Query 008602
Match_columns 560
No_of_seqs 374 out of 2487
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 07:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.1E-59 3.9E-64 485.2 44.8 381 98-537 44-425 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.8E-56 6.2E-61 460.0 42.9 373 107-544 34-407 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 5.8E-56 2E-60 457.4 39.1 386 101-534 6-397 (417)
4 3eiq_A Eukaryotic initiation f 100.0 4.3E-56 1.5E-60 458.0 37.6 375 107-545 37-412 (414)
5 1xti_A Probable ATP-dependent 100.0 4E-55 1.4E-59 447.2 44.4 371 110-542 8-380 (391)
6 1s2m_A Putative ATP-dependent 100.0 4.7E-55 1.6E-59 448.1 44.3 372 108-545 19-390 (400)
7 3fht_A ATP-dependent RNA helic 100.0 2.2E-54 7.6E-59 444.9 41.6 375 106-547 21-407 (412)
8 1hv8_A Putative ATP-dependent 100.0 2.1E-53 7E-58 430.7 43.4 360 110-541 6-366 (367)
9 3i5x_A ATP-dependent RNA helic 100.0 3.2E-54 1.1E-58 461.1 38.2 377 117-541 79-470 (563)
10 3sqw_A ATP-dependent RNA helic 100.0 2.6E-54 8.8E-59 461.9 37.0 378 117-542 28-420 (579)
11 3pey_A ATP-dependent RNA helic 100.0 3.9E-53 1.3E-57 433.0 39.9 364 109-541 4-379 (395)
12 3fmp_B ATP-dependent RNA helic 100.0 2.9E-55 1E-59 459.6 22.5 375 107-548 89-475 (479)
13 1fuu_A Yeast initiation factor 100.0 1E-54 3.6E-59 444.6 24.7 372 107-544 18-390 (394)
14 2z0m_A 337AA long hypothetical 100.0 3.4E-50 1.2E-54 402.1 36.2 336 117-534 1-336 (337)
15 3fho_A ATP-dependent RNA helic 100.0 3.3E-51 1.1E-55 430.0 22.2 372 107-547 116-498 (508)
16 1oyw_A RECQ helicase, ATP-depe 100.0 3.3E-49 1.1E-53 414.5 35.4 344 110-530 2-353 (523)
17 2v1x_A ATP-dependent DNA helic 100.0 6.7E-49 2.3E-53 416.0 35.9 340 112-528 23-382 (591)
18 2eyq_A TRCF, transcription-rep 100.0 6.7E-49 2.3E-53 444.0 28.5 387 17-521 524-923 (1151)
19 3oiy_A Reverse gyrase helicase 100.0 1.4E-48 4.8E-53 401.4 27.5 350 121-546 10-391 (414)
20 3l9o_A ATP-dependent RNA helic 100.0 2E-47 6.7E-52 429.3 29.5 375 110-530 162-608 (1108)
21 2va8_A SSO2462, SKI2-type heli 100.0 1.9E-45 6.5E-50 403.2 35.7 353 110-522 8-410 (715)
22 2zj8_A DNA helicase, putative 100.0 2.5E-45 8.4E-50 402.1 31.1 343 111-521 2-388 (720)
23 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-45 3.8E-50 403.7 27.2 341 111-521 2-389 (702)
24 1gm5_A RECG; helicase, replica 100.0 1.7E-45 5.8E-50 397.6 22.2 321 119-522 356-699 (780)
25 4ddu_A Reverse gyrase; topoiso 100.0 1.3E-44 4.5E-49 406.3 28.8 338 127-542 74-514 (1104)
26 2ykg_A Probable ATP-dependent 100.0 1.1E-44 3.9E-49 397.1 27.4 379 123-528 4-524 (696)
27 2xgj_A ATP-dependent RNA helic 100.0 9.8E-44 3.4E-48 396.0 33.9 357 125-529 80-509 (1010)
28 3tbk_A RIG-I helicase domain; 100.0 4.1E-44 1.4E-48 382.9 28.2 369 132-528 4-515 (555)
29 4a2p_A RIG-I, retinoic acid in 100.0 8.5E-44 2.9E-48 380.5 30.2 363 132-522 7-510 (556)
30 1tf5_A Preprotein translocase 100.0 3.3E-43 1.1E-47 371.8 27.8 328 127-522 79-547 (844)
31 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-42 4.2E-47 384.3 31.8 368 127-522 243-751 (797)
32 1wp9_A ATP-dependent RNA helic 100.0 1.3E-41 4.3E-46 357.6 36.0 353 132-521 9-476 (494)
33 4a4z_A Antiviral helicase SKI2 100.0 3.5E-42 1.2E-46 383.7 29.2 357 127-530 35-504 (997)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 3.7E-43 1.3E-47 395.1 20.1 333 126-534 52-468 (1054)
35 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-41 4.7E-46 379.5 31.7 367 126-522 242-751 (936)
36 4gl2_A Interferon-induced heli 100.0 1.4E-42 4.7E-47 380.8 18.4 369 132-520 7-519 (699)
37 2fsf_A Preprotein translocase 100.0 2.4E-41 8.2E-46 356.4 26.3 399 128-551 71-614 (853)
38 2oca_A DAR protein, ATP-depend 100.0 7.1E-43 2.4E-47 368.7 11.2 335 132-518 113-453 (510)
39 1nkt_A Preprotein translocase 100.0 1.1E-39 3.6E-44 344.1 31.1 330 127-524 107-621 (922)
40 2xau_A PRE-mRNA-splicing facto 100.0 2.7E-40 9.3E-45 359.7 25.4 337 106-522 68-445 (773)
41 4f92_B U5 small nuclear ribonu 100.0 6.8E-40 2.3E-44 380.5 29.4 348 117-529 911-1317(1724)
42 2whx_A Serine protease/ntpase/ 100.0 8.5E-42 2.9E-46 362.6 10.1 315 115-532 155-493 (618)
43 2jlq_A Serine protease subunit 100.0 9.5E-41 3.2E-45 344.7 15.9 289 129-520 1-311 (451)
44 4f92_B U5 small nuclear ribonu 100.0 1E-39 3.5E-44 379.0 25.8 345 129-530 76-483 (1724)
45 2fwr_A DNA repair protein RAD2 100.0 7.4E-40 2.5E-44 342.2 18.2 321 132-520 93-454 (472)
46 1yks_A Genome polyprotein [con 100.0 3.2E-41 1.1E-45 346.6 3.5 280 143-532 4-314 (440)
47 3o8b_A HCV NS3 protease/helica 100.0 1.2E-39 4.1E-44 342.3 15.1 298 132-541 217-539 (666)
48 2wv9_A Flavivirin protease NS2 100.0 1.9E-40 6.6E-45 354.2 8.5 299 132-532 215-548 (673)
49 2z83_A Helicase/nucleoside tri 100.0 4.8E-39 1.6E-43 332.5 9.1 280 139-520 13-313 (459)
50 2v6i_A RNA helicase; membrane, 100.0 6.2E-37 2.1E-41 314.1 19.6 270 146-517 1-288 (431)
51 3h1t_A Type I site-specific re 100.0 6.9E-36 2.4E-40 320.4 21.5 336 132-509 178-545 (590)
52 3dmq_A RNA polymerase-associat 100.0 3.4E-36 1.2E-40 336.4 19.4 349 132-518 153-611 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 5.6E-35 1.9E-39 311.0 24.8 293 144-539 152-463 (677)
54 3fe2_A Probable ATP-dependent 100.0 1.3E-34 4.3E-39 274.5 24.1 219 101-346 20-238 (242)
55 3bor_A Human initiation factor 100.0 3.8E-34 1.3E-38 270.1 23.8 211 104-345 24-234 (237)
56 3iuy_A Probable ATP-dependent 100.0 8.7E-34 3E-38 266.4 23.4 216 102-344 11-227 (228)
57 3fmo_B ATP-dependent RNA helic 100.0 8E-34 2.7E-38 276.5 23.8 205 107-345 89-297 (300)
58 1t6n_A Probable ATP-dependent 100.0 2.4E-33 8.1E-38 261.9 25.2 209 106-344 10-219 (220)
59 2oxc_A Probable ATP-dependent 100.0 2E-33 7E-38 264.0 24.8 211 102-344 16-227 (230)
60 1vec_A ATP-dependent RNA helic 100.0 4.2E-33 1.4E-37 257.5 26.2 203 110-343 3-205 (206)
61 1z63_A Helicase of the SNF2/RA 100.0 7E-33 2.4E-37 291.6 28.3 345 132-529 37-464 (500)
62 1q0u_A Bstdead; DEAD protein, 100.0 2.5E-33 8.7E-38 261.4 21.0 206 110-346 4-212 (219)
63 1qde_A EIF4A, translation init 100.0 7.2E-33 2.5E-37 259.4 24.1 208 105-345 9-216 (224)
64 3ber_A Probable ATP-dependent 100.0 7.5E-33 2.6E-37 262.8 22.4 205 109-345 42-247 (249)
65 1wrb_A DJVLGB; RNA helicase, D 100.0 6.9E-33 2.4E-37 264.5 22.0 226 102-346 13-240 (253)
66 3dkp_A Probable ATP-dependent 100.0 4.7E-33 1.6E-37 264.4 20.3 217 101-346 16-241 (245)
67 2pl3_A Probable ATP-dependent 100.0 1.9E-32 6.5E-37 258.7 24.2 210 107-345 22-232 (236)
68 2gxq_A Heat resistant RNA depe 100.0 3.5E-32 1.2E-36 251.5 25.4 203 111-344 2-204 (207)
69 3jux_A Protein translocase sub 100.0 5.8E-32 2E-36 279.1 28.7 337 127-523 71-590 (822)
70 3ly5_A ATP-dependent RNA helic 100.0 1.4E-32 4.7E-37 263.0 22.5 206 109-342 51-259 (262)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.5E-31 1.5E-35 292.4 26.0 344 119-519 251-708 (1038)
72 3mwy_W Chromo domain-containin 100.0 1.1E-30 3.9E-35 287.8 28.8 367 132-537 236-703 (800)
73 1z3i_X Similar to RAD54-like; 100.0 5E-30 1.7E-34 275.7 32.7 367 132-533 55-543 (644)
74 1c4o_A DNA nucleotide excision 100.0 1.2E-28 4.1E-33 264.5 24.6 116 412-528 438-558 (664)
75 2hjv_A ATP-dependent RNA helic 100.0 3.7E-28 1.3E-32 214.7 19.7 155 385-539 7-161 (163)
76 2ipc_A Preprotein translocase 100.0 3.9E-27 1.3E-31 247.7 29.0 131 127-280 75-215 (997)
77 3eaq_A Heat resistant RNA depe 100.0 3.6E-28 1.2E-32 224.2 17.7 166 388-553 6-171 (212)
78 2rb4_A ATP-dependent RNA helic 100.0 6.2E-28 2.1E-32 216.1 18.6 161 386-546 6-173 (175)
79 2d7d_A Uvrabc system protein B 100.0 2.5E-27 8.4E-32 254.2 26.4 115 412-527 444-563 (661)
80 1fuk_A Eukaryotic initiation f 100.0 2E-27 6.8E-32 210.6 19.7 157 387-543 3-160 (165)
81 1t5i_A C_terminal domain of A 100.0 1.4E-27 4.8E-32 212.6 17.1 157 386-542 4-161 (172)
82 3i32_A Heat resistant RNA depe 99.9 2.6E-27 8.9E-32 228.5 17.2 166 388-553 3-168 (300)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.1E-26 3.8E-31 209.2 15.5 154 385-538 17-171 (185)
84 2p6n_A ATP-dependent RNA helic 99.9 6.6E-26 2.3E-30 205.0 15.9 149 386-535 28-177 (191)
85 2yjt_D ATP-dependent RNA helic 99.9 1.9E-27 6.6E-32 211.7 0.0 156 388-543 4-160 (170)
86 3llm_A ATP-dependent RNA helic 99.9 8.4E-23 2.9E-27 191.9 15.6 185 118-342 47-233 (235)
87 3b6e_A Interferon-induced heli 99.9 8.9E-23 3.1E-27 189.5 12.8 177 131-324 32-216 (216)
88 2vl7_A XPD; helicase, unknown 99.9 1.8E-21 6.1E-26 204.8 13.5 109 403-518 375-519 (540)
89 1rif_A DAR protein, DNA helica 99.8 1.6E-21 5.4E-26 188.7 9.4 154 132-329 113-266 (282)
90 3crv_A XPD/RAD3 related DNA he 99.8 8E-19 2.7E-23 185.4 30.0 132 129-281 1-187 (551)
91 2fz4_A DNA repair protein RAD2 99.8 3.7E-19 1.3E-23 166.7 13.2 139 132-328 93-231 (237)
92 1z5z_A Helicase of the SNF2/RA 99.8 1.5E-18 5.1E-23 165.3 14.0 135 397-531 94-237 (271)
93 4a15_A XPD helicase, ATP-depen 99.7 2.3E-16 7.8E-21 167.8 22.2 111 403-518 439-582 (620)
94 1w36_D RECD, exodeoxyribonucle 98.7 3.4E-08 1.2E-12 105.0 9.4 67 134-214 151-219 (608)
95 4b3f_X DNA-binding protein smu 98.1 5.5E-06 1.9E-10 88.9 9.7 67 132-214 189-256 (646)
96 3lfu_A DNA helicase II; SF1 he 98.1 0.0003 1E-08 75.7 21.6 72 132-217 9-80 (647)
97 3e1s_A Exodeoxyribonuclease V, 98.0 1.2E-05 4.1E-10 84.4 9.7 64 132-211 189-252 (574)
98 3upu_A ATP-dependent DNA helic 98.0 1.1E-05 3.9E-10 82.8 8.4 70 126-211 19-94 (459)
99 2gk6_A Regulator of nonsense t 98.0 3.6E-05 1.2E-09 82.1 12.5 68 131-213 179-246 (624)
100 2xzl_A ATP-dependent helicase 97.9 3.9E-05 1.3E-09 83.7 11.5 70 130-214 358-427 (802)
101 2wjy_A Regulator of nonsense t 97.9 8.5E-05 2.9E-09 81.0 12.6 68 131-213 355-422 (800)
102 3hgt_A HDA1 complex subunit 3; 97.8 0.00034 1.2E-08 66.6 13.4 120 397-521 107-238 (328)
103 2orw_A Thymidine kinase; TMTK, 97.3 0.00063 2.2E-08 60.0 8.4 39 147-201 3-41 (184)
104 2o0j_A Terminase, DNA packagin 97.2 0.0055 1.9E-07 60.4 14.2 71 132-216 163-233 (385)
105 2b8t_A Thymidine kinase; deoxy 97.1 0.00067 2.3E-08 61.6 6.6 101 147-291 12-112 (223)
106 1xx6_A Thymidine kinase; NESG, 97.1 0.0014 4.8E-08 58.0 8.4 39 147-201 8-46 (191)
107 2j9r_A Thymidine kinase; TK1, 97.1 0.0013 4.4E-08 58.8 7.8 40 147-202 28-67 (214)
108 3cpe_A Terminase, DNA packagin 96.9 0.015 5.2E-07 61.3 15.8 74 132-219 163-236 (592)
109 3ec2_A DNA replication protein 96.9 0.0043 1.5E-07 54.4 9.5 34 134-167 16-58 (180)
110 3vkw_A Replicase large subunit 96.8 0.0023 7.8E-08 63.9 7.9 93 148-288 162-254 (446)
111 2kjq_A DNAA-related protein; s 96.7 0.0023 8E-08 54.2 6.0 21 146-166 35-55 (149)
112 2orv_A Thymidine kinase; TP4A 96.7 0.0045 1.6E-07 55.8 8.0 40 147-202 19-58 (234)
113 1w4r_A Thymidine kinase; type 96.6 0.0038 1.3E-07 54.8 6.7 38 147-200 20-57 (195)
114 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0018 6E-08 57.8 4.6 99 146-292 27-125 (219)
115 2zpa_A Uncharacterized protein 96.3 0.0099 3.4E-07 62.5 8.9 57 132-207 175-233 (671)
116 3kl4_A SRP54, signal recogniti 96.1 0.034 1.2E-06 55.6 11.5 54 266-336 178-234 (433)
117 1l8q_A Chromosomal replication 96.1 0.04 1.4E-06 53.2 11.7 21 147-167 37-57 (324)
118 1uaa_A REP helicase, protein ( 96.0 0.0069 2.4E-07 65.2 6.1 72 132-217 2-73 (673)
119 1pjr_A PCRA; DNA repair, DNA r 95.9 0.012 4.2E-07 63.8 7.8 71 132-216 11-81 (724)
120 3te6_A Regulatory protein SIR3 95.9 0.12 4.2E-06 49.3 13.6 25 147-172 45-69 (318)
121 3u4q_A ATP-dependent helicase/ 95.8 0.016 5.4E-07 66.7 8.4 72 132-215 10-81 (1232)
122 1d2n_A N-ethylmaleimide-sensit 95.7 0.077 2.6E-06 49.7 11.6 20 148-167 65-84 (272)
123 3h4m_A Proteasome-activating n 95.7 0.038 1.3E-06 52.3 9.3 56 108-166 12-70 (285)
124 2chg_A Replication factor C sm 95.5 0.14 5E-06 45.7 12.2 20 148-167 39-58 (226)
125 3vfd_A Spastin; ATPase, microt 95.5 0.049 1.7E-06 54.2 9.6 21 147-167 148-168 (389)
126 1a5t_A Delta prime, HOLB; zinc 95.4 0.051 1.7E-06 52.8 9.3 37 134-170 4-47 (334)
127 1jbk_A CLPB protein; beta barr 95.4 0.31 1.1E-05 42.3 13.7 21 148-168 44-64 (195)
128 2q6t_A DNAB replication FORK h 95.2 0.17 5.8E-06 51.2 12.9 53 145-213 198-250 (444)
129 2zan_A Vacuolar protein sortin 95.2 0.15 5.1E-06 51.6 12.4 58 107-167 128-187 (444)
130 2v1u_A Cell division control p 95.2 0.092 3.1E-06 51.9 10.6 22 147-168 44-65 (387)
131 3eie_A Vacuolar protein sortin 95.2 0.079 2.7E-06 51.1 9.8 58 108-172 13-75 (322)
132 3bos_A Putative DNA replicatio 95.2 0.041 1.4E-06 50.3 7.4 23 146-168 51-73 (242)
133 2p65_A Hypothetical protein PF 95.1 0.22 7.7E-06 43.0 11.9 23 147-169 43-65 (187)
134 1fnn_A CDC6P, cell division co 95.1 0.063 2.1E-06 53.2 9.1 23 149-172 46-68 (389)
135 3dm5_A SRP54, signal recogniti 95.0 0.13 4.5E-06 51.4 10.9 50 148-213 101-152 (443)
136 3u61_B DNA polymerase accessor 94.9 0.081 2.8E-06 51.0 8.9 29 266-294 104-132 (324)
137 3bh0_A DNAB-like replicative h 94.7 0.26 8.9E-06 47.2 12.0 56 144-216 65-120 (315)
138 2z4s_A Chromosomal replication 94.7 0.17 5.9E-06 51.1 11.1 19 147-165 130-148 (440)
139 2r6a_A DNAB helicase, replicat 94.5 0.21 7.2E-06 50.7 11.3 52 144-211 200-251 (454)
140 4a1f_A DNAB helicase, replicat 94.5 0.041 1.4E-06 53.2 5.7 54 144-214 43-96 (338)
141 1g5t_A COB(I)alamin adenosyltr 94.2 0.12 3.9E-06 45.5 7.4 37 148-200 29-65 (196)
142 2z43_A DNA repair and recombin 94.0 0.3 1E-05 47.0 10.8 27 146-172 106-132 (324)
143 2qby_B CDC6 homolog 3, cell di 93.9 0.081 2.8E-06 52.3 6.7 21 148-168 46-66 (384)
144 1njg_A DNA polymerase III subu 93.6 0.48 1.6E-05 42.8 11.1 20 149-168 47-66 (250)
145 2bjv_A PSP operon transcriptio 93.6 0.23 8E-06 46.1 8.9 20 146-165 28-47 (265)
146 1gm5_A RECG; helicase, replica 93.5 0.18 6E-06 54.7 8.7 76 412-487 416-496 (780)
147 2qp9_X Vacuolar protein sortin 93.3 0.27 9.3E-06 48.0 9.1 25 147-172 84-108 (355)
148 3hjh_A Transcription-repair-co 93.3 0.33 1.1E-05 49.4 9.8 73 402-487 372-444 (483)
149 3hu3_A Transitional endoplasmi 93.0 0.33 1.1E-05 49.6 9.5 19 147-165 238-256 (489)
150 1sxj_A Activator 1 95 kDa subu 92.9 0.48 1.6E-05 48.9 10.7 20 148-167 78-97 (516)
151 2zr9_A Protein RECA, recombina 92.9 0.16 5.3E-06 49.5 6.5 27 146-172 60-86 (349)
152 3pfi_A Holliday junction ATP-d 92.9 0.24 8.3E-06 47.9 8.0 20 148-167 56-75 (338)
153 1cr0_A DNA primase/helicase; R 92.8 0.33 1.1E-05 46.0 8.7 28 144-171 32-59 (296)
154 1iqp_A RFCS; clamp loader, ext 92.8 0.43 1.5E-05 45.7 9.7 19 149-167 48-66 (327)
155 3bgw_A DNAB-like replicative h 92.8 0.59 2E-05 47.1 10.9 54 144-214 194-247 (444)
156 2qby_A CDC6 homolog 1, cell di 92.8 0.44 1.5E-05 46.8 9.9 20 147-166 45-64 (386)
157 3pvs_A Replication-associated 92.5 0.13 4.4E-06 52.0 5.6 19 148-166 51-69 (447)
158 1n0w_A DNA repair protein RAD5 92.2 0.43 1.5E-05 43.4 8.5 29 144-172 21-49 (243)
159 1q57_A DNA primase/helicase; d 91.9 0.71 2.4E-05 47.4 10.5 54 144-213 239-292 (503)
160 1sxj_C Activator 1 40 kDa subu 91.8 0.77 2.6E-05 44.4 10.1 19 150-168 49-67 (340)
161 3oiy_A Reverse gyrase helicase 91.6 0.44 1.5E-05 47.6 8.3 77 411-487 62-145 (414)
162 1sxj_E Activator 1 40 kDa subu 91.5 0.63 2.1E-05 45.2 9.1 28 266-294 133-160 (354)
163 2i1q_A DNA repair and recombin 91.2 0.96 3.3E-05 43.3 10.0 25 147-171 98-122 (322)
164 2hjv_A ATP-dependent RNA helic 90.9 0.68 2.3E-05 39.3 7.7 74 192-276 36-112 (163)
165 1vma_A Cell division protein F 90.8 0.99 3.4E-05 42.8 9.4 24 147-170 104-127 (306)
166 3lda_A DNA repair protein RAD5 90.6 0.88 3E-05 45.0 9.1 26 147-172 178-203 (400)
167 1v5w_A DMC1, meiotic recombina 90.4 1 3.6E-05 43.6 9.4 26 147-172 122-147 (343)
168 2p6n_A ATP-dependent RNA helic 90.4 1.8 6.1E-05 37.8 10.1 72 192-274 55-129 (191)
169 3n70_A Transport activator; si 90.3 0.22 7.6E-06 41.4 4.0 21 145-165 22-42 (145)
170 2jgn_A DBX, DDX3, ATP-dependen 90.2 0.95 3.2E-05 39.4 8.2 73 190-273 45-120 (185)
171 1w5s_A Origin recognition comp 90.2 2.1 7.3E-05 42.3 11.9 21 148-168 51-73 (412)
172 3co5_A Putative two-component 90.2 0.19 6.6E-06 41.7 3.4 20 144-163 24-43 (143)
173 1fuk_A Eukaryotic initiation f 90.1 1.1 3.7E-05 38.1 8.3 75 191-276 30-107 (165)
174 1hqc_A RUVB; extended AAA-ATPa 90.0 0.35 1.2E-05 46.4 5.7 20 147-166 38-57 (324)
175 1sxj_B Activator 1 37 kDa subu 89.5 0.63 2.2E-05 44.4 7.1 20 149-168 44-63 (323)
176 2w58_A DNAI, primosome compone 89.4 0.42 1.4E-05 42.2 5.3 21 148-168 55-75 (202)
177 4a74_A DNA repair and recombin 89.3 3 0.0001 37.2 11.2 25 144-168 22-46 (231)
178 2gno_A DNA polymerase III, gam 89.0 1.6 5.5E-05 41.4 9.3 21 148-168 19-39 (305)
179 2l8b_A Protein TRAI, DNA helic 88.7 0.43 1.5E-05 41.0 4.4 61 133-208 35-97 (189)
180 2rb4_A ATP-dependent RNA helic 88.7 1.4 4.7E-05 37.8 7.9 73 191-274 34-109 (175)
181 2fna_A Conserved hypothetical 88.6 8.9 0.0003 36.6 14.8 32 135-167 19-50 (357)
182 1jr3_A DNA polymerase III subu 88.6 1.9 6.6E-05 42.0 10.0 23 149-172 40-62 (373)
183 2dr3_A UPF0273 protein PH0284; 88.3 0.37 1.3E-05 44.0 4.2 51 145-212 21-71 (247)
184 3cmu_A Protein RECA, recombina 88.1 0.46 1.6E-05 56.4 5.7 40 147-202 1427-1466(2050)
185 2oap_1 GSPE-2, type II secreti 87.7 1.1 3.8E-05 45.9 7.7 46 124-172 238-284 (511)
186 4b4t_M 26S protease regulatory 87.2 0.38 1.3E-05 48.0 3.8 63 106-172 174-239 (434)
187 1ls1_A Signal recognition part 87.0 5.5 0.00019 37.4 11.7 25 146-170 97-121 (295)
188 3eaq_A Heat resistant RNA depe 86.6 2.2 7.6E-05 37.9 8.3 72 191-273 31-105 (212)
189 1t5i_A C_terminal domain of A 86.5 1.7 5.8E-05 37.1 7.2 73 192-275 32-107 (172)
190 3cf2_A TER ATPase, transitiona 86.0 2.2 7.4E-05 46.2 9.0 23 148-171 239-261 (806)
191 4ddu_A Reverse gyrase; topoiso 85.7 1.2 4.2E-05 50.3 7.3 76 411-487 119-202 (1104)
192 2eyq_A TRCF, transcription-rep 85.5 1.4 4.7E-05 50.2 7.7 76 411-486 650-730 (1151)
193 1tue_A Replication protein E1; 85.3 1.1 3.7E-05 39.6 5.2 50 120-172 29-82 (212)
194 1oyw_A RECQ helicase, ATP-depe 84.5 1.8 6.2E-05 44.6 7.5 59 413-471 65-123 (523)
195 3io5_A Recombination and repai 84.3 0.79 2.7E-05 43.5 4.1 41 149-203 30-70 (333)
196 2zts_A Putative uncharacterize 84.1 0.44 1.5E-05 43.6 2.4 51 147-213 30-80 (251)
197 2v1x_A ATP-dependent DNA helic 84.1 1.9 6.4E-05 45.2 7.4 59 413-471 84-144 (591)
198 3e70_C DPA, signal recognition 83.9 4.3 0.00015 38.8 9.3 52 268-336 212-264 (328)
199 1e9r_A Conjugal transfer prote 83.7 0.72 2.5E-05 46.4 4.0 44 146-205 52-95 (437)
200 1p9r_A General secretion pathw 83.5 1.3 4.3E-05 44.2 5.5 36 136-172 154-191 (418)
201 3b85_A Phosphate starvation-in 83.5 0.98 3.4E-05 40.2 4.3 35 130-164 5-39 (208)
202 1t6n_A Probable ATP-dependent 82.4 5 0.00017 35.6 8.7 72 413-487 82-164 (220)
203 3cf0_A Transitional endoplasmi 82.3 0.61 2.1E-05 44.3 2.6 54 109-165 11-67 (301)
204 2qmh_A HPR kinase/phosphorylas 82.2 0.63 2.2E-05 40.8 2.4 22 147-168 34-55 (205)
205 3ber_A Probable ATP-dependent 82.1 6.6 0.00022 35.7 9.6 72 412-487 110-192 (249)
206 1xwi_A SKD1 protein; VPS4B, AA 81.9 0.97 3.3E-05 43.3 3.9 54 109-168 8-66 (322)
207 1u0j_A DNA replication protein 81.9 2.2 7.7E-05 39.3 6.1 47 119-168 73-125 (267)
208 2i4i_A ATP-dependent RNA helic 81.8 9.7 0.00033 37.4 11.5 73 190-273 275-350 (417)
209 4b4t_I 26S protease regulatory 81.6 1 3.5E-05 44.6 3.9 62 107-172 176-240 (437)
210 4b4t_J 26S protease regulatory 81.5 0.93 3.2E-05 44.6 3.6 62 107-172 142-206 (405)
211 2ffh_A Protein (FFH); SRP54, s 81.5 17 0.00059 36.0 12.8 26 147-172 98-123 (425)
212 1kgd_A CASK, peripheral plasma 81.4 0.86 2.9E-05 39.4 3.0 21 146-166 4-24 (180)
213 3vaa_A Shikimate kinase, SK; s 81.3 0.85 2.9E-05 40.1 3.0 23 146-168 24-46 (199)
214 4ag6_A VIRB4 ATPase, type IV s 81.3 1.4 4.7E-05 43.6 4.9 42 146-203 34-75 (392)
215 3iij_A Coilin-interacting nucl 81.2 0.93 3.2E-05 39.0 3.2 23 145-167 9-31 (180)
216 3a8t_A Adenylate isopentenyltr 81.1 0.79 2.7E-05 43.9 2.8 21 148-168 41-61 (339)
217 2j37_W Signal recognition part 80.4 13 0.00046 37.7 11.8 24 149-172 103-126 (504)
218 3hws_A ATP-dependent CLP prote 80.3 2.3 8E-05 41.4 6.1 22 146-167 50-71 (363)
219 3lw7_A Adenylate kinase relate 80.2 0.72 2.5E-05 39.3 2.1 20 148-167 2-21 (179)
220 2w0m_A SSO2452; RECA, SSPF, un 80.1 0.97 3.3E-05 40.6 3.1 28 144-171 20-47 (235)
221 3trf_A Shikimate kinase, SK; a 80.0 1 3.4E-05 39.0 3.0 22 147-168 5-26 (185)
222 2r44_A Uncharacterized protein 79.6 1.3 4.4E-05 42.6 3.9 24 142-165 41-64 (331)
223 2ze6_A Isopentenyl transferase 79.6 0.95 3.2E-05 41.7 2.8 20 149-168 3-22 (253)
224 2qgz_A Helicase loader, putati 79.5 1.6 5.5E-05 41.5 4.4 21 147-167 152-172 (308)
225 3foz_A TRNA delta(2)-isopenten 79.4 0.95 3.3E-05 42.8 2.8 20 149-168 12-31 (316)
226 1c4o_A DNA nucleotide excision 79.4 11 0.00037 40.0 11.3 78 190-278 438-518 (664)
227 3exa_A TRNA delta(2)-isopenten 79.4 0.96 3.3E-05 42.8 2.8 20 149-168 5-24 (322)
228 1u94_A RECA protein, recombina 79.3 1.3 4.3E-05 43.1 3.7 27 146-172 62-88 (356)
229 2eyu_A Twitching motility prot 79.3 0.92 3.1E-05 42.0 2.6 21 144-164 22-42 (261)
230 1hv8_A Putative ATP-dependent 79.1 5.6 0.00019 38.2 8.5 75 190-275 237-314 (367)
231 4b4t_H 26S protease regulatory 79.1 0.97 3.3E-05 45.2 2.8 62 107-172 203-267 (467)
232 1qhx_A CPT, protein (chloramph 78.9 1.2 4E-05 38.2 3.0 21 147-167 3-23 (178)
233 3fe2_A Probable ATP-dependent 78.9 6.3 0.00021 35.6 8.2 72 412-487 101-182 (242)
234 2j41_A Guanylate kinase; GMP, 78.9 1.1 3.8E-05 39.4 3.0 22 145-166 4-25 (207)
235 3tau_A Guanylate kinase, GMP k 78.9 1.1 3.9E-05 39.7 3.0 22 146-167 7-28 (208)
236 4b4t_L 26S protease subunit RP 78.7 0.91 3.1E-05 45.3 2.5 62 107-172 175-239 (437)
237 2yjt_D ATP-dependent RNA helic 80.0 0.41 1.4E-05 41.0 0.0 74 191-275 30-106 (170)
238 3jvv_A Twitching mobility prot 78.6 2.1 7.2E-05 41.6 5.0 26 146-172 122-147 (356)
239 2qor_A Guanylate kinase; phosp 78.5 1.2 4.2E-05 39.3 3.1 24 144-167 9-32 (204)
240 3hr8_A Protein RECA; alpha and 78.4 1 3.6E-05 43.6 2.8 41 147-203 61-101 (356)
241 3nbx_X ATPase RAVA; AAA+ ATPas 78.2 2.3 7.9E-05 43.3 5.4 28 137-164 31-58 (500)
242 4b4t_K 26S protease regulatory 78.2 1 3.4E-05 44.9 2.6 62 107-172 166-230 (428)
243 2gza_A Type IV secretion syste 78.2 1.2 4.3E-05 43.3 3.3 27 144-171 172-198 (361)
244 2r8r_A Sensor protein; KDPD, P 78.1 1.6 5.5E-05 39.1 3.7 24 149-172 8-31 (228)
245 2d7d_A Uvrabc system protein B 77.8 23 0.00079 37.5 13.2 78 190-278 444-524 (661)
246 1y63_A LMAJ004144AAA protein; 77.8 1.3 4.5E-05 38.3 3.0 23 146-168 9-31 (184)
247 1kht_A Adenylate kinase; phosp 77.8 1.3 4.3E-05 38.5 2.9 22 147-168 3-24 (192)
248 2px0_A Flagellar biosynthesis 77.7 1.6 5.6E-05 41.1 3.9 25 146-170 104-128 (296)
249 3i5x_A ATP-dependent RNA helic 77.3 5.2 0.00018 41.5 8.1 79 190-276 338-419 (563)
250 1ojl_A Transcriptional regulat 77.3 1.6 5.4E-05 41.5 3.7 20 146-165 24-43 (304)
251 1zp6_A Hypothetical protein AT 77.3 1 3.5E-05 39.2 2.2 22 144-165 6-27 (191)
252 2l82_A Designed protein OR32; 77.2 11 0.00037 28.5 7.3 51 416-466 5-55 (162)
253 1lvg_A Guanylate kinase, GMP k 77.1 1.4 4.8E-05 38.7 3.1 20 146-165 3-22 (198)
254 3syl_A Protein CBBX; photosynt 77.0 1.2 4.2E-05 42.1 2.8 21 147-167 67-87 (309)
255 1kag_A SKI, shikimate kinase I 76.8 1.5 5.2E-05 37.3 3.2 20 147-166 4-23 (173)
256 3crm_A TRNA delta(2)-isopenten 76.8 1.3 4.3E-05 42.3 2.8 20 149-168 7-26 (323)
