|||+|||.+++..+.... ..+||||||++|+.||
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-------------------~~~Lvlv~~~~L~~Qw 96 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-------------------RSTLVLVPTKELLDQW 96 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-------------------CCEEEEECcHHHHHHH
Confidence 799999999999999 89999999999999999887776643 2299999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~ 287 (560)
++.+...+... ..++.+.++..... . ..|.|+|.+.+........+..+.+++||+|||||+....+...
T Consensus 97 ~~~~~~~~~~~--~~~g~~~~~~~~~~------~--~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~ 166 (442)
T COG1061 97 AEALKKFLLLN--DEIGIYGGGEKELE------P--AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRI 166 (442)
T ss_pred HHHHHHhcCCc--cccceecCceeccC------C--CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHH
Confidence 98887775543 11233333221111 0 25999999999774211223334689999999999766555544
Q ss_pred HHHHHHHhccCCCCCCCCchhhhhhccCce-EEEEEeeCChHHHHHHHH--cCCCCeEEeeccccccCCCCCCCCCCCCC
Q 008602 288 MHRIVEHVGRRSGANPREPKSALAMRAERQ-TIMVSATVPFSVIRAARS--WGHDPLLVQAKNVIPLESMPATGPGNLSG 364 (560)
Q Consensus 288 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (560)
...+. ... ++++||||.......... ....|..+.......+.........-..
T Consensus 167 ~~~~~----------------------~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~- 223 (442)
T COG1061 167 LELLS----------------------AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVE- 223 (442)
T ss_pred HHhhh----------------------cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEE-
Confidence 44442 223 899999986322111111 1111233222111110000000000000
Q ss_pred CCCCCCCCcchhhhcccccCC----------cccceEEEEechhhHHHHHHHHHHhc-CCCeEEEEEcChhhHHHHHHHH
Q 008602 365 PMSGSSSNSNLQAKQADQSLP----------PALKHYYCVTKLQHKVDTLRRCVHAL-DAQTVIAFMNNTRQLKDAVFKL 433 (560)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~iif~~~~~~~~~~~~~L 433 (560)
..................... ..............+...+..++... .+.+++||+.+..++..++..+
T Consensus 224 i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~ 303 (442)
T COG1061 224 IKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLF 303 (442)
T ss_pred EEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHh
Confidence 000000000000000000000 00000111222334555555666544 5789999999999999999999
Q ss_pred HHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC
Q 008602 434 EARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 434 ~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~ 507 (560)
...+. +..+.|..+..+|..+++.|+.|++++||++.++.+|+|+|+++++|...+..|...|+||+||..|.
T Consensus 304 ~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 304 LAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 98877 88999999999999999999999999999999999999999999999999999999999999999993
No 89
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=259.96 Aligned_cols=314 Identities=17% Similarity=0.236 Sum_probs=240.6
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+-+.+-.+.+..+.+++.++|.|+||||||++.-..+.++-.. ..|. +.|..|+|.-|..++.++
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~--------------~~g~-I~~TQPRRVAavslA~RV 115 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA--------------SSGK-IACTQPRRVAAVSLAKRV 115 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc--------------cCCc-EEeecCchHHHHHHHHHH
Confidence 5577778889999999999999999999999866666554311 2233 999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh-hhhccc-hHHHHH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID-ELLSFN-FREAMH 289 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h-~l~~~~-~~~~l~ 289 (560)
.+..+...+..|++.+.=.+... ....|.++|.|.|++....+. .++.+++||+|||| |-+..+ ....++
T Consensus 116 AeE~~~~lG~~VGY~IRFed~ts-------~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLK 187 (674)
T KOG0922|consen 116 AEEMGCQLGEEVGYTIRFEDSTS-------KDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLK 187 (674)
T ss_pred HHHhCCCcCceeeeEEEecccCC-------CceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHH
Confidence 99887766666776554333322 234599999999998554433 47789999999999 433322 233334
Q ss_pred HHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCC
Q 008602 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGS 369 (560)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (560)
+++.. +++.+++.+|||+ +...|...|...|++...++.+|++.++...+.
T Consensus 188 ki~~~------------------R~~LklIimSATl--da~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~--------- 238 (674)
T KOG0922|consen 188 KILKK------------------RPDLKLIIMSATL--DAEKFSEYFNNAPILTIPGRTFPVEILYLKEPT--------- 238 (674)
T ss_pred HHHhc------------------CCCceEEEEeeee--cHHHHHHHhcCCceEeecCCCCceeEEeccCCc---------
Confidence 44333 4788999999999 899999999999999999998887543322110
Q ss_pred CCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHC------C--Ccee
Q 008602 370 SSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR------G--MKAA 441 (560)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~------~--~~~~ 441 (560)
..| ...-+..+.++....+.|.+|||..+.++++.+++.|.+. + ..+.
T Consensus 239 -------------------~dY-----v~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~l 294 (674)
T KOG0922|consen 239 -------------------ADY-----VDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELIL 294 (674)
T ss_pred -------------------hhh-----HHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceee
Confidence 000 1122233444444567789999999999999999999875 1 1357
Q ss_pred eccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC------------------CCChhhhHhhhcc
Q 008602 442 ELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL------------------PTDSIHYAHRAGR 503 (560)
Q Consensus 442 ~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~------------------p~s~~~y~Qr~GR 503 (560)
++||.|+.+++.+++..-..|.++|+++|+++++.+.||++.+||+-+. |-|-++-.||.||
T Consensus 295 ply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGR 374 (674)
T KOG0922|consen 295 PLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGR 374 (674)
T ss_pred eecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhccc
Confidence 8999999999999999988999999999999999999999999995433 3477889999999
Q ss_pred ccCCCCcceEEEEecCccH
Q 008602 504 TGRLGRRGTVVSICEEPEV 522 (560)
Q Consensus 504 ~gR~g~~g~~~~l~~~~e~ 522 (560)
|||. .+|+||-+|++++.
T Consensus 375 AGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 375 AGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred CCCC-CCceEEEeeeHHHH
Confidence 9999 46999999987764
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=269.40 Aligned_cols=349 Identities=21% Similarity=0.262 Sum_probs=247.0
Q ss_pred HHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 123 ERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 123 ~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
+....++| ++..+|++||-++..|..++|.|+|.+|||.+|-.++.... ..+.++++.+|-++
T Consensus 289 e~a~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq----------------~h~TR~iYTSPIKA 351 (1248)
T KOG0947|consen 289 EMALIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ----------------KHMTRTIYTSPIKA 351 (1248)
T ss_pred hHHhhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH----------------hhccceEecchhhh
Confidence 34556788 89999999999999999999999999999999988887665 56788999999999
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhcc
Q 008602 203 LGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282 (560)
Q Consensus 203 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~ 282 (560)
|.+|-++.|+.-|++. +.++|+..... ...++|+|.+.|.+++.++.--.+++.+||+||+|.+.+.
T Consensus 352 LSNQKfRDFk~tF~Dv-----gLlTGDvqinP--------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~ 418 (1248)
T KOG0947|consen 352 LSNQKFRDFKETFGDV-----GLLTGDVQINP--------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDV 418 (1248)
T ss_pred hccchHHHHHHhcccc-----ceeecceeeCC--------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccc
Confidence 9999999999988764 35566544432 3459999999999999999888899999999999999999
Q ss_pred chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCC----CCeEEee-ccccccCCCCCC
Q 008602 283 NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGH----DPLLVQA-KNVIPLESMPAT 357 (560)
Q Consensus 283 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~ 357 (560)
..+..+++++-+++ ..+++|++|||++ +..+|+.+.++ .-.++.+ .+.+|+..+...
T Consensus 419 eRGvVWEEViIMlP-----------------~HV~~IlLSATVP-N~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t 480 (1248)
T KOG0947|consen 419 ERGVVWEEVIIMLP-----------------RHVNFILLSATVP-NTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYT 480 (1248)
T ss_pred cccccceeeeeecc-----------------ccceEEEEeccCC-ChHHHHHHhhhccCceEEEEecCCCccceEEEEEe
Confidence 99999988887775 6789999999997 56677776543 2223333 444554433222
Q ss_pred CCCCCC-----C--CCCCCCCCcch-----hh----hccc----ccCCcccceEE--------EEechhh---HHHHHHH
Q 008602 358 GPGNLS-----G--PMSGSSSNSNL-----QA----KQAD----QSLPPALKHYY--------CVTKLQH---KVDTLRR 406 (560)
Q Consensus 358 ~~~~~~-----~--~~~~~~~~~~~-----~~----~~~~----~~~~~~~~~~~--------~~~~~~~---k~~~l~~ 406 (560)
....+. . ...+....... +. .... .....+-+..+ ....... ....+..
T Consensus 481 ~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin 560 (1248)
T KOG0947|consen 481 KKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLIN 560 (1248)
T ss_pred ccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHH
Confidence 111000 0 00000000000 00 0000 00000000000 0001111 1222233
Q ss_pred HHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCc---------------------------------------eeeccCCC
Q 008602 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK---------------------------------------AAELHGDL 447 (560)
Q Consensus 407 ~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~---------------------------------------~~~lhg~~ 447 (560)
.++..+--++++||-+++.|++.++.|...++. ++++||++
T Consensus 561 ~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~Gl 640 (1248)
T KOG0947|consen 561 HLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGL 640 (1248)
T ss_pred HHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccc
Confidence 333344579999999999999999998654321 67889999
Q ss_pred CHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCC---------CChhhhHhhhccccCCCC--cceEEEE
Q 008602 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP---------TDSIHYAHRAGRTGRLGR--RGTVVSI 516 (560)
Q Consensus 448 ~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p---------~s~~~y~Qr~GR~gR~g~--~g~~~~l 516 (560)
-+--++-|...|..|-++||+||.++++|+|.|.-.+|+ -+.. ..+.+|.|++|||||.|- .|+++++
T Consensus 641 LPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~ 719 (1248)
T KOG0947|consen 641 LPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIM 719 (1248)
T ss_pred hHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEE
Confidence 999999999999999999999999999999999655555 3322 367899999999999874 6888888
Q ss_pred ecCc
Q 008602 517 CEEP 520 (560)
Q Consensus 517 ~~~~ 520 (560)
+...
T Consensus 720 ~~~~ 723 (1248)
T KOG0947|consen 720 CKDS 723 (1248)
T ss_pred ecCC
Confidence 8654
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=272.48 Aligned_cols=345 Identities=21% Similarity=0.298 Sum_probs=244.7
Q ss_pred CCCCChHHHHHHHhhhhcC-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
|...+.++|....++.+.+ .++++|||||+|||.++++.+++.+....+.. +.-.....++++++|..+|++.|
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d-----gs~nl~~fKIVYIAPmKaLvqE~ 380 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED-----GSVNLAPFKIVYIAPMKALVQEM 380 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc-----cceecccceEEEEeeHHHHHHHH
Confidence 5556899999999988875 78999999999999999999999996654422 11224457899999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC--ccCCCeeEEEEechhhhhccchH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK--LHTHGCRFLVLDEIDELLSFNFR 285 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~--~~~~~l~llIiDE~h~l~~~~~~ 285 (560)
...|.+++.+.++. |.-.+|......+... ..+|+||||+.+.-+-+... ...+-++++||||.| |+..+.+
T Consensus 381 VgsfSkRla~~GI~-V~ElTgD~~l~~~qie----eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH-LLhDdRG 454 (1674)
T KOG0951|consen 381 VGSFSKRLAPLGIT-VLELTGDSQLGKEQIE----ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH-LLHDDRG 454 (1674)
T ss_pred HHHHHhhccccCcE-EEEecccccchhhhhh----cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh-hcccccc
Confidence 99999999988765 5556665443332211 24699999999855443321 122347899999999 4777899
Q ss_pred HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCC-eE-EeeccccccCCCCCCCCCCCC
Q 008602 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP-LL-VQAKNVIPLESMPATGPGNLS 363 (560)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 363 (560)
+.++.|..+..++..... ..++++++|||+|+-. ....+...++ -+ .......|.
T Consensus 455 pvLESIVaRt~r~ses~~----------e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRpv------------ 511 (1674)
T KOG0951|consen 455 PVLESIVARTFRRSESTE----------EGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRPV------------ 511 (1674)
T ss_pred hHHHHHHHHHHHHhhhcc----------cCceeeeecccCCchh-hhHHHhccCcccccccCcccCcC------------
Confidence 999988888765443332 5789999999997432 2222222222 11 111111111
Q ss_pred CCCCCCCCCcchhhhcccccCCcccceEEEEech--h-hHH-----HHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHH
Q 008602 364 GPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKL--Q-HKV-----DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEA 435 (560)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~k~-----~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~ 435 (560)
.+.+-++-... . .+. ....++++....+++|||+.++++..+.++.++.
T Consensus 512 -----------------------PL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd 568 (1674)
T KOG0951|consen 512 -----------------------PLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRD 568 (1674)
T ss_pred -----------------------CccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHH
Confidence 11111111111 1 111 1233455556679999999999998888877762
Q ss_pred C-------------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCC
Q 008602 436 R-------------------------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLD 478 (560)
Q Consensus 436 ~-------------------------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gid 478 (560)
. .+.++++|+||+..+|..+.+.|+.|+++|||+|..+++|++
T Consensus 569 ~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvn 648 (1674)
T KOG0951|consen 569 KALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVN 648 (1674)
T ss_pred HHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcC
Confidence 0 244789999999999999999999999999999999999999
Q ss_pred CCCCCEEE----EccCC------CChhhhHhhhccccCCC--CcceEEEEecCccHHHHHHHHH
Q 008602 479 VAECDLVV----NLDLP------TDSIHYAHRAGRTGRLG--RRGTVVSICEEPEVFVVKKMQK 530 (560)
Q Consensus 479 ip~v~~VI----~~~~p------~s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~e~~~~~~l~~ 530 (560)
+|.-.++| .||+. .++.+..||.||+||.+ +.|..+++....+..+...+++
T Consensus 649 lpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn 712 (1674)
T KOG0951|consen 649 LPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMN 712 (1674)
T ss_pred CCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhh
Confidence 99877777 46653 47899999999999975 4577888887777666655444
No 92
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=4.8e-29 Score=268.14 Aligned_cols=329 Identities=18% Similarity=0.231 Sum_probs=204.7
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.|+|.|..+........-++|.+|||+|||++++.++...+.. ....+++|..||+++++|+++++
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~--------------~~~~gi~~aLPT~Atan~m~~Rl 351 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--------------GLADSIIFALPTQATANAMLSRL 351 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------------CCCCeEEEECcHHHHHHHHHHHH
Confidence 8999999886554445678999999999999998887765411 22457999999999999999998
Q ss_pred HHHhCCC-CCceEEEEecCCChhHH---------------------HHHHHcC-----CCcEEEeCchHHHH-HHHcCCc
Q 008602 212 KKLLGPS-DKKAVQQLVGGANRSRQ---------------------EEALRKN-----KPAIVVGTPGRIAE-ISAAGKL 263 (560)
Q Consensus 212 ~~~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~l~~~-----~~~IlI~Tp~~l~~-~l~~~~~ 263 (560)
.+++... ....+....|....... ...+..+ -.+|+|||...++. .+.....
T Consensus 352 ~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~ 431 (878)
T PRK09694 352 EALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHR 431 (878)
T ss_pred HHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchH
Confidence 8643211 11224444443321110 0111111 14699999988774 3332222
Q ss_pred cCCCe----eEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHH-HcCC
Q 008602 264 HTHGC----RFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAAR-SWGH 338 (560)
Q Consensus 264 ~~~~l----~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~-~~~~ 338 (560)
.++.+ ++|||||+|. ++......+..+++.+.. ....+|+||||++....+... .+..
T Consensus 432 ~lR~~~La~svvIiDEVHA-yD~ym~~lL~~~L~~l~~----------------~g~~vIllSATLP~~~r~~L~~a~~~ 494 (878)
T PRK09694 432 FIRGFGLGRSVLIVDEVHA-YDAYMYGLLEAVLKAQAQ----------------AGGSVILLSATLPATLKQKLLDTYGG 494 (878)
T ss_pred HHHHHhhccCeEEEechhh-CCHHHHHHHHHHHHHHHh----------------cCCcEEEEeCCCCHHHHHHHHHHhcc
Confidence 22222 4899999996 666555666777766532 355799999999987765433 3321
Q ss_pred CCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEE-----echhhHHHHHHHHHHh-cC
Q 008602 339 DPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCV-----TKLQHKVDTLRRCVHA-LD 412 (560)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~k~~~l~~~~~~-~~ 412 (560)
... .......|+-... ... .............. .....+.+ .........+..++.. ..
T Consensus 495 ~~~-~~~~~~YPlvt~~--~~~----------~~~~~~~~~~~~~~--~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~ 559 (878)
T PRK09694 495 HDP-VELSSAYPLITWR--GVN----------GAQRFDLSAHPEQL--PARFTIQLEPICLADMLPDLTLLQRMIAAANA 559 (878)
T ss_pred ccc-ccccccccccccc--ccc----------cceeeecccccccc--CcceEEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 100 0000001110000 000 00000000000000 00111111 1001112223333332 35
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHCC---CceeeccCCCCHHHH----HHHHHHh-hcCC---ceEEEEecCcccCCCCCC
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEARG---MKAAELHGDLGKLAR----STTLKKF-KNGE---VRVLVTNELSARGLDVAE 481 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~~---~~~~~lhg~~~~~~r----~~v~~~F-~~g~---~~iLvaT~~~~~Gidip~ 481 (560)
+++++||||+++.+.++++.|++.+ ..+..+||.++..+| .++++.| ++|+ ..|||||++++.|+|| +
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d 638 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-D 638 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-C
Confidence 7899999999999999999999764 679999999999999 4678888 6666 4799999999999999 6
Q ss_pred CCEEEEccCCCChhhhHhhhccccCCCC
Q 008602 482 CDLVVNLDLPTDSIHYAHRAGRTGRLGR 509 (560)
Q Consensus 482 v~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 509 (560)
++++|....| .+.++||+||+||.+.
T Consensus 639 ~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 639 FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 8999988777 6799999999999875
No 93
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.4e-31 Score=264.33 Aligned_cols=354 Identities=20% Similarity=0.224 Sum_probs=245.8
Q ss_pred HHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
-+.++| ++.|+|..||..+-++..+||.|.|.+|||.++-.+|...+ ....+||+.+|-++|.
T Consensus 123 Ak~YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL----------------r~kQRVIYTSPIKALS 185 (1041)
T KOG0948|consen 123 AKTYPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL----------------REKQRVIYTSPIKALS 185 (1041)
T ss_pred ccCCCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH----------------HhcCeEEeeChhhhhc
Confidence 345577 89999999999999999999999999999999999999988 5667899999999999
Q ss_pred HHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccch
Q 008602 205 MQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284 (560)
Q Consensus 205 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~ 284 (560)
+|-|+++...|++ |+..+|+..... .+..+|+|.+.|..++.++.-.++.+.+||+||+|.|-|...
T Consensus 186 NQKYREl~~EF~D-----VGLMTGDVTInP--------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkER 252 (1041)
T KOG0948|consen 186 NQKYRELLEEFKD-----VGLMTGDVTINP--------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKER 252 (1041)
T ss_pred chhHHHHHHHhcc-----cceeecceeeCC--------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhcccccc
Confidence 9999999999876 455555543322 234899999999999999988899999999999999998877
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcC---CCCeEE--eeccccccCCCCCC-C
Q 008602 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG---HDPLLV--QAKNVIPLESMPAT-G 358 (560)
Q Consensus 285 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~-~ 358 (560)
+-.+++-+-.+ +...+.+++|||+| +..+|+.+.. .-|.-+ ...+..|+..+... +
T Consensus 253 GVVWEETIIll-----------------P~~vr~VFLSATiP-NA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~g 314 (1041)
T KOG0948|consen 253 GVVWEETIILL-----------------PDNVRFVFLSATIP-NARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAG 314 (1041)
T ss_pred ceeeeeeEEec-----------------cccceEEEEeccCC-CHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCC
Confidence 76665443333 36789999999997 5667776632 223222 22333344333111 1
Q ss_pred CCCCCC--CCCCCCCCcchhhhcccccCCc------------ccceEEE--EechhhHHHHHHHHHHhcCCCeEEEEEcC
Q 008602 359 PGNLSG--PMSGSSSNSNLQAKQADQSLPP------------ALKHYYC--VTKLQHKVDTLRRCVHALDAQTVIAFMNN 422 (560)
Q Consensus 359 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~~~~k~~~l~~~~~~~~~~~~iif~~~ 422 (560)
...+.. +..+.....+-+.. ...+.. ..+..-. .......+..+...+-..+..++|||+-+
T Consensus 315 gdGlylvVDek~~FrednF~~a--m~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFS 392 (1041)
T KOG0948|consen 315 GDGLYLVVDEKGKFREDNFQKA--MSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFS 392 (1041)
T ss_pred CCeeEEEEecccccchHHHHHH--HHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEec
Confidence 111000 01100110100000 000000 0000000 01111122233344444567899999999
Q ss_pred hhhHHHHHHHHHHCCCc---------------------------------------eeeccCCCCHHHHHHHHHHhhcCC
Q 008602 423 TRQLKDAVFKLEARGMK---------------------------------------AAELHGDLGKLARSTTLKKFKNGE 463 (560)
Q Consensus 423 ~~~~~~~~~~L~~~~~~---------------------------------------~~~lhg~~~~~~r~~v~~~F~~g~ 463 (560)
+++|+..+-.+.+..++ +.++|||+-+--.+.+.-.|.+|-
T Consensus 393 kkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGL 472 (1041)
T KOG0948|consen 393 KKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGL 472 (1041)
T ss_pred HhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccH
Confidence 99999998777654333 678899999999999999999999
Q ss_pred ceEEEEecCcccCCCCCCCCEEEE----ccCC----CChhhhHhhhccccCCCC--cceEEEEecCc-cHHHHHHH
Q 008602 464 VRVLVTNELSARGLDVAECDLVVN----LDLP----TDSIHYAHRAGRTGRLGR--RGTVVSICEEP-EVFVVKKM 528 (560)
Q Consensus 464 ~~iLvaT~~~~~Gidip~v~~VI~----~~~p----~s~~~y~Qr~GR~gR~g~--~g~~~~l~~~~-e~~~~~~l 528 (560)
+++|+||.+++.|++.|.-.+|+- ||-. -|.-+|+|+.|||||.|. .|.|+++++.. +....+.+
T Consensus 473 vKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m 548 (1041)
T KOG0948|consen 473 VKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDM 548 (1041)
T ss_pred HHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHH
Confidence 999999999999999997666652 2221 267899999999999874 69999998755 43444444
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.4e-29 Score=269.25 Aligned_cols=354 Identities=19% Similarity=0.200 Sum_probs=247.9
Q ss_pred HHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCH
Q 008602 122 LERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSR 201 (560)
Q Consensus 122 ~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~ 201 (560)
......++| .+.++|++|+..+..|..+++|||||+|||.++-.++..++ ..|.++++++|.+
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al----------------~~~qrviYTsPIK 172 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL----------------RDGQRVIYTSPIK 172 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH----------------HcCCceEeccchh
Confidence 344667899 89999999999999999999999999999999999998887 5566799999999
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhc
Q 008602 202 ELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLS 281 (560)
Q Consensus 202 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~ 281 (560)
+|.+|.+++|...++.. ...++.++|+.... +...++|+|.+.|.+++..+...+..+..||+||+|.|.+
T Consensus 173 ALsNQKyrdl~~~fgdv-~~~vGL~TGDv~IN--------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D 243 (1041)
T COG4581 173 ALSNQKYRDLLAKFGDV-ADMVGLMTGDVSIN--------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGD 243 (1041)
T ss_pred hhhhhHHHHHHHHhhhh-hhhccceecceeeC--------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccc
Confidence 99999999999998865 33466677765542 3456999999999999999988899999999999999999
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcC---CCCe--EEeeccccccCCCCC
Q 008602 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG---HDPL--LVQAKNVIPLESMPA 356 (560)
Q Consensus 282 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~ 356 (560)
...+..++.++-.++ ..+++++||||++ +..+|..+.. ..|. +....+..|+..+..
T Consensus 244 ~eRG~VWEE~Ii~lP-----------------~~v~~v~LSATv~-N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~ 305 (1041)
T COG4581 244 RERGVVWEEVIILLP-----------------DHVRFVFLSATVP-NAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVY 305 (1041)
T ss_pred cccchhHHHHHHhcC-----------------CCCcEEEEeCCCC-CHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEe
Confidence 888889988888874 5679999999997 4556655543 2222 223344445444333
Q ss_pred CCCCCCCCCCCCCC---CC---cchhhhcc-cc-cC-CcccceEEEEe--------chhhHHHHHHHHHHhcCCCeEEEE
Q 008602 357 TGPGNLSGPMSGSS---SN---SNLQAKQA-DQ-SL-PPALKHYYCVT--------KLQHKVDTLRRCVHALDAQTVIAF 419 (560)
Q Consensus 357 ~~~~~~~~~~~~~~---~~---~~~~~~~~-~~-~~-~~~~~~~~~~~--------~~~~k~~~l~~~~~~~~~~~~iif 419 (560)
....-+........ .+ .+...... .. .- .+....++... ......-.+...+...+.-++|+|
T Consensus 306 ~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F 385 (1041)
T COG4581 306 VGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVF 385 (1041)
T ss_pred cCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEE
Confidence 22111111000000 00 00000000 00 00 00000000000 111111222333344456799999
Q ss_pred EcChhhHHHHHHHHHHC----------------------------CCc-------------eeeccCCCCHHHHHHHHHH
Q 008602 420 MNNTRQLKDAVFKLEAR----------------------------GMK-------------AAELHGDLGKLARSTTLKK 458 (560)
Q Consensus 420 ~~~~~~~~~~~~~L~~~----------------------------~~~-------------~~~lhg~~~~~~r~~v~~~ 458 (560)
+-++..|+..+..+... +++ ++.+|++|=+..+..+...
T Consensus 386 ~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~L 465 (1041)
T COG4581 386 SFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEEL 465 (1041)
T ss_pred EEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHH
Confidence 99999988877666421 111 4578999999999999999
Q ss_pred hhcCCceEEEEecCcccCCCCCCCCEEE----Ecc----CCCChhhhHhhhccccCCCC--cceEEEEecC
Q 008602 459 FKNGEVRVLVTNELSARGLDVAECDLVV----NLD----LPTDSIHYAHRAGRTGRLGR--RGTVVSICEE 519 (560)
Q Consensus 459 F~~g~~~iLvaT~~~~~Gidip~v~~VI----~~~----~p~s~~~y~Qr~GR~gR~g~--~g~~~~l~~~ 519 (560)
|..|-++|++||.+++.|+++|.-++|+ .+| ...++.+|.|..|||||.|. .|.++++-.+
T Consensus 466 fq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 466 FQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 9999999999999999999999766665 222 23478999999999999885 5888887443
No 95
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=1.3e-28 Score=227.84 Aligned_cols=202 Identities=41% Similarity=0.651 Sum_probs=174.2
Q ss_pred cccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCC
Q 008602 112 FLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD 191 (560)
Q Consensus 112 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||++|+++++..+.... ...+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-----------~~~~ 69 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-----------KKDG 69 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-----------ccCC
Confidence 67899999999999999999999999999999999999999999999999999999999884311 1346
Q ss_pred eeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEE
Q 008602 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFL 271 (560)
Q Consensus 192 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ll 271 (560)
++++|++|+++|+.|+...+..+..... ..+..+.|+.........+. +.++|+|+||+.|.+.+......+++++++
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~l~~l 147 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTN-LKVVVIYGGTSIDKQIRKLK-RGPHIVVATPGRLLDLLERGKLDLSKVKYL 147 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhc-CCCCEEEEChHHHHHHHHcCCCChhhCCEE
Confidence 8899999999999999999998766543 34667777777666555554 456899999999999888888888999999
Q ss_pred EEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEE
Q 008602 272 VLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343 (560)
Q Consensus 272 IiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 343 (560)
|+||+|.+.+.++...+..++..+. ..++++++|||+++++..+...++.+|+.+
T Consensus 148 IvDE~h~~~~~~~~~~~~~~~~~l~-----------------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 148 VLDEADRMLDMGFEDQIREILKLLP-----------------KDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EEeChHHhhccChHHHHHHHHHhCC-----------------cccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999888888999998888764 478999999999999999999999988765
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.8e-28 Score=256.65 Aligned_cols=367 Identities=15% Similarity=0.148 Sum_probs=226.5
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|. .|++.|.-.--.+ ...-|..++||+|||++|.+|++..+ ..|..|+|++||++||.|.+
T Consensus 80 g~-~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~a----------------l~G~~V~VvTpn~yLA~qd~ 140 (896)
T PRK13104 80 GL-RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNA----------------ISGRGVHIVTVNDYLAKRDS 140 (896)
T ss_pred CC-CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHH----------------hcCCCEEEEcCCHHHHHHHH
Confidence 55 6778885444444 34569999999999999999999766 23456999999999999999
Q ss_pred HHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcCC-ccC-----CCeeEEEEechhhhhc
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAGK-LHT-----HGCRFLVLDEIDELLS 281 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~~-~~~-----~~l~llIiDE~h~l~~ 281 (560)
+++..++...+ ..+++++||.+.......+ .+||+||||+.| .+.++.+. +.+ ..+.++||||||.|+=
T Consensus 141 e~m~~l~~~lG-Ltv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 141 QWMKPIYEFLG-LTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred HHHHHHhcccC-ceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 99999987765 4578889988776655443 578999999999 88887663 333 5799999999998651
Q ss_pred ----------------cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEee---------------------
Q 008602 282 ----------------FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT--------------------- 324 (560)
Q Consensus 282 ----------------~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT--------------------- 324 (560)
......+..+...+........... .......+.+.+|..
T Consensus 217 DeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~d---y~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l 293 (896)
T PRK13104 217 DEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGD---YTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESL 293 (896)
T ss_pred hccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCC---EEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccc
Confidence 1234444555555533200000000 000000111111111
Q ss_pred C-------ChHHHHHHH---HcCCCCeEE--------e---eccccc-------------------c------------C
Q 008602 325 V-------PFSVIRAAR---SWGHDPLLV--------Q---AKNVIP-------------------L------------E 352 (560)
Q Consensus 325 ~-------~~~~~~~~~---~~~~~~~~~--------~---~~~~~~-------------------~------------~ 352 (560)
+ ...+....+ .|.++...+ . +++..+ + .
T Consensus 294 ~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Q 373 (896)
T PRK13104 294 YHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQ 373 (896)
T ss_pred cCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHH
Confidence 0 000111111 121111111 0 000000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCC-------CCcchhhhcccccCCc--ccceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEc
Q 008602 353 SMPATGPGNLSGPMSGSS-------SNSNLQAKQADQSLPP--ALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMN 421 (560)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~ 421 (560)
. ....+..+........ ...+..........|. ....-........|..++.+.+.. ..+.++||||+
T Consensus 374 n-~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~ 452 (896)
T PRK13104 374 N-FFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTV 452 (896)
T ss_pred H-HHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 0 0000111111000000 0000000000000000 000111233344565666555533 46899999999
Q ss_pred ChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCC--------------------
Q 008602 422 NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAE-------------------- 481 (560)
Q Consensus 422 ~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~-------------------- 481 (560)
++...+.++..|.+.++++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 453 Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~ 530 (896)
T PRK13104 453 SIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEK 530 (896)
T ss_pred cHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHH
Confidence 999999999999999999999999999999999999999994 9999999999999961
Q ss_pred ------------------CCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHH
Q 008602 482 ------------------CDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 482 ------------------v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
==+||--..+.|..--.|-.||+||.|.+|.+-.|++-+|.-+
T Consensus 531 ~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 531 EAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred HHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 1156666677788888999999999999999999888766433
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.1e-28 Score=255.27 Aligned_cols=363 Identities=16% Similarity=0.172 Sum_probs=231.0
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.|. .|++.|.-.-=.+.+| .+..+.||+|||++|.+|++... -.|.+|-|++||..||.|.
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~a----------------L~G~~V~IvTpn~yLA~rd 138 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNA----------------LTGKGVHVVTVNDYLAKRD 138 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHH----------------HcCCCEEEEecCHHHHHHH
Confidence 366 8889997776666555 59999999999999999996433 1244588999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcCCc------cCCCeeEEEEechhhhh
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAGKL------HTHGCRFLVLDEIDELL 280 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~~~------~~~~l~llIiDE~h~l~ 280 (560)
++++..++...+.. ++++.++.+.......+ .++|++|||+.| .+.+..+.. ..+.+.++||||||.|+
T Consensus 139 ~e~~~~l~~~LGls-v~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 139 AEWMGPLYEFLGLS-VGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHHHHHHHhhcCCe-EEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 99999998776554 78888888777665554 478999999999 777776552 35778999999999855
Q ss_pred -c---------------cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEee--------------CC----
Q 008602 281 -S---------------FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT--------------VP---- 326 (560)
Q Consensus 281 -~---------------~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT--------------~~---- 326 (560)
| ......+..+...+.....+.- ....+.+.+|.. +.
T Consensus 215 IDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~v---------de~~~~v~lte~G~~~~e~~~~~~~ly~~~~~ 285 (830)
T PRK12904 215 IDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTV---------DEKSRTVGLTEEGIEKAEKLLGIENLYDPENI 285 (830)
T ss_pred eccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEE---------EcCCCeeeECHHHHHHHHHHhCCccccChhhh
Confidence 1 1234444555555432100000 001111111110 00
Q ss_pred ---hHHHHHHH---HcCCCCeEE--------e---eccccc-------------------c------------CCC-CC-
Q 008602 327 ---FSVIRAAR---SWGHDPLLV--------Q---AKNVIP-------------------L------------ESM-PA- 356 (560)
Q Consensus 327 ---~~~~~~~~---~~~~~~~~~--------~---~~~~~~-------------------~------------~~~-~~- 356 (560)
..+....+ .+..+...+ . +++..+ + ..+ ..
T Consensus 286 ~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y 365 (830)
T PRK12904 286 ALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMY 365 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhc
Confidence 00000000 011111100 0 000000 0 000 00
Q ss_pred CCCCCCCCCCCCCC----CCcchhhhcccccCCccc--ceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHH
Q 008602 357 TGPGNLSGPMSGSS----SNSNLQAKQADQSLPPAL--KHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 357 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~ 428 (560)
.....++....... ...+..........|... ..-........|..++...+.. ..+.++||||+++..++.
T Consensus 366 ~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~ 445 (830)
T PRK12904 366 EKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSEL 445 (830)
T ss_pred chhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 00001111100000 000000000000000000 0112233455677888887755 567899999999999999
Q ss_pred HHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCC--------------------------
Q 008602 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAEC-------------------------- 482 (560)
Q Consensus 429 ~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v-------------------------- 482 (560)
++..|.+.++++..+|+. +.+|+..+..|+.+...|+|||++++||+||+=-
T Consensus 446 Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~ 523 (830)
T PRK12904 446 LSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEW 523 (830)
T ss_pred HHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999999999996 7899999999999999999999999999999732
Q ss_pred ------------CEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHH
Q 008602 483 ------------DLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 483 ------------~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
=+||--..+.|..--.|-.||+||.|.+|.+-.|++-+|.-+
T Consensus 524 ~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 524 QEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred hhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 267777788899999999999999999999999988776433
No 98
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.9e-28 Score=255.39 Aligned_cols=372 Identities=16% Similarity=0.177 Sum_probs=227.9
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.|. .|++.|.-+-=.+..| .|..+.||+|||+++.+|++... ..|.+|.+++||..||.|.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G--~iaEm~TGEGKTLvA~l~a~l~a----------------l~G~~v~vvT~neyLA~Rd 137 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEG--NIAEMKTGEGKTLTATLPVYLNA----------------LTGKGVHVVTVNEYLSSRD 137 (796)
T ss_pred hCC-CCchhHHHHHHHHhcC--CcccccCCCCCcHHHHHHHHHHH----------------HcCCCeEEEeccHHHHHhh
Confidence 366 8899998776666555 49999999999999999999887 6688899999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHH-HHHHcCC------ccCCCeeEEEEechhhhh
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIA-EISAAGK------LHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~-~~l~~~~------~~~~~l~llIiDE~h~l~ 280 (560)
++++..++...+.. ++++.++......... ..+||+++|..-|. +.|+.+. .....+.+.||||+|.++
T Consensus 138 ~e~~~~~~~~LGl~-vg~i~~~~~~~~r~~~---y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 138 ATEMGELYRWLGLT-VGLNLNSMSPDEKRAA---YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHHHHHHHhcCCe-EEEeCCCCCHHHHHHH---hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 99999998877654 6777766555443333 34689999998874 2333321 123567899999999744
Q ss_pred -c----------c-----chHHHHHHHHHHhccCCCC--CCCCchhhhhhccCceEEEEEe--------------eCC--
Q 008602 281 -S----------F-----NFREAMHRIVEHVGRRSGA--NPREPKSALAMRAERQTIMVSA--------------TVP-- 326 (560)
Q Consensus 281 -~----------~-----~~~~~l~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~SA--------------T~~-- 326 (560)
| . .....+..+...+...... ...............+.+.++. -+.
T Consensus 214 iDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~ 293 (796)
T PRK12906 214 IDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSE 293 (796)
T ss_pred eccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCch
Confidence 1 0 1333444444444321100 0000000000000001111111 000
Q ss_pred -----hHHHHHHH---HcCCCCe--------EEe---eccccc-------------------c-------CCC----CCC
Q 008602 327 -----FSVIRAAR---SWGHDPL--------LVQ---AKNVIP-------------------L-------ESM----PAT 357 (560)
Q Consensus 327 -----~~~~~~~~---~~~~~~~--------~~~---~~~~~~-------------------~-------~~~----~~~ 357 (560)
..+....+ .+..+.. .+. +++..+ + ... ...
T Consensus 294 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr 373 (796)
T PRK12906 294 NTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFR 373 (796)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHH
Confidence 00111000 1111110 000 000000 0 000 000
Q ss_pred CCCCCCCCCCCCCCC-cchhhhc--ccccCCccc--c----eEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhH
Q 008602 358 GPGNLSGPMSGSSSN-SNLQAKQ--ADQSLPPAL--K----HYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQL 426 (560)
Q Consensus 358 ~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~--~----~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~ 426 (560)
.+..+.......... ....... ....+|... . .-........|...+.+.+.. ..+.++||||+++...
T Consensus 374 ~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s 453 (796)
T PRK12906 374 MYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453 (796)
T ss_pred hcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 001111110000000 0000000 000111111 0 111233445677777777754 3789999999999999
Q ss_pred HHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCC---CCC-----EEEEccCCCChhhhH
Q 008602 427 KDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA---ECD-----LVVNLDLPTDSIHYA 498 (560)
Q Consensus 427 ~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip---~v~-----~VI~~~~p~s~~~y~ 498 (560)
+.++..|.+.++++..+|+.+...++..+...++.|. |+|||++++||+||+ +|. +||+++.|.|...|.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~ 531 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDN 531 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHH
Confidence 9999999999999999999999888888888777776 999999999999995 889 999999999999999
Q ss_pred hhhccccCCCCcceEEEEecCccHHH
Q 008602 499 HRAGRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 499 Qr~GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
|++||+||.|.+|.+..|++.+|.-+
T Consensus 532 Ql~GRtGRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 532 QLRGRSGRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred HHhhhhccCCCCcceEEEEeccchHH
Confidence 99999999999999999998776433
No 99
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.6e-28 Score=239.97 Aligned_cols=312 Identities=15% Similarity=0.210 Sum_probs=236.9
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
+...+.+++-.+.+.++..++.++|.|+||||||++.-..+.+.=. ...|.++-|..|+|.-|..+
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGy--------------tk~gk~IgcTQPRRVAAmSV 326 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGY--------------TKGGKKIGCTQPRRVAAMSV 326 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccc--------------ccCCceEeecCcchHHHHHH
Confidence 4555778899999999999999999999999999985555544321 13456699999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh-hhhccc-hH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID-ELLSFN-FR 285 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h-~l~~~~-~~ 285 (560)
+.++.+.++..-+..|++-+.-.+... ...-|-++|.|+|++-+.. ..++.+.++||||||| |-+..+ ..
T Consensus 327 AaRVA~EMgvkLG~eVGYsIRFEdcTS-------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILf 398 (902)
T KOG0923|consen 327 AARVAEEMGVKLGHEVGYSIRFEDCTS-------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILF 398 (902)
T ss_pred HHHHHHHhCcccccccceEEEeccccC-------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHH
Confidence 999999877665555665444333322 2334899999999985443 4567889999999999 433322 23
Q ss_pred HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCC
Q 008602 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGP 365 (560)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (560)
..++.|.+. |++.+++..|||+ +...|..+|...|++..-++-+|+..
T Consensus 399 gLvKDIar~------------------RpdLKllIsSAT~--DAekFS~fFDdapIF~iPGRRyPVdi------------ 446 (902)
T KOG0923|consen 399 GLVKDIARF------------------RPDLKLLISSATM--DAEKFSAFFDDAPIFRIPGRRYPVDI------------ 446 (902)
T ss_pred HHHHHHHhh------------------CCcceEEeecccc--CHHHHHHhccCCcEEeccCcccceee------------
Confidence 333444322 5899999999999 89999999999999988777666543
Q ss_pred CCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHH----HhcCCCeEEEEEcChhhHHHHHHHHHHC-----
Q 008602 366 MSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCV----HALDAQTVIAFMNNTRQLKDAVFKLEAR----- 436 (560)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~----~~~~~~~~iif~~~~~~~~~~~~~L~~~----- 436 (560)
+|-.....+-+++....+ ...+.|.+|||..+.++++.+...|.+.
T Consensus 447 -------------------------~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LG 501 (902)
T KOG0923|consen 447 -------------------------FYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLG 501 (902)
T ss_pred -------------------------ecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhc
Confidence 222233333333322222 2245689999999999998888777653
Q ss_pred ----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC------------------CCCh
Q 008602 437 ----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL------------------PTDS 494 (560)
Q Consensus 437 ----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~------------------p~s~ 494 (560)
.+-+.++|+.++.+.+.++++.-..|-.+|++||+|+++.|.|+++.+||.-++ |-|-
T Consensus 502 ski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 502 SKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred cccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeech
Confidence 356889999999999999999999999999999999999999999999995544 3356
Q ss_pred hhhHhhhccccCCCCcceEEEEecC
Q 008602 495 IHYAHRAGRTGRLGRRGTVVSICEE 519 (560)
Q Consensus 495 ~~y~Qr~GR~gR~g~~g~~~~l~~~ 519 (560)
++..||+|||||.| +|+||-+|+.
T Consensus 582 AsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred hhhhhhccccCCCC-CCceEEeech
Confidence 78899999999996 6999999983
No 100
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.5e-28 Score=253.60 Aligned_cols=350 Identities=20% Similarity=0.261 Sum_probs=239.5
Q ss_pred CChHHHHHHHhhhhcC----CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN----HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~----~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.+.+.|+.|++.+.+. ...++.|.||||||.+|+..+...+ ..|+++|+|+|-..|..|+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L----------------~~GkqvLvLVPEI~Ltpq~ 261 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL----------------AQGKQVLVLVPEIALTPQL 261 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH----------------HcCCEEEEEeccccchHHH
Confidence 5788999999998776 6789999999999999999999998 6789999999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~ 287 (560)
..+|+.+|+ ......+.-.+.......|....+|...|||||-..+ ...|+++++|||||.|.-.-..
T Consensus 262 ~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq---- 329 (730)
T COG1198 262 LARFKARFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQ---- 329 (730)
T ss_pred HHHHHHHhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccC----
Confidence 999999998 4444466667777788889999999999999997777 5689999999999999621100
Q ss_pred HHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCC
Q 008602 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367 (560)
Q Consensus 288 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (560)
...+.++.+......+...++++|+-|||++-+....+........... .+.. ....+.....++.....
T Consensus 330 --------~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~-~R~~-~a~~p~v~iiDmr~e~~ 399 (730)
T COG1198 330 --------EDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLT-NRAG-RARLPRVEIIDMRKEPL 399 (730)
T ss_pred --------CcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEcc-cccc-ccCCCcceEEecccccc
Confidence 0011222222233334457889999999997776666644322211111 1111 00000011111110000
Q ss_pred CCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChh-----------------------
Q 008602 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR----------------------- 424 (560)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~----------------------- 424 (560)
... .. -....++.+.+.+.. +.++|+|.|++.
T Consensus 400 ~~~--------------------~~---lS~~Ll~~i~~~l~~--geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 400 ETG--------------------RS---LSPALLEAIRKTLER--GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPL 454 (730)
T ss_pred ccC--------------------cc---CCHHHHHHHHHHHhc--CCeEEEEEccCCccceeecccCCCcccCCCCCcce
Confidence 000 00 011111222222221 344444444433
Q ss_pred -------------------------------------hHHHHHHHHHHC--CCceeeccCCCCHHH--HHHHHHHhhcCC
Q 008602 425 -------------------------------------QLKDAVFKLEAR--GMKAAELHGDLGKLA--RSTTLKKFKNGE 463 (560)
Q Consensus 425 -------------------------------------~~~~~~~~L~~~--~~~~~~lhg~~~~~~--r~~v~~~F~~g~ 463 (560)
-++++.+.|... +.++..+.++.+... -+..++.|.+|+
T Consensus 455 t~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge 534 (730)
T COG1198 455 TLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGE 534 (730)
T ss_pred EEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCC
Confidence 356667777765 577888888765433 567899999999
Q ss_pred ceEEEEecCcccCCCCCCCCEEEEccCCC------------ChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHH
Q 008602 464 VRVLVTNELSARGLDVAECDLVVNLDLPT------------DSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 464 ~~iLvaT~~~~~Gidip~v~~VI~~~~p~------------s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
.+|||.|++++.|.|.|++..|...|... ....+.|-+|||||.+.+|.+++.+...|++.++.+...
T Consensus 535 ~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 535 ADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred CCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhc
Confidence 99999999999999999999998666553 234578999999999999999999999999998888776
Q ss_pred hCCCccccccCCCceeec
Q 008602 532 LAVPIQACEFTEGRLVIG 549 (560)
Q Consensus 532 l~~~~~~~~~~~~~~~~~ 549 (560)
+...|.+.++.++
T Consensus 615 -----dy~~F~~~El~~R 627 (730)
T COG1198 615 -----DYEAFYEQELAER 627 (730)
T ss_pred -----CHHHHHHHHHHHH
Confidence 5555555554443
No 101
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.2e-28 Score=237.56 Aligned_cols=314 Identities=17% Similarity=0.256 Sum_probs=237.0
Q ss_pred HhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHH
Q 008602 126 EREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205 (560)
Q Consensus 126 ~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~ 205 (560)
++..+.+.+..+.+.+..|..++.++|+|+||||||++....+++.- ...+.-+-|..|+|.-|.
T Consensus 350 eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edG---------------Y~~~GmIGcTQPRRvAAi 414 (1042)
T KOG0924|consen 350 EQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDG---------------YADNGMIGCTQPRRVAAI 414 (1042)
T ss_pred HHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcc---------------cccCCeeeecCchHHHHH
Confidence 34456677899999999999999999999999999998776666542 123345788999999999
Q ss_pred HHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh-hhhccc-
Q 008602 206 QIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID-ELLSFN- 283 (560)
Q Consensus 206 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h-~l~~~~- 283 (560)
.++.++.+.++..-+..|++.+.=.+.+. ....|-++|.|.|++..-. .-.+...+.||+|||| |.+..+
T Consensus 415 SVAkrVa~EM~~~lG~~VGYsIRFEdvT~-------~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDi 486 (1042)
T KOG0924|consen 415 SVAKRVAEEMGVTLGDTVGYSIRFEDVTS-------EDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDI 486 (1042)
T ss_pred HHHHHHHHHhCCccccccceEEEeeecCC-------CceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHH
Confidence 99999999987666655665444333222 2335999999999884332 2346678999999999 444332
Q ss_pred hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCC
Q 008602 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLS 363 (560)
Q Consensus 284 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (560)
....++.++.+ |.+.++|.+|||+ +...|..+|+..|.....++++|+..+....
T Consensus 487 lfGllk~~lar------------------RrdlKliVtSATm--~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~----- 541 (1042)
T KOG0924|consen 487 LFGLLKKVLAR------------------RRDLKLIVTSATM--DAQKFSNFFGNCPQFTIPGRTYPVEIMYTKT----- 541 (1042)
T ss_pred HHHHHHHHHHh------------------hccceEEEeeccc--cHHHHHHHhCCCceeeecCCccceEEEeccC-----
Confidence 23333333332 5788999999999 8999999999999999999988875432221
Q ss_pred CCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHH-HHHHHHH---hcCCCeEEEEEcChhhHHHHHHHHHHC---
Q 008602 364 GPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD-TLRRCVH---ALDAQTVIAFMNNTRQLKDAVFKLEAR--- 436 (560)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~l~~~~~---~~~~~~~iif~~~~~~~~~~~~~L~~~--- 436 (560)
..+.-++ ++.+.+. ....|.++||..+.+.++-.+..++..
T Consensus 542 --------------------------------p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~q 589 (1042)
T KOG0924|consen 542 --------------------------------PVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQ 589 (1042)
T ss_pred --------------------------------chHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHh
Confidence 1111111 1222221 234689999999999888777666542
Q ss_pred -------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC------------------C
Q 008602 437 -------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL------------------P 491 (560)
Q Consensus 437 -------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~------------------p 491 (560)
++.+.+++++|+..-+.+++..-..|..+++|||+++++.+.||++.+||..+. |
T Consensus 590 l~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~p 669 (1042)
T KOG0924|consen 590 LDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVP 669 (1042)
T ss_pred hhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEe
Confidence 567899999999999999999888999999999999999999999999996443 4
Q ss_pred CChhhhHhhhccccCCCCcceEEEEecCc
Q 008602 492 TDSIHYAHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 492 ~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
-|-++--||.|||||.| +|.||-+|+..
T Consensus 670 IS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 670 ISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred chhccchhhccccCCCC-Ccceeeehhhh
Confidence 56788899999999995 69999999863
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=2e-26 Score=211.60 Aligned_cols=307 Identities=19% Similarity=0.299 Sum_probs=218.1
Q ss_pred CChHHHHHHHhhhh----cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSIL----KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~----~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
+++|.|..+-+.+. +..+.||.|-||+|||++....+-..+ ..|.++.+.+|+...+..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al----------------~~G~~vciASPRvDVclEl 160 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL----------------NQGGRVCIASPRVDVCLEL 160 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH----------------hcCCeEEEecCcccchHHH
Confidence 67899988866655 468999999999999999777776666 6688899999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~ 287 (560)
+.+++..|.... +..++|+++..-. ..++|+|...|.++. +.++++||||+|. +...-...