257 3sr0_A Adenylate kinase; phosp 76.7 1.4 4.7E-05 39.1 2.8 22 148-169 1-22 (206)
258 1ofh_A ATP-dependent HSL prote 76.7 5 0.00017 37.6 7.2 20 147-166 50-69 (310)
259 3tr0_A Guanylate kinase, GMP k 76.5 1.4 4.9E-05 38.6 3.0 21 146-166 6-26 (205)
260 3d3q_A TRNA delta(2)-isopenten 76.0 1.4 4.7E-05 42.4 2.8 20 149-168 9-28 (340)
261 3kb2_A SPBC2 prophage-derived 75.9 1.5 5.1E-05 37.2 2.8 19 149-167 3-21 (173)
262 2qz4_A Paraplegin; AAA+, SPG7, 75.9 1.4 4.8E-05 40.5 2.8 20 147-166 39-58 (262)
263 3fb4_A Adenylate kinase; psych 75.8 1.5 5E-05 39.1 2.8 20 149-168 2-21 (216)
264 1xti_A Probable ATP-dependent 75.7 6.7 0.00023 38.2 8.0 76 191-277 250-328 (391)
265 1ly1_A Polynucleotide kinase; 75.6 1.5 5.1E-05 37.5 2.8 20 149-168 4-23 (181)
266 3ney_A 55 kDa erythrocyte memb 75.6 1.7 5.7E-05 38.2 3.0 22 145-166 17-38 (197)
267 1xp8_A RECA protein, recombina 75.5 1.8 6.2E-05 42.2 3.6 27 146-172 73-99 (366)
268 3cm0_A Adenylate kinase; ATP-b 75.4 1.2 4E-05 38.6 2.0 23 146-168 3-25 (186)
269 3dl0_A Adenylate kinase; phosp 75.3 1.5 5.2E-05 39.0 2.8 21 148-168 1-21 (216)
270 2r2a_A Uncharacterized protein 74.9 1.7 6E-05 38.2 3.0 24 148-171 6-29 (199)
271 3b9p_A CG5977-PA, isoform A; A 74.9 1.5 5.3E-05 41.2 2.9 56 108-166 16-73 (297)
272 2pt7_A CAG-ALFA; ATPase, prote 74.8 1.3 4.4E-05 42.6 2.3 27 144-171 168-194 (330)
273 1nlf_A Regulatory protein REPA 74.7 3.8 0.00013 38.1 5.5 29 142-170 25-53 (279)
274 1lv7_A FTSH; alpha/beta domain 74.4 1.6 5.5E-05 40.1 2.8 18 148-165 46-63 (257)
275 1vec_A ATP-dependent RNA helic 74.2 28 0.00096 30.0 11.0 72 412-487 70-152 (206)
276 1ixz_A ATP-dependent metallopr 74.1 1.6 5.4E-05 40.0 2.7 54 108-164 11-66 (254)
277 2oca_A DAR protein, ATP-depend 74.0 20 0.00067 36.5 11.3 76 192-277 348-426 (510)
278 2gxq_A Heat resistant RNA depe 73.8 9.2 0.00031 33.3 7.7 72 412-487 71-150 (207)
279 2x8a_A Nuclear valosin-contain 73.6 1 3.4E-05 42.1 1.2 54 108-164 5-61 (274)
280 4gp7_A Metallophosphoesterase; 73.5 1.2 4E-05 38.2 1.5 20 146-165 8-27 (171)
281 3sqw_A ATP-dependent RNA helic 73.4 3.9 0.00013 42.7 5.8 80 190-277 287-369 (579)
282 1ex7_A Guanylate kinase; subst 73.4 1.6 5.5E-05 37.9 2.4 19 148-166 2-20 (186)
283 3uk6_A RUVB-like 2; hexameric 73.4 1.7 5.8E-05 42.4 2.8 25 147-172 70-94 (368)
284 1yks_A Genome polyprotein [con 73.3 4.2 0.00014 40.8 5.8 69 191-272 177-245 (440)
285 3i32_A Heat resistant RNA depe 73.2 2.8 9.5E-05 39.6 4.2 72 191-273 28-102 (300)
286 3fht_A ATP-dependent RNA helic 73.1 4 0.00014 40.1 5.6 73 191-274 266-341 (412)
287 2yvu_A Probable adenylyl-sulfa 73.1 2.5 8.4E-05 36.5 3.6 23 146-168 12-34 (186)
288 2v54_A DTMP kinase, thymidylat 73.0 1.9 6.6E-05 37.7 2.9 23 146-168 3-25 (204)
289 3t15_A Ribulose bisphosphate c 72.9 1.7 5.8E-05 41.0 2.6 24 148-172 37-60 (293)
290 2c95_A Adenylate kinase 1; tra 72.9 2 7E-05 37.3 3.0 24 145-168 7-30 (196)
291 2pt5_A Shikimate kinase, SK; a 72.8 1.9 6.7E-05 36.3 2.8 21 148-168 1-21 (168)
292 1z6g_A Guanylate kinase; struc 72.8 2.3 7.7E-05 38.0 3.3 21 144-164 20-40 (218)
293 2ewv_A Twitching motility prot 72.8 1.6 5.6E-05 42.7 2.5 21 144-164 133-153 (372)
294 2v6i_A RNA helicase; membrane, 72.7 5.5 0.00019 39.8 6.5 55 191-251 171-225 (431)
295 1s2m_A Putative ATP-dependent 72.6 9.6 0.00033 37.2 8.2 73 191-274 258-333 (400)
296 1wp9_A ATP-dependent RNA helic 72.5 6.1 0.00021 39.6 7.0 77 190-277 360-447 (494)
297 1zuh_A Shikimate kinase; alpha 72.5 2 7E-05 36.3 2.8 21 148-168 8-28 (168)
298 3a00_A Guanylate kinase, GMP k 72.3 2.3 8E-05 36.7 3.2 18 148-165 2-19 (186)
299 3t61_A Gluconokinase; PSI-biol 72.3 2.1 7.2E-05 37.5 3.0 20 148-167 19-38 (202)
300 2qt1_A Nicotinamide riboside k 72.2 1.4 4.7E-05 39.0 1.7 25 142-166 16-40 (207)
301 1via_A Shikimate kinase; struc 72.2 2.2 7.6E-05 36.4 3.0 20 149-168 6-25 (175)
302 4eun_A Thermoresistant glucoki 72.0 2.2 7.6E-05 37.4 3.0 21 146-166 28-48 (200)
303 2iyv_A Shikimate kinase, SK; t 71.8 2.4 8.4E-05 36.4 3.2 21 148-168 3-23 (184)
304 4akg_A Glutathione S-transfera 71.8 3.6 0.00012 50.7 5.6 50 118-168 891-944 (2695)
305 2oxc_A Probable ATP-dependent 71.8 6.4 0.00022 35.2 6.2 70 412-486 91-171 (230)
306 1knq_A Gluconate kinase; ALFA/ 71.7 1.9 6.7E-05 36.7 2.5 20 147-166 8-27 (175)
307 1um8_A ATP-dependent CLP prote 71.6 2.2 7.5E-05 41.8 3.2 21 147-167 72-92 (376)
308 1tev_A UMP-CMP kinase; ploop, 71.6 1.9 6.4E-05 37.4 2.5 20 148-167 4-23 (196)
309 2cvh_A DNA repair and recombin 71.6 2.1 7.3E-05 37.9 2.9 25 145-169 18-42 (220)
310 2wv9_A Flavivirin protease NS2 71.6 5.1 0.00018 42.6 6.2 70 190-272 409-478 (673)
311 3eph_A TRNA isopentenyltransfe 71.6 1.9 6.6E-05 42.3 2.7 20 149-168 4-23 (409)
312 1e6c_A Shikimate kinase; phosp 71.5 2.4 8.1E-05 36.0 3.0 21 148-168 3-23 (173)
313 1e4v_A Adenylate kinase; trans 71.2 2.1 7.2E-05 38.0 2.7 20 149-168 2-21 (214)
314 1aky_A Adenylate kinase; ATP:A 71.0 2.4 8.2E-05 37.8 3.1 22 147-168 4-25 (220)
315 3iuy_A Probable ATP-dependent 70.9 8.7 0.0003 34.2 6.9 72 412-487 93-173 (228)
316 3bor_A Human initiation factor 70.8 6.5 0.00022 35.4 6.0 73 412-487 97-179 (237)
317 1zu4_A FTSY; GTPase, signal re 70.7 2.8 9.6E-05 40.0 3.6 24 147-170 105-128 (320)
318 1zd8_A GTP:AMP phosphotransfer 70.5 2.3 7.9E-05 38.2 2.8 22 147-168 7-28 (227)
319 4fcw_A Chaperone protein CLPB; 70.4 3.3 0.00011 39.1 4.1 21 148-168 48-68 (311)
320 3pey_A ATP-dependent RNA helic 70.3 5.5 0.00019 38.8 5.8 76 191-277 243-321 (395)
321 2rhm_A Putative kinase; P-loop 70.2 2.3 7.8E-05 36.8 2.7 21 147-167 5-25 (193)
322 2cdn_A Adenylate kinase; phosp 70.2 2.6 8.9E-05 36.9 3.1 22 147-168 20-41 (201)
323 1iy2_A ATP-dependent metallopr 70.0 2.2 7.4E-05 39.8 2.6 53 109-164 36-90 (278)
324 3nwj_A ATSK2; P loop, shikimat 69.7 2.9 0.0001 38.2 3.4 22 146-167 47-68 (250)
325 2j0s_A ATP-dependent RNA helic 69.7 13 0.00043 36.5 8.4 72 192-274 277-351 (410)
326 3vkg_A Dynein heavy chain, cyt 69.6 9.7 0.00033 47.6 8.5 50 117-167 873-926 (3245)
327 3d8b_A Fidgetin-like protein 1 69.4 2.3 8E-05 41.3 2.8 21 147-167 117-137 (357)
328 3uie_A Adenylyl-sulfate kinase 69.3 2.4 8.1E-05 37.2 2.6 22 145-166 23-44 (200)
329 1sxj_D Activator 1 41 kDa subu 69.2 3.6 0.00012 39.6 4.2 19 148-166 59-77 (353)
330 2r62_A Cell division protease 69.1 1.4 4.8E-05 40.7 1.1 21 147-167 44-64 (268)
331 1m7g_A Adenylylsulfate kinase; 69.0 3.1 0.00011 36.8 3.4 32 134-166 13-44 (211)
332 2jaq_A Deoxyguanosine kinase; 69.0 2.6 8.8E-05 36.8 2.8 19 149-167 2-20 (205)
333 1rj9_A FTSY, signal recognitio 69.0 4.5 0.00015 38.2 4.6 21 147-167 102-122 (304)
334 1qf9_A UMP/CMP kinase, protein 69.0 2.5 8.6E-05 36.5 2.7 20 149-168 8-27 (194)
335 1znw_A Guanylate kinase, GMP k 69.0 2.9 9.9E-05 36.9 3.1 22 143-164 16-37 (207)
336 1zak_A Adenylate kinase; ATP:A 68.8 2.9 9.8E-05 37.3 3.1 22 147-168 5-26 (222)
337 3lnc_A Guanylate kinase, GMP k 68.4 1.9 6.6E-05 38.8 1.8 22 144-165 24-45 (231)
338 1nks_A Adenylate kinase; therm 68.4 2.6 8.8E-05 36.4 2.6 20 149-168 3-22 (194)
339 1xjc_A MOBB protein homolog; s 68.2 4.3 0.00015 34.6 3.8 18 149-166 6-23 (169)
340 2bwj_A Adenylate kinase 5; pho 68.1 2.7 9.1E-05 36.6 2.7 22 147-168 12-33 (199)
341 3be4_A Adenylate kinase; malar 68.0 2.9 9.8E-05 37.2 2.9 22 147-168 5-26 (217)
342 2c9o_A RUVB-like 1; hexameric 67.9 2.7 9.2E-05 42.4 2.9 25 147-172 63-87 (456)
343 3ly5_A ATP-dependent RNA helic 67.9 16 0.00054 33.4 8.1 72 412-487 125-207 (262)
344 3umf_A Adenylate kinase; rossm 67.9 2.5 8.5E-05 37.8 2.4 23 146-168 28-50 (217)
345 3u4q_B ATP-dependent helicase/ 67.8 3.4 0.00012 47.2 4.1 53 150-216 4-56 (1166)
346 2plr_A DTMP kinase, probable t 67.6 2.6 8.9E-05 37.1 2.5 23 146-168 3-25 (213)
347 1wrb_A DJVLGB; RNA helicase, D 67.5 14 0.00047 33.4 7.6 71 413-487 100-180 (253)
348 2ehv_A Hypothetical protein PH 67.4 2.8 9.5E-05 38.1 2.7 25 144-168 27-51 (251)
349 2bdt_A BH3686; alpha-beta prot 67.3 3 0.0001 36.0 2.8 19 149-167 4-22 (189)
350 2vli_A Antibiotic resistance p 67.1 2.5 8.7E-05 36.2 2.3 21 147-167 5-25 (183)
351 1gvn_B Zeta; postsegregational 67.1 2.6 9E-05 39.5 2.5 20 148-167 34-53 (287)
352 2pbr_A DTMP kinase, thymidylat 67.1 3 0.0001 36.0 2.8 20 149-168 2-21 (195)
353 1ak2_A Adenylate kinase isoenz 67.0 3.2 0.00011 37.4 3.1 22 147-168 16-37 (233)
354 2ius_A DNA translocase FTSK; n 66.9 7.8 0.00027 39.5 6.1 24 146-169 166-189 (512)
355 2pez_A Bifunctional 3'-phospho 66.9 2.9 9.8E-05 35.8 2.6 22 146-167 4-25 (179)
356 1ye8_A Protein THEP1, hypothet 66.8 3.2 0.00011 35.7 2.8 16 149-164 2-17 (178)
357 1f2t_A RAD50 ABC-ATPase; DNA d 66.8 2.5 8.7E-05 35.1 2.1 15 149-163 25-39 (149)
358 2xb4_A Adenylate kinase; ATP-b 66.5 3.1 0.00011 37.2 2.8 20 149-168 2-21 (223)
359 1cke_A CK, MSSA, protein (cyti 66.5 3.1 0.00011 37.2 2.8 21 148-168 6-26 (227)
360 2wwf_A Thymidilate kinase, put 66.4 3.2 0.00011 36.5 2.9 23 146-168 9-31 (212)
361 1nij_A Hypothetical protein YJ 66.4 4.2 0.00015 38.7 3.9 16 149-164 6-21 (318)
362 2xxa_A Signal recognition part 66.3 4.1 0.00014 40.7 3.8 25 148-172 101-125 (433)
363 1ukz_A Uridylate kinase; trans 66.3 3.2 0.00011 36.3 2.8 19 149-167 17-35 (203)
364 3tlx_A Adenylate kinase 2; str 66.0 3.8 0.00013 37.3 3.3 23 146-168 28-50 (243)
365 3nwn_A Kinesin-like protein KI 65.4 3.7 0.00013 39.7 3.2 24 140-163 96-121 (359)
366 1in4_A RUVB, holliday junction 65.4 3.5 0.00012 39.6 3.1 19 148-166 52-70 (334)
367 2if2_A Dephospho-COA kinase; a 65.3 3.3 0.00011 36.3 2.7 19 149-167 3-21 (204)
368 1nn5_A Similar to deoxythymidy 65.2 3.6 0.00012 36.3 3.0 23 146-168 8-30 (215)
369 3b9q_A Chloroplast SRP recepto 65.1 4 0.00014 38.5 3.4 21 146-166 99-119 (302)
370 3kjh_A CO dehydrogenase/acetyl 64.9 5.9 0.0002 35.8 4.5 23 150-172 3-25 (254)
371 2pl3_A Probable ATP-dependent 64.8 10 0.00034 34.0 6.0 71 412-487 96-177 (236)
372 1s96_A Guanylate kinase, GMP k 64.5 3.9 0.00013 36.5 3.0 21 144-164 13-33 (219)
373 1jjv_A Dephospho-COA kinase; P 64.3 3.6 0.00012 36.1 2.8 19 149-167 4-22 (206)
374 1g8p_A Magnesium-chelatase 38 64.3 2.6 9E-05 40.6 2.0 20 147-166 45-64 (350)
375 2v3c_C SRP54, signal recogniti 63.7 3 0.0001 41.6 2.3 25 148-172 100-124 (432)
376 2z0h_A DTMP kinase, thymidylat 63.7 3.9 0.00013 35.5 2.8 20 149-168 2-21 (197)
377 1bg2_A Kinesin; motor protein, 63.6 4.5 0.00015 38.6 3.4 24 140-163 69-94 (325)
378 1qde_A EIF4A, translation init 63.4 8 0.00028 34.2 5.0 71 412-487 81-161 (224)
379 3a4m_A L-seryl-tRNA(SEC) kinas 63.4 3.8 0.00013 37.7 2.8 21 148-168 5-25 (260)
380 1uf9_A TT1252 protein; P-loop, 63.4 3.7 0.00013 35.8 2.6 20 149-168 10-29 (203)
381 3tqf_A HPR(Ser) kinase; transf 63.3 3.6 0.00012 35.1 2.3 24 146-169 15-38 (181)
382 3asz_A Uridine kinase; cytidin 62.7 3.6 0.00012 36.3 2.4 18 147-164 6-23 (211)
383 3qf7_A RAD50; ABC-ATPase, ATPa 62.7 3.1 0.0001 40.6 2.1 19 149-167 25-43 (365)
384 3kta_A Chromosome segregation 62.7 4.2 0.00014 34.8 2.8 16 149-164 28-43 (182)
385 2f1r_A Molybdopterin-guanine d 62.7 3.4 0.00012 35.3 2.2 18 149-166 4-21 (171)
386 2grj_A Dephospho-COA kinase; T 62.7 4.2 0.00014 35.4 2.8 20 149-168 14-33 (192)
387 1f9v_A Kinesin-like protein KA 62.6 5.6 0.00019 38.3 3.9 25 140-164 76-102 (347)
388 2v9p_A Replication protein E1; 62.4 4.2 0.00014 38.4 2.9 20 145-164 124-143 (305)
389 3c8u_A Fructokinase; YP_612366 62.4 3.5 0.00012 36.4 2.3 19 146-164 21-39 (208)
390 3bs4_A Uncharacterized protein 62.2 7 0.00024 35.9 4.3 51 147-214 21-71 (260)
391 2xau_A PRE-mRNA-splicing facto 62.1 12 0.0004 40.6 6.8 77 191-273 303-393 (773)
392 3dc4_A Kinesin-like protein NO 62.1 4.4 0.00015 38.9 3.0 24 140-163 86-111 (344)
393 2vhj_A Ntpase P4, P4; non- hyd 62.1 3.5 0.00012 39.1 2.3 26 145-170 121-146 (331)
394 2chq_A Replication factor C sm 62.1 7 0.00024 36.8 4.5 20 149-168 40-59 (319)
395 1qvr_A CLPB protein; coiled co 61.9 54 0.0018 35.9 12.1 22 148-169 192-213 (854)
396 1goj_A Kinesin, kinesin heavy 61.7 5 0.00017 38.8 3.4 23 141-163 73-97 (355)
397 1w36_B RECB, exodeoxyribonucle 61.5 13 0.00045 42.4 7.4 64 149-216 18-81 (1180)
398 2y65_A Kinesin, kinesin heavy 61.5 5 0.00017 38.9 3.4 24 140-163 76-101 (365)
399 1g41_A Heat shock protein HSLU 61.4 4.5 0.00015 40.4 3.1 20 147-166 50-69 (444)
400 3t0q_A AGR253WP; kinesin, alph 61.4 5.6 0.00019 38.3 3.7 25 140-164 77-103 (349)
401 2vvg_A Kinesin-2; motor protei 61.4 5.1 0.00017 38.6 3.4 24 140-163 81-106 (350)
402 1j8m_F SRP54, signal recogniti 61.2 5 0.00017 37.7 3.3 25 147-171 98-122 (297)
403 4e22_A Cytidylate kinase; P-lo 61.2 4.7 0.00016 36.9 3.0 22 146-167 26-47 (252)
404 2h58_A Kinesin-like protein KI 61.1 5.2 0.00018 38.2 3.4 24 140-163 72-97 (330)
405 3f9v_A Minichromosome maintena 61.1 4.8 0.00016 42.1 3.3 15 149-163 329-343 (595)
406 2iut_A DNA translocase FTSK; n 61.1 12 0.0004 38.7 6.1 25 148-172 215-239 (574)
407 3b6u_A Kinesin-like protein KI 60.9 5 0.00017 39.0 3.2 24 140-163 93-118 (372)
408 2db3_A ATP-dependent RNA helic 60.8 23 0.00078 35.2 8.3 69 194-273 303-374 (434)
409 3cmu_A Protein RECA, recombina 60.7 6 0.00021 47.2 4.4 48 144-208 1078-1125(2050)
410 4a14_A Kinesin, kinesin-like p 60.7 5.3 0.00018 38.4 3.4 25 140-164 75-101 (344)
411 3pxg_A Negative regulator of g 60.7 5.7 0.00019 40.2 3.8 23 147-169 201-223 (468)
412 2woo_A ATPase GET3; tail-ancho 60.7 7.3 0.00025 37.2 4.4 34 149-198 21-54 (329)
413 3auy_A DNA double-strand break 60.6 3.3 0.00011 40.4 2.0 17 149-165 27-43 (371)
414 3cmw_A Protein RECA, recombina 60.6 7.1 0.00024 45.8 4.9 40 146-201 33-72 (1706)
415 3lre_A Kinesin-like protein KI 60.6 5.3 0.00018 38.6 3.3 24 140-163 97-122 (355)
416 3tif_A Uncharacterized ABC tra 60.5 3.7 0.00013 37.1 2.1 19 145-163 29-47 (235)
417 2i3b_A HCR-ntpase, human cance 60.3 5.7 0.00019 34.5 3.2 29 265-293 103-133 (189)
418 2p5t_B PEZT; postsegregational 60.3 3.9 0.00013 37.4 2.2 20 148-167 33-52 (253)
419 2og2_A Putative signal recogni 60.3 5.4 0.00019 38.6 3.4 20 147-166 157-176 (359)
420 2zfi_A Kinesin-like protein KI 60.2 5.5 0.00019 38.7 3.4 24 140-163 81-106 (366)
421 1v8k_A Kinesin-like protein KI 60.1 5.4 0.00019 39.2 3.3 25 140-164 146-172 (410)
422 1t5c_A CENP-E protein, centrom 60.1 5.3 0.00018 38.5 3.2 24 140-163 69-94 (349)
423 4etp_A Kinesin-like protein KA 59.8 5.5 0.00019 39.3 3.3 25 140-164 132-158 (403)
424 1gku_B Reverse gyrase, TOP-RG; 59.7 14 0.00047 41.7 7.0 73 412-486 98-180 (1054)
425 2nr8_A Kinesin-like protein KI 59.6 5.5 0.00019 38.5 3.2 24 140-163 95-120 (358)
426 3gbj_A KIF13B protein; kinesin 59.4 5.5 0.00019 38.5 3.2 24 140-163 84-109 (354)
427 2bbw_A Adenylate kinase 4, AK4 58.9 5.1 0.00017 36.4 2.8 20 147-166 27-46 (246)
428 1x88_A Kinesin-like protein KI 58.7 5.3 0.00018 38.7 3.0 24 140-163 80-105 (359)
429 1pzn_A RAD51, DNA repair and r 58.6 7.5 0.00026 37.5 4.1 24 147-170 131-154 (349)
430 3nh6_A ATP-binding cassette SU 58.5 4.1 0.00014 38.5 2.1 20 144-163 77-96 (306)
431 4a2w_A RIG-I, retinoic acid in 58.5 19 0.00065 39.9 7.8 80 190-276 630-721 (936)
432 4edh_A DTMP kinase, thymidylat 58.4 8.7 0.0003 34.0 4.2 24 145-168 4-27 (213)
433 1tf7_A KAIC; homohexamer, hexa 58.4 7.3 0.00025 40.0 4.2 27 144-170 278-304 (525)
434 3k1j_A LON protease, ATP-depen 58.4 7.2 0.00024 40.9 4.2 24 142-165 55-78 (604)
435 2wbe_C Bipolar kinesin KRP-130 58.3 5.6 0.00019 38.7 3.0 24 140-163 92-117 (373)
436 3u06_A Protein claret segregat 58.2 5.5 0.00019 39.3 3.0 25 140-164 130-156 (412)
437 3bfn_A Kinesin-like protein KI 58.1 5.3 0.00018 39.0 2.9 22 142-163 92-115 (388)
438 2cbz_A Multidrug resistance-as 58.1 4.3 0.00015 36.7 2.1 20 144-163 28-47 (237)
439 1vht_A Dephospho-COA kinase; s 58.1 5.4 0.00018 35.3 2.8 20 148-167 5-24 (218)
440 3cob_A Kinesin heavy chain-lik 58.0 5 0.00017 39.0 2.6 24 140-163 71-96 (369)
441 3zq6_A Putative arsenical pump 58.0 7 0.00024 37.3 3.7 24 149-172 16-39 (324)
442 2heh_A KIF2C protein; kinesin, 57.7 5.9 0.0002 38.7 3.1 25 140-164 126-152 (387)
443 2ce7_A Cell division protein F 57.1 5.3 0.00018 40.4 2.8 18 148-165 50-67 (476)
444 3p32_A Probable GTPase RV1496/ 57.0 9.1 0.00031 37.0 4.4 25 148-172 80-104 (355)
445 2rep_A Kinesin-like protein KI 57.0 6.4 0.00022 38.3 3.2 24 140-163 107-132 (376)
446 2z0m_A 337AA long hypothetical 56.7 7.3 0.00025 36.9 3.6 71 190-275 219-292 (337)
447 1sgw_A Putative ABC transporte 56.6 5.1 0.00017 35.6 2.3 30 266-295 150-179 (214)
448 3ug7_A Arsenical pump-driving 56.3 8.3 0.00028 37.2 3.9 23 150-172 29-51 (349)
449 1uj2_A Uridine-cytidine kinase 56.3 6 0.00021 36.1 2.8 19 149-167 24-42 (252)
450 2owm_A Nckin3-434, related to 56.2 6.9 0.00023 39.1 3.4 24 140-163 128-153 (443)
451 1rz3_A Hypothetical protein rb 56.1 5.9 0.0002 34.6 2.7 20 147-166 22-41 (201)
452 2lci_A Protein OR36; structura 55.9 57 0.0019 23.8 10.8 78 394-471 32-109 (134)
453 2yhs_A FTSY, cell division pro 55.9 7 0.00024 39.5 3.4 19 148-166 294-312 (503)
454 1gtv_A TMK, thymidylate kinase 55.6 3.8 0.00013 36.1 1.3 19 149-167 2-20 (214)
455 3iqw_A Tail-anchored protein t 55.5 10 0.00035 36.3 4.4 24 149-172 18-41 (334)
456 3gk5_A Uncharacterized rhodane 55.5 8.2 0.00028 29.8 3.1 37 412-448 54-90 (108)
457 3gfo_A Cobalt import ATP-bindi 55.5 4.8 0.00016 37.4 2.0 20 144-163 31-50 (275)
458 2z83_A Helicase/nucleoside tri 55.4 7 0.00024 39.4 3.4 69 191-272 190-258 (459)
459 1odf_A YGR205W, hypothetical 3 55.1 6.3 0.00022 36.9 2.8 18 148-165 32-49 (290)
460 3cmw_A Protein RECA, recombina 55.0 6.5 0.00022 46.1 3.3 44 148-207 1432-1475(1706)
461 3pxi_A Negative regulator of g 55.0 13 0.00045 40.1 5.7 20 149-168 523-542 (758)
462 2pcj_A ABC transporter, lipopr 54.9 4.3 0.00015 36.4 1.5 19 145-163 28-46 (224)
463 1ltq_A Polynucleotide kinase; 54.9 6.3 0.00022 37.0 2.8 20 149-168 4-23 (301)
464 2f6r_A COA synthase, bifunctio 54.8 6.1 0.00021 36.8 2.6 20 149-168 77-96 (281)
465 2pze_A Cystic fibrosis transme 54.8 5.1 0.00018 36.0 2.0 20 144-163 31-50 (229)
466 1htw_A HI0065; nucleotide-bind 54.6 6.3 0.00021 33.0 2.4 26 145-171 31-56 (158)
467 2ff7_A Alpha-hemolysin translo 54.6 5.2 0.00018 36.5 2.1 20 144-163 32-51 (247)
468 3ake_A Cytidylate kinase; CMP 54.5 6.8 0.00023 34.2 2.8 19 149-167 4-22 (208)
469 1byi_A Dethiobiotin synthase; 54.5 10 0.00034 33.6 4.0 32 152-199 7-38 (224)
470 2w00_A HSDR, R.ECOR124I; ATP-b 54.5 41 0.0014 37.6 9.5 26 190-215 536-561 (1038)
471 2ghi_A Transport protein; mult 54.4 5.4 0.00018 36.7 2.1 20 144-163 43-62 (260)
472 3cf2_A TER ATPase, transitiona 54.3 8.2 0.00028 41.7 3.8 58 107-167 471-531 (806)
473 3m6a_A ATP-dependent protease 54.2 6.7 0.00023 40.5 3.0 26 146-172 107-132 (543)
474 3h1t_A Type I site-specific re 53.9 23 0.00078 36.9 7.2 82 190-277 438-527 (590)
475 3foj_A Uncharacterized protein 53.9 9.1 0.00031 28.9 3.1 37 412-448 55-91 (100)
476 3qks_A DNA double-strand break 53.9 7.5 0.00026 34.1 2.9 16 149-164 25-40 (203)
477 2va8_A SSO2462, SKI2-type heli 53.9 13 0.00043 39.9 5.3 78 190-273 251-362 (715)
478 1g6h_A High-affinity branched- 53.8 4.9 0.00017 36.9 1.7 20 144-163 30-49 (257)
479 2jeo_A Uridine-cytidine kinase 53.6 6.3 0.00022 35.7 2.5 21 146-166 24-44 (245)
480 1ihu_A Arsenical pump-driving 53.3 8.8 0.0003 40.1 3.8 25 148-172 9-33 (589)
481 1ry6_A Internal kinesin; kines 53.2 7.8 0.00027 37.5 3.1 19 146-164 82-102 (360)
482 3mlq_E Transcription-repair co 53.1 3 0.0001 29.6 0.1 25 17-53 47-71 (71)
483 4g1u_C Hemin import ATP-bindin 52.9 5.6 0.00019 36.7 2.0 20 144-163 34-53 (266)
484 3r20_A Cytidylate kinase; stru 52.8 7.6 0.00026 35.0 2.8 21 147-167 9-29 (233)
485 2h92_A Cytidylate kinase; ross 52.7 8.6 0.00029 33.9 3.2 21 147-167 3-23 (219)
486 3dkp_A Probable ATP-dependent 52.5 8.1 0.00028 34.8 3.0 73 412-487 97-181 (245)
487 1np6_A Molybdopterin-guanine d 52.3 12 0.00039 32.0 3.8 16 149-164 8-23 (174)
488 1q3t_A Cytidylate kinase; nucl 52.3 8.2 0.00028 34.7 3.0 22 146-167 15-36 (236)
489 3eme_A Rhodanese-like domain p 52.1 9 0.00031 29.1 2.8 36 412-447 55-90 (103)
490 4eaq_A DTMP kinase, thymidylat 52.0 7.1 0.00024 35.0 2.5 22 146-167 25-46 (229)
491 1mv5_A LMRA, multidrug resista 51.9 5.2 0.00018 36.3 1.6 19 145-163 26-44 (243)
492 1ji0_A ABC transporter; ATP bi 51.9 6.1 0.00021 35.8 2.1 19 145-163 30-48 (240)
493 3tbk_A RIG-I helicase domain; 51.6 19 0.00066 36.8 6.1 71 413-487 52-133 (555)
494 3fmp_B ATP-dependent RNA helic 51.6 3.1 0.00011 42.2 0.0 72 190-272 332-406 (479)
495 1c9k_A COBU, adenosylcobinamid 51.5 8.2 0.00028 33.1 2.7 19 150-168 2-20 (180)
496 4akg_A Glutathione S-transfera 51.3 7 0.00024 48.2 2.9 24 144-167 1264-1287(2695)
497 3pxi_A Negative regulator of g 51.1 9.5 0.00033 41.2 3.8 23 147-169 201-223 (758)
498 1b0u_A Histidine permease; ABC 51.0 6.5 0.00022 36.2 2.1 19 145-163 30-48 (262)
499 3iwh_A Rhodanese-like domain p 50.9 9.8 0.00033 29.1 2.8 36 412-447 55-90 (103)
500 2ixe_A Antigen peptide transpo 50.8 6.6 0.00023 36.3 2.1 20 144-163 42-61 (271)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-59 Score=485.17 Aligned_cols=381 Identities=30% Similarity=0.452 Sum_probs=324.9
Q ss_pred cccccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCc
Q 008602 98 KSLEIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKD 177 (560)
Q Consensus 98 ~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~ 177 (560)
....+...|.+..+|+++++++.+++.+.+.||..|||+|.++|+.+++++|++++++||||||++|++|++..+.....
T Consensus 44 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~ 123 (434)
T 2db3_A 44 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH 123 (434)
T ss_dssp EEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCC
T ss_pred eEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccc
Confidence 34556677888999999999999999999999999999999999999999999999999999999999999988743211
Q ss_pred CCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHH
Q 008602 178 KSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEI 257 (560)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~ 257 (560)
. ....++++||++||++||.|++++++++...... .+..++||.....+...+.. .++|+|+||++|.++
T Consensus 124 ~--------~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~-~~~~~~gg~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~ 193 (434)
T 2db3_A 124 E--------LELGRPQVVIVSPTRELAIQIFNEARKFAFESYL-KIGIVYGGTSFRHQNECITR-GCHVVIATPGRLLDF 193 (434)
T ss_dssp C--------CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSC-CCCEECTTSCHHHHHHHHTT-CCSEEEECHHHHHHH
T ss_pred c--------cccCCccEEEEecCHHHHHHHHHHHHHHhccCCc-EEEEEECCCCHHHHHHHhhc-CCCEEEEChHHHHHH
Confidence 0 1234678999999999999999999998765443 36678899888887777765 468999999999999
Q ss_pred HHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcC
Q 008602 258 SAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG 337 (560)
Q Consensus 258 l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 337 (560)
+......++++++||+||||+|++++|...+..++..+.. ++.+|++++|||++..+..++..++
T Consensus 194 l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~---------------~~~~q~l~~SAT~~~~~~~~~~~~l 258 (434)
T 2db3_A 194 VDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM---------------RPEHQTLMFSATFPEEIQRMAGEFL 258 (434)