T Consensus 161 ~~Rlk~aF~~~~---I~~Lyg~S~~~fr--------~plvVaTtHQLlrFk-------~aFD~liIDEVDA-FP~~~d~~ 221 (441)
T COG4098 161 YPRLKQAFSNCD---IDLLYGDSDSYFR--------APLVVATTHQLLRFK-------QAFDLLIIDEVDA-FPFSDDQS 221 (441)
T ss_pred HHHHHHhhccCC---eeeEecCCchhcc--------ccEEEEehHHHHHHH-------hhccEEEEecccc-ccccCCHH
Confidence 999999876543 5677777554321 248888888887733 3478999999996 54433334
Q ss_pred HHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCC
Q 008602 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367 (560)
Q Consensus 288 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (560)
+....+... ....-++.+|||++.....-+......+..+....
T Consensus 222 L~~Av~~ar----------------k~~g~~IylTATp~k~l~r~~~~g~~~~~klp~Rf-------------------- 265 (441)
T COG4098 222 LQYAVKKAR----------------KKEGATIYLTATPTKKLERKILKGNLRILKLPARF-------------------- 265 (441)
T ss_pred HHHHHHHhh----------------cccCceEEEecCChHHHHHHhhhCCeeEeecchhh--------------------
Confidence 433333322 24557999999998877766654322211111000
Q ss_pred CCCCCcchhhhcccccCCcccceEEEEechhhHHH------HHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHC-C-
Q 008602 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD------TLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEAR-G- 437 (560)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~------~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~-~- 437 (560)
...+-.+-.+.+..+...++. .|...++. ..+.+++||++++...++++..|++. .
T Consensus 266 --------------H~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~ 331 (441)
T COG4098 266 --------------HGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK 331 (441)
T ss_pred --------------cCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc
Confidence 000111223344444444332 34555544 45789999999999999999999654 3
Q ss_pred CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCC--CChhhhHhhhccccCCCC--cceE
Q 008602 438 MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP--TDSIHYAHRAGRTGRLGR--RGTV 513 (560)
Q Consensus 438 ~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p--~s~~~y~Qr~GR~gR~g~--~g~~ 513 (560)
..++.+|+. ...|.+..++|++|++++|++|++++||+.+|++++.|.-.-. .+-+..+|.+||+||.-. .|.+
T Consensus 332 ~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv 409 (441)
T COG4098 332 ETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDV 409 (441)
T ss_pred cceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcE
Confidence 456788886 5678999999999999999999999999999999998854443 467889999999999743 4777
Q ss_pred EEEecCccHHHH
Q 008602 514 VSICEEPEVFVV 525 (560)
Q Consensus 514 ~~l~~~~e~~~~ 525 (560)
+.|-......+.
T Consensus 410 ~FFH~G~skaM~ 421 (441)
T COG4098 410 LFFHYGKSKAMK 421 (441)
T ss_pred EEEeccchHHHH
Confidence 777655544443
No 103
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.6e-26 Score=242.81 Aligned_cols=149 Identities=20% Similarity=0.278 Sum_probs=126.1
Q ss_pred cccCCCCHHHHHHHH-----hCCCCCC---hHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCC
Q 008602 112 FLELGLPPLLLERLE-----REGFNVP---TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGN 183 (560)
Q Consensus 112 f~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~ 183 (560)
-+.|.+..++.+.+. ..||..| +|+|.++++.+..++++++.++||+|||++|++|++..+.
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL---------- 133 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL---------- 133 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh----------
Confidence 356788888887776 5688888 9999999999999999999999999999999999998762
Q ss_pred CCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcCC
Q 008602 184 GESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAGK 262 (560)
Q Consensus 184 ~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~~ 262 (560)
.+..++|++||++||.|.++++..+....+ ..+++++||.+...+...+ .++|+||||++| .++++.+.
T Consensus 134 ------~g~~v~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd~~ 203 (970)
T PRK12899 134 ------TGKPVHLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRDNS 203 (970)
T ss_pred ------hcCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhCCC
Confidence 122489999999999999999999876654 4478899999988876554 479999999999 99988876
Q ss_pred ccCC-------CeeEEEEechhhhh
Q 008602 263 LHTH-------GCRFLVLDEIDELL 280 (560)
Q Consensus 263 ~~~~-------~l~llIiDE~h~l~ 280 (560)
+.++ .+.++||||||.|+
T Consensus 204 ~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 204 IATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCcCHHHhhcccccEEEEechhhhh
Confidence 6655 45899999999876
No 104
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=8.7e-27 Score=257.96 Aligned_cols=332 Identities=16% Similarity=0.196 Sum_probs=196.2
Q ss_pred CChHHHHHHHhhhhc-----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 132 VPTEVQSAAIPSILK-----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~-----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
.++++|.+||..+.+ .+..|++++||||||.+++..+...+.. ....+||||+|+++|+.|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~--------------~~~~rVLfLvDR~~L~~Q 478 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA--------------KRFRRILFLVDRSALGEQ 478 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc--------------CccCeEEEEecHHHHHHH
Confidence 689999999988763 3678999999999999866555444311 224579999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC-----CccCCCeeEEEEechhhhhc
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG-----KLHTHGCRFLVLDEIDELLS 281 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~-----~~~~~~l~llIiDE~h~l~~ 281 (560)
+.+.|....... ...+..+++.. ............|+|+|...+.+.+... ...+..+++||+|||||...
T Consensus 479 a~~~F~~~~~~~-~~~~~~i~~i~---~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~ 554 (1123)
T PRK11448 479 AEDAFKDTKIEG-DQTFASIYDIK---GLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYT 554 (1123)
T ss_pred HHHHHHhccccc-ccchhhhhchh---hhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCc
Confidence 999998752211 11111111111 1111112233569999999987754321 13457789999999999531
Q ss_pred c---------------chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEe-e
Q 008602 282 F---------------NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ-A 345 (560)
Q Consensus 282 ~---------------~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~-~ 345 (560)
. ++...++.++..+ +...|+|||||...+. ..|. .|+... .
T Consensus 555 ~d~~~~~~~~~~~~~~~~~~~yr~iL~yF-------------------dA~~IGLTATP~r~t~---~~FG-~pv~~Ysl 611 (1123)
T PRK11448 555 LDKEMSEGELQFRDQLDYVSKYRRVLDYF-------------------DAVKIGLTATPALHTT---EIFG-EPVYTYSY 611 (1123)
T ss_pred cccccccchhccchhhhHHHHHHHHHhhc-------------------CccEEEEecCCccchh---HHhC-CeeEEeeH
Confidence 0 1234556665543 2368999999964332 2222 222110 0
Q ss_pred ccccccCCCCCCCC-------CCCCCCCCCCCCCc-----chhhhc-ccccCCccc-------ceEEEEec-hhhHHHHH
Q 008602 346 KNVIPLESMPATGP-------GNLSGPMSGSSSNS-----NLQAKQ-ADQSLPPAL-------KHYYCVTK-LQHKVDTL 404 (560)
Q Consensus 346 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~-------~~~~~~~~-~~~k~~~l 404 (560)
...+. +..+..+ ..+........... ...... ....++..+ ........ .......+
T Consensus 612 ~eAI~--DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l 689 (1123)
T PRK11448 612 REAVI--DGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEEL 689 (1123)
T ss_pred HHHHh--cCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 00000 0000000 00000000000000 000000 000000000 00000000 00011122
Q ss_pred HHHHHhcCCCeEEEEEcChhhHHHHHHHHHHC------CC---ceeeccCCCCHHHHHHHHHHhhcCCc-eEEEEecCcc
Q 008602 405 RRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR------GM---KAAELHGDLGKLARSTTLKKFKNGEV-RVLVTNELSA 474 (560)
Q Consensus 405 ~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~------~~---~~~~lhg~~~~~~r~~v~~~F~~g~~-~iLvaT~~~~ 474 (560)
.+.+....++++||||.++.+++.+++.|.+. +. .+..+||+++ ++..++++|++++. +|+|+++++.
T Consensus 690 ~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~ 767 (1123)
T PRK11448 690 AKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLT 767 (1123)
T ss_pred HHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccc
Confidence 22222234589999999999999999887653 22 3556888875 56789999999887 6999999999
Q ss_pred cCCCCCCCCEEEEccCCCChhhhHhhhccccCCC
Q 008602 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG 508 (560)
Q Consensus 475 ~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 508 (560)
+|+|+|.+.+||++.++.|...|.|++||+.|..
T Consensus 768 TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 768 TGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 9999999999999999999999999999999964
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.1e-25 Score=236.42 Aligned_cols=369 Identities=13% Similarity=0.162 Sum_probs=222.2
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|. .|++.|.-. .+.-.+..|..++||.|||++|.+|++... ..|..|.|++|++.||.|.+
T Consensus 80 gm-~~ydVQliG--gl~L~~G~IaEm~TGEGKTL~a~lp~~l~a----------------l~g~~VhIvT~ndyLA~RD~ 140 (908)
T PRK13107 80 EM-RHFDVQLLG--GMVLDSNRIAEMRTGEGKTLTATLPAYLNA----------------LTGKGVHVITVNDYLARRDA 140 (908)
T ss_pred CC-CcCchHHhc--chHhcCCccccccCCCCchHHHHHHHHHHH----------------hcCCCEEEEeCCHHHHHHHH
Confidence 55 678888543 333345679999999999999999998776 34555999999999999999
Q ss_pred HHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcC-CccC-----CCeeEEEEechhhhhc
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAG-KLHT-----HGCRFLVLDEIDELLS 281 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~-~~~~-----~~l~llIiDE~h~l~~ 281 (560)
+++..++...+.. ++++.++.+.. .......+||++|||+.| .+++..+ .... ..+.+.||||+|.|+-
T Consensus 141 e~m~~l~~~lGls-v~~i~~~~~~~---~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 141 ENNRPLFEFLGLT-VGINVAGLGQQ---EKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HHHHHHHHhcCCe-EEEecCCCCHH---HHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 9999988776544 77788877753 344456789999999999 7777766 2232 6788999999998652
Q ss_pred c----------------chHHHHHHHHHHhccCCCCCCC--CchhhhhhccCceEEEEEee-------------------
Q 008602 282 F----------------NFREAMHRIVEHVGRRSGANPR--EPKSALAMRAERQTIMVSAT------------------- 324 (560)
Q Consensus 282 ~----------------~~~~~l~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~SAT------------------- 324 (560)
. .....+..+...+......... ............+.+.+|..
T Consensus 217 DEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~ 296 (908)
T PRK13107 217 DEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGD 296 (908)
T ss_pred ccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcc
Confidence 1 1333344444443311000000 00000000000111111100
Q ss_pred --C-------ChHHHHHHH---HcCCCCeE--------Ee---eccccc-------------------c-----------
Q 008602 325 --V-------PFSVIRAAR---SWGHDPLL--------VQ---AKNVIP-------------------L----------- 351 (560)
Q Consensus 325 --~-------~~~~~~~~~---~~~~~~~~--------~~---~~~~~~-------------------~----------- 351 (560)
+ ...+....+ .|..+... +. +++..+ +
T Consensus 297 ~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT 376 (908)
T PRK13107 297 SLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASIT 376 (908)
T ss_pred cccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeeh
Confidence 0 000001111 11111111 00 000000 0
Q ss_pred -CCC-CC-CCCCCCCCCCCCCC----CCcchhhhcccccCC---cccceEEEEechhhHHHHHHHHHHh--cCCCeEEEE
Q 008602 352 -ESM-PA-TGPGNLSGPMSGSS----SNSNLQAKQADQSLP---PALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAF 419 (560)
Q Consensus 352 -~~~-~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif 419 (560)
..+ .. .....++....... ..............| ...... .......|..++.+.+.. ..+.++|||
T Consensus 377 ~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~-iy~t~~~K~~Aii~ei~~~~~~GrpVLV~ 455 (908)
T PRK13107 377 FQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADL-VYLTADEKYQAIIKDIKDCRERGQPVLVG 455 (908)
T ss_pred HHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCc-EEeCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 000 00 00000111100000 000000000000000 011111 122234455555554443 358999999
Q ss_pred EcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCC------------------
Q 008602 420 MNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAE------------------ 481 (560)
Q Consensus 420 ~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~------------------ 481 (560)
|+++...+.++..|...++++..+|+.+++.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 456 t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 456 TVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred eCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 99999999999999999999999999999999999999999998 9999999999999961
Q ss_pred -------------------CCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHH
Q 008602 482 -------------------CDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF 523 (560)
Q Consensus 482 -------------------v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~ 523 (560)
==+||--..+.|..--.|-.||+||.|.+|.+-.|++-+|.-
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L 594 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSL 594 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHH
Confidence 126777777888888899999999999999999998877643
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=7.2e-25 Score=238.19 Aligned_cols=363 Identities=17% Similarity=0.206 Sum_probs=221.4
Q ss_pred CChHHHHHHHhhhh----cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSIL----KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~----~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.++|||.+++..+. .+.+.|++.++|.|||++++..+...... ......+|||||. .+..||
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~-------------~~~~gp~LIVvP~-SlL~nW 234 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEY-------------RGITGPHMVVAPK-STLGNW 234 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHh-------------cCCCCCEEEEeCh-HHHHHH
Confidence 68999999999876 46789999999999999876555432200 1223358999997 556899
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHH--HHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQ--EEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~ 285 (560)
.+++.+++.. ..+..+.|....... ...+..+..+|+|+|++.+..... .+.--.+++||+||||++-.. .
T Consensus 235 ~~Ei~kw~p~---l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~ 307 (1033)
T PLN03142 235 MNEIRRFCPV---LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--N 307 (1033)
T ss_pred HHHHHHHCCC---CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--H
Confidence 9999998643 224444443322211 122334567899999999876322 122234689999999996543 2
Q ss_pred HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHH-HHHHH--HcCCCCeEEeeccc--------------
Q 008602 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSV-IRAAR--SWGHDPLLVQAKNV-------------- 348 (560)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~-~~~~~--~~~~~~~~~~~~~~-------------- 348 (560)
..+...+..+ .....+++|+||..+. ..+.. .|+....+-.....
T Consensus 308 Sklskalr~L------------------~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e 369 (1033)
T PLN03142 308 SLLSKTMRLF------------------STNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQE 369 (1033)
T ss_pred HHHHHHHHHh------------------hcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHH
Confidence 2333444433 2234688999985322 22111 11111100000000
Q ss_pred ---------cc----------cCCCCCCCCCCCCCCCCCCCC-----------------CcchhhhcccccCCcccceEE
Q 008602 349 ---------IP----------LESMPATGPGNLSGPMSGSSS-----------------NSNLQAKQADQSLPPALKHYY 392 (560)
Q Consensus 349 ---------~~----------~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 392 (560)
.+ ...++......+......... ............+.....+.+
T Consensus 370 ~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~ 449 (1033)
T PLN03142 370 VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPY 449 (1033)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHH
Confidence 00 000000000000000000000 000000000000000000000
Q ss_pred ---------------EEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHH
Q 008602 393 ---------------CVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455 (560)
Q Consensus 393 ---------------~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v 455 (560)
.......|+..|..++.. ..+.++|||+.....++.+..+|...++.+..+||+++..+|..+
T Consensus 450 L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 450 LFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred hhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 011123456666666654 357899999999999999999999999999999999999999999
Q ss_pred HHHhhcC---CceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceE--EEEecCc--cHHHHHHH
Q 008602 456 LKKFKNG---EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTV--VSICEEP--EVFVVKKM 528 (560)
Q Consensus 456 ~~~F~~g---~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~--~~l~~~~--e~~~~~~l 528 (560)
++.|... .+.+|++|.+++.|||+..+++||+||++||+....|++||+.|.|+...+ |.|+... |...+...
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 9999753 346789999999999999999999999999999999999999999987654 4555544 56666665
Q ss_pred HHHhC
Q 008602 529 QKQLA 533 (560)
Q Consensus 529 ~~~l~ 533 (560)
.++++
T Consensus 610 ~~Kl~ 614 (1033)
T PLN03142 610 YKKLA 614 (1033)
T ss_pred HHHHH
Confidence 55544
No 107
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=212.42 Aligned_cols=326 Identities=18% Similarity=0.248 Sum_probs=237.8
Q ss_pred cCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 109 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
.+.|...+.++...+.++++.-.+.|..+.+.+..+.+++-++++|+||||||.+.-.+++.....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~-------------- 89 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS-------------- 89 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh--------------
Confidence 667999999999999999887778899999999999999999999999999999877777766522
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
....|.+..|.|.-|.+++.++.+.+...-+..|++.+.-.+......- .-+||.++|++..-+. -.+.+.
T Consensus 90 -~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~-------Lky~tDgmLlrEams~-p~l~~y 160 (699)
T KOG0925|consen 90 -HLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTL-------LKYCTDGMLLREAMSD-PLLGRY 160 (699)
T ss_pred -hccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHH-------HHHhcchHHHHHHhhC-cccccc
Confidence 2256999999999999999999988765555556554443333222222 3467888887743332 336788
Q ss_pred eEEEEechh-hhhcc-chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 269 RFLVLDEID-ELLSF-NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 269 ~llIiDE~h-~l~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
+.||+|||| |.+.. .....++++... +++.+++.||||+ ...++-..|...|.+..-+
T Consensus 161 ~viiLDeahERtlATDiLmGllk~v~~~------------------rpdLk~vvmSatl--~a~Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 161 GVIILDEAHERTLATDILMGLLKEVVRN------------------RPDLKLVVMSATL--DAEKFQRYFGNAPLLAVPG 220 (699)
T ss_pred cEEEechhhhhhHHHHHHHHHHHHHHhh------------------CCCceEEEeeccc--chHHHHHHhCCCCeeecCC
Confidence 999999999 43332 223333333322 4789999999999 7888888898888876543
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhH----HHHHHHHHHhcCCCeEEEEEcC
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK----VDTLRRCVHALDAQTVIAFMNN 422 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~~~~~~~~~~iif~~~ 422 (560)
..|.+ .+|.-....+. +..+.++......|.+++|..+
T Consensus 221 -~~PvE-------------------------------------i~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtg 262 (699)
T KOG0925|consen 221 -THPVE-------------------------------------IFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTG 262 (699)
T ss_pred -CCceE-------------------------------------EEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 33332 12222222222 2333334344567999999999
Q ss_pred hhhHHHHHHHHHHC---------CCceeeccCCCCHHHHHHHHHHhhc---C--CceEEEEecCcccCCCCCCCCEEEEc
Q 008602 423 TRQLKDAVFKLEAR---------GMKAAELHGDLGKLARSTTLKKFKN---G--EVRVLVTNELSARGLDVAECDLVVNL 488 (560)
Q Consensus 423 ~~~~~~~~~~L~~~---------~~~~~~lhg~~~~~~r~~v~~~F~~---g--~~~iLvaT~~~~~Gidip~v~~VI~~ 488 (560)
.++++..++.+... ..++.++| +.++.++++.-.. | ..+|+|+|++++..+.|+++.+||.-
T Consensus 263 eeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDp 338 (699)
T KOG0925|consen 263 EEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDP 338 (699)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecC
Confidence 99999999988742 25788888 5555555544332 2 46899999999999999999999965
Q ss_pred cC------------------CCChhhhHhhhccccCCCCcceEEEEecCc
Q 008602 489 DL------------------PTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 489 ~~------------------p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
++ |-|-++..||+||+||. ++|+|+.+|+++
T Consensus 339 Gf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 339 GFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred chhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 44 45778899999999998 789999999854
No 108
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=4.2e-25 Score=198.14 Aligned_cols=168 Identities=32% Similarity=0.522 Sum_probs=136.9
Q ss_pred hHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 134 ~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
||+|.++++.+.+++++++.||||+|||++|+.+++..+.. ....++++++|+++|+.|+++++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~--------------~~~~~~lii~P~~~l~~q~~~~~~~ 66 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE--------------GKDARVLIIVPTRALAEQQFERLRK 66 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT--------------TSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc--------------CCCceEEEEeecccccccccccccc
Confidence 79999999999999999999999999999999999988732 1234899999999999999999999
Q ss_pred HhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHH
Q 008602 214 LLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVE 293 (560)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~ 293 (560)
++..... .+..++++............+.++|+|+||++|.+.+......+.++++||+||+|.+.+..+...+..++.
T Consensus 67 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~ 145 (169)
T PF00270_consen 67 FFSNTNV-RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILR 145 (169)
T ss_dssp HTTTTTS-SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHH
Confidence 8876333 356677777755344444456678999999999999888666777899999999999888788888888888
Q ss_pred HhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHH
Q 008602 294 HVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIR 331 (560)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~ 331 (560)
.+... .+.+++++|||++..+..
T Consensus 146 ~~~~~---------------~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 146 RLKRF---------------KNIQIILLSATLPSNVEK 168 (169)
T ss_dssp HSHTT---------------TTSEEEEEESSSTHHHHH
T ss_pred HhcCC---------------CCCcEEEEeeCCChhHhh
Confidence 76421 257899999999855543
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.93 E-value=1.2e-23 Score=222.23 Aligned_cols=132 Identities=24% Similarity=0.334 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccC
Q 008602 399 HKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476 (560)
Q Consensus 399 ~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~G 476 (560)
.+++.+...+.. ..+.+++|||++...++.++..|.+.++.+..+||++++.+|.+++..|+.|+++|||||+++++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 344444444443 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcc-----CCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHH
Q 008602 477 LDVAECDLVVNLD-----LPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 477 idip~v~~VI~~~-----~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
+|+|++++||++| .|.+...|+||+||+||. ..|.++++++..+..+...+.+.
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999988 799999999999999998 68999999998877666666655
No 110
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=6e-24 Score=214.15 Aligned_cols=320 Identities=18% Similarity=0.201 Sum_probs=211.6
Q ss_pred HHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 135 EVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 135 ~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
...++++.+|..+..+||||+||||||++.-.+++++-..... ...+.-+=|..|+|.-|.-++.++...
T Consensus 259 aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~----------~~~~gmIGITqPRRVAaiamAkRVa~E 328 (1172)
T KOG0926|consen 259 AEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ----------SSSPGMIGITQPRRVAAIAMAKRVAFE 328 (1172)
T ss_pred HHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc----------CCCCCeeeecCchHHHHHHHHHHHHHH
Confidence 4445677778888889999999999999977777775322111 112345888999999999999999888
Q ss_pred hCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh-hhhccc-hHHHHHHHH
Q 008602 215 LGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID-ELLSFN-FREAMHRIV 292 (560)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h-~l~~~~-~~~~l~~i~ 292 (560)
++..+.. |++.+.-.... .....|.++|.|.|++-+.+. +.+..++.||||||| |.+..+ ....+.+|+
T Consensus 329 L~~~~~e-VsYqIRfd~ti-------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV 399 (1172)
T KOG0926|consen 329 LGVLGSE-VSYQIRFDGTI-------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIV 399 (1172)
T ss_pred hccCccc-eeEEEEecccc-------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHH
Confidence 8774433 55433321111 112359999999999977764 447889999999999 433221 122222222
Q ss_pred HHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHH---c-CCCCeEEeeccccccCCCCCCCCCCCCCCCCC
Q 008602 293 EHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARS---W-GHDPLLVQAKNVIPLESMPATGPGNLSGPMSG 368 (560)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (560)
..-....... ..-...++|.||||+ ++..|... | ...|++-...+.+|.
T Consensus 400 ~LR~k~~ke~--------~~~kpLKLIIMSATL--RVsDFtenk~LFpi~pPlikVdARQfPV----------------- 452 (1172)
T KOG0926|consen 400 PLRQKYYKEQ--------CQIKPLKLIIMSATL--RVSDFTENKRLFPIPPPLIKVDARQFPV----------------- 452 (1172)
T ss_pred HHHHHHhhhh--------cccCceeEEEEeeeE--EecccccCceecCCCCceeeeecccCce-----------------
Confidence 1111100000 112467899999999 55554421 2 122222222222211
Q ss_pred CCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHH---HHhcCCCeEEEEEcChhhHHHHHHHHHHCC---C----
Q 008602 369 SSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRC---VHALDAQTVIAFMNNTRQLKDAVFKLEARG---M---- 438 (560)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~---~~~~~~~~~iif~~~~~~~~~~~~~L~~~~---~---- 438 (560)
-.|+-.........++.++. ....+.|.+|||+.+..+++++++.|++.. +
T Consensus 453 -------------------sIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k 513 (1172)
T KOG0926|consen 453 -------------------SIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVK 513 (1172)
T ss_pred -------------------EEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccch
Confidence 12222223333333444433 334678999999999999999999997641 0
Q ss_pred -----c--------------------------------------------------------------------------
Q 008602 439 -----K-------------------------------------------------------------------------- 439 (560)
Q Consensus 439 -----~-------------------------------------------------------------------------- 439 (560)
+
T Consensus 514 ~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~ 593 (1172)
T KOG0926|consen 514 MKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEA 593 (1172)
T ss_pred hhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhh
Confidence 0
Q ss_pred -------------eeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEcc--------CCC------
Q 008602 440 -------------AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLD--------LPT------ 492 (560)
Q Consensus 440 -------------~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~--------~p~------ 492 (560)
|.++++-++.+.+.+++..-..|..-++|||+++++.+.||++.+||..+ .-.
T Consensus 594 ~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~Fe 673 (1172)
T KOG0926|consen 594 EQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFE 673 (1172)
T ss_pred hhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEE
Confidence 55677788999999999999999999999999999999999999999544 333
Q ss_pred ----ChhhhHhhhccccCCCCcceEEEEecCc
Q 008602 493 ----DSIHYAHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 493 ----s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
|-++--||+|||||.| +|.||-+|+..
T Consensus 674 V~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 674 VDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred EEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 3456689999999996 69999999743
No 111
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=5.9e-24 Score=219.65 Aligned_cols=354 Identities=17% Similarity=0.227 Sum_probs=238.1
Q ss_pred HHhCCCCCChHHHHHHH--hhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 125 LEREGFNVPTEVQSAAI--PSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai--~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
.+..|....+.||.+++ +.++++++.+..+||+.|||+++-+.++..+. -.+..++.+.|-..
T Consensus 216 ~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l---------------~~rr~~llilp~vs 280 (1008)
T KOG0950|consen 216 AKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVL---------------CRRRNVLLILPYVS 280 (1008)
T ss_pred HHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHH---------------HHhhceeEecceee
Confidence 34557778999999987 56888999999999999999999998888763 23455888999888
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHH----HHcCCccCCCeeEEEEechhh
Q 008602 203 LGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEI----SAAGKLHTHGCRFLVLDEIDE 278 (560)
Q Consensus 203 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~----l~~~~~~~~~l~llIiDE~h~ 278 (560)
-+......+..+..+.+.. +...+|........+. -.+.|+|.++-..+ +..+ .+..+++||+||.|-
T Consensus 281 iv~Ek~~~l~~~~~~~G~~-ve~y~g~~~p~~~~k~-----~sv~i~tiEkanslin~lie~g--~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFP-VEEYAGRFPPEKRRKR-----ESVAIATIEKANSLINSLIEQG--RLDFLGMVVVDELHM 352 (1008)
T ss_pred hhHHHHhhhhhhccccCCc-chhhcccCCCCCcccc-----eeeeeeehHhhHhHHHHHHhcC--CccccCcEEEeeeee
Confidence 8888777887776666544 4444454444333222 25999999987653 3333 345689999999998
Q ss_pred hhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCC
Q 008602 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATG 358 (560)
Q Consensus 279 l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (560)
+.+.+.+..++.++..+...+.. ...|+++||||+++ ......|+..-+.....+..++..+..
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~~------------~~~~iIGMSATi~N--~~lL~~~L~A~~y~t~fRPv~L~E~ik-- 416 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENLE------------TSVQIIGMSATIPN--NSLLQDWLDAFVYTTRFRPVPLKEYIK-- 416 (1008)
T ss_pred eeccccchHHHHHHHHHHHhccc------------cceeEeeeecccCC--hHHHHHHhhhhheecccCcccchhccC--
Confidence 88888899999998888654433 33789999999953 334445555444433333333333221
Q ss_pred CCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHC
Q 008602 359 PGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEAR 436 (560)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~ 436 (560)
++. ................. +.......+- +.+..++.+ .++.++||||+++..++.++..+...
T Consensus 417 ~G~---~i~~~~r~~~lr~ia~l---------~~~~~g~~dp-D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~ 483 (1008)
T KOG0950|consen 417 PGS---LIYESSRNKVLREIANL---------YSSNLGDEDP-DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKK 483 (1008)
T ss_pred CCc---ccccchhhHHHHHhhhh---------hhhhcccCCC-cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHH
Confidence 111 11111000000000000 0000000000 111111111 23567999999999888776443210
Q ss_pred --------------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCC
Q 008602 437 --------------------------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLD 478 (560)
Q Consensus 437 --------------------------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gid 478 (560)
.+.++++|++++.++|+.+...|+.|.+.|++||++++.|++
T Consensus 484 vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVN 563 (1008)
T KOG0950|consen 484 VPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVN 563 (1008)
T ss_pred hhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCc
Confidence 133788999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcc----CCCChhhhHhhhccccCCC--CcceEEEEecCccHHHHHHHHH
Q 008602 479 VAECDLVVNLD----LPTDSIHYAHRAGRTGRLG--RRGTVVSICEEPEVFVVKKMQK 530 (560)
Q Consensus 479 ip~v~~VI~~~----~p~s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~e~~~~~~l~~ 530 (560)
.|..+++|-.- ...+..+|.|++|||||.| ..|.+++++.+.|......+..
T Consensus 564 LPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 564 LPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred CCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 99998888432 2347789999999999986 4689999999998777665544
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.7e-23 Score=201.87 Aligned_cols=120 Identities=25% Similarity=0.340 Sum_probs=107.7
Q ss_pred cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC
Q 008602 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL 490 (560)
Q Consensus 411 ~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~ 490 (560)
..+.+++|-+-+.+-++.+.++|.+.|+++..+|++...-+|.+++++.+.|.++|||.-+.+-+|+|+|.|.+|.++|.
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDA 523 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 523 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeec
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C-----CChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHH
Q 008602 491 P-----TDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQ 531 (560)
Q Consensus 491 p-----~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~ 531 (560)
. +|-.+.+|-+|||+|. ..|.++++.+.-...+-..+.+.
T Consensus 524 DKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ET 568 (663)
T COG0556 524 DKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDET 568 (663)
T ss_pred CccccccccchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHHHHH
Confidence 5 5889999999999997 67999999876554444444433
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1e-21 Score=204.16 Aligned_cols=295 Identities=20% Similarity=0.248 Sum_probs=196.7
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|| +||..|.-....+..|++.-+.||||.|||+--+...+-.. ..|.++++++||+.|+.|.+
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a----------------~kgkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA----------------KKGKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH----------------hcCCeEEEEecCHHHHHHHH
Confidence 77 99999999999999999999999999999986555444433 45688999999999999999
Q ss_pred HHHHHHhCCCCCceEEEEecCC----ChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccc-
Q 008602 209 REIKKLLGPSDKKAVQQLVGGA----NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN- 283 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~- 283 (560)
+.++++........+...+++. ......+++.+|..||+|+|..-|.+-... +.-.++++|++|++|.++..+
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccc
Confidence 9999987554422222224433 445567788899999999998888663321 111357999999999755322
Q ss_pred ----------hHH-------HHHHHHHHhccCCCCCCCCch---------hhhhhccCceEEEEEeeCChHH---HHHHH
Q 008602 284 ----------FRE-------AMHRIVEHVGRRSGANPREPK---------SALAMRAERQTIMVSATVPFSV---IRAAR 334 (560)
Q Consensus 284 ----------~~~-------~l~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~SAT~~~~~---~~~~~ 334 (560)
|-+ .+..+...+... ....... ........-+++..|||..+.- .-+-.
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~--~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGE--KRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 111 011111111100 0000000 0011234568999999986543 22222
Q ss_pred HcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCC
Q 008602 335 SWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQ 414 (560)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~ 414 (560)
....++-.-. ..-.++...|... ...+.+.++++.. +.
T Consensus 299 LlgFevG~~~--------------------------------------~~LRNIvD~y~~~---~~~e~~~elvk~l-G~ 336 (1187)
T COG1110 299 LLGFEVGSGG--------------------------------------EGLRNIVDIYVES---ESLEKVVELVKKL-GD 336 (1187)
T ss_pred HhCCccCccc--------------------------------------hhhhheeeeeccC---ccHHHHHHHHHHh-CC
Confidence 2211110000 0001122222222 3444555566655 44
Q ss_pred eEEEEEcC---hhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec----CcccCCCCC-CCCEEE
Q 008602 415 TVIAFMNN---TRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE----LSARGLDVA-ECDLVV 486 (560)
Q Consensus 415 ~~iif~~~---~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~----~~~~Gidip-~v~~VI 486 (560)
-.|||++. .+.++++++.|+..|+++..+|+. .++.++.|..|++++||+.. ++-+|||+| .+.++|
T Consensus 337 GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaI 411 (1187)
T COG1110 337 GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAV 411 (1187)
T ss_pred CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEE
Confidence 78999999 889999999999999999999984 47889999999999998864 788999999 588999
Q ss_pred EccCC
Q 008602 487 NLDLP 491 (560)
Q Consensus 487 ~~~~p 491 (560)
+|+.|
T Consensus 412 F~GvP 416 (1187)
T COG1110 412 FYGVP 416 (1187)
T ss_pred EecCC
Confidence 99988
No 114
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=1.8e-22 Score=218.32 Aligned_cols=329 Identities=22% Similarity=0.228 Sum_probs=210.2
Q ss_pred ChHHHHHHHhhhhcC---C-cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKN---H-DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~---~-~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
.++.|..++..+... . .+++.||||+|||++++.+++...... .....+++++.|++.++++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~------------~~~~~r~i~vlP~~t~ie~~~ 263 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK------------IKLKSRVIYVLPFRTIIEDMY 263 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc------------ccccceEEEEccHHHHHHHHH
Confidence 589999999988874 4 788999999999999999998877321 125678999999999999999
Q ss_pred HHHHHHhCCCCCceEEEEecCCChhHHHHH--------------HHcCCCcEEEeCchHHHHHHH-cCCcc-CC--CeeE
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEA--------------LRKNKPAIVVGTPGRIAEISA-AGKLH-TH--GCRF 270 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~IlI~Tp~~l~~~l~-~~~~~-~~--~l~l 270 (560)
+++...++........ ..+. ........ ....-..+.++||-.+..... ..... +. ..++
T Consensus 264 ~r~~~~~~~~~~~~~~-~h~~-~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 264 RRAKEIFGLFSVIGKS-LHSS-SKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred HHHHhhhccccccccc-cccc-ccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 9999886654432110 1111 11110000 000011134444433333111 11111 11 1368
Q ss_pred EEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccc-c
Q 008602 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV-I 349 (560)
Q Consensus 271 lIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~ 349 (560)
+|+||+|-+-+......+..++..+. ..+..++++|||+|+-..+...........+..... .
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~----------------~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~ 405 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALA----------------EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFC 405 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHH----------------hCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccc
Confidence 99999997554434555555555543 257789999999999988888776544333321100 0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhH-HHHHHHHHH-hcCCCeEEEEEcChhhHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHK-VDTLRRCVH-ALDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~l~~~~~-~~~~~~~iif~~~~~~~~ 427 (560)
+... ................ ......... ...+.+++|.||++..+.
T Consensus 406 ~~~~-------------------------------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Ai 454 (733)
T COG1203 406 PKED-------------------------------EPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAI 454 (733)
T ss_pred cccc-------------------------------ccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHH
Confidence 0000 0000000000000000 011111111 135789999999999999
Q ss_pred HHHHHHHHCCCceeeccCCCCHHHHHHHHHHh----hcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcc
Q 008602 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKF----KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGR 503 (560)
Q Consensus 428 ~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F----~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR 503 (560)
++...|+..+.++..+||.+...+|.+.++.+ ..+...|+|||++++-|+|+ +++++| .-+..+...+||+||
T Consensus 455 e~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mI--Te~aPidSLIQR~GR 531 (733)
T COG1203 455 ELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLI--TELAPIDSLIQRAGR 531 (733)
T ss_pred HHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeee--ecCCCHHHHHHHHHH
Confidence 99999999877899999999999998887754 45788999999999999999 488887 233446889999999
Q ss_pred ccCCC--CcceEEEEecCccHHHH
Q 008602 504 TGRLG--RRGTVVSICEEPEVFVV 525 (560)
Q Consensus 504 ~gR~g--~~g~~~~l~~~~e~~~~ 525 (560)
++|.| ..|..+.+.........
T Consensus 532 v~R~g~~~~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 532 VNRHGKKENGKIYVYNDEERGPYL 555 (733)
T ss_pred HhhcccccCCceeEeecccCCCch
Confidence 99999 56778877765544443
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=2.8e-21 Score=206.19 Aligned_cols=139 Identities=25% Similarity=0.310 Sum_probs=119.3
Q ss_pred HHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCC
Q 008602 401 VDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLD 478 (560)
Q Consensus 401 ~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gid 478 (560)
.+.+...+.. ..+.+++|||++...++.++..|...|+++..+||++++.+|..+++.|+.|++.|||||+++++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 3444444433 35789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccC-----CCChhhhHhhhccccCCCCcceEEEEecC---------ccHHHHHHHHHHhCCCccccc
Q 008602 479 VAECDLVVNLDL-----PTDSIHYAHRAGRTGRLGRRGTVVSICEE---------PEVFVVKKMQKQLAVPIQACE 540 (560)
Q Consensus 479 ip~v~~VI~~~~-----p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~---------~e~~~~~~l~~~l~~~~~~~~ 540 (560)
+|++++||++|. |.+...|+||+||+||. ..|.|+++++. .|...+++++..++......+
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999885 78999999999999997 78999999984 456666667766666555444
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.5e-21 Score=206.07 Aligned_cols=128 Identities=15% Similarity=0.172 Sum_probs=113.6
Q ss_pred echhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC
Q 008602 395 TKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472 (560)
Q Consensus 395 ~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~ 472 (560)
.....|..++.+.+.. ..+.++||||+++...+.+...|...++++..+|+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 3445677888888754 36889999999999999999999999999999997 5889999999999999999999999
Q ss_pred cccCCCCC---CCC-----EEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHH
Q 008602 473 SARGLDVA---ECD-----LVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 473 ~~~Gidip---~v~-----~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
++||+||+ .|. +||.++.|.|...|.||+||+||.|.+|.+.+|++.+|.-+
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 99999999 454 34889999999999999999999999999999999877543
No 117
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=1.8e-21 Score=199.49 Aligned_cols=326 Identities=16% Similarity=0.130 Sum_probs=194.7
Q ss_pred CChHHHHHHHhhhhc----C-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 132 VPTEVQSAAIPSILK----N-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~----~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
.++.+|..||..+.+ | +.+|+++.||+|||.+++..+...+.. +.-++||+|+-+++|+.|
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~--------------~~~KRVLFLaDR~~Lv~Q 230 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS--------------GWVKRVLFLADRNALVDQ 230 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc--------------chhheeeEEechHHHHHH
Confidence 589999999987665 3 458999999999999987777665521 345779999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC-----ccCCCeeEEEEechhhhhc
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK-----LHTHGCRFLVLDEIDELLS 281 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~-----~~~~~l~llIiDE~h~l~~ 281 (560)
-+..|..++..... ..++.+.... +..+|.++|+..+........ +....+++||||||||
T Consensus 231 A~~af~~~~P~~~~---~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR--- 296 (875)
T COG4096 231 AYGAFEDFLPFGTK---MNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR--- 296 (875)
T ss_pred HHHHHHHhCCCccc---eeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh---
Confidence 99999887654332 2222222211 134799999999988665542 3334589999999999
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcC-CCCeEEe-------eccccccCC
Q 008602 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG-HDPLLVQ-------AKNVIPLES 353 (560)
Q Consensus 282 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~ 353 (560)
+.....+.|+..+.. -.++++|||......---.+. ..|.... .+...+...
T Consensus 297 -gi~~~~~~I~dYFdA-------------------~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~v 356 (875)
T COG4096 297 -GIYSEWSSILDYFDA-------------------ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKV 356 (875)
T ss_pred -hHHhhhHHHHHHHHH-------------------HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCc
Confidence 334444456655521 234448888653322222222 3333211 111111100
Q ss_pred CCCC--CCCCCCCCCCCC-CCCcchhhhcccccCCc---ccceEEEEechhhHHHHHHHHHHh--cC--CCeEEEEEcCh
Q 008602 354 MPAT--GPGNLSGPMSGS-SSNSNLQAKQADQSLPP---ALKHYYCVTKLQHKVDTLRRCVHA--LD--AQTVIAFMNNT 423 (560)
Q Consensus 354 ~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~l~~~~~~--~~--~~~~iif~~~~ 423 (560)
.... ...+...+...+ ................. .-....+..........+.+.+.. .. .+++||||.+.
T Consensus 357 i~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~ 436 (875)
T COG4096 357 IRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNH 436 (875)
T ss_pred eEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCc
Confidence 0000 000000000000 00000000000000000 011111222222233334444444 22 47999999999
Q ss_pred hhHHHHHHHHHHCC-----CceeeccCCCCHHHHHHHHHHhhc--CCceEEEEecCcccCCCCCCCCEEEEccCCCChhh
Q 008602 424 RQLKDAVFKLEARG-----MKAAELHGDLGKLARSTTLKKFKN--GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496 (560)
Q Consensus 424 ~~~~~~~~~L~~~~-----~~~~~lhg~~~~~~r~~v~~~F~~--g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~ 496 (560)
.+++.+...|.+.. --+..+.|+-. +-...+..|.. .--+|.++.+++.+|+|+|.|..++++-.-.|...
T Consensus 437 dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktk 514 (875)
T COG4096 437 DHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTK 514 (875)
T ss_pred HHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHH
Confidence 99999999998752 23556677643 33445566654 33468888899999999999999999999999999
Q ss_pred hHhhhccccCC
Q 008602 497 YAHRAGRTGRL 507 (560)
Q Consensus 497 y~Qr~GR~gR~ 507 (560)
|.|++||.-|.
T Consensus 515 F~QMvGRGTRl 525 (875)
T COG4096 515 FKQMVGRGTRL 525 (875)
T ss_pred HHHHhcCcccc
Confidence 99999999995
No 118
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=4.3e-20 Score=204.21 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=84.0
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCC--EE
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECD--LV 485 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~--~V 485 (560)
.+++++||+++...++.++..|... ++. .+..+.. .+|..+++.|++|+..||+||+.+.+|||+|+.. .|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 4689999999999999999999752 333 2333333 5788999999999999999999999999999765 55
Q ss_pred EEccCCCC----h--------------------------hhhHhhhccccCCCCcceEEEEecCc--cHHHHHHHHHH
Q 008602 486 VNLDLPTD----S--------------------------IHYAHRAGRTGRLGRRGTVVSICEEP--EVFVVKKMQKQ 531 (560)
Q Consensus 486 I~~~~p~s----~--------------------------~~y~Qr~GR~gR~g~~g~~~~l~~~~--e~~~~~~l~~~ 531 (560)
|...+|.. + ..+.|.+||.-|.....-+++++++. ...+-+.+.+.
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~s 827 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKS 827 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHh
Confidence 66665531 1 23578889999986544455555544 23333444444
No 119
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3.9e-22 Score=191.68 Aligned_cols=330 Identities=17% Similarity=0.200 Sum_probs=216.3
Q ss_pred CCCChHHHHHHHhhhhcC---CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 130 FNVPTEVQSAAIPSILKN---HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 130 ~~~~~~~Q~~ai~~i~~~---~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
-..++|+|..++..+..+ +..+|+.|+|+|||++-+.++.. + .+.+||||.+-..+.|
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i------------------kK~clvLcts~VSVeQ 360 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I------------------KKSCLVLCTSAVSVEQ 360 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e------------------cccEEEEecCccCHHH
Confidence 346899999999998875 78899999999999986655533 2 3459999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC--------CccCCCeeEEEEechhh
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG--------KLHTHGCRFLVLDEIDE 278 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~--------~~~~~~l~llIiDE~h~ 278 (560)
|...|..|..-.+.. ++.++..... .....+.|+|+|+.++..--.+. .+.-..++++++||+|.
T Consensus 361 WkqQfk~wsti~d~~-i~rFTsd~Ke------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv 433 (776)
T KOG1123|consen 361 WKQQFKQWSTIQDDQ-ICRFTSDAKE------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV 433 (776)
T ss_pred HHHHHHhhcccCccc-eEEeeccccc------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc
Confidence 999999986544433 5566654221 12345579999999986521100 12235689999999998
Q ss_pred hhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHH-HcCCCCeEEeeccccccCCCCCC
Q 008602 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAAR-SWGHDPLLVQAKNVIPLESMPAT 357 (560)
Q Consensus 279 l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 357 (560)
+-..-|+..+.-+-.++ -++++||+-.+...... .|+-.|.+...+.. .+.
T Consensus 434 vPA~MFRRVlsiv~aHc----------------------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWm------dL~ 485 (776)
T KOG1123|consen 434 VPAKMFRRVLSIVQAHC----------------------KLGLTATLVREDDKITDLNFLIGPKLYEANWM------DLQ 485 (776)
T ss_pred chHHHHHHHHHHHHHHh----------------------hccceeEEeeccccccccceeecchhhhccHH------HHH
Confidence 66666777666665554 68999998544332221 12333332221111 000
Q ss_pred CCCCCCCCCCCCCCCcchhhhcccccC----------CcccceEEEEechhhHHHHHHHHH--HhcCCCeEEEEEcChhh
Q 008602 358 GPGNLSGPMSGSSSNSNLQAKQADQSL----------PPALKHYYCVTKLQHKVDTLRRCV--HALDAQTVIAFMNNTRQ 425 (560)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~k~~~l~~~~--~~~~~~~~iif~~~~~~ 425 (560)
..+.. .+.+........ ...-+...+..-...|...+.-++ ++.++.++|||..++-.
T Consensus 486 ~kGhI----------A~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfA 555 (776)
T KOG1123|consen 486 KKGHI----------AKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFA 555 (776)
T ss_pred hCCce----------eEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHH
Confidence 00000 000000000000 000111111112223333333333 34578999999999988
Q ss_pred HHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhh-cCCceEEEEecCcccCCCCCCCCEEEEccCC-CChhhhHhhhcc
Q 008602 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK-NGEVRVLVTNELSARGLDVAECDLVVNLDLP-TDSIHYAHRAGR 503 (560)
Q Consensus 426 ~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~-~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p-~s~~~y~Qr~GR 503 (560)
+...+-.|.+ -.++|..++.+|.++++.|+ +..++.++-+.+..+.+|+|.++++|+.+.. .|..+-.||.||
T Consensus 556 Lk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGR 630 (776)
T KOG1123|consen 556 LKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGR 630 (776)
T ss_pred HHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHH
Confidence 8888777643 46789999999999999997 5678999999999999999999999988765 477889999999
Q ss_pred ccCCCC------cceEEEEecCccHHHHHHH
Q 008602 504 TGRLGR------RGTVVSICEEPEVFVVKKM 528 (560)
Q Consensus 504 ~gR~g~------~g~~~~l~~~~e~~~~~~l 528 (560)
..|+.+ .+..|.+++.+...+...-
T Consensus 631 ILRAKk~~de~fnafFYSLVS~DTqEM~YSt 661 (776)
T KOG1123|consen 631 ILRAKKRNDEEFNAFFYSLVSKDTQEMYYST 661 (776)
T ss_pred HHHHhhcCccccceeeeeeeecchHHHHhhh
Confidence 999853 2467888887755544433
No 120
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.87 E-value=3.9e-21 Score=193.69 Aligned_cols=362 Identities=15% Similarity=0.189 Sum_probs=226.2
Q ss_pred CChHHHHHHHhhhhc----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSILK----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.+++||.+.++++.+ |-++|+..++|-|||++.+..+...... ....|| .||+||-..| ..|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~------------~~~~GP-fLVi~P~StL-~NW 232 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGR------------KGIPGP-FLVIAPKSTL-DNW 232 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHh------------cCCCCC-eEEEeeHhhH-HHH
Confidence 689999999998775 6789999999999999854443332210 112233 7899999887 779
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHH--HHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQ--EEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFR 285 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~ 285 (560)
.++|+++.... .+..++|..+.... ..-+..+..+|+|+|++...+--. .+.--+.+|+||||+||+-. ..
T Consensus 233 ~~Ef~rf~P~l---~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN--~~ 305 (971)
T KOG0385|consen 233 MNEFKRFTPSL---NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKN--EK 305 (971)
T ss_pred HHHHHHhCCCc---ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcc--hh
Confidence 99999985543 35556665433222 222345688999999999876311 12223468999999999754 34
Q ss_pred HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHH-------------------HHHHcCCCCeE----
Q 008602 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIR-------------------AARSWGHDPLL---- 342 (560)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~-------------------~~~~~~~~~~~---- 342 (560)
..+.++++.+. ..-.+++|+||-.+... |-.+|..+...
T Consensus 306 s~L~~~lr~f~------------------~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e 367 (971)
T KOG0385|consen 306 SKLSKILREFK------------------TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQE 367 (971)
T ss_pred hHHHHHHHHhc------------------ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHH
Confidence 44556666663 33467788887422111 11111110000
Q ss_pred -E------e-------eccccccCCCCCCCCCCCCCC-------------------CCCCCCCcchhhhcccccCCcccc
Q 008602 343 -V------Q-------AKNVIPLESMPATGPGNLSGP-------------------MSGSSSNSNLQAKQADQSLPPALK 389 (560)
Q Consensus 343 -~------~-------~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 389 (560)
+ . ....+ ...++......+... ..+...............+.....
T Consensus 368 ~v~~Lh~vL~pFlLRR~K~dV-e~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccn 446 (971)
T KOG0385|consen 368 LVSRLHKVLRPFLLRRIKSDV-EKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCN 446 (971)
T ss_pred HHHHHHhhhhHHHHHHHHHhH-hhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcC
Confidence 0 0 00000 000000000000000 000000000111111111111112
Q ss_pred eEEE---------------EechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHH
Q 008602 390 HYYC---------------VTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLAR 452 (560)
Q Consensus 390 ~~~~---------------~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r 452 (560)
|.|+ ....+.|...|.+++.. ..+.+|+||..-..-++-+..++.-.++....+.|.++-++|
T Consensus 447 HPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR 526 (971)
T KOG0385|consen 447 HPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEER 526 (971)
T ss_pred CccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHH
Confidence 2222 12233455566666665 368899999999999999999998899999999999999999
Q ss_pred HHHHHHhhcC---CceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcce--EEEEecCc--cHHHH
Q 008602 453 STTLKKFKNG---EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGT--VVSICEEP--EVFVV 525 (560)
Q Consensus 453 ~~v~~~F~~g---~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~~~l~~~~--e~~~~ 525 (560)
...++.|... .+-+|++|.+.+-||++..+++||.||..||+..-.|..-||.|.|+... +|-|++.. |...+
T Consensus 527 ~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~Iv 606 (971)
T KOG0385|consen 527 EDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIV 606 (971)
T ss_pred HHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHH
Confidence 9999999753 46678999999999999999999999999999999999999999998654 56677765 55566
Q ss_pred HHHHHHhC
Q 008602 526 KKMQKQLA 533 (560)
Q Consensus 526 ~~l~~~l~ 533 (560)
++...++.
T Consensus 607 eRA~~KL~ 614 (971)
T KOG0385|consen 607 ERAAAKLR 614 (971)
T ss_pred HHHHHHhc
Confidence 55555443
No 121
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.87 E-value=2.1e-20 Score=200.21 Aligned_cols=336 Identities=15% Similarity=0.157 Sum_probs=189.6
Q ss_pred CChHHHHHHHhhhhc----------CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCH
Q 008602 132 VPTEVQSAAIPSILK----------NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSR 201 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~----------~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~ 201 (560)
-++++|..|+..+.. .+..+++++||||||++++..+...+. ....+++|||+|+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~--------------~~~~~~vl~lvdR~ 303 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE--------------LLKNPKVFFVVDRR 303 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh--------------hcCCCeEEEEECcH
Confidence 378999999987643 257999999999999997766655441 13357799999999
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC--CccCCCe-eEEEEechhh
Q 008602 202 ELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG--KLHTHGC-RFLVLDEIDE 278 (560)
Q Consensus 202 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~--~~~~~~l-~llIiDE~h~ 278 (560)
+|..|+.+.|........ .+..+.......+......|+|+|.+.|...+... .....+. .+||+|||||
T Consensus 304 ~L~~Q~~~~f~~~~~~~~-------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHr 376 (667)
T TIGR00348 304 ELDYQLMKEFQSLQKDCA-------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHR 376 (667)
T ss_pred HHHHHHHHHHHhhCCCCC-------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcc
Confidence 999999999988743211 11123333334455555679999999998643321 1111111 3899999999
Q ss_pred hhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHH-HHHHcC--CCCeEEe--------ecc
Q 008602 279 LLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIR-AARSWG--HDPLLVQ--------AKN 347 (560)
Q Consensus 279 l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~-~~~~~~--~~~~~~~--------~~~ 347 (560)
.....+...+++. + ++...++|||||...... -...+. ....+.. .+-
T Consensus 377 s~~~~~~~~l~~~---~------------------p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~ 435 (667)
T TIGR00348 377 SQYGELAKNLKKA---L------------------KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGL 435 (667)
T ss_pred ccchHHHHHHHhh---C------------------CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCC
Confidence 5444444444332 2 456899999999532110 011111 0111111 111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcchhh--hcccccCCcc--------cceE----E-EEec---hhhHHHHHHHHHH
Q 008602 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQA--KQADQSLPPA--------LKHY----Y-CVTK---LQHKVDTLRRCVH 409 (560)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~----~-~~~~---~~~k~~~l~~~~~ 409 (560)
..++.......... ........ .......+.. +... . .... .......+.+...
T Consensus 436 ~~~i~Y~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~ 507 (667)
T TIGR00348 436 TVKIDYEDRLPEDH--------LDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYA 507 (667)
T ss_pred eeeEEEEecchhhc--------cChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHH
Confidence 11110000000000 00000000 0000000000 0000 0 0000 0011111111111
Q ss_pred h---cCCCeEEEEEcChhhHHHHHHHHHHC-----CCceeeccCCCCHH---------------------HHHHHHHHhh
Q 008602 410 A---LDAQTVIAFMNNTRQLKDAVFKLEAR-----GMKAAELHGDLGKL---------------------ARSTTLKKFK 460 (560)
Q Consensus 410 ~---~~~~~~iif~~~~~~~~~~~~~L~~~-----~~~~~~lhg~~~~~---------------------~r~~v~~~F~ 460 (560)
. ..+++.+|||.++.++..+...|.+. +.....+++..... ....++++|+
T Consensus 508 ~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk 587 (667)
T TIGR00348 508 KFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFK 587 (667)
T ss_pred HhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhc
Confidence 1 12489999999999999999888664 23445555543322 1246888997
Q ss_pred c-CCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC-C---CcceEEEEec
Q 008602 461 N-GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL-G---RRGTVVSICE 518 (560)
Q Consensus 461 ~-g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~-g---~~g~~~~l~~ 518 (560)
+ +..+|||+++++.+|+|.|.+++++..-+-.+ ..++|.+||+-|. . ..|.++-++.
T Consensus 588 ~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 588 KEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred CCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 6 68999999999999999999999986665554 4689999999994 2 2244555544
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=4.1e-19 Score=182.83 Aligned_cols=335 Identities=15% Similarity=0.139 Sum_probs=210.2
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.|. .|++.|.-+.-.++.| -+..+.||.|||+++.+|++... ..|.+|.|++|+..||.|.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~A----------------L~G~~VhvvT~NdyLA~RD 135 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYA----------------LQGRRVHVITVNDYLARRD 135 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHH----------------HcCCCeEEEcCCHHHHHHH
Confidence 366 8999999998888877 47899999999999999998877 5678899999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHH-HHHHcCC------ccCCCeeEEEEechhhhh
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIA-EISAAGK------LHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~-~~l~~~~------~~~~~l~llIiDE~h~l~ 280 (560)
++++..++...+.. ++++.++......... ..+||+++|..-|. +.|+.+. .....+.+.||||+|.++
T Consensus 136 ae~m~~ly~~LGLs-vg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 136 AEWMGPLYEALGLT-VGWITEESTPEERRAA---YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHHHHHHHhcCCE-EEEECCCCCHHHHHHH---HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 99999998876554 6767666554433333 24689999998763 2333221 223568899999999744
Q ss_pred -cc--------------chHHHHHHHHHHhccCCCCCC--CC---chhhh-----------------------------h
Q 008602 281 -SF--------------NFREAMHRIVEHVGRRSGANP--RE---PKSAL-----------------------------A 311 (560)
Q Consensus 281 -~~--------------~~~~~l~~i~~~~~~~~~~~~--~~---~~~~~-----------------------------~ 311 (560)
|. .....+..+...+........ .. ..... +
T Consensus 212 IDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~A 291 (764)
T PRK12326 212 VDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVA 291 (764)
T ss_pred eccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHH
Confidence 11 123333444444322100000 00 00000 0
Q ss_pred hc------cC-------------------------------------------------------------ceEEEEEee
Q 008602 312 MR------AE-------------------------------------------------------------RQTIMVSAT 324 (560)
Q Consensus 312 ~~------~~-------------------------------------------------------------~~~l~~SAT 324 (560)
.+ .+ .++.+||+|
T Consensus 292 L~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGT 371 (764)
T PRK12326 292 LHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGT 371 (764)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCC
Confidence 00 00 012222222
Q ss_pred CChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHH
Q 008602 325 VPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL 404 (560)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 404 (560)
......++...|.-+...+.+. ......... -........|..++
T Consensus 372 a~t~~~Ef~~iY~l~Vv~IPtn----------------------------------kp~~R~d~~-d~iy~t~~~k~~Ai 416 (764)
T PRK12326 372 AVAAGEQLRQFYDLGVSVIPPN----------------------------------KPNIREDEA-DRVYATAAEKNDAI 416 (764)
T ss_pred ChhHHHHHHHHhCCcEEECCCC----------------------------------CCceeecCC-CceEeCHHHHHHHH
Confidence 2222222211111111100000 000000000 11222344455555
Q ss_pred HHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcC-CceEEEEecCcccCCCCCC
Q 008602 405 RRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG-EVRVLVTNELSARGLDVAE 481 (560)
Q Consensus 405 ~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g-~~~iLvaT~~~~~Gidip~ 481 (560)
.+.+.. ..+.|+||.+.++...+.+...|.+.+++...+++.-...+- .++. ..| .-.|.|||++++||.||.=
T Consensus 417 i~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkL 493 (764)
T PRK12326 417 VEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRL 493 (764)
T ss_pred HHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHH-HHHH--hcCCCCcEEEEecCCCCccCeec
Confidence 554433 368999999999999999999999999999999887443332 2222 234 3468899999999999972
Q ss_pred ---------------CCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHH
Q 008602 482 ---------------CDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF 523 (560)
Q Consensus 482 ---------------v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~ 523 (560)
==+||--..+.|..--.|-.||+||.|.+|.+-.|++-+|.-
T Consensus 494 g~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl 550 (764)
T PRK12326 494 GGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDV 550 (764)
T ss_pred CCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhH
Confidence 236888888999999999999999999999999998876643
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.6e-19 Score=190.43 Aligned_cols=364 Identities=13% Similarity=0.154 Sum_probs=207.3
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|. .|++.|.-.--.+ .+..|..+.||.|||+++.+|++... ..|.+|.|++||..||.|.+
T Consensus 80 Gm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~a----------------l~G~~VhvvT~ndyLA~RD~ 140 (913)
T PRK13103 80 GM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNA----------------LSGKGVHVVTVNDYLARRDA 140 (913)
T ss_pred CC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHH----------------HcCCCEEEEeCCHHHHHHHH
Confidence 65 7888885443333 45589999999999999999998776 56788999999999999999
Q ss_pred HHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcCC------ccCCCeeEEEEechhhhh-
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAGK------LHTHGCRFLVLDEIDELL- 280 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~~------~~~~~l~llIiDE~h~l~- 280 (560)
+++..++...+.. ++++.+..+.......+ .+||++||+..| .+.|+.+. .....+.+.||||+|.++
T Consensus 141 e~m~~l~~~lGl~-v~~i~~~~~~~err~~Y---~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 141 NWMRPLYEFLGLS-VGIVTPFQPPEEKRAAY---AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred HHHHHHhcccCCE-EEEECCCCCHHHHHHHh---cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheec
Confidence 9999998877654 67776665554443333 368999999987 22333221 123789999999999854
Q ss_pred c----------c-----chHHHHHHHHHHhccCCC-----CCCCCchhhhhhccCceEEEEEee----------------
Q 008602 281 S----------F-----NFREAMHRIVEHVGRRSG-----ANPREPKSALAMRAERQTIMVSAT---------------- 324 (560)
Q Consensus 281 ~----------~-----~~~~~l~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~SAT---------------- 324 (560)
| . .....+..+...+..... ...... .......+.+.+|..
T Consensus 217 DEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~---y~idek~~~v~LTe~G~~~~e~~~~~~~i~~ 293 (913)
T PRK13103 217 DEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGH---FTIDEKTRQVELNEAGHQFIEEMLTQAGLLA 293 (913)
T ss_pred cccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCC---eEEEcCCCeeeechHHHHHHHHHhhhCCCcc
Confidence 1 1 233344444444422100 000000 000000001111000
Q ss_pred -C----C-h--HH-------HHHHHHcCCCCeEE--------e---eccccc-------------------c--------
Q 008602 325 -V----P-F--SV-------IRAARSWGHDPLLV--------Q---AKNVIP-------------------L-------- 351 (560)
Q Consensus 325 -~----~-~--~~-------~~~~~~~~~~~~~~--------~---~~~~~~-------------------~-------- 351 (560)
+ . . .. ......|.++...+ . +++..+ +
T Consensus 294 ~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~A 373 (913)
T PRK13103 294 EGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLA 373 (913)
T ss_pred cchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEE
Confidence 0 0 0 00 00001111111110 0 000000 0
Q ss_pred ----CCCCCCCCCCCCCCCCCCC-------CCcchhhhcccccCC---cccceEEEEechhhHHHHHHHHHHh--cCCCe
Q 008602 352 ----ESMPATGPGNLSGPMSGSS-------SNSNLQAKQADQSLP---PALKHYYCVTKLQHKVDTLRRCVHA--LDAQT 415 (560)
Q Consensus 352 ----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~ 415 (560)
.. ....+..+........ ...+..........| ...... .......|..++.+.+.. ..+.|
T Consensus 374 sIT~Qn-fFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~-vy~t~~eK~~Ai~~ei~~~~~~GrP 451 (913)
T PRK13103 374 STTFQN-YFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDL-VYLTAEEKYAAIITDIKECMALGRP 451 (913)
T ss_pred eehHHH-HHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCe-EEcCHHHHHHHHHHHHHHHHhCCCC
Confidence 00 0000011111000000 000000000000000 011111 223334455555555543 35899
Q ss_pred EEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcC-CceEEEEecCcccCCCCC--------------
Q 008602 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG-EVRVLVTNELSARGLDVA-------------- 480 (560)
Q Consensus 416 ~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g-~~~iLvaT~~~~~Gidip-------------- 480 (560)
|||-+.++...+.+...|.+.+++..+++..-...+-+.+- ..| .-.|.|||++++||.||.
T Consensus 452 VLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~ 528 (913)
T PRK13103 452 VLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALEN 528 (913)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhh
Confidence 99999999999999999999999888888764433333333 334 447899999999999994
Q ss_pred -----------------------CCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHH
Q 008602 481 -----------------------ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF 523 (560)
Q Consensus 481 -----------------------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~ 523 (560)
+==+||--..+.|..--.|-.||+||.|.+|.+-.|++-+|.-
T Consensus 529 ~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 529 PTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 1226777778888888899999999999999999888876643
No 124
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=6e-20 Score=189.27 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=115.5
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.|..||.+.+..+-.+...+|+|||.+|||.+-..++-..+.. .....||+++||++|+.|+...+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe--------------sD~~VVIyvaPtKaLVnQvsa~V 576 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE--------------SDSDVVIYVAPTKALVNQVSANV 576 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh--------------cCCCEEEEecchHHHhhhhhHHH
Confidence 5889999999999999999999999999999876666655521 33456999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc---CCccCCCeeEEEEechhhhhccchHHHH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA---GKLHTHGCRFLVLDEIDELLSFNFREAM 288 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~---~~~~~~~l~llIiDE~h~l~~~~~~~~l 288 (560)
..++..........+.|...+ ...+..-.++|+|+-|+.+..++.+ ..-..++++++|+||+|.+....-.-.+
T Consensus 577 yaRF~~~t~~rg~sl~g~ltq---EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~ 653 (1330)
T KOG0949|consen 577 YARFDTKTFLRGVSLLGDLTQ---EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLW 653 (1330)
T ss_pred HHhhccCccccchhhHhhhhH---HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHH
Confidence 888743322222222222111 1111112568999999999998877 3445688999999999986655433334
Q ss_pred HHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh
Q 008602 289 HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF 327 (560)
Q Consensus 289 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 327 (560)
+.++.. ..+.++++|||+.+
T Consensus 654 Eqll~l-------------------i~CP~L~LSATigN 673 (1330)
T KOG0949|consen 654 EQLLLL-------------------IPCPFLVLSATIGN 673 (1330)
T ss_pred HHHHHh-------------------cCCCeeEEecccCC
Confidence 444433 46789999999853
No 125
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=5.9e-19 Score=162.58 Aligned_cols=187 Identities=30% Similarity=0.447 Sum_probs=149.9
Q ss_pred CCCCCChHHHHHHHhhhhcC-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
+++..++++|.++++.+... +.++++++||+|||.++..+++..+.. .....++|++|+..++.|
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~--------------~~~~~~l~~~p~~~~~~~ 69 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR--------------GKGKRVLVLVPTRELAEQ 69 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc--------------cCCCcEEEEeCCHHHHHH
Confidence 35668999999999999998 999999999999999999999988732 113569999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHH
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~ 286 (560)
+...+...+..... ......++.........+..+..+|+++|++.+.+...........++++|+||+|.+....+..
T Consensus 70 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 70 WAEELKKLGPSLGL-KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred HHHHHHHHhccCCe-EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHH
Confidence 99999988654332 23445666665566666666655899999999999888777677788999999999876657777
Q ss_pred HHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 287 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
.+..++..+. +..+++++|||++.........+......+..+
T Consensus 149 ~~~~~~~~~~-----------------~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 149 QLEKLLKLLP-----------------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HHHHHHHhCC-----------------ccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 7777776652 567899999999999998888887766666543
No 126
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.82 E-value=3e-19 Score=188.38 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=106.9
Q ss_pred EEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCC
Q 008602 152 IQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231 (560)
Q Consensus 152 i~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (560)
..+-+|||||.+|+..+...+ ..|.++|||+|...|+.|+.+.|++.|+.......+.-.+..+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l----------------~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~ 228 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATL----------------RAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPAD 228 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHH----------------HcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHH
Confidence 334469999999999999888 5688899999999999999999999987333333333444555
Q ss_pred hhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhh-ccchHHHHHHHHHHhccCCCCCCCCchhhh
Q 008602 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL-SFNFREAMHRIVEHVGRRSGANPREPKSAL 310 (560)
Q Consensus 232 ~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 310 (560)
....|..+.+|...|+|||...+ ...++++++|||||.|.-. ... ..+.++.+......
T Consensus 229 R~~~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~-------------~~p~yhaRdvA~~R 288 (665)
T PRK14873 229 RYRRWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEP-------------RAPYPHAREVALLR 288 (665)
T ss_pred HHHHHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCC-------------CCCCccHHHHHHHH
Confidence 56677888899999999997766 5688999999999999521 111 01111112222223
Q ss_pred hhccCceEEEEEeeCChHHHHHHHH
Q 008602 311 AMRAERQTIMVSATVPFSVIRAARS 335 (560)
Q Consensus 311 ~~~~~~~~l~~SAT~~~~~~~~~~~ 335 (560)
+...+..+|+.|||++-+....+..
T Consensus 289 a~~~~~~lvLgSaTPSles~~~~~~ 313 (665)
T PRK14873 289 AHQHGCALLIGGHARTAEAQALVES 313 (665)
T ss_pred HHHcCCcEEEECCCCCHHHHHHHhc
Confidence 3457889999999998777666554
No 127
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=3.8e-18 Score=173.26 Aligned_cols=350 Identities=16% Similarity=0.159 Sum_probs=212.2
Q ss_pred CChHHHHHHHhhhhc----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSILK----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.+.++|+..+.++.+ +...|+..++|-|||++.+.++.. +... ......+||+||... ..||
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaa-L~~S------------~k~~~paLIVCP~Ti-i~qW 270 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAA-LHHS------------GKLTKPALIVCPATI-IHQW 270 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHH-Hhhc------------ccccCceEEEccHHH-HHHH
Confidence 468999999998765 577899999999999985444433 3211 011245999999865 4899
Q ss_pred HHHHHHHhCCCCCceEEEEecCCCh------------hHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEec
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANR------------SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDE 275 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE 275 (560)
..+|..|..... +..+++.... .....+.......|+|+|++.+.- ....+.-...+++|+||
T Consensus 271 ~~E~~~w~p~~r---v~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 271 MKEFQTWWPPFR---VFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHHhCcceE---EEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecC
Confidence 999999965543 3333332221 111111112234599999988743 12223334578999999
Q ss_pred hhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChH-HHHHHHH--cCC--------------
Q 008602 276 IDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS-VIRAARS--WGH-------------- 338 (560)
Q Consensus 276 ~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~-~~~~~~~--~~~-------------- 338 (560)
.|++-..+- .+...+..+ ...+.+.+|+||..+ +-++... |..
T Consensus 346 GH~IrNpns--~islackki------------------~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f 405 (923)
T KOG0387|consen 346 GHRIRNPNS--KISLACKKI------------------RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNF 405 (923)
T ss_pred cccccCCcc--HHHHHHHhc------------------cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhh
Confidence 999765432 222222222 345677788887533 2222211 110
Q ss_pred -CCeEEeeccccc-----------------------------cC--CCCCCCCCC----CCC-----------------C
Q 008602 339 -DPLLVQAKNVIP-----------------------------LE--SMPATGPGN----LSG-----------------P 365 (560)
Q Consensus 339 -~~~~~~~~~~~~-----------------------------~~--~~~~~~~~~----~~~-----------------~ 365 (560)
.|+.+-...... .. .++.....- ++. .
T Consensus 406 ~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i 485 (923)
T KOG0387|consen 406 EHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKI 485 (923)
T ss_pred hhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHH
Confidence 111110000000 00 000000000 000 0
Q ss_pred CCCCCC-CcchhhhcccccCCc----------ccceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHH
Q 008602 366 MSGSSS-NSNLQAKQADQSLPP----------ALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFK 432 (560)
Q Consensus 366 ~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~ 432 (560)
..+... -..+.........|. ....+......+.|+..+..++.. ..+.+++.|..++.-+.-+...
T Consensus 486 ~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~f 565 (923)
T KOG0387|consen 486 LNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESF 565 (923)
T ss_pred HcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHH
Confidence 000000 000000000000000 001111233445677777777765 4578999999999999999999
Q ss_pred HH-HCCCceeeccCCCCHHHHHHHHHHhhcCCc--eEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCC
Q 008602 433 LE-ARGMKAAELHGDLGKLARSTTLKKFKNGEV--RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGR 509 (560)
Q Consensus 433 L~-~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~--~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 509 (560)
|. ..++.+..+.|..+...|...+++|.+++. -+|++|.+.+-|+++..++-||+||+.||+..-.|..-||-|.|+
T Consensus 566 L~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQ 645 (923)
T KOG0387|consen 566 LRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQ 645 (923)
T ss_pred HHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcC
Confidence 98 579999999999999999999999997754 467889999999999999999999999999999999999999998
Q ss_pred cce--EEEEecCc
Q 008602 510 RGT--VVSICEEP 520 (560)
Q Consensus 510 ~g~--~~~l~~~~ 520 (560)
+.. +|-|++..
T Consensus 646 kkdV~VYRL~t~g 658 (923)
T KOG0387|consen 646 KKDVVVYRLMTAG 658 (923)
T ss_pred ccceEEEEEecCC
Confidence 654 56666544
No 128
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.79 E-value=2.7e-17 Score=171.41 Aligned_cols=351 Identities=14% Similarity=0.099 Sum_probs=197.6
Q ss_pred CChHHHHHHHhhhhcC----------CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCH
Q 008602 132 VPTEVQSAAIPSILKN----------HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSR 201 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~----------~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~ 201 (560)
.++|+|.+.+..+.++ ..+|+.-.+|+|||+..+..+...+...+... ..-.+.||++|.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~---------~~~~k~lVV~P~- 307 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAK---------PLINKPLVVAPS- 307 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCcc---------ccccccEEEccH-
Confidence 5799999999987653 35789999999999997777776662211100 012568999997
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCCCh--hHHHHHH----HcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEec
Q 008602 202 ELGMQIVREIKKLLGPSDKKAVQQLVGGANR--SRQEEAL----RKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDE 275 (560)
Q Consensus 202 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l----~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE 275 (560)
.|+..|+++|.+|....... .-.++++... .++..-+ .....-|++-+++.+.+... .+....++++|+||
T Consensus 308 sLv~nWkkEF~KWl~~~~i~-~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDE 384 (776)
T KOG0390|consen 308 SLVNNWKKEFGKWLGNHRIN-PLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDE 384 (776)
T ss_pred HHHHHHHHHHHHhccccccc-eeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECC
Confidence 56799999999998753322 3345555442 1111111 11122388888888865333 34556789999999
Q ss_pred hhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh-HHHHHHHH-cCCCCeEEeeccccc---
Q 008602 276 IDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF-SVIRAARS-WGHDPLLVQAKNVIP--- 350 (560)
Q Consensus 276 ~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~-~~~~~~~~-~~~~~~~~~~~~~~~--- 350 (560)
.|++-+.. ..+.+.+..+ .-.+.|++|+||.. +..++... ..-.|-+.-....+.
T Consensus 385 GHrlkN~~--s~~~kaL~~l------------------~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~ 444 (776)
T KOG0390|consen 385 GHRLKNSD--SLTLKALSSL------------------KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKF 444 (776)
T ss_pred CCCccchh--hHHHHHHHhc------------------CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHh
Confidence 99854321 1122222222 34567888999853 23222221 111222111100000
Q ss_pred -cCCCCCCCCCCCCCCCCCCC------------CCcchhhhcccccCCcccceEEEEec---------------------
Q 008602 351 -LESMPATGPGNLSGPMSGSS------------SNSNLQAKQADQSLPPALKHYYCVTK--------------------- 396 (560)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 396 (560)
.......+.. .+....... ...+.........+|......++...
T Consensus 445 ~~~i~~~~~~~-~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~ 523 (776)
T KOG0390|consen 445 EIPILRGRDAD-ASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLK 523 (776)
T ss_pred hcccccccCCC-cchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhh
Confidence 0000000000 000000000 00000000000111111111111110
Q ss_pred ----------------------------------------------------hhhHHHHHHHHHHh---cCCCeEEEEEc
Q 008602 397 ----------------------------------------------------LQHKVDTLRRCVHA---LDAQTVIAFMN 421 (560)
Q Consensus 397 ----------------------------------------------------~~~k~~~l~~~~~~---~~~~~~iif~~ 421 (560)
...+...|..++.. .....+.+..|
T Consensus 524 ~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isn 603 (776)
T KOG0390|consen 524 GYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISN 603 (776)
T ss_pred cchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEecc
Confidence 01122222222211 11123444444
Q ss_pred ChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcC--C-ceEEEEecCcccCCCCCCCCEEEEccCCCChhhhH
Q 008602 422 NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG--E-VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYA 498 (560)
Q Consensus 422 ~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g--~-~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~ 498 (560)
.....+.+...++-.|+.+..+||.|+..+|+.+++.|.+- . .-+|.+|.+.+.||++-+++.||.||++||++.-.
T Consensus 604 y~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~ 683 (776)
T KOG0390|consen 604 YTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQ 683 (776)
T ss_pred HHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHH
Confidence 44455555555555699999999999999999999999853 3 34567788999999999999999999999999999
Q ss_pred hhhccccCCCCcceEEEE
Q 008602 499 HRAGRTGRLGRRGTVVSI 516 (560)
Q Consensus 499 Qr~GR~gR~g~~g~~~~l 516 (560)
|.++||-|.|++-.||++
T Consensus 684 QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 684 QAMARAWRDGQKKPVYIY 701 (776)
T ss_pred HHHHHhccCCCcceEEEE
Confidence 999999999998776554
No 129
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.78 E-value=9.5e-19 Score=184.97 Aligned_cols=364 Identities=16% Similarity=0.186 Sum_probs=222.1
Q ss_pred CCChHHHHHHHhhhhc----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 131 NVPTEVQSAAIPSILK----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
.+++.||.+.+++++- +.++|+..++|-|||.+-+..+-...... ...|| .||++|...+ ..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~------------~~~gp-flvvvplst~-~~ 434 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSL------------QIHGP-FLVVVPLSTI-TA 434 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhh------------hccCC-eEEEeehhhh-HH
Confidence 3689999999998664 68999999999999987444433322110 12233 7888998665 66
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHH----cC-----CCcEEEeCchHHHHHH-HcCCccCCCeeEEEEech
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR----KN-----KPAIVVGTPGRIAEIS-AAGKLHTHGCRFLVLDEI 276 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~-----~~~IlI~Tp~~l~~~l-~~~~~~~~~l~llIiDE~ 276 (560)
|.++|..|. .... +.+.|.-...+..+.. +. .++++++|++.++.-. ..+.+ ...+++||||
T Consensus 435 W~~ef~~w~-~mn~----i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i---~w~~~~vDea 506 (1373)
T KOG0384|consen 435 WEREFETWT-DMNV----IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKI---PWRYLLVDEA 506 (1373)
T ss_pred HHHHHHHHh-hhce----eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccC---CcceeeecHH
Confidence 999999986 3322 2333333333332221 22 5789999999986511 11122 3568999999
Q ss_pred hhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC-hHHHHHHHH--cCCCCeEEeecccc----
Q 008602 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP-FSVIRAARS--WGHDPLLVQAKNVI---- 349 (560)
Q Consensus 277 h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~-~~~~~~~~~--~~~~~~~~~~~~~~---- 349 (560)
||+-.. -...+.. +..+ ..-+.+++|.||- +++.++... |+. |.-......+
T Consensus 507 hrLkN~-~~~l~~~-l~~f------------------~~~~rllitgTPlQNsikEL~sLl~Fl~-P~kf~~~~~f~~~~ 565 (1373)
T KOG0384|consen 507 HRLKND-ESKLYES-LNQF------------------KMNHRLLITGTPLQNSLKELWSLLHFLM-PGKFDSWDEFLEEF 565 (1373)
T ss_pred hhcCch-HHHHHHH-HHHh------------------cccceeeecCCCccccHHHHHHHhcccC-CCCCCcHHHHHHhh
Confidence 996532 2222222 3222 2235677777764 334333321 111 1000000000
Q ss_pred ---------cc---------CCCCCCCCCCCCCCCC----------------------------CCCCCcchhhhccccc
Q 008602 350 ---------PL---------ESMPATGPGNLSGPMS----------------------------GSSSNSNLQAKQADQS 383 (560)
Q Consensus 350 ---------~~---------~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~ 383 (560)
.+ ..+.......++.-.. +.... ..........
T Consensus 566 ~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~-~~~lLNimmE 644 (1373)
T KOG0384|consen 566 DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGS-TPSLLNIMME 644 (1373)
T ss_pred cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCC-CchHHHHHHH
Confidence 00 0000000000000000 00000 0000000111
Q ss_pred CCcccceEEEEechhhHH----------HH-------------HHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCC
Q 008602 384 LPPALKHYYCVTKLQHKV----------DT-------------LRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGM 438 (560)
Q Consensus 384 ~~~~~~~~~~~~~~~~k~----------~~-------------l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~ 438 (560)
+.....|.|++.....++ .. |..++.+ ..+++||||..-+..++-++++|...++
T Consensus 645 LkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~y 724 (1373)
T KOG0384|consen 645 LKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGY 724 (1373)
T ss_pred HHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCC
Confidence 112223344433322211 12 2233333 3568999999999999999999999999
Q ss_pred ceeeccCCCCHHHHHHHHHHhh---cCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcce--E
Q 008602 439 KAAELHGDLGKLARSTTLKKFK---NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGT--V 513 (560)
Q Consensus 439 ~~~~lhg~~~~~~r~~v~~~F~---~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~ 513 (560)
+...+.|.+..+.|...++.|. +..+.+|+||-+.+-|||+..+++||+||..||+..=.|...||.|.|++.. +
T Consensus 725 pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 725 PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEE
Confidence 9999999999999999999997 4578899999999999999999999999999999999999999999998754 6
Q ss_pred EEEecCc--cHHHHHHHHHHhCCCccc
Q 008602 514 VSICEEP--EVFVVKKMQKQLAVPIQA 538 (560)
Q Consensus 514 ~~l~~~~--e~~~~~~l~~~l~~~~~~ 538 (560)
|-|++.. |..++.+...+|+.+.--
T Consensus 805 YRLVTk~TvEeEilERAk~KmvLD~aV 831 (1373)
T KOG0384|consen 805 YRLVTKNTVEEEILERAKLKMVLDHAV 831 (1373)
T ss_pred EEEecCCchHHHHHHHHHHHhhhHHHH
Confidence 8888766 667777777777665433
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=3.6e-16 Score=170.63 Aligned_cols=119 Identities=20% Similarity=0.222 Sum_probs=83.5
Q ss_pred cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCC--CCCEEEEc
Q 008602 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA--ECDLVVNL 488 (560)
Q Consensus 411 ~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip--~v~~VI~~ 488 (560)
..+++++|++++.+.++.++..|......+ ...|.-. .+.+++++|++++..||++|..+.+|+|+| +...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 357899999999999999999997654444 4444322 256689999999999999999999999997 35556666
Q ss_pred cCCC----Ch--------------------------hhhHhhhccccCCCCcceEEEEecCc--cHHHHHHHHHHh
Q 008602 489 DLPT----DS--------------------------IHYAHRAGRTGRLGRRGTVVSICEEP--EVFVVKKMQKQL 532 (560)
Q Consensus 489 ~~p~----s~--------------------------~~y~Qr~GR~gR~g~~g~~~~l~~~~--e~~~~~~l~~~l 532 (560)
.+|. ++ ..+.|.+||.-|....--+++++++. ...+-+.+.+.+
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sL 797 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASL 797 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhC
Confidence 5553 21 23688889999986533345555544 233445555554
No 131
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.77 E-value=6.6e-18 Score=144.36 Aligned_cols=118 Identities=34% Similarity=0.600 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccC
Q 008602 399 HKVDTLRRCVHAL--DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476 (560)
Q Consensus 399 ~k~~~l~~~~~~~--~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~G 476 (560)
.+...+..++... .++++||||++...++.+...|.+.+..+..+||+++..+|..+++.|.++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 6777777777765 47899999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEE
Q 008602 477 LDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516 (560)
Q Consensus 477 idip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l 516 (560)
+|+|.+++||++++|++...|.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998988764
No 132
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=1.6e-17 Score=162.36 Aligned_cols=359 Identities=10% Similarity=0.032 Sum_probs=243.2
Q ss_pred HHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
+..+.......+|.++++.+.+|++.++.-.|.+||++++.+.+...... ......++..|+.+++
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~--------------~~~s~~~~~~~~~~~~ 344 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL--------------CHATNSLLPSEMVEHL 344 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc--------------CcccceecchhHHHHh
Confidence 44444456689999999999999999999999999999999888776522 2334478899999998
Q ss_pred HHHHHHHHHHhCCCCC--ceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc----cCCCeeEEEEechhh
Q 008602 205 MQIVREIKKLLGPSDK--KAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL----HTHGCRFLVLDEIDE 278 (560)
Q Consensus 205 ~Q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~----~~~~l~llIiDE~h~ 278 (560)
....+-+.-.+...+. ..+.-.+.+... .....+.+....++++.|..+....-.+.. .+-.+.++++||+|-
T Consensus 345 ~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE-~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~ 423 (1034)
T KOG4150|consen 345 RNGSKGQVVHVEVIKARKSAYVEMSDKLSE-TTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCAL 423 (1034)
T ss_pred hccCCceEEEEEehhhhhcceeecccCCCc-hhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceee
Confidence 8765544332221111 112223333332 334455555668999999988664332222 223456899999994
Q ss_pred hhccchH----HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCC
Q 008602 279 LLSFNFR----EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354 (560)
Q Consensus 279 l~~~~~~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (560)
.-.-++ .+++.+.+.+. ......+.+++-.|||+...+..+...+.-+.......+..|..
T Consensus 424 -Y~~~~~~~~~~~~R~L~~L~~------------~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~-- 488 (1034)
T KOG4150|consen 424 -YLFPTKALAQDQLRALSDLIK------------GFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSS-- 488 (1034)
T ss_pred -eecchhhHHHHHHHHHHHHHH------------HHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCc--
Confidence 222222 23333333221 11224678999999999999988888776655544433322221
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEe---------chhhHHHHHHHHHHh--cCCCeEEEEEcCh
Q 008602 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVT---------KLQHKVDTLRRCVHA--LDAQTVIAFMNNT 423 (560)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~k~~~l~~~~~~--~~~~~~iif~~~~ 423 (560)
-+++++.. ..+.++.....++.+ .++-++|-||+.+
T Consensus 489 ---------------------------------~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R 535 (1034)
T KOG4150|consen 489 ---------------------------------EKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSR 535 (1034)
T ss_pred ---------------------------------cceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHH
Confidence 11111110 111222222222222 3478999999999
Q ss_pred hhHHHHHHHHHHC----C----CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChh
Q 008602 424 RQLKDAVFKLEAR----G----MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSI 495 (560)
Q Consensus 424 ~~~~~~~~~L~~~----~----~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~ 495 (560)
+-|+-+....++. + -.+..+.|+.+.++|.++..+.-.|+..-+++|+.++-||||...+.|++.++|.|.+
T Consensus 536 ~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~a 615 (1034)
T KOG4150|consen 536 KLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIA 615 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHH
Confidence 9888766554432 1 1355688999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccCCCCcceEEEEe--cCccHHHHHHHHHHhCCCccccccCCCce
Q 008602 496 HYAHRAGRTGRLGRRGTVVSIC--EEPEVFVVKKMQKQLAVPIQACEFTEGRL 546 (560)
Q Consensus 496 ~y~Qr~GR~gR~g~~g~~~~l~--~~~e~~~~~~l~~~l~~~~~~~~~~~~~~ 546 (560)
.+.|..|||||.+++..++.+. .+-|.+++..-...++.+..++.++-.+.
T Consensus 616 Nl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~ 668 (1034)
T KOG4150|consen 616 NLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNK 668 (1034)
T ss_pred HHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccH
Confidence 9999999999998877655443 56688888888888888887777765544
No 133
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=1.7e-18 Score=132.95 Aligned_cols=78 Identities=38% Similarity=0.712 Sum_probs=75.4
Q ss_pred HHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCC
Q 008602 431 FKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG 508 (560)
Q Consensus 431 ~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 508 (560)
+.|+..++++..+||++++.+|..+++.|.+++.+|||||+++++|+|+|++++||++++|+|+.+|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.75 E-value=2.9e-16 Score=165.18 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=94.7
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.|. .|++.|.-+.=.+ .+..+..+.||-|||+++.+|++-.. -.|..|.|++++..||.+-
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~a----------------L~G~~VhVvT~NdyLA~RD 133 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNA----------------LTGKGVHIVTVNDYLAKRD 133 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHH----------------hcCCceEEEeCCHHHHHHH
Confidence 366 7888886554333 45689999999999999999997554 3466799999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHH-HHHHcCC------ccCCCeeEEEEechhhhh
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIA-EISAAGK------LHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~-~~l~~~~------~~~~~l~llIiDE~h~l~ 280 (560)
++++..++...+.. ++++.++.+....... ..+||+++|..-|. +.|+.+. .....+.+.||||+|.++
T Consensus 134 ~e~m~pvy~~LGLs-vg~i~~~~~~~err~a---Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 134 QEWMGQIYRFLGLT-VGLIQEGMSSEERKKN---YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHHHHcCCc-eeeeCCCCChHHHHHh---cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99998887766544 6777776665443333 45689999997653 2333222 123568899999999744
No 135
>COG4889 Predicted helicase [General function prediction only]
Probab=99.75 E-value=3.1e-18 Score=174.71 Aligned_cols=340 Identities=17% Similarity=0.152 Sum_probs=180.7
Q ss_pred CCCCChHHHHHHHhhhhcC----CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKN----HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~----~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
.-..|+|+|+.|+++..++ ...=+.+.+|+|||+.++-.. +++. ..++|+|+|+..|.
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eala-----------------~~~iL~LvPSIsLL 219 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EALA-----------------AARILFLVPSISLL 219 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHHh-----------------hhheEeecchHHHH
Confidence 3348999999999998875 345677889999999976544 4331 25699999999999
Q ss_pred HHHHHHHHHHhCCCCCceEEEEecCCC--------------------hhHHHHHH----HcCCCcEEEeCchHHHHHHHc
Q 008602 205 MQIVREIKKLLGPSDKKAVQQLVGGAN--------------------RSRQEEAL----RKNKPAIVVGTPGRIAEISAA 260 (560)
Q Consensus 205 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l----~~~~~~IlI~Tp~~l~~~l~~ 260 (560)
.|..+++...- ........ +.+... .......+ +...--|+++|++.+..+-..
T Consensus 220 sQTlrew~~~~-~l~~~a~a-VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA 297 (1518)
T COG4889 220 SQTLREWTAQK-ELDFRASA-VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA 297 (1518)
T ss_pred HHHHHHHhhcc-CccceeEE-EecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH
Confidence 99887776531 11221111 111111 01111111 112334999999999887776
Q ss_pred CCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC---hHHHHHHHHcC
Q 008602 261 GKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP---FSVIRAARSWG 337 (560)
Q Consensus 261 ~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~---~~~~~~~~~~~ 337 (560)
...-+..+++||.|||||-.+......=..-+.++. ... .-...+.+.|+|||. .+...-++..-
T Consensus 298 Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vH--s~~----------niKa~kRlYmTATPkiy~eS~K~kAkd~s 365 (1518)
T COG4889 298 QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVH--SDQ----------NIKAAKRLYMTATPKIYSESSKAKAKDHS 365 (1518)
T ss_pred HHcCCCCccEEEecchhccccceecccCcccceeec--Ccc----------hhHHHHhhhcccCchhhchhhhhhhhhcc
Confidence 667788899999999999544321110000000000 000 001235678888873 11111111110
Q ss_pred CCCeEE-----eeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhh------HHHHH-H
Q 008602 338 HDPLLV-----QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH------KVDTL-R 405 (560)
Q Consensus 338 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------k~~~l-~ 405 (560)
...+.. .......+..-......-++.. ..+........+...++.........- ++--. .
T Consensus 366 ~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDY-------KVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wn 438 (1518)
T COG4889 366 AELSSMDDELTFGEEFHRLGFGEAVERDLLTDY-------KVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWN 438 (1518)
T ss_pred ceeeccchhhhhchhhhcccHHHHHHhhhhccc-------eEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhh
Confidence 000000 0000000000000000000000 000000000000000000000000000 11111 1
Q ss_pred HHHHhc--------------CCCeEEEEEcChhhHHHHHHHHHH-----------C--C--CceeeccCCCCHHHHHHHH
Q 008602 406 RCVHAL--------------DAQTVIAFMNNTRQLKDAVFKLEA-----------R--G--MKAAELHGDLGKLARSTTL 456 (560)
Q Consensus 406 ~~~~~~--------------~~~~~iif~~~~~~~~~~~~~L~~-----------~--~--~~~~~lhg~~~~~~r~~v~ 456 (560)
-+..+. ...+.+-||.++++...++..+.. . + +.+..+.|.|...+|...+
T Consensus 439 Glakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~ 518 (1518)
T COG4889 439 GLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLL 518 (1518)
T ss_pred hhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHH
Confidence 111110 013467788888877666644432 1 2 3455677999999986554
Q ss_pred H---HhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC
Q 008602 457 K---KFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 457 ~---~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~ 507 (560)
. .|...+++||---.++++|+|+|..+.||++++-.++.+.+|.+||+.|.
T Consensus 519 ~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 519 ELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred hccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 3 45678899998899999999999999999999999999999999999995
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=8.2e-16 Score=160.87 Aligned_cols=357 Identities=16% Similarity=0.149 Sum_probs=203.6
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|. .|++.|.-.--.+..| .|..+.||=|||+++.+|++-.. -.|..|-|++...-||.-=+
T Consensus 76 G~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnA----------------L~GkgVhVVTvNdYLA~RDa 136 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNA----------------LTGKGVIVSTVNEYLAERDA 136 (925)
T ss_pred CC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHH----------------hcCCceEEEecchhhhhhhH
Confidence 66 7889997666555555 68999999999999999997655 34666888899999999888
Q ss_pred HHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHH-HHHHcCC------ccCCCeeEEEEechhhhh-
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIA-EISAAGK------LHTHGCRFLVLDEIDELL- 280 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~-~~l~~~~------~~~~~l~llIiDE~h~l~- 280 (560)
+++..++...+.. +++...+.+....... ..+||++||..-|. +.|+.+. .....+.+.||||+|.++
T Consensus 137 e~mg~vy~fLGLs-vG~i~~~~~~~~rr~a---Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILI 212 (925)
T PRK12903 137 EEMGKVFNFLGLS-VGINKANMDPNLKREA---YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILI 212 (925)
T ss_pred HHHHHHHHHhCCc-eeeeCCCCChHHHHHh---ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheee
Confidence 8887776655443 6666666555443333 45789999998873 3444332 123568899999999744
Q ss_pred cc---------------chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHH---------------
Q 008602 281 SF---------------NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVI--------------- 330 (560)
Q Consensus 281 ~~---------------~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~--------------- 330 (560)
|. .+...+..+...+... .... ....+.+.++..=...+.
T Consensus 213 DEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~-dy~i---------Dek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~ 282 (925)
T PRK12903 213 DEAKTPLIISGGQSNDSNLYLAADQFVRTLKED-DYKI---------DEETKAISLTEKGIKKANKFFKLKNLYDIENSE 282 (925)
T ss_pred cccCCcccccCCCccchHHHHHHHHHHHhcccc-ceEE---------ecccceEEECHhHHHHHHHHcCCCcccChhhHH
Confidence 21 1333334444433211 0000 001111122111000000
Q ss_pred --HHH-------HHcCCCCe--------EEe---eccccc-------------------c------------CCCCCCCC
Q 008602 331 --RAA-------RSWGHDPL--------LVQ---AKNVIP-------------------L------------ESMPATGP 359 (560)
Q Consensus 331 --~~~-------~~~~~~~~--------~~~---~~~~~~-------------------~------------~~~~~~~~ 359 (560)
... ..|..+.. .+. +++..+ + ..+ ...+
T Consensus 283 l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~Qnf-Fr~Y 361 (925)
T PRK12903 283 LVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNF-FRLF 361 (925)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHH-HHhc
Confidence 000 00111110 000 011000 0 000 0000
Q ss_pred CCCCCCCCCCC-------CCcchhhhcccccCCcccce--EEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHH
Q 008602 360 GNLSGPMSGSS-------SNSNLQAKQADQSLPPALKH--YYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 360 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~ 428 (560)
..+........ ...+..........|..... -........|..++.+.+.. ..+.|+||.|.++...+.
T Consensus 362 ~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ 441 (925)
T PRK12903 362 KKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSET 441 (925)
T ss_pred chhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 11111000000 00000000000000000000 01222334455555554443 368899999999999999
Q ss_pred HHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcC-CceEEEEecCcccCCCCCCCC--------EEEEccCCCChhhhHh
Q 008602 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG-EVRVLVTNELSARGLDVAECD--------LVVNLDLPTDSIHYAH 499 (560)
Q Consensus 429 ~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g-~~~iLvaT~~~~~Gidip~v~--------~VI~~~~p~s~~~y~Q 499 (560)
+...|.+.|++..++++.-. +++.-+-. ..| .-.|.|||++++||.||.--. +||....|.|..--.|
T Consensus 442 ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQ 518 (925)
T PRK12903 442 LHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQ 518 (925)
T ss_pred HHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHH
Confidence 99999999999999888633 33333222 345 457899999999999997332 8888889999988899
Q ss_pred hhccccCCCCcceEEEEecCccH
Q 008602 500 RAGRTGRLGRRGTVVSICEEPEV 522 (560)
Q Consensus 500 r~GR~gR~g~~g~~~~l~~~~e~ 522 (560)
..||+||.|.+|.+-.|++-+|.
T Consensus 519 LrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 519 LRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred HhcccccCCCCCcceEEEecchH
Confidence 99999999999999888876653
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=4.8e-15 Score=164.86 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=86.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCC--ceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCC--CCEEEE
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGM--KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAE--CDLVVN 487 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~--~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~--v~~VI~ 487 (560)
.++.++|++++...++.++..|..... ....+.-+++...|.++++.|++++..||++|..+.+|||+|+ +..||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 468999999999999999999976422 1222322444456889999999999999999999999999996 578887
Q ss_pred ccCCCC-h-----------------------------hhhHhhhccccCCCCcceEEEEecCc--cHHHHHHHHHHh
Q 008602 488 LDLPTD-S-----------------------------IHYAHRAGRTGRLGRRGTVVSICEEP--EVFVVKKMQKQL 532 (560)
Q Consensus 488 ~~~p~s-~-----------------------------~~y~Qr~GR~gR~g~~g~~~~l~~~~--e~~~~~~l~~~l 532 (560)
...|.. + ..+.|.+||.-|....--+++++++. ...+-+.+.+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 776641 1 22478889999986543355555544 333445555543
No 138
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=1.4e-16 Score=155.93 Aligned_cols=280 Identities=21% Similarity=0.243 Sum_probs=178.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEe
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~ 227 (560)
+-++-+|||.||||.-++.-.... ...++.-|.|.||..+++++.+. +..+. ++
T Consensus 192 kIi~H~GPTNSGKTy~ALqrl~~a--------------------ksGvycGPLrLLA~EV~~r~na~-----gipCd-L~ 245 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRALQRLKSA--------------------KSGVYCGPLRLLAHEVYDRLNAL-----GIPCD-LL 245 (700)
T ss_pred eEEEEeCCCCCchhHHHHHHHhhh--------------------ccceecchHHHHHHHHHHHhhhc-----CCCcc-cc
Confidence 446679999999998765544332 34799999999999999999875 22232 33
Q ss_pred cCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHH-HHHHHhccCCCCCCCCc
Q 008602 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMH-RIVEHVGRRSGANPREP 306 (560)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~-~i~~~~~~~~~~~~~~~ 306 (560)
+|.+....... ...++.+-||-++..- -..++..||||++.|-+.+.+-.+. .++....
T Consensus 246 TGeE~~~~~~~--~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~A---------- 305 (700)
T KOG0953|consen 246 TGEERRFVLDN--GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAA---------- 305 (700)
T ss_pred ccceeeecCCC--CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhh----------
Confidence 33332211111 1234577777666532 2347899999999988877666553 3333221
Q ss_pred hhhhhhccCceEEEEEeeCChHHHHHHHH----cCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccc
Q 008602 307 KSALAMRAERQTIMVSATVPFSVIRAARS----WGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQ 382 (560)
Q Consensus 307 ~~~~~~~~~~~~l~~SAT~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (560)
.+.++-+ .+.+..+.+. .+.+..+....+..|+
T Consensus 306 -------dEiHLCG-----epsvldlV~~i~k~TGd~vev~~YeRl~pL------------------------------- 342 (700)
T KOG0953|consen 306 -------DEIHLCG-----EPSVLDLVRKILKMTGDDVEVREYERLSPL------------------------------- 342 (700)
T ss_pred -------hhhhccC-----CchHHHHHHHHHhhcCCeeEEEeecccCcc-------------------------------
Confidence 1222222 1233333332 2222222222222111
Q ss_pred cCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCC-ceeeccCCCCHHHHHHHHHHhhc
Q 008602 383 SLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM-KAAELHGDLGKLARSTTLKKFKN 461 (560)
Q Consensus 383 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~-~~~~lhg~~~~~~r~~v~~~F~~ 461 (560)
. ..+.+..-+.+...|.++| |-+++.+..+...+.+.+. ++++++|+++++.|..--..|.+
T Consensus 343 ---------------~-v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd 405 (700)
T KOG0953|consen 343 ---------------V-VEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFND 405 (700)
T ss_pred ---------------e-ehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCC
Confidence 0 0112233344455666665 4457788888888888865 49999999999999999999986
Q ss_pred --CCceEEEEecCcccCCCCCCCCEEEEccCC---------CChhhhHhhhccccCCCC---cceEEEEecCccHHHHHH
Q 008602 462 --GEVRVLVTNELSARGLDVAECDLVVNLDLP---------TDSIHYAHRAGRTGRLGR---RGTVVSICEEPEVFVVKK 527 (560)
Q Consensus 462 --g~~~iLvaT~~~~~Gidip~v~~VI~~~~p---------~s~~~y~Qr~GR~gR~g~---~g~~~~l~~~~e~~~~~~ 527 (560)
++++||||||.+++|+|+ +++.||+|+.- .+..+..|.+|||||.|. .|.+-++.. + .+..