T ss_dssp HHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS---------------CSSCEEEEEESCCCHHHHHHHHTTC
T ss_pred HHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC---------------CCCceEEEEeccCCHHHHHHHHHhc
Confidence 9988888999999999999999999999999999876531 3678999999999999999999999
Q ss_pred CCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEE
Q 008602 338 HDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVI 417 (560)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~i 417 (560)
.++..+...... .....+.+.+.......+...+.+++..... ++|
T Consensus 259 ~~~~~i~~~~~~---------------------------------~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~l 304 (434)
T 2db3_A 259 KNYVFVAIGIVG---------------------------------GACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTI 304 (434)
T ss_dssp SSCEEEEESSTT---------------------------------CCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEE
T ss_pred cCCEEEEecccc---------------------------------ccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEE
Confidence 888776543210 0111234445555566788888888877644 499
Q ss_pred EEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhh
Q 008602 418 AFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHY 497 (560)
Q Consensus 418 if~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y 497 (560)
|||+++..++.++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|
T Consensus 305 VF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y 384 (434)
T 2db3_A 305 VFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDY 384 (434)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHH
T ss_pred EEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCCCcceEEEEecC-ccHHHHHHHHHHhCCCcc
Q 008602 498 AHRAGRTGRLGRRGTVVSICEE-PEVFVVKKMQKQLAVPIQ 537 (560)
Q Consensus 498 ~Qr~GR~gR~g~~g~~~~l~~~-~e~~~~~~l~~~l~~~~~ 537 (560)
+||+||+||.|+.|.|++|+++ ++...+..+.+.++...+
T Consensus 385 ~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~ 425 (434)
T 2db3_A 385 VHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQ 425 (434)
T ss_dssp HHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTC
T ss_pred HHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999984 466667777766644333
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.8e-56 Score=460.02 Aligned_cols=373 Identities=28% Similarity=0.506 Sum_probs=322.9
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
....+|+++++++.+.+.+..+||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------------ 101 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------------ 101 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------------
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------------
Confidence 34557999999999999999999999999999999999999999999999999999999999988721
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
...+.++||++||++|+.|+++++.++...... .+..+.|+.....+...+..+ ++|+|+||++|.+++......+.
T Consensus 102 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-~~ivv~Tp~~l~~~l~~~~~~~~ 178 (410)
T 2j0s_A 102 -QVRETQALILAPTRELAVQIQKGLLALGDYMNV-QCHACIGGTNVGEDIRKLDYG-QHVVAGTPGRVFDMIRRRSLRTR 178 (410)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC-CEEEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHTTSSCCT
T ss_pred -ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe-EEEEEECCCCHHHHHHHhhcC-CCEEEcCHHHHHHHHHhCCccHh
Confidence 134678999999999999999999997655443 367788888887777776654 58999999999999998888889
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
++++||+||||++.+.++...+..++..++ +..|++++|||++..+..+...++.+|..+...
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----------------PATQVVLISATLPHEILEMTNKFMTDPIRILVK 241 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSC-----------------TTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhCc-----------------cCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec
Confidence 999999999999999999988888876653 567999999999998888888888777655422
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEE-EechhhHHHHHHHHHHhcCCCeEEEEEcChhh
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYC-VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQ 425 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~ 425 (560)
... .....+.+.+. ......+...+.+++.....+++||||+++..
T Consensus 242 ~~~---------------------------------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~ 288 (410)
T 2j0s_A 242 RDE---------------------------------LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK 288 (410)
T ss_dssp GGG---------------------------------CSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHH
T ss_pred Ccc---------------------------------ccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHH
Confidence 110 01112233333 33445578888888888778899999999999
Q ss_pred HHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcccc
Q 008602 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505 (560)
Q Consensus 426 ~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~g 505 (560)
++.++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+|
T Consensus 289 ~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 289 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSG 368 (410)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCC
Q 008602 506 RLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544 (560)
Q Consensus 506 R~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~ 544 (560)
|.|++|.|++|+++.|...++.+++.++..++.++....
T Consensus 369 R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 369 RYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp GGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred CCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchh
Confidence 999999999999999999999999999999988876544
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.8e-56 Score=457.41 Aligned_cols=386 Identities=29% Similarity=0.448 Sum_probs=319.6
Q ss_pred ccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCC-
Q 008602 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKS- 179 (560)
Q Consensus 101 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~- 179 (560)
.+...|.+..+|+++++++.+.+.+...||..|||+|.++++.+++++++++++|||+|||++|++|++..+.......
T Consensus 6 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~ 85 (417)
T 2i4i_A 6 TGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEA 85 (417)
T ss_dssp ESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccch
Confidence 3456678888999999999999999999999999999999999999999999999999999999999998763211000
Q ss_pred ----CCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHH
Q 008602 180 ----SNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIA 255 (560)
Q Consensus 180 ----~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~ 255 (560)
...........++++||++||++|+.|++++++++....... +..+.||.....+...+.. .++|+|+||++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 86 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVR-PCVVYGGADIGQQIRDLER-GCHLLVATPGRLV 163 (417)
T ss_dssp HHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCC-EEEECSSSCHHHHHHHHTT-CCSEEEECHHHHH
T ss_pred hhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCce-EEEEECCCCHHHHHHHhhC-CCCEEEEChHHHH
Confidence 000000011234789999999999999999999987655443 6778888888877777655 4689999999999
Q ss_pred HHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHH
Q 008602 256 EISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARS 335 (560)
Q Consensus 256 ~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~ 335 (560)
+.+....+.+.++++|||||||++.+.+|...+..++...... .....+++++|||++..+..+...
T Consensus 164 ~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~i~~SAT~~~~~~~~~~~ 230 (417)
T 2i4i_A 164 DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP-------------PKGVRHTMMFSATFPKEIQMLARD 230 (417)
T ss_dssp HHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC-------------CBTTBEEEEEESCCCHHHHHHHHH
T ss_pred HHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC-------------CcCCcEEEEEEEeCCHHHHHHHHH
Confidence 9999888889999999999999999999999998887643210 023679999999999999999999
Q ss_pred cCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhc-CCC
Q 008602 336 WGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL-DAQ 414 (560)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~ 414 (560)
++.++..+...... .....+.+.+.......+...+.+++... .++
T Consensus 231 ~~~~~~~~~~~~~~---------------------------------~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~ 277 (417)
T 2i4i_A 231 FLDEYIFLAVGRVG---------------------------------STSENITQKVVWVEESDKRSFLLDLLNATGKDS 277 (417)
T ss_dssp HCSSCEEEEEC-------------------------------------CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTC
T ss_pred HcCCCEEEEeCCCC---------------------------------CCccCceEEEEEeccHhHHHHHHHHHHhcCCCC
Confidence 88888766533211 01123344555556677888888888875 578
Q ss_pred eEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCCh
Q 008602 415 TVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDS 494 (560)
Q Consensus 415 ~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~ 494 (560)
++||||+++..++.++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+.
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~ 357 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 357 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSH
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCC
Q 008602 495 IHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAV 534 (560)
Q Consensus 495 ~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~ 534 (560)
..|+||+||+||.|+.|.|++|+++.|...+..+.+.++.
T Consensus 358 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 358 EEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp HHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred HHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888887654
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.3e-56 Score=457.98 Aligned_cols=375 Identities=29% Similarity=0.516 Sum_probs=311.5
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
.....|+++++++.+.+.+..+||..|+++|.++++.+++++++++++|||+|||++|+++++..+..
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------ 104 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------------ 104 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------------
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------------
Confidence 34467999999999999999999999999999999999999999999999999999999999988732
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
...+.+++|++||++|+.|+++++.++...... .+...+++.+.......+..+.++|+|+||++|.+.+......+.
T Consensus 105 -~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~ 182 (414)
T 3eiq_A 105 -DLKATQALVLAPTRELAQQIQKVVMALGDYMGA-SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPK 182 (414)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC-CEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCST
T ss_pred -cCCceeEEEEeChHHHHHHHHHHHHHHhcccCc-eEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 134678999999999999999999998655443 467788898888888888878889999999999999988888889
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
++++||+||||++.+.++...+..++..+. +..|++++|||++..+..+...+..++..+...
T Consensus 183 ~~~~vViDEah~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 245 (414)
T 3eiq_A 183 YIKMFVLDEADEMLSRGFKDQIYDIFQKLN-----------------SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 245 (414)
T ss_dssp TCCEEEECSHHHHHHTTTHHHHHHHHTTSC-----------------TTCEEEEECSCCCHHHHHHHTTTCSSCEEECCC
T ss_pred cCcEEEEECHHHhhccCcHHHHHHHHHhCC-----------------CCCeEEEEEEecCHHHHHHHHHHcCCCEEEEec
Confidence 999999999999999999999988877663 678999999999999999999888887766432
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccce-EEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhh
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKH-YYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQ 425 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~ 425 (560)
.... ....+.+ +........+...+..++.....+++||||+++..
T Consensus 246 ~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~ 292 (414)
T 3eiq_A 246 KEEL---------------------------------TLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK 292 (414)
T ss_dssp CCCC---------------------------------CTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHH
T ss_pred CCcc---------------------------------CCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHH
Confidence 1100 0111222 33334445588888888888888999999999999
Q ss_pred HHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcccc
Q 008602 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505 (560)
Q Consensus 426 ~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~g 505 (560)
++.++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.|..+|+||+||+|
T Consensus 293 ~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~g 372 (414)
T 3eiq_A 293 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 372 (414)
T ss_dssp HHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-
T ss_pred HHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCc
Q 008602 506 RLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGR 545 (560)
Q Consensus 506 R~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~ 545 (560)
|.|++|.|++++++.+...++.+.+.++..++..+....+
T Consensus 373 R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 373 RFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp ------CEEEEECSTHHHHHHHHHHHTTCCCEECCC----
T ss_pred CCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhh
Confidence 9999999999999999999999999999999888765544
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4e-55 Score=447.21 Aligned_cols=371 Identities=27% Similarity=0.466 Sum_probs=323.7
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
..|+++++++.+.+.+...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.. ..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------~~ 74 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------VT 74 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC-------------CT
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc-------------cC
Confidence 46999999999999999999999999999999999999999999999999999999999988732 13
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.+.++||++||++|+.|+++++.++....+...+..+.|+.........+..+.++|+|+||++|..++......+.+++
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 154 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 154 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCS
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccC
Confidence 45679999999999999999999987766555678889998888888888888889999999999999888888889999
Q ss_pred EEEEechhhhhcc-chHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccc
Q 008602 270 FLVLDEIDELLSF-NFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348 (560)
Q Consensus 270 llIiDE~h~l~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 348 (560)
+||+||||++.+. ++...+..++...+ ...|++++|||+++....+...++.+|..+.....
T Consensus 155 ~vViDEaH~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 217 (391)
T 1xti_A 155 HFILDECDKMLEQLDMRRDVQEIFRMTP-----------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 217 (391)
T ss_dssp EEEECSHHHHTSSHHHHHHHHHHHHTSC-----------------SSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCC
T ss_pred EEEEeCHHHHhhccchHHHHHHHHhhCC-----------------CCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCc
Confidence 9999999998874 77777777776542 56799999999999999999988888876653211
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHH
Q 008602 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~ 428 (560)
.. .....+..++.......+...+..++....++++||||+++..++.
T Consensus 218 ~~--------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~ 265 (391)
T 1xti_A 218 TK--------------------------------LTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIA 265 (391)
T ss_dssp CC--------------------------------CCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHH
T ss_pred cc--------------------------------cCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHH
Confidence 00 0112334455566667788888888888888999999999999999
Q ss_pred HHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCC
Q 008602 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG 508 (560)
Q Consensus 429 ~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 508 (560)
++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+|...|+||+||+||.|
T Consensus 266 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 345 (391)
T 1xti_A 266 LAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345 (391)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSC
T ss_pred HHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEecCc-cHHHHHHHHHHhCCCccccccC
Q 008602 509 RRGTVVSICEEP-EVFVVKKMQKQLAVPIQACEFT 542 (560)
Q Consensus 509 ~~g~~~~l~~~~-e~~~~~~l~~~l~~~~~~~~~~ 542 (560)
+.|.|++++++. +...+..+.+.++.+++.++..
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 346 TKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999876 5677899999999998877654
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.7e-55 Score=448.06 Aligned_cols=372 Identities=27% Similarity=0.487 Sum_probs=321.0
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCC
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESG 187 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~ 187 (560)
...+|+++++++.+.+.+...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------------- 85 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------------- 85 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------
Confidence 3456999999999999999999999999999999999999999999999999999999999988732
Q ss_pred CCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 188 KKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 188 ~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
...+.+++|++||++|+.|+++++++++...+.. +....|+.........+ ...++|+|+||++|.+.+......+.+
T Consensus 86 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 86 KLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS-CMVTTGGTNLRDDILRL-NETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC-EEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCce-EEEEeCCcchHHHHHHh-cCCCCEEEEchHHHHHHHHhCCccccc
Confidence 1346689999999999999999999987655443 66677777766655544 345689999999999988888788899
Q ss_pred eeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecc
Q 008602 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKN 347 (560)
Q Consensus 268 l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 347 (560)
+++||+||||++.+.++...+..++..++ +..+++++|||++..+..+...++..|..+....
T Consensus 164 ~~~vIiDEaH~~~~~~~~~~~~~i~~~~~-----------------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 226 (400)
T 1s2m_A 164 CSLFIMDEADKMLSRDFKTIIEQILSFLP-----------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME 226 (400)
T ss_dssp CCEEEEESHHHHSSHHHHHHHHHHHTTSC-----------------SSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS
T ss_pred CCEEEEeCchHhhhhchHHHHHHHHHhCC-----------------cCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc
Confidence 99999999999988888888888876552 5679999999999999988888877765543211
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHH
Q 008602 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~ 427 (560)
. .....+..++.......+...+..++.....+++||||+++..++
T Consensus 227 ~----------------------------------~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~ 272 (400)
T 1s2m_A 227 E----------------------------------LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVE 272 (400)
T ss_dssp S----------------------------------CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHH
T ss_pred c----------------------------------cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHH
Confidence 0 011233445556666778888888888888899999999999999
Q ss_pred HHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCC
Q 008602 428 DAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 428 ~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~ 507 (560)
.++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+|...|+||+||+||.
T Consensus 273 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~ 352 (400)
T 1s2m_A 273 LLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 352 (400)
T ss_dssp HHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCT
T ss_pred HHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCc
Q 008602 508 GRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGR 545 (560)
Q Consensus 508 g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~ 545 (560)
|+.|.|++++++.|...+..+++.++.+++.++....+
T Consensus 353 g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 353 GHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp TCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred CCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 99999999999999999999999999999988765443
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.2e-54 Score=444.89 Aligned_cols=375 Identities=27% Similarity=0.446 Sum_probs=311.4
Q ss_pred CcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCC
Q 008602 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGN 183 (560)
Q Consensus 106 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~ 183 (560)
..+..+|+++++++.+.+.+.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+..
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~--------- 91 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP--------- 91 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh---------
Confidence 355677999999999999999999999999999999999997 999999999999999999999988732
Q ss_pred CCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc-CC
Q 008602 184 GESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA-GK 262 (560)
Q Consensus 184 ~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~-~~ 262 (560)
...++++||++||++|+.|+++.+.++....+...+....++....... ...++|+|+||++|.+.+.. ..
T Consensus 92 ----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~ 163 (412)
T 3fht_A 92 ----ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKF 163 (412)
T ss_dssp ----TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCS
T ss_pred ----cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCC
Confidence 2345689999999999999999999987665555566677665543221 34568999999999998755 55
Q ss_pred ccCCCeeEEEEechhhhhc-cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCe
Q 008602 263 LHTHGCRFLVLDEIDELLS-FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL 341 (560)
Q Consensus 263 ~~~~~l~llIiDE~h~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~ 341 (560)
+.+.++++||+||||++.+ .++...+..+...++ ...|++++|||+++.+..+...++.++.
T Consensus 164 ~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 226 (412)
T 3fht_A 164 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-----------------RNCQMLLFSATFEDSVWKFAQKVVPDPN 226 (412)
T ss_dssp SCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC-----------------TTCEEEEEESCCCHHHHHHHHHHSSSCE
T ss_pred cChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC-----------------CCceEEEEEeecCHHHHHHHHHhcCCCe
Confidence 6778999999999999887 577777777776653 5679999999999999999999988887
Q ss_pred EEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceE-EEEechhhHHHHHHHHHHhcCCCeEEEEE
Q 008602 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHY-YCVTKLQHKVDTLRRCVHALDAQTVIAFM 420 (560)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~l~~~~~~~~~~~~iif~ 420 (560)
.+...... .....+.+. ........+...+..++....++++||||
T Consensus 227 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~ 273 (412)
T 3fht_A 227 VIKLKREE---------------------------------ETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFC 273 (412)
T ss_dssp EECCCGGG---------------------------------SSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred EEeecccc---------------------------------ccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEe
Confidence 66532210 011122333 33344567788888888888889999999
Q ss_pred cChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC------Ch
Q 008602 421 NNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT------DS 494 (560)
Q Consensus 421 ~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~------s~ 494 (560)
+++..++.++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||.|. +.
T Consensus 274 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~ 353 (412)
T 3fht_A 274 HTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN 353 (412)
T ss_dssp SSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCH
T ss_pred CCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 67
Q ss_pred hhhHhhhccccCCCCcceEEEEecCcc-HHHHHHHHHHhCCCccccccCCCcee
Q 008602 495 IHYAHRAGRTGRLGRRGTVVSICEEPE-VFVVKKMQKQLAVPIQACEFTEGRLV 547 (560)
Q Consensus 495 ~~y~Qr~GR~gR~g~~g~~~~l~~~~e-~~~~~~l~~~l~~~~~~~~~~~~~~~ 547 (560)
.+|+||+||+||.|+.|.|++++++.+ ...+..+++.++..++.....+.+.+
T Consensus 354 ~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 354 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp HHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred heeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 899999999999999999999998764 88999999999999988876654443
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-53 Score=430.66 Aligned_cols=360 Identities=31% Similarity=0.571 Sum_probs=315.3
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
.+|+++++++.+.+.+.+.||..|+|+|.++++.++++ +++++++|||+|||++|+.+++..+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------------- 71 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------------- 71 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--------------
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--------------
Confidence 45999999999999999999999999999999999988 799999999999999999999987622
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
..+.+++|++|+++|+.|+++++.++++..... +..+.|+.........+. .++|+|+||+.|.+.+......+.++
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~~~~~~~~~~ 148 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGNKNLK-IAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINRGTLNLKNV 148 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC-EEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCce-EEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHHcCCcccccC
Confidence 346789999999999999999999988765443 667888888777766665 45799999999999988888888999
Q ss_pred eEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccc
Q 008602 269 RFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348 (560)
Q Consensus 269 ~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 348 (560)
++||+||||++.+.++...+..++..+. +..+++++|||++.........+..++..+....
T Consensus 149 ~~iIiDEah~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~- 210 (367)
T 1hv8_A 149 KYFILDEADEMLNMGFIKDVEKILNACN-----------------KDKRILLFSATMPREILNLAKKYMGDYSFIKAKI- 210 (367)
T ss_dssp CEEEEETHHHHHTTTTHHHHHHHHHTSC-----------------SSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-
T ss_pred CEEEEeCchHhhhhchHHHHHHHHHhCC-----------------CCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-
Confidence 9999999999999899888888877653 5679999999999999888888877765544211
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHH
Q 008602 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~ 428 (560)
...+...+.......+...+.+++. ..++++||||+++..++.
T Consensus 211 ------------------------------------~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~ 253 (367)
T 1hv8_A 211 ------------------------------------NANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKE 253 (367)
T ss_dssp ------------------------------------SSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHH
T ss_pred ------------------------------------CCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHH
Confidence 1123344455556677777777776 457899999999999999
Q ss_pred HHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCC
Q 008602 429 AVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLG 508 (560)
Q Consensus 429 ~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g 508 (560)
++..|++.++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|..+|+||+||+||.|
T Consensus 254 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 333 (367)
T 1hv8_A 254 LASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAG 333 (367)
T ss_dssp HHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSS
T ss_pred HHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEecCccHHHHHHHHHHhCCCcccccc
Q 008602 509 RRGTVVSICEEPEVFVVKKMQKQLAVPIQACEF 541 (560)
Q Consensus 509 ~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~ 541 (560)
++|.|++++++.|...+..+++.++.+++..++
T Consensus 334 ~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 334 KKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp SCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred CccEEEEEEcHHHHHHHHHHHHHhCCCCceecc
Confidence 999999999999999999999999999988765
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.2e-54 Score=461.09 Aligned_cols=377 Identities=27% Similarity=0.407 Sum_probs=307.5
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHhhhh--cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeE
Q 008602 117 LPPLLLERLEREGFNVPTEVQSAAIPSIL--KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194 (560)
Q Consensus 117 l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~--~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 194 (560)
+++.+.+.+..+||..|+|+|.++++.++ .+++++++||||+|||++|++|++..+..... ....++++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~---------~~~~~~~~ 149 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------DSQYMVKA 149 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT---------SSTTSCCE
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc---------cccCCeeE
Confidence 99999999999999999999999999999 67899999999999999999999998743221 11335789
Q ss_pred EEEccCHHHHHHHHHHHHHHhCC---CCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC-CccCCCeeE
Q 008602 195 VIVAPSRELGMQIVREIKKLLGP---SDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG-KLHTHGCRF 270 (560)
Q Consensus 195 lil~Pt~~La~Q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~-~~~~~~l~l 270 (560)
||++||++||.|+++++++++.. .....+..++|+.....+...+..+.++|+|+||++|.+++... ...++++++
T Consensus 150 lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 229 (563)
T 3i5x_A 150 VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 229 (563)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceE
Confidence 99999999999999999987532 22344677899999988888887778899999999999877654 346788999
Q ss_pred EEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccc
Q 008602 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350 (560)
Q Consensus 271 lIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (560)
|||||||+|.+++|...+..++..+....... .+.+|+++||||+++.+..++..++.++..+.......
T Consensus 230 lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~----------~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~ 299 (563)
T 3i5x_A 230 KVLDEADRLLEIGFRDDLETISGILNEKNSKS----------ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK 299 (563)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC----------TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS
T ss_pred EEEeCHHHHhccchHHHHHHHHHhhhhccccC----------ccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCC
Confidence 99999999999999999999988875432211 14679999999999999999988888776654322110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEe-chhhH----HHHHHHHHHh-cCCCeEEEEEcChh
Q 008602 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVT-KLQHK----VDTLRRCVHA-LDAQTVIAFMNNTR 424 (560)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k----~~~l~~~~~~-~~~~~~iif~~~~~ 424 (560)
.. ......+...+... ....+ ...+...+.. ..++++||||+++.
T Consensus 300 ~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~ 350 (563)
T 3i5x_A 300 NE-----------------------------PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK 350 (563)
T ss_dssp SS-----------------------------CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHH
T ss_pred CC-----------------------------ccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHH
Confidence 00 00011122222222 22222 2233333333 45789999999999
Q ss_pred hHHHHHHHHHHC---CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhh
Q 008602 425 QLKDAVFKLEAR---GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501 (560)
Q Consensus 425 ~~~~~~~~L~~~---~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~ 501 (560)
.++.++..|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.++..|+||+
T Consensus 351 ~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 430 (563)
T 3i5x_A 351 FTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 430 (563)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHH
T ss_pred HHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhc
Confidence 999999999986 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEEecCccHHHHHHHHHHhCCCcccccc
Q 008602 502 GRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEF 541 (560)
Q Consensus 502 GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~ 541 (560)
||+||.|+.|.|++++.+.|...++.+++..+.+++....
T Consensus 431 GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~ 470 (563)
T 3i5x_A 431 GRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEK 470 (563)
T ss_dssp TTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEE
T ss_pred CccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccccc
Confidence 9999999999999999999999999999999988876654
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.6e-54 Score=461.88 Aligned_cols=378 Identities=27% Similarity=0.403 Sum_probs=308.6
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHhhhh--cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeE
Q 008602 117 LPPLLLERLEREGFNVPTEVQSAAIPSIL--KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194 (560)
Q Consensus 117 l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~--~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 194 (560)
+++.+++.+..+||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+..... ....++++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~---------~~~~~~~~ 98 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------DSQYMVKA 98 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT---------SSTTSCCE
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc---------cccCCCeE
Confidence 99999999999999999999999999999 77899999999999999999999988743211 11346789
Q ss_pred EEEccCHHHHHHHHHHHHHHhC---CCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC-CccCCCeeE
Q 008602 195 VIVAPSRELGMQIVREIKKLLG---PSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG-KLHTHGCRF 270 (560)
Q Consensus 195 lil~Pt~~La~Q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~-~~~~~~l~l 270 (560)
||++||++|+.|+++++.+++. ......+..++|+.....+...+..+.++|+|+||++|.+.+... ...++++++
T Consensus 99 lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~ 178 (579)
T 3sqw_A 99 VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 178 (579)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred EEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCE
Confidence 9999999999999999998753 222344677899999999888888777899999999999877654 446788999
Q ss_pred EEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccc
Q 008602 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIP 350 (560)
Q Consensus 271 lIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (560)
|||||||+|.+++|...+..++..+....... .+.+|+++||||+++.+..+...++.++..+.......
T Consensus 179 lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~----------~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~ 248 (579)
T 3sqw_A 179 KVLDEADRLLEIGFRDDLETISGILNEKNSKS----------ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK 248 (579)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC----------TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS
T ss_pred EEEEChHHhhcCCCHHHHHHHHHHhhhhhccc----------ccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCc
Confidence 99999999999999999999988875432211 14679999999999999999988888876654322110
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEec-hhh----HHHHHHHHHHh-cCCCeEEEEEcChh
Q 008602 351 LESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK-LQH----KVDTLRRCVHA-LDAQTVIAFMNNTR 424 (560)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----k~~~l~~~~~~-~~~~~~iif~~~~~ 424 (560)
.. ......+...+.... ... ....+...+.. ..+.++||||+++.
T Consensus 249 ~~-----------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~ 299 (579)
T 3sqw_A 249 NE-----------------------------PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK 299 (579)
T ss_dssp SS-----------------------------CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHH
T ss_pred cc-----------------------------cccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHH
Confidence 00 000111222222222 122 22333333333 45789999999999
Q ss_pred hHHHHHHHHHHC---CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhh
Q 008602 425 QLKDAVFKLEAR---GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501 (560)
Q Consensus 425 ~~~~~~~~L~~~---~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~ 501 (560)
.++.++..|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+|++|.++..|+||+
T Consensus 300 ~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~ 379 (579)
T 3sqw_A 300 FTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379 (579)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhc
Confidence 999999999987 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccC
Q 008602 502 GRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFT 542 (560)
Q Consensus 502 GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~ 542 (560)
||+||.|+.|.|++++.+.|...++.+++..+.++...+..
T Consensus 380 GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 420 (579)
T 3sqw_A 380 GRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 420 (579)
T ss_dssp TTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEEEE
T ss_pred cccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcccccCC
Confidence 99999999999999999999999999999988888766543
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.9e-53 Score=433.03 Aligned_cols=364 Identities=29% Similarity=0.468 Sum_probs=303.4
Q ss_pred cCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 109 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
..+|+++++++.+.+.+.+.||..|+|+|.++++.++++ +++++++|||+|||++|+++++..+..
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------------ 71 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------------ 71 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------------
Confidence 467999999999999999999999999999999999998 999999999999999999999988732
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
...+.++||++||++|+.|+++++.++....... +....++..... ....++|+|+||++|.+.+......+.
T Consensus 72 -~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~iiv~T~~~l~~~~~~~~~~~~ 144 (395)
T 3pey_A 72 -EDASPQAICLAPSRELARQTLEVVQEMGKFTKIT-SQLIVPDSFEKN-----KQINAQVIVGTPGTVLDLMRRKLMQLQ 144 (395)
T ss_dssp -TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC-EEEESTTSSCTT-----SCBCCSEEEECHHHHHHHHHTTCBCCT
T ss_pred -CCCCccEEEECCCHHHHHHHHHHHHHHhcccCee-EEEEecCchhhh-----ccCCCCEEEEcHHHHHHHHHcCCcccc
Confidence 2346789999999999999999999986554433 455555433221 123568999999999999988888899
Q ss_pred CeeEEEEechhhhhc-cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEee
Q 008602 267 GCRFLVLDEIDELLS-FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345 (560)
Q Consensus 267 ~l~llIiDE~h~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 345 (560)
++++||+||||++.+ .++...+..+...++ +..|++++|||+++.+..+...+..++..+..
T Consensus 145 ~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 207 (395)
T 3pey_A 145 KIKIFVLDEADNMLDQQGLGDQCIRVKRFLP-----------------KDTQLVLFSATFADAVRQYAKKIVPNANTLEL 207 (395)
T ss_dssp TCCEEEEETHHHHHHSTTHHHHHHHHHHTSC-----------------TTCEEEEEESCCCHHHHHHHHHHSCSCEEECC
T ss_pred cCCEEEEEChhhhcCccccHHHHHHHHHhCC-----------------CCcEEEEEEecCCHHHHHHHHHhCCCCeEEEc
Confidence 999999999999887 577777777776653 56799999999999999999888877765542
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEE-EEechhhHHHHHHHHHHhcCCCeEEEEEcChh
Q 008602 346 KNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424 (560)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~ 424 (560)
.... .........+ .......+...+..++....++++||||+++.
T Consensus 208 ~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~ 254 (395)
T 3pey_A 208 QTNE---------------------------------VNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKK 254 (395)
T ss_dssp CGGG---------------------------------CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHH
T ss_pred cccc---------------------------------cccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHH
Confidence 2110 0011222333 33355667777888887777899999999999
Q ss_pred hHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC------ChhhhH
Q 008602 425 QLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT------DSIHYA 498 (560)
Q Consensus 425 ~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~------s~~~y~ 498 (560)
.++.++..|++.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+ |...|+
T Consensus 255 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~ 334 (395)
T 3pey_A 255 TANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYI 334 (395)
T ss_dssp HHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hhhccccCCCCcceEEEEecCc-cHHHHHHHHHHhC-CCcccccc
Q 008602 499 HRAGRTGRLGRRGTVVSICEEP-EVFVVKKMQKQLA-VPIQACEF 541 (560)
Q Consensus 499 Qr~GR~gR~g~~g~~~~l~~~~-e~~~~~~l~~~l~-~~~~~~~~ 541 (560)
||+||+||.|+.|.|++++++. +...+..+.+.++ ..+..++.
T Consensus 335 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 335 HRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp HHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred HhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 9999999999999999999865 5667788888877 55555444
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.9e-55 Score=459.57 Aligned_cols=375 Identities=28% Similarity=0.453 Sum_probs=171.1
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~ 184 (560)
.+..+|.++++++.+.+.+..+||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+..
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~---------- 158 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---------- 158 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT----------
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh----------
Confidence 34568999999999999999999999999999999999987 999999999999999999999988732
Q ss_pred CCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc-CCc
Q 008602 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA-GKL 263 (560)
Q Consensus 185 ~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~-~~~ 263 (560)
...++++||++||++|+.|+++.+.++........+....++....... ...++|+|+||++|.+++.. ..+
T Consensus 159 ---~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~ 231 (479)
T 3fmp_B 159 ---ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFI 231 (479)
T ss_dssp ---TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCC
T ss_pred ---cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcCCc
Confidence 2345689999999999999999999987665555566666665443211 33568999999999998855 456
Q ss_pred cCCCeeEEEEechhhhhc-cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeE
Q 008602 264 HTHGCRFLVLDEIDELLS-FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342 (560)
Q Consensus 264 ~~~~l~llIiDE~h~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~ 342 (560)
.+.++++|||||+|++.+ .++...+..+...++ ..+|++++|||++..+..+...++.+|..
T Consensus 232 ~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 294 (479)
T 3fmp_B 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-----------------RNCQMLLFSATFEDSVWKFAQKVVPDPNV 294 (479)
T ss_dssp CGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC-----------------TTSEEEEEESCCCHHHHHHHHHHSSSEEE
T ss_pred CcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC-----------------ccceEEEEeCCCCHHHHHHHHHHcCCCeE
Confidence 779999999999999887 577777777765542 56899999999999999999999988877
Q ss_pred EeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEE-EEechhhHHHHHHHHHHhcCCCeEEEEEc
Q 008602 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMN 421 (560)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~~~~~~~~~~iif~~ 421 (560)
+........ ...+.+.+ .......+...+..++.....++++|||+
T Consensus 295 i~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~ 341 (479)
T 3fmp_B 295 IKLKREEET---------------------------------LDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCH 341 (479)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EeccccccC---------------------------------cCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeC
Confidence 764321100 01111222 22223445566666666666789999999
Q ss_pred ChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC------Chh
Q 008602 422 NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT------DSI 495 (560)
Q Consensus 422 ~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~------s~~ 495 (560)
++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|. +..
T Consensus 342 s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~ 421 (479)
T 3fmp_B 342 TRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE 421 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999994 668
Q ss_pred hhHhhhccccCCCCcceEEEEecCcc-HHHHHHHHHHhCCCccccccCCCceee
Q 008602 496 HYAHRAGRTGRLGRRGTVVSICEEPE-VFVVKKMQKQLAVPIQACEFTEGRLVI 548 (560)
Q Consensus 496 ~y~Qr~GR~gR~g~~g~~~~l~~~~e-~~~~~~l~~~l~~~~~~~~~~~~~~~~ 548 (560)
.|+||+||+||.|+.|.|++|+++.+ ...+..+.+.++..++.+...+.+.++
T Consensus 422 ~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~e 475 (479)
T 3fmp_B 422 TYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE 475 (479)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHHHHH
Confidence 99999999999999999999998664 888899999999888887765554443
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1e-54 Score=444.61 Aligned_cols=372 Identities=29% Similarity=0.497 Sum_probs=178.9
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
.....|+++++++.+.+.+..+||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------------ 85 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------ 85 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------------
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------------
Confidence 34456999999999999999999999999999999999999999999999999999999999988732
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
...++++||++||++|+.|+++++.+++...+.. +..+.|+.........+. .++|+|+||+.|.+.+......+.
T Consensus 86 -~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~~~~~~~ 161 (394)
T 1fuu_A 86 -SVKAPQALMLAPTRELALQIQKVVMALAFHMDIK-VHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTD 161 (394)
T ss_dssp -TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC-EEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHTTSSCCT
T ss_pred -cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCee-EEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHhCCcchh
Confidence 2346789999999999999999999987655443 677888888776666655 357999999999998888888889
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
++++||+||||++.+.++...+..++..++ +..+++++|||+++........++.+|..+...
T Consensus 162 ~~~~vIiDEah~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 224 (394)
T 1fuu_A 162 KIKMFILDEADEMLSSGFKEQIYQIFTLLP-----------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 224 (394)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSC-----------------TTCEEEEECSSCCHHHHHHHHHHCCSCEEEEEC
T ss_pred hCcEEEEEChHHhhCCCcHHHHHHHHHhCC-----------------CCceEEEEEEecCHHHHHHHHHhcCCCeEEEec
Confidence 999999999999998899999988887763 567999999999999999888888888766532
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEE-EEechhhHHHHHHHHHHhcCCCeEEEEEcChhh
Q 008602 347 NVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQ 425 (560)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~ 425 (560)
..... ...+...+ .......+...+..++.....++++|||+++..
T Consensus 225 ~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~ 271 (394)
T 1fuu_A 225 KDELT---------------------------------LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRK 271 (394)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred Ccccc---------------------------------CCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHH
Confidence 21000 00111111 111222345556666666667899999999999
Q ss_pred HHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhcccc
Q 008602 426 LKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTG 505 (560)
Q Consensus 426 ~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~g 505 (560)
++.++..|++.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+|
T Consensus 272 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~ 351 (394)
T 1fuu_A 272 VEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGG 351 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCC
Q 008602 506 RLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEG 544 (560)
Q Consensus 506 R~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~ 544 (560)
|.|++|.|++++++.|...+..+.+.++.+++..+....
T Consensus 352 R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 352 RFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ---------------------------------------
T ss_pred CCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 999999999999999999999999999998887766443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.4e-50 Score=402.09 Aligned_cols=336 Identities=29% Similarity=0.487 Sum_probs=279.0
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEE
Q 008602 117 LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVI 196 (560)
Q Consensus 117 l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vli 196 (560)
+++.+.+.+.++||..|+|+|.++++.+++++++++++|||+|||++|+.+++.. +.+++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-------------------~~~~li 61 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------------------GMKSLV 61 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------------------TCCEEE
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------------------cCCEEE
Confidence 5788999999999999999999999999999999999999999999999998764 245999
Q ss_pred EccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEech
Q 008602 197 VAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276 (560)
Q Consensus 197 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~ 276 (560)
++|+++|+.|+++++.++...... .+..+.|+.........+.. ++|+|+||++|.+.+......+.++++||+|||
T Consensus 62 v~P~~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEa 138 (337)
T 2z0m_A 62 VTPTRELTRQVASHIRDIGRYMDT-KVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEA 138 (337)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCC-CEEEECTTSCHHHHHHHHTT--CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESH
T ss_pred EeCCHHHHHHHHHHHHHHhhhcCC-cEEEEECCcchHHHHhhcCC--CCEEEECHHHHHHHHHcCCcchhhCcEEEEECh
Confidence 999999999999999988655444 36678888887777666654 679999999999988888888899999999999
Q ss_pred hhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCC
Q 008602 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPA 356 (560)
Q Consensus 277 h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (560)
|++.+.++...+..++...+ ...+++++|||+++........+..++..+.....
T Consensus 139 h~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-------- 193 (337)
T 2z0m_A 139 DLMFEMGFIDDIKIILAQTS-----------------NRKITGLFSATIPEEIRKVVKDFITNYEEIEACIG-------- 193 (337)
T ss_dssp HHHHHTTCHHHHHHHHHHCT-----------------TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGG--------
T ss_pred HHhhccccHHHHHHHHhhCC-----------------cccEEEEEeCcCCHHHHHHHHHhcCCceeeecccc--------
Confidence 99999999999888887663 56789999999999998888888777655432100
Q ss_pred CCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHC
Q 008602 357 TGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEAR 436 (560)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~ 436 (560)
.......+.......+ .....+....++++||||++++.++.++..|.
T Consensus 194 ----------------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-- 241 (337)
T 2z0m_A 194 ----------------------------LANVEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD-- 241 (337)
T ss_dssp ----------------------------GGGEEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--
T ss_pred ----------------------------cCCceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--
Confidence 0011122222221111 22245555678899999999999999988876
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEE
Q 008602 437 GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSI 516 (560)
Q Consensus 437 ~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l 516 (560)
.+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.|+.|.|+++
T Consensus 242 --~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~ 319 (337)
T 2z0m_A 242 --NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITF 319 (337)
T ss_dssp --TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEE
T ss_pred --hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEE
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccHHHHHHHHHHhCC
Q 008602 517 CEEPEVFVVKKMQKQLAV 534 (560)
Q Consensus 517 ~~~~e~~~~~~l~~~l~~ 534 (560)
+. .|...++.+++.++.
T Consensus 320 ~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 320 IL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp ES-SCHHHHHHHC-----
T ss_pred Ee-CcHHHHHHHHHHhcc
Confidence 99 888888888877653
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-51 Score=429.99 Aligned_cols=372 Identities=26% Similarity=0.378 Sum_probs=255.6
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~ 184 (560)
.....|...++++.+.+.+...||..|+++|.++++.++++ +++++++|||||||++|+++++..+..
T Consensus 116 ~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~---------- 185 (508)
T 3fho_A 116 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA---------- 185 (508)
T ss_dssp -----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT----------
T ss_pred cccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh----------
Confidence 33445667788999999999999999999999999999998 999999999999999999999998732
Q ss_pred CCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCcc
Q 008602 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLH 264 (560)
Q Consensus 185 ~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~ 264 (560)
...++++||++|+++|+.|+++++++++...... +....++..... ....++|+|+||+.|.+.+......
T Consensus 186 ---~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~l~~~~~~ 256 (508)
T 3fho_A 186 ---SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK-TAFGIKDSVPKG-----AKIDAQIVIGTPGTVMDLMKRRQLD 256 (508)
T ss_dssp ---TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC-EEC---------------CCCCSEEEECHHHHHHHHHTTCSC
T ss_pred ---CCCCceEEEEECcHHHHHHHHHHHHHhCCccCee-EEEEeCCccccc-----ccCCCCEEEECHHHHHHHHHcCCcc
Confidence 2345689999999999999999999987655433 333333322211 1235689999999999999888888
Q ss_pred CCCeeEEEEechhhhhc-cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEE
Q 008602 265 THGCRFLVLDEIDELLS-FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343 (560)
Q Consensus 265 ~~~l~llIiDE~h~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 343 (560)
+.++++|||||||++.+ .++...+..+...+. ...|++++|||+++.+..+...+..++..+
T Consensus 257 ~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~-----------------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i 319 (508)
T 3fho_A 257 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP-----------------RNTQIVLFSATFSERVEKYAERFAPNANEI 319 (508)
T ss_dssp CTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC-----------------TTCEEEEEESCCSTHHHHHHHHHSTTCEEE
T ss_pred ccCCCEEEEechhhhcccCCcHHHHHHHHHhCC-----------------cCCeEEEEeCCCCHHHHHHHHHhcCCCeEE
Confidence 99999999999999877 577888888877763 567999999999999999999888877665
Q ss_pred eeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCccc-ceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcC
Q 008602 344 QAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPAL-KHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNN 422 (560)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~ 422 (560)
....... ....+ ..+........+...+..++....++++||||++
T Consensus 320 ~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s 366 (508)
T 3fho_A 320 RLKTEEL---------------------------------SVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKK 366 (508)
T ss_dssp CCCCCC-------------------------------------CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSS
T ss_pred EeccccC---------------------------------CcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 4211000 00111 2222333455677777788877778999999999
Q ss_pred hhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCC------CChhh
Q 008602 423 TRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP------TDSIH 496 (560)
Q Consensus 423 ~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p------~s~~~ 496 (560)
+..++.++..|.+.+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++|.| .|+..
T Consensus 367 ~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~ 446 (508)
T 3fho_A 367 KDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQT 446 (508)
T ss_dssp TTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 78999
Q ss_pred hHhhhccccCCCCcceEEEEec-CccHHHHHHHHHHhCCCccccccCCCcee
Q 008602 497 YAHRAGRTGRLGRRGTVVSICE-EPEVFVVKKMQKQLAVPIQACEFTEGRLV 547 (560)
Q Consensus 497 y~Qr~GR~gR~g~~g~~~~l~~-~~e~~~~~~l~~~l~~~~~~~~~~~~~~~ 547 (560)
|+||+||+||.|+.|.|++++. +.+...+..+++.++.+++.....+.+.+
T Consensus 447 ~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~ 498 (508)
T 3fho_A 447 YLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEEL 498 (508)
T ss_dssp HHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----------
T ss_pred HHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHHH
Confidence 9999999999999999999997 45677889999999999988876654443
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.3e-49 Score=414.50 Aligned_cols=344 Identities=20% Similarity=0.259 Sum_probs=273.8
Q ss_pred CCcccCCCCHHHHHHHHh-CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLER-EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
.+|+++++++.+.+.+.+ +||..|+|+|.++|+.+++++|+++++|||+|||++|++|++..-
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~---------------- 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN---------------- 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSS----------------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhC----------------
Confidence 358999999999999998 899999999999999999999999999999999999999997531
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHH---HHHHHcCCCcEEEeCchHHHHHHHcCCccC
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQ---EEALRKNKPAIVVGTPGRIAEISAAGKLHT 265 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~ 265 (560)
..+||++|+++|+.|+++.+... ...+..+.++...... ...+..+.++|+|+||++|........+..
T Consensus 66 ---g~~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~ 137 (523)
T 1oyw_A 66 ---GLTVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAH 137 (523)
T ss_dssp ---SEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTT
T ss_pred ---CCEEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhh
Confidence 35899999999999999999874 2235556665554332 355667888999999999964211122344
Q ss_pred CCeeEEEEechhhhhccc--hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc--CCCCe
Q 008602 266 HGCRFLVLDEIDELLSFN--FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW--GHDPL 341 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~~--~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~~~ 341 (560)
.++++|||||||++.+++ |...+..+..... ..+..+++++|||+++.+......+ +.++.