T Consensus 406 ~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~-e---DL~~ 480 (700)
T KOG0953|consen 406 PSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS-E---DLKL 480 (700)
T ss_pred CCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH-h---hHHH
Confidence 999999999999999999 79999988865 356888999999999864 355555433 3 3444
Q ss_pred HHHHhCCCccc
Q 008602 528 MQKQLAVPIQA 538 (560)
Q Consensus 528 l~~~l~~~~~~ 538 (560)
+.+.++.++++
T Consensus 481 L~~~l~~p~ep 491 (700)
T KOG0953|consen 481 LKRILKRPVEP 491 (700)
T ss_pred HHHHHhCCchH
Confidence 55555554443
No 139
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.72 E-value=4.5e-16 Score=150.16 Aligned_cols=341 Identities=14% Similarity=0.190 Sum_probs=214.9
Q ss_pred CChHHHHHHHhhhh-cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~-~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
.+.|+|.+.+...+ .|-.+++..++|-|||++++..+...... --.||+||. .+-..|++.
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE-----------------wplliVcPA-svrftWa~a 259 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE-----------------WPLLIVCPA-SVRFTWAKA 259 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc-----------------CcEEEEecH-HHhHHHHHH
Confidence 45799999998755 46789999999999999976655554411 127899997 455889999
Q ss_pred HHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHH
Q 008602 211 IKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHR 290 (560)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~ 290 (560)
+..++..... +..+.++.+.....-. .+.|.|.+++.+..+-. .+.-..++++|+||.|.+-+. .....+.
T Consensus 260 l~r~lps~~p--i~vv~~~~D~~~~~~t----~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka 330 (689)
T KOG1000|consen 260 LNRFLPSIHP--IFVVDKSSDPLPDVCT----SNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS-KTKRTKA 330 (689)
T ss_pred HHHhcccccc--eEEEecccCCcccccc----CCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc-chhhhhh
Confidence 9999875443 4445554443211111 13499999999876432 222344789999999985543 2222333
Q ss_pred HHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC-------------------hHHHHHHHHcCCCCeEEeecccccc
Q 008602 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP-------------------FSVIRAARSWGHDPLLVQAKNVIPL 351 (560)
Q Consensus 291 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (560)
+..-+. .-.++|++|+|+. ++-.+|...|+.....-...
T Consensus 331 ~~dllk-----------------~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~----- 388 (689)
T KOG1000|consen 331 ATDLLK-----------------VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCF----- 388 (689)
T ss_pred hhhHHH-----------------HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceee-----
Confidence 333221 2237899999973 22233333333221111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchh------------hhcccccCCcccceEEEEec-----------------------
Q 008602 352 ESMPATGPGNLSGPMSGSSSNSNLQ------------AKQADQSLPPALKHYYCVTK----------------------- 396 (560)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~----------------------- 396 (560)
+..+........ .......+|+..+..+.++.
T Consensus 389 -------------Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~ 455 (689)
T KOG1000|consen 389 -------------DYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSM 455 (689)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhh
Confidence 000000000000 00111122222222211110
Q ss_pred --------------hhhHHHHHHHHHHh------cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHH
Q 008602 397 --------------LQHKVDTLRRCVHA------LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTL 456 (560)
Q Consensus 397 --------------~~~k~~~l~~~~~~------~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~ 456 (560)
...|...+.+.+.. ..+.+.+||+....-++.+...+.+.++....+.|..++.+|....
T Consensus 456 e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 456 ERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred hhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 01123333333332 2457899999999999999999999999999999999999999999
Q ss_pred HHhhcC-CceEE-EEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceE--EEEecCc--cHHHHHHHHH
Q 008602 457 KKFKNG-EVRVL-VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTV--VSICEEP--EVFVVKKMQK 530 (560)
Q Consensus 457 ~~F~~g-~~~iL-vaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~--~~l~~~~--e~~~~~~l~~ 530 (560)
+.|... +..|- ++-..++.|+++..++.|++..+++|+.-.+|.--|+.|.|++..+ +.|+... |......+.+
T Consensus 536 qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~ 615 (689)
T KOG1000|consen 536 QSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQ 615 (689)
T ss_pred HHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHH
Confidence 999854 44543 4557788999999999999999999999999999999999987654 3334332 5566666666
Q ss_pred HhCC
Q 008602 531 QLAV 534 (560)
Q Consensus 531 ~l~~ 534 (560)
++.+
T Consensus 616 KL~v 619 (689)
T KOG1000|consen 616 KLDV 619 (689)
T ss_pred HHHH
Confidence 5543
No 140
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.71 E-value=2e-16 Score=160.68 Aligned_cols=137 Identities=18% Similarity=0.263 Sum_probs=114.3
Q ss_pred hhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCC--ceEEEEecCc
Q 008602 398 QHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE--VRVLVTNELS 473 (560)
Q Consensus 398 ~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~--~~iLvaT~~~ 473 (560)
..|...|..++.. ..+.+|+||.....-++-+...|.-.++....+.|...-.+|..+++.|...+ .-+|++|...
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 4566677777765 35789999999999999999999999999999999999999999999998654 4577999999
Q ss_pred ccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcc--eEEEEecCc--cHHHHHHHHHHhCC
Q 008602 474 ARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG--TVVSICEEP--EVFVVKKMQKQLAV 534 (560)
Q Consensus 474 ~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g--~~~~l~~~~--e~~~~~~l~~~l~~ 534 (560)
+-||++..+++||.||...++-+-.|.--|+.|.|+.. .+|.|++.. |...++--.+++..
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~L 904 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLAL 904 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999998754 567788766 44444444444443
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=3.9e-15 Score=156.50 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=94.2
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|. .|++.|.-.--.+ ....|..+.||-|||+++.+|++-.. -.|..|-|++++..||..=+
T Consensus 83 G~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnA----------------L~GkgVhVVTvNdYLA~RDa 143 (939)
T PRK12902 83 GM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNA----------------LTGKGVHVVTVNDYLARRDA 143 (939)
T ss_pred CC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHh----------------hcCCCeEEEeCCHHHHHhHH
Confidence 66 7888885544444 45589999999999999999998766 45667999999999999999
Q ss_pred HHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-----HHHHH--cCCccCCCeeEEEEechhhhh
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-----AEISA--AGKLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-----~~~l~--~~~~~~~~l~llIiDE~h~l~ 280 (560)
+++..++...+.. ++++.++.+..... ....+||++||+..| .+.+. ........+.+.||||+|.++
T Consensus 144 e~m~~vy~~LGLt-vg~i~~~~~~~err---~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 144 EWMGQVHRFLGLS-VGLIQQDMSPEERK---KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHHHHHHhCCe-EEEECCCCChHHHH---HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9888877666444 67776665544333 335678999999887 33222 112234678899999999744
No 142
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.69 E-value=1.9e-15 Score=159.86 Aligned_cols=123 Identities=17% Similarity=0.276 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhcC----------------CCeEEEEEcChhhHHHHHHHHHHCC---CceeeccCCCCHHHHHHHHHH
Q 008602 398 QHKVDTLRRCVHALD----------------AQTVIAFMNNTRQLKDAVFKLEARG---MKAAELHGDLGKLARSTTLKK 458 (560)
Q Consensus 398 ~~k~~~l~~~~~~~~----------------~~~~iif~~~~~~~~~~~~~L~~~~---~~~~~lhg~~~~~~r~~v~~~ 458 (560)
..|+.+|.+++..+. +++++|||.-...++-+.+-|.+.. +....+.|..++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 457778888887642 3579999999999999888887753 445589999999999999999
Q ss_pred hhcC-CceEE-EEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcce--EEEEecCc
Q 008602 459 FKNG-EVRVL-VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGT--VVSICEEP 520 (560)
Q Consensus 459 F~~g-~~~iL-vaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~~~l~~~~ 520 (560)
|.++ .++|| ++|.+.+-|+|+.++++||+++-.||+-.-.|..-||.|.|++.. +|-+++..
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9998 78888 556899999999999999999999999999999999999998765 56677654
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.67 E-value=4.8e-16 Score=141.30 Aligned_cols=154 Identities=21% Similarity=0.212 Sum_probs=104.1
Q ss_pred CChHHHHHHHhhhhc-------CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 132 VPTEVQSAAIPSILK-------NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~-------~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
+++++|.+++..+.. .+.+++.+|||||||.+++..+.... . ++++++|+..|+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~----------------~---~~l~~~p~~~l~ 63 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA----------------R---KVLIVAPNISLL 63 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH----------------C---EEEEEESSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc----------------c---ceeEecCHHHHH
Confidence 689999999999884 58899999999999999887777766 1 699999999999
Q ss_pred HHHHHHHHHHhCCCCCceEE---------EEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC-----------cc
Q 008602 205 MQIVREIKKLLGPSDKKAVQ---------QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK-----------LH 264 (560)
Q Consensus 205 ~Q~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~-----------~~ 264 (560)
.|+.+.+..+.......... ....................+++++|...|........ ..
T Consensus 64 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (184)
T PF04851_consen 64 EQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLL 143 (184)
T ss_dssp HHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGG
T ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhc
Confidence 99999996654332111000 01111111122233445566899999999988654321 23
Q ss_pred CCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC
Q 008602 265 THGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326 (560)
Q Consensus 265 ~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~ 326 (560)
....++||+||||++.+..- ++.++. . +...+|+|||||.
T Consensus 144 ~~~~~~vI~DEaH~~~~~~~---~~~i~~-~------------------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 144 KNKFDLVIIDEAHHYPSDSS---YREIIE-F------------------KAAFILGLTATPF 183 (184)
T ss_dssp GGSESEEEEETGGCTHHHHH---HHHHHH-S------------------SCCEEEEEESS-S
T ss_pred cccCCEEEEehhhhcCCHHH---HHHHHc-C------------------CCCeEEEEEeCcc
Confidence 35678999999999655442 333333 1 4567999999984
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.67 E-value=8.9e-14 Score=145.22 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhc----CCceEEEEecCcccCC
Q 008602 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN----GEVRVLVTNELSARGL 477 (560)
Q Consensus 402 ~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~----g~~~iLvaT~~~~~Gi 477 (560)
+.+..++.. .+|.++|.+.+...++.++..|...--....+.|+.+ .+...++.|+. |...||++|+.+.+||
T Consensus 460 ~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 344444443 4678999999999999999999764223344566543 35667888886 4789999999999999
Q ss_pred CC--------C--CCCEEEEccCCCCh-------------------------hhhHhhhccccCCCCc--ceEEEEecCc
Q 008602 478 DV--------A--ECDLVVNLDLPTDS-------------------------IHYAHRAGRTGRLGRR--GTVVSICEEP 520 (560)
Q Consensus 478 di--------p--~v~~VI~~~~p~s~-------------------------~~y~Qr~GR~gR~g~~--g~~~~l~~~~ 520 (560)
|+ | .+..||+..+|..+ -.+.|-+||.-|.... --.+.++++.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 99 3 48889887776322 2257888999998654 2344444443
No 145
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.66 E-value=4.7e-15 Score=128.36 Aligned_cols=144 Identities=38% Similarity=0.541 Sum_probs=103.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEe
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~ 227 (560)
+++++.++||+|||.+++.++...... ....+++|++|++.++.|+.+.+...... ...+..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--------------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~ 64 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--------------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLI 64 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--------------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEe
Confidence 468999999999999999988887622 23567999999999999999999888654 23355555
Q ss_pred cCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCch
Q 008602 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPK 307 (560)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 307 (560)
+........ .......+|+++|++.+.............++++||||+|.+................
T Consensus 65 ~~~~~~~~~-~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~------------ 131 (144)
T cd00046 65 GGTSIKQQE-KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKL------------ 131 (144)
T ss_pred cCcchhHHH-HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhC------------
Confidence 554444433 3334567899999999988777665556678999999999866654433321111111
Q ss_pred hhhhhccCceEEEEEeeC
Q 008602 308 SALAMRAERQTIMVSATV 325 (560)
Q Consensus 308 ~~~~~~~~~~~l~~SAT~ 325 (560)
....+++++||||
T Consensus 132 -----~~~~~~i~~saTp 144 (144)
T cd00046 132 -----PKDRQVLLLSATP 144 (144)
T ss_pred -----CccceEEEEeccC
Confidence 2567899999996
No 146
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.63 E-value=7.9e-16 Score=157.81 Aligned_cols=346 Identities=15% Similarity=0.228 Sum_probs=218.0
Q ss_pred ChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
.-.+-...+.++..+..++|-++||+|||..+...+++.+..+. ......+.+..|+|..+.-+++++.
T Consensus 379 va~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-----------~g~~~na~v~qprrisaisiaerva 447 (1282)
T KOG0921|consen 379 VAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-----------NGASFNAVVSQPRRISAISLAERVA 447 (1282)
T ss_pred HHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-----------ccccccceeccccccchHHHHHHHH
Confidence 34455566677777888999999999999999999999884321 2334558888999999999998887
Q ss_pred HHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhcc--chHHHH-H
Q 008602 213 KLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF--NFREAM-H 289 (560)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~--~~~~~l-~ 289 (560)
..-+......+++-..-.+....- .+ -|.++|-+.+++++..... .+.++|+||.|. .+. +|...+ .
T Consensus 448 ~er~e~~g~tvgy~vRf~Sa~prp----yg--~i~fctvgvllr~~e~glr---g~sh~i~deihe-rdv~~dfll~~lr 517 (1282)
T KOG0921|consen 448 NERGEEVGETCGYNVRFDSATPRP----YG--SIMFCTVGVLLRMMENGLR---GISHVIIDEIHE-RDVDTDFVLIVLR 517 (1282)
T ss_pred HhhHHhhccccccccccccccccc----cc--ceeeeccchhhhhhhhccc---ccccccchhhhh-hccchHHHHHHHH
Confidence 754433333332211111111100 01 3999999999998876544 467999999993 443 343333 2
Q ss_pred HHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCC
Q 008602 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGS 369 (560)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (560)
.+... -++..++++|||+ ++..+...|...|.....+++++...+...+...........
T Consensus 518 ~m~~t------------------y~dl~v~lmsatI--dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~ 577 (1282)
T KOG0921|consen 518 EMIST------------------YRDLRVVLMSATI--DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSE 577 (1282)
T ss_pred hhhcc------------------chhhhhhhhhccc--chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCC
Confidence 22211 2567888999998 677777777777777777777665433222111111110000
Q ss_pred CCCcch-------------hhhcc----cccCCcccceEEEEec----hhhHHHHHHHHH-HhcCCCeEEEEEcChhhHH
Q 008602 370 SSNSNL-------------QAKQA----DQSLPPALKHYYCVTK----LQHKVDTLRRCV-HALDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 370 ~~~~~~-------------~~~~~----~~~~~~~~~~~~~~~~----~~~k~~~l~~~~-~~~~~~~~iif~~~~~~~~ 427 (560)
...... +.... +............... ....++++...+ ...-.+-+++|.+.-..+.
T Consensus 578 ~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~ 657 (1282)
T KOG0921|consen 578 PSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIM 657 (1282)
T ss_pred cCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhh
Confidence 000000 00000 0000000000000000 011112221111 1123578999999999999
Q ss_pred HHHHHHHHC-------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCC---------
Q 008602 428 DAVFKLEAR-------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP--------- 491 (560)
Q Consensus 428 ~~~~~L~~~-------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p--------- 491 (560)
.++.+|... .+.+..+|++....++.++.+.-..|..+++++|++++..+.|.++..||..+.-
T Consensus 658 ~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~n 737 (1282)
T KOG0921|consen 658 TLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHN 737 (1282)
T ss_pred hhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeecccc
Confidence 999888654 3678899999999999999999999999999999999999999998888743322
Q ss_pred ---------CChhhhHhhhccccCCCCcceEEEEecCc
Q 008602 492 ---------TDSIHYAHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 492 ---------~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
.|.....||.||+||. ++|.|+.+++.-
T Consensus 738 n~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 738 NMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred ceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 2446679999999998 789999998744
No 147
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.62 E-value=7.2e-14 Score=135.04 Aligned_cols=124 Identities=26% Similarity=0.312 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHh----cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcC-CceE-EEEe
Q 008602 397 LQHKVDTLRRCVHA----LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG-EVRV-LVTN 470 (560)
Q Consensus 397 ~~~k~~~l~~~~~~----~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g-~~~i-LvaT 470 (560)
.+.|+++|.+.+.. ...-+.|||.....-++-+...|.+.|+.+.-+.|+|++..|...++.|.+. .+.| ||+-
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSL 697 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSL 697 (791)
T ss_pred chhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEe
Confidence 44577777665543 3456889999999999999999999999999999999999999999999875 4555 4666
Q ss_pred cCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCc--ceEEEEecCc
Q 008602 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRR--GTVVSICEEP 520 (560)
Q Consensus 471 ~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~--g~~~~l~~~~ 520 (560)
...+..+++..+..|+.+|+.|+++--.|..-|..|.|+. -.++.|+-+.
T Consensus 698 kAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 698 KAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 8888899999999999999999999999999999998864 3566666444
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.62 E-value=9.2e-13 Score=142.21 Aligned_cols=123 Identities=21% Similarity=0.244 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHC-CCceeeccCCCCHHHHHHHHHHhh----cCCceEEEEecCcccCC
Q 008602 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFK----NGEVRVLVTNELSARGL 477 (560)
Q Consensus 403 ~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~-~~~~~~lhg~~~~~~r~~v~~~F~----~g~~~iLvaT~~~~~Gi 477 (560)
.+.+++. .++.++||+++...++.++..|... +.. ...+|.. .+..+++.|+ .|+..||++|..+.+||
T Consensus 526 ~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGV 599 (697)
T PRK11747 526 FLPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGL 599 (697)
T ss_pred HHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccc
Confidence 3334444 3455899999999999999998753 333 3445542 4667776666 47788999999999999
Q ss_pred CCCC--CCEEEEccCCCC----h--------------------------hhhHhhhccccCCCCcceEEEEecCc--cHH
Q 008602 478 DVAE--CDLVVNLDLPTD----S--------------------------IHYAHRAGRTGRLGRRGTVVSICEEP--EVF 523 (560)
Q Consensus 478 dip~--v~~VI~~~~p~s----~--------------------------~~y~Qr~GR~gR~g~~g~~~~l~~~~--e~~ 523 (560)
|+|+ +..||...+|.. + ..+.|.+||.-|....--+++++++. ...
T Consensus 600 D~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~ 679 (697)
T PRK11747 600 DLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKR 679 (697)
T ss_pred cCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchh
Confidence 9995 788988776641 1 12478889999985443345555544 233
Q ss_pred HHHHHHHH
Q 008602 524 VVKKMQKQ 531 (560)
Q Consensus 524 ~~~~l~~~ 531 (560)
+-+.+.+.
T Consensus 680 Yg~~~l~s 687 (697)
T PRK11747 680 YGKRLLDA 687 (697)
T ss_pred HHHHHHHh
Confidence 44445444
No 149
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.61 E-value=1.8e-15 Score=117.49 Aligned_cols=81 Identities=42% Similarity=0.724 Sum_probs=76.9
Q ss_pred HHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC
Q 008602 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 428 ~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~ 507 (560)
.+...|+..++.+..+||+|++.+|..+++.|.++...||++|+++++|+|+|.++.||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 008602 508 G 508 (560)
Q Consensus 508 g 508 (560)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 150
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.57 E-value=1.7e-12 Score=128.88 Aligned_cols=313 Identities=13% Similarity=0.131 Sum_probs=211.1
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCC-CCceEE---EEec--------------CCChhHHHHHHHcC--------
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPS-DKKAVQ---QLVG--------------GANRSRQEEALRKN-------- 242 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~-~~~~~~---~~~~--------------~~~~~~~~~~l~~~-------- 242 (560)
-..|+||||+|+|..|..+.+.+-+++... ....-. .-+| .......+..+-.|
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 457999999999999999999988876541 100000 0000 01111222222222
Q ss_pred ----------------CCcEEEeCchHHHHHHHc------CCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCC
Q 008602 243 ----------------KPAIVVGTPGRIAEISAA------GKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSG 300 (560)
Q Consensus 243 ----------------~~~IlI~Tp~~l~~~l~~------~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~ 300 (560)
..||+|++|=-|...+.. ....++++.++|+|.+|. +-+..++.+..+++.++..+.
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~-l~MQNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADV-LLMQNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhH-HHHhhHHHHHHHHHHhccCCC
Confidence 457999999999887663 234578999999999996 556677788888888876554
Q ss_pred CCCCCchhhh-------hhccCceEEEEEeeCChHHHHHHHHcCCCCeEE--eeccccccCCCCCCCCCCCCCCCCCCCC
Q 008602 301 ANPREPKSAL-------AMRAERQTIMVSATVPFSVIRAARSWGHDPLLV--QAKNVIPLESMPATGPGNLSGPMSGSSS 371 (560)
Q Consensus 301 ~~~~~~~~~~-------~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (560)
....-...-. ..+.-+|+|++|+...++...+....+.+..-. .......
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~--------------------- 252 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA--------------------- 252 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc---------------------
Confidence 3221111111 123458999999999999999988855543211 1000000
Q ss_pred CcchhhhcccccCCcccceEEEEech-------hhHHH----HHHHHHH-hcCCCeEEEEEcChhhHHHHHHHHHHCCCc
Q 008602 372 NSNLQAKQADQSLPPALKHYYCVTKL-------QHKVD----TLRRCVH-ALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439 (560)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~~----~l~~~~~-~~~~~~~iif~~~~~~~~~~~~~L~~~~~~ 439 (560)
......+...+.+.+..... ....+ .+.-.+. ....+.++||+++.-+--++..+|++.++.
T Consensus 253 ------~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~s 326 (442)
T PF06862_consen 253 ------SGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENIS 326 (442)
T ss_pred ------ceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCe
Confidence 00001122223333322111 11111 1122222 345688999999999999999999999999
Q ss_pred eeeccCCCCHHHHHHHHHHhhcCCceEEEEecCc--ccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCC------cc
Q 008602 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS--ARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGR------RG 511 (560)
Q Consensus 440 ~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~--~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~------~g 511 (560)
...+|...+..+-.++...|.+|+.+||+.|.-+ -+-..|.++..||+|++|..+.-|...++-.+.... .+
T Consensus 327 F~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~ 406 (442)
T PF06862_consen 327 FVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADA 406 (442)
T ss_pred EEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCc
Confidence 9999999999999999999999999999999865 477889999999999999999988888866655433 57
Q ss_pred eEEEEecCccHHHHHHHH
Q 008602 512 TVVSICEEPEVFVVKKMQ 529 (560)
Q Consensus 512 ~~~~l~~~~e~~~~~~l~ 529 (560)
.|.++|+.-|...++.|.
T Consensus 407 ~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 407 TVTVLYSKYDALRLERIV 424 (442)
T ss_pred eEEEEecHhHHHHHHHHh
Confidence 899999999888877664
No 151
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.53 E-value=5.8e-13 Score=142.48 Aligned_cols=345 Identities=19% Similarity=0.162 Sum_probs=193.3
Q ss_pred HHhCCCCCChHHHHHHHhhhhc--------CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEE
Q 008602 125 LEREGFNVPTEVQSAAIPSILK--------NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVI 196 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~--------~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vli 196 (560)
+.+..-..-+.+|..|++.+.. |--++-.|-||+|||++=...+.... ....|.+..|
T Consensus 401 ~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLs--------------d~~~g~Rfsi 466 (1110)
T TIGR02562 401 FCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALR--------------DDKQGARFAI 466 (1110)
T ss_pred hccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhC--------------CCCCCceEEE
Confidence 3333333567899999998775 22356789999999998666554433 2356778888
Q ss_pred EccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHH---------------------------------------
Q 008602 197 VAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEE--------------------------------------- 237 (560)
Q Consensus 197 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 237 (560)
..-.|.|..|.-+.+++.++-... ...+++|+.-.....+
T Consensus 467 ALGLRTLTLQTGda~r~rL~L~~d-dLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~ 545 (1110)
T TIGR02562 467 ALGLRSLTLQTGHALKTRLNLSDD-DLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTI 545 (1110)
T ss_pred EccccceeccchHHHHHhcCCCcc-ceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccch
Confidence 888888888888888887654332 2445555433222111
Q ss_pred ----HHHc-------CCCcEEEeCchHHHHHHHc---CCccCC----CeeEEEEechhhhhccchHHHHHHHHHHhccCC
Q 008602 238 ----ALRK-------NKPAIVVGTPGRIAEISAA---GKLHTH----GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRS 299 (560)
Q Consensus 238 ----~l~~-------~~~~IlI~Tp~~l~~~l~~---~~~~~~----~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~ 299 (560)
.+.+ -...|+|||+..++..... +...+. .=+.|||||+|. ++......+..++....
T Consensus 546 ~l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHa-YD~~~~~~L~rlL~w~~--- 621 (1110)
T TIGR02562 546 ELLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDD-YEPEDLPALLRLVQLAG--- 621 (1110)
T ss_pred hhhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCcc-CCHHHHHHHHHHHHHHH---
Confidence 0000 0123999999998875421 111111 125899999996 77665666666666432
Q ss_pred CCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHH-c-----------CC--CCeEEeeccccccCCCCCCCCCCCCCC
Q 008602 300 GANPREPKSALAMRAERQTIMVSATVPFSVIRAARS-W-----------GH--DPLLVQAKNVIPLESMPATGPGNLSGP 365 (560)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~-~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (560)
.-+..+++||||+|+........ | .. .+..+...-..... ........
T Consensus 622 -------------~lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~-~~~~~~~~---- 683 (1110)
T TIGR02562 622 -------------LLGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQ-VWQADCNQ---- 683 (1110)
T ss_pred -------------HcCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccC-chhhhhcC----
Confidence 24668999999999876554432 1 11 11111111100000 00000000
Q ss_pred CCCCCC--CcchhhhcccccCCcccceEEEEechh------hHHHHH--------HHHHHhc---C--CCe----EEEEE
Q 008602 366 MSGSSS--NSNLQAKQADQSLPPALKHYYCVTKLQ------HKVDTL--------RRCVHAL---D--AQT----VIAFM 420 (560)
Q Consensus 366 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~k~~~l--------~~~~~~~---~--~~~----~iif~ 420 (560)
...... ............-.+..+......... .....+ ..+...+ . .++ .+|-+
T Consensus 684 ~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~ 763 (1110)
T TIGR02562 684 KSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRV 763 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEE
Confidence 000000 000000000000011122222111111 111112 1111111 1 122 57888
Q ss_pred cChhhHHHHHHHHHHC------CCceeeccCCCCHHHHHHHHHHh----------------------h----cCCceEEE
Q 008602 421 NNTRQLKDAVFKLEAR------GMKAAELHGDLGKLARSTTLKKF----------------------K----NGEVRVLV 468 (560)
Q Consensus 421 ~~~~~~~~~~~~L~~~------~~~~~~lhg~~~~~~r~~v~~~F----------------------~----~g~~~iLv 468 (560)
+++..+-.++..|... .+.+..+|+......|..+.+.. . .+...|+|
T Consensus 764 anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v 843 (1110)
T TIGR02562 764 ANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVL 843 (1110)
T ss_pred cCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEE
Confidence 8899999998888764 24578899998777776655432 1 14678999
Q ss_pred EecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCC
Q 008602 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGR 509 (560)
Q Consensus 469 aT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~ 509 (560)
+|+++|-|+|+ +.+++| .-|.+....+|++||+.|.+.
T Consensus 844 ~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 844 ATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred EeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 99999999999 577666 345678899999999999865
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=2e-12 Score=140.75 Aligned_cols=131 Identities=22% Similarity=0.214 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCc-eeeccCCCCHHHHHHHHHHhhcCCc-eEEEEecCcccCCCC
Q 008602 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK-AAELHGDLGKLARSTTLKKFKNGEV-RVLVTNELSARGLDV 479 (560)
Q Consensus 402 ~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~-~~~lhg~~~~~~r~~v~~~F~~g~~-~iLvaT~~~~~Gidi 479 (560)
..+..++.. .++.++||+++...++.+...+...... ....+|.. .+...++.|..+.- -++|+|..+.+|+|+
T Consensus 469 ~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 469 AYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 334444444 3569999999999999999999876542 34445543 34578888876554 899999999999999
Q ss_pred CC--CCEEEEccCCCC------------------------------hhhhHhhhccccCCCCcceEEEEecCc-c-HHHH
Q 008602 480 AE--CDLVVNLDLPTD------------------------------SIHYAHRAGRTGRLGRRGTVVSICEEP-E-VFVV 525 (560)
Q Consensus 480 p~--v~~VI~~~~p~s------------------------------~~~y~Qr~GR~gR~g~~g~~~~l~~~~-e-~~~~ 525 (560)
|+ +..||....|.- .....|.+||+-|.....-++++++.. . ..+-
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~ 624 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYG 624 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHH
Confidence 95 578888777642 134689999999975544444555443 2 2234
Q ss_pred HHHHHHhCCCc
Q 008602 526 KKMQKQLAVPI 536 (560)
Q Consensus 526 ~~l~~~l~~~~ 536 (560)
..+.+.+....
T Consensus 625 ~~l~~~l~~~~ 635 (654)
T COG1199 625 KLLLDSLPPFP 635 (654)
T ss_pred HHHHHhCCCCc
Confidence 44444444333
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=9.8e-13 Score=140.07 Aligned_cols=125 Identities=13% Similarity=0.117 Sum_probs=97.2
Q ss_pred hhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcc
Q 008602 397 LQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474 (560)
Q Consensus 397 ~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~ 474 (560)
...|..++.+.+.. ..+.|+||-+.++...+.+.+.|...+++..++++.....+-+.+-+.=+ .-.|-|||++++
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAG 687 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcC
Confidence 34455555555443 36899999999999999999999999999888887654444443333322 346889999999
Q ss_pred cCCCCC--------CCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHH
Q 008602 475 RGLDVA--------ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVF 523 (560)
Q Consensus 475 ~Gidip--------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~ 523 (560)
||-||. +==+||--..+.|..--.|-.||+||.|.+|.+-.|++-+|.-
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 999997 3346787888999999999999999999999998888866643
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=3.3e-12 Score=139.13 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=77.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCC-------ceeeccCCCCHHHHHHHHHHhhc----CCceEEEEe--cCcccCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGM-------KAAELHGDLGKLARSTTLKKFKN----GEVRVLVTN--ELSARGLD 478 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~-------~~~~lhg~~~~~~r~~v~~~F~~----g~~~iLvaT--~~~~~Gid 478 (560)
.++.++||+++...++.+...+.+.+. +....-+ -...++..+++.|+. |+-.||+|+ ..+++|||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 468999999999999999998876432 1122212 122578889999964 456799999 88999999
Q ss_pred CCC--CCEEEEccCCC-Ch------------------------------hhhHhhhccccCCCCcceEEEEecC
Q 008602 479 VAE--CDLVVNLDLPT-DS------------------------------IHYAHRAGRTGRLGRRGTVVSICEE 519 (560)
Q Consensus 479 ip~--v~~VI~~~~p~-s~------------------------------~~y~Qr~GR~gR~g~~g~~~~l~~~ 519 (560)
+++ ++.||..++|. ++ ....|.+||+-|....--++++++.
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~ 673 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDK 673 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEeh
Confidence 996 78999898885 21 1236888999998654335555543
No 155
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.51 E-value=4.1e-13 Score=142.82 Aligned_cols=320 Identities=18% Similarity=0.229 Sum_probs=199.4
Q ss_pred ChHHHHHHHhhhhc-CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~-~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
..|+|.+.++.+.+ +.++++++|+|||||.++-++++.. ....+++++.|.-+.+..+++.+
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~-----------------~~~~~~vyi~p~~~i~~~~~~~w 1206 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP-----------------DTIGRAVYIAPLEEIADEQYRDW 1206 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC-----------------ccceEEEEecchHHHHHHHHHHH
Confidence 36788888888776 4779999999999999998888662 44567999999999999999888
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i 291 (560)
.+.++...+..+..+.|........ +..+ +|+|+||+.+..+ + ....+++.|.||.|.+. ...+..+.-|
T Consensus 1207 ~~~f~~~~G~~~~~l~ge~s~~lkl--~~~~--~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~ig-g~~g~v~evi 1276 (1674)
T KOG0951|consen 1207 EKKFSKLLGLRIVKLTGETSLDLKL--LQKG--QVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIG-GVYGAVYEVI 1276 (1674)
T ss_pred HHhhccccCceEEecCCccccchHH--hhhc--ceEEechhHHHHH-h----hhhhcceEeeehhhhhc-ccCCceEEEE
Confidence 8888777666555555554443322 2233 5999999999765 2 56778999999999644 3222222222
Q ss_pred HHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCC
Q 008602 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSS 371 (560)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (560)
+. +. ..+...-...+++.+|..+.+. ..++ +..+..+ +...
T Consensus 1277 ~S-~r----------~ia~q~~k~ir~v~ls~~lana-~d~i---g~s~~~v-----~Nf~------------------- 1317 (1674)
T KOG0951|consen 1277 CS-MR----------YIASQLEKKIRVVALSSSLANA-RDLI---GASSSGV-----FNFS------------------- 1317 (1674)
T ss_pred ee-HH----------HHHHHHHhheeEEEeehhhccc-hhhc---cccccce-----eecC-------------------
Confidence 11 10 1111122456788888776421 1110 0000000 0000
Q ss_pred CcchhhhcccccCCcccceEEEEechhhHHHHH----HHHHH--hcCCCeEEEEEcChhhHHHHHHHHHH----------
Q 008602 372 NSNLQAKQADQSLPPALKHYYCVTKLQHKVDTL----RRCVH--ALDAQTVIAFMNNTRQLKDAVFKLEA---------- 435 (560)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l----~~~~~--~~~~~~~iif~~~~~~~~~~~~~L~~---------- 435 (560)
+......+...+ +.+.+.........+ ...+. ...+.+.+||+++++.+..++..|-.
T Consensus 1318 -----p~~R~~Pl~i~i-~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l 1391 (1674)
T KOG0951|consen 1318 -----PSVRPVPLEIHI-QSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYL 1391 (1674)
T ss_pred -----cccCCCceeEEE-EEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHH
Confidence 000000000001 111111111111111 11111 23578999999999998877644321
Q ss_pred ------------CCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEE-----EccC------CC
Q 008602 436 ------------RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV-----NLDL------PT 492 (560)
Q Consensus 436 ------------~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI-----~~~~------p~ 492 (560)
...+..+-|.+|++.++..+-..|..|.+.|+|...- ..|+-.. .+.|| .||- +.
T Consensus 1392 ~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y 1469 (1674)
T KOG0951|consen 1392 LSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDY 1469 (1674)
T ss_pred HHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeecccccccccC
Confidence 1123334499999999999999999999999999877 8888775 44444 3333 44
Q ss_pred ChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHH
Q 008602 493 DSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQ 529 (560)
Q Consensus 493 s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~ 529 (560)
+.++..|+.|+|.|+ |.|++++...+..+++++.
T Consensus 1470 ~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1470 PIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred chhHHHHHhhhhcCC---ccEEEEecCchHHHHHHhc
Confidence 678899999999885 6899999988877765543
No 156
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.49 E-value=1.3e-13 Score=143.97 Aligned_cols=361 Identities=17% Similarity=0.189 Sum_probs=212.1
Q ss_pred CChHHHHHHHhhhhc----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSILK----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
++.+||...+.++.+ +-+.++..++|-|||.+.+..+...+ . .+...|| -+|+||+-.| ..|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLm-E-----------~K~~~GP-~LvivPlstL-~NW 459 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLM-E-----------HKQMQGP-FLIIVPLSTL-VNW 459 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHH-H-----------HcccCCC-eEEecccccc-CCc
Confidence 678999999988665 35789999999999998666555444 1 2224444 6888999888 458
Q ss_pred HHHHHHHhCCCCCceEEEEecCCC--hhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccC--CCeeEEEEechhhhhccc
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGAN--RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHT--HGCRFLVLDEIDELLSFN 283 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~--~~l~llIiDE~h~l~~~~ 283 (560)
..+|..|.... ....+.|.. .......+..+..+|+++|++.+.. ....+ -++.++||||-|+|-.
T Consensus 460 ~~Ef~kWaPSv----~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKN-- 529 (1157)
T KOG0386|consen 460 SSEFPKWAPSV----QKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKN-- 529 (1157)
T ss_pred hhhccccccce----eeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccc--
Confidence 88888874332 223333322 3334455667899999999998865 11112 2356999999999754
Q ss_pred hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh----HH---------------HHHHHHcCCCCeEEe
Q 008602 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF----SV---------------IRAARSWGHDPLLVQ 344 (560)
Q Consensus 284 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~----~~---------------~~~~~~~~~~~~~~~ 344 (560)
....+...+..- . .....+++++|+.. +. ..|-.+| ..|.--.
T Consensus 530 a~~KLt~~L~t~---y--------------~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWF-N~PFant 591 (1157)
T KOG0386|consen 530 AICKLTDTLNTH---Y--------------RAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWF-NQPFANT 591 (1157)
T ss_pred hhhHHHHHhhcc---c--------------cchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHh-hhhhhhc
Confidence 222332222210 0 11123445555421 11 1111111 0000000
Q ss_pred e-------------------------------------c---------cccccC-CC--CCCCCCCCCCCC-CCC--C--
Q 008602 345 A-------------------------------------K---------NVIPLE-SM--PATGPGNLSGPM-SGS--S-- 370 (560)
Q Consensus 345 ~-------------------------------------~---------~~~~~~-~~--~~~~~~~~~~~~-~~~--~-- 370 (560)
. + ....+. .+ .....+.+.... .+. +
T Consensus 592 Gek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~ 671 (1157)
T KOG0386|consen 592 GEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKP 671 (1157)
T ss_pred CCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchh
Confidence 0 0 000000 00 000000000000 000 0
Q ss_pred -CCcchhhhc--ccccCCccc----ceE---EEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCC
Q 008602 371 -SNSNLQAKQ--ADQSLPPAL----KHY---YCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGM 438 (560)
Q Consensus 371 -~~~~~~~~~--~~~~~~~~~----~~~---~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~ 438 (560)
.+....... ....+...+ ... ..+...+.|.+.|.+++.. ..++.++.||.-..-...+..+|.-.++
T Consensus 672 L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~ 751 (1157)
T KOG0386|consen 672 LFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREY 751 (1157)
T ss_pred hhhHhHHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhh
Confidence 000000000 000000000 000 0122334566666666654 3579999999999999999999998999
Q ss_pred ceeeccCCCCHHHHHHHHHHhhcCC---ceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEE
Q 008602 439 KAAELHGDLGKLARSTTLKKFKNGE---VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVS 515 (560)
Q Consensus 439 ~~~~lhg~~~~~~r~~v~~~F~~g~---~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~ 515 (560)
+...+.|....++|-..++.|..-. +.+|++|...+.|+++..+++||.||..|++..+.|+.-|+.|.|+...+-+
T Consensus 752 kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv 831 (1157)
T KOG0386|consen 752 KYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRV 831 (1157)
T ss_pred heeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheee
Confidence 9999999999999999999997533 4678899999999999999999999999999999999999999998765544
Q ss_pred Ee--c--CccHHHHHHHHHHhCC
Q 008602 516 IC--E--EPEVFVVKKMQKQLAV 534 (560)
Q Consensus 516 l~--~--~~e~~~~~~l~~~l~~ 534 (560)
+. + .-+..++..-..++++
T Consensus 832 ~rl~tv~sveE~il~~a~~Kl~~ 854 (1157)
T KOG0386|consen 832 LRLITVNSVEEKILAEAFYKLDV 854 (1157)
T ss_pred eeeehhhHHHHHHHHHHHHhcCc
Confidence 43 2 2244444443334444
No 157
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.45 E-value=7.1e-12 Score=126.21 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCC-ceEEEEecCcc
Q 008602 398 QHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE-VRVLVTNELSA 474 (560)
Q Consensus 398 ~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~-~~iLvaT~~~~ 474 (560)
..|+..|..++.. ..+.++++|+.-.+-++-+.++|...++....+.|.....+|..++.+|...+ +-+|++|...+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 3455556666654 46789999999999999999999999999999999999999999999998765 45678999999
Q ss_pred cCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcc--eEEEEecCc--cHHHHH
Q 008602 475 RGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRG--TVVSICEEP--EVFVVK 526 (560)
Q Consensus 475 ~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g--~~~~l~~~~--e~~~~~ 526 (560)
-||++..+++||+||..|++..-.|..-||.|.|+.. ++|-++... |.+++.
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~ 1162 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLE 1162 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHH
Confidence 9999999999999999999999999999999998754 467777654 344443
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.39 E-value=3.9e-12 Score=128.27 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=97.9
Q ss_pred cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhh--cC-CceEEEEecCcccCCCCCCCCEEEE
Q 008602 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFK--NG-EVRVLVTNELSARGLDVAECDLVVN 487 (560)
Q Consensus 411 ~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~--~g-~~~iLvaT~~~~~Gidip~v~~VI~ 487 (560)
....+++|......-+.-+...|.+.|.....+||....++|..+++.|. +| ..-.|++-...+-|+++-..+++|.
T Consensus 744 ~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlil 823 (901)
T KOG4439|consen 744 SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLIL 823 (901)
T ss_pred cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEE
Confidence 45688888888888888889999999999999999999999999999996 34 4445566688889999999999999
Q ss_pred ccCCCChhhhHhhhccccCCCCcceEEE--E-ecCccHHHHHHHHH
Q 008602 488 LDLPTDSIHYAHRAGRTGRLGRRGTVVS--I-CEEPEVFVVKKMQK 530 (560)
Q Consensus 488 ~~~p~s~~~y~Qr~GR~gR~g~~g~~~~--l-~~~~e~~~~~~l~~ 530 (560)
+|+.||++--.|.+-|.-|.|++..+++ | |...-...+..+++
T Consensus 824 vDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQd 869 (901)
T KOG4439|consen 824 VDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQD 869 (901)
T ss_pred EecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHH
Confidence 9999999999999999999998776544 2 33333334444443
No 159
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=3.3e-11 Score=117.94 Aligned_cols=380 Identities=17% Similarity=0.156 Sum_probs=227.2
Q ss_pred CCCChHHHHHHHhhhhcCCcEEE-EcCCCchH--HHHHHHHHHhhhC-------CCCcC-CCCCCC-------CCCCCCC
Q 008602 130 FNVPTEVQSAAIPSILKNHDVVI-QSYTGSGK--TLAYLLPILSKVG-------PLKDK-SSNGNG-------ESGKKTD 191 (560)
Q Consensus 130 ~~~~~~~Q~~ai~~i~~~~~~li-~~~TGsGK--T~~~~~~i~~~~~-------~~~~~-~~~~~~-------~~~~~~~ 191 (560)
-.++|+.|.+.+..+.+.+|++. .+..+.|+ +-+|.+-++.++. .++.+ .+...+ ..+.-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 34789999999999999999875 33335566 5567777777752 22222 111111 1223346
Q ss_pred eeEEEEccCHHHHHHHHHHHHHHhCCCCC-c----eEEEEecCCC-----------hhHHHHHHHc--------------
Q 008602 192 IEAVIVAPSRELGMQIVREIKKLLGPSDK-K----AVQQLVGGAN-----------RSRQEEALRK-------------- 241 (560)
Q Consensus 192 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~-~----~~~~~~~~~~-----------~~~~~~~l~~-------------- 241 (560)
++|||+||+|+.|-.+.+.+..++.+... . .-..+.+... .....+.+-.
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999999888443222 1 0111221100 0111111111
Q ss_pred ----------CCCcEEEeCchHHHHHHHcC------CccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCC--
Q 008602 242 ----------NKPAIVVGTPGRIAEISAAG------KLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANP-- 303 (560)
Q Consensus 242 ----------~~~~IlI~Tp~~l~~~l~~~------~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~-- 303 (560)
...||+||+|--|.-++... .-.++++.++|||-+|-|+- ..++.+..|+.++...+...+
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~-QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM-QNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH-hhHHHHHHHHHHhhcCcccccCC
Confidence 35579999999987776621 13457899999999997554 556677778887765443211
Q ss_pred -----CCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhh
Q 008602 304 -----REPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAK 378 (560)
Q Consensus 304 -----~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (560)
+.+...-+.+--+|+++||+--.+....+...++.+..-......... .+...+......
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~---------------~gsi~~v~~~l~ 517 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQS---------------GGSISNVGIPLC 517 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccC---------------CCchhhccchhh
Confidence 112222223345789999998877777766665544221110000000 000000000000
Q ss_pred cccccCCcccceEEEEechhhHHHHHHHHHHh---cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHH
Q 008602 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHA---LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTT 455 (560)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~---~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v 455 (560)
+.-..+. ........+..-+ -....++.. ....-++|+.|+.-+.-++..++++.++....+|.-.+...-.++
T Consensus 518 Qvf~ri~--~~si~~~~D~RFk-yFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRA 594 (698)
T KOG2340|consen 518 QVFQRIE--VKSIIETPDARFK-YFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRA 594 (698)
T ss_pred hhhhhee--ccCcccCchHHHH-HHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHH
Confidence 0000000 0000000000000 011112221 123568999999999999999999998888888888888888888
Q ss_pred HHHhhcCCceEEEEecCc--ccCCCCCCCCEEEEccCCCChhhhHh---hhccccCCC----CcceEEEEecCccHHHHH
Q 008602 456 LKKFKNGEVRVLVTNELS--ARGLDVAECDLVVNLDLPTDSIHYAH---RAGRTGRLG----RRGTVVSICEEPEVFVVK 526 (560)
Q Consensus 456 ~~~F~~g~~~iLvaT~~~--~~Gidip~v~~VI~~~~p~s~~~y~Q---r~GR~gR~g----~~g~~~~l~~~~e~~~~~ 526 (560)
.+-|..|...||+-|.-+ -+-.+|.+|..||+|.+|.++.-|.. +.+|+.-.| ....|.++|+.-|.-.++
T Consensus 595 R~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le 674 (698)
T KOG2340|consen 595 RELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLE 674 (698)
T ss_pred HHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHH
Confidence 999999999999999865 47899999999999999999976654 445543222 224688899888876655
Q ss_pred HH
Q 008602 527 KM 528 (560)
Q Consensus 527 ~l 528 (560)
.+
T Consensus 675 ~i 676 (698)
T KOG2340|consen 675 NI 676 (698)
T ss_pred Hh
Confidence 54
No 160
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.31 E-value=2.4e-12 Score=106.46 Aligned_cols=138 Identities=18% Similarity=0.196 Sum_probs=80.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHh-hhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEE
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILS-KVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 224 (560)
+|+-.++...+|+|||.-.+.-++. .+ ..+.++|||.|||.++..+++.++. .+.. +.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i----------------~~~~rvLvL~PTRvva~em~~aL~~----~~~~-~~ 61 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI----------------KRRLRVLVLAPTRVVAEEMYEALKG----LPVR-FH 61 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH----------------HTT--EEEEESSHHHHHHHHHHTTT----SSEE-EE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH----------------HccCeEEEecccHHHHHHHHHHHhc----CCcc-cC
Confidence 4556789999999999975555444 44 5678899999999999888877753 2321 11
Q ss_pred EEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCC
Q 008602 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304 (560)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~ 304 (560)
...... -..+..-|-++|++.+.+.+.+ .....++++||+||||- .|..-... ...+....
T Consensus 62 --t~~~~~------~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~-~Dp~sIA~-rg~l~~~~-------- 122 (148)
T PF07652_consen 62 --TNARMR------THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHF-TDPTSIAA-RGYLRELA-------- 122 (148)
T ss_dssp --STTSS----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHH-HHHHHHHH--------
T ss_pred --ceeeec------cccCCCcccccccHHHHHHhcC-cccccCccEEEEecccc-CCHHHHhh-heeHHHhh--------
Confidence 111100 1113335999999999887665 55578899999999996 44322211 22222221
Q ss_pred CchhhhhhccCceEEEEEeeCChHHH
Q 008602 305 EPKSALAMRAERQTIMVSATVPFSVI 330 (560)
Q Consensus 305 ~~~~~~~~~~~~~~l~~SAT~~~~~~ 330 (560)
......+|++|||+|-...
T Consensus 123 -------~~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 123 -------ESGEAKVIFMTATPPGSED 141 (148)
T ss_dssp -------HTTS-EEEEEESS-TT---
T ss_pred -------hccCeeEEEEeCCCCCCCC
Confidence 1234689999999986543
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.29 E-value=1.5e-10 Score=131.25 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=104.4
Q ss_pred hHHHHHHHHH-Hh--cCCC--eEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcC--CceEEEEec
Q 008602 399 HKVDTLRRCV-HA--LDAQ--TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNG--EVRVLVTNE 471 (560)
Q Consensus 399 ~k~~~l~~~~-~~--~~~~--~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g--~~~iLvaT~ 471 (560)
.|...+.+++ .. ..+. ++++|++....+.-+...++..++....++|.++.++|...++.|.++ ..-+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5666666666 22 3455 899999999999999999999998899999999999999999999986 456667788
Q ss_pred CcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcce--EEEEecCc
Q 008602 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGT--VVSICEEP 520 (560)
Q Consensus 472 ~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~--~~~l~~~~ 520 (560)
..+.|++...+++||+||+.++++...|...|+.|.|++.. +|-++...
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 99999999999999999999999999999999999988765 45555544
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.27 E-value=9.5e-10 Score=115.30 Aligned_cols=315 Identities=14% Similarity=0.125 Sum_probs=178.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEe
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~ 227 (560)
.-.+|.+|+|||||.+...++-..+. ..+..+++++-++.|+.+.+.+|+...- ... +.+..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~---------------~~~~~VLvVShRrSL~~sL~~rf~~~~l--~gF-v~Y~d 111 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK---------------NPDKSVLVVSHRRSLTKSLAERFKKAGL--SGF-VNYLD 111 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc---------------CCCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccc-eeeec
Confidence 45689999999999987777666541 3456799999999999999999976411 111 11111
Q ss_pred cCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccch------HHHHHHHHHHhccCCCC
Q 008602 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF------REAMHRIVEHVGRRSGA 301 (560)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~------~~~l~~i~~~~~~~~~~ 301 (560)
.+ .. .+.....+-+++..+.|.++.. ..+++.++|||||+-..+..-+ ...+..++..+-
T Consensus 112 ~~-~~-----~i~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI----- 177 (824)
T PF02399_consen 112 SD-DY-----IIDGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI----- 177 (824)
T ss_pred cc-cc-----cccccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH-----
Confidence 11 10 0111123577777777766432 2456789999999987655422 122222222221
Q ss_pred CCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeE-Eeeccccc----------cCCCCCCCCCCCCCCCCCCC
Q 008602 302 NPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL-VQAKNVIP----------LESMPATGPGNLSGPMSGSS 370 (560)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 370 (560)
+....+|++-|++...+.+|...+..+.-+ +..+.... +..+..........+.....
T Consensus 178 -----------~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~ 246 (824)
T PF02399_consen 178 -----------RNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENA 246 (824)
T ss_pred -----------HhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCccccc
Confidence 345589999999999999999987544332 22222111 00000000000000000000
Q ss_pred CCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh-cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCH
Q 008602 371 SNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGK 449 (560)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~ 449 (560)
... .....-+......... .........+... ..+..+-||+.+....+.+++.......++..++|.-+.
T Consensus 247 ~~~-----~~~~~~~~~~~~~~~~---~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~ 318 (824)
T PF02399_consen 247 DTS-----PTPKHSPDPTATAAIS---NDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKL 318 (824)
T ss_pred ccC-----CCcCCCCccccccccc---cchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCc
Confidence 000 0000000000001111 1111222233333 347788899999999999999988888889999887554
Q ss_pred HHHHHHHHHhhcCCceEEEEecCcccCCCCCCC--CEEEEccCC--C--ChhhhHhhhccccCCCCcceEEEEecCc
Q 008602 450 LARSTTLKKFKNGEVRVLVTNELSARGLDVAEC--DLVVNLDLP--T--DSIHYAHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 450 ~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v--~~VI~~~~p--~--s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
. .+. . =++++|++-|+++.-|+++... +-|.-|=-| . +..+..|++||+-.. .....|++++..
T Consensus 319 ~---dv~-~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 319 E---DVE-S--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred c---ccc-c--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 4 222 2 2678999999999999998743 434444223 2 344679999999444 446677776544
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.19 E-value=1.1e-09 Score=115.50 Aligned_cols=393 Identities=14% Similarity=0.144 Sum_probs=204.0
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|. .|+..| .+-.+.-...-+.-+-||=|||+++.+|+.-.. -.|..|.++...--||.--+
T Consensus 78 g~-~~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylna----------------L~gkgVhvVTvNdYLA~RDa 138 (822)
T COG0653 78 GM-RHFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNA----------------LAGKGVHVVTVNDYLARRDA 138 (822)
T ss_pred CC-ChhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHh----------------cCCCCcEEeeehHHhhhhCH
Confidence 55 566666 555555556689999999999999999997765 34566899999999999888
Q ss_pred HHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHH-HHHHcCC------ccCCCeeEEEEechhhhh-
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIA-EISAAGK------LHTHGCRFLVLDEIDELL- 280 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~-~~l~~~~------~~~~~l~llIiDE~h~l~- 280 (560)
+++..++...+.. ++....+.......... .+||..+|...|- +.+..+. .....+.+-|+||+|-++
T Consensus 139 e~m~~l~~~LGls-vG~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILI 214 (822)
T COG0653 139 EWMGPLYEFLGLS-VGVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILI 214 (822)
T ss_pred HHHHHHHHHcCCc-eeeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheee
Confidence 8888887766544 77777777665555554 5689999987762 2222211 123457899999999643
Q ss_pred c---------c------chHHHHHHHHHHhccCCCCCCCCch-----hhhhhccCceEEEEEeeCChHH-------HHHH
Q 008602 281 S---------F------NFREAMHRIVEHVGRRSGANPREPK-----SALAMRAERQTIMVSATVPFSV-------IRAA 333 (560)
Q Consensus 281 ~---------~------~~~~~l~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~SAT~~~~~-------~~~~ 333 (560)
+ . .....+..+...+.......-+... .......--+.+.+..-..++. ...+
T Consensus 215 DEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~al 294 (822)
T COG0653 215 DEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQAL 294 (822)
T ss_pred eccccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHH
Confidence 1 1 2344455555444332211000000 0000000000000111000000 0000
Q ss_pred H---HcCCC-------Ce-EEe---eccc-------------------------------------cccCCC--CCCCCC
Q 008602 334 R---SWGHD-------PL-LVQ---AKNV-------------------------------------IPLESM--PATGPG 360 (560)
Q Consensus 334 ~---~~~~~-------~~-~~~---~~~~-------------------------------------~~~~~~--~~~~~~ 360 (560)
+ .+.+| .. ++. +++. +.+... ..+...
T Consensus 295 rA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa 374 (822)
T COG0653 295 RAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTA 374 (822)
T ss_pred HHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcc
Confidence 0 11111 11 000 0000 000000 011111
Q ss_pred CCCCC-CCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCC
Q 008602 361 NLSGP-MSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARG 437 (560)
Q Consensus 361 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~ 437 (560)
..... ..........................+ ......|..++...+.. ..++|+||-..+++..+.+.+.|.+.+
T Consensus 375 ~te~~EF~~iY~l~vv~iPTnrp~~R~D~~D~v-y~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~ 453 (822)
T COG0653 375 DTEEEEFDVIYGLDVVVIPTNRPIIRLDEPDLV-YKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAG 453 (822)
T ss_pred hhhhhhhhhccCCceeeccCCCcccCCCCcccc-ccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcC
Confidence 00000 000000000000000000000011111 12233444444444332 468999999999999999999999999
Q ss_pred CceeeccCCCCHHHHHHHHHHhhcCCc-eEEEEecCcccCCCCCC-CC----------EEEEccCCCChhhhHhhhcccc
Q 008602 438 MKAAELHGDLGKLARSTTLKKFKNGEV-RVLVTNELSARGLDVAE-CD----------LVVNLDLPTDSIHYAHRAGRTG 505 (560)
Q Consensus 438 ~~~~~lhg~~~~~~r~~v~~~F~~g~~-~iLvaT~~~~~Gidip~-v~----------~VI~~~~p~s~~~y~Qr~GR~g 505 (560)
++..++...-...+-+.+.. .|+. .|-|||+++++|-||.= -+ +||--.-..|..--.|..||+|
T Consensus 454 i~h~VLNAk~h~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsG 530 (822)
T COG0653 454 IPHNVLNAKNHAREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAG 530 (822)
T ss_pred CCceeeccccHHHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccc
Confidence 98877776644333333332 3433 57799999999999862 21 2332222333344468899999
Q ss_pred CCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCceee
Q 008602 506 RLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVI 548 (560)
Q Consensus 506 R~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~ 548 (560)
|.|.+|.+-.+++-+|.-+-...-+.+...++.+...+++.+.
T Consensus 531 RQGDpG~S~F~lSleD~L~r~F~~d~~~~~~~~l~~~~~e~i~ 573 (822)
T COG0653 531 RQGDPGSSRFYLSLEDDLMRRFASDRLPALMDKLGLKEGEAIE 573 (822)
T ss_pred cCCCcchhhhhhhhHHHHHHHhcchhhHHHHHhhcCCccCccc
Confidence 9999999888877666444333334444444444444444443
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.17 E-value=1.3e-10 Score=114.27 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=86.1
Q ss_pred HHHHHHhhhh-------------cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 136 VQSAAIPSIL-------------KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 136 ~Q~~ai~~i~-------------~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
+|.+++..++ ..+.++++.++|+|||.+++..+........ ......+||+||. .
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~-----------~~~~~~~LIv~P~-~ 68 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFP-----------QRGEKKTLIVVPS-S 68 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCT-----------TSS-S-EEEEE-T-T
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccc-----------cccccceeEeecc-c
Confidence 4677776653 2367899999999999997777653321100 0111249999999 7
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHH---HcCCccCCCeeEEEEechhhh
Q 008602 203 LGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEIS---AAGKLHTHGCRFLVLDEIDEL 279 (560)
Q Consensus 203 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l---~~~~~~~~~l~llIiDE~h~l 279 (560)
+..||..++.+++..... .+..+ .+.........-.....+++|+|++.+.... ....+..-++++||+||+|.+
T Consensus 69 l~~~W~~E~~~~~~~~~~-~v~~~-~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 69 LLSQWKEEIEKWFDPDSL-RVIIY-DGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp THHHHHHHHHHHSGT-TS--EEEE-SSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGG
T ss_pred hhhhhhhhhccccccccc-ccccc-ccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccc
Confidence 779999999999754333 23333 3333111111111235679999999998100 000111134899999999986
Q ss_pred hccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh
Q 008602 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF 327 (560)
Q Consensus 280 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 327 (560)
-+. .......+..+ .....+++||||..
T Consensus 147 k~~--~s~~~~~l~~l------------------~~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 147 KNK--DSKRYKALRKL------------------RARYRWLLSGTPIQ 174 (299)
T ss_dssp TTT--TSHHHHHHHCC------------------CECEEEEE-SS-SS
T ss_pred ccc--ccccccccccc------------------ccceEEeecccccc
Confidence 332 12222222222 24578899999853
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.08 E-value=8e-09 Score=107.74 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHC----------------------CCceeeccCCCCHHHHH
Q 008602 398 QHKVDTLRRCVHAL--DAQTVIAFMNNTRQLKDAVFKLEAR----------------------GMKAAELHGDLGKLARS 453 (560)
Q Consensus 398 ~~k~~~l~~~~~~~--~~~~~iif~~~~~~~~~~~~~L~~~----------------------~~~~~~lhg~~~~~~r~ 453 (560)
..|+..|.+++..+ -+.++|||..+...+.-+..+|... |.....+.|..+..+|.
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 34555666666653 4789999999999999888888641 23467789999999999
Q ss_pred HHHHHhhcC----CceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEE
Q 008602 454 TTLKKFKNG----EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516 (560)
Q Consensus 454 ~v~~~F~~g----~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l 516 (560)
...+.|.+- -.-.||+|...+-||++-.++.||+||..||+..-.|.+=|+-|.|+..-||++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999999753 245889999999999999999999999999999999999999999987655553
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.04 E-value=1.8e-08 Score=112.16 Aligned_cols=326 Identities=14% Similarity=0.122 Sum_probs=168.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEe
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~ 227 (560)
+..+|.--+|||||++..-.+-..+ . ....+.++|++-++.|-.|+.+.|..+...... ..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~-~-------------~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~--~~--- 334 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLL-E-------------LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN--DP--- 334 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHH-h-------------ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhh--cc---
Confidence 4689999999999998544443333 1 144677999999999999999999987432221 11
Q ss_pred cCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc--cCCCeeEEEEechhhhhccch-HHHHHHHHHHhccCCCCCCC
Q 008602 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL--HTHGCRFLVLDEIDELLSFNF-REAMHRIVEHVGRRSGANPR 304 (560)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~--~~~~l~llIiDE~h~l~~~~~-~~~l~~i~~~~~~~~~~~~~ 304 (560)
...+.......+..+.-.|+|+|-+.|......... .-.+==++|+|||||. ..+. ...++..+
T Consensus 335 ~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q~G~~~~~~~~~~------------ 401 (962)
T COG0610 335 KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-QYGELAKLLKKAL------------ 401 (962)
T ss_pred cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc-cccHHHHHHHHHh------------
Confidence 345555666666656557999999999887655411 1122237899999993 3333 22223332
Q ss_pred CchhhhhhccCceEEEEEeeCChHHHHH--HHHcCCCCeEEee------ccccccCCCCCCCCCCCCCCCCCCCCCcc--
Q 008602 305 EPKSALAMRAERQTIMVSATVPFSVIRA--ARSWGHDPLLVQA------KNVIPLESMPATGPGNLSGPMSGSSSNSN-- 374 (560)
Q Consensus 305 ~~~~~~~~~~~~~~l~~SAT~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 374 (560)
++...++||+||...-... ...|+...+.... +.+.++..... ..+............
T Consensus 402 ---------~~a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~---~~~~~~~~~~~~~~~~~ 469 (962)
T COG0610 402 ---------KKAIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENR---VELELIEESIKEEAEEL 469 (962)
T ss_pred ---------ccceEEEeeCCccccccccchhhhhcceeEEEecchhhccCceeeEEEeec---ccccccccchhhhhhhh
Confidence 4468999999996333222 2223222222111 11111110000 000000000000000
Q ss_pred -hhhhcc----cccCCcccceE-EEEechhhHHH---HHHHHHH--hcCCCeEEEEEcChhhHHHHHHHHHHC-------
Q 008602 375 -LQAKQA----DQSLPPALKHY-YCVTKLQHKVD---TLRRCVH--ALDAQTVIAFMNNTRQLKDAVFKLEAR------- 436 (560)
Q Consensus 375 -~~~~~~----~~~~~~~~~~~-~~~~~~~~k~~---~l~~~~~--~~~~~~~iif~~~~~~~~~~~~~L~~~------- 436 (560)
...... ...+....... +.......... .+...+. ...+.++.+.+.++..+..+.......
T Consensus 470 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~ 549 (962)
T COG0610 470 DERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSK 549 (962)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhh
Confidence 000000 00000000000 00000011111 1111111 234567777787777333333222211
Q ss_pred C--Cc-e---eeccCCC---------CHHHHHHHHHHh--hcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHh
Q 008602 437 G--MK-A---AELHGDL---------GKLARSTTLKKF--KNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499 (560)
Q Consensus 437 ~--~~-~---~~lhg~~---------~~~~r~~v~~~F--~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Q 499 (560)
. .. + ....+.+ ....+.....+| .+...++||.++++-+|.|-|.++++. +|-|.-....+|
T Consensus 550 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~Q 628 (962)
T COG0610 550 ESLEGAIKDYNTEFETDFDKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQ 628 (962)
T ss_pred hhhhhHHHHHHhhcccchhhhhhhHHHHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHH
Confidence 0 00 0 0001111 122233444443 467899999999999999999887665 777777788899
Q ss_pred hhccccCC--C--CcceEEEEec
Q 008602 500 RAGRTGRL--G--RRGTVVSICE 518 (560)
Q Consensus 500 r~GR~gR~--g--~~g~~~~l~~ 518 (560)
.+.|+-|. + ..|.++.|..
T Consensus 629 AisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 629 AISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHHHhccCCCCCCCCcEEEECcc
Confidence 99999996 2 3366666655
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.03 E-value=3.1e-09 Score=102.67 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=58.0
Q ss_pred CCCCCChHHHHHHHh----hhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 128 EGFNVPTEVQSAAIP----SILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~----~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
++| +|+|.|.+.+. .+..+.++++.+|||+|||++++.|++..+..... ...+.++++.++|..+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~----------~~~~~kvi~~t~T~~~ 73 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE----------RIQKIKLIYLSRTVSE 73 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc----------cccccceeEEeccHHH
Confidence 577 67999999554 45567899999999999999999999876522110 0023479999999999
Q ss_pred HHHHHHHHHHH
Q 008602 204 GMQIVREIKKL 214 (560)
Q Consensus 204 a~Q~~~~~~~~ 214 (560)
..|...++++.
T Consensus 74 ~~q~i~~l~~~ 84 (289)
T smart00488 74 IEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHhc
Confidence 88887777664
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.03 E-value=3.1e-09 Score=102.67 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=58.0
Q ss_pred CCCCCChHHHHHHHh----hhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 128 EGFNVPTEVQSAAIP----SILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~----~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
++| +|+|.|.+.+. .+..+.++++.+|||+|||++++.|++..+..... ...+.++++.++|..+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~----------~~~~~kvi~~t~T~~~ 73 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE----------RIQKIKLIYLSRTVSE 73 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc----------cccccceeEEeccHHH
Confidence 577 67999999554 45567899999999999999999999876522110 0023479999999999
Q ss_pred HHHHHHHHHHH
Q 008602 204 GMQIVREIKKL 214 (560)
Q Consensus 204 a~Q~~~~~~~~ 214 (560)
..|...++++.
T Consensus 74 ~~q~i~~l~~~ 84 (289)
T smart00489 74 IEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHhc
Confidence 88887777664
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.75 E-value=1.8e-07 Score=87.93 Aligned_cols=131 Identities=22% Similarity=0.269 Sum_probs=94.1
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
..|+ .|++.|.-+.=.+..|+ |+...||=|||+++.+|++... -.|..|-|++.+..||..
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~A----------------L~G~~V~vvT~NdyLA~R 133 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNA----------------LQGKGVHVVTSNDYLAKR 133 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHH----------------TTSS-EEEEESSHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHH----------------HhcCCcEEEeccHHHhhc
Confidence 4466 89999999887776664 9999999999999998887776 456779999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHH-HHHcCCc------cCCCeeEEEEechhhh
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKL------HTHGCRFLVLDEIDEL 279 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~-~l~~~~~------~~~~l~llIiDE~h~l 279 (560)
=++++..++...+.. ++...++.+........ ..||+++|...+.- .++.... ....+.++||||+|.+
T Consensus 134 D~~~~~~~y~~LGls-v~~~~~~~~~~~r~~~Y---~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 134 DAEEMRPFYEFLGLS-VGIITSDMSSEERREAY---AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHHHHHHHHHTT---EEEEETTTEHHHHHHHH---HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred cHHHHHHHHHHhhhc-cccCccccCHHHHHHHH---hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 999999888766554 77777766644333332 34699999998854 4443221 1367899999999965
Q ss_pred h
Q 008602 280 L 280 (560)
Q Consensus 280 ~ 280 (560)
+
T Consensus 210 L 210 (266)
T PF07517_consen 210 L 210 (266)
T ss_dssp T
T ss_pred E
Confidence 4
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.66 E-value=1.5e-07 Score=102.08 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=57.1
Q ss_pred CceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC--CCcc-------e-EEEEecCccHHHHHHHHHHh
Q 008602 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL--GRRG-------T-VVSICEEPEVFVVKKMQKQL 532 (560)
Q Consensus 463 ~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~--g~~g-------~-~~~l~~~~e~~~~~~l~~~l 532 (560)
..+.+++-+.+.+|.|.|++-++.-+....|...-.|.+||..|. .+.| . --.+++..+..+...|++.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999888999999999999995 1222 2 22345677777888887776
Q ss_pred CC
Q 008602 533 AV 534 (560)
Q Consensus 533 ~~ 534 (560)
+-
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 43
No 171
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.47 E-value=1.3e-06 Score=93.58 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCC--ceEEEEecC
Q 008602 397 LQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE--VRVLVTNEL 472 (560)
Q Consensus 397 ~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~--~~iLvaT~~ 472 (560)
.+.|+..|.-++.. ..+.++|||..-..-++.+..+|+..|+-...+.|..+.++|...+++|..+. +.++++|..
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 45677777777665 46899999999999999999999999999999999999999999999998765 467889999
Q ss_pred cccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCc--ceEEEEecCc
Q 008602 473 SARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRR--GTVVSICEEP 520 (560)
Q Consensus 473 ~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~--g~~~~l~~~~ 520 (560)
.+.|||+-++++||+||..||+.--.|.--|+.|.|+. -..|-|++..
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999999999997666666555555543 3467788765
No 172
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.46 E-value=5.3e-06 Score=86.93 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=59.0
Q ss_pred cCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC--CCcce-----------EEEEecCccHHHHHH
Q 008602 461 NGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL--GRRGT-----------VVSICEEPEVFVVKK 527 (560)
Q Consensus 461 ~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~--g~~g~-----------~~~l~~~~e~~~~~~ 527 (560)
+...+.+++-.++-+|.|-|+|=+++-+....|..+=.|.+||..|. .+.|. -..+++..+..++..
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~ 560 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKA 560 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHH
Confidence 35588999999999999999999999999999999999999999994 22332 334667777778887
Q ss_pred HHHHhC
Q 008602 528 MQKQLA 533 (560)
Q Consensus 528 l~~~l~ 533 (560)
+++.+.
T Consensus 561 LqkEI~ 566 (985)
T COG3587 561 LQKEIN 566 (985)
T ss_pred HHHHHH
Confidence 776644
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.45 E-value=4.1e-06 Score=91.05 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=42.5
Q ss_pred cEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHh
Q 008602 245 AIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295 (560)
Q Consensus 245 ~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~ 295 (560)
.|+++||..|..-+-.+.++++.+..|||||||++.+..-...+-+++..-
T Consensus 9 gi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~ 59 (814)
T TIGR00596 9 GIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQK 59 (814)
T ss_pred CEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHh
Confidence 399999999988888888999999999999999987766666666666543
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.45 E-value=1.2e-06 Score=82.70 Aligned_cols=73 Identities=27% Similarity=0.322 Sum_probs=52.3
Q ss_pred ChHHHHHHHhhhhcCCc-EEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKNHD-VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~~~-~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+.+.|..|+..++.... .+|.||.|+|||.+....+...+.... ......+.++|+++|+..-+.++.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~--------~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK--------SRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH---------------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh--------hhhhhccccceeecCCchhHHHHHHHH
Confidence 56889999999999988 999999999999775555544421000 001255778999999999999999998
Q ss_pred HH
Q 008602 212 KK 213 (560)
Q Consensus 212 ~~ 213 (560)
.+
T Consensus 74 ~~ 75 (236)
T PF13086_consen 74 KK 75 (236)
T ss_dssp HC
T ss_pred Hh
Confidence 87
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.44 E-value=4e-08 Score=104.29 Aligned_cols=171 Identities=21% Similarity=0.240 Sum_probs=116.6
Q ss_pred hHHHHHHHhhhhc-CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 134 TEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 134 ~~~Q~~ai~~i~~-~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
.|.|...+-.+.. +.+.++-+|||+|||.+|.++++..... ..+.++++++|-.+|+..-.+...
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~--------------~p~~kvvyIap~kalvker~~Dw~ 994 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY--------------YPGSKVVYIAPDKALVKERSDDWS 994 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc--------------CCCccEEEEcCCchhhcccccchh
Confidence 4556655555444 4688999999999999999999988732 445789999999999888877777
Q ss_pred HHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC--CccCCCeeEEEEechhhhhccchHHHHHH
Q 008602 213 KLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG--KLHTHGCRFLVLDEIDELLSFNFREAMHR 290 (560)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~--~~~~~~l~llIiDE~h~l~~~~~~~~l~~ 290 (560)
..+... +..+.-..|..... ...+. .++|+|+||+++..+.+++ .-.+.+++++|+||.|. .+.+.++.++.
T Consensus 995 ~r~~~~-g~k~ie~tgd~~pd--~~~v~--~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl-lg~~rgPVle~ 1068 (1230)
T KOG0952|consen 995 KRDELP-GIKVIELTGDVTPD--VKAVR--EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL-LGEDRGPVLEV 1068 (1230)
T ss_pred hhcccC-CceeEeccCccCCC--hhhee--cCceEEcccccccCccccccchhhhccccceeeccccc-ccCCCcceEEE
Confidence 765444 33344455544443 22222 4579999999998877633 34678899999999997 66677777776
Q ss_pred HHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHH
Q 008602 291 IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARS 335 (560)
Q Consensus 291 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~ 335 (560)
+....+..+...+ ..++.+++|--+. +...++.+
T Consensus 1069 ivsr~n~~s~~t~----------~~vr~~glsta~~-na~dla~w 1102 (1230)
T KOG0952|consen 1069 IVSRMNYISSQTE----------EPVRYLGLSTALA-NANDLADW 1102 (1230)
T ss_pred EeeccccCccccC----------cchhhhhHhhhhh-ccHHHHHH
Confidence 6665554333332 4456666665442 33444444
No 176
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.43 E-value=5.2e-05 Score=78.50 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=88.2
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHCCCc------------------eeeccCCCCHHHHHHHHHHhhcC---CceEEEEec
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEARGMK------------------AAELHGDLGKLARSTTLKKFKNG---EVRVLVTNE 471 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~~~~------------------~~~lhg~~~~~~r~~v~~~F~~g---~~~iLvaT~ 471 (560)
+.++|||..+...++.+.+.|.+..++ ...+.|..+..+|++.+++|.+- ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 578999999999999888888765322 23567888999999999999753 235788999
Q ss_pred CcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEe
Q 008602 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSIC 517 (560)
Q Consensus 472 ~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~ 517 (560)
...-||++-.++-+|.||..|++..-.|.+-|+-|-|++..||++-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999999999999999999999999999999999887776653
No 177
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.35 E-value=8.7e-07 Score=94.85 Aligned_cols=131 Identities=17% Similarity=0.243 Sum_probs=87.2
Q ss_pred ChHHHHHHHhhhhc----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 133 PTEVQSAAIPSILK----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
++.||...++++.. +-+.|+..++|.|||++.+. ++.++. ...+.-.--||+|||-.+ ..|.
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtIS-llAhLA------------CeegnWGPHLIVVpTsvi-LnWE 681 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTIS-LLAHLA------------CEEGNWGPHLIVVPTSVI-LNWE 681 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHH-HHHHHH------------hcccCCCCceEEeechhh-hhhh
Confidence 68899999998664 56899999999999998544 444441 112332335888999776 6699
Q ss_pred HHHHHHhCCCCCceEEEEecCC-ChhHHHHHHH-cCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhcc
Q 008602 209 REIKKLLGPSDKKAVQQLVGGA-NRSRQEEALR-KNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~ 282 (560)
-+|++|+.+.. +-..+|.. +.+.....+. -+..+|.|+++..+..-+. .+.-+++.|+|+||+|++-++
T Consensus 682 MElKRwcPglK---ILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnf 752 (1958)
T KOG0391|consen 682 MELKRWCPGLK---ILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNF 752 (1958)
T ss_pred HHHhhhCCcce---EeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcch
Confidence 99999976653 33445432 2222233332 2456799999888765333 223356889999999997654
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.23 E-value=2.1e-06 Score=77.37 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=41.7
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
.+.++.|..+++++....-+++.|+.|||||+.++..++..+.. +.-.+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~--------------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE--------------GEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT--------------TS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh--------------CCCcEEEEEecCCCC
Confidence 35689999999999988889999999999999999999988732 233468888887653
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.22 E-value=4.3e-06 Score=74.04 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCC--ceeeccCCCCHHHHHHHHHHhhcCCceEEEEec--CcccCCCCCC--CCEE
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGM--KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE--LSARGLDVAE--CDLV 485 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~--~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~--~~~~Gidip~--v~~V 485 (560)
.++.++||+++...++.+...+..... ....+.. +..+...+++.|++++-.||+|+. .+.+|+|+|+ +..|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 469999999999999999999876531 1222222 356788999999999999999998 9999999995 8889
Q ss_pred EEccCCCC----h--------------------------hhhHhhhccccCCCCcceEEEEecC
Q 008602 486 VNLDLPTD----S--------------------------IHYAHRAGRTGRLGRRGTVVSICEE 519 (560)
Q Consensus 486 I~~~~p~s----~--------------------------~~y~Qr~GR~gR~g~~g~~~~l~~~ 519 (560)
|...+|.. + ....|.+||+-|....--+++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 98888741 1 1237888999998654444455544
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.20 E-value=3.1e-06 Score=77.06 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=45.3
Q ss_pred CChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR 209 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~ 209 (560)
++++.|.+|+..++.+ +-.++.|+.|+|||.+ +..+...+. ..|.++++++||...+..+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~---------------~~g~~v~~~apT~~Aa~~L~~ 64 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALE---------------AAGKRVIGLAPTNKAAKELRE 64 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHH---------------HTT--EEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHH---------------hCCCeEEEECCcHHHHHHHHH
Confidence 3688999999999754 3577899999999986 444555541 346789999999888777655
Q ss_pred H
Q 008602 210 E 210 (560)
Q Consensus 210 ~ 210 (560)
.
T Consensus 65 ~ 65 (196)
T PF13604_consen 65 K 65 (196)
T ss_dssp H
T ss_pred h
Confidence 5
No 181
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.20 E-value=7.7e-06 Score=82.01 Aligned_cols=108 Identities=13% Similarity=0.170 Sum_probs=68.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEec
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG 228 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~ 228 (560)
-++|.|..|||||++++..+..... ...+..++++++...|...+...+....... .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~--------------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~--~------- 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQN--------------SEEGKKVLYLCGNHPLRNKLREQLAKKYNPK--L------- 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhc--------------cccCCceEEEEecchHHHHHHHHHhhhcccc--h-------
Confidence 4789999999999997776666510 1446679999999999998888887653000 0
Q ss_pred CCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhcc-------chHHHHHHHHHH
Q 008602 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF-------NFREAMHRIVEH 294 (560)
Q Consensus 229 ~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~-------~~~~~l~~i~~~ 294 (560)
....+..+..+..............++|||||||++... .....+..+++.
T Consensus 60 ---------------~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 ---------------KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---------------hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 012223333332211112234567899999999998773 224566666554
No 182
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.04 E-value=3.2e-05 Score=82.37 Aligned_cols=117 Identities=16% Similarity=0.223 Sum_probs=96.5
Q ss_pred hhhHHHHHHHHHHhc--CC-CeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCC-ce-EEEEec
Q 008602 397 LQHKVDTLRRCVHAL--DA-QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE-VR-VLVTNE 471 (560)
Q Consensus 397 ~~~k~~~l~~~~~~~--~~-~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~-~~-iLvaT~ 471 (560)
...++..+...+... .. .+++||+..+.-+.-+...|...++....+.|.|+...|.+.+..|..+. .. .+++..
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slk 599 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLK 599 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHH
Confidence 345555555555431 11 49999999999999999999888999999999999999999999998543 33 446778
Q ss_pred CcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceE
Q 008602 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTV 513 (560)
Q Consensus 472 ~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~ 513 (560)
+...|+++-.+++|+..|+-+|+..--|.+-|+.|.|+.-.+
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccccee
Confidence 899999999999999999999999999999999999876544
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.03 E-value=4.7e-05 Score=71.92 Aligned_cols=181 Identities=18% Similarity=0.160 Sum_probs=108.7
Q ss_pred CCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhc----------CCcEEEEcCCCchHHHHHHHHHHhhhCC
Q 008602 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK----------NHDVVIQSYTGSGKTLAYLLPILSKVGP 174 (560)
Q Consensus 105 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~----------~~~~li~~~TGsGKT~~~~~~i~~~~~~ 174 (560)
.+.|...|. +.+++.++. .| .+...|.+++-...+ +...++-..||.||--+..-.|++...
T Consensus 17 v~~P~~~y~-~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l- 88 (303)
T PF13872_consen 17 VAPPDPTYR-LHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL- 88 (303)
T ss_pred CCCCCCCcc-cCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-
Confidence 344444444 356665432 22 347788888765542 246788889999999987777777762
Q ss_pred CCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH
Q 008602 175 LKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI 254 (560)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l 254 (560)
...+++|.++.+..|-....+.++.+-.. ... +..+..- ..... ..+ .-.|+++|+..|
T Consensus 89 --------------~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~-v~~l~~~-~~~~~-~~~---~~GvlF~TYs~L 147 (303)
T PF13872_consen 89 --------------RGRKRAVWVSVSNDLKYDAERDLRDIGAD-NIP-VHPLNKF-KYGDI-IRL---KEGVLFSTYSTL 147 (303)
T ss_pred --------------cCCCceEEEECChhhhhHHHHHHHHhCCC-ccc-ceechhh-ccCcC-CCC---CCCccchhHHHH
Confidence 22346999999999999988888876332 222 2221110 00000 111 235999999999
Q ss_pred HHHHHcCC---ccC--------CC-eeEEEEechhhhhccch--------HHHHHHHHHHhccCCCCCCCCchhhhhhcc
Q 008602 255 AEISAAGK---LHT--------HG-CRFLVLDEIDELLSFNF--------REAMHRIVEHVGRRSGANPREPKSALAMRA 314 (560)
Q Consensus 255 ~~~l~~~~---~~~--------~~-l~llIiDE~h~l~~~~~--------~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 314 (560)
........ ..+ .+ =++||+||||.+.+..- ...+..+-+.+ +
T Consensus 148 ~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L------------------P 209 (303)
T PF13872_consen 148 ISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL------------------P 209 (303)
T ss_pred HhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC------------------C
Confidence 77543211 110 11 25999999998665422 12333444444 5
Q ss_pred CceEEEEEeeCChHHHHH
Q 008602 315 ERQTIMVSATVPFSVIRA 332 (560)
Q Consensus 315 ~~~~l~~SAT~~~~~~~~ 332 (560)
+.+++..|||-..+..++
T Consensus 210 ~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 210 NARVVYASATGASEPRNM 227 (303)
T ss_pred CCcEEEecccccCCCcee
Confidence 667999999986544443
No 184
>PF13245 AAA_19: Part of AAA domain
Probab=98.02 E-value=1.4e-05 Score=59.90 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+.-++|.|+.|||||...+..+...+.. ....+.++++++||+..+.++.+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~------------~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAA------------RADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH------------hcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4446669999999998877777666510 0112677999999999999888887
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.00 E-value=1.4e-05 Score=81.08 Aligned_cols=65 Identities=26% Similarity=0.282 Sum_probs=55.5
Q ss_pred CChHHHHHHHhhhhcCC-cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNH-DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~-~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
.+.+-|..|+......+ -.+|.||+|+|||.+....+.+.+ ..+.+|||++||.+-+..+.++
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv----------------k~~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV----------------KQKKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH----------------HcCCeEEEEcCchHHHHHHHHH
Confidence 56788999999988874 467899999999999888888877 5578899999999999998886
Q ss_pred HH
Q 008602 211 IK 212 (560)
Q Consensus 211 ~~ 212 (560)
+.
T Consensus 249 l~ 250 (649)
T KOG1803|consen 249 LT 250 (649)
T ss_pred hc
Confidence 43
No 186
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.97 E-value=9.4e-05 Score=67.39 Aligned_cols=128 Identities=18% Similarity=0.271 Sum_probs=82.7
Q ss_pred CcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhc---CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCC
Q 008602 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK---NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187 (560)
Q Consensus 111 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~---~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~ 187 (560)
.|+....+..++=.+ ..++ -.++.|.+....+.+ +.+.+..+-+|.|||.+ +.|++..+..
T Consensus 4 ~w~p~~~P~wLl~E~-e~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA------------- 67 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEI-ESNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA------------- 67 (229)
T ss_pred CCCchhChHHHHHHH-HcCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc-------------
Confidence 366665555555333 3345 789999999988876 57899999999999998 5666665532
Q ss_pred CCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEE--EecCCChhHH--------HHHHHcCCCcEEEeCchHHHHH
Q 008602 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ--LVGGANRSRQ--------EEALRKNKPAIVVGTPGRIAEI 257 (560)
Q Consensus 188 ~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~l~~~~~~IlI~Tp~~l~~~ 257 (560)
+...-+.++||. .|..|.++.+...+++.....+.. |......+.. .+...+.. .|+++||+.+.++
T Consensus 68 -dg~~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~-gill~~PEhilSf 144 (229)
T PF12340_consen 68 -DGSRLVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSG-GILLATPEHILSF 144 (229)
T ss_pred -CCCcEEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcC-CEEEeChHHHHHH
Confidence 223456677774 788999999998877554433322 2222222111 11222222 4999999998774
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.92 E-value=0.00033 Score=65.18 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=38.4
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
++...+..|..++.++.++..+++.|++|+|||+.+...++..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45567899999999999988899999999999999888888665
No 188
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.90 E-value=4.1e-05 Score=80.86 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=69.1
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHCC-------CceeeccCCCCHHHHHHHHHHhhc--------CCceEEEEecCcccCC
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEARG-------MKAAELHGDLGKLARSTTLKKFKN--------GEVRVLVTNELSARGL 477 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~~-------~~~~~lhg~~~~~~r~~v~~~F~~--------g~~~iLvaT~~~~~Gi 477 (560)
...+++|+++..-.+++...+...+ ++-.. ..--+..+-.+++.+|.+ |-.-+.||---+++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~-vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLV-VEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCce-eccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 3459999999998888866665432 22222 222244455666777753 2234456667789999
Q ss_pred CCCC--CCEEEEccCCCC--------------------------------------hhhhHhhhccccCCCCcceEEEEe
Q 008602 478 DVAE--CDLVVNLDLPTD--------------------------------------SIHYAHRAGRTGRLGRRGTVVSIC 517 (560)
Q Consensus 478 dip~--v~~VI~~~~p~s--------------------------------------~~~y~Qr~GR~gR~g~~g~~~~l~ 517 (560)
|..+ .+.||..++|.- .....|.+||+-|..+.=.+++++
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~ 719 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILC 719 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEe
Confidence 9974 678887777630 123578889999986665566677
Q ss_pred cCc
Q 008602 518 EEP 520 (560)
Q Consensus 518 ~~~ 520 (560)
+..
T Consensus 720 D~R 722 (945)
T KOG1132|consen 720 DDR 722 (945)
T ss_pred ech
Confidence 644
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.78 E-value=0.00024 Score=77.57 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=50.0
Q ss_pred HhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCC--eeEEEEccCHHH
Q 008602 126 EREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD--IEAVIVAPSREL 203 (560)
Q Consensus 126 ~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~vlil~Pt~~L 203 (560)
...++ .+++.|.+|+..+..++..+|.|+.|+|||.+. ..++..+. ..+ ..+++++||---
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~---------------~~~~~~~v~l~ApTg~A 380 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAE---------------ELGGLLPVGLAAPTGRA 380 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHH---------------HcCCCceEEEEeCchHH
Confidence 34566 789999999999999999999999999999873 44444441 112 568899999777
Q ss_pred HHHHH
Q 008602 204 GMQIV 208 (560)
Q Consensus 204 a~Q~~ 208 (560)
|..+.
T Consensus 381 A~~L~ 385 (720)
T TIGR01448 381 AKRLG 385 (720)
T ss_pred HHHHH
Confidence 66443
No 190
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.67 E-value=0.00079 Score=56.91 Aligned_cols=61 Identities=23% Similarity=0.134 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCC
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGP 217 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~ 217 (560)
+..++|.|++|+|||......+-........ ......+.+-+|...-...++..+...++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 64 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEI----------KNHPDVIYVNCPSSRTPRDFAQEILEALGL 64 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHH----------CCCEEEEEEEHHHHSSHHHHHHHHHHHHT-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhc----------cCCCcEEEEEeCCCCCHHHHHHHHHHHhCc
Confidence 4568999999999999866665543200000 002233455555555456666666665543
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.64 E-value=0.0011 Score=70.59 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=51.4
Q ss_pred ChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
..++|..|+...+.++-.+|.|++|+|||.+....+.... .. ......++++++||---|..+.+.+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~-~~-----------~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI-QL-----------ADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh-----------cCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 3589999999999999999999999999987433332222 10 01123568999999988888877776
Q ss_pred HH
Q 008602 213 KL 214 (560)
Q Consensus 213 ~~ 214 (560)
..
T Consensus 221 ~~ 222 (615)
T PRK10875 221 KA 222 (615)
T ss_pred hh
Confidence 54
No 192
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.59 E-value=0.0011 Score=72.91 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=48.0
Q ss_pred CCCCCChHHHHHHHhhhhcC-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
.++ .+++.|..|+..++.+ +-++|.|+.|+|||.+ +..+...+ ...|..+++++||--.|..
T Consensus 349 ~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~---------------~~~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 349 QHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAW---------------EAAGYRVIGAALSGKAAEG 411 (744)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHH---------------HhCCCeEEEEeCcHHHHHH
Confidence 344 6899999999998874 6779999999999987 44454444 1346779999999766555
Q ss_pred HH
Q 008602 207 IV 208 (560)
Q Consensus 207 ~~ 208 (560)
+.
T Consensus 412 L~ 413 (744)
T TIGR02768 412 LQ 413 (744)
T ss_pred HH
Confidence 43
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.57 E-value=0.00056 Score=72.60 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=49.6
Q ss_pred hHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 134 ~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
.++|..|+..++.++-.+|.|+.|+|||.+....+....... +...+.++++++||---|..+.+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~-----------~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQS-----------PKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhc-----------cccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 379999999999999999999999999997443332221000 001135699999998887777766655
Q ss_pred H
Q 008602 214 L 214 (560)
Q Consensus 214 ~ 214 (560)
.
T Consensus 216 ~ 216 (586)
T TIGR01447 216 A 216 (586)
T ss_pred h
Confidence 3
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.50 E-value=0.0011 Score=73.90 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=49.5
Q ss_pred HhCCCCCChHHHHHHHhhhhcCC-cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 126 EREGFNVPTEVQSAAIPSILKNH-DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 126 ~~~~~~~~~~~Q~~ai~~i~~~~-~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
...|+ .+++-|.+|+..++.+. -++|.|..|+|||++ +.++...+ ...|.+|+.++||-.-|
T Consensus 341 ~~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~---------------e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 341 EARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW---------------EAAGYEVRGAALSGIAA 403 (988)
T ss_pred HhcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH---------------HHcCCeEEEecCcHHHH
Confidence 34566 78999999999999864 478999999999987 55555544 13467899999997665
Q ss_pred HHH
Q 008602 205 MQI 207 (560)
Q Consensus 205 ~Q~ 207 (560)
..+
T Consensus 404 ~~L 406 (988)
T PRK13889 404 ENL 406 (988)
T ss_pred HHH
Confidence 444
No 195
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.43 E-value=0.0019 Score=72.58 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=53.4
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHhhhhc-CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEE
Q 008602 117 LPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAV 195 (560)
Q Consensus 117 l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~-~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vl 195 (560)
+++..+......++ .+++-|..|+..+.. ++-.+|.|+.|+|||.+ +.++...+ ...|.+|+
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~---------------e~~G~~V~ 429 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAW---------------EAAGYRVV 429 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHH---------------HHcCCeEE
Confidence 34444444444455 789999999998864 56789999999999987 45555554 13467899
Q ss_pred EEccCHHHHHHH
Q 008602 196 IVAPSRELGMQI 207 (560)
Q Consensus 196 il~Pt~~La~Q~ 207 (560)
.++||---|..+
T Consensus 430 g~ApTgkAA~~L 441 (1102)
T PRK13826 430 GGALAGKAAEGL 441 (1102)
T ss_pred EEcCcHHHHHHH
Confidence 999996665544
No 196
>PRK14974 cell division protein FtsY; Provisional
Probab=97.41 E-value=0.0018 Score=63.63 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=38.9
Q ss_pred CeeEEEEechhhhh-ccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcC
Q 008602 267 GCRFLVLDEIDELL-SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG 337 (560)
Q Consensus 267 ~l~llIiDE~h~l~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 337 (560)
+.++|+||.+.++. +......++.+.+.+. +...++.++||...+....++.|.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~-----------------pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTK-----------------PDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhC-----------------CceEEEeeccccchhHHHHHHHHH
Confidence 45799999999864 3456677777765542 566789999998777776666553
No 197
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.38 E-value=0.00061 Score=63.46 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=69.6
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
...|.+||++..-.=|..+.+.++.+-+.. ..+.-.|---....++..-+.++...|.||||+++..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~-~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKD-CKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCC-chHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 456889999999888888888887763221 1112223333467778888888888999999999999999999999999
Q ss_pred eEEEEechhh
Q 008602 269 RFLVLDEIDE 278 (560)
Q Consensus 269 ~llIiDE~h~ 278 (560)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998774
No 198
>PRK04296 thymidine kinase; Provisional
Probab=97.35 E-value=0.0005 Score=62.26 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=28.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 199 (560)
.-.+++|++|+|||..++..+.... ..+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~----------------~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE----------------ERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH----------------HcCCeEEEEec
Confidence 3468999999999998888877765 44677888866
No 199
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.34 E-value=0.00051 Score=67.92 Aligned_cols=138 Identities=18% Similarity=0.155 Sum_probs=81.8
Q ss_pred ChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
+++-|.+++.. ....++|.|..|||||.+.+.-+...+... .....++|++++|+..|..+.+++.
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~------------~~~~~~Il~lTft~~aa~e~~~ri~ 66 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG------------GVPPERILVLTFTNAAAQEMRERIR 66 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS------------SSTGGGEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc------------cCChHHheecccCHHHHHHHHHHHH
Confidence 47889999998 666899999999999999877766665221 1334669999999999999999998
Q ss_pred HHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHH-HHHcCCccC-CCeeEEEEechhhhhccchHHHHHH
Q 008602 213 KLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHT-HGCRFLVLDEIDELLSFNFREAMHR 290 (560)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~-~l~~~~~~~-~~l~llIiDE~h~l~~~~~~~~l~~ 290 (560)
..+........ ..............+.|+|-..+.. ++....... -.-.+-++|+.... .......+..
T Consensus 67 ~~l~~~~~~~~--------~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 137 (315)
T PF00580_consen 67 ELLEEEQQESS--------DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEEQE-ILIQRELFKE 137 (315)
T ss_dssp HHHHHCCHCCT--------T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHHHH-HCCHHHHHHH
T ss_pred HhcCccccccc--------ccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchhcc-cccchhhhhH
Confidence 87543321100 0001111222223588888887755 333221111 11246777777731 1223344444
Q ss_pred HHH
Q 008602 291 IVE 293 (560)
Q Consensus 291 i~~ 293 (560)
++.
T Consensus 138 ~~~ 140 (315)
T PF00580_consen 138 ILE 140 (315)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 200
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.32 E-value=0.00082 Score=67.60 Aligned_cols=121 Identities=16% Similarity=0.286 Sum_probs=73.6
Q ss_pred ChHHHHHHHhhh------hcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 133 PTEVQSAAIPSI------LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 133 ~~~~Q~~ai~~i------~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
+++.|+.+++.+ .++..+.+.|+-|+|||..+ ..+...+ +..+..+++++||-.-|..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~---------------~~~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYL---------------RSRGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHh---------------ccccceEEEecchHHHHHh
Confidence 568899998888 66788999999999999873 4444444 1345679999999877665
Q ss_pred H--HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccch
Q 008602 207 I--VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284 (560)
Q Consensus 207 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~ 284 (560)
+ -..+-.+|+- +. +.... ... .+... ......+.++++|||||+- |.+...
T Consensus 66 i~~G~T~hs~f~i-~~-------~~~~~-----------~~~---~~~~~----~~~~~~l~~~~~lIiDEis-m~~~~~ 118 (364)
T PF05970_consen 66 IPGGRTIHSFFGI-PI-------NNNEK-----------SQC---KISKN----SRLRERLRKADVLIIDEIS-MVSADM 118 (364)
T ss_pred ccCCcchHHhcCc-cc-------ccccc-----------ccc---ccccc----chhhhhhhhheeeeccccc-chhHHH
Confidence 5 2233333221 10 00000 000 10000 0112246778999999999 566666
Q ss_pred HHHHHHHHHHhc
Q 008602 285 REAMHRIVEHVG 296 (560)
Q Consensus 285 ~~~l~~i~~~~~ 296 (560)
...+...++.+.
T Consensus 119 l~~i~~~lr~i~ 130 (364)
T PF05970_consen 119 LDAIDRRLRDIR 130 (364)
T ss_pred HHHHHHhhhhhh
Confidence 677766666554
No 201
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.31 E-value=0.0022 Score=54.70 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=45.9
Q ss_pred HHHHHHHHHHCCC------ceeeccCCCCHHHHHHHHHHhhcCC-ceEEEEecCcccCCCCCC--CCEEEEccCCC
Q 008602 426 LKDAVFKLEARGM------KAAELHGDLGKLARSTTLKKFKNGE-VRVLVTNELSARGLDVAE--CDLVVNLDLPT 492 (560)
Q Consensus 426 ~~~~~~~L~~~~~------~~~~lhg~~~~~~r~~v~~~F~~g~-~~iLvaT~~~~~Gidip~--v~~VI~~~~p~ 492 (560)
++.+...+...+. ....+..+.+..+...+++.|++.. ..||+++.-+.+|+|+|+ ++.||....|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444555544432 2233444455656788999998654 379999988999999996 67888777663
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.25 E-value=0.002 Score=55.01 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=58.9
Q ss_pred HHHHHHHHHHCCC---ceeeccCCCCHHHHHHHHHHhhcCCc---eEEEEecC--cccCCCCCC--CCEEEEccCCCC--
Q 008602 426 LKDAVFKLEARGM---KAAELHGDLGKLARSTTLKKFKNGEV---RVLVTNEL--SARGLDVAE--CDLVVNLDLPTD-- 493 (560)
Q Consensus 426 ~~~~~~~L~~~~~---~~~~lhg~~~~~~r~~v~~~F~~g~~---~iLvaT~~--~~~Gidip~--v~~VI~~~~p~s-- 493 (560)
++.++..+++.+. ...++..+....+...+++.|++..- .||+++.- +.+|||+|+ ++.||....|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4455556655432 12223323333455788889987544 69998877 999999996 678888877741
Q ss_pred --h---------------------------hhhHhhhccccCCCCcceEEEEec
Q 008602 494 --S---------------------------IHYAHRAGRTGRLGRRGTVVSICE 518 (560)
Q Consensus 494 --~---------------------------~~y~Qr~GR~gR~g~~g~~~~l~~ 518 (560)
+ ....|.+||+-|....--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 224788899999865433455544
No 203
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.24 E-value=0.00079 Score=72.46 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=55.7
Q ss_pred CChHHHHHHHhhhhcC-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
.+.+.|..|+..++.. ...+|.||+|+|||.+..-.+...+ ..|.+|++++||..-+.++.+.
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~----------------~~g~~VLv~a~sn~Avd~l~e~ 220 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV----------------KRGLRVLVTAPSNIAVDNLLER 220 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH----------------HcCCCEEEEcCcHHHHHHHHHH
Confidence 5689999999998876 6788999999999988766666655 3456899999999999999998
Q ss_pred HHH
Q 008602 211 IKK 213 (560)
Q Consensus 211 ~~~ 213 (560)
+..
T Consensus 221 l~~ 223 (637)
T TIGR00376 221 LAL 223 (637)
T ss_pred HHh
Confidence 876
No 204
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.22 E-value=0.0032 Score=57.12 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=73.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEc--cCHHHHHHHHHHHHHHhCCCCCceEEEE
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA--PSRELGMQIVREIKKLLGPSDKKAVQQL 226 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~--Pt~~La~Q~~~~~~~~~~~~~~~~~~~~ 226 (560)
.++++||||+|||.+..-.+..... . +.++.+++ ..|.=|.++.+.+.+.++- .+...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~---------------~-~~~v~lis~D~~R~ga~eQL~~~a~~l~v----p~~~~ 62 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKL---------------K-GKKVALISADTYRIGAVEQLKTYAEILGV----PFYVA 62 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH---------------T-T--EEEEEESTSSTHHHHHHHHHHHHHTE----EEEES
T ss_pred EEEEECCCCCchHhHHHHHHHHHhh---------------c-cccceeecCCCCCccHHHHHHHHHHHhcc----ccchh
Confidence 3688999999999997766666541 1 44454444 4566677777777776431 11111
Q ss_pred ecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhh-ccchHHHHHHHHHHhccCCCCCCCC
Q 008602 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL-SFNFREAMHRIVEHVGRRSGANPRE 305 (560)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~-~~~~~~~l~~i~~~~~~~~~~~~~~ 305 (560)
....+...... +.+. ....++.++|+||-+-+.. +......++++++.+.