T Consensus 138 ~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~---------------~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~ 202 (523)
T 1oyw_A 138 WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ---------------RFPTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (523)
T ss_dssp SCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHH---------------HCTTSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred CCCCEEEEeCccccCcCCCccHHHHHHHHHHHH---------------hCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCe
Confidence 789999999999988775 5555544321111 1256789999999998876544332 34444
Q ss_pred EEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEc
Q 008602 342 LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMN 421 (560)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~ 421 (560)
....... ... ..+.......+...+.+.+....++++||||+
T Consensus 203 ~~~~~~~-------------------------------------r~~-l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~ 244 (523)
T 1oyw_A 203 IQISSFD-------------------------------------RPN-IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCN 244 (523)
T ss_dssp EEECCCC-------------------------------------CTT-EEEEEEECSSHHHHHHHHHHHTTTCCEEEECS
T ss_pred EEeCCCC-------------------------------------CCc-eEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeC
Confidence 3321100 001 12222333456677778887777889999999
Q ss_pred ChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhh
Q 008602 422 NTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501 (560)
Q Consensus 422 ~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~ 501 (560)
+++.++.++..|.+.++.+..+||+|++.+|..+++.|.+|+.+|||||+++++|||+|++++||||++|.|...|+||+
T Consensus 245 sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~ 324 (523)
T 1oyw_A 245 SRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQET 324 (523)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEEecCccHHHHHHHHH
Q 008602 502 GRTGRLGRRGTVVSICEEPEVFVVKKMQK 530 (560)
Q Consensus 502 GR~gR~g~~g~~~~l~~~~e~~~~~~l~~ 530 (560)
||+||.|.+|.|++++++.|...++.+.+
T Consensus 325 GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 325 GRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred ccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999888776665554
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.7e-49 Score=415.99 Aligned_cols=340 Identities=17% Similarity=0.239 Sum_probs=268.9
Q ss_pred cccCCCCHHHHHHHHh-CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCC
Q 008602 112 FLELGLPPLLLERLER-EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKT 190 (560)
Q Consensus 112 f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 190 (560)
+.++++++.+.+.|.. +||..|+|+|.++|+.+++++|+++++|||+|||++|++|++..
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------------- 83 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------------- 83 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-------------------
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-------------------
Confidence 3468899999999998 69999999999999999999999999999999999999999753
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHH---H--HcCCCcEEEeCchHHHH------HHH
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEA---L--RKNKPAIVVGTPGRIAE------ISA 259 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~IlI~Tp~~l~~------~l~ 259 (560)
+.++||++|+++|+.|+++.+.++ ...+..+.++......... + ..+.++|+|+||++|.. .+.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 236999999999999999999886 2235566666665544332 2 35678999999998742 222
Q ss_pred cCCccCCCeeEEEEechhhhhccc--hHHHHHH--HHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHH
Q 008602 260 AGKLHTHGCRFLVLDEIDELLSFN--FREAMHR--IVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARS 335 (560)
Q Consensus 260 ~~~~~~~~l~llIiDE~h~l~~~~--~~~~l~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~ 335 (560)
. ...+.++++|||||||++.+++ |...+.. ++... .+..+++++|||+++.+......
T Consensus 159 ~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~-----------------~~~~~ii~lSAT~~~~v~~~i~~ 220 (591)
T 2v1x_A 159 K-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ-----------------FPNASLIGLTATATNHVLTDAQK 220 (591)
T ss_dssp H-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH-----------------CTTSEEEEEESSCCHHHHHHHHH
T ss_pred h-hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh-----------------CCCCcEEEEecCCCHHHHHHHHH
Confidence 2 3456789999999999988876 5555543 22211 25689999999999998887777
Q ss_pred cCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEec---hhhHHHHHHHHHHh-c
Q 008602 336 WGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK---LQHKVDTLRRCVHA-L 411 (560)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~~l~~~~~~-~ 411 (560)
++..+........ .......+..... ...+...+.+.+.. .
T Consensus 221 ~l~~~~~~~~~~~-----------------------------------~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~ 265 (591)
T 2v1x_A 221 ILCIEKCFTFTAS-----------------------------------FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRY 265 (591)
T ss_dssp HTTCCSCEEEECC-----------------------------------CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTT
T ss_pred HhCCCCcEEEecC-----------------------------------CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhc
Confidence 6654322211100 0001111222222 23345566666653 3
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP 491 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p 491 (560)
.++++||||++++.++.++..|.+.++.+..+||+|++.+|..+++.|.+|+.+|||||+++++|||+|++++||+|++|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p 345 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMS 345 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhccccCCCCcceEEEEecCccHHHHHHH
Q 008602 492 TDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528 (560)
Q Consensus 492 ~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l 528 (560)
.|+..|+||+||+||.|.+|.|++++++.|...+..+
T Consensus 346 ~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 346 KSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999998887665544
No 18
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.7e-49 Score=443.98 Aligned_cols=387 Identities=16% Similarity=0.198 Sum_probs=293.9
Q ss_pred ccccccccccCCCceecceeeeecccCCCCceeEeecCccccccccccccCCCCCCCCCCCCcccccccccccccccccc
Q 008602 17 LPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASLGYKSEFEPTNKNKSNKPKKHSPIEIPKAKVKAVRSDGIKAAGV 96 (560)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (560)
+|++.+..+++ |++.++..+.++++|. ..|.+.+.+. +..+..++.+.++.++.
T Consensus 524 vp~~~l~~~~~------------y~g~~~~~~~l~~l~~------~~w~~~k~~~--------~~~~~~~a~~l~~~~a~ 577 (1151)
T 2eyq_A 524 VPVSSLHLISR------------YAGGAEENAPLHKLGG------DAWSRARQKA--------AEKVRDVAAELLDIYAQ 577 (1151)
T ss_dssp EEGGGGGGEEE------------CCCSCSSSCCCCCTTC------SHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred eeHHHhhhHhc------------ccCCCCCCCchhhcCc------hhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 47888888888 8888888888999988 6776654444 33344444444444443
Q ss_pred ccccccccCCcccCCcccCCCCHHHHHH-HHhCCCCCChHHHHHHHhhhhc----CC--cEEEEcCCCchHHHHHHHHHH
Q 008602 97 KKSLEIESAPFAANSFLELGLPPLLLER-LEREGFNVPTEVQSAAIPSILK----NH--DVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 97 ~~~~~~~~~~~~~~~f~~~~l~~~l~~~-l~~~~~~~~~~~Q~~ai~~i~~----~~--~~li~~~TGsGKT~~~~~~i~ 169 (560)
+....+. .++.++.+.+. ...++| ++||+|.++++.+++ ++ +++++|+||+|||++|+.+++
T Consensus 578 r~~~~g~----------~~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~ 646 (1151)
T 2eyq_A 578 RAAKEGF----------AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 646 (1151)
T ss_dssp HHTSCCC----------CCCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred HhhCCCC----------CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence 3332221 23344555444 467799 689999999999887 54 999999999999999999998
Q ss_pred hhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCCh---hHHHHHHHcCCCcE
Q 008602 170 SKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANR---SRQEEALRKNKPAI 246 (560)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~I 246 (560)
..+ ..+.+++|++||++||.||++++.+++...+.. +..+.+.... ......+..+.++|
T Consensus 647 ~~~----------------~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~-v~~l~~~~~~~~~~~~~~~l~~g~~dI 709 (1151)
T 2eyq_A 647 LAV----------------DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR-IEMISRFRSAKEQTQILAEVAEGKIDI 709 (1151)
T ss_dssp HHH----------------TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCC-EEEESTTSCHHHHHHHHHHHHTTCCSE
T ss_pred HHH----------------HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCe-EEEEeCCCCHHHHHHHHHHHhcCCCCE
Confidence 877 456799999999999999999999998766544 5555554333 34456677888999
Q ss_pred EEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC
Q 008602 247 VVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP 326 (560)
Q Consensus 247 lI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~ 326 (560)
+|+||+.|.. .+.++++++|||||+|+ ++......++. + +...++++||||++
T Consensus 710 vV~T~~ll~~-----~~~~~~l~lvIiDEaH~-~g~~~~~~l~~----l-----------------~~~~~vl~lSATp~ 762 (1151)
T 2eyq_A 710 LIGTHKLLQS-----DVKFKDLGLLIVDEEHR-FGVRHKERIKA----M-----------------RANVDILTLTATPI 762 (1151)
T ss_dssp EEECTHHHHS-----CCCCSSEEEEEEESGGG-SCHHHHHHHHH----H-----------------HTTSEEEEEESSCC
T ss_pred EEECHHHHhC-----CccccccceEEEechHh-cChHHHHHHHH----h-----------------cCCCCEEEEcCCCC
Confidence 9999987743 57789999999999999 44444443333 3 25679999999999
Q ss_pred hHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHH
Q 008602 327 FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRR 406 (560)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 406 (560)
++...+......++..+...+... ..+..++...........+..
T Consensus 763 p~~l~~~~~~~~~~~~i~~~~~~r-----------------------------------~~i~~~~~~~~~~~i~~~il~ 807 (1151)
T 2eyq_A 763 PRTLNMAMSGMRDLSIIATPPARR-----------------------------------LAVKTFVREYDSMVVREAILR 807 (1151)
T ss_dssp CHHHHHHHTTTSEEEECCCCCCBC-----------------------------------BCEEEEEEECCHHHHHHHHHH
T ss_pred hhhHHHHHhcCCCceEEecCCCCc-----------------------------------cccEEEEecCCHHHHHHHHHH
Confidence 999888887776655443221100 012223332222222333333
Q ss_pred HHHhcCCCeEEEEEcChhhHHHHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCE
Q 008602 407 CVHALDAQTVIAFMNNTRQLKDAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDL 484 (560)
Q Consensus 407 ~~~~~~~~~~iif~~~~~~~~~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~ 484 (560)
.+ ..+++++|||+++.+++.++..|++. +.++..+||+|++.+|+.++++|++|+++|||||+++++|+|+|++++
T Consensus 808 ~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 808 EI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp HH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred HH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 22 35799999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred EEEccC-CCChhhhHhhhccccCCCCcceEEEEecCcc
Q 008602 485 VVNLDL-PTDSIHYAHRAGRTGRLGRRGTVVSICEEPE 521 (560)
Q Consensus 485 VI~~~~-p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e 521 (560)
||+++. +.+..+|.||+||+||.|++|+||+++++.+
T Consensus 886 VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 886 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp EEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred EEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999998 5799999999999999999999999997653
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.4e-48 Score=401.44 Aligned_cols=350 Identities=16% Similarity=0.209 Sum_probs=265.8
Q ss_pred HHHHHHh-CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc
Q 008602 121 LLERLER-EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199 (560)
Q Consensus 121 l~~~l~~-~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 199 (560)
+.+.+.+ ++| +|+|+|.++++.+++++++++++|||+|||++|+.+++... ..++++||++|
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~----------------~~~~~~lil~P 72 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------------RKGKKSALVFP 72 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH----------------TTTCCEEEEES
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh----------------cCCCEEEEEEC
Confidence 3444544 477 89999999999999999999999999999999999988876 45678999999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCceEEEEecCCCh---hHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEech
Q 008602 200 SRELGMQIVREIKKLLGPSDKKAVQQLVGGANR---SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276 (560)
Q Consensus 200 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~ 276 (560)
|++|+.|++++++++.. ....+..+.|+... ..+...+..+.++|+|+||++|.+.+.. +.+.++++||||||
T Consensus 73 t~~L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEa 148 (414)
T 3oiy_A 73 TVTLVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDV 148 (414)
T ss_dssp SHHHHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCH
T ss_pred CHHHHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeCh
Confidence 99999999999999765 34457788888887 6677778888789999999999886653 56678999999999
Q ss_pred hhhhc-----------cchHHH-HHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeC-ChHHH-HHHHHcCCCCeE
Q 008602 277 DELLS-----------FNFREA-MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATV-PFSVI-RAARSWGHDPLL 342 (560)
Q Consensus 277 h~l~~-----------~~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~-~~~~~-~~~~~~~~~~~~ 342 (560)
|++.+ .+|... +..++..++..... ......+..|++++|||+ +..+. .+...+..
T Consensus 149 H~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~------~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~---- 218 (414)
T 3oiy_A 149 DAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIY------ERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN---- 218 (414)
T ss_dssp HHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCC------CCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----
T ss_pred HhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhh------hhcccCCCceEEEEecCCCcchhHHHHHHHhhc----
Confidence 87553 566666 67777766410000 000011567999999994 43322 12222111
Q ss_pred EeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcC
Q 008602 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNN 422 (560)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~ 422 (560)
+. .. ........+.+.+... .+...+..++.. .++++||||++
T Consensus 219 ~~------~~---------------------------~~~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~ 261 (414)
T 3oiy_A 219 FT------VG---------------------------RLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQT 261 (414)
T ss_dssp CC------SS---------------------------CCCCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEESS
T ss_pred cC------cC---------------------------ccccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEECC
Confidence 00 00 0000111223333322 345556666666 35899999999
Q ss_pred hhhHHHHHHHHHHCCCcee-eccCCCCHHHHHHHHHHhhcCCceEEEE----ecCcccCCCCCC-CCEEEEccCC--CCh
Q 008602 423 TRQLKDAVFKLEARGMKAA-ELHGDLGKLARSTTLKKFKNGEVRVLVT----NELSARGLDVAE-CDLVVNLDLP--TDS 494 (560)
Q Consensus 423 ~~~~~~~~~~L~~~~~~~~-~lhg~~~~~~r~~v~~~F~~g~~~iLva----T~~~~~Gidip~-v~~VI~~~~p--~s~ 494 (560)
+..++.++..|.+.++.+. .+||+ +|. ++.|++|+++|||| |+++++|+|+|+ +++||+||+| .+.
T Consensus 262 ~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~ 335 (414)
T 3oiy_A 262 EEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDV 335 (414)
T ss_dssp HHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCH
T ss_pred HHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCH
Confidence 9999999999999999998 99995 344 99999999999999 999999999999 9999999999 999
Q ss_pred hhhHhhhccccCCC----CcceEEEEecCccHHHHHHHHHHhC--CCccccccCCCce
Q 008602 495 IHYAHRAGRTGRLG----RRGTVVSICEEPEVFVVKKMQKQLA--VPIQACEFTEGRL 546 (560)
Q Consensus 495 ~~y~Qr~GR~gR~g----~~g~~~~l~~~~e~~~~~~l~~~l~--~~~~~~~~~~~~~ 546 (560)
..|+||+||+||.| ++|.|++++ .|...+..+++.++ .+++..++.+.++
T Consensus 336 ~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 391 (414)
T 3oiy_A 336 YTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANW 391 (414)
T ss_dssp HHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEGGGCCH
T ss_pred HHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccccccccccH
Confidence 99999999999987 589999999 67778888888888 6666666654443
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-47 Score=429.33 Aligned_cols=375 Identities=18% Similarity=0.189 Sum_probs=266.4
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
..|...++++.+...+...++.+|+|+|.++++.+.++++++++||||||||++|.+|++..+ .
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l----------------~ 225 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL----------------K 225 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH----------------H
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH----------------h
Confidence 356666666665555554444589999999999999999999999999999999999999988 4
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.+.+++|++||++|+.|+++.+.++++ .++.+.|+... +..++|+|+||++|.+++..+...+.+++
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~--------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~ 292 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYRGSEVMREVA 292 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC--------CCSCSEEEEEHHHHHHHHHHCSSHHHHEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc--------CCCCCEEEeChHHHHHHHHcCccccccCC
Confidence 567899999999999999999999876 26677777653 24578999999999999988888889999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChH--HHHHHHHcCCCCeEEeecc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS--VIRAARSWGHDPLLVQAKN 347 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~~~~~~~~~~ 347 (560)
+|||||||++.+.++...+..++..++ +..|+++||||++.. ...+.......+..+....
T Consensus 293 lVVIDEaH~l~d~~rg~~~e~ii~~l~-----------------~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~ 355 (1108)
T 3l9o_A 293 WVIFDEVHYMRDKERGVVWEETIILLP-----------------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN 355 (1108)
T ss_dssp EEEEETGGGTTSHHHHHHHHHHHHHSC-----------------TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEEC
T ss_pred EEEEhhhhhccccchHHHHHHHHHhcC-----------------CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC
Confidence 999999999999999999999988774 678999999998754 3355555555555554433
Q ss_pred ccccC--CCCCCCCCCCCCCCCCCCCC-cchhhhcccccCC-------------cccceEEE----EechhhHHHHHHHH
Q 008602 348 VIPLE--SMPATGPGNLSGPMSGSSSN-SNLQAKQADQSLP-------------PALKHYYC----VTKLQHKVDTLRRC 407 (560)
Q Consensus 348 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~~~~~----~~~~~~k~~~l~~~ 407 (560)
..+.. .+.................. ...........+. ......+. .......+..+...
T Consensus 356 ~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 435 (1108)
T 3l9o_A 356 FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKM 435 (1108)
T ss_dssp CCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHH
T ss_pred CCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHH
Confidence 32221 10000000000000000000 0000000000000 00000000 00012334444455
Q ss_pred HHhcCCCeEEEEEcChhhHHHHHHHHHHCCCc---------------------------------------eeeccCCCC
Q 008602 408 VHALDAQTVIAFMNNTRQLKDAVFKLEARGMK---------------------------------------AAELHGDLG 448 (560)
Q Consensus 408 ~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~---------------------------------------~~~lhg~~~ 448 (560)
+.....+++||||+++..++.++..|...++. +..+||+|+
T Consensus 436 l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~ 515 (1108)
T 3l9o_A 436 IWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLL 515 (1108)
T ss_dssp HHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSC
T ss_pred HHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCC
Confidence 55556789999999999999999887543221 788999999
Q ss_pred HHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCC--------CChhhhHhhhccccCCC--CcceEEEEec
Q 008602 449 KLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLP--------TDSIHYAHRAGRTGRLG--RRGTVVSICE 518 (560)
Q Consensus 449 ~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p--------~s~~~y~Qr~GR~gR~g--~~g~~~~l~~ 518 (560)
+.+|..+++.|++|.++|||||+++++|||+|++++||+++.| .|+.+|+||+|||||.| ..|.||++++
T Consensus 516 ~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~ 595 (1108)
T 3l9o_A 516 PILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 595 (1108)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Confidence 9999999999999999999999999999999999999977664 36677999999999999 6899999997
Q ss_pred Cc-cHHHHHHHHH
Q 008602 519 EP-EVFVVKKMQK 530 (560)
Q Consensus 519 ~~-e~~~~~~l~~ 530 (560)
+. +...+..+..
T Consensus 596 ~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 596 EKMEPQVAKGMVK 608 (1108)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCcCHHHHHHHhc
Confidence 76 4445555543
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-45 Score=403.18 Aligned_cols=353 Identities=19% Similarity=0.234 Sum_probs=263.0
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
..|+++++++.+.+.+..+||..|+|+|.++++. +.++++++++||||||||++|.++++..+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~--------------- 72 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL--------------- 72 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHH---------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHH---------------
Confidence 4699999999999999999999999999999999 788999999999999999999999998762
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
..+.+++|++|+++||.|++++++. +...+ ..++...|+....... + +.++|+|+||++|..++......++++
T Consensus 73 ~~~~~il~i~P~r~La~q~~~~~~~-~~~~g-~~v~~~~G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~ 146 (715)
T 2va8_A 73 KNGGKAIYVTPLRALTNEKYLTFKD-WELIG-FKVAMTSGDYDTDDAW--L--KNYDIIITTYEKLDSLWRHRPEWLNEV 146 (715)
T ss_dssp HSCSEEEEECSCHHHHHHHHHHHGG-GGGGT-CCEEECCSCSSSCCGG--G--GGCSEEEECHHHHHHHHHHCCGGGGGE
T ss_pred HCCCeEEEEeCcHHHHHHHHHHHHH-hhcCC-CEEEEEeCCCCCchhh--c--CCCCEEEEcHHHHHHHHhCChhHhhcc
Confidence 1356899999999999999999953 33332 3366677765543321 1 256899999999999888877778999
Q ss_pred eEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccc
Q 008602 269 RFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348 (560)
Q Consensus 269 ~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 348 (560)
++|||||+|.+.+..+...++.++.++ .+.++++||||+++ ...+..++. .+.+....+.
T Consensus 147 ~~vIiDE~H~l~~~~~~~~l~~i~~~~------------------~~~~ii~lSATl~n-~~~~~~~l~-~~~~~~~~r~ 206 (715)
T 2va8_A 147 NYFVLDELHYLNDPERGPVVESVTIRA------------------KRRNLLALSATISN-YKQIAKWLG-AEPVATNWRP 206 (715)
T ss_dssp EEEEECSGGGGGCTTTHHHHHHHHHHH------------------HTSEEEEEESCCTT-HHHHHHHHT-CEEEECCCCS
T ss_pred CEEEEechhhcCCcccchHHHHHHHhc------------------ccCcEEEEcCCCCC-HHHHHHHhC-CCccCCCCCC
Confidence 999999999988778888888888876 36799999999974 455555543 3222221111
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHH
Q 008602 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKD 428 (560)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~ 428 (560)
.++......... .. ............ ............+.+.+. .++++||||+++++++.
T Consensus 207 ~~l~~~~~~~~~----------~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~ 267 (715)
T 2va8_A 207 VPLIEGVIYPER----------KK-----KEYNVIFKDNTT--KKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAES 267 (715)
T ss_dssp SCEEEEEEEECS----------ST-----TEEEEEETTSCE--EEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHH
T ss_pred CCceEEEEecCC----------cc-----cceeeecCcchh--hhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHH
Confidence 111100000000 00 000000000000 001112334444444443 47999999999999999
Q ss_pred HHHHHHHCC------------------------------------CceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC
Q 008602 429 AVFKLEARG------------------------------------MKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472 (560)
Q Consensus 429 ~~~~L~~~~------------------------------------~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~ 472 (560)
++..|.+.. ..+..+||+|++.+|..+++.|++|+++|||||++
T Consensus 268 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~ 347 (715)
T 2va8_A 268 TALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPT 347 (715)
T ss_dssp HHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGG
T ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChH
Confidence 999998642 24889999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEE----cc-------CCCChhhhHhhhccccCCC--CcceEEEEecCccH
Q 008602 473 SARGLDVAECDLVVN----LD-------LPTDSIHYAHRAGRTGRLG--RRGTVVSICEEPEV 522 (560)
Q Consensus 473 ~~~Gidip~v~~VI~----~~-------~p~s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~e~ 522 (560)
+++|||+|++++||+ || .|.|..+|.||+|||||.| ..|.||+++++.+.
T Consensus 348 l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 348 LAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp GGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999999999998 99 8999999999999999987 47999999987763
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.5e-45 Score=402.06 Aligned_cols=343 Identities=18% Similarity=0.221 Sum_probs=264.0
Q ss_pred CcccCCCCHHHHHHHHhCCCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 111 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
.|+++++++.+.+.+..+||..|+|+|.++++. +.++++++++||||||||++|.++++..+. .
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~---------------~ 66 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRIL---------------T 66 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHH---------------H
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHH---------------h
Confidence 489999999999999999999999999999998 889999999999999999999999998772 1
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.+.+++|++|+++||.|++++++++ ...+ ..+...+|+....... .+.++|+|+||++|..++......+++++
T Consensus 67 ~~~~~l~i~P~raLa~q~~~~~~~l-~~~g-~~v~~~~G~~~~~~~~----~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 140 (720)
T 2zj8_A 67 QGGKAVYIVPLKALAEEKFQEFQDW-EKIG-LRVAMATGDYDSKDEW----LGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_dssp HCSEEEEECSSGGGHHHHHHHTGGG-GGGT-CCEEEECSCSSCCCGG----GGGCSEEEECHHHHHHHHHHTCTTGGGEE
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHHH-HhcC-CEEEEecCCCCccccc----cCCCCEEEECHHHHHHHHHcChhhhhcCC
Confidence 3578999999999999999999643 3222 3366677755443321 13568999999999998888777788999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
+|||||+|++.+..+...+..++.++. .+.+++++|||+++ ...+..++ ..+.+....+..
T Consensus 141 ~vIiDE~H~l~~~~r~~~~~~ll~~l~-----------------~~~~ii~lSATl~n-~~~~~~~l-~~~~~~~~~rp~ 201 (720)
T 2zj8_A 141 ILVADEIHLIGSRDRGATLEVILAHML-----------------GKAQIIGLSATIGN-PEELAEWL-NAELIVSDWRPV 201 (720)
T ss_dssp EEEEETGGGGGCTTTHHHHHHHHHHHB-----------------TTBEEEEEECCCSC-HHHHHHHT-TEEEEECCCCSS
T ss_pred EEEEECCcccCCCcccHHHHHHHHHhh-----------------cCCeEEEEcCCcCC-HHHHHHHh-CCcccCCCCCCC
Confidence 999999999888889999999988874 36799999999975 44555443 322221111111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDA 429 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~ 429 (560)
++...... . . ......... .....+...+.+.+. .++++||||+++++++.+
T Consensus 202 ~l~~~~~~-------------~-----~---~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~ 253 (720)
T 2zj8_A 202 KLRRGVFY-------------Q-----G---FVTWEDGSI-----DRFSSWEELVYDAIR--KKKGALIFVNMRRKAERV 253 (720)
T ss_dssp EEEEEEEE-------------T-----T---EEEETTSCE-----EECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHH
T ss_pred cceEEEEe-------------C-----C---eeeccccch-----hhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHH
Confidence 11000000 0 0 000000000 001233344444443 379999999999999999
Q ss_pred HHHHHHC---------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccC
Q 008602 430 VFKLEAR---------------------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARG 476 (560)
Q Consensus 430 ~~~L~~~---------------------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~G 476 (560)
+..|.+. ...+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 254 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 333 (720)
T 2zj8_A 254 ALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAG 333 (720)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGG
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhcc
Confidence 9988753 1248999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE----cc----CCCChhhhHhhhccccCCC--CcceEEEEecCcc
Q 008602 477 LDVAECDLVVN----LD----LPTDSIHYAHRAGRTGRLG--RRGTVVSICEEPE 521 (560)
Q Consensus 477 idip~v~~VI~----~~----~p~s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~e 521 (560)
+|+|++++||+ || .|.|..+|.||+|||||.| ..|.||+++++.+
T Consensus 334 vdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 334 INTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp CCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 99999999998 77 5899999999999999987 5799999999887
No 23
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-45 Score=403.68 Aligned_cols=341 Identities=21% Similarity=0.251 Sum_probs=262.9
Q ss_pred CcccCC--CCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 111 SFLELG--LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 111 ~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
+|++++ +++.+.+.+..+||..|+|+|.++++.+.++++++++||||||||++|.++++..+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~---------------- 65 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA---------------- 65 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHH----------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHH----------------
Confidence 478888 99999999999999999999999999999999999999999999999999999887
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
..+.+++|++|+++||.|++++++ .+...+ ..++...|+...... ..+.++|+|+||++|..++......++++
T Consensus 66 ~~~~~~l~i~P~r~La~q~~~~~~-~~~~~g-~~v~~~~G~~~~~~~----~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 66 IKGGKSLYVVPLRALAGEKYESFK-KWEKIG-LRIGISTGDYESRDE----HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp HTTCCEEEEESSHHHHHHHHHHHT-TTTTTT-CCEEEECSSCBCCSS----CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred HhCCcEEEEeCcHHHHHHHHHHHH-HHHhcC-CEEEEEeCCCCcchh----hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 235679999999999999999995 344333 346667776544332 12357899999999999888877678899
Q ss_pred eEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccc
Q 008602 269 RFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNV 348 (560)
Q Consensus 269 ~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 348 (560)
++|||||+|.+.+.++...+..++..+.+. +++.++++||||+++ ...+..++ ..+.+....+.