T Consensus 63 ~~~~~~~~~~~------------------~~l~--~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~--------- 113 (196)
T PF00448_consen 63 RTESDPAEIAR------------------EALE--KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALN--------- 113 (196)
T ss_dssp STTSCHHHHHH------------------HHHH--HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS---------
T ss_pred hcchhhHHHHH------------------HHHH--HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcC---------
Confidence 11111111111 1111 1122346899999987633 2345666777776662
Q ss_pred chhhhhhccCceEEEEEeeCChHHHHHHHHc
Q 008602 306 PKSALAMRAERQTIMVSATVPFSVIRAARSW 336 (560)
Q Consensus 306 ~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 336 (560)
+..-++.+|||...+.......+
T Consensus 114 --------~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 114 --------PDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp --------SSEEEEEEEGGGGGHHHHHHHHH
T ss_pred --------CccceEEEecccChHHHHHHHHH
Confidence 55678999999987765554443
No 205
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.22 E-value=0.0015 Score=62.72 Aligned_cols=65 Identities=25% Similarity=0.268 Sum_probs=49.4
Q ss_pred hCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
-+|+..-...|.-|++.++.. .-+.+.|.-|||||+-++.+.+...... +.-.++||.=|+..+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~-------------~~y~KiiVtRp~vpvG 289 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER-------------KRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH-------------hhhceEEEecCCcCcc
Confidence 347766778899999999986 3467899999999999999988877432 2334578877876654
No 206
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.20 E-value=0.005 Score=52.79 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
+..+++.|++|+|||..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5789999999999997644433
No 207
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0059 Score=61.29 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=18.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
..++++||||+|||++..-.+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999876555443
No 208
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.11 E-value=0.00083 Score=68.96 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
+...++.++..-|..|+.++++..-.||.||+|+|||.+....+++.+ +..+..|||++|+..-+
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~---------------~~~~~~VLvcApSNiAV 467 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLA---------------RQHAGPVLVCAPSNIAV 467 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHH---------------HhcCCceEEEcccchhH
Confidence 444566778999999999999999999999999999998766666665 24566799999999999
Q ss_pred HHHHHHHHHH
Q 008602 205 MQIVREIKKL 214 (560)
Q Consensus 205 ~Q~~~~~~~~ 214 (560)
+|+++.+.+-
T Consensus 468 DqLaeKIh~t 477 (935)
T KOG1802|consen 468 DQLAEKIHKT 477 (935)
T ss_pred HHHHHHHHhc
Confidence 9999988763
No 209
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.09 E-value=0.0025 Score=68.49 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=88.6
Q ss_pred ccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCC-cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCC
Q 008602 103 ESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNH-DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN 181 (560)
Q Consensus 103 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~-~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~ 181 (560)
+..|+.........+.|.+.+. -+..+...|++|+..++..+ ..+|.|=+|+|||......+-..+
T Consensus 644 d~~pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~--------- 710 (1100)
T KOG1805|consen 644 DLKPPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV--------- 710 (1100)
T ss_pred hcCCchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH---------
Confidence 3445555555555666666553 23367889999998877764 578999999999997555443333
Q ss_pred CCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHH----------------cCCCc
Q 008602 182 GNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALR----------------KNKPA 245 (560)
Q Consensus 182 ~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------~~~~~ 245 (560)
-.|++||..+=|-.-+..+.-.++.. ... +..+-.+....+..+.+. -+.+.
T Consensus 711 -------~~gkkVLLtsyThsAVDNILiKL~~~----~i~-~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~ 778 (1100)
T KOG1805|consen 711 -------ALGKKVLLTSYTHSAVDNILIKLKGF----GIY-ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTS 778 (1100)
T ss_pred -------HcCCeEEEEehhhHHHHHHHHHHhcc----Ccc-eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCc
Confidence 34677999998877777766555543 111 111111111111111111 13456
Q ss_pred EEEeCchHHHHHHHcCCccCCCeeEEEEechhhhh
Q 008602 246 IVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 246 IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~ 280 (560)
||.+|---+.+.+ +..+.+++.|||||-.+.
T Consensus 779 IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 779 IVACTCLGINHPL----FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred EEEEEccCCCchh----hhccccCEEEEccccccc
Confidence 8888854443322 223458999999999754
No 210
>PRK06526 transposase; Provisional
Probab=97.08 E-value=0.0028 Score=59.98 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=24.6
Q ss_pred HhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 141 IPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 141 i~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+.+..+.+++++||+|+|||..+.......+
T Consensus 92 ~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 92 LDFVTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CchhhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 34455678999999999999998666555554
No 211
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.012 Score=58.44 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=19.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+.++++|+||+|||+.....+....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4678999999999998766665443
No 212
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.82 E-value=0.024 Score=49.66 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=26.4
Q ss_pred EEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
++|+|++|+|||..+...+.... ..+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~----------------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA----------------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH----------------hcCCEEEEEECCcch
Confidence 68999999999998766665544 234557777665443
No 213
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.81 E-value=0.0022 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..+++.||+|+|||..+...+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc
Confidence 457899999999999985544433
No 214
>PRK08181 transposase; Validated
Probab=96.80 E-value=0.0075 Score=57.46 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=26.5
Q ss_pred hHHHHHHHh----hhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 134 TEVQSAAIP----SILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 134 ~~~Q~~ai~----~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+.|..++. .+..+.+++++||+|+|||..+...+...+
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 345554442 345678999999999999987655444444
No 215
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.76 E-value=0.01 Score=64.44 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=55.4
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
..+++.|.+|+-.- ..+++|.|..|||||.+.+.-+...+.. ....+.++++++.|+..|..+.++
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~------------~~~~~~~IL~ltft~~AA~em~eR 260 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLAR------------GQAQPEQILLLAFGRQAAEEMDER 260 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHh------------CCCCHHHeEEEeccHHHHHHHHHH
Confidence 37899999998643 3468999999999999976666554421 112346799999999999999999
Q ss_pred HHHHhC
Q 008602 211 IKKLLG 216 (560)
Q Consensus 211 ~~~~~~ 216 (560)
+...++
T Consensus 261 L~~~lg 266 (684)
T PRK11054 261 IRERLG 266 (684)
T ss_pred HHHhcC
Confidence 988764
No 216
>PRK06893 DNA replication initiation factor; Validated
Probab=96.72 E-value=0.01 Score=55.54 Aligned_cols=48 Identities=10% Similarity=0.287 Sum_probs=30.1
Q ss_pred CCeeEEEEechhhhhcc-chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHH
Q 008602 266 HGCRFLVLDEIDELLSF-NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSV 329 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~ 329 (560)
.+.++|||||+|.+.+. .+...+..+++.... .+.+++++|++.++..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~----------------~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE----------------QGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH----------------cCCcEEEEeCCCChHH
Confidence 35689999999986533 344455566655421 2345677788765543
No 217
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.71 E-value=0.012 Score=53.19 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=36.6
Q ss_pred EEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
++|.|++|+|||..++..+...+ ..|..+++++. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~----------------~~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL----------------ARGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH----------------HCCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999999888888776 44566887764 45667777776554
No 218
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.70 E-value=0.0047 Score=68.28 Aligned_cols=160 Identities=18% Similarity=0.082 Sum_probs=91.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCC---CCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceE
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN---GNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 223 (560)
|++++..-..|.|||..-+...+............ .. +......+-+||++|...| .||..++.+..... ..+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e-~~n~~~tgaTLII~P~aIl-~QW~~EI~kH~~~~--lKv 449 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKE-GENLVETGATLIICPNAIL-MQWFEEIHKHISSL--LKV 449 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhc-ccceeecCceEEECcHHHH-HHHHHHHHHhcccc--ceE
Confidence 57789999999999998776666553222211000 11 1112234558999998665 99999999886654 223
Q ss_pred EEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc--------------cCC----Ce--eEEEEechhhhhccc
Q 008602 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL--------------HTH----GC--RFLVLDEIDELLSFN 283 (560)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~--------------~~~----~l--~llIiDE~h~l~~~~ 283 (560)
. +|-|.....-.....--.+|||++|+..|..-+..... ... .+ =-|++|||+- +..
T Consensus 450 ~-~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM-ves- 526 (1394)
T KOG0298|consen 450 L-LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM-VES- 526 (1394)
T ss_pred E-EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh-hcc-
Confidence 2 33332211111111112468999999999875433211 111 01 1389999994 554
Q ss_pred hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHH
Q 008602 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIR 331 (560)
Q Consensus 284 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~ 331 (560)
......++..++ +....-+.|+||...+..
T Consensus 527 ssS~~a~M~~rL------------------~~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 527 SSSAAAEMVRRL------------------HAINRWCVTGTPIQKIDD 556 (1394)
T ss_pred hHHHHHHHHHHh------------------hhhceeeecCCchhhhhh
Confidence 334444454444 344678889998655433
No 219
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.69 E-value=0.0056 Score=66.77 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=55.4
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.+++-|.+|+... ...++|.|..|||||.+...-+...+... .-...++|+++.|+..|..+.+++
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~------------~v~p~~IL~lTFT~kAA~em~~Rl 67 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC------------GYQARHIAAVTFTNKAAREMKERV 67 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc------------CCCHHHeeeEechHHHHHHHHHHH
Confidence 4689999999763 45789999999999999777776666210 122456999999999999999999
Q ss_pred HHHhC
Q 008602 212 KKLLG 216 (560)
Q Consensus 212 ~~~~~ 216 (560)
...++
T Consensus 68 ~~~l~ 72 (672)
T PRK10919 68 AQTLG 72 (672)
T ss_pred HHHhC
Confidence 88754
No 220
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.59 E-value=0.0093 Score=56.41 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=58.2
Q ss_pred HHHHHhhcCCceEEEEecCcccCCCCCC--------CCEEEEccCCCChhhhHhhhccccCCCCc-ceEEEEecCc---c
Q 008602 454 TTLKKFKNGEVRVLVTNELSARGLDVAE--------CDLVVNLDLPTDSIHYAHRAGRTGRLGRR-GTVVSICEEP---E 521 (560)
Q Consensus 454 ~v~~~F~~g~~~iLvaT~~~~~Gidip~--------v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~-g~~~~l~~~~---e 521 (560)
...+.|.+|+.+|+|.|+.+++||-+.+ -++-|.+.+|||....+|..||+.|.|+. +-.|.++..+ |
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567899999999999999999998753 23557889999999999999999999873 3345444322 5
Q ss_pred HHHHHHHHH
Q 008602 522 VFVVKKMQK 530 (560)
Q Consensus 522 ~~~~~~l~~ 530 (560)
.++...+.+
T Consensus 132 ~Rfas~va~ 140 (278)
T PF13871_consen 132 RRFASTVAR 140 (278)
T ss_pred HHHHHHHHH
Confidence 555544443
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.57 E-value=0.029 Score=52.62 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=18.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
..++++|++|+|||..+...+...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999998755444433
No 222
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.51 E-value=0.0052 Score=54.11 Aligned_cols=124 Identities=23% Similarity=0.256 Sum_probs=55.1
Q ss_pred EEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCC
Q 008602 151 VIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA 230 (560)
Q Consensus 151 li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~ 230 (560)
+++|+-|-|||.+.-+.+...+. ....+++|.+|+.+-+..+++.+...+...+... ...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~---------------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-----~~~ 60 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ---------------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-----EKK 60 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------------------EEEE-SS--S-HHHHHCC-------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------------hcCceEEEecCCHHHHHHHHHHHHhhcccccccc-----ccc
Confidence 57899999999886666655541 2225799999999988887776655443322111 000
Q ss_pred ChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhh
Q 008602 231 NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSAL 310 (560)
Q Consensus 231 ~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 310 (560)
........+......|-+..|+.+.. .-...+++|||||=- +. ...+..++.
T Consensus 61 ~~~~~~~~~~~~~~~i~f~~Pd~l~~-------~~~~~DlliVDEAAa-Ip---~p~L~~ll~----------------- 112 (177)
T PF05127_consen 61 KRIGQIIKLRFNKQRIEFVAPDELLA-------EKPQADLLIVDEAAA-IP---LPLLKQLLR----------------- 112 (177)
T ss_dssp ------------CCC--B--HHHHCC-------T----SCEEECTGGG-S----HHHHHHHHC-----------------
T ss_pred cccccccccccccceEEEECCHHHHh-------CcCCCCEEEEechhc-CC---HHHHHHHHh-----------------
Confidence 00001111112234577777777643 112358999999986 33 344455532
Q ss_pred hhccCceEEEEEeeCC
Q 008602 311 AMRAERQTIMVSATVP 326 (560)
Q Consensus 311 ~~~~~~~~l~~SAT~~ 326 (560)
....++||.|..
T Consensus 113 ----~~~~vv~stTi~ 124 (177)
T PF05127_consen 113 ----RFPRVVFSTTIH 124 (177)
T ss_dssp ----CSSEEEEEEEBS
T ss_pred ----hCCEEEEEeecc
Confidence 335678888874
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.51 E-value=0.022 Score=53.56 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
..++++||+|+|||..+...+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~ 66 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAAC 66 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999998754333
No 224
>PRK08727 hypothetical protein; Validated
Probab=96.46 E-value=0.017 Score=54.25 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.2
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
..++++|++|+|||..+...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~ 62 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALC 62 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 358999999999997644333
No 225
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.0025 Score=64.91 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=59.0
Q ss_pred EEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCC
Q 008602 152 IQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN 231 (560)
Q Consensus 152 i~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (560)
..+.||||||++....|+...- +.-...|+.|............|..-....-...-...+++..
T Consensus 2 f~matgsgkt~~ma~lil~~y~---------------kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~ 66 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYK---------------KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDEN 66 (812)
T ss_pred cccccCCChhhHHHHHHHHHHH---------------hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCce
Confidence 4589999999998888887761 2224467777766655554444332111000000000111111
Q ss_pred hhHH-HHHH--HcCCCcEEEeCchHHHHHHHcCC---c---cCCCeeE-EEEechhhhhc
Q 008602 232 RSRQ-EEAL--RKNKPAIVVGTPGRIAEISAAGK---L---HTHGCRF-LVLDEIDELLS 281 (560)
Q Consensus 232 ~~~~-~~~l--~~~~~~IlI~Tp~~l~~~l~~~~---~---~~~~l~l-lIiDE~h~l~~ 281 (560)
..-. ...+ .+....|+++|.+.|...+.... + ++++..+ ++-||+||+-.
T Consensus 67 i~ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 67 IEIKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred eeeeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 0000 0000 12234699999999877544322 2 3445554 45699999653
No 226
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.023 Score=56.64 Aligned_cols=26 Identities=23% Similarity=0.079 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..++++||||+|||+.....+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999998766665543
No 227
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.40 E-value=0.035 Score=56.74 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=18.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
..++++|++|+|||+++.-.+...
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999876666443
No 228
>PRK12377 putative replication protein; Provisional
Probab=96.34 E-value=0.056 Score=50.91 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=18.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..+++.|++|+|||..+...+-...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999987544443333
No 229
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.34 E-value=0.029 Score=54.10 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=37.8
Q ss_pred hhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 142 PSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 142 ~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
.-+..|.-+++.|++|+|||..+...+...+. ..|..++++.-- .-..++..++...
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~---------------~~g~~vl~iS~E-~~~~~~~~r~~~~ 81 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLIT---------------QHGVRVGTISLE-EPVVRTARRLLGQ 81 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHH---------------hcCceEEEEEcc-cCHHHHHHHHHHH
Confidence 34455678999999999999987777766551 225667777642 2345555555444
No 230
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.33 E-value=0.033 Score=67.60 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=49.3
Q ss_pred CChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR 209 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~ 209 (560)
.+++.|.+|+..++.. +-.+|.|+.|+|||.+ +..+...+ ...|.+|++++||---|..+.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~---------------~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLA---------------SEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHH---------------HhcCCeEEEEeCCHHHHHHHHH
Confidence 6789999999998875 6788999999999987 55555554 2457789999999876666554
Q ss_pred H
Q 008602 210 E 210 (560)
Q Consensus 210 ~ 210 (560)
.
T Consensus 493 ~ 493 (1960)
T TIGR02760 493 K 493 (1960)
T ss_pred H
Confidence 3
No 231
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.32 E-value=0.012 Score=64.99 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=55.7
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.+++-|.+|+... ...++|.|..|||||.+...-+...+.. ..-...++|+++.|+..|..+.+++
T Consensus 4 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~------------~~v~p~~IL~lTFTnkAA~em~~Rl 69 (715)
T TIGR01075 4 GLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSV------------ENASPHSIMAVTFTNKAAAEMRHRI 69 (715)
T ss_pred ccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHc------------CCCCHHHeEeeeccHHHHHHHHHHH
Confidence 5789999999753 4579999999999999977666665521 0123456999999999999999999
Q ss_pred HHHhC
Q 008602 212 KKLLG 216 (560)
Q Consensus 212 ~~~~~ 216 (560)
.+.++
T Consensus 70 ~~~~~ 74 (715)
T TIGR01075 70 GALLG 74 (715)
T ss_pred HHHhc
Confidence 88754
No 232
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.30 E-value=0.012 Score=64.96 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=55.5
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.++|-|.+|+... ...++|.|..|||||.+...-+...+.. ..-...++|+++-|+..|..+.+++
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~------------~~v~p~~IL~lTFT~kAA~Em~~Rl 74 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQV------------ENASPYSIMAVTFTNKAAAEMRHRI 74 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHc------------CCCChhHeEeeeccHHHHHHHHHHH
Confidence 5789999999754 3579999999999999977666655521 0123456999999999999999999
Q ss_pred HHHhC
Q 008602 212 KKLLG 216 (560)
Q Consensus 212 ~~~~~ 216 (560)
.+.++
T Consensus 75 ~~~~~ 79 (721)
T PRK11773 75 EQLLG 79 (721)
T ss_pred HHHhc
Confidence 88754
No 233
>PRK05642 DNA replication initiation factor; Validated
Probab=96.25 E-value=0.033 Score=52.25 Aligned_cols=29 Identities=17% Similarity=0.462 Sum_probs=20.0
Q ss_pred CeeEEEEechhhhhcc-chHHHHHHHHHHh
Q 008602 267 GCRFLVLDEIDELLSF-NFREAMHRIVEHV 295 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~-~~~~~l~~i~~~~ 295 (560)
+.+++|||++|.+.+. .+...+..+++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~ 126 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRL 126 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHH
Confidence 4579999999975443 4455567777665
No 234
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.20 E-value=0.09 Score=57.29 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhhc----C---CcE-EEEcCCCchHHHHHHHH
Q 008602 134 TEVQSAAIPSILK----N---HDV-VIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 134 ~~~Q~~ai~~i~~----~---~~~-li~~~TGsGKT~~~~~~ 167 (560)
+..|.+.|..++. + ..+ +|.|+||+|||.+.-..
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHH
Confidence 5555555543332 1 234 59999999999985444
No 235
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.07 Score=47.21 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=67.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEe
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~ 227 (560)
+-.+++||++||||...+..+.... ..|.++++..|-.. .+++ ...+..-.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~----------------~~g~~v~vfkp~iD----------~R~~---~~~V~Sr~ 55 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYK----------------EAGMKVLVFKPAID----------TRYG---VGKVSSRI 55 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHH----------------HcCCeEEEEecccc----------cccc---cceeeecc
Confidence 3468999999999998777776665 45677999888522 1211 11122222
Q ss_pred cCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHh
Q 008602 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHV 295 (560)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~ 295 (560)
|-. .+.++|-.+..+.+.+........ ++.|.|||||- ++...-..+.++.+.+
T Consensus 56 G~~------------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF-~~~~~v~~l~~lad~l 109 (201)
T COG1435 56 GLS------------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQF-FDEELVYVLNELADRL 109 (201)
T ss_pred CCc------------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHh-CCHHHHHHHHHHHhhc
Confidence 221 123667676667665544332222 78999999995 7777788888887654
No 236
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.14 E-value=0.053 Score=50.60 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..+++.|++|+|||..+...+-.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999886554433
No 237
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.13 E-value=0.0083 Score=55.63 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=31.0
Q ss_pred CCCeeEEEEechhhhhcc-chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChH
Q 008602 265 THGCRFLVLDEIDELLSF-NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS 328 (560)
Q Consensus 265 ~~~l~llIiDE~h~l~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 328 (560)
+.+.++|+||++|.+.+. ...+.+-.+++.+. ..+.++++.|...|..
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~----------------~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI----------------ESGKQLILTSDRPPSE 143 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH----------------HTTSEEEEEESS-TTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHH----------------hhCCeEEEEeCCCCcc
Confidence 345789999999986654 24556666666654 2455777777666543
No 238
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.12 E-value=0.12 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
++.++++||||+|||+.....+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999998866555443
No 239
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.11 E-value=0.037 Score=51.80 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..++++|++|+|||..+......
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999875444433
No 240
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.11 E-value=0.029 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=20.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
-+.|..||.|+|||.+++.++.+..
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 5689999999999999777765543
No 241
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.10 E-value=0.059 Score=54.33 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=62.5
Q ss_pred CeEEEEEcChhhHHHHHHHHHHCCC-------ceeeccCCCCHHHHHHHHHHhh----cCCceEE--EEecCcccCCCCC
Q 008602 414 QTVIAFMNNTRQLKDAVFKLEARGM-------KAAELHGDLGKLARSTTLKKFK----NGEVRVL--VTNELSARGLDVA 480 (560)
Q Consensus 414 ~~~iif~~~~~~~~~~~~~L~~~~~-------~~~~lhg~~~~~~r~~v~~~F~----~g~~~iL--vaT~~~~~Gidip 480 (560)
+.++.|+++.--.+.++......|+ +.. .-+.-+..+-.-.+..++ .|.-.|| ||-.=.++|+|..
T Consensus 531 dG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~-fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 531 DGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLL-FIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceE-EEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 4577788888777777766665442 122 222212222233344443 4555566 5556778999998
Q ss_pred CCC--EEEEccCCCCh------------------------------hhhHhhhccccCCCCcceEEEEec
Q 008602 481 ECD--LVVNLDLPTDS------------------------------IHYAHRAGRTGRLGRRGTVVSICE 518 (560)
Q Consensus 481 ~v~--~VI~~~~p~s~------------------------------~~y~Qr~GR~gR~g~~g~~~~l~~ 518 (560)
+-- .||.++.|.-. ..-.|..||+.|.. ..+...++.
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K-~dYg~mI~a 678 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGK-TDYGLMIFA 678 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhcc-ccceeeEee
Confidence 765 89999988522 22467889999974 455555543
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.96 E-value=0.066 Score=51.15 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=39.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhC
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 216 (560)
.+.+++|+||.|||.+.-.+.-.+--. . . .....-+-+.+-+|...-....|..+-..++
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~-----~--d--~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQ-----S--D--EDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCC-----C--C--CCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 579999999999999865555444211 0 0 0112236677778888777777777766654
No 243
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.039 Score=54.21 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=17.2
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
.+.|+.||+|+|||..+-+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHH
Confidence 478999999999999865443
No 244
>PRK06921 hypothetical protein; Provisional
Probab=95.94 E-value=0.097 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..+++.|++|+|||..+. ++...+
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHH
Confidence 5679999999999998754 444443
No 245
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.91 E-value=0.13 Score=53.24 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
|.-+++.|++|+|||...+..+.... ..+.+++++.- .+...|+..+...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a----------------~~g~~vlYvs~-Ees~~qi~~ra~r 129 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA----------------AAGGKVLYVSG-EESASQIKLRAER 129 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH----------------hcCCeEEEEEc-cccHHHHHHHHHH
Confidence 56789999999999998887776654 23556888774 4556777666544
No 246
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.90 E-value=0.012 Score=55.36 Aligned_cols=53 Identities=28% Similarity=0.473 Sum_probs=38.1
Q ss_pred cccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhC
Q 008602 102 IESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVG 173 (560)
Q Consensus 102 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~ 173 (560)
....|..+..|+++++++.+.+.+... .-=+||.||||||||+. +.+++.++.
T Consensus 98 lR~Ip~~i~~~e~LglP~i~~~~~~~~------------------~GLILVTGpTGSGKSTT-lAamId~iN 150 (353)
T COG2805 98 LRLIPSKIPTLEELGLPPIVRELAESP------------------RGLILVTGPTGSGKSTT-LAAMIDYIN 150 (353)
T ss_pred EeccCccCCCHHHcCCCHHHHHHHhCC------------------CceEEEeCCCCCcHHHH-HHHHHHHHh
Confidence 345778888888888887766533211 12389999999999987 667777774
No 247
>PHA02533 17 large terminase protein; Provisional
Probab=95.88 E-value=0.084 Score=55.64 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=55.7
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
+| .+.|+|...+..+..++-.++..+=..|||......++..... ..+.++++++|+..-|..++
T Consensus 57 Pf-~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~--------------~~~~~v~i~A~~~~QA~~vF 121 (534)
T PHA02533 57 KV-QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF--------------NKDKNVGILAHKASMAAEVL 121 (534)
T ss_pred ec-CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHH
Confidence 34 7899999999887666667788888899999877544433311 23558999999999999998
Q ss_pred HHHHHHhCC
Q 008602 209 REIKKLLGP 217 (560)
Q Consensus 209 ~~~~~~~~~ 217 (560)
+.++.....
T Consensus 122 ~~ik~~ie~ 130 (534)
T PHA02533 122 DRTKQAIEL 130 (534)
T ss_pred HHHHHHHHh
Confidence 888765543
No 248
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.87 E-value=0.16 Score=48.50 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc--CH-HHHHHHHHHHHHHhCCCCCceE
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP--SR-ELGMQIVREIKKLLGPSDKKAV 223 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P--t~-~La~Q~~~~~~~~~~~~~~~~~ 223 (560)
+..++++|++|+|||..+...+.... ..+..+.++.. .+ ..+.||....... +.. +
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~----------------~~~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~~-~ 133 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFH----------------GKKKTVGFITTDHSRIGTVQQLQDYVKTI----GFE-V 133 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH----------------HcCCeEEEEecCCCCHHHHHHHHHHhhhc----Cce-E
Confidence 46789999999999998665554433 12333444332 22 4555655433321 111 1
Q ss_pred EEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhh-ccchHHHHHHHHHHhccCCCCC
Q 008602 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL-SFNFREAMHRIVEHVGRRSGAN 302 (560)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~-~~~~~~~l~~i~~~~~~~~~~~ 302 (560)
+...++..+...+..- -...+++++|||-+=++. +......+..++....
T Consensus 134 ----------------------~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~------ 184 (270)
T PRK06731 134 ----------------------IAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVE------ 184 (270)
T ss_pred ----------------------EecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhC------
Confidence 1112333343322210 012356899999987643 2233444444444331
Q ss_pred CCCchhhhhhccCceEEEEEeeCCh-HHHHHHHHcC
Q 008602 303 PREPKSALAMRAERQTIMVSATVPF-SVIRAARSWG 337 (560)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~SAT~~~-~~~~~~~~~~ 337 (560)
+...++.+|||... +....++.|.
T Consensus 185 -----------~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 185 -----------PDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred -----------CCeEEEEEcCccCHHHHHHHHHHhC
Confidence 33457789998754 5666666653
No 249
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.85 E-value=0.12 Score=50.25 Aligned_cols=63 Identities=25% Similarity=0.395 Sum_probs=40.7
Q ss_pred HHhCCCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 125 LEREGFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
+.+.|. +++.|...+.. +..+.+++|+|+||||||.. +.+++..+.. ...+.+++++-.+.|+
T Consensus 111 l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~-------------~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 111 YVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAK-------------NDPTDRVVIIEDTREL 174 (299)
T ss_pred HHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhc-------------cCCCceEEEECCchhh
Confidence 444444 34555555554 44567999999999999986 4555555511 1124568888888776
No 250
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.82 E-value=0.17 Score=50.89 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=35.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
|.-+++.|++|+|||...+..+.... ..+.+++++.-. +...|+..+...
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a----------------~~g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA----------------KRGGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH----------------hcCCeEEEEECC-cCHHHHHHHHHH
Confidence 56789999999999998777776554 234568887654 445666655544
No 251
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.82 E-value=0.21 Score=47.97 Aligned_cols=139 Identities=15% Similarity=0.204 Sum_probs=69.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEc--cCHHHHHHHHHHHHHHhCCCCCceEEE
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA--PSRELGMQIVREIKKLLGPSDKKAVQQ 225 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~--Pt~~La~Q~~~~~~~~~~~~~~~~~~~ 225 (560)
+-++++|++|+|||++..-.+.... ..|.+++++. +.|.-+.++...+.+..+ .. +..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~----------------~~g~~V~li~~D~~r~~a~~ql~~~~~~~~---i~-~~~ 132 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK----------------KQGKSVLLAAGDTFRAAAIEQLEEWAKRLG---VD-VIK 132 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH----------------hcCCEEEEEeCCCCCHHHHHHHHHHHHhCC---eE-EEe
Confidence 4577899999999998776665543 3345566554 334444443333333322 11 111
Q ss_pred EecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhh-ccchHHHHHHHHHHhccCCCCCCC
Q 008602 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL-SFNFREAMHRIVEHVGRRSGANPR 304 (560)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~-~~~~~~~l~~i~~~~~~~~~~~~~ 304 (560)
...+.+... ...+.+.. ....++++||||=+-++. +......++.+.+.+......
T Consensus 133 ~~~~~dp~~------------------~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~--- 189 (272)
T TIGR00064 133 QKEGADPAA------------------VAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKD--- 189 (272)
T ss_pred CCCCCCHHH------------------HHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCC---
Confidence 111111111 01111110 112346788888776533 223445566665544211110
Q ss_pred CchhhhhhccCceEEEEEeeCChHHHHHHHHcC
Q 008602 305 EPKSALAMRAERQTIMVSATVPFSVIRAARSWG 337 (560)
Q Consensus 305 ~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 337 (560)
.+...++.++||...+....+..|.
T Consensus 190 --------~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 190 --------APDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred --------CCceEEEEEECCCCHHHHHHHHHHH
Confidence 1345688889997766555555543
No 252
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.78 E-value=0.03 Score=58.70 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhc-----C----CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHH
Q 008602 135 EVQSAAIPSILK-----N----HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205 (560)
Q Consensus 135 ~~Q~~ai~~i~~-----~----~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~ 205 (560)
|+|..++-.++. + +.+++.-+=|-|||......++..+.. ....+.+++++++++.-|.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~------------~g~~~~~i~~~A~~~~QA~ 68 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL------------DGEPGAEIYCAANTRDQAK 68 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc------------CCccCceEEEEeCCHHHHH
Confidence 577777777662 2 457888899999999765554444311 1245788999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 008602 206 QIVREIKKLLGPSD 219 (560)
Q Consensus 206 Q~~~~~~~~~~~~~ 219 (560)
.+++.+...+...+
T Consensus 69 ~~f~~~~~~i~~~~ 82 (477)
T PF03354_consen 69 IVFDEAKKMIEASP 82 (477)
T ss_pred HHHHHHHHHHHhCh
Confidence 99999998876543
No 253
>PRK08116 hypothetical protein; Validated
Probab=95.73 E-value=0.056 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=18.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..+++.|++|+|||..+.. +...+
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l 138 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANEL 138 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHH
Confidence 3499999999999998554 44444
No 254
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.72 E-value=0.15 Score=49.00 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=25.0
Q ss_pred CChHHHHHHHhhhh----cCC-cEEEEcCCCchHHHHHHHH
Q 008602 132 VPTEVQSAAIPSIL----KNH-DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~----~~~-~~li~~~TGsGKT~~~~~~ 167 (560)
-+++.+.+++..+. .+. .++++|++|+|||+.+...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 45666666766543 233 5889999999999875543
No 255
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.71 E-value=0.095 Score=54.55 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=17.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..++++|++|+|||..+ .++...+
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~ 172 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYI 172 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 45899999999999874 3444443
No 256
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.21 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=19.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
.-++++||+|+|||+++...+...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999988777654
No 257
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.65 E-value=0.28 Score=47.40 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=85.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEc--cCHHHHHHHHHHHHHHhCCCCCceEEEE
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA--PSRELGMQIVREIKKLLGPSDKKAVQQL 226 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~--Pt~~La~Q~~~~~~~~~~~~~~~~~~~~ 226 (560)
.++++|-.|+|||++..-.+.... ..|.+|++.+ ..|+-|..+.+.+.++.+. ..+..-
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~----------------~~g~~VllaA~DTFRAaAiEQL~~w~er~gv---~vI~~~ 201 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLK----------------QQGKSVLLAAGDTFRAAAIEQLEVWGERLGV---PVISGK 201 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHH----------------HCCCeEEEEecchHHHHHHHHHHHHHHHhCC---eEEccC
Confidence 478999999999998665555554 5567777776 3566666666666666432 222222
Q ss_pred ecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhcc-chHHHHHHHHHHhccCCCCCCCC
Q 008602 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF-NFREAMHRIVEHVGRRSGANPRE 305 (560)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~-~~~~~l~~i~~~~~~~~~~~~~~ 305 (560)
.|++.-......+... .-+++++|++|=|-||-.. +....+++|.+-+.+.....
T Consensus 202 ~G~DpAaVafDAi~~A---------------------kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~a--- 257 (340)
T COG0552 202 EGADPAAVAFDAIQAA---------------------KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDA--- 257 (340)
T ss_pred CCCCcHHHHHHHHHHH---------------------HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCC---
Confidence 3433333333332211 1245688888888886543 67788888887776433222
Q ss_pred chhhhhhccCceEEEEEeeCChHHHHHHHHcC
Q 008602 306 PKSALAMRAERQTIMVSATVPFSVIRAARSWG 337 (560)
Q Consensus 306 ~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 337 (560)
|..-++.+-||...+....++.|.
T Consensus 258 --------p~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 258 --------PHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred --------CceEEEEEEcccChhHHHHHHHHH
Confidence 122455558999888888887763
No 258
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.65 E-value=0.021 Score=55.05 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCCCChHHHHHHHhhhhcC-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.|...++.|...+..+... .++|++|.||||||+. +-++...+ ...-++|++--|.||..++
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i----------------~~~eRvItiEDtaELql~~ 216 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFI----------------DSDERVITIEDTAELQLAH 216 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcC----------------CCcccEEEEeehhhhccCC
Confidence 4557789999998877765 5999999999999985 44444444 2334799999998885544
No 259
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.62 E-value=0.16 Score=51.55 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=31.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEc--cCHHHHHHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA--PSRELGMQIVREIKKL 214 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~--Pt~~La~Q~~~~~~~~ 214 (560)
.++++|++|+|||+++.-.+.... ..|.++++++ |-|.-|.+|.+.+.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~----------------~~G~kV~lV~~D~~R~aA~eQLk~~a~~ 153 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQ----------------RKGFKPCLVCADTFRAGAFDQLKQNATK 153 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH----------------HCCCCEEEEcCcccchhHHHHHHHHhhc
Confidence 578999999999988666555433 2344566554 3455566555554443
No 260
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.052 Score=55.72 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=17.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
..|++||.|+|||..+...+-.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3799999999999987665543
No 261
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.58 E-value=0.044 Score=60.22 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=55.7
Q ss_pred ChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
+++.|.+++... ...++|.|..|||||.+.+.-+...+... .....++++++.|+..|.++.+++.
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~------------~~~p~~IL~vTFt~~Aa~em~~Rl~ 67 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNC------------GYKARNIAAVTFTNKAAREMKERVA 67 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc------------CCCHHHeEEEeccHHHHHHHHHHHH
Confidence 578999998753 45899999999999999777777666210 1234569999999999999999998
Q ss_pred HHhCC
Q 008602 213 KLLGP 217 (560)
Q Consensus 213 ~~~~~ 217 (560)
+.++.
T Consensus 68 ~~l~~ 72 (664)
T TIGR01074 68 KTLGK 72 (664)
T ss_pred HHhCc
Confidence 87754
No 262
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.56 E-value=0.056 Score=55.93 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=29.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
..++++|++|+|||... .++...+.. ...+.+++++.+ ..+...+...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~-------------~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIES-------------NFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHH-------------hCCCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999763 555554411 123456776555 45555554444
No 263
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.55 E-value=0.31 Score=47.85 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=35.6
Q ss_pred CCeeEEEEechhhhh-ccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc
Q 008602 266 HGCRFLVLDEIDELL-SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336 (560)
Q Consensus 266 ~~l~llIiDE~h~l~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 336 (560)
.++++||||=+-++. +....+.+..+.+.+...... .+...++.++||...+....+..|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~-----------~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPD-----------APHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCC-----------CCceEEEEEECCCChHHHHHHHHH
Confidence 456889999887643 334456666666544221111 134468999999876655555554
No 264
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.52 E-value=0.062 Score=55.39 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=17.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..+++.|++|+|||..+. ++...+
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l 165 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHAL 165 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHH
Confidence 458999999999998744 444444
No 265
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.51 E-value=0.054 Score=63.41 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=78.8
Q ss_pred ChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
.|+.|.+||. ..+++++|.|.-|||||.+.+--++..+... ..-.++++++=|+..|..+.+++.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-------------~~~~~il~~tFt~~aa~e~~~ri~ 66 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-------------VDIDRLLVVTFTNAAAREMKERIE 66 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-------------CCHhhEEEEeccHHHHHHHHHHHH
Confidence 4889999998 3688999999999999999877777766221 112459999999999999998888
Q ss_pred HHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHH-HHHcCCccCC-CeeEEEEechhh
Q 008602 213 KLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE-ISAAGKLHTH-GCRFLVLDEIDE 278 (560)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~-~l~~~~~~~~-~l~llIiDE~h~ 278 (560)
+.+...-.. .............-...-|+|-..+.. +++.....+. +..+=|.||...
T Consensus 67 ~~l~~~~~~--------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 67 EALQKALQQ--------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHhc--------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 865321100 001111112222223578899888754 5554332211 224566888874
No 266
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.45 E-value=0.085 Score=47.05 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=76.6
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEE
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 224 (560)
.....+++.+++|.|||.+++--++.++ ..|.+|+++.=.+--.. +.+...+ ...+. +.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~----------------g~G~~V~ivQFlKg~~~--~GE~~~l-~~l~~--v~ 78 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV----------------GHGKKVGVVQFIKGAWS--TGERNLL-EFGGG--VE 78 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH----------------HCCCeEEEEEEecCCCc--cCHHHHH-hcCCC--cE
Confidence 3456899999999999999999999988 66788888875443211 1111111 11111 11
Q ss_pred EEecCCC-------hhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccch--HHHHHHHHHHh
Q 008602 225 QLVGGAN-------RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF--REAMHRIVEHV 295 (560)
Q Consensus 225 ~~~~~~~-------~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~--~~~l~~i~~~~ 295 (560)
....|.. ....... ....+.... ..+.-..+++||+||+-..++.++ .+.+..+++.-
T Consensus 79 ~~~~g~~~~~~~~~~~e~~~~------------~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r 145 (191)
T PRK05986 79 FHVMGTGFTWETQDRERDIAA------------AREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR 145 (191)
T ss_pred EEECCCCCcccCCCcHHHHHH------------HHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC
Confidence 1111111 1110000 001111111 112235679999999998777765 34444444432
Q ss_pred ccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHH
Q 008602 296 GRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARS 335 (560)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~ 335 (560)
+....+|+..-.+++++...+..
T Consensus 146 -----------------p~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 146 -----------------PGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred -----------------CCCCEEEEECCCCCHHHHHhCch
Confidence 14456777666777777776654
No 267
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.44 E-value=0.095 Score=61.43 Aligned_cols=64 Identities=28% Similarity=0.319 Sum_probs=44.9
Q ss_pred CChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.+++.|.+|+..++.. +.++|.|..|+|||.+. ..++..+... ....+..++.++||---+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l-----------~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML-----------PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH-----------hhccCceEEEEechHHHHHHH
Confidence 6899999999999864 77899999999999873 2222222000 012356789999997666554
No 268
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.35 E-value=0.19 Score=48.06 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
.++++.||+|+|||..+-..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999865544
No 269
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.34 E-value=0.18 Score=43.78 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=35.6
Q ss_pred CCCeeEEEEechhhhhccch--HHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHH
Q 008602 265 THGCRFLVLDEIDELLSFNF--REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARS 335 (560)
Q Consensus 265 ~~~l~llIiDE~h~l~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~ 335 (560)
...+++||+||+-..++.++ .+.+..+++.- +....+|+.+-.+++++...+..
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r-----------------p~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAK-----------------PEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC-----------------CCCCEEEEECCCCCHHHHHhCce
Confidence 35679999999997666654 34444454432 14456777777788777776653
No 270
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.32 E-value=0.086 Score=56.76 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=17.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
-+|++|+.|+|||..+...+-.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999986655433
No 271
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.26 E-value=0.059 Score=49.15 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=16.4
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
.++|++||+|+|||..+.+-+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHH
Confidence 368999999999998754443
No 272
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.25 E-value=0.46 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.5
Q ss_pred EEEEcCCCchHHHHHHHH
Q 008602 150 VVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~ 167 (560)
+++.||.|+|||..+-..
T Consensus 1 ill~G~~G~GKT~l~~~l 18 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARAL 18 (132)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHH
Confidence 589999999999874433
No 273
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.24 E-value=0.29 Score=52.01 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=51.1
Q ss_pred ChHHHHHHHhhhhc---CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILK---NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR 209 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~---~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~ 209 (560)
|.|.=.+-|+.+.+ .+-.++.+|=|.|||.+..+.+...+. ..|.++++++|...-+.++.+
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~---------------f~Gi~IlvTAH~~~ts~evF~ 234 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMIS---------------FLEIDIVVQAQRKTMCLTLYN 234 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHH---------------hcCCeEEEECCChhhHHHHHH
Confidence 45555555555443 577899999999999987766655441 135779999999999999998
Q ss_pred HHHHHhC
Q 008602 210 EIKKLLG 216 (560)
Q Consensus 210 ~~~~~~~ 216 (560)
++...+.
T Consensus 235 rv~~~le 241 (752)
T PHA03333 235 RVETVVH 241 (752)
T ss_pred HHHHHHH
Confidence 8887765
No 274
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.20 E-value=0.072 Score=52.56 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=31.0
Q ss_pred ChHHHHHHHhhhhcC----CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 133 PTEVQSAAIPSILKN----HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~----~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+|||...+..+... +-.|++||.|.|||..+...+-..+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 468899999887764 3578999999999988766554433
No 275
>PLN03025 replication factor C subunit; Provisional
Probab=95.19 E-value=0.23 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=18.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
.+++++||+|+|||..+...+-.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999886555444
No 276
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.18 E-value=0.083 Score=58.61 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=56.3
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.++|-|.+|+... ...++|.|..|||||.+...-+...+... .-...++|+++-|+..|..+.+++
T Consensus 4 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~------------~i~P~~IL~lTFT~kAA~em~~Rl 69 (726)
T TIGR01073 4 HLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEK------------NVAPWNILAITFTNKAAREMKERV 69 (726)
T ss_pred ccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcC------------CCCHHHeeeeeccHHHHHHHHHHH
Confidence 5789999999863 45799999999999999777776665210 122356999999999999999999
Q ss_pred HHHhCC
Q 008602 212 KKLLGP 217 (560)
Q Consensus 212 ~~~~~~ 217 (560)
.++++.
T Consensus 70 ~~~~~~ 75 (726)
T TIGR01073 70 EKLLGP 75 (726)
T ss_pred HHHhcc
Confidence 887653
No 277
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.17 E-value=0.23 Score=49.13 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.9
Q ss_pred hhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 143 SILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 143 ~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
++..+.+++|+|+||||||+. +.+++..+
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~i 184 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREI 184 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhC
Confidence 344578999999999999976 56666666
No 278
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.16 E-value=0.33 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
+.++++.||+|+|||.++...
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 457999999999999986443
No 279
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.14 E-value=0.01 Score=68.39 Aligned_cols=94 Identities=24% Similarity=0.371 Sum_probs=78.3
Q ss_pred CeEEEEEcChhhHHHHHHHHHHCC-CceeeccCCCC-----------HHHHHHHHHHhhcCCceEEEEecCcccCCCCCC
Q 008602 414 QTVIAFMNNTRQLKDAVFKLEARG-MKAAELHGDLG-----------KLARSTTLKKFKNGEVRVLVTNELSARGLDVAE 481 (560)
Q Consensus 414 ~~~iif~~~~~~~~~~~~~L~~~~-~~~~~lhg~~~-----------~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~ 481 (560)
-..++|++....+...++.+.+.+ ..+..+.|.+. ...+..++..|...++++|++|.++++|+|+|.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 466899999999988888887753 23444555442 223678999999999999999999999999999
Q ss_pred CCEEEEccCCCChhhhHhhhccccCC
Q 008602 482 CDLVVNLDLPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 482 v~~VI~~~~p~s~~~y~Qr~GR~gR~ 507 (560)
|+.|+.++.|.....|+|+.||+-+.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999998655
No 280
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.14 E-value=0.13 Score=55.37 Aligned_cols=148 Identities=15% Similarity=0.170 Sum_probs=83.5
Q ss_pred HHhCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 125 LEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
+......++..-|.+.+..+++. +-+++.|+-|-|||.+.-+++...... ....+++|.+|+.+
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~--------------~~~~~iiVTAP~~~ 272 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL--------------AGSVRIIVTAPTPA 272 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh--------------cCCceEEEeCCCHH
Confidence 44444434444444555566654 357899999999999888766443310 11457999999999
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEecC-CChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhc
Q 008602 203 LGMQIVREIKKLLGPSDKKAVQQLVGG-ANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLS 281 (560)
Q Consensus 203 La~Q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~ 281 (560)
-+..+.....+-+...+... ...... .+. .........|=+.+|..... .-+++|||||=-+
T Consensus 273 nv~~Lf~fa~~~l~~lg~~~-~v~~d~~g~~----~~~~~~~~~i~y~~P~~a~~----------~~DllvVDEAAaI-- 335 (758)
T COG1444 273 NVQTLFEFAGKGLEFLGYKR-KVAPDALGEI----REVSGDGFRIEYVPPDDAQE----------EADLLVVDEAAAI-- 335 (758)
T ss_pred HHHHHHHHHHHhHHHhCCcc-ccccccccce----eeecCCceeEEeeCcchhcc----------cCCEEEEehhhcC--
Confidence 88887766665544332110 000000 000 00000111244555544421 1589999999852
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC
Q 008602 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326 (560)
Q Consensus 282 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~ 326 (560)
.-+.+++++... +.++||.|+.
T Consensus 336 --plplL~~l~~~~---------------------~rv~~sTTIh 357 (758)
T COG1444 336 --PLPLLHKLLRRF---------------------PRVLFSTTIH 357 (758)
T ss_pred --ChHHHHHHHhhc---------------------CceEEEeeec
Confidence 245556665443 5789999984
No 281
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.12 E-value=0.17 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=17.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..++++|++|+|||..+ .++...+
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l 160 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEI 160 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHH
Confidence 35789999999999875 4444444
No 282
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.11 Score=54.51 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=17.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
-.|++||.|+|||.++...+-.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999987665544
No 283
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.10 E-value=0.33 Score=45.84 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=30.6
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 199 (560)
..|.-++|+|++|+|||..++..+...+. ..+..+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~---------------~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAK---------------KQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH---------------hCCCceEEEeC
Confidence 44677899999999999988888777661 22566888874
No 284
>CHL00181 cbbX CbbX; Provisional
Probab=95.03 E-value=0.32 Score=47.07 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+.++++.||+|+|||.++-..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999987665443
No 285
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.2 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~ 169 (560)
+..|++||.|+|||..+.+.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4689999999999998766553
No 286
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.96 E-value=0.16 Score=50.27 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=32.0
Q ss_pred hhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 143 SILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 143 ~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
++..+.+++|+|+||||||+. +.+++..+ ....+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i----------------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI----------------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc----------------CCCCCEEEECCCcccc
Confidence 455578999999999999976 55666655 2234577777777663
No 287
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.95 E-value=0.23 Score=59.11 Aligned_cols=64 Identities=28% Similarity=0.310 Sum_probs=45.9
Q ss_pred CChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.+++.|..|+..++.. +-++|.|..|+|||.+ +..+...+... ....+..++.++||---|..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l-----------~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL-----------PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh-----------hcccCceEEEECCcHHHHHHH
Confidence 6899999999999975 5789999999999987 44444433100 012356789999997665544
No 288
>PRK10867 signal recognition particle protein; Provisional
Probab=94.88 E-value=0.4 Score=49.08 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
-++++|++|+|||+++.-.+....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999998777766544
No 289
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.87 E-value=0.03 Score=59.47 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=77.7
Q ss_pred CChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH-
Q 008602 132 VPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV- 208 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~- 208 (560)
..+|+|.+.++++... +.+.++.++-+|||.+.+..+...+. .....++++.||..+|..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~---------------~~P~~~l~v~Pt~~~a~~~~~ 80 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID---------------QDPGPMLYVQPTDDAAKDFSK 80 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE---------------eCCCCEEEEEEcHHHHHHHHH
Confidence 5689999999998876 57899999999999976666655552 22344999999999999987
Q ss_pred HHHHHHhCCCCCceEEEEec----CCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhh
Q 008602 209 REIKKLLGPSDKKAVQQLVG----GANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDEL 279 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l 279 (560)
.++...+...+... ..+.. ....+.....+. |. .+.++.-..-. .+.-..++++++||+|..
T Consensus 81 ~rl~Pmi~~sp~l~-~~~~~~~~~~~~~t~~~k~f~-gg-~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~ 146 (557)
T PF05876_consen 81 ERLDPMIRASPVLR-RKLSPSKSRDSGNTILYKRFP-GG-FLYLVGANSPS------NLRSRPARYLLLDEVDRY 146 (557)
T ss_pred HHHHHHHHhCHHHH-HHhCchhhcccCCchhheecC-CC-EEEEEeCCCCc------ccccCCcCEEEEechhhc
Confidence 66766665554321 11111 111222222222 22 23333221111 122345789999999985
No 290
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.83 E-value=0.17 Score=50.53 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=17.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~ 169 (560)
.+++.||+|+|||..+...+-
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999988655543
No 291
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.81 E-value=0.14 Score=55.52 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHC-C-CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCc
Q 008602 398 QHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEAR-G-MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473 (560)
Q Consensus 398 ~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~-~-~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~ 473 (560)
+.|.+.+.+++.. ..+.++||.++.+..+.++...|++. + ..+..+|+++++.+|.+......+|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 3566666566554 24789999999999999999999876 3 679999999999999999999999999999999753
Q ss_pred ccCCCCCCCCEEEEcc
Q 008602 474 ARGLDVAECDLVVNLD 489 (560)
Q Consensus 474 ~~Gidip~v~~VI~~~ 489 (560)
. =.-+++...||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 2 23344667777443
No 292
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.81 E-value=0.21 Score=51.11 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
.+++|.|++|+|||...-..+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999998844443
No 293
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.81 E-value=0.21 Score=48.99 Aligned_cols=63 Identities=27% Similarity=0.314 Sum_probs=40.1
Q ss_pred HHhCCCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 125 LEREGFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
+...|. .++.|...+.. +..+.+++|+|+||||||+. +.+++..+.. ...+.+++++=.+.||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~-------------~~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVA-------------SAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhc-------------CCCCceEEEecCCccc
Confidence 334444 45677777655 44467899999999999986 4555555411 0123456777767666
No 294
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.80 E-value=0.19 Score=51.16 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=29.1
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i 168 (560)
-+-......+..+..+++++++|++|+|||..+-..+
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 3455566677778889999999999999999875444
No 295
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.79 E-value=0.17 Score=53.30 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=63.6
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC-CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEE
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN 487 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~-~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~ 487 (560)
.+.+++|.+|++.-+.++.+.|++. +..+..+||+++..+|.+...+..+|+.+|+|+|..+-. ..++++.+||.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 3679999999999999999999875 678899999999999999999989999999999975332 34667888874
No 296
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.74 E-value=0.15 Score=44.85 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCeeEEEEechhhhhccch--HHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHH
Q 008602 266 HGCRFLVLDEIDELLSFNF--REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARS 335 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~~~--~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~ 335 (560)
..+++||+||+-..++.++ .+.+..+++.- ++...+|+..-.+++.+..++..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r-----------------p~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQER-----------------PGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC-----------------CCCCEEEEECCCCCHHHHHhCce
Confidence 5679999999998777664 33444444432 24556777777777777776654
No 297
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.74 E-value=0.38 Score=49.71 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..++++|++|+|||..+ .++...+
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l 154 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYV 154 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHH
Confidence 35899999999999874 3444443
No 298
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.12 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=18.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+-.|++||.|+|||..+...+-.