T Consensus 140 ~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~--------------~~~~~ii~lSATl~n-~~~~~~~l-~~~~~~~~~r~ 203 (702)
T 2p6r_A 140 SCLVVDEIHLLDSEKRGATLEILVTKMRRM--------------NKALRVIGLSATAPN-VTEIAEWL-DADYYVSDWRP 203 (702)
T ss_dssp CEEEETTGGGGGCTTTHHHHHHHHHHHHHH--------------CTTCEEEEEECCCTT-HHHHHHHT-TCEEEECCCCS
T ss_pred CEEEEeeeeecCCCCcccHHHHHHHHHHhc--------------CcCceEEEECCCcCC-HHHHHHHh-CCCcccCCCCC
Confidence 999999999988888888888888776421 357899999999974 45555544 33333222221
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEe------chhhHHHHHHHHHHhcCCCeEEEEEcC
Q 008602 349 IPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVT------KLQHKVDTLRRCVHALDAQTVIAFMNN 422 (560)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~k~~~l~~~~~~~~~~~~iif~~~ 422 (560)
.++..... . .. ...... ........+.+.+. .++++||||++
T Consensus 204 ~~l~~~~~---------------------------~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s 251 (702)
T 2p6r_A 204 VPLVEGVL---------------------------C-EG--TLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFEST 251 (702)
T ss_dssp SCEEEEEE---------------------------C-SS--EEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSS
T ss_pred ccceEEEe---------------------------e-CC--eeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCC
Confidence 11110000 0 00 000000 00113444444443 47899999999
Q ss_pred hhhHHHHHHHHHHC------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC
Q 008602 423 TRQLKDAVFKLEAR------------------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL 472 (560)
Q Consensus 423 ~~~~~~~~~~L~~~------------------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~ 472 (560)
+++++.++..|.+. +..+..+||+|++++|..+++.|++|+++|||||++
T Consensus 252 ~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~ 331 (702)
T 2p6r_A 252 RRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPT 331 (702)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECST
T ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcH
Confidence 99999999988753 135888999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEE----cc---CCCChhhhHhhhccccCCC--CcceEEEEecCcc
Q 008602 473 SARGLDVAECDLVVN----LD---LPTDSIHYAHRAGRTGRLG--RRGTVVSICEEPE 521 (560)
Q Consensus 473 ~~~Gidip~v~~VI~----~~---~p~s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~e 521 (560)
+++|+|+|++++||+ || .|.|..+|.||+|||||.| ..|.||+++++.+
T Consensus 332 l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 332 LAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999998 66 7899999999999999988 4799999999887
No 24
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-45 Score=397.60 Aligned_cols=321 Identities=19% Similarity=0.242 Sum_probs=242.1
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHhhhhcC------CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCe
Q 008602 119 PLLLERLEREGFNVPTEVQSAAIPSILKN------HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDI 192 (560)
Q Consensus 119 ~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~------~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 192 (560)
+.+.+.+..++| +||++|.++++.+.++ ++++++|+||||||++|+++++..+ ..|.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l----------------~~g~ 418 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY----------------EAGF 418 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH----------------HHTS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH----------------HcCC
Confidence 445566788999 9999999999999876 6999999999999999999999987 4567
Q ss_pred eEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 193 EAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 193 ~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
+++|++||++||.|+++.+.+++...+.. +..++|+..... ....+.++.++|+|+||+.|.+ .+.+.+++
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~gi~-v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~ 492 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKFNIH-VALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLG 492 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCSSCC-EEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCC
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhcCce-EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCc
Confidence 89999999999999999999998765544 677888776554 4556778889999999998866 67789999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeecccc
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVI 349 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (560)
+|||||+|++ +..... .+. ......++++||||++++...+......+...+...+..
T Consensus 493 lVVIDEaHr~-g~~qr~-------~l~--------------~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~ 550 (780)
T 1gm5_A 493 LVIIDEQHRF-GVKQRE-------ALM--------------NKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 550 (780)
T ss_dssp EEEEESCCCC------C-------CCC--------------SSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS
T ss_pred eEEecccchh-hHHHHH-------HHH--------------HhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC
Confidence 9999999984 221110 000 012457899999999988877665332222222210000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHh--cCCCeEEEEEcChh---
Q 008602 350 PLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAFMNNTR--- 424 (560)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif~~~~~--- 424 (560)
...+..++. ...+...+...+.. ..+++++|||+.+.
T Consensus 551 -----------------------------------r~~i~~~~~---~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se 592 (780)
T 1gm5_A 551 -----------------------------------RKEVQTMLV---PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESD 592 (780)
T ss_dssp -----------------------------------CCCCEECCC---CSSTHHHHHHHHHHHTTTSCCBCCBCCCC----
T ss_pred -----------------------------------CcceEEEEe---ccchHHHHHHHHHHHHhcCCcEEEEecchhhhh
Confidence 000011100 01112223233322 34789999999764
Q ss_pred -----hHHHHHHHHHH---CCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC-Chh
Q 008602 425 -----QLKDAVFKLEA---RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT-DSI 495 (560)
Q Consensus 425 -----~~~~~~~~L~~---~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~-s~~ 495 (560)
.++.++..|.+ .++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||++++|. +.+
T Consensus 593 ~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~ 672 (780)
T 1gm5_A 593 KLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLA 672 (780)
T ss_dssp ----CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTT
T ss_pred hhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHH
Confidence 46777888877 468899999999999999999999999999999999999999999999999999996 789
Q ss_pred hhHhhhccccCCCCcceEEEEecCccH
Q 008602 496 HYAHRAGRTGRLGRRGTVVSICEEPEV 522 (560)
Q Consensus 496 ~y~Qr~GR~gR~g~~g~~~~l~~~~e~ 522 (560)
.|.||+||+||.|.+|+|++++++.+.
T Consensus 673 ~l~Qr~GRaGR~g~~g~~ill~~~~~~ 699 (780)
T 1gm5_A 673 QLHQLRGRVGRGGQEAYCFLVVGDVGE 699 (780)
T ss_dssp HHHHHHHTSCCSSTTCEEECCCCSCCH
T ss_pred HHHHHhcccCcCCCCCEEEEEECCCCh
Confidence 999999999999999999999985433
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.3e-44 Score=406.31 Aligned_cols=338 Identities=16% Similarity=0.213 Sum_probs=258.4
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
..|| +|||+|.++++.+++|+|++++||||||||++|+.+++..+ ..++++||++||++||.|
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~----------------~~~~~~Lil~PtreLa~Q 136 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------------RKGKKSALVFPTVTLVKQ 136 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH----------------TTTCCEEEEESSHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH----------------hcCCeEEEEechHHHHHH
Confidence 4688 79999999999999999999999999999999999988877 456789999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCCh---hHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhh---
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANR---SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL--- 280 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~--- 280 (560)
++++++++. . ....+..++|+.+. ..+...+..+.++|+|+||++|.+++.. +.++++++|||||||++.
T Consensus 137 ~~~~l~~l~-~-~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~ 212 (1104)
T 4ddu_A 137 TLERLQKLA-D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKAS 212 (1104)
T ss_dssp HHHHHHTTS-C-TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSS
T ss_pred HHHHHHHhh-C-CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCcccccc
Confidence 999999954 3 33457888998887 7778888888889999999999886664 667889999999997644
Q ss_pred -------c-cchHHH-HHHHHHHhccC--CCCCCCCchhhhhhccCceEEEEEeeCCh-HHH-HHHHHcCCCCeEEeecc
Q 008602 281 -------S-FNFREA-MHRIVEHVGRR--SGANPREPKSALAMRAERQTIMVSATVPF-SVI-RAARSWGHDPLLVQAKN 347 (560)
Q Consensus 281 -------~-~~~~~~-l~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~SAT~~~-~~~-~~~~~~~~~~~~~~~~~ 347 (560)
+ .+|... +..++..++.. .... ......|+++||||+.+ .+. .+...+.. +....
T Consensus 213 r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~--------~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~ 280 (1104)
T 4ddu_A 213 RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERP--------KNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR 280 (1104)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCC--------SSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB
T ss_pred ccchhhhHhcCCCHHHHHHHHHhcccchhhhhh--------ccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc
Confidence 4 677777 78888876410 0000 00156899999999533 322 12222211 00000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHH
Q 008602 348 VIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLK 427 (560)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~ 427 (560)
.......+.+.+... .+...+..++... ++++||||+++..++
T Consensus 281 ---------------------------------~~~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~ 323 (1104)
T 4ddu_A 281 ---------------------------------LVSVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGK 323 (1104)
T ss_dssp ---------------------------------CCCCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSHHHH
T ss_pred ---------------------------------CCCCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHHHHH
Confidence 000112233333333 3555666666663 589999999999999
Q ss_pred HHHHHHHHCCCcee-eccCCCCHHHHHHHHHHhhcCCceEEEE----ecCcccCCCCCC-CCEEEEccCCC---------
Q 008602 428 DAVFKLEARGMKAA-ELHGDLGKLARSTTLKKFKNGEVRVLVT----NELSARGLDVAE-CDLVVNLDLPT--------- 492 (560)
Q Consensus 428 ~~~~~L~~~~~~~~-~lhg~~~~~~r~~v~~~F~~g~~~iLva----T~~~~~Gidip~-v~~VI~~~~p~--------- 492 (560)
.++..|...++.+. .+||+ |.+ ++.|++|+++|||| |+++++|||+|+ |++|||||+|.
T Consensus 324 ~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~ 397 (1104)
T 4ddu_A 324 ELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDK 397 (1104)
T ss_dssp HHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSS
T ss_pred HHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCccccc
Confidence 99999999999998 99993 555 99999999999999 999999999999 99999999998
Q ss_pred ---------------------------------------------------------------ChhhhHhhhccccCCCC
Q 008602 493 ---------------------------------------------------------------DSIHYAHRAGRTGRLGR 509 (560)
Q Consensus 493 ---------------------------------------------------------------s~~~y~Qr~GR~gR~g~ 509 (560)
++.+|+||+||+||.|.
T Consensus 398 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~ 477 (1104)
T 4ddu_A 398 APRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILN 477 (1104)
T ss_dssp CCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEET
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccC
Confidence 77899999999999653
Q ss_pred ----cceEEEEecCccHHHHHHHHHHhC--CCccccccC
Q 008602 510 ----RGTVVSICEEPEVFVVKKMQKQLA--VPIQACEFT 542 (560)
Q Consensus 510 ----~g~~~~l~~~~e~~~~~~l~~~l~--~~~~~~~~~ 542 (560)
+|.+++++ +|...++.+.+.++ ..++..++.
T Consensus 478 gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~ 514 (1104)
T 4ddu_A 478 GVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEA 514 (1104)
T ss_dssp TEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGG
T ss_pred CCcccceEEEEE--ecHHHHHHHHHHHhhhccccccccc
Confidence 56677776 67778888888775 334444443
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.1e-44 Score=397.11 Aligned_cols=379 Identities=16% Similarity=0.157 Sum_probs=222.4
Q ss_pred HHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 123 ERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 123 ~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
..+..+||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.... ...+.++||++||++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-----------~~~~~~~lvl~Pt~~ 72 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----------QGQKGKVVFFANQIP 72 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-----------TTCCCCEEEECSSHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-----------cCCCCeEEEEECCHH
Confidence 346678999999999999999999999999999999999999999998763211 122367999999999
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc-cCCCeeEEEEechhhhhc
Q 008602 203 LGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL-HTHGCRFLVLDEIDELLS 281 (560)
Q Consensus 203 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~-~~~~l~llIiDE~h~l~~ 281 (560)
|+.||++++.+++...+. .+..+.|+.....+...+.. .++|+|+||++|.+.+..+.+ .+.++++|||||||++.+
T Consensus 73 L~~Q~~~~~~~~~~~~~~-~v~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 73 VYEQNKSVFSKYFERHGY-RVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 150 (696)
T ss_dssp HHHHHHHHHHHHTTTTTC-CEEEECSSSCSSSCHHHHHH-TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCST
T ss_pred HHHHHHHHHHHHhccCCc-eEEEEeCCccccccHHHhcc-CCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccC
Confidence 999999999998765433 36778887765555555544 368999999999999888777 788999999999999776
Q ss_pred cchH-HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC-------hHHHHHH-H------------------
Q 008602 282 FNFR-EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP-------FSVIRAA-R------------------ 334 (560)
Q Consensus 282 ~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~-------~~~~~~~-~------------------ 334 (560)
.... ..+...+...... ...+..++++||||+. .+..... .
T Consensus 151 ~~~~~~i~~~~l~~~~~~------------~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 218 (696)
T 2ykg_A 151 QHPYNMIMFNYLDQKLGG------------SSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLE 218 (696)
T ss_dssp TCHHHHHHHHHHHHHHTT------------CCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHH
T ss_pred cccHHHHHHHHHHHhhcc------------cCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchH
Confidence 5432 2223333321100 0124579999999996 2221111 1
Q ss_pred ---HcCCCCeEEeeccccccCC------------------CCCCCCCCCCCCCCCCCCC---------------------
Q 008602 335 ---SWGHDPLLVQAKNVIPLES------------------MPATGPGNLSGPMSGSSSN--------------------- 372 (560)
Q Consensus 335 ---~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~--------------------- 372 (560)
.+...|............. ........+..........
T Consensus 219 ~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (696)
T 2ykg_A 219 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPD 298 (696)
T ss_dssp HHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC-----
T ss_pred HHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhccc
Confidence 1111221110000000000 0000000000000000000
Q ss_pred --cch--------------------hh--h---------------cccccCCcccceEEEE----------------ech
Q 008602 373 --SNL--------------------QA--K---------------QADQSLPPALKHYYCV----------------TKL 397 (560)
Q Consensus 373 --~~~--------------------~~--~---------------~~~~~~~~~~~~~~~~----------------~~~ 397 (560)
... .. . .........+.+.+.. ...
T Consensus 299 ~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 378 (696)
T 2ykg_A 299 KDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 378 (696)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGC
T ss_pred chhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 000 00 0 0000000011111000 013
Q ss_pred hhHHHHHHHHHHhc----CCCeEEEEEcChhhHHHHHHHHHHCC----Cceeec--------cCCCCHHHHHHHHHHhhc
Q 008602 398 QHKVDTLRRCVHAL----DAQTVIAFMNNTRQLKDAVFKLEARG----MKAAEL--------HGDLGKLARSTTLKKFKN 461 (560)
Q Consensus 398 ~~k~~~l~~~~~~~----~~~~~iif~~~~~~~~~~~~~L~~~~----~~~~~l--------hg~~~~~~r~~v~~~F~~ 461 (560)
..+...|.+++... .++++||||+++..++.++..|...+ +++..+ ||+|++.+|.+++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45777777777654 67899999999999999999999987 888888 559999999999999998
Q ss_pred -CCceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHH
Q 008602 462 -GEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528 (560)
Q Consensus 462 -g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l 528 (560)
|+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.|+++++..+......+
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 77999999998776444444
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-44 Score=396.04 Aligned_cols=357 Identities=20% Similarity=0.229 Sum_probs=256.8
Q ss_pred HHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 125 LEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 125 l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
...++| +|+|+|.++++.+.+++++++++|||+|||++|.++++..+ ..+.+++|++||++|+
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l----------------~~g~rvL~l~PtkaLa 142 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL----------------KNKQRVIYTSPIKALS 142 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH----------------HTTCEEEEEESSHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh----------------ccCCeEEEECChHHHH
Confidence 345678 69999999999999999999999999999999999999887 4467899999999999
Q ss_pred HHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccch
Q 008602 205 MQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNF 284 (560)
Q Consensus 205 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~ 284 (560)
.|+++++.+.++ .++.+.|+.... ..++|+|+||++|.+++..+...+.++++|||||+|++.+.++
T Consensus 143 ~Q~~~~l~~~~~-----~vglltGd~~~~--------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~r 209 (1010)
T 2xgj_A 143 NQKYRELLAEFG-----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER 209 (1010)
T ss_dssp HHHHHHHHHHHS-----CEEEECSSCEEC--------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHhC-----CEEEEeCCCccC--------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccch
Confidence 999999999876 366677766543 2467999999999998888888889999999999999999888
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHH---cCCCCeEEeecccccc--CCCCCCCC
Q 008602 285 REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARS---WGHDPLLVQAKNVIPL--ESMPATGP 359 (560)
Q Consensus 285 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~ 359 (560)
...+..++..++ +..+++++|||+++. ..+..+ ....+..+......+. ..+.....
T Consensus 210 g~~~e~il~~l~-----------------~~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~ 271 (1010)
T 2xgj_A 210 GVVWEETIILLP-----------------DKVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH 271 (1010)
T ss_dssp HHHHHHHHHHSC-----------------TTCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETT
T ss_pred hHHHHHHHHhcC-----------------CCCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCCCcccceEEEEecC
Confidence 888888887763 578999999998754 333333 2233443332222221 11000000
Q ss_pred C-CCCCCCCCCCCCcchhhhcccccCC------------cccce-EEEEe--c--hhhHHHHHHHHHHhcCCCeEEEEEc
Q 008602 360 G-NLSGPMSGSSSNSNLQAKQADQSLP------------PALKH-YYCVT--K--LQHKVDTLRRCVHALDAQTVIAFMN 421 (560)
Q Consensus 360 ~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~--~--~~~k~~~l~~~~~~~~~~~~iif~~ 421 (560)
. .......................+. ..... ..... . .......+...+......++||||+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~ 351 (1010)
T 2xgj_A 272 GDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSF 351 (1010)
T ss_dssp SSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEES
T ss_pred CcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEEC
Confidence 0 0000000000000000000000000 00000 00000 0 0223344555555555679999999
Q ss_pred ChhhHHHHHHHHHHCCC---------------------------------------ceeeccCCCCHHHHHHHHHHhhcC
Q 008602 422 NTRQLKDAVFKLEARGM---------------------------------------KAAELHGDLGKLARSTTLKKFKNG 462 (560)
Q Consensus 422 ~~~~~~~~~~~L~~~~~---------------------------------------~~~~lhg~~~~~~r~~v~~~F~~g 462 (560)
++..++.++..|...++ .+..+||+|++.+|..+++.|++|
T Consensus 352 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G 431 (1010)
T 2xgj_A 352 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 431 (1010)
T ss_dssp SHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC
Confidence 99999999988876443 277899999999999999999999
Q ss_pred CceEEEEecCcccCCCCCCCCEEEE----ccC----CCChhhhHhhhccccCCCC--cceEEEEecCc-cHHHHHHHH
Q 008602 463 EVRVLVTNELSARGLDVAECDLVVN----LDL----PTDSIHYAHRAGRTGRLGR--RGTVVSICEEP-EVFVVKKMQ 529 (560)
Q Consensus 463 ~~~iLvaT~~~~~Gidip~v~~VI~----~~~----p~s~~~y~Qr~GR~gR~g~--~g~~~~l~~~~-e~~~~~~l~ 529 (560)
.++|||||+++++|||+|++++||+ ||. |.|+.+|+||+|||||.|. .|.||+++++. +...+..+.
T Consensus 432 ~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 432 FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp CCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred CCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999 998 8999999999999999986 59999999866 555655553
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.1e-44 Score=382.89 Aligned_cols=369 Identities=17% Similarity=0.210 Sum_probs=228.8
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+|+|+|.++++.+++++++++++|||+|||++|++|++..+.... ...+.++||++||++|+.||++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----------~~~~~~~lil~P~~~L~~q~~~~~ 72 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----------CGQKGKVVFFANQIPVYEQQATVF 72 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----------cCCCCEEEEEeCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998874311 123678999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc-cCCCeeEEEEechhhhhccchHHH-HH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL-HTHGCRFLVLDEIDELLSFNFREA-MH 289 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~-~~~~l~llIiDE~h~l~~~~~~~~-l~ 289 (560)
.+++...+.. +..+.|+.........+.. .++|+|+||++|.+.+....+ .+.++++|||||||++.+.+.... +.
T Consensus 73 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 150 (555)
T 3tbk_A 73 SRYFERLGYN-IASISGATSDSVSVQHIIE-DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMF 150 (555)
T ss_dssp HHHHHTTTCC-EEEECTTTGGGSCHHHHHH-HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHH
T ss_pred HHHhccCCcE-EEEEcCCCcchhhHHHHhc-CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHH
Confidence 9988655443 6678888766555444443 368999999999999888777 788999999999999887653332 33
Q ss_pred HHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChH-----------HHHHHHHcCCCCeEEeec-cccccCCCCCC
Q 008602 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS-----------VIRAARSWGHDPLLVQAK-NVIPLESMPAT 357 (560)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 357 (560)
..+....... ..+..+++++|||+... +..+.. .+....+.... ....+..+...
T Consensus 151 ~~~~~~~~~~------------~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~ 217 (555)
T 3tbk_A 151 RYLDHKLGES------------RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYK 217 (555)
T ss_dssp HHHHHHTSSC------------CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCC
T ss_pred HHHHhhhccc------------cCCCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCC
Confidence 3333321110 01457999999999542 111112 22211111111 00000000000
Q ss_pred CCC---CCCCCCC--------------------------------CCCCCcc----hhhh--c--ccccCCcc-------
Q 008602 358 GPG---NLSGPMS--------------------------------GSSSNSN----LQAK--Q--ADQSLPPA------- 387 (560)
Q Consensus 358 ~~~---~~~~~~~--------------------------------~~~~~~~----~~~~--~--~~~~~~~~------- 387 (560)
... ....... ....... .... . .....+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (555)
T 3tbk_A 218 PQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVC 297 (555)
T ss_dssp CCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHH
T ss_pred CceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHH
Confidence 000 0000000 0000000 0000 0 00000000
Q ss_pred -------------------------------cceE-------------------------------EEEechhhHHHHHH
Q 008602 388 -------------------------------LKHY-------------------------------YCVTKLQHKVDTLR 405 (560)
Q Consensus 388 -------------------------------~~~~-------------------------------~~~~~~~~k~~~l~ 405 (560)
+..+ ........|...+.
T Consensus 298 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 377 (555)
T 3tbk_A 298 KALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLY 377 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHH
Confidence 0000 00001134556666
Q ss_pred HHHHh----cCCCeEEEEEcChhhHHHHHHHHHHCC----C--------ceeeccCCCCHHHHHHHHHHhhc-CCceEEE
Q 008602 406 RCVHA----LDAQTVIAFMNNTRQLKDAVFKLEARG----M--------KAAELHGDLGKLARSTTLKKFKN-GEVRVLV 468 (560)
Q Consensus 406 ~~~~~----~~~~~~iif~~~~~~~~~~~~~L~~~~----~--------~~~~lhg~~~~~~r~~v~~~F~~-g~~~iLv 468 (560)
+++.. ..++++||||+++..++.++..|...+ + ....+||+|++.+|..+++.|++ |+++|||
T Consensus 378 ~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv 457 (555)
T 3tbk_A 378 LVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI 457 (555)
T ss_dssp HHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEE
T ss_pred HHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEE
Confidence 66654 356999999999999999999999863 3 34455669999999999999999 9999999
Q ss_pred EecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHH
Q 008602 469 TNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528 (560)
Q Consensus 469 aT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l 528 (560)
||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+|+|+++.+......+
T Consensus 458 aT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 458 ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp ECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred EcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999999999999999999999999 999 88999999998866544444
No 29
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.5e-44 Score=380.49 Aligned_cols=363 Identities=16% Similarity=0.181 Sum_probs=199.4
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+|+|+|.++++.+++++++++++|||+|||++|++|++..+.... ...+.++||++||++|+.||++++
T Consensus 7 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----------~~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----------AGRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp -CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-----------ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998873211 122678999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc-cCCCeeEEEEechhhhhccchHHHH-H
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL-HTHGCRFLVLDEIDELLSFNFREAM-H 289 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~-~~~~l~llIiDE~h~l~~~~~~~~l-~ 289 (560)
.+++...+.. +..+.|+.........+.. .++|+|+||++|.+.+....+ .+.++++|||||||++.+.+....+ .
T Consensus 76 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 153 (556)
T 4a2p_A 76 KHHFERQGYS-VQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 153 (556)
T ss_dssp HHHHGGGTCC-EEECCCC-----CHHHHHH-HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHH
T ss_pred HHHhcccCce-EEEEeCCCCcchhHHHhhC-CCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHH
Confidence 9987654333 6677777765555444443 368999999999999988877 7899999999999998877654443 2
Q ss_pred HHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh-----------HHHHHHHHcCCCCeEEeeccccccCCCCCC-
Q 008602 290 RIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF-----------SVIRAARSWGHDPLLVQAKNVIPLESMPAT- 357 (560)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 357 (560)
.++...... ..+..+++++|||+.. .+..+...+..............+..+...
T Consensus 154 ~~~~~~~~~-------------~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (556)
T 4a2p_A 154 RYLEQKFNS-------------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKP 220 (556)
T ss_dssp HHHHHHHCC----------------CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCC
T ss_pred HHHHhhhcc-------------cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCC
Confidence 332221110 0245799999999953 122222221111110000000000000000
Q ss_pred C--CCCCCCCCCC--------------------------------CCCCcc---hhhh--c--ccccCCc----------
Q 008602 358 G--PGNLSGPMSG--------------------------------SSSNSN---LQAK--Q--ADQSLPP---------- 386 (560)
Q Consensus 358 ~--~~~~~~~~~~--------------------------------~~~~~~---~~~~--~--~~~~~~~---------- 386 (560)
. .......... ...... .... . .....+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (556)
T 4a2p_A 221 EIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRA 300 (556)
T ss_dssp CEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHH
T ss_pred ceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 0 0000000000 000000 0000 0 0000000
Q ss_pred ----------------------------ccceE-------------------------------EEEechhhHHHHHHHH
Q 008602 387 ----------------------------ALKHY-------------------------------YCVTKLQHKVDTLRRC 407 (560)
Q Consensus 387 ----------------------------~~~~~-------------------------------~~~~~~~~k~~~l~~~ 407 (560)
.+..+ ........|...|.++
T Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~ 380 (556)
T 4a2p_A 301 LFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCI 380 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHH
Confidence 00000 0000123456666666
Q ss_pred HHh----cCCCeEEEEEcChhhHHHHHHHHHHC------------CCceeeccCCCCHHHHHHHHHHhhc-CCceEEEEe
Q 008602 408 VHA----LDAQTVIAFMNNTRQLKDAVFKLEAR------------GMKAAELHGDLGKLARSTTLKKFKN-GEVRVLVTN 470 (560)
Q Consensus 408 ~~~----~~~~~~iif~~~~~~~~~~~~~L~~~------------~~~~~~lhg~~~~~~r~~v~~~F~~-g~~~iLvaT 470 (560)
+.. ..+.++||||+++..++.++..|.+. |.....+||+|++.+|..++++|++ |+++|||||
T Consensus 381 l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT 460 (556)
T 4a2p_A 381 LDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIAT 460 (556)
T ss_dssp HHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEE
T ss_pred HHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEc
Confidence 654 46789999999999999999999875 4455566888999999999999999 999999999
Q ss_pred cCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccH
Q 008602 471 ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522 (560)
Q Consensus 471 ~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~ 522 (560)
+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.||+|+++.+.
T Consensus 461 ~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 461 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp C-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999999999999999999999999 999 78999999987754
No 30
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.3e-43 Score=371.79 Aligned_cols=328 Identities=15% Similarity=0.147 Sum_probs=245.0
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
..|| .|||+|..+++.+++|+ +..++||+|||++|.+|++... ..|++|+|++||++||.|
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~a----------------L~g~~vlVltptreLA~q 139 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNA----------------LTGKGVHVVTVNEYLASR 139 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHH----------------TTSSCEEEEESSHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHH----------------HcCCCEEEEeCCHHHHHH
Confidence 4699 99999999999999998 9999999999999999998544 235679999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcC------CccCCCeeEEEEechhhh
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAG------KLHTHGCRFLVLDEIDEL 279 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~------~~~~~~l~llIiDE~h~l 279 (560)
.++++..+....+. .+++++||.+....... ..++|+|+||++| .+++..+ ...++.+.++||||||+|
T Consensus 140 d~e~~~~l~~~lgl-~v~~i~gg~~~~~r~~~---~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~m 215 (844)
T 1tf5_A 140 DAEQMGKIFEFLGL-TVGLNLNSMSKDEKREA---YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSI 215 (844)
T ss_dssp HHHHHHHHHHHTTC-CEEECCTTSCHHHHHHH---HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHH
T ss_pred HHHHHHHHHhhcCC-eEEEEeCCCCHHHHHHh---cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhh
Confidence 99999988766544 47889999876544333 2478999999999 6665543 356788999999999998
Q ss_pred h-ccc---------------hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEE-----------------EEEeeCC
Q 008602 280 L-SFN---------------FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTI-----------------MVSATVP 326 (560)
Q Consensus 280 ~-~~~---------------~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------------~~SAT~~ 326 (560)
+ +.. |...+..++..++....... ....+|++ ++|||.+
T Consensus 216 LiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~v--------d~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~ 287 (844)
T 1tf5_A 216 LIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTY--------DIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHV 287 (844)
T ss_dssp HTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCC--------CSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGH
T ss_pred hhhccccchhhcCCcccchhHHHHHHHHHHhCccccccee--------ccccceEEecHHHHHHHHHHhCccccCCCccc
Confidence 8 553 77888888877752000000 00223343 5566543
Q ss_pred --------------------------------------------------------------------------------
Q 008602 327 -------------------------------------------------------------------------------- 326 (560)
Q Consensus 327 -------------------------------------------------------------------------------- 326 (560)
T Consensus 288 ~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y 367 (844)
T 1tf5_A 288 ALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMY 367 (844)
T ss_dssp HHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHH
Confidence
Q ss_pred -----------hHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEe
Q 008602 327 -----------FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVT 395 (560)
Q Consensus 327 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (560)
.+..++...|.-+...+.+. ......-...+...
T Consensus 368 ~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn-----------------------------------~p~~r~d~~d~v~~ 412 (844)
T 1tf5_A 368 EKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN-----------------------------------RPVVRDDRPDLIYR 412 (844)
T ss_dssp SEEEEEESCCGGGHHHHHHHHCCCEEECCCS-----------------------------------SCCCCEECCCEEES
T ss_pred hhhccCCcccchhHHHHHHHhCCceEEecCC-----------------------------------CCcccccCCcEEEe
Confidence 33333322222211111000 00000001113334
Q ss_pred chhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCc
Q 008602 396 KLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473 (560)
Q Consensus 396 ~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~ 473 (560)
....|...+.+.+.. ..+.++||||+++..++.++..|.+.|+++..+||++.+.++..+...|+.| .|+|||+++
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmA 490 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMA 490 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCcc
Confidence 566777787777754 3577999999999999999999999999999999999888887776666665 699999999
Q ss_pred ccCCCCC--------CCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccH
Q 008602 474 ARGLDVA--------ECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522 (560)
Q Consensus 474 ~~Gidip--------~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~ 522 (560)
+||+||+ ++.+||+|+.|.|...|+||+||+||.|.+|.+++|++.+|.
T Consensus 491 gRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 491 GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp STTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred ccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 9999999 788999999999999999999999999999999999987764
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-42 Score=384.26 Aligned_cols=368 Identities=16% Similarity=0.178 Sum_probs=207.5
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
.+|+..|+|+|.++++.++.++++++++|||+|||++|++|++..+.... ...+.++||++||++|+.|
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----------~~~~~~~Lvl~Pt~~L~~Q 311 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----------AGRKAKVVFLATKVPVYEQ 311 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----------SSCCCCEEEECSSHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----------ccCCCeEEEEeCCHHHHHH
Confidence 44677999999999999999999999999999999999999998873311 1236789999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc-cCCCeeEEEEechhhhhccchH
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL-HTHGCRFLVLDEIDELLSFNFR 285 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~-~~~~l~llIiDE~h~l~~~~~~ 285 (560)
|++++++++...+. .+..+.|+.........+.. .++|+|+||++|.+.+....+ .+.++++|||||||++.+.+..
T Consensus 312 ~~~~~~~~~~~~~~-~v~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~ 389 (797)
T 4a2q_A 312 QKNVFKHHFERQGY-SVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPY 389 (797)
T ss_dssp HHHHHHHHHGGGTC-CEEEECCC-----CHHHHHH-TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHH
T ss_pred HHHHHHHhcccCCc-eEEEEeCCcchhhhHHHhhC-CCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccH
Confidence 99999999765433 36778888766555555544 468999999999998888777 7889999999999998776543
Q ss_pred HHH-HHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh-----------HHHHHHHHcCCCCeEEeeccccccC-
Q 008602 286 EAM-HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF-----------SVIRAARSWGHDPLLVQAKNVIPLE- 352 (560)
Q Consensus 286 ~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~- 352 (560)
..+ ..++...... ..+..+++++|||+.. .+..+..................+.
T Consensus 390 ~~i~~~~~~~~~~~-------------~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~ 456 (797)
T 4a2q_A 390 NVLMTRYLEQKFNS-------------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR 456 (797)
T ss_dssp HHHHHHHHHHHHTT-------------CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH
T ss_pred HHHHHHHHHHhhcc-------------CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHH
Confidence 333 3333322110 1245789999999952 2222222221111111000000000
Q ss_pred --CCCCCCCCCCCC--------------------------------CCCCCCCCcc---hhhh--c--ccccCCcc----
Q 008602 353 --SMPATGPGNLSG--------------------------------PMSGSSSNSN---LQAK--Q--ADQSLPPA---- 387 (560)
Q Consensus 353 --~~~~~~~~~~~~--------------------------------~~~~~~~~~~---~~~~--~--~~~~~~~~---- 387 (560)
............ .......... .... . ....++..
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (797)
T 4a2q_A 457 FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 536 (797)
T ss_dssp HSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHH
T ss_pred hcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhh
Confidence 000000000000 0000000000 0000 0 00000000
Q ss_pred ----------------------------------cceE-------------------------------EEEechhhHHH
Q 008602 388 ----------------------------------LKHY-------------------------------YCVTKLQHKVD 402 (560)
Q Consensus 388 ----------------------------------~~~~-------------------------------~~~~~~~~k~~ 402 (560)
+..+ ........|..
T Consensus 537 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~ 616 (797)
T 4a2q_A 537 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 616 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHH
Confidence 0000 00001234566
Q ss_pred HHHHHHHh----cCCCeEEEEEcChhhHHHHHHHHHHC------------CCceeeccCCCCHHHHHHHHHHhhc-CCce
Q 008602 403 TLRRCVHA----LDAQTVIAFMNNTRQLKDAVFKLEAR------------GMKAAELHGDLGKLARSTTLKKFKN-GEVR 465 (560)
Q Consensus 403 ~l~~~~~~----~~~~~~iif~~~~~~~~~~~~~L~~~------------~~~~~~lhg~~~~~~r~~v~~~F~~-g~~~ 465 (560)
.|..++.. ..+.++||||+++..++.++..|.+. |..+..+||+|++.+|..+++.|++ |+++
T Consensus 617 ~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~ 696 (797)
T 4a2q_A 617 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696 (797)
T ss_dssp HHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS
T ss_pred HHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce
Confidence 66666654 56789999999999999999999874 4556677899999999999999999 9999
Q ss_pred EEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccH
Q 008602 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522 (560)
Q Consensus 466 iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~ 522 (560)
|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.||+|+++.+.
T Consensus 697 vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp EEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999999999999999999999999999 999 88999999987754
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-41 Score=357.64 Aligned_cols=353 Identities=22% Similarity=0.300 Sum_probs=247.0
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+|+|+|.++++.++++ ++++++|||+|||++++.++...+. ..+.++||++|+++|+.||++++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~---------------~~~~~~liv~P~~~L~~q~~~~~ 72 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT---------------KYGGKVLMLAPTKPLVLQHAESF 72 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH---------------HSCSCEEEECSSHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh---------------cCCCeEEEEECCHHHHHHHHHHH
Confidence 7999999999999999 9999999999999999999988762 23567999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i 291 (560)
.++++.. ...+..+.|+........... .++|+|+||+.|...+....+.+.++++||+||||++.+......+...
T Consensus 73 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~--~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~ 149 (494)
T 1wp9_A 73 RRLFNLP-PEKIVALTGEKSPEERSKAWA--RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIARE 149 (494)
T ss_dssp HHHBCSC-GGGEEEECSCSCHHHHHHHHH--HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHhCcc-hhheEEeeCCcchhhhhhhcc--CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHH
Confidence 9987532 234666777766554433333 3579999999999988888888899999999999998766555555444
Q ss_pred HHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChH---HHHHHHHcCCCCeEEeeccccccCCCCCCCCCC-------
Q 008602 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS---VIRAARSWGHDPLLVQAKNVIPLESMPATGPGN------- 361 (560)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 361 (560)
+... .+..+++++|||+..+ ...+.....................+.......
T Consensus 150 ~~~~-----------------~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (494)
T 1wp9_A 150 YKRQ-----------------AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP 212 (494)
T ss_dssp HHHH-----------------CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC
T ss_pred HHhc-----------------CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCc
Confidence 4333 2567899999999743 333333332222222111100000000000000
Q ss_pred -------------------------CCCCCCCCCCCcch-------h--hhcccccCC----------------------
Q 008602 362 -------------------------LSGPMSGSSSNSNL-------Q--AKQADQSLP---------------------- 385 (560)
Q Consensus 362 -------------------------~~~~~~~~~~~~~~-------~--~~~~~~~~~---------------------- 385 (560)
+............. . .........
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (494)
T 1wp9_A 213 EIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQ 292 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 00000000000000 0 000000000
Q ss_pred --cccceEE-----------------------------------EEechhhHHHHHHHHHHh----cCCCeEEEEEcChh
Q 008602 386 --PALKHYY-----------------------------------CVTKLQHKVDTLRRCVHA----LDAQTVIAFMNNTR 424 (560)
Q Consensus 386 --~~~~~~~-----------------------------------~~~~~~~k~~~l~~~~~~----~~~~~~iif~~~~~ 424 (560)
.....+. .......|...+.+++.. ..++++||||+++.
T Consensus 293 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 372 (494)
T 1wp9_A 293 GLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRE 372 (494)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHH
T ss_pred cHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHH
Confidence 0000000 000233466666777766 46899999999999
Q ss_pred hHHHHHHHHHHCCCceeeccC--------CCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCChhh
Q 008602 425 QLKDAVFKLEARGMKAAELHG--------DLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIH 496 (560)
Q Consensus 425 ~~~~~~~~L~~~~~~~~~lhg--------~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~ 496 (560)
.++.++..|...++.+..+|| +|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+|+..
T Consensus 373 ~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~ 452 (494)
T 1wp9_A 373 TAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIR 452 (494)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccccCCCCcceEEEEecCcc
Q 008602 497 YAHRAGRTGRLGRRGTVVSICEEPE 521 (560)
Q Consensus 497 y~Qr~GR~gR~g~~g~~~~l~~~~e 521 (560)
|.||+||+||.|+ |.+|.|+.+.+
T Consensus 453 ~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 453 SIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp HHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred HHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999998 99999998774
No 33
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3.5e-42 Score=383.69 Aligned_cols=357 Identities=17% Similarity=0.196 Sum_probs=255.3
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
.++| +|+|+|.++++.++++++++++||||+|||++|+.++...+ ..+.+++|++|+++|+.|
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~----------------~~g~~vlvl~PtraLa~Q 97 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH----------------RNMTKTIYTSPIKALSNQ 97 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH----------------HTTCEEEEEESCGGGHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH----------------hcCCeEEEEeCCHHHHHH
Confidence 4577 79999999999999999999999999999999999998876 456789999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHH
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFRE 286 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~ 286 (560)
+++++.+.+.+ ..++.+.|+.... ..++|+|+||++|.+++......+.++++|||||||++.++++..
T Consensus 98 ~~~~l~~~~~~---~~v~~l~G~~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~ 166 (997)
T 4a4z_A 98 KFRDFKETFDD---VNIGLITGDVQIN--------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGV 166 (997)
T ss_dssp HHHHHHTTC-----CCEEEECSSCEEC--------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTC
T ss_pred HHHHHHHHcCC---CeEEEEeCCCccC--------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHH
Confidence 99999987642 3466777765432 346899999999999888888788999999999999999998888
Q ss_pred HHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcC---CCCeEEeecc--ccccCCCCCCCCC-
Q 008602 287 AMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWG---HDPLLVQAKN--VIPLESMPATGPG- 360 (560)
Q Consensus 287 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~- 360 (560)
.+..++..++ +..+++++|||+++.. .+..++. ..+..+.... ..++.........
T Consensus 167 ~~e~ii~~l~-----------------~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~ 228 (997)
T 4a4z_A 167 VWEEVIIMLP-----------------QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKEL 228 (997)
T ss_dssp CHHHHHHHSC-----------------TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEE
T ss_pred HHHHHHHhcc-----------------cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcc
Confidence 8888887763 5789999999997543 4444432 1222222111 1111100000000
Q ss_pred -CCCCCCCCCCC-------------------------------Ccc-----hhh------------------hcccccCC
Q 008602 361 -NLSGPMSGSSS-------------------------------NSN-----LQA------------------KQADQSLP 385 (560)
Q Consensus 361 -~~~~~~~~~~~-------------------------------~~~-----~~~------------------~~~~~~~~ 385 (560)
........... ... ... ........
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~ 308 (997)
T 4a4z_A 229 IPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGS 308 (997)
T ss_dssp EEEECTTCCBCHHHHHHHHHHHC---------------------------------------------------------
T ss_pred hhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000000000 000 000 00000000
Q ss_pred cccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCC---------------------------
Q 008602 386 PALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGM--------------------------- 438 (560)
Q Consensus 386 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~--------------------------- 438 (560)
.....+........+...+...+.....+++||||+++..++.++..|...++
T Consensus 309 ~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 388 (997)
T 4a4z_A 309 NKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDL 388 (997)
T ss_dssp --------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTC
T ss_pred cccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcc
Confidence 11112222333455667777778777778999999999999999999976554
Q ss_pred ------------ceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCC---------Chhhh
Q 008602 439 ------------KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPT---------DSIHY 497 (560)
Q Consensus 439 ------------~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~---------s~~~y 497 (560)
.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+ ..||+++.+. |..+|
T Consensus 389 ~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y 467 (997)
T 4a4z_A 389 PQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEF 467 (997)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHH
T ss_pred hhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHH
Confidence 5789999999999999999999999999999999999999999 6666666655 99999
Q ss_pred HhhhccccCCC--CcceEEEEec--CccHHHHHHHHH
Q 008602 498 AHRAGRTGRLG--RRGTVVSICE--EPEVFVVKKMQK 530 (560)
Q Consensus 498 ~Qr~GR~gR~g--~~g~~~~l~~--~~e~~~~~~l~~ 530 (560)
+||+|||||.| ..|.||+++. ..+...+..+..
T Consensus 468 ~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~ 504 (997)
T 4a4z_A 468 TQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM 504 (997)
T ss_dssp HHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHH
T ss_pred hHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhc
Confidence 99999999988 5788999983 345566655543
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.7e-43 Score=395.13 Aligned_cols=333 Identities=17% Similarity=0.206 Sum_probs=247.8
Q ss_pred HhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHH
Q 008602 126 EREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205 (560)
Q Consensus 126 ~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~ 205 (560)
..+||. | |+|.++++.+++|+|++++||||||||+ |.+|++..+. ..++++||++||++||.
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~---------------~~~~~~lil~PtreLa~ 113 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLA---------------LKGKRCYVIFPTSLLVI 113 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHH---------------TTSCCEEEEESCHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHh---------------hcCCeEEEEeccHHHHH
Confidence 357997 9 9999999999999999999999999998 7888877662 34678999999999999
Q ss_pred HHHHHHHHHhCCCCCc---eEEEEecCCChhHH---HHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhh
Q 008602 206 QIVREIKKLLGPSDKK---AVQQLVGGANRSRQ---EEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDEL 279 (560)
Q Consensus 206 Q~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l 279 (560)
|+++.+++++...+.. .+..++|+.....+ ...+.. ++|+|+||++|.+.+.. ++++++|||||||+|
T Consensus 114 Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~ 187 (1054)
T 1gku_B 114 QAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAI 187 (1054)
T ss_dssp HHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhh
Confidence 9999999988765541 47788888877664 333334 78999999999986554 668999999999998
Q ss_pred hccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCC
Q 008602 280 LSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGP 359 (560)
Q Consensus 280 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (560)
++ +...+..++..+........ .......|++++|||+++. ..+...+..++..+....
T Consensus 188 l~--~~~~~~~i~~~lgf~~~~~~------~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~------------ 246 (1054)
T 1gku_B 188 LK--ASKNVDKLLHLLGFHYDLKT------KSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGS------------ 246 (1054)
T ss_dssp HT--STHHHHHHHHHTTEEEETTT------TEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSC------------
T ss_pred hh--ccccHHHHHHHhCcchhhhh------hhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccC------------
Confidence 88 56777777776642111000 1113567899999999876 422222222111111000
Q ss_pred CCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCc
Q 008602 360 GNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMK 439 (560)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~ 439 (560)
.......+.+.+. ...+...+..++... ++++||||+++..++.++..|+.. ++
T Consensus 247 ---------------------~~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~ 300 (1054)
T 1gku_B 247 ---------------------SRITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FR 300 (1054)
T ss_dssp ---------------------CEECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SC
T ss_pred ---------------------cccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cC
Confidence 0000111222222 234445555666554 578999999999999999999988 99
Q ss_pred eeeccCCCCHHHHHHHHHHhhcCCceEEEE----ecCcccCCCCCCC-CEEEEccCC-----------------------
Q 008602 440 AAELHGDLGKLARSTTLKKFKNGEVRVLVT----NELSARGLDVAEC-DLVVNLDLP----------------------- 491 (560)
Q Consensus 440 ~~~lhg~~~~~~r~~v~~~F~~g~~~iLva----T~~~~~Gidip~v-~~VI~~~~p----------------------- 491 (560)
+..+||+| ..+++.|++|+++|||| |+++++|||+|+| ++||+||.|
T Consensus 301 v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 375 (1054)
T 1gku_B 301 IGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYL 375 (1054)
T ss_dssp EEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTT
T ss_pred eeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHH
Confidence 99999998 47889999999999999 8999999999996 999999999
Q ss_pred ------------------------------------------------CChhhhHhhhccccCCCCcc--eEEEEecCcc
Q 008602 492 ------------------------------------------------TDSIHYAHRAGRTGRLGRRG--TVVSICEEPE 521 (560)
Q Consensus 492 ------------------------------------------------~s~~~y~Qr~GR~gR~g~~g--~~~~l~~~~e 521 (560)
.+..+|+||+||+||.|..| .+++++..+|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d 455 (1054)
T 1gku_B 376 YRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDD 455 (1054)
T ss_dssp TSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecC
Confidence 68999999999999987665 4777777778
Q ss_pred HHHHHHHHHHhCC
Q 008602 522 VFVVKKMQKQLAV 534 (560)
Q Consensus 522 ~~~~~~l~~~l~~ 534 (560)
...+..+.+.++.
T Consensus 456 ~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 456 SELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 8888888888775
No 35
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-41 Score=379.51 Aligned_cols=367 Identities=15% Similarity=0.167 Sum_probs=206.5
Q ss_pred HhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHH
Q 008602 126 EREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205 (560)
Q Consensus 126 ~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~ 205 (560)
.-.++..|+|+|.++++.+++|+++++++|||+|||++|++|++..+.... ...+.++||++||++|+.
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-----------~~~~~~vLvl~Pt~~L~~ 310 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----------AGRKAKVVFLATKVPVYE 310 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-----------SSCCCCEEEECSSHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-----------ccCCCeEEEEeCCHHHHH
Confidence 344677999999999999999999999999999999999999998873311 122677999999999999
Q ss_pred HHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc-cCCCeeEEEEechhhhhccch
Q 008602 206 QIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL-HTHGCRFLVLDEIDELLSFNF 284 (560)
Q Consensus 206 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~-~~~~l~llIiDE~h~l~~~~~ 284 (560)
||++++++++...+.. +..++|+.....+...+.. .++|+|+||++|.+.+....+ .+.++++|||||||++.+.+.
T Consensus 311 Q~~~~~~~~~~~~~~~-v~~~~G~~~~~~~~~~~~~-~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~ 388 (936)
T 4a2w_A 311 QQKNVFKHHFERQGYS-VQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP 388 (936)
T ss_dssp HHHHHHHHHHHTTTCC-EEEECCC-----CCHHHHH-HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH
T ss_pred HHHHHHHHHhcccCce-EEEEECCcchhhHHHHhcc-CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc
Confidence 9999999988655433 6677787755544333333 358999999999998887777 788999999999999877643
Q ss_pred HHH-HHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh-----------HHHHHHHHcCCCCeEEeecc-----
Q 008602 285 REA-MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF-----------SVIRAARSWGHDPLLVQAKN----- 347 (560)
Q Consensus 285 ~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~----- 347 (560)
... +..++...... ..+..+++++|||+.. .+..+.... ....+.....
T Consensus 389 ~~~i~~~~~~~~~~~-------------~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L-~~~~i~~~~~~~~~l 454 (936)
T 4a2w_A 389 YNVLMTRYLEQKFNS-------------ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQEL 454 (936)
T ss_dssp HHHHHHHHHHHHHTT-------------CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-TCSEEECCCSSHHHH
T ss_pred HHHHHHHHHHHhhcc-------------CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhc-CCceeecccccHHHH
Confidence 222 33333322111 1245789999999952 222222211 1111110000
Q ss_pred --ccccCC--CCCCCCCCCCC----------------------------CCCCCCCCc-c--hhhh----cccccCCcc-
Q 008602 348 --VIPLES--MPATGPGNLSG----------------------------PMSGSSSNS-N--LQAK----QADQSLPPA- 387 (560)
Q Consensus 348 --~~~~~~--~~~~~~~~~~~----------------------------~~~~~~~~~-~--~~~~----~~~~~~~~~- 387 (560)
...... ...... .... ......... . .... .....++..
T Consensus 455 ~~~~~~p~~~~~~~~~-~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~ 533 (936)
T 4a2w_A 455 QRFMNKPEIDVRLVKR-RIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKE 533 (936)
T ss_dssp HHHSCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHH
T ss_pred HHhccCCcceEEeccc-ccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccc
Confidence 000000 000000 0000 000000000 0 0000 000000000
Q ss_pred -------------------------------------cceEE-------------------------------EEechhh
Q 008602 388 -------------------------------------LKHYY-------------------------------CVTKLQH 399 (560)
Q Consensus 388 -------------------------------------~~~~~-------------------------------~~~~~~~ 399 (560)
+..++ .......
T Consensus 534 ~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~ 613 (936)
T 4a2w_A 534 EESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENP 613 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 00000 0000234
Q ss_pred HHHHHHHHHHh----cCCCeEEEEEcChhhHHHHHHHHHHC------------CCceeeccCCCCHHHHHHHHHHhhc-C
Q 008602 400 KVDTLRRCVHA----LDAQTVIAFMNNTRQLKDAVFKLEAR------------GMKAAELHGDLGKLARSTTLKKFKN-G 462 (560)
Q Consensus 400 k~~~l~~~~~~----~~~~~~iif~~~~~~~~~~~~~L~~~------------~~~~~~lhg~~~~~~r~~v~~~F~~-g 462 (560)
|...|.+++.. ..+.++||||+++..++.++..|.+. |..+..+||+|++.+|..++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 66666667765 35689999999999999999999986 4555667899999999999999999 9
Q ss_pred CceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccH
Q 008602 463 EVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522 (560)
Q Consensus 463 ~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~ 522 (560)
+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||. ..|.+|++++..+.
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999999999999999999999999999999999 999 77999999987644
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=380.75 Aligned_cols=369 Identities=16% Similarity=0.202 Sum_probs=221.4
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH-HHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI-VRE 210 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~-~~~ 210 (560)
+|+|+|.++++.+++++++++++|||+|||++|++|++..+..... ...+.++||++|+++|+.|| +++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----------~~~~~~vlvl~P~~~L~~Q~~~~~ 76 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK----------ASEPGKVIVLVNKVLLVEQLFRKE 76 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH----------HTCCCCBCCEESCSHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc----------cCCCCeEEEEECCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999987622100 02236799999999999999 999
Q ss_pred HHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHH------HcCCccCCCeeEEEEechhhhhccc-
Q 008602 211 IKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEIS------AAGKLHTHGCRFLVLDEIDELLSFN- 283 (560)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l------~~~~~~~~~l~llIiDE~h~l~~~~- 283 (560)
+++++... ..+..+.|+.........+. +.++|+|+||++|.+.+ ....+.+.++++|||||||++....
T Consensus 77 l~~~~~~~--~~v~~~~g~~~~~~~~~~~~-~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~ 153 (699)
T 4gl2_A 77 FQPFLKKW--YRVIGLSGDTQLKISFPEVV-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV 153 (699)
T ss_dssp HHHHHTTT--SCEEEEC----CCCCHHHHH-HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBS
T ss_pred HHHHcCcC--ceEEEEeCCcchhhHHHhhh-cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccch
Confidence 99988652 34667777765554444443 35689999999999877 4455678899999999999975543
Q ss_pred hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChH-----------HHHHHHHcCCCCeEEeecccc---
Q 008602 284 FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS-----------VIRAARSWGHDPLLVQAKNVI--- 349 (560)
Q Consensus 284 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~~--- 349 (560)
+...+..++......... ........+..+++++|||+... +..+.................
T Consensus 154 ~~~i~~~~l~~~~~~~~~----~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~ 229 (699)
T 4gl2_A 154 YNNIMRHYLMQKLKNNRL----KKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLK 229 (699)
T ss_dssp SCSHHHHHHHHHHHHHHH----HC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHH
T ss_pred HHHHHHHHHHhhhccccc----ccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHh
Confidence 222223222221000000 00000001456899999999862 222222211100000000000
Q ss_pred ---ccC--CCCCCCCC--------------------CCCCCCCCCCCCcchh--hh------------------------
Q 008602 350 ---PLE--SMPATGPG--------------------NLSGPMSGSSSNSNLQ--AK------------------------ 378 (560)
Q Consensus 350 ---~~~--~~~~~~~~--------------------~~~~~~~~~~~~~~~~--~~------------------------ 378 (560)
... .+...... .+. ............ ..
T Consensus 230 ~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (699)
T 4gl2_A 230 NQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMS-PMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYN 308 (699)
T ss_dssp HHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCC-CCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHH
T ss_pred hhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccC-cchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 000 00000000 000 000000000000 00
Q ss_pred --------------------------ccc-c----------cCCc------------------ccce-EEEEechhhHHH
Q 008602 379 --------------------------QAD-Q----------SLPP------------------ALKH-YYCVTKLQHKVD 402 (560)
Q Consensus 379 --------------------------~~~-~----------~~~~------------------~~~~-~~~~~~~~~k~~ 402 (560)
... . .+.. .... .+...+.....+
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ 388 (699)
T 4gl2_A 309 EALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRN 388 (699)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 000 0 0000 0000 000011111122
Q ss_pred HHHHHHHhcC-CCeEEEEEcChhhHHHHHHHHHHC------CCceeeccCC--------CCHHHHHHHHHHhhcCCceEE
Q 008602 403 TLRRCVHALD-AQTVIAFMNNTRQLKDAVFKLEAR------GMKAAELHGD--------LGKLARSTTLKKFKNGEVRVL 467 (560)
Q Consensus 403 ~l~~~~~~~~-~~~~iif~~~~~~~~~~~~~L~~~------~~~~~~lhg~--------~~~~~r~~v~~~F~~g~~~iL 467 (560)
.|...+.... ++++||||+++..++.++..|.+. |+++..+||+ |++.+|.+++++|++|+++||
T Consensus 389 ~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VL 468 (699)
T 4gl2_A 389 TIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLL 468 (699)
T ss_dssp HHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCS
T ss_pred HHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEE
Confidence 2222233334 799999999999999999999987 8999999999 999999999999999999999
Q ss_pred EEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCc
Q 008602 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP 520 (560)
Q Consensus 468 vaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~ 520 (560)
|||+++++|||+|+|++||+||+|+|+..|+||+||+||.| +.+++++...
T Consensus 469 VaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 469 IATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp EEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred EEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 99999999999999999999999999999999999987765 3444444433
No 37
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.4e-41 Score=356.40 Aligned_cols=399 Identities=14% Similarity=0.112 Sum_probs=237.0
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 128 EGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 128 ~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.|. .|+|+|..+++.+++|+ +..++||+|||++|++|++... ..|++++|++||++||.|+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~----------------l~g~~vlVltPTreLA~Q~ 131 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNA----------------LTGKGVHVVTVNDYLAQRD 131 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHH----------------TTSSCCEEEESSHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHH----------------HcCCcEEEEcCCHHHHHHH
Confidence 476 89999999999999997 9999999999999999998655 2356799999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcCC------ccCCCeeEEEEechhhhh
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAGK------LHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~~------~~~~~l~llIiDE~h~l~ 280 (560)
++++..++...+. .+++++||.+.... .+.. .++|+||||++| .+++..+. ..++++.++|+||||+|+
T Consensus 132 ~e~~~~l~~~lgl-~v~~i~GG~~~~~r--~~~~-~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 132 AENNRPLFEFLGL-TVGINLPGMPAPAK--REAY-AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp HHHHHHHHHHTTC-CEEECCTTCCHHHH--HHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred HHHHHHHHHhcCC-eEEEEeCCCCHHHH--HHhc-CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 9999998766544 47889999876433 2322 468999999999 67776553 567899999999999998
Q ss_pred -cc---------------chHHHHHHHHHHhccCCCCC---CCCchhhhhhccCceEE----------------------
Q 008602 281 -SF---------------NFREAMHRIVEHVGRRSGAN---PREPKSALAMRAERQTI---------------------- 319 (560)
Q Consensus 281 -~~---------------~~~~~l~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~l---------------------- 319 (560)
+. ++...+..++..++...... ........-....+|++
T Consensus 208 iD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~ 287 (853)
T 2fsf_A 208 IDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEG 287 (853)
T ss_dssp TTTTTCEEEEEEC-------------------------------------------------------------------
T ss_pred HhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccccc
Confidence 43 35677788877775310000 00000000000122322
Q ss_pred --EEEeeCCh---HHHHHH--HH-cCCCCeEE-eeccccccCCCC------------------CCCCCCCCCCCCCCCCC
Q 008602 320 --MVSATVPF---SVIRAA--RS-WGHDPLLV-QAKNVIPLESMP------------------ATGPGNLSGPMSGSSSN 372 (560)
Q Consensus 320 --~~SAT~~~---~~~~~~--~~-~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 372 (560)
++|||.+. .+.... .. +..+...+ ..+....+..+. ......+..........