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35699999999999987655544
No 299
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.70 E-value=0.31 Score=47.83 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=41.0
Q ss_pred HHHhCCCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 124 RLEREGFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 124 ~l~~~~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
.+...|+ +++.|.+.+.. +..+++++|+|+||||||.. +.+++..+.. .....+++++-.+.+
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~-------------~~~~~rivtIEd~~E 189 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVI-------------QDPTERVFIIEDTGE 189 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhh-------------cCCCceEEEEcCCCc
Confidence 3444555 35677777765 55678999999999999965 5555554310 012345777777766
Q ss_pred H
Q 008602 203 L 203 (560)
Q Consensus 203 L 203 (560)
+
T Consensus 190 l 190 (319)
T PRK13894 190 I 190 (319)
T ss_pred c
Confidence 6
No 300
>PRK06904 replicative DNA helicase; Validated
Probab=94.65 E-value=0.63 Score=48.51 Aligned_cols=153 Identities=13% Similarity=0.147 Sum_probs=77.2
Q ss_pred HHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCC
Q 008602 140 AIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSD 219 (560)
Q Consensus 140 ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~ 219 (560)
.+.-+..|.-++|.|.+|.|||..++..+..... ..|..|++.+.- --..|+..++-.......
T Consensus 214 ~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~---------------~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~ 277 (472)
T PRK06904 214 KTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAM---------------ASEKPVLVFSLE-MPAEQIMMRMLASLSRVD 277 (472)
T ss_pred HHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHH---------------hcCCeEEEEecc-CCHHHHHHHHHHhhCCCC
Confidence 3333444567889999999999977666555431 224457777654 456777766655433322
Q ss_pred CceEEEEecC-CChhHHHHHHH------cCCCcEEEe-----CchHHHHHHHcCCccCCCeeEEEEechhhhhccc----
Q 008602 220 KKAVQQLVGG-ANRSRQEEALR------KNKPAIVVG-----TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFN---- 283 (560)
Q Consensus 220 ~~~~~~~~~~-~~~~~~~~~l~------~~~~~IlI~-----Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~---- 283 (560)
.. .+..| .-....+..+. ...+.+.|- |+..+.............+++||||=.|.|...+
T Consensus 278 ~~---~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~ 354 (472)
T PRK06904 278 QT---KIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDN 354 (472)
T ss_pred HH---HhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCc
Confidence 21 12222 11222222211 112345552 3444433222111112357899999999764322
Q ss_pred hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEe
Q 008602 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSA 323 (560)
Q Consensus 284 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SA 323 (560)
....+..+.+.+. .++..-++.++++|-
T Consensus 355 r~~ei~~isr~LK------------~lAkel~ipVi~lsQ 382 (472)
T PRK06904 355 RTLEIAEISRSLK------------ALAKELKVPVVALSQ 382 (472)
T ss_pred HHHHHHHHHHHHH------------HHHHHhCCeEEEEEe
Confidence 2334444444332 223334566777763
No 301
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.65 E-value=0.25 Score=52.41 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=20.2
Q ss_pred CCCeeEEEEechhhhhccc-hHHHHHHHHHHh
Q 008602 265 THGCRFLVLDEIDELLSFN-FREAMHRIVEHV 295 (560)
Q Consensus 265 ~~~l~llIiDE~h~l~~~~-~~~~l~~i~~~~ 295 (560)
+.++++|||||+|.+.+.. ..+.+..+++.+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l 406 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTL 406 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHH
Confidence 3457899999999865543 344455565555
No 302
>PF13173 AAA_14: AAA domain
Probab=94.64 E-value=0.31 Score=40.79 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=19.2
Q ss_pred eeEEEEechhhhhccchHHHHHHHHHH
Q 008602 268 CRFLVLDEIDELLSFNFREAMHRIVEH 294 (560)
Q Consensus 268 l~llIiDE~h~l~~~~~~~~l~~i~~~ 294 (560)
-.+|+|||+|++- ++...++.+.+.
T Consensus 62 ~~~i~iDEiq~~~--~~~~~lk~l~d~ 86 (128)
T PF13173_consen 62 KKYIFIDEIQYLP--DWEDALKFLVDN 86 (128)
T ss_pred CcEEEEehhhhhc--cHHHHHHHHHHh
Confidence 4689999999853 577777777664
No 303
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.63 E-value=0.11 Score=56.11 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHC-CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCc
Q 008602 397 LQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473 (560)
Q Consensus 397 ~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~-~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~ 473 (560)
-+.|.+...+++.. ..+.++||.+|.+.-..++...++.. +.++..+|+++++.+|.....+..+|+.+|+|.|-.+
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA 306 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA 306 (730)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh
Confidence 34555666565554 35789999999999999999999876 7899999999999999999999999999999999753
Q ss_pred ccCCCCCCCCEEE
Q 008602 474 ARGLDVAECDLVV 486 (560)
Q Consensus 474 ~~Gidip~v~~VI 486 (560)
- -.=+++...||
T Consensus 307 l-F~Pf~~LGLII 318 (730)
T COG1198 307 L-FLPFKNLGLII 318 (730)
T ss_pred h-cCchhhccEEE
Confidence 2 22344666776
No 304
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.63 E-value=0.2 Score=54.77 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=64.9
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC-CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEcc
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLD 489 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~-~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~ 489 (560)
.+.+++|.+|++.-+.++.+.|++. +..+..+||+++..+|...+....+|+.+|+|+|..+.. +.+.++.+||.-+
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 3679999999999999999999874 788999999999999999999999999999999974332 4566788887443
No 305
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.62 E-value=0.22 Score=49.53 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
++.++++||+|+|||......+....
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999998766665543
No 306
>PRK05973 replicative DNA helicase; Provisional
Probab=94.59 E-value=0.068 Score=49.79 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=44.9
Q ss_pred ChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
++| ..+...-+..|.-++|.|++|+|||..++..+...+ ..|.+++|++-- +-..|+.+++.
T Consensus 51 ~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a----------------~~Ge~vlyfSlE-es~~~i~~R~~ 112 (237)
T PRK05973 51 TTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM----------------KSGRTGVFFTLE-YTEQDVRDRLR 112 (237)
T ss_pred CCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH----------------hcCCeEEEEEEe-CCHHHHHHHHH
Confidence 455 223444555678899999999999999998888776 335668887643 33567777776
Q ss_pred HH
Q 008602 213 KL 214 (560)
Q Consensus 213 ~~ 214 (560)
..
T Consensus 113 s~ 114 (237)
T PRK05973 113 AL 114 (237)
T ss_pred Hc
Confidence 54
No 307
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.24 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=17.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
..|++||+|+|||..+...+-.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999986655433
No 308
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.53 E-value=0.12 Score=56.59 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=65.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec-CcccCCCCCCCCEEE
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE-LSARGLDVAECDLVV 486 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~-~~~~Gidip~v~~VI 486 (560)
.+.+++|.+|+..-+.+.+..+++. ++++..+||+++..++..++....+|+.+|+|+|. .+...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4679999999999888887776653 68999999999999999999999999999999996 455667888898888
No 309
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.52 E-value=0.13 Score=57.09 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=19.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+-.|++|+.|+|||.++...+-..
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 347999999999999877666443
No 310
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.51 E-value=0.21 Score=49.32 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=18.3
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHH
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEH 294 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~ 294 (560)
..++|||||+|.+........+..+++.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~ 127 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEA 127 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHh
Confidence 4579999999986343344555555544
No 311
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.45 E-value=0.11 Score=63.23 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=45.2
Q ss_pred CChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHH---HHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYL---LPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
.+++.|..|+..++.+ +-++|.|..|+|||.+.. -++.... ...+.+++.++||-.-|.+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~---------------~~~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF---------------ESEQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH---------------HhcCCeEEEEeChHHHHHH
Confidence 6899999999998865 567889999999998752 2333333 1346779999999666555
Q ss_pred H
Q 008602 207 I 207 (560)
Q Consensus 207 ~ 207 (560)
+
T Consensus 1084 L 1084 (1960)
T TIGR02760 1084 L 1084 (1960)
T ss_pred H
Confidence 4
No 312
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=1.1 Score=43.78 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=33.1
Q ss_pred CcccCCcccCC-CCHHHHHHHH--hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHH
Q 008602 106 PFAANSFLELG-LPPLLLERLE--REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 106 ~~~~~~f~~~~-l~~~l~~~l~--~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~ 164 (560)
..|..+|++.| |..++.+.-+ ..+.+.|--++.-.|. .=+.+|+.||+|+|||+.+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHH
Confidence 35567788875 4444433222 2244444434333222 2368999999999999974
No 313
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.38 E-value=0.21 Score=49.71 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc-CHHHHHHHHHHHHHHhCCCCCceEEE
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP-SRELGMQIVREIKKLLGPSDKKAVQQ 225 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P-t~~La~Q~~~~~~~~~~~~~~~~~~~ 225 (560)
++.+.++||||.|||++..=.+....... +...-+||..- -|.=|..+...+.+.++-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-------------~~~kVaiITtDtYRIGA~EQLk~Ya~im~v-------- 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-------------KKKKVAIITTDTYRIGAVEQLKTYADIMGV-------- 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-------------cCcceEEEEeccchhhHHHHHHHHHHHhCC--------
Confidence 56788999999999998555554443111 12223455443 345555555555555331
Q ss_pred EecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhh-ccchHHHHHHHHHHhccCCCCCCC
Q 008602 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL-SFNFREAMHRIVEHVGRRSGANPR 304 (560)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~-~~~~~~~l~~i~~~~~~~~~~~~~ 304 (560)
|-.++-+|.-|...+. .+.++++|.||=+-+.. +......++.++...
T Consensus 262 ------------------p~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~--------- 310 (407)
T COG1419 262 ------------------PLEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVS--------- 310 (407)
T ss_pred ------------------ceEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcc---------
Confidence 2245555555554332 34556888888777522 223344555554433
Q ss_pred CchhhhhhccCceEEEEEeeCChHH
Q 008602 305 EPKSALAMRAERQTIMVSATVPFSV 329 (560)
Q Consensus 305 ~~~~~~~~~~~~~~l~~SAT~~~~~ 329 (560)
.+.--.+.+|||-..+.
T Consensus 311 --------~~i~~~Lvlsat~K~~d 327 (407)
T COG1419 311 --------HSIEVYLVLSATTKYED 327 (407)
T ss_pred --------ccceEEEEEecCcchHH
Confidence 13345788899986443
No 314
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.37 E-value=0.25 Score=49.65 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=32.4
Q ss_pred CeeEEEEechhhhhcc-chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHH
Q 008602 267 GCRFLVLDEIDELLSF-NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVI 330 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~ 330 (560)
++++++||.+|.+.+. ...+.+-.+++.+.. .+.|+++.|..+|.+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~----------------~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE----------------NGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh----------------cCCEEEEEcCCCchhhc
Confidence 6799999999986554 345566666666641 34477777777665544
No 315
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.69 Score=48.18 Aligned_cols=57 Identities=16% Similarity=0.060 Sum_probs=36.0
Q ss_pred cccCCcccCCCCHHHHHHHHhC---CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHH
Q 008602 107 FAANSFLELGLPPLLLERLERE---GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~ 166 (560)
-|...|.+.|--..+...|.-. +++. |.+-+++-.-. -..+|+|||+|+|||+.+=.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~--pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKA 564 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKR--PDLFKALGIDA-PSGVLLCGPPGCGKTLLAKA 564 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccC--HHHHHHhCCCC-CCceEEeCCCCccHHHHHHH
Confidence 4566788887666666555422 4443 44444443322 34699999999999997533
No 316
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.36 E-value=0.69 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=18.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
.++++|++|+|||+++.-.+...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999977766553
No 317
>PRK04195 replication factor C large subunit; Provisional
Probab=94.35 E-value=0.22 Score=52.34 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+.+++.||+|+|||..+...
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 467999999999999875433
No 318
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.34 E-value=0.23 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=18.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+.+|++|+.|+|||..+...+-.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35799999999999987665543
No 319
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.32 E-value=0.27 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=18.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
.-++++||||+|||++....+...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhH
Confidence 457899999999998866555443
No 320
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.84 Score=43.20 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=69.3
Q ss_pred HhhhhcC-----CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHh
Q 008602 141 IPSILKN-----HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLL 215 (560)
Q Consensus 141 i~~i~~~-----~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~ 215 (560)
+|.+..| +.+|+.||+|+||+..+-..+-++- -..+-+.+..|+..|..+-.++.
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--------------------STFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--------------------STFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--------------------CceEEeehHHHHHHHhccHHHHH
Confidence 3556666 4589999999999976443333321 25677777788777765555441
Q ss_pred CCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhcc---chHHHHHHHH
Q 008602 216 GPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF---NFREAMHRIV 292 (560)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~---~~~~~l~~i~ 292 (560)
.. |..+-+. +..++|+|||+|.+.+. +-.+..++|.
T Consensus 215 kn------------------------------------LFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIK 253 (439)
T KOG0739|consen 215 KN------------------------------------LFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIK 253 (439)
T ss_pred HH------------------------------------HHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHH
Confidence 10 1111111 22478999999976543 2223333333
Q ss_pred HHhcc-CCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHH
Q 008602 293 EHVGR-RSGANPREPKSALAMRAERQTIMVSATVPFSVIRAAR 334 (560)
Q Consensus 293 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~ 334 (560)
..+.. ..+.. ..+-.++.+.||-.|.+...+-
T Consensus 254 TEfLVQMqGVG----------~d~~gvLVLgATNiPw~LDsAI 286 (439)
T KOG0739|consen 254 TEFLVQMQGVG----------NDNDGVLVLGATNIPWVLDSAI 286 (439)
T ss_pred HHHHHhhhccc----------cCCCceEEEecCCCchhHHHHH
Confidence 32221 11111 1344689999998877665543
No 321
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.28 E-value=0.48 Score=48.92 Aligned_cols=163 Identities=14% Similarity=0.119 Sum_probs=80.6
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|+...++.=...+.-+..|.-++|.|++|+|||..++..+..... ..|..|++++.- .-+.|+.
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~---------------~~g~~v~~fSlE-m~~~~l~ 239 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVAL---------------REGKPVLFFSLE-MSAEQLG 239 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH---------------hCCCcEEEEECC-CCHHHHH
Confidence 343334444444444555677899999999999987777755431 224457777632 3355555
Q ss_pred HHHHHHhCCCCCceEEEEecCCChhHHHH-------HHHcCCCcEEEeC-----chHHHHHHHcCCccCCCeeEEEEech
Q 008602 209 REIKKLLGPSDKKAVQQLVGGANRSRQEE-------ALRKNKPAIVVGT-----PGRIAEISAAGKLHTHGCRFLVLDEI 276 (560)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~IlI~T-----p~~l~~~l~~~~~~~~~l~llIiDE~ 276 (560)
.++-......+.. .+..|.-....+. .+... .+.|.- .+.+......-......+++||||=.
T Consensus 240 ~Rl~~~~~~v~~~---~~~~~~l~~~~~~~~~~~~~~l~~~--~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyL 314 (421)
T TIGR03600 240 ERLLASKSGINTG---NIRTGRFNDSDFNRLLNAVDRLSEK--DLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYI 314 (421)
T ss_pred HHHHHHHcCCCHH---HHhcCCCCHHHHHHHHHHHHHHhcC--CEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 5544332222111 1222222222222 22222 255532 22333322211111225789999999
Q ss_pred hhhhc---cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEee
Q 008602 277 DELLS---FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT 324 (560)
Q Consensus 277 h~l~~---~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT 324 (560)
|.|.. .+....+..+.+.+. .++..-++.++++|-.
T Consensus 315 ql~~~~~~~~~~~~~~~i~~~Lk------------~lAke~~i~Vi~lsQl 353 (421)
T TIGR03600 315 QLMAPTRGRDRNEELGGISRGLK------------ALAKELDVPVVLLAQL 353 (421)
T ss_pred cccCCCCCCCHHHHHHHHHHHHH------------HHHHHhCCcEEEeccc
Confidence 87653 133334444444332 2233355677777654
No 322
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.27 E-value=0.067 Score=50.37 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=39.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
|..++|.|++|+|||..++..+...+ ..|..+++++ +.+-..|+.+.+..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~----------------~~ge~~lyvs-~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL----------------QMGEPGIYVA-LEEHPVQVRRNMAQ 70 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH----------------HcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 57899999999999999998888876 3456688877 44566777777665
No 323
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.22 E-value=0.16 Score=48.81 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=33.9
Q ss_pred HHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 136 VQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 136 ~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
...+.+.. +..+..++++|+||||||... ..++..+. ....+++++-.+.|+
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~---------------~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIP---------------PEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCH---------------TTTSEEEEEESSS-S
T ss_pred HHHHHHhhccccceEEEEECCCccccchHH-HHHhhhcc---------------ccccceEEeccccce
Confidence 33344433 345688999999999999874 55566651 113567887777666
No 324
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.22 E-value=0.9 Score=40.28 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHHhhh
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+++.|++|+|||......+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999766665543
No 325
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.20 E-value=0.66 Score=48.60 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=18.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..|++||.|+|||..+...+-.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999987665543
No 326
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.15 E-value=0.1 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=20.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++++.||+|+|||.+....+-..+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh
Confidence 4799999999999998666555544
No 327
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.12 E-value=0.11 Score=53.11 Aligned_cols=44 Identities=34% Similarity=0.480 Sum_probs=32.4
Q ss_pred HHhCCCCCChHHHHHHHhhhhcCC--cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 125 LEREGFNVPTEVQSAAIPSILKNH--DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~~~--~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+.+.|+ .+.|...+..+++.. =+|+.||||||||.. +..++..+
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 344455 688888888877753 367899999999987 56666665
No 328
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.07 E-value=0.46 Score=41.83 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=72.3
Q ss_pred EEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEec-
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG- 228 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~- 228 (560)
+.|.-..|-|||.+++--++.++ +.|.+|+|+.=.+--...=...+.+.+. ...+..+-.
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa----------------G~G~rV~iiQFlKg~~~~GE~~~l~~~~---~v~~~~~g~~ 84 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA----------------GQGTPVLIVQFLKGGIQQGPDRPIQLGQ---NLDWVRCDLP 84 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh----------------cCCCEEEEEEEecCCCcchHHHHHHhCC---CcEEEECCCC
Confidence 45666678999999999999998 6788899988554431111111222222 111111100
Q ss_pred ----CCChh-HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccch--HHHHHHHHHHhccCCCC
Q 008602 229 ----GANRS-RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF--REAMHRIVEHVGRRSGA 301 (560)
Q Consensus 229 ----~~~~~-~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~--~~~l~~i~~~~~~~~~~ 301 (560)
..+.. ...... ...+.... ..+.-..+++||+||+-..++.++ .+.+..+++.-
T Consensus 85 ~~~~~~~~~~~~~~~~------------~~~~~~a~-~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~r------ 145 (178)
T PRK07414 85 RCLDTPHLDESEKKAL------------QELWQYTQ-AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKR------ 145 (178)
T ss_pred CeeeCCCcCHHHHHHH------------HHHHHHHH-HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhC------
Confidence 01111 111110 01111111 112235679999999998777764 33444444432
Q ss_pred CCCCchhhhhhccCceEEEEEeeCChHHHHHHH
Q 008602 302 NPREPKSALAMRAERQTIMVSATVPFSVIRAAR 334 (560)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~ 334 (560)
++...+|+..-.+++++...+.
T Consensus 146 -----------p~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 146 -----------PSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred -----------CCCCEEEEECCCCCHHHHHhCC
Confidence 2455677777777777776654
No 329
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.17 Score=51.00 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=16.8
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~ 169 (560)
..+++||.|+|||..+...+-
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 468999999999998655543
No 330
>PRK08506 replicative DNA helicase; Provisional
Probab=94.03 E-value=0.71 Score=48.22 Aligned_cols=115 Identities=16% Similarity=0.086 Sum_probs=62.3
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceE
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 223 (560)
+..|.-++|.|.+|.|||..++..+...+ ..|..|++.+.- .-+.|+..++-......+...
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~----------------~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~- 250 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKAL----------------NQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQN- 250 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHH----------------hcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHH-
Confidence 33456789999999999998887777665 234557777543 456777766655433222211
Q ss_pred EEEecCCChhHHHH-------HHHcCCCcEEEe-----CchHHHHHHHcCCccCCCeeEEEEechhhhh
Q 008602 224 QQLVGGANRSRQEE-------ALRKNKPAIVVG-----TPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 224 ~~~~~~~~~~~~~~-------~l~~~~~~IlI~-----Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~ 280 (560)
+..+.-....+. .+... + +.|- |+..+....+........+++||||=.+.|.
T Consensus 251 --i~~~~l~~~e~~~~~~a~~~l~~~-~-l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 251 --LRTGDLDDDEWERLSDACDELSKK-K-LFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred --HhcCCCCHHHHHHHHHHHHHHHcC-C-eEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 112221122222 22222 2 4443 3333433222111112357899999999765
No 331
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.02 E-value=0.37 Score=51.03 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=79.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCC-CceEEE
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSD-KKAVQQ 225 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~-~~~~~~ 225 (560)
.+-.++..|=-.|||+... +++..+.. ...|.++++++|.+..+..+++++...+..+. ...+..
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~-------------s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~ 319 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALA-------------TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDH 319 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHH-------------hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheee
Confidence 4678889999999999755 44443311 13478899999999999999999988765431 111222
Q ss_pred EecCCChhHHHHHHHcCC-CcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCC
Q 008602 226 LVGGANRSRQEEALRKNK-PAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPR 304 (560)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~-~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~ 304 (560)
.. |... .-.+.+|. .-|.+++- ...+..-=..++++|||||+-+-+ +.+..++-.+.
T Consensus 320 vk-Ge~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~-------- 377 (738)
T PHA03368 320 VK-GETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLN-------- 377 (738)
T ss_pred ec-CcEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHh--------
Confidence 22 2111 00111221 23555531 111112224689999999997544 44444544443
Q ss_pred CchhhhhhccCceEEEEEeeCC
Q 008602 305 EPKSALAMRAERQTIMVSATVP 326 (560)
Q Consensus 305 ~~~~~~~~~~~~~~l~~SAT~~ 326 (560)
..+.+++.+|.|-+
T Consensus 378 --------~~n~k~I~ISS~Ns 391 (738)
T PHA03368 378 --------QTNCKIIFVSSTNT 391 (738)
T ss_pred --------ccCccEEEEecCCC
Confidence 24678899988843
No 332
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.01 E-value=0.28 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=18.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..|++||.|+|||..+...+-.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999987666544
No 333
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.97 E-value=0.075 Score=47.44 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 140 AIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 140 ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+...+.+++++++.|++|+|||..+...+-..+
T Consensus 40 ~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 40 ALEFIENGENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp HH-S-SC--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 334455678999999999999998776666665
No 334
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.54 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=18.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
-.|++|+.|+|||..+...+-..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999999876655443
No 335
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.93 E-value=0.25 Score=50.78 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.3
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
..+++.||+|+|||..+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999875443
No 336
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.92 E-value=0.48 Score=48.81 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=74.8
Q ss_pred CCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCC---
Q 008602 155 YTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN--- 231 (560)
Q Consensus 155 ~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~--- 231 (560)
-++.||+..-++++.+.+.. +..|.++|.+-+.+-|.|++.++.. .....+..++|...
T Consensus 365 lvF~gse~~K~lA~rq~v~~--------------g~~PP~lIfVQs~eRak~L~~~L~~----~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS--------------GFKPPVLIFVQSKERAKQLFEELEI----YDNINVDVIHGERSQKQ 426 (593)
T ss_pred heeeecchhHHHHHHHHHhc--------------cCCCCeEEEEecHHHHHHHHHHhhh----ccCcceeeEecccchhH
Confidence 34788888888888887743 3456799999999999999988862 23334666666533
Q ss_pred hhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhh
Q 008602 232 RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDE 278 (560)
Q Consensus 232 ~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~ 278 (560)
......+++.|...++||| +++.++ ++|.++.+||.+++-.
T Consensus 427 rde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 427 RDETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 3455677888999999999 555554 8899999999987764
No 337
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.92 E-value=0.23 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=17.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
..|++||.|+|||..+...+-.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999987666543
No 338
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.91 E-value=0.19 Score=55.14 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=55.7
Q ss_pred HHHHhcCCCeEEEEEcChhhHHHHHHHHHHC----C-Cceee-ccCCCCHHHHHHHHHHhhcCCceEEEEecCc
Q 008602 406 RCVHALDAQTVIAFMNNTRQLKDAVFKLEAR----G-MKAAE-LHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473 (560)
Q Consensus 406 ~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~----~-~~~~~-lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~ 473 (560)
.+.-...+.++++.+|+..-+.+.++.|.+. + ..+.. +||.|+.++++.++++|.+|.++|||+|+.+
T Consensus 118 sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 118 SLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3444456789999999999888888888764 2 33333 9999999999999999999999999999754
No 339
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.97 Score=45.36 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=18.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++++.|+||+|||.+. ..++..+
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l 66 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEEL 66 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHH
Confidence 46999999999999884 4444544
No 340
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.83 E-value=0.16 Score=49.21 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=30.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
...++.||.|+|||..+-+.+-... ....+.+=+.-|..-...+..-|+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk----------------~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSK----------------KHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcC----------------CCceEEEEEeccccchHHHHHHHH
Confidence 4789999999999987655543322 223445556666555554444443
No 341
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.80 E-value=0.072 Score=55.66 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=68.6
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHCCC-------ceeeccCCCCHHHHHHHHHHhh----cCCceEEEEe--cCcccCCCC
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEARGM-------KAAELHGDLGKLARSTTLKKFK----NGEVRVLVTN--ELSARGLDV 479 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~~~-------~~~~lhg~~~~~~r~~v~~~F~----~g~~~iLvaT--~~~~~Gidi 479 (560)
++.+++|+++.+-+..+.+.+.+.|+ +..+.-..-+ -+.+++.|. .|.-.+|+|. .=+++||++
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 48899999999999999999887652 2222222212 345566664 4555677664 567899999
Q ss_pred CC--CCEEEEccCCCC-h-------------------------------hhhHhhhccccCCCCcceEEEEec
Q 008602 480 AE--CDLVVNLDLPTD-S-------------------------------IHYAHRAGRTGRLGRRGTVVSICE 518 (560)
Q Consensus 480 p~--v~~VI~~~~p~s-~-------------------------------~~y~Qr~GR~gR~g~~g~~~~l~~ 518 (560)
.| ++.||..++|.. . ....|.+|||-|..+.=-++.+++
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 86 788887777742 0 123688899999854434555554
No 342
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.79 E-value=0.33 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=18.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+-.|++||.|+|||.++-..+-.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999987666543
No 343
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.78 E-value=0.78 Score=47.57 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=36.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
|.-+++.|++|+|||...+..+.... ..+.+++++... +...|+..+...
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a----------------~~g~kvlYvs~E-Es~~qi~~ra~r 143 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLA----------------KNQMKVLYVSGE-ESLQQIKMRAIR 143 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH----------------hcCCcEEEEECc-CCHHHHHHHHHH
Confidence 56789999999999998887776654 234468888754 455677665544
No 344
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.76 E-value=0.36 Score=51.86 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHHHh
Q 008602 150 VVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~ 170 (560)
.|++|+.|+|||.++...+-.
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999987666543
No 345
>PRK06620 hypothetical protein; Validated
Probab=93.71 E-value=0.17 Score=46.63 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~ 165 (560)
..++++||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998644
No 346
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.49 Score=50.43 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=18.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..|++||.|+|||.++...+-.
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999997766544
No 347
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.12 Score=51.23 Aligned_cols=20 Identities=40% Similarity=0.413 Sum_probs=16.8
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
.++|+.||||||||+.+.-.
T Consensus 227 SNvLllGPtGsGKTllaqTL 246 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTL 246 (564)
T ss_pred ccEEEECCCCCchhHHHHHH
Confidence 57999999999999975443
No 348
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.63 E-value=0.25 Score=52.20 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=65.7
Q ss_pred cCCCeEEEEEcCh----hhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-cccCCCCCCCCEE
Q 008602 411 LDAQTVIAFMNNT----RQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-SARGLDVAECDLV 485 (560)
Q Consensus 411 ~~~~~~iif~~~~----~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-~~~Gidip~v~~V 485 (560)
..+.++..-+|+. ++...+.+.|...++++..+.|.+...+|.++++...+|+++++|.|-. +...++..+...|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 3478999999984 4555566777777999999999999999999999999999999999965 6689999999998
Q ss_pred E
Q 008602 486 V 486 (560)
Q Consensus 486 I 486 (560)
|
T Consensus 389 I 389 (677)
T COG1200 389 I 389 (677)
T ss_pred E
Confidence 8
No 349
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.62 E-value=0.75 Score=40.46 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=63.9
Q ss_pred EEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecC
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGG 229 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~ 229 (560)
+.|.-..|=|||.+++--++.++ ..|.+|+++.=.+-- -.+.+...+ ...+. +.....+
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~----------------G~G~rV~ivQFlKg~--~~~GE~~~l-~~l~~--~~~~~~g 64 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA----------------GHGMRVLIVQFLKGG--RYSGELKAL-KKLPN--VEIERFG 64 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH----------------CTT--EEEEESS--S--S--HHHHHH-GGGT----EEEE--
T ss_pred EEEEeCCCCCchHHHHHHHHHHH----------------hCCCEEEEEEEecCC--CCcCHHHHH-HhCCe--EEEEEcC
Confidence 45666779999999999999998 678889999866551 112222221 11111 1111111
Q ss_pred CChhHHHHHHHcCCCcEEEeCchHHHHHHHc--CCccCCCeeEEEEechhhhhccch--HHHHHHHHHHhccCCCCCCCC
Q 008602 230 ANRSRQEEALRKNKPAIVVGTPGRIAEISAA--GKLHTHGCRFLVLDEIDELLSFNF--REAMHRIVEHVGRRSGANPRE 305 (560)
Q Consensus 230 ~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~--~~~~~~~l~llIiDE~h~l~~~~~--~~~l~~i~~~~~~~~~~~~~~ 305 (560)
.........-. .+ .......+.. ..+.-..+++||+||+-..++.++ .+.+..+++.-
T Consensus 65 ~~f~~~~~~~~---~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~r---------- 126 (172)
T PF02572_consen 65 KGFVWRMNEEE---ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENR---------- 126 (172)
T ss_dssp TT----GGGHH---HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS----------
T ss_pred CcccccCCCcH---HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcC----------
Confidence 11100000000 00 0011111111 122335689999999998777665 34444554432
Q ss_pred chhhhhhccCceEEEEEeeCChHHHHHHHH
Q 008602 306 PKSALAMRAERQTIMVSATVPFSVIRAARS 335 (560)
Q Consensus 306 ~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~ 335 (560)
+....+|+..-.+++++...+..
T Consensus 127 -------p~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 127 -------PESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp --------TT-EEEEE-SS--HHHHHH-SE
T ss_pred -------CCCeEEEEECCCCCHHHHHhCCe
Confidence 24556777777777777776653
No 350
>PRK08840 replicative DNA helicase; Provisional
Probab=93.61 E-value=1.2 Score=46.22 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
|+.+-++.-...+.-+..|.-++|.|.+|.|||..++..+..... ..+..|++.+.- --..|+.
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~---------------~~~~~v~~fSlE-Ms~~ql~ 262 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAM---------------DQDKPVLIFSLE-MPAEQLM 262 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHH---------------hCCCeEEEEecc-CCHHHHH
Confidence 344444444444444555677889999999999987666655431 224457777654 3356666
Q ss_pred HHHHHH
Q 008602 209 REIKKL 214 (560)
Q Consensus 209 ~~~~~~ 214 (560)
.++-..
T Consensus 263 ~Rlla~ 268 (464)
T PRK08840 263 MRMLAS 268 (464)
T ss_pred HHHHHh
Confidence 665443
No 351
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.56 E-value=0.16 Score=50.75 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+.-++|+||||||||+. +..++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456799999999999987 45555554
No 352
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.54 E-value=0.42 Score=52.71 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=17.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
-.|++||.|+|||..+...+-.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3589999999999986655533
No 353
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.52 E-value=0.11 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=19.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..++++||||+|||+.....+....
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999998766555443
No 354
>PRK08006 replicative DNA helicase; Provisional
Probab=93.47 E-value=1.4 Score=45.88 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=77.6
Q ss_pred HhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCC
Q 008602 141 IPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDK 220 (560)
Q Consensus 141 i~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~ 220 (560)
+.-+..|.-++|.|.+|.|||..++..+..... ..|..|+|.+.- --..|+..++-........
T Consensus 218 ~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~---------------~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~ 281 (471)
T PRK08006 218 TAGLQPSDLIIVAARPSMGKTTFAMNLCENAAM---------------LQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQ 281 (471)
T ss_pred hcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------------hcCCeEEEEecc-CCHHHHHHHHHHHhcCCCH
Confidence 333444567889999999999987777666541 124457777653 3456666665544332221
Q ss_pred ceEEEEecCCChhHHHHHHHc------CCCcEEEe-----CchHHHHHHHcCCccCCCeeEEEEechhhhhcc----chH
Q 008602 221 KAVQQLVGGANRSRQEEALRK------NKPAIVVG-----TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF----NFR 285 (560)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~------~~~~IlI~-----Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~----~~~ 285 (560)
..+..+.-....+..+.. ....+.|- |+..+......-......+++||||=.|.|-.. +..
T Consensus 282 ---~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~ 358 (471)
T PRK08006 282 ---TRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRT 358 (471)
T ss_pred ---HHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcH
Confidence 112222222223322111 12235553 333333322211111235799999999976422 233
Q ss_pred HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEee
Q 008602 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT 324 (560)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT 324 (560)
..+..|.+.+. .++..-++.++++|-.
T Consensus 359 ~ei~~isr~LK------------~lAkel~ipVi~LsQL 385 (471)
T PRK08006 359 LEIAEISRSLK------------ALAKELQVPVVALSQL 385 (471)
T ss_pred HHHHHHHHHHH------------HHHHHhCCeEEEEEec
Confidence 34455544432 2233456677777743
No 355
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.43 E-value=0.77 Score=47.56 Aligned_cols=90 Identities=21% Similarity=0.172 Sum_probs=47.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEE-EEccC-HHHHHHHHHHHHHHhCCCCCceEE
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAV-IVAPS-RELGMQIVREIKKLLGPSDKKAVQ 224 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vl-il~Pt-~~La~Q~~~~~~~~~~~~~~~~~~ 224 (560)
+..++++||||+|||++....+...... ..+.++. +-+-+ |.-+.++...+.+..+. . +.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--------------~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV---p-v~ 317 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR--------------HGASKVALLTTDSYRIGGHEQLRIYGKILGV---P-VH 317 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh--------------cCCCeEEEEeCCccchhHHHHHHHHHHHhCC---C-ee
Confidence 3467899999999999876666444311 1112333 33322 44454555555554431 1 22
Q ss_pred EEecCCChhHHHHHHHcCCCcEEEeCchHHH
Q 008602 225 QLVGGANRSRQEEALRKNKPAIVVGTPGRIA 255 (560)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~ 255 (560)
......+.......+... ..++|-|+|+..
T Consensus 318 ~~~~~~Dl~~aL~~L~d~-d~VLIDTaGr~~ 347 (484)
T PRK06995 318 AVKDAADLRLALSELRNK-HIVLIDTIGMSQ 347 (484)
T ss_pred ccCCchhHHHHHHhccCC-CeEEeCCCCcCh
Confidence 222333333334444333 368999999654
No 356
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=0.31 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=17.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
-.|++||.|+|||.++...+-.
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999987766543
No 357
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.43 E-value=0.54 Score=51.58 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=16.8
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
.+++++||+|+|||..+...+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999998754443
No 358
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.40 E-value=0.071 Score=49.79 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=37.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCC-CeeEEEEccCHHHHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKT-DIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
|..++|.|++|+|||..++..+...+ .. |..+++++- .+-..++.+.++.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~----------------~~~ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGL----------------KNFGEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH----------------HHHT--EEEEES-SS-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhh----------------hhcCCcEEEEEe-cCCHHHHHHHHHHc
Confidence 47899999999999999999888877 44 566888774 34456677776643
No 359
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.73 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
-.|++|+.|+|||..+...+-.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999987665433
No 360
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.30 E-value=0.34 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=17.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
-.|++||.|+|||..+...+-.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999987665543
No 361
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.25 E-value=0.35 Score=48.86 Aligned_cols=144 Identities=15% Similarity=0.071 Sum_probs=81.2
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.+...|.+|.=..-.|.. .|.|=.|||||.+.++-+...-. ....-++++.+-|+.|+.++.+.+
T Consensus 162 nfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~--------------knPd~~I~~Tfftk~L~s~~r~lv 226 (660)
T COG3972 162 NFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHS--------------KNPDSRIAFTFFTKILASTMRTLV 226 (660)
T ss_pred cccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhc--------------CCCCceEEEEeehHHHHHHHHHHH
Confidence 345667776555555655 78899999999986665544332 133457999999999999988887
Q ss_pred HHHhC-------CCCCceEEEEecCCChhHHHHHHH--cCCCcEEEeCchH----HHHHHHcCCccCCCeeEEEEechhh
Q 008602 212 KKLLG-------PSDKKAVQQLVGGANRSRQEEALR--KNKPAIVVGTPGR----IAEISAAGKLHTHGCRFLVLDEIDE 278 (560)
Q Consensus 212 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~IlI~Tp~~----l~~~l~~~~~~~~~l~llIiDE~h~ 278 (560)
.+++- .++..-++...||......-.... .+...+-++--+. +..-+-...-..+-+++|.|||.+.
T Consensus 227 ~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QD 306 (660)
T COG3972 227 PEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQD 306 (660)
T ss_pred HHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEeccccc
Confidence 77642 222333444455544432221111 1111233321111 1111111122255689999999997
Q ss_pred hhccchHHHHHHH
Q 008602 279 LLSFNFREAMHRI 291 (560)
Q Consensus 279 l~~~~~~~~l~~i 291 (560)
+..+|.+.+..+
T Consensus 307 -FP~~F~~Lcf~~ 318 (660)
T COG3972 307 -FPQSFIDLCFMV 318 (660)
T ss_pred -CCHHHHHHHHHH
Confidence 665666555443
No 362
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.23 E-value=2.2 Score=42.80 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=31.5
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHH
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSV 329 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~ 329 (560)
...+|.+||.|- .|..-.-.+..+++.+- ..+.-++..|-++|.++
T Consensus 127 ~~~lLcfDEF~V-~DiaDAmil~rLf~~l~----------------~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 127 ESRLLCFDEFQV-TDIADAMILKRLFEALF----------------KRGVVLVATSNRPPEDL 172 (362)
T ss_pred cCCEEEEeeeec-cchhHHHHHHHHHHHHH----------------HCCCEEEecCCCChHHH
Confidence 346999999994 56555556677776663 25567778788776544
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.19 E-value=0.48 Score=51.29 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=35.4
Q ss_pred CCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC
Q 008602 265 THGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326 (560)
Q Consensus 265 ~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~ 326 (560)
..+.-++|+|+-|++.+......+..++++.+ ++.+.++.|-+-|
T Consensus 127 ~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P-----------------~~l~lvv~SR~rP 171 (894)
T COG2909 127 YEGPLYLVLDDYHLISDPALHEALRFLLKHAP-----------------ENLTLVVTSRSRP 171 (894)
T ss_pred hcCceEEEeccccccCcccHHHHHHHHHHhCC-----------------CCeEEEEEeccCC
Confidence 34456999999999888888888999988875 6677777776643
No 364
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.15 E-value=0.15 Score=48.39 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=34.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
++.++++.|++|+|||..+.......+ ..|..| +.+++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~----------------~~g~sv-~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL----------------KAGISV-LFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH----------------HcCCeE-EEEEHHHHHHHHHHHHh
Confidence 578999999999999998655554444 224444 44677777777665554
No 365
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.14 E-value=0.66 Score=49.24 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=18.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..|++||.|+|||..+...+-.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999987666543
No 366
>PHA00012 I assembly protein
Probab=93.14 E-value=0.85 Score=44.08 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..+|+|..|+|||+.++.-+...+
T Consensus 3 iylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 3 VYVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 358999999999999988888777
No 367
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.14 E-value=0.26 Score=47.14 Aligned_cols=44 Identities=30% Similarity=0.428 Sum_probs=29.5
Q ss_pred HHhCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 125 LEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+...|+ .+.|.+.+..++.. ..++|+|+||||||.. +..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 445555 45677777655542 3589999999999987 44455555
No 368
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.08 E-value=2 Score=39.93 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~ 165 (560)
+++|..||+|+|||..+-
T Consensus 152 knVLFyGppGTGKTm~Ak 169 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAK 169 (368)
T ss_pred ceeEEECCCCccHHHHHH
Confidence 799999999999998743
No 369
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.07 E-value=1.1 Score=43.96 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=31.6
Q ss_pred CCChHHHHHHHhhhhc----C---CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 131 NVPTEVQSAAIPSILK----N---HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~----~---~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..++|+|..++..+.. + +-.|+.||.|+||+..+...+-..+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 3568899999887664 3 3589999999999988766554443
No 370
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.05 E-value=0.28 Score=50.84 Aligned_cols=70 Identities=24% Similarity=0.231 Sum_probs=48.7
Q ss_pred hHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 134 ~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
.+-|.++|.. -.+.-.+|.|..|||||.+++.=+.-.+...... -.+..++|+.|.+....-+.+.+-+
T Consensus 214 QkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~----------l~~k~vlvl~PN~vFleYis~VLPe 282 (747)
T COG3973 214 QKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP----------LQAKPVLVLGPNRVFLEYISRVLPE 282 (747)
T ss_pred hHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccc----------cccCceEEEcCcHHHHHHHHHhchh
Confidence 3445555442 2356789999999999999988776666432221 2344599999999998888777765
Q ss_pred H
Q 008602 214 L 214 (560)
Q Consensus 214 ~ 214 (560)
+
T Consensus 283 L 283 (747)
T COG3973 283 L 283 (747)
T ss_pred h
Confidence 4
No 371
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.01 E-value=0.26 Score=48.55 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+.++++.|+||+|||..+...+-..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~ 208 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL 208 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999987554444443
No 372
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.00 E-value=0.26 Score=53.65 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=64.5
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-cccCCCCCCCCEEE
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-SARGLDVAECDLVV 486 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-~~~Gidip~v~~VI 486 (560)
.+.++++.+|+..-+.+.++.+++. ++++..+||+++..++...++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4679999999999888887777653 789999999999999999999999999999999964 45567778888887
No 373
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.89 E-value=0.26 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..++|+||||||||+. +..++..+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i 173 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHC 173 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 34689999999999987 45566655
No 374
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.87 E-value=0.35 Score=48.48 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=19.2
Q ss_pred hcCCcEEEEcCCCchHHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~ 167 (560)
-.+..+++.|+||+||++.+..-
T Consensus 99 p~~~~vLi~GetGtGKel~A~~i 121 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLI 121 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHH
Confidence 45789999999999999986543
No 375
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.84 E-value=0.84 Score=43.59 Aligned_cols=149 Identities=18% Similarity=0.110 Sum_probs=79.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEE
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 224 (560)
..|.-++|.|.+|.|||..++..+...+. ..+..|++++.-- -..++..++-.........
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~---------------~~~~~vly~SlEm-~~~~l~~R~la~~s~v~~~--- 77 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAAL---------------NGGYPVLYFSLEM-SEEELAARLLARLSGVPYN--- 77 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHH---------------TTSSEEEEEESSS--HHHHHHHHHHHHHTSTHH---
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHH---------------hcCCeEEEEcCCC-CHHHHHHHHHHHhhcchhh---
Confidence 34567899999999999998888888762 2246688888642 2344444444433222211
Q ss_pred EEecCCChhHHHH-------HHHcCCCcEEEeCch----HHHHHHHcCCccCCCeeEEEEechhhhhcc----chHHHHH
Q 008602 225 QLVGGANRSRQEE-------ALRKNKPAIVVGTPG----RIAEISAAGKLHTHGCRFLVLDEIDELLSF----NFREAMH 289 (560)
Q Consensus 225 ~~~~~~~~~~~~~-------~l~~~~~~IlI~Tp~----~l~~~l~~~~~~~~~l~llIiDE~h~l~~~----~~~~~l~ 289 (560)
.+..+.-....+. .+.... -.+..+|. .+.............+++||||=.|.|-.. +....+.
T Consensus 78 ~i~~g~l~~~e~~~~~~~~~~l~~~~-l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~ 156 (259)
T PF03796_consen 78 KIRSGDLSDEEFERLQAAAEKLSDLP-LYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIG 156 (259)
T ss_dssp HHHCCGCHHHHHHHHHHHHHHHHTSE-EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHH
T ss_pred hhhccccCHHHHHHHHHHHHHHhhCc-EEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHH
Confidence 1122222222222 232322 13334433 444433322223367899999999986553 3445555
Q ss_pred HHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeC
Q 008602 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV 325 (560)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 325 (560)
.+...+. ..+...++.++++|..-
T Consensus 157 ~i~~~Lk------------~lA~~~~i~vi~~sQln 180 (259)
T PF03796_consen 157 EISRELK------------ALAKELNIPVIALSQLN 180 (259)
T ss_dssp HHHHHHH------------HHHHHHTSEEEEEEEBS
T ss_pred HHHHHHH------------HHHHHcCCeEEEccccC
Confidence 5544442 22334567788777764
No 376
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.83 E-value=1.2 Score=41.28 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=20.7
Q ss_pred hhhcCC-cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 143 SILKNH-DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 143 ~i~~~~-~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+..++ -+.++|+.|||||...- ++....
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 344455 67899999999998855 555544
No 377
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.79 E-value=0.87 Score=46.52 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=18.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+..|++||.|+|||.++...+-..
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHh
Confidence 348899999999999876665443
No 378
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.79 E-value=0.6 Score=48.82 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=28.0
Q ss_pred hccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCC
Q 008602 501 AGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTE 543 (560)
Q Consensus 501 ~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~ 543 (560)
.-++-|-...|..++.+.......+..=.+.+...|+..++.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (486)
T PRK14953 407 LKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEE 449 (486)
T ss_pred HhhhhhhhhcCceEEEecccHHHHHHHHHHHHHHhCCCCCchh
Confidence 3456666677889998877666666555555666666555544
No 379
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.76 E-value=0.32 Score=43.82 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=28.1
Q ss_pred ChHHHHHHHhhhh-cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 133 PTEVQSAAIPSIL-KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 133 ~~~~Q~~ai~~i~-~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++.|...+.... .+..++++|+||||||... ..++..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 3566777776644 4788999999999999863 4444444
No 380
>PRK13764 ATPase; Provisional
Probab=92.75 E-value=0.85 Score=48.58 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=20.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++.++++|+||||||+. +.+++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 357899999999999986 45565555
No 381
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.67 E-value=0.97 Score=48.68 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.1
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
+..|++||.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346999999999999866655
No 382
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.65 E-value=1.2 Score=46.21 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=53.8
Q ss_pred CCCCChHHHHHHHhhhhc------C----CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEc
Q 008602 129 GFNVPTEVQSAAIPSILK------N----HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA 198 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~------~----~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 198 (560)
++ .+-|+|.-++-.+.. + +..+|..|-+-|||..+...+....+. ....+.++.|++
T Consensus 59 p~-~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~------------~~~~~~~~~i~A 125 (546)
T COG4626 59 PE-SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLL------------NWRSGAGIYILA 125 (546)
T ss_pred cc-ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHh------------hhhcCCcEEEEe
Confidence 44 678999999998883 1 357888999999998755333322211 124567799999
Q ss_pred cCHHHHHHHHHHHHHHhC
Q 008602 199 PSRELGMQIVREIKKLLG 216 (560)
Q Consensus 199 Pt~~La~Q~~~~~~~~~~ 216 (560)
|+.+-+.+.+...+..+.
T Consensus 126 ~s~~qa~~~F~~ar~mv~ 143 (546)
T COG4626 126 PSVEQAANSFNPARDMVK 143 (546)
T ss_pred ccHHHHHHhhHHHHHHHH
Confidence 999998888888776544
No 383
>PHA02542 41 41 helicase; Provisional
Probab=92.64 E-value=0.96 Score=47.08 Aligned_cols=156 Identities=14% Similarity=0.101 Sum_probs=76.7
Q ss_pred HHhhhh-c----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 140 AIPSIL-K----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 140 ai~~i~-~----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
.++.+. . |.-++|.|.+|.|||..++..+.... ..|..|+++.-- .-..|+..++...
T Consensus 178 ~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a----------------~~g~~Vl~fSLE-M~~~ql~~Rl~a~ 240 (473)
T PHA02542 178 ILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYL----------------QQGYNVLYISME-MAEEVIAKRIDAN 240 (473)
T ss_pred HHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHH----------------hcCCcEEEEecc-CCHHHHHHHHHHH
Confidence 555555 2 34578899999999999888777665 234557776522 2235555555443
Q ss_pred hCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEE-----eCchHHHHHHHcCCccC-CCeeEEEEechhhhhcc---
Q 008602 215 LGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVV-----GTPGRIAEISAAGKLHT-HGCRFLVLDEIDELLSF--- 282 (560)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI-----~Tp~~l~~~l~~~~~~~-~~l~llIiDE~h~l~~~--- 282 (560)
....+...+.. ........ ....+..+...|.+ .|+..+...++.-.... ..+++||||=.+.|.+.
T Consensus 241 ~~~i~~~~l~~-l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~ 319 (473)
T PHA02542 241 LLDVSLDDIDD-LSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLR 319 (473)
T ss_pred HcCCCHHHHhh-cCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCccc
Confidence 22222211111 11111111 11222333322222 23334443332211111 13789999999976422
Q ss_pred ----chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeC
Q 008602 283 ----NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV 325 (560)
Q Consensus 283 ----~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 325 (560)
+....+..|.+.+. .++..-++.++++|-.-
T Consensus 320 ~~~~nr~~ei~~Isr~LK------------~lAkel~vpVi~lsQLn 354 (473)
T PHA02542 320 VSSENSYTYVKAIAEELR------------GLAVEHDVVVWTAAQTT 354 (473)
T ss_pred CCCCChHHHHHHHHHHHH------------HHHHHhCCeEEEEEeeC
Confidence 23344444544432 12223456777777663
No 384
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.59 E-value=1.6 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.053 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~ 169 (560)
+..+.++|+||+|||+.....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999998654443
No 385
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.58 E-value=0.4 Score=40.94 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHHHhh
Q 008602 150 VVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~ 171 (560)
.++.|+.|||||.+|.......
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~ 26 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPL 26 (187)
T ss_pred EEEecCCCCCceeeeeccchhh
Confidence 4788999999999987665544
No 386
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.51 E-value=0.27 Score=51.34 Aligned_cols=44 Identities=30% Similarity=0.472 Sum_probs=30.6
Q ss_pred HHhCCCCCChHHHHHHHhhhhcC-C-cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 125 LEREGFNVPTEVQSAAIPSILKN-H-DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~~-~-~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+...|| .+.|.+.+..+... + -++++||||||||.. +..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 445555 57777777776654 2 368999999999987 34455555
No 387
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.50 E-value=0.73 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=17.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+-.|++||.|+|||.++...+-.
T Consensus 41 HAYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34689999999999987665533
No 388
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.42 E-value=1.7 Score=48.10 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~ 169 (560)
..+.++.||+|+|||..+-..+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 36899999999999998655443
No 389
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.41 E-value=1.6 Score=43.03 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.2
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++++|+.|+|||..+...+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998754443
No 390
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.40 E-value=2.3 Score=47.33 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=18.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
.+.++.||+|+|||..+-..+..
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999986554443
No 391
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.39 E-value=0.53 Score=46.24 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=27.5
Q ss_pred hHHHHHHHhhhh----cC---CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 134 TEVQSAAIPSIL----KN---HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 134 ~~~Q~~ai~~i~----~~---~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+|||...+..+. ++ +-.|+.||.|.||+..+...+-..+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 566766666555 33 4578999999999998766664433
No 392
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.34 E-value=2.1 Score=37.86 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.1
Q ss_pred EEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccC
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPS 200 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt 200 (560)
++|.-..|-|||++++-.++.++ +.|.+|.|+.=-
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~----------------GhG~rv~vvQFi 65 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL----------------GHGLRVGVVQFI 65 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh----------------cCCCEEEEEEEe
Confidence 56777788999999999999998 668888888743
No 393
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.33 E-value=1.8 Score=37.88 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..|+.||.|+||+..+...+-..+
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4579999999999998776666554
No 394
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.32 E-value=0.34 Score=55.93 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChh---HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS---RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.+++|++|+++-+..+++.+.+.+... .+..+.|+.+.. .....+.+|..+|+|||. .+.+ .+++.
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~---~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-Iier-----GIDIP 878 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEA---RIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIET-----GIDIP 878 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCC---cEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-hhhc-----ccccc
Confidence 35689999999999999999998875432 355667776554 344667789999999993 3333 67889
Q ss_pred CeeEEEEechhh
Q 008602 267 GCRFLVLDEIDE 278 (560)
Q Consensus 267 ~l~llIiDE~h~ 278 (560)
++++||++.+++
T Consensus 879 ~v~~VIi~~ad~ 890 (1147)
T PRK10689 879 TANTIIIERADH 890 (1147)
T ss_pred cCCEEEEecCCC
Confidence 999999999986
No 395
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.30 E-value=0.87 Score=44.65 Aligned_cols=40 Identities=28% Similarity=0.229 Sum_probs=29.6
Q ss_pred CChHHHHHH-HhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 132 VPTEVQSAA-IPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 132 ~~~~~Q~~a-i~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+.+.|..- +-++..++++++||+||||||.. +.+++..+
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I 167 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI 167 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC
Confidence 345555544 45566689999999999999976 67776666
No 396
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.30 E-value=1.3 Score=44.97 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~ 166 (560)
+.++++||+|+|||+.+-.
T Consensus 166 ~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CceEEECCCCCChHHHHHH
Confidence 5799999999999987433
No 397
>PRK04328 hypothetical protein; Provisional
Probab=92.27 E-value=0.21 Score=47.32 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=37.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
.|..++|.|++|+|||..++..+...+ ..|..++++. +.+-..++.+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~----------------~~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL----------------QMGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH----------------hcCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 357789999999999999888888876 3455577766 444556666665543
No 398
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.25 E-value=0.45 Score=44.34 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
|.-+.|.|++|+|||..++..+....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 57789999999999998887776654
No 399
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.22 E-value=1 Score=40.56 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=18.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..|+.||.|+|||..+...+-...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4589999999999988665554433
No 400
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=1.2 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=17.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
-.|++||.|+|||.++...+-.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999987665433
No 401
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.17 E-value=0.26 Score=46.07 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=36.4
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
+..+..+++.|++|+|||..++..+...+ ..|.++++++. .+-..+..+.+..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~----------------~~g~~~~yi~~-e~~~~~~~~~~~~ 73 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL----------------QNGYSVSYVST-QLTTTEFIKQMMS 73 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH----------------hCCCcEEEEeC-CCCHHHHHHHHHH
Confidence 34467899999999999998777777655 33456788774 3444555555543
No 402
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.11 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
..++++.||||||||+.+...+
T Consensus 97 KSNILLiGPTGsGKTlLAqTLA 118 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLA 118 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999765443
No 403
>PHA00350 putative assembly protein
Probab=92.13 E-value=1.4 Score=44.40 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.1
Q ss_pred cEEEEcCCCchHHHHHHH-HHHhhh
Q 008602 149 DVVIQSYTGSGKTLAYLL-PILSKV 172 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~-~i~~~~ 172 (560)
-.++.|..|||||+-++. -++.++
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHH
Confidence 358999999999998886 466565
No 404
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=92.08 E-value=2.9 Score=40.45 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=80.5
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
..|.-++|.+|+.+..+|.+..+++-+..... ...........+...++++|..+|+|+| .++++ .+-+.++
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i--~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILER-GVTfp~v 374 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKKLPKETI--ASVHSEDQHRKEKVEAFRDGKITLLITT-----TILER-GVTFPNV 374 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhhCCccce--eeeeccCccHHHHHHHHHcCceEEEEEe-----ehhhc-ccccccc
Confidence 45677999999999999999999776544322 2233345667788899999999999999 34444 4668899
Q ss_pred eEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHH
Q 008602 269 RFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVI 330 (560)
Q Consensus 269 ~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~ 330 (560)
+..|++-.|+++.. ..+-.|-.+..+... ++.-.+++|=.-.+.+..
T Consensus 375 dV~Vlgaeh~vfTe---saLVQIaGRvGRs~~------------~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 375 DVFVLGAEHRVFTE---SALVQIAGRVGRSLE------------RPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred eEEEecCCcccccH---HHHHHHhhhccCCCc------------CCCCcEEEEeccchHHHH
Confidence 99999999987763 334444444433211 244466766555444433
No 405
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.06 E-value=0.43 Score=48.83 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=41.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH-HHHHHHHHHHHHhCCC
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE-LGMQIVREIKKLLGPS 218 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~-La~Q~~~~~~~~~~~~ 218 (560)
-.++.|..|||||.+....++..+... ..+.+++|+-|+.. |..-++..+...+...
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-------------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~ 60 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-------------KKQQNILAARKVQNSIRDSVFKDIENLLSIE 60 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-------------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHc
Confidence 467899999999999887777766321 14567999999887 5666777777655433
No 406
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.04 E-value=0.37 Score=54.10 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=105.5
Q ss_pred CCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCC
Q 008602 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184 (560)
Q Consensus 105 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~ 184 (560)
.-.....|.++||= +++.-+++|.. |.+.+..+..+-|+|=-..|=-=.|+-..+.=+..+.....+......
T Consensus 707 LL~kdv~FkdLGLl--IIDEEqRFGVk-----~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p 779 (1139)
T COG1197 707 LLSKDVKFKDLGLL--IIDEEQRFGVK-----HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP 779 (1139)
T ss_pred hhCCCcEEecCCeE--EEechhhcCcc-----HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc
Confidence 33445557777642 23334566664 888888888888888888888888875433333222111111000000
Q ss_pred -----------------CCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEE
Q 008602 185 -----------------ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIV 247 (560)
Q Consensus 185 -----------------~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Il 247 (560)
...-..|.||.++.|..+-..+.+..++++.....+.+.+.-++..+....+..+.++..||+
T Consensus 780 V~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVL 859 (1139)
T COG1197 780 VKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVL 859 (1139)
T ss_pred eEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEE
Confidence 011256899999999999999999999998765543333333334444556677788999999
Q ss_pred EeCchHHHHHHHcCCccCCCeeEEEEechhhhhcc
Q 008602 248 VGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF 282 (560)
Q Consensus 248 I~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~ 282 (560)
|||. +. ...++..+...||||-||+ ++.
T Consensus 860 v~TT-----II-EtGIDIPnANTiIIe~AD~-fGL 887 (1139)
T COG1197 860 VCTT-----II-ETGIDIPNANTIIIERADK-FGL 887 (1139)
T ss_pred EEee-----ee-ecCcCCCCCceEEEecccc-ccH
Confidence 9993 22 2356788889999999998 553
No 407
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.04 E-value=0.49 Score=53.41 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=64.9
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec-CcccCCCCCCCCEEE
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE-LSARGLDVAECDLVV 486 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~-~~~~Gidip~v~~VI 486 (560)
.+.+++|.+|+..-+.+.+..+++. ++++..++|..+..++.++++.+.+|+.+|+|+|. .+...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4679999999999999988887763 56788899999999999999999999999999996 455677888888888
No 408
>PRK10436 hypothetical protein; Provisional
Probab=92.03 E-value=0.33 Score=50.23 Aligned_cols=44 Identities=32% Similarity=0.418 Sum_probs=29.5
Q ss_pred HHhCCCCCChHHHHHHHhhhhc--CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 125 LEREGFNVPTEVQSAAIPSILK--NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~--~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+...|+ .+.|.+.+..+.. +.-+|++||||||||+.. ..++..+
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 444555 4666666765554 345889999999999873 4555555
No 409
>PF05729 NACHT: NACHT domain
Probab=91.98 E-value=0.94 Score=39.49 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=17.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
-++|.|+.|+|||......+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999998765444443
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.96 E-value=0.44 Score=49.55 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
.+..+.++|++|+|||..+...+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999865555443
No 411
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.93 E-value=1.8 Score=42.96 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=28.2
Q ss_pred hHHHHHHHhhhhc--C---CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 134 TEVQSAAIPSILK--N---HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 134 ~~~Q~~ai~~i~~--~---~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+|||...+..+.. + +-.|+.||.|.||+..+...+-..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5777777777664 2 467899999999999876665443
No 412
>PRK07004 replicative DNA helicase; Provisional
Probab=91.88 E-value=1.3 Score=46.19 Aligned_cols=148 Identities=11% Similarity=0.108 Sum_probs=73.8
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceE
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 223 (560)
+..|.-++|.|.+|+|||..++..+..... ..|..+++.+. -.-..|+..++-......+.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~---------------~~~~~v~~fSl-EM~~~ql~~R~la~~~~v~~--- 270 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAV---------------EYGLPVAVFSM-EMPGTQLAMRMLGSVGRLDQ--- 270 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHH---------------HcCCeEEEEeC-CCCHHHHHHHHHHhhcCCCH---
Confidence 344567899999999999987766655431 22444666653 23345555555433222111
Q ss_pred EEEecCCChhHHHH-------HHHcCCCcEEEe-----CchHHHHHHHcCCccCCCeeEEEEechhhhhcc----chHHH
Q 008602 224 QQLVGGANRSRQEE-------ALRKNKPAIVVG-----TPGRIAEISAAGKLHTHGCRFLVLDEIDELLSF----NFREA 287 (560)
Q Consensus 224 ~~~~~~~~~~~~~~-------~l~~~~~~IlI~-----Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~----~~~~~ 287 (560)
..+..|.-....+. .+.. . .+.|. |+..+......-......+++||||=.|.|... +....
T Consensus 271 ~~i~~g~l~~~e~~~~~~a~~~l~~-~-~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~e 348 (460)
T PRK07004 271 HRMRTGRLTDEDWPKLTHAVQKMSE-A-QLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATE 348 (460)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhc-C-CEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHH
Confidence 11222222223332 2322 2 35553 333333322111111235789999999976532 23334
Q ss_pred HHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEee
Q 008602 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT 324 (560)
Q Consensus 288 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT 324 (560)
+..|.+.+. .++..-++.++++|--
T Consensus 349 i~~Isr~LK------------~lAkel~ipVi~lsQL 373 (460)
T PRK07004 349 ISEISRSLK------------SLAKELDVPVIALSQL 373 (460)
T ss_pred HHHHHHHHH------------HHHHHhCCeEEEEecc
Confidence 455544442 2233356677777643
No 413
>PRK09183 transposase/IS protein; Provisional
Probab=91.81 E-value=0.2 Score=47.72 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=22.9
Q ss_pred hhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 143 SILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 143 ~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+..+.++++.||+|+|||..+........
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356688999999999999987665544433
No 414
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=91.80 E-value=1.8 Score=45.78 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~ 165 (560)
+.+|+.||+|+|||+.+-
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999998743
No 415
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=1.4 Score=48.00 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=64.4
Q ss_pred HHHHHHhhhhc-------C--------CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccC
Q 008602 136 VQSAAIPSILK-------N--------HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPS 200 (560)
Q Consensus 136 ~Q~~ai~~i~~-------~--------~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt 200 (560)
-|..|+.++.+ | ..++..||||.|||..+-..+-... .+...+|-...
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf-----------------g~e~aliR~DM 557 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF-----------------GDEQALIRIDM 557 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc-----------------CCCccceeech
Confidence 47777776654 1 3689999999999998655544332 22346766666
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhh
Q 008602 201 RELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 201 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~ 280 (560)
.+-.+. ..++++.+..++. |++--||.-... .++ +-+++|.+||+..
T Consensus 558 SEy~Ek--HsVSrLIGaPPGY-VGyeeGG~LTEa-----------------------VRr-----~PySViLlDEIEK-- 604 (786)
T COG0542 558 SEYMEK--HSVSRLIGAPPGY-VGYEEGGQLTEA-----------------------VRR-----KPYSVILLDEIEK-- 604 (786)
T ss_pred HHHHHH--HHHHHHhCCCCCC-ceeccccchhHh-----------------------hhc-----CCCeEEEechhhh--
Confidence 554333 3566666666555 555445422211 111 1257999999986
Q ss_pred ccchHHHHHHHHHHhc
Q 008602 281 SFNFREAMHRIVEHVG 296 (560)
Q Consensus 281 ~~~~~~~l~~i~~~~~ 296 (560)
.+...+.-++.-+.
T Consensus 605 --AHpdV~nilLQVlD 618 (786)
T COG0542 605 --AHPDVFNLLLQVLD 618 (786)
T ss_pred --cCHHHHHHHHHHhc
Confidence 34455555555554
No 416
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.75 E-value=2.1 Score=42.28 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=28.6
Q ss_pred hHHHHHHHhhhhcC-----CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 134 TEVQSAAIPSILKN-----HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 134 ~~~Q~~ai~~i~~~-----~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+|||+..+..+... +-.|+.||.|.|||..+...+-..
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 57788888777642 358899999999999876665443
No 417
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.74 E-value=2.2 Score=44.30 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=35.8
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
+..|.-++|.|++|+|||..++..+..... ..|..+++++.- .-..|+.+++...
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~---------------~~g~~vl~~SlE-m~~~~i~~R~~~~ 246 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAI---------------KEGKPVAFFSLE-MSAEQLAMRMLSS 246 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHH---------------hCCCeEEEEeCc-CCHHHHHHHHHHH
Confidence 334567899999999999988777766541 224457776543 3455665555444
No 418
>PRK08760 replicative DNA helicase; Provisional
Probab=91.72 E-value=3 Score=43.64 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=60.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEE
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQ 224 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~ 224 (560)
..|.-++|.|.+|.|||..++..+..... ..|..|++.+.- .-..|+..++...........
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~---------------~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~-- 288 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAI---------------KSKKGVAVFSME-MSASQLAMRLISSNGRINAQR-- 288 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHH---------------hcCCceEEEecc-CCHHHHHHHHHHhhCCCcHHH--
Confidence 33566889999999999988877766541 224457776543 334667766655433222211
Q ss_pred EEecCCChhHHH-------HHHHcCCCcEEEe-----CchHHHHHHHcCCccCCCeeEEEEechhhhh
Q 008602 225 QLVGGANRSRQE-------EALRKNKPAIVVG-----TPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 225 ~~~~~~~~~~~~-------~~l~~~~~~IlI~-----Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~ 280 (560)
+..|.-....+ ..+... .+.|. |++.+......-.. -..+++||||=.+.|.
T Consensus 289 -i~~g~l~~~e~~~~~~a~~~l~~~--~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 289 -LRTGALEDEDWARVTGAIKMLKET--KIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred -HhcCCCCHHHHHHHHHHHHHHhcC--CEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 22222222222 222222 25443 33344332221111 1347899999999764
No 419
>PRK05748 replicative DNA helicase; Provisional
Probab=91.70 E-value=2 Score=44.67 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=75.3
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceE
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 223 (560)
+..|.-++|.|.+|.|||..++..+..... ..|..+++++. -.-..|+..++..........
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~---------------~~g~~v~~fSl-Ems~~~l~~R~l~~~~~v~~~-- 261 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVAT---------------KTDKNVAIFSL-EMGAESLVMRMLCAEGNIDAQ-- 261 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHH---------------hCCCeEEEEeC-CCCHHHHHHHHHHHhcCCCHH--
Confidence 344567899999999999988877766441 22445666653 344566766664433322211
Q ss_pred EEEecCCChhHHHH-------HHHcCCCcEEEe-Cc----hHHHHHHHcCCccCCCeeEEEEechhhhhcc-----chHH
Q 008602 224 QQLVGGANRSRQEE-------ALRKNKPAIVVG-TP----GRIAEISAAGKLHTHGCRFLVLDEIDELLSF-----NFRE 286 (560)
Q Consensus 224 ~~~~~~~~~~~~~~-------~l~~~~~~IlI~-Tp----~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~-----~~~~ 286 (560)
.+..+.-....+. .+.+ . .+.|. +| ..+......-.....++++||||=.|.|-.. ....
T Consensus 262 -~i~~~~l~~~e~~~~~~a~~~l~~-~-~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~ 338 (448)
T PRK05748 262 -RLRTGQLTDDDWPKLTIAMGSLSD-A-PIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQ 338 (448)
T ss_pred -HhhcCCCCHHHHHHHHHHHHHHhc-C-CEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHH
Confidence 1122222222222 2222 2 25443 33 3343322211111125789999999976421 1223
Q ss_pred HHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeC
Q 008602 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV 325 (560)
Q Consensus 287 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 325 (560)
.+..+.+.+. .++..-++.++++|-.-
T Consensus 339 ~i~~i~~~LK------------~lAke~~i~vi~lsQln 365 (448)
T PRK05748 339 EVSEISRSLK------------ALAKELKVPVIALSQLS 365 (448)
T ss_pred HHHHHHHHHH------------HHHHHhCCeEEEecccC
Confidence 3444444332 12233566777777654
No 420
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.59 E-value=0.49 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=16.7
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~ 169 (560)
-.|++||.|+|||..+...+-
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 359999999999998655443
No 421
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.44 E-value=0.87 Score=51.22 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.8
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 008602 150 VVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i 168 (560)
++++||||+|||..+-..+
T Consensus 599 ~lf~Gp~GvGKT~lA~~La 617 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALA 617 (852)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999865443
No 422
>CHL00176 ftsH cell division protein; Validated
Probab=91.39 E-value=1.6 Score=47.21 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.4
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
+.+|+.||+|+|||+.+-..
T Consensus 217 ~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56999999999999875433
No 423
>PF12846 AAA_10: AAA-like domain
Probab=91.37 E-value=0.26 Score=48.10 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=31.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~ 205 (560)
.+++|+|+||+|||......+...+ ..|..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~----------------~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLI----------------RRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH----------------HcCCCEEEEcCCchHHH
Confidence 5789999999999988775555555 45677888877755544
No 424
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.37 E-value=0.36 Score=47.82 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=28.4
Q ss_pred ChHHHHHHHhhhhc----C---CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 133 PTEVQSAAIPSILK----N---HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~----~---~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
.+|||...+..+.+ + +-.|+.||.|.||+..+...+-..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 45777777776653 3 457899999999999876655443
No 425
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.35 E-value=0.68 Score=43.07 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
...++|.||-|+|||.. +.-+...+
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 36789999999999986 44444433
No 426
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.31 E-value=0.47 Score=47.93 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=18.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..++|+||+|+|||.+. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999874 4444443
No 427
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.31 E-value=0.61 Score=46.56 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..++++||||||||+.. ..++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 457899999999999873 4555545
No 428
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.27 E-value=0.22 Score=47.47 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=30.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 199 (560)
.|.-++|+|++|+|||..++..+...+ ..|..+++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a----------------~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA----------------SRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH----------------hCCCcEEEEEe
Confidence 356789999999999999998888766 33556788773
No 429
>PHA00729 NTP-binding motif containing protein
Probab=91.25 E-value=1.4 Score=40.53 Aligned_cols=20 Identities=40% Similarity=0.308 Sum_probs=16.4
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
+++|.|++|+|||..+...+
T Consensus 19 nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999998754443
No 430
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.11 E-value=1.7 Score=42.92 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=20.0
Q ss_pred CCc-EEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHD-VVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~-~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
... .|+.||.|+|||.++...+-...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 345 99999999999998766655444
No 431
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.02 E-value=2.1 Score=42.55 Aligned_cols=48 Identities=29% Similarity=0.314 Sum_probs=31.6
Q ss_pred HHHHHhCCCCCChHHHHHHHhhhhc-CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 122 LERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 122 ~~~l~~~~~~~~~~~Q~~ai~~i~~-~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..+...|+ .++.+...+..+.. +.+++++|+||+|||.. +..++..+
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i 202 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV 202 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC
Confidence 334455565 34566666665444 67999999999999975 34444444
No 432
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.93 E-value=1.3 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=18.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..|++||.|+|||..+...+-.
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999987666544
No 433
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.93 E-value=1.4 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=18.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+..|++||.|+|||..+...+-..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 457999999999999866655443
No 434
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=90.85 E-value=9.3 Score=37.71 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=41.4
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCCceee-----ccCCCCHHHHHHHHHHhhcCCceEEEEec
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAE-----LHGDLGKLARSTTLKKFKNGEVRVLVTNE 471 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~-----lhg~~~~~~r~~v~~~F~~g~~~iLvaT~ 471 (560)
.+.+++.|| .+..-+.+...|++.|+.+.. =|-..+..+-+......+... .||+|.
T Consensus 226 ~~~~v~a~s-GIg~P~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 226 KGKPVLAFS-GIGNPERFFDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred cCCeeEEEE-EcCChHHHHHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 355666555 578888888999998876552 277888888888887766544 788884
No 435
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.74 E-value=1.1 Score=48.22 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=17.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+-.|++||.|+|||..+...+-.
T Consensus 40 hayLf~Gp~G~GKtt~A~~lAk~ 62 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCARIFAKT 62 (614)
T ss_pred eeEEEECCCCCCHHHHHHHHHHH
Confidence 34799999999999965554433
No 436
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.71 E-value=0.14 Score=45.57 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=25.5
Q ss_pred CCcEEEeCchHHHHHHHcCC---ccCCCeeEEEEechhhhhc
Q 008602 243 KPAIVVGTPGRIAEISAAGK---LHTHGCRFLVLDEIDELLS 281 (560)
Q Consensus 243 ~~~IlI~Tp~~l~~~l~~~~---~~~~~l~llIiDE~h~l~~ 281 (560)
..||+|+++..|.+-..... +.++ -.+|||||||.+.+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHH
Confidence 46799999999977432222 2233 37999999999655
No 437
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.69 E-value=0.5 Score=50.53 Aligned_cols=44 Identities=30% Similarity=0.436 Sum_probs=30.7
Q ss_pred HHhCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 125 LEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+...|| .+.|.+.+..+... .-++++||||||||+. +..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 455666 46677777665553 4578999999999987 35555555
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.53 E-value=0.45 Score=46.68 Aligned_cols=28 Identities=32% Similarity=0.530 Sum_probs=20.8
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..+..++++|+||||||+. +..++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTl-l~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF-LKSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH-HHHHHccC
Confidence 44578999999999999986 34444443
No 439
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.44 E-value=3.9 Score=36.12 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=18.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~ 169 (560)
+.++|.|++|||||..+...+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4589999999999998766653
No 440
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.43 E-value=1.9 Score=43.06 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=18.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
-.|++||.|+|||..+...+-..
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHH
Confidence 58999999999998866555443
No 441
>PRK05595 replicative DNA helicase; Provisional
Probab=90.38 E-value=1.5 Score=45.47 Aligned_cols=54 Identities=15% Similarity=-0.004 Sum_probs=34.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
..|.-++|.|.||.|||..++..+..... ..|..|+++..- .-..|+..++-..
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~---------------~~g~~vl~fSlE-ms~~~l~~R~~a~ 252 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAAL---------------REGKSVAIFSLE-MSKEQLAYKLLCS 252 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHH---------------HcCCcEEEEecC-CCHHHHHHHHHHH
Confidence 33566788999999999987777654321 234557777553 3455666665444
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.35 E-value=0.38 Score=50.53 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=45.5
Q ss_pred HHHhhhhc-----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 139 AAIPSILK-----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 139 ~ai~~i~~-----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
..++.++. |.-++|.||+|+|||+..+..+...+ ..|.++++++ .-+-..|+.++...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~----------------~~ge~~~y~s-~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC----------------ANKERAILFA-YEESRAQLLRNAYS 312 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH----------------HCCCeEEEEE-eeCCHHHHHHHHHH
Confidence 35555554 46799999999999999999988877 4466788877 55777888888765
Q ss_pred H
Q 008602 214 L 214 (560)
Q Consensus 214 ~ 214 (560)
+
T Consensus 313 l 313 (484)
T TIGR02655 313 W 313 (484)
T ss_pred c
Confidence 4
No 443
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=6.5 Score=36.71 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=31.9
Q ss_pred cccCCcccCCCCHHHHHHHHhC---CCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHH
Q 008602 107 FAANSFLELGLPPLLLERLERE---GFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~ 165 (560)
.|...|.+.+=..+-++.+... +...|-. .+.. |-.-+.+++.||+|+|||+++-
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~per----fv~lgidppkgvllygppgtgktl~ar 229 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPER----FVNLGIDPPKGVLLYGPPGTGKTLCAR 229 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHH----HhhcCCCCCCceEEeCCCCCchhHHHH
Confidence 3456677776665555444432 2222211 1111 2223789999999999999853
No 444
>PRK13695 putative NTPase; Provisional
Probab=90.25 E-value=2.7 Score=37.27 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=16.4
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
+.++++|+.|+|||+.....
T Consensus 1 ~~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46889999999999976543
No 445
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.23 E-value=1.7 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+-.|++||.|+|||.++...+-.
T Consensus 39 hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 34799999999999986655433
No 446
>PRK09165 replicative DNA helicase; Provisional
Probab=90.22 E-value=5.5 Score=41.95 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=61.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEE
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~ 226 (560)
|.-++|.|.+|.|||..++..+............ ..+......|..|+|++. -.-..|+..++.......+.. .+
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~-~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~---~i 291 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQ-PDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSS---KI 291 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhccccc-ccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHH---HH
Confidence 4568999999999999877766655421110000 000000123556777754 344567776665543322221 12
Q ss_pred ecCCChhHHHHHHHc-----CCCcEEEe-----CchHHHHHHHcCCccCCCeeEEEEechhhhh
Q 008602 227 VGGANRSRQEEALRK-----NKPAIVVG-----TPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 227 ~~~~~~~~~~~~l~~-----~~~~IlI~-----Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~ 280 (560)
..+.-....+..+.. ....+.|- |.+.+......... -..+++||||=.|.|.
T Consensus 292 ~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 292 RRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 222222222222211 11125543 33344332221111 1347899999999764
No 447
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.21 E-value=5.7 Score=36.05 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=33.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEc---cCHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA---PSRELGMQI 207 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~---Pt~~La~Q~ 207 (560)
.=++|.|+.|+|||.-.++.++-.+ ..|.++.+++ |+++...|+
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L----------------~~g~~v~yvsTe~T~refi~qm 75 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFL----------------MNGYRVTYVSTELTVREFIKQM 75 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHH----------------hCCceEEEEEechhHHHHHHHH
Confidence 4589999999999999999988887 5566677776 455555543
No 448
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.19 E-value=0.17 Score=47.47 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=12.9
Q ss_pred EEEEcCCCchHHHHH
Q 008602 150 VVIQSYTGSGKTLAY 164 (560)
Q Consensus 150 ~li~~~TGsGKT~~~ 164 (560)
++|.|+.|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999863
No 449
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.15 E-value=1 Score=42.21 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=64.7
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCC----ceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcccc-CCCCcc
Q 008602 437 GMKAAELHGDLGKLARSTTLKKFKNGE----VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG-RLGRRG 511 (560)
Q Consensus 437 ~~~~~~lhg~~~~~~r~~v~~~F~~g~----~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~g-R~g~~g 511 (560)
++.+..++++.+... -+|.++. ..|+|+-+.++||+.+++..+....-.+...+++.||.=.-| |.|=.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 577788887655433 3444443 889999999999999999999999989998899999875555 565566
Q ss_pred eEEEEecCccHHHHHHH
Q 008602 512 TVVSICEEPEVFVVKKM 528 (560)
Q Consensus 512 ~~~~l~~~~e~~~~~~l 528 (560)
.|-++.+++-...+..+
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 78888876644444433
No 450
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.11 E-value=3.4 Score=46.05 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+.+++.||+|+|||+.+-..
T Consensus 487 ~~giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 356899999999999875443
No 451
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.10 E-value=0.51 Score=45.09 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=39.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
.|..++|.|++|+|||+-++..+...+ ..|-.+++++- .+...++.+.+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~----------------~~ge~vlyvs~-~e~~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA----------------REGEPVLYVST-EESPEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH----------------hcCCcEEEEEe-cCCHHHHHHHHHH
Confidence 357899999999999999999998887 33555776654 4666777777765
No 452
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.04 E-value=0.37 Score=44.29 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccC
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPS 200 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt 200 (560)
|.-+.|+|++|+|||..++..+.... ..+..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~----------------~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA----------------RQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH----------------hCCCeEEEEECC
Confidence 46789999999999999888887765 234567777664
No 453
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.98 E-value=3.3 Score=39.63 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+++++.|++|+|||+. +..+...+
T Consensus 112 ~~~~i~g~~g~GKttl-~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL-LRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHH-HHHHhCcc
Confidence 5789999999999975 44444433
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.98 E-value=0.41 Score=43.57 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=16.9
Q ss_pred EEEEcCCCchHHHHHHHHHHhhh
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
++++||||||||+.. ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 689999999999874 4455544
No 455
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.97 E-value=1.2 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=18.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..|+.||.|+|||..+...+-.
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999987665544
No 456
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=2.1 Score=42.74 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHhhhhc-----CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 140 AIPSILK-----NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 140 ai~~i~~-----~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
-++.++. |.-+||-|++|.|||+..+..+.... ..+ ++||++-- |...|+.-+..++
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA----------------~~~-~vLYVsGE-ES~~QiklRA~RL 142 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA----------------KRG-KVLYVSGE-ESLQQIKLRADRL 142 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH----------------hcC-cEEEEeCC-cCHHHHHHHHHHh
Confidence 4455554 46789999999999998777776655 233 68988765 6678998888765
No 457
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=89.89 E-value=0.95 Score=44.85 Aligned_cols=43 Identities=12% Similarity=-0.108 Sum_probs=28.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccC
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPS 200 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt 200 (560)
.-+.|+|+.|+|||...+..++....+. .....+.+++++...
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~----------~~gg~~~~vvyIdTE 169 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPT----------EMGGGNGKVAYIDTE 169 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcch----------hhCCCCceEEEEEcC
Confidence 5578999999999998887776554210 001223578888763
No 458
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=89.86 E-value=0.8 Score=43.53 Aligned_cols=52 Identities=19% Similarity=0.106 Sum_probs=34.3
Q ss_pred HHhhhhcC-----CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCH
Q 008602 140 AIPSILKN-----HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSR 201 (560)
Q Consensus 140 ai~~i~~~-----~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~ 201 (560)
.++.++.| .-+=|+|+.|+|||-..+..++....+. ...+.+.+|+++.-.-
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~----------~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPE----------EIGGLGGKVVYIDTEG 82 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGG----------CTTSSSSEEEEEESSS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhccc----------ccccCCCceEEEeCCC
Confidence 66666664 4455999999999998887776654321 1123456788887544
No 459
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.82 E-value=0.58 Score=43.71 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.|..+++.|++|+|||..+...+...+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 357899999999999998777766655
No 460
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.80 E-value=0.61 Score=43.41 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
+.-+++.|++|+|||..++..+...+ ..|..++++... +-..++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~----------------~~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGL----------------KNGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH----------------hCCCeEEEEECC-CCHHHHHHHHHHc
Confidence 56789999999999998888887766 335567777654 4567777777553
No 461
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.79 E-value=3.1 Score=47.09 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~ 169 (560)
.+.++.||+|+|||..+-..+.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999988654443
No 462
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.79 E-value=0.91 Score=44.51 Aligned_cols=41 Identities=12% Similarity=-0.073 Sum_probs=29.0
Q ss_pred CChHHHHHHHhhhhc----C---CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 132 VPTEVQSAAIPSILK----N---HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~----~---~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..+|||...+..+.+ + +-.+++||.|.||+..+...+-..+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 346777777766553 3 4689999999999987666554433
No 463
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.68 E-value=1.3 Score=46.54 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~ 170 (560)
-.|++||.|+|||.++...+-.
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4589999999999886655544
No 464
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.67 E-value=1.2 Score=44.69 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=19.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+-.|+.||.|+||+..+...+-..+
T Consensus 42 HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 3589999999999998766665544
No 465
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.45 E-value=0.4 Score=45.87 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=23.2
Q ss_pred HHHhhhhcCCcEEEEcCCCchHHHHHHHHH
Q 008602 139 AAIPSILKNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 139 ~ai~~i~~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.++..+..+..+++.|++|+|||..+...+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 344556668999999999999999865443
No 466
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=89.42 E-value=0.95 Score=42.42 Aligned_cols=26 Identities=23% Similarity=0.037 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
|.-+.++|++|+|||..++..+....
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~ 44 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQ 44 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHee
Confidence 56789999999999999887776644
No 467
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.16 E-value=2.2 Score=48.12 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=19.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
.+.++.||+|+|||.++-..+...
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999875555443
No 468
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.15 E-value=0.33 Score=34.47 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~ 164 (560)
+...+|.|++|+|||...
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446999999999999863
No 469
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.13 E-value=2.4 Score=47.79 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=22.5
Q ss_pred HHHHHhhhhc------CCcEEEEcCCCchHHHHHHHHH
Q 008602 137 QSAAIPSILK------NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 137 Q~~ai~~i~~------~~~~li~~~TGsGKT~~~~~~i 168 (560)
|..-+..+.. ..+.++.||.|+|||..+-..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La 229 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLA 229 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHH
Confidence 5555555442 2589999999999998864444
No 470
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.11 E-value=36 Score=36.62 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=13.4
Q ss_pred eEEEEEeeCChHHHHHHHHcC
Q 008602 317 QTIMVSATVPFSVIRAARSWG 337 (560)
Q Consensus 317 ~~l~~SAT~~~~~~~~~~~~~ 337 (560)
-+++..+|+.|-..-....+.
T Consensus 547 avvLAGGTMeP~~e~~e~L~~ 567 (821)
T KOG1133|consen 547 AVVLAGGTMEPVDELREQLFP 567 (821)
T ss_pred eeeecCCccccHHHHHHHhcc
Confidence 578888998765544444443
No 471
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.04 E-value=0.67 Score=45.34 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=32.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~ 205 (560)
.|.-++|+||+|+|||..++..+.... ..|..++++...-.+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~----------------~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ----------------KAGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----------------HcCCcEEEEcccchhHH
Confidence 346788999999999999888887766 33566888766544433
No 472
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.01 E-value=3.2 Score=41.78 Aligned_cols=28 Identities=29% Similarity=0.282 Sum_probs=21.1
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+-.|+.++|+||+|+|||.. +..+...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL-~~~i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL-LQKIAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHH-HHHHHHhh
Confidence 33578999999999999986 34455554
No 473
>PRK05636 replicative DNA helicase; Provisional
Probab=88.93 E-value=2.9 Score=43.95 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
|.-++|.|.+|.|||..++..+...
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~ 289 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSA 289 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567889999999998777665543
No 474
>PRK09087 hypothetical protein; Validated
Probab=88.87 E-value=1.4 Score=40.99 Aligned_cols=19 Identities=37% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~ 165 (560)
+..++++|++|+|||.-..
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3458999999999998644
No 475
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.79 E-value=3 Score=47.08 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC-------CCeeEEEEccCHHHHH---
Q 008602 138 SAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK-------TDIEAVIVAPSRELGM--- 205 (560)
Q Consensus 138 ~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~vlil~Pt~~La~--- 205 (560)
.+.+..+... .+.++.||+|+|||..+-..+.... . .+.+++.+.....++.
T Consensus 188 ~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~----------------~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 188 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII----------------NGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred HHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh----------------cCCCchhhCCCEEEEEehhhhhhccch
Q ss_pred ------HHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhh
Q 008602 206 ------QIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDEL 279 (560)
Q Consensus 206 ------Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l 279 (560)
.+...+.......... +|+|||+|.+
T Consensus 252 ~g~~e~~lk~~~~~~~~~~~~~------------------------------------------------ILfIDEih~l 283 (857)
T PRK10865 252 RGEFEERLKGVLNDLAKQEGNV------------------------------------------------ILFIDELHTM 283 (857)
T ss_pred hhhhHHHHHHHHHHHHHcCCCe------------------------------------------------EEEEecHHHh
Q ss_pred hccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHH
Q 008602 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAAR 334 (560)
Q Consensus 280 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~ 334 (560)
.+.+-...-...-+.+.... ..-.+.+..||-.++...+..
T Consensus 284 ~~~~~~~~~~d~~~~lkp~l--------------~~g~l~~IgaTt~~e~r~~~~ 324 (857)
T PRK10865 284 VGAGKADGAMDAGNMLKPAL--------------ARGELHCVGATTLDEYRQYIE 324 (857)
T ss_pred ccCCCCccchhHHHHhcchh--------------hcCCCeEEEcCCCHHHHHHhh
No 476
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.76 E-value=2.3 Score=42.19 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=17.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
-.|++||.|+|||..+...+-..
T Consensus 30 a~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 30 AYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46999999999998866554443
No 477
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.60 E-value=4.3 Score=34.36 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=20.4
Q ss_pred CCChhHHHHHHHcCCCcEEEeCchHHHHHHH
Q 008602 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISA 259 (560)
Q Consensus 229 ~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~ 259 (560)
|.........+..+..-|+.++++.+..+..
T Consensus 77 g~~~~~i~~~~~~g~~~il~~~~~~~~~l~~ 107 (137)
T cd00071 77 GTSKAAVEEALAEGKIVILEIDVQGARQVKK 107 (137)
T ss_pred cCcHHHHHHHHhCCCeEEEEecHHHHHHHHH
Confidence 4445555666777776677778877766554
No 478
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.56 E-value=0.55 Score=43.49 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=25.9
Q ss_pred HHhhhhc-----CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 140 AIPSILK-----NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 140 ai~~i~~-----~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++.++. |.-++|.|++|+|||..++..+....
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555554 45688999999999999888887765
No 479
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.52 E-value=3.3 Score=46.17 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++.++++||+|+|||..+ ..+...+
T Consensus 211 ~~~giLL~GppGtGKT~la-raia~~~ 236 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA-KAVANEA 236 (733)
T ss_pred CCceEEEECCCCCChHHHH-HHHHHHh
Confidence 3578999999999999763 3444433
No 480
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.47 E-value=2.3 Score=48.82 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=21.2
Q ss_pred HhhhhcCCcEEEEcCCCchHHHHHHHHH
Q 008602 141 IPSILKNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 141 i~~i~~~~~~li~~~TGsGKT~~~~~~i 168 (560)
+......+-++|+||.|+|||.....++
T Consensus 26 l~~~~~~~~~~v~apaG~GKTtl~~~~~ 53 (903)
T PRK04841 26 LSGANNYRLVLVTSPAGYGKTTLISQWA 53 (903)
T ss_pred HhcccCCCeEEEECCCCCCHHHHHHHHH
Confidence 3344445679999999999999866655
No 481
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.46 E-value=5.8 Score=40.93 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=33.4
Q ss_pred cCCCCHHHHHHHHhCCCCCChHHHHHHHh-------hhhc-----CCcEEEEcCCCchHHHHHHHHHH
Q 008602 114 ELGLPPLLLERLEREGFNVPTEVQSAAIP-------SILK-----NHDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 114 ~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~-------~i~~-----~~~~li~~~TGsGKT~~~~~~i~ 169 (560)
.||.+++-++.+...|.-.-.|.=...+. .+.. -..+|+.||.|||||.-+...+.
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~ 560 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL 560 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh
Confidence 46788887777777665332222222221 1111 14689999999999976555443
No 482
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=88.40 E-value=0.75 Score=45.06 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=33.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
|+-+.|.||+|+|||..++..+.... ..|..++++.+.-.+-.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~----------------~~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ----------------KLGGTVAFIDAEHALDPV 98 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH----------------HcCCCEEEECccccHHHH
Confidence 46788999999999999888887765 345668888876555443
No 483
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=88.34 E-value=1.8 Score=38.87 Aligned_cols=31 Identities=10% Similarity=0.262 Sum_probs=20.3
Q ss_pred CCChhHHHHHHHcCCCcEEEeCchHHHHHHH
Q 008602 229 GANRSRQEEALRKNKPAIVVGTPGRIAEISA 259 (560)
Q Consensus 229 ~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~ 259 (560)
|.........+..+...|+.++|..+..+..
T Consensus 80 Gt~~~~i~~~~~~~~~~ild~~~~~~~~l~~ 110 (184)
T smart00072 80 GTSKETIRQVAEQGKHCLLDIDPQGVKQLRK 110 (184)
T ss_pred ccCHHHHHHHHHcCCeEEEEECHHHHHHHHH
Confidence 4555555666666776677788877766443
No 484
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.34 E-value=0.44 Score=44.25 Aligned_cols=15 Identities=47% Similarity=0.558 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHH
Q 008602 149 DVVIQSYTGSGKTLA 163 (560)
Q Consensus 149 ~~li~~~TGsGKT~~ 163 (560)
-++++|+|||||+..
T Consensus 129 LviiVGaTGSGKSTt 143 (375)
T COG5008 129 LVIIVGATGSGKSTT 143 (375)
T ss_pred eEEEECCCCCCchhh
Confidence 478999999999987
No 485
>PRK14701 reverse gyrase; Provisional
Probab=88.15 E-value=1.7 Score=52.09 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=53.9
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~ 472 (560)
.+.+++|.+|++.-+.++...|+.. ++.+..+||+++..++..+++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4668999999999999998888763 467788999999999999999999999999999974
No 486
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.14 E-value=1.2 Score=40.18 Aligned_cols=70 Identities=20% Similarity=0.137 Sum_probs=40.9
Q ss_pred HHhhhh-cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhC
Q 008602 140 AIPSIL-KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216 (560)
Q Consensus 140 ai~~i~-~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 216 (560)
.++-++ .|.-+++.|++|+|||...+..+...+.....-. .....+.+|+++..--. ..++.+++.....
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g------~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLG------ELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCC------cccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 333343 5677999999999999998877777662111000 00123566888776544 5678888877654
No 487
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.13 E-value=1.2 Score=50.19 Aligned_cols=36 Identities=22% Similarity=0.096 Sum_probs=24.9
Q ss_pred HHHHHHHhhhhcC---------------CcEEEEcCCCchHHHHHHHHHHh
Q 008602 135 EVQSAAIPSILKN---------------HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 135 ~~Q~~ai~~i~~~---------------~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
..|..|+..+... ..++++||||+|||..+-..+-.
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 3577777765431 13689999999999886555433
No 488
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=2.2 Score=43.84 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~ 164 (560)
+.+|++||+|+|||+-+
T Consensus 338 KGVLLvGPPGTGKTlLA 354 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLA 354 (752)
T ss_pred CceEEeCCCCCchhHHH
Confidence 68999999999999863
No 489
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.06 E-value=0.61 Score=49.81 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred ChHHHHHHHhhhhcC----------CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 133 PTEVQSAAIPSILKN----------HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~----------~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
+...|.+|+-...+. -..||-...|.||--...-.|++.. -+..+++|.+.-+..
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNy---------------LkGRKrAlW~SVSsD 329 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENY---------------LKGRKRALWFSVSSD 329 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhh---------------hcccceeEEEEeccc
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCc---------------hHHHHHHHcCCccCCC
Q 008602 203 LGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP---------------GRIAEISAAGKLHTHG 267 (560)
Q Consensus 203 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp---------------~~l~~~l~~~~~~~~~ 267 (560)
|-..-.+.++.. +...+.|+.+..-+-..-..+.-.+-+-.|+++|+ .+|..+++.-.-+|.
T Consensus 330 LKfDAERDL~Di--gA~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe- 406 (1300)
T KOG1513|consen 330 LKFDAERDLRDI--GATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE- 406 (1300)
T ss_pred cccchhhchhhc--CCCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc-
Q ss_pred eeEEEEechhhhhc---------cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEee
Q 008602 268 CRFLVLDEIDELLS---------FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT 324 (560)
Q Consensus 268 l~llIiDE~h~l~~---------~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT 324 (560)
++||+||||+--. ..-+..+-.+-+.+ ++.+++.-|||
T Consensus 407 -GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L------------------P~ARVVYASAT 453 (1300)
T KOG1513|consen 407 -GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL------------------PNARVVYASAT 453 (1300)
T ss_pred -eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhC------------------CCceEEEeecc
No 490
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=88.05 E-value=0.5 Score=39.02 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=25.3
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
+..+.-+++.|+.|+|||.- ...++..++ ..--|.+||=.|+
T Consensus 12 l~~g~vi~L~GdLGaGKTtf-~r~l~~~lg------------------~~~~V~SPTF~l~ 53 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTF-VRGLARALG------------------IDEEVTSPTFSLV 53 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHH-HHHHHHHTT--------------------S----TTTTSE
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHHHHcC------------------CCCCcCCCCeEEE
Confidence 34456678999999999964 666666662 1236778887664
No 491
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.05 E-value=0.64 Score=48.81 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
|..++|+|++|+|||+.++..+++.+. ..|..+++++- -+-..++.+.+..+
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~g~~---------------~~ge~~lyvs~-eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYNGII---------------HFDEPGVFVTF-EESPQDIIKNARSF 72 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH---------------hCCCCEEEEEE-ecCHHHHHHHHHHc
Confidence 578999999999999999999887651 22455777774 35566666666554
No 492
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.89 E-value=1 Score=50.73 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=75.2
Q ss_pred cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEE-EEecCcccCCCCCCCCEEEEcc
Q 008602 411 LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL-VTNELSARGLDVAECDLVVNLD 489 (560)
Q Consensus 411 ~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iL-vaT~~~~~Gidip~v~~VI~~~ 489 (560)
....++|+|+......+.+...+..+++....--+ .++-...+..|++ +++| +-+...+.|+++-.+.+|+..+
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheec
Confidence 34578999999888888888887776665433222 3345566677766 5544 6688899999999999999999
Q ss_pred CCCChhhhHhhhccccCCCCcc
Q 008602 490 LPTDSIHYAHRAGRTGRLGRRG 511 (560)
Q Consensus 490 ~p~s~~~y~Qr~GR~gR~g~~g 511 (560)
+-.++..-.|.+||+.|.|++-
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cccCchHHHhhhhhhhhccccc
Confidence 9999999999999999999754
No 493
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.70 E-value=3 Score=39.34 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=21.1
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+-.|+.++|.|+.|+|||.. +..++..+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l 40 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL-LQSIANAI 40 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 44688999999999999975 34455544
No 494
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=87.60 E-value=0.92 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~ 169 (560)
+-.+.+||-|+|||.++-+.+-
T Consensus 39 hAYlfsG~RGvGKTt~Ari~Ak 60 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAK 60 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHH
Confidence 4578999999999998655553
No 495
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=87.58 E-value=0.46 Score=39.13 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 008602 150 VVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i 168 (560)
++|+|++|||||+.+-..+
T Consensus 2 I~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999865544
No 496
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=87.27 E-value=0.72 Score=42.94 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=25.8
Q ss_pred HHhhhhc-----CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 140 AIPSILK-----NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 140 ai~~i~~-----~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++.++. |.-+++.|++|+|||..++..+...+
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~ 48 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA 48 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455554 46789999999999999888887765
No 497
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=87.26 E-value=2 Score=42.21 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=24.8
Q ss_pred HHhhhhcC-----CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 140 AIPSILKN-----HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 140 ai~~i~~~-----~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++.++.| .-+.|+|+.|+|||...+..++...
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~ 121 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQ 121 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHh
Confidence 45555553 5678999999999999887776543
No 498
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=87.24 E-value=1.4 Score=48.37 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=56.2
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.+++.|.+|+... ...++|.|..|||||.+...-+...+... .-...++++++=|+-.|.++.+++
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~------------~v~p~~Il~vTFTnkAA~em~~Rl 67 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAG------------GVDPEQILAITFTNKAAAEMRERL 67 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcC------------CcChHHeeeeechHHHHHHHHHHH
Confidence 4689999999877 55789999999999999777777766221 122345999999999999999999
Q ss_pred HHHhC
Q 008602 212 KKLLG 216 (560)
Q Consensus 212 ~~~~~ 216 (560)
.+.++
T Consensus 68 ~~~~~ 72 (655)
T COG0210 68 LKLLG 72 (655)
T ss_pred HHHhC
Confidence 98876
No 499
>PRK09354 recA recombinase A; Provisional
Probab=87.23 E-value=0.97 Score=44.71 Aligned_cols=43 Identities=26% Similarity=0.159 Sum_probs=33.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~ 205 (560)
|+-+.|.||+|+|||..++..+.... ..|..++++..--.+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~----------------~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ----------------KAGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH----------------HcCCcEEEECCccchHH
Confidence 46788999999999999998888776 34666888887655544
No 500
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.17 E-value=2.3 Score=47.09 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.9
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
.++++||||+|||..+-..
T Consensus 490 ~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4799999999999986543
Done!