T Consensus 288 ~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~I 367 (853)
T 2fsf_A 288 ESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASI 367 (853)
T ss_dssp ---------------------------------------------------------------------CCCCCEEEEEE
T ss_pred ccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccccccccee
Confidence 78998653 222111 11 11111111 101000000000 00000000000000000
Q ss_pred cchh---------------------hh----cccccCCcc--c----ceEEEEechhhHHHHHHHHHHh--cCCCeEEEE
Q 008602 373 SNLQ---------------------AK----QADQSLPPA--L----KHYYCVTKLQHKVDTLRRCVHA--LDAQTVIAF 419 (560)
Q Consensus 373 ~~~~---------------------~~----~~~~~~~~~--~----~~~~~~~~~~~k~~~l~~~~~~--~~~~~~iif 419 (560)
.... .. .....+|.. . ....+......|...+.+.+.. ..+.++|||
T Consensus 368 t~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVf 447 (853)
T 2fsf_A 368 TFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVG 447 (853)
T ss_dssp EHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0000 00 000000100 0 1112344566788888887754 356899999
Q ss_pred EcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCC-----------------
Q 008602 420 MNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAEC----------------- 482 (560)
Q Consensus 420 ~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v----------------- 482 (560)
|+++..++.++..|++.|+++..+||++.+.++..+...|+.| .|+|||++++||+||+..
T Consensus 448 t~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~ 525 (853)
T 2fsf_A 448 TISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQ 525 (853)
T ss_dssp ESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSH
T ss_pred ECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHH
Confidence 9999999999999999999999999999888888888999888 699999999999999974
Q ss_pred --------------------CEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccC
Q 008602 483 --------------------DLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFT 542 (560)
Q Consensus 483 --------------------~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~ 542 (560)
.+||+++.|.|...|.||+||+||.|.+|.+++|++.+|..+-..-.+.+..-++...++
T Consensus 526 ~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~ 605 (853)
T 2fsf_A 526 IEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMK 605 (853)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCC
T ss_pred HHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCC
Confidence 599999999999999999999999999999999998877433110011123334555555
Q ss_pred CCceeeccc
Q 008602 543 EGRLVIGKE 551 (560)
Q Consensus 543 ~~~~~~~~~ 551 (560)
++..++..-
T Consensus 606 ~~~~i~~~~ 614 (853)
T 2fsf_A 606 PGEAIEHPW 614 (853)
T ss_dssp TTCCCCCHH
T ss_pred CccccchHH
Confidence 555554433
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.1e-43 Score=368.69 Aligned_cols=335 Identities=15% Similarity=0.138 Sum_probs=224.6
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+|+|+|.++++.++++++++++++||+|||++|+.++...+. ..+.++||++||++|+.||++++
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~---------------~~~~~vlvl~P~~~L~~Q~~~~~ 177 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE---------------NYEGKILIIVPTTALTTQMADDF 177 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHH---------------HCSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHh---------------CCCCeEEEEECcHHHHHHHHHHH
Confidence 899999999999999999999999999999999999988762 12348999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i 291 (560)
.++.. .+...+..+.++.....+ ..+.++|+|+||+.|.. .....+.++++|||||||++.. ..+..+
T Consensus 178 ~~~~~-~~~~~v~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~i 245 (510)
T 2oca_A 178 VDYRL-FSHAMIKKIGGGASKDDK----YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSI 245 (510)
T ss_dssp HHTTS-SCGGGEEECGGGCCTTGG----GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHH
T ss_pred HHhhc-CCccceEEEecCCccccc----cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHH
Confidence 77633 333346677777655443 34567899999997754 2335678899999999999655 334444
Q ss_pred HHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHH-HHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCC
Q 008602 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRA-ARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSS 370 (560)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (560)
+..+ .+..++++||||++...... ......++..+......... ...+........
T Consensus 246 l~~~-----------------~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~ 302 (510)
T 2oca_A 246 ISGL-----------------NNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLME------DGQVTELKINSI 302 (510)
T ss_dssp GGGC-----------------TTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------------CCEEEEE
T ss_pred HHhc-----------------ccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhh------CCcCCCceEEEE
Confidence 4433 24568999999996553221 11112223322211100000 000000000000
Q ss_pred CCcchhhhcccccCC-cccce-EEEEechhhHHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCC
Q 008602 371 SNSNLQAKQADQSLP-PALKH-YYCVTKLQHKVDTLRRCVHAL--DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGD 446 (560)
Q Consensus 371 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~k~~~l~~~~~~~--~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~ 446 (560)
. ........ .... ..... +........+...+.+++... .+++.+|++.++..++.+++.|.+.+.++..+||+
T Consensus 303 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~ 380 (510)
T 2oca_A 303 F-LRYPDEFT-TKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGE 380 (510)
T ss_dssp E-EECCHHHH-HHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSS
T ss_pred e-ecCChHHh-ccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECC
Confidence 0 00000000 0000 00000 000111122333444444442 23444444444999999999999988899999999
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEe-cCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEec
Q 008602 447 LGKLARSTTLKKFKNGEVRVLVTN-ELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICE 518 (560)
Q Consensus 447 ~~~~~r~~v~~~F~~g~~~iLvaT-~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~ 518 (560)
|++.+|.++++.|.+|+.+||||| +++++|+|+|++++||++++|+|...|.||+||+||.|+.|.++++++
T Consensus 381 ~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 381 VDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp TTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999 999999999999999999999999999999999999998774444443
No 39
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.1e-39 Score=344.10 Aligned_cols=330 Identities=15% Similarity=0.141 Sum_probs=247.6
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
..|+ .|+++|..+++.+++|+ |..++||+|||++|.+|++... ..|.+|+|++||++||.|
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~a----------------L~g~~v~VvTpTreLA~Q 167 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNA----------------LAGNGVHIVTVNDYLAKR 167 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHH----------------TTTSCEEEEESSHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHH----------------HhCCCeEEEeCCHHHHHH
Confidence 3588 99999999999999997 9999999999999999997554 224579999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcC------CccCCCeeEEEEechhhh
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAG------KLHTHGCRFLVLDEIDEL 279 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~------~~~~~~l~llIiDE~h~l 279 (560)
.++++..+....+. .+++++||.+........ .++|+||||++| .+++..+ ...++.+.++||||||+|
T Consensus 168 dae~m~~l~~~lGL-sv~~i~gg~~~~~r~~~y---~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsm 243 (922)
T 1nkt_A 168 DSEWMGRVHRFLGL-QVGVILATMTPDERRVAY---NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSI 243 (922)
T ss_dssp HHHHHHHHHHHTTC-CEEECCTTCCHHHHHHHH---HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHH
T ss_pred HHHHHHHHHhhcCC-eEEEEeCCCCHHHHHHhc---CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHH
Confidence 99999988766544 478899988754433322 468999999999 6766654 356788999999999999
Q ss_pred h-c---------------cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEE-----------------EEEeeCC
Q 008602 280 L-S---------------FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTI-----------------MVSATVP 326 (560)
Q Consensus 280 ~-~---------------~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------------~~SAT~~ 326 (560)
+ + .+|...+..++..++....+ .-....+|++ ++|||.+
T Consensus 244 LiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy--------~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~ 315 (922)
T 1nkt_A 244 LIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHY--------EVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANS 315 (922)
T ss_dssp HTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTE--------EEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTC
T ss_pred HHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccc--------eeccCcceEEecHhHHHHHHHHhCCccccCCcch
Confidence 8 3 25888899999888521000 0000233444 4555543
Q ss_pred --------------------------------------------------------------------------------
Q 008602 327 -------------------------------------------------------------------------------- 326 (560)
Q Consensus 327 -------------------------------------------------------------------------------- 326 (560)
T Consensus 316 ~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y 395 (922)
T 1nkt_A 316 PLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLY 395 (922)
T ss_dssp CHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhh
Confidence
Q ss_pred -----------hHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEe
Q 008602 327 -----------FSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVT 395 (560)
Q Consensus 327 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (560)
.+..++...|.-+.+.+.+. .| ............
T Consensus 396 ~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn--~p---------------------------------~~R~d~~d~v~~ 440 (922)
T 1nkt_A 396 DKLAGMTGTAQTEAAELHEIYKLGVVSIPTN--MP---------------------------------MIREDQSDLIYK 440 (922)
T ss_dssp SEEEEEESCCGGGHHHHHHHHCCEEEECCCS--SC---------------------------------CCCEECCCEEES
T ss_pred hhhhccccCchhHHHHHHHHhCCCeEEeCCC--CC---------------------------------cccccCCcEEEe
Confidence 33333333332221111100 00 000001112334
Q ss_pred chhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCc
Q 008602 396 KLQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS 473 (560)
Q Consensus 396 ~~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~ 473 (560)
....|...+...+.. ..+.++||||+++..++.++..|.+.|+++..+||++.+.++..+...|+.| .|+|||+++
T Consensus 441 t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmA 518 (922)
T 1nkt_A 441 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMA 518 (922)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTC
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchh
Confidence 556677777777654 3567899999999999999999999999999999998888887888888887 699999999
Q ss_pred ccCCCCCCC----------------------------------------------------CEEEEccCCCChhhhHhhh
Q 008602 474 ARGLDVAEC----------------------------------------------------DLVVNLDLPTDSIHYAHRA 501 (560)
Q Consensus 474 ~~Gidip~v----------------------------------------------------~~VI~~~~p~s~~~y~Qr~ 501 (560)
+||+||+.. .+||+++.|.|...|.||+
T Consensus 519 gRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~ 598 (922)
T 1nkt_A 519 GRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLR 598 (922)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHH
T ss_pred hcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHh
Confidence 999999975 4999999999999999999
Q ss_pred ccccCCCCcceEEEEecCccHHH
Q 008602 502 GRTGRLGRRGTVVSICEEPEVFV 524 (560)
Q Consensus 502 GR~gR~g~~g~~~~l~~~~e~~~ 524 (560)
||+||.|.+|.+++|++.+|..+
T Consensus 599 GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 599 GRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp HTSSGGGCCEEEEEEEETTSHHH
T ss_pred cccccCCCCeeEEEEechhHHHH
Confidence 99999999999999998877533
No 40
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.7e-40 Score=359.74 Aligned_cols=337 Identities=20% Similarity=0.296 Sum_probs=250.1
Q ss_pred CcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhc-CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCC
Q 008602 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184 (560)
Q Consensus 106 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~-~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~ 184 (560)
+.+...|.++++++.+.+.+..++ ..|++.|+.+|+.++. +++++++||||||||++ +|++.....
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~---------- 134 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDE---------- 134 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHH----------
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhc----------
Confidence 345567999999999999999988 5899999999987775 56799999999999994 444321100
Q ss_pred CCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCcc
Q 008602 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLH 264 (560)
Q Consensus 185 ~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~ 264 (560)
.....+.+++|++|+++|+.|+++.+...++......++........ .....+|+|+||+.+.+.+... ..
T Consensus 135 -~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~-------~~~~~~I~v~T~G~l~r~l~~~-~~ 205 (773)
T 2xau_A 135 -MPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK-------TSNKTILKYMTDGMLLREAMED-HD 205 (773)
T ss_dssp -CGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE-------CCTTCSEEEEEHHHHHHHHHHS-TT
T ss_pred -cccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc-------cCCCCCEEEECHHHHHHHHhhC-cc
Confidence 00122567999999999999999999887654444434432222111 1235679999999999876654 45
Q ss_pred CCCeeEEEEechhh-hhccch-HHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeE
Q 008602 265 THGCRFLVLDEIDE-LLSFNF-REAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342 (560)
Q Consensus 265 ~~~l~llIiDE~h~-l~~~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~ 342 (560)
+.++++|||||+|. +++.++ ...++.+... +++.++++||||++. ..+...+...+.+
T Consensus 206 l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~------------------~~~~~iIl~SAT~~~--~~l~~~~~~~~vi 265 (773)
T 2xau_A 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKR------------------RPDLKIIIMSATLDA--EKFQRYFNDAPLL 265 (773)
T ss_dssp CTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH------------------CTTCEEEEEESCSCC--HHHHHHTTSCCEE
T ss_pred ccCCCEEEecCccccccchHHHHHHHHHHHHh------------------CCCceEEEEeccccH--HHHHHHhcCCCcc
Confidence 88999999999994 666443 3334444432 256799999999954 4555555555554
Q ss_pred EeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEec----hhhHHHHHHHHHHhcCCCeEEE
Q 008602 343 VQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTK----LQHKVDTLRRCVHALDAQTVIA 418 (560)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~k~~~l~~~~~~~~~~~~ii 418 (560)
...+...++.. ++.... .......+..+.....++++||
T Consensus 266 ~v~gr~~pv~~-------------------------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLV 308 (773)
T 2xau_A 266 AVPGRTYPVEL-------------------------------------YYTPEFQRDYLDSAIRTVLQIHATEEAGDILL 308 (773)
T ss_dssp ECCCCCCCEEE-------------------------------------ECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred cccCcccceEE-------------------------------------EEecCCchhHHHHHHHHHHHHHHhcCCCCEEE
Confidence 44333222211 111111 1122333444444456899999
Q ss_pred EEcChhhHHHHHHHHHH-----------CCCceeeccCCCCHHHHHHHHHHhh-----cCCceEEEEecCcccCCCCCCC
Q 008602 419 FMNNTRQLKDAVFKLEA-----------RGMKAAELHGDLGKLARSTTLKKFK-----NGEVRVLVTNELSARGLDVAEC 482 (560)
Q Consensus 419 f~~~~~~~~~~~~~L~~-----------~~~~~~~lhg~~~~~~r~~v~~~F~-----~g~~~iLvaT~~~~~Gidip~v 482 (560)
||+++.+++.++..|.+ .++.+..+||+|++.+|.++++.|. +|+++|||||+++++|||||++
T Consensus 309 F~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v 388 (773)
T 2xau_A 309 FLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGI 388 (773)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTE
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCe
Confidence 99999999999999985 4788999999999999999999999 9999999999999999999999
Q ss_pred CEEEEccC------------------CCChhhhHhhhccccCCCCcceEEEEecCccH
Q 008602 483 DLVVNLDL------------------PTDSIHYAHRAGRTGRLGRRGTVVSICEEPEV 522 (560)
Q Consensus 483 ~~VI~~~~------------------p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~ 522 (560)
++||+++. |.|.++|+||+|||||. ..|.||.|+++.+.
T Consensus 389 ~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 389 VYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999877 88999999999999999 78999999987654
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.8e-40 Score=380.46 Aligned_cols=348 Identities=18% Similarity=0.244 Sum_probs=254.2
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHhhhhc-CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEE
Q 008602 117 LPPLLLERLEREGFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAV 195 (560)
Q Consensus 117 l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~-~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vl 195 (560)
+.+...+.+...+|..++|+|.++++.++. +++++++||||||||++|.+|++..+.. ..+.+++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~--------------~~~~kav 976 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ--------------SSEGRCV 976 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH--------------CTTCCEE
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh--------------CCCCEEE
Confidence 445666777777899999999999999976 5789999999999999999999998832 2356799
Q ss_pred EEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC--ccCCCeeEEEE
Q 008602 196 IVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK--LHTHGCRFLVL 273 (560)
Q Consensus 196 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~--~~~~~l~llIi 273 (560)
|++|+++||.|.++++.+.++...+..+..++|+..... ..+. .++|+||||++|..++.... ..++++++||+
T Consensus 977 yi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~~~~--~~~IiV~TPEkld~llr~~~~~~~l~~v~lvVi 1052 (1724)
T 4f92_B 977 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--KLLG--KGNIIISTPEKWDILSRRWKQRKNVQNINLFVV 1052 (1724)
T ss_dssp EECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--HHHH--HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEE
T ss_pred EEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch--hhcC--CCCEEEECHHHHHHHHhCcccccccceeeEEEe
Confidence 999999999999999999887654555777777644322 2222 35799999999988776543 34678999999
Q ss_pred echhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCe--EEeecccccc
Q 008602 274 DEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPL--LVQAKNVIPL 351 (560)
Q Consensus 274 DE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 351 (560)
||+|.+.+ ..+..++.++.++.... .....+.|++++|||++ +...++.+....+. ........|.
T Consensus 1053 DE~H~l~d-~rg~~le~il~rl~~i~----------~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~~~~~~~RPv 1120 (1724)
T 4f92_B 1053 DEVHLIGG-ENGPVLEVICSRMRYIS----------SQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTFNFHPNVRPV 1120 (1724)
T ss_dssp CCGGGGGS-TTHHHHHHHHHHHHHHH----------HTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEEECCGGGCSS
T ss_pred echhhcCC-CCCccHHHHHHHHHHHH----------hhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeEEeCCCCCCC
Confidence 99998655 57777777776654211 11235789999999997 45666665543321 1111111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhh-------HHHHHHHHHH-hcCCCeEEEEEcCh
Q 008602 352 ESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQH-------KVDTLRRCVH-ALDAQTVIAFMNNT 423 (560)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~~~l~~~~~-~~~~~~~iif~~~~ 423 (560)
.+..++....... ....+...+. ...+++++|||+++
T Consensus 1121 -----------------------------------pL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR 1165 (1724)
T 4f92_B 1121 -----------------------------------PLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSR 1165 (1724)
T ss_dssp -----------------------------------CEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSH
T ss_pred -----------------------------------CeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCH
Confidence 1111111111111 1112222332 34678999999999
Q ss_pred hhHHHHHHHHHHC----------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEE
Q 008602 424 RQLKDAVFKLEAR----------------------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVT 469 (560)
Q Consensus 424 ~~~~~~~~~L~~~----------------------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLva 469 (560)
..++.++..|... ...++.+||+|++.+|..+++.|++|.++||||
T Consensus 1166 ~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLva 1245 (1724)
T 4f92_B 1166 KQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVA 1245 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEE
T ss_pred HHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 9998887665321 234789999999999999999999999999999
Q ss_pred ecCcccCCCCCCCCEEEE----cc------CCCChhhhHhhhccccCCCC--cceEEEEecCccHHHHHHHH
Q 008602 470 NELSARGLDVAECDLVVN----LD------LPTDSIHYAHRAGRTGRLGR--RGTVVSICEEPEVFVVKKMQ 529 (560)
Q Consensus 470 T~~~~~Gidip~v~~VI~----~~------~p~s~~~y~Qr~GR~gR~g~--~g~~~~l~~~~e~~~~~~l~ 529 (560)
|+++++|||+|+..+||. || .|.+..+|.||+|||||.|. .|.|++++.+.+...++.+.
T Consensus 1246 T~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1246 SRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT
T ss_pred ChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHh
Confidence 999999999999988882 33 35789999999999999986 79999999988877765553
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=8.5e-42 Score=362.61 Aligned_cols=315 Identities=15% Similarity=0.139 Sum_probs=229.8
Q ss_pred CCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeE
Q 008602 115 LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEA 194 (560)
Q Consensus 115 ~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 194 (560)
+++++.+.+.+... ...++|+|+.+++.++++++++++++||||||++|++|++..+. ..+.++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~---------------~~~~~v 218 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL---------------KRRLRT 218 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHH---------------HTTCCE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHH---------------hCCCeE
Confidence 44566655544442 36789998889999999999999999999999999999998762 235789
Q ss_pred EEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEe
Q 008602 195 VIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLD 274 (560)
Q Consensus 195 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiD 274 (560)
||++||++||.|+++.+... .+.. .+.. .. ........+.++|.+.+.+.+... ..++++++||||
T Consensus 219 Lvl~PtreLa~Qi~~~l~~~-------~v~~-~~~~-l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViD 284 (618)
T 2whx_A 219 LILAPTRVVAAEMEEALRGL-------PIRY-QTPA-VK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMD 284 (618)
T ss_dssp EEEESSHHHHHHHHHHTTTS-------CEEE-CCTT-SS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEE
T ss_pred EEEcChHHHHHHHHHHhcCC-------ceeE-eccc-ce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEE
Confidence 99999999999999887521 1221 1111 00 011112247788988887755544 457889999999
Q ss_pred chhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCC
Q 008602 275 EIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESM 354 (560)
Q Consensus 275 E~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (560)
|||++ +.++...+..+...+. ++++|+++||||++..+..+.. .++..+......
T Consensus 285 Eah~~-~~~~~~~~~~i~~~l~----------------~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~----- 339 (618)
T 2whx_A 285 EAHFT-DPCSVAARGYISTRVE----------------MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI----- 339 (618)
T ss_dssp STTCC-SHHHHHHHHHHHHHHH----------------HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-----
T ss_pred CCCCC-CccHHHHHHHHHHHhc----------------ccCccEEEEECCCchhhhhhhc---cCCceeeecccC-----
Confidence 99996 7778878887777653 2578999999999765332111 112111111000
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHH
Q 008602 355 PATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLE 434 (560)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~ 434 (560)
+.. .... +...+.. .++++||||+++++++.++..|+
T Consensus 340 ------------------------------~~~--------~~~~----ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~ 376 (618)
T 2whx_A 340 ------------------------------PER--------SWNT----GFDWITD-YQGKTVWFVPSIKAGNDIANCLR 376 (618)
T ss_dssp ------------------------------CSS--------CCSS----SCHHHHH-CCSCEEEECSSHHHHHHHHHHHH
T ss_pred ------------------------------CHH--------HHHH----HHHHHHh-CCCCEEEEECChhHHHHHHHHHH
Confidence 000 0000 0111222 36799999999999999999999
Q ss_pred HCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEE--------------------EEccCCCCh
Q 008602 435 ARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLV--------------------VNLDLPTDS 494 (560)
Q Consensus 435 ~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~V--------------------I~~~~p~s~ 494 (560)
+.++++..+||+ +|.++++.|++|+.+|||||+++++|||+| +++| |+|+.|.+.
T Consensus 377 ~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~ 451 (618)
T 2whx_A 377 KSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTP 451 (618)
T ss_dssp HTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCH
T ss_pred HcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCH
Confidence 999999999985 688899999999999999999999999998 9888 778889999
Q ss_pred hhhHhhhccccCCCC-cceEEEEec---CccHHHHHHHHHHh
Q 008602 495 IHYAHRAGRTGRLGR-RGTVVSICE---EPEVFVVKKMQKQL 532 (560)
Q Consensus 495 ~~y~Qr~GR~gR~g~-~g~~~~l~~---~~e~~~~~~l~~~l 532 (560)
++|+||+||+||.|. +|.||+|++ +.|...+..+++.+
T Consensus 452 ~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 452 ASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp HHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred HHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 999999999999964 899999997 77877788887764
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=9.5e-41 Score=344.71 Aligned_cols=289 Identities=16% Similarity=0.188 Sum_probs=212.0
Q ss_pred CCCCChHHHHHHHhhhhcCCcE-EEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILKNHDV-VIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~~~~~-li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
|+.+|+|+|+ +++.+++++++ +++||||||||++|++|++..+. ..+.+++|++||++||.|+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~---------------~~~~~~lvl~Ptr~La~Q~ 64 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL---------------LRRLRTLILAPTRVVAAEM 64 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHH---------------HTTCCEEEEESSHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHH---------------hcCCcEEEECCCHHHHHHH
Confidence 5778999985 79999998887 99999999999999999987652 3457899999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~ 287 (560)
++.+.. . .+......... .......|.++|++.+.+.+... ..++++++|||||||++ +..+...
T Consensus 65 ~~~l~g----~---~v~~~~~~~~~------~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~ 129 (451)
T 2jlq_A 65 EEALRG----L---PIRYQTPAVKS------DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAA 129 (451)
T ss_dssp HHHTTT----S---CEEECCTTCSC------CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHH
T ss_pred HHHhcC----c---eeeeeeccccc------cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHH
Confidence 988742 1 12221111110 01223469999999998766544 55789999999999985 4444443
Q ss_pred HHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCC
Q 008602 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMS 367 (560)
Q Consensus 288 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (560)
+..+..... .++.|+++||||++.....+ +..++..+......+.
T Consensus 130 ~~~~~~~~~----------------~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~---------------- 174 (451)
T 2jlq_A 130 RGYISTRVE----------------MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIPE---------------- 174 (451)
T ss_dssp HHHHHHHHH----------------TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCCS----------------
T ss_pred HHHHHHhhc----------------CCCceEEEEccCCCccchhh---hcCCCceEecCccCCc----------------
Confidence 333322221 35789999999997643221 2222222221111000
Q ss_pred CCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCC
Q 008602 368 GSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447 (560)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~ 447 (560)
..+ .... ..+.. ..+++||||+++.+++.++..|++.++.+..+||++
T Consensus 175 ---------------------~~~------~~~~----~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~ 222 (451)
T 2jlq_A 175 ---------------------RSW------NTGF----DWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT 222 (451)
T ss_dssp ---------------------SCC------SSSC----HHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT
T ss_pred ---------------------hhh------HHHH----HHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH
Confidence 000 0001 11222 267999999999999999999999999999999975
Q ss_pred CHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEcc--------------------CCCChhhhHhhhccccCC
Q 008602 448 GKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLD--------------------LPTDSIHYAHRAGRTGRL 507 (560)
Q Consensus 448 ~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~--------------------~p~s~~~y~Qr~GR~gR~ 507 (560)
+.++++.|++|+.+|||||+++++|+|+|+ ++||+|| .|.|..+|+||+||+||.
T Consensus 223 ----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~ 297 (451)
T 2jlq_A 223 ----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRN 297 (451)
T ss_dssp ----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred ----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCC
Confidence 457999999999999999999999999999 9999999 999999999999999999
Q ss_pred CC-cceEEEEecCc
Q 008602 508 GR-RGTVVSICEEP 520 (560)
Q Consensus 508 g~-~g~~~~l~~~~ 520 (560)
|. .|.|++++..+
T Consensus 298 g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 298 PAQEDDQYVFSGDP 311 (451)
T ss_dssp TTCCCEEEEECSCC
T ss_pred CCCCccEEEEeCCc
Confidence 98 89999988543
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1e-39 Score=379.04 Aligned_cols=345 Identities=21% Similarity=0.307 Sum_probs=249.7
Q ss_pred CCCCChHHHHHHHhhhhc-CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 129 GFNVPTEVQSAAIPSILK-NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i~~-~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
||+.++++|.++++.++. ++++++|||||||||++|.++++..+....... ......+.++||++|+++||.|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~-----~~~~~~~~k~lyiaP~kALa~e~ 150 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD-----GTINVDDFKIIYIAPMRSLVQEM 150 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT-----SSCCTTSCEEEEECSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc-----ccccCCCCEEEEECCHHHHHHHH
Confidence 788999999999998775 789999999999999999999999884322111 11124578899999999999999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC--ccCCCeeEEEEechhhhhccchH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK--LHTHGCRFLVLDEIDELLSFNFR 285 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~--~~~~~l~llIiDE~h~l~~~~~~ 285 (560)
++.|.+.+...+.. +..++|+....... ...++|+||||+++..++.... ..++++++|||||+|.+ +.+.+
T Consensus 151 ~~~l~~~~~~~gi~-V~~~tGd~~~~~~~----~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l-~d~RG 224 (1724)
T 4f92_B 151 VGSFGKRLATYGIT-VAELTGDHQLCKEE----ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLL-HDDRG 224 (1724)
T ss_dssp HHHHHHHHTTTTCC-EEECCSSCSSCCTT----GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGG-GSTTH
T ss_pred HHHHHHHHhhCCCE-EEEEECCCCCCccc----cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhc-CCccH
Confidence 99999998876554 77788876654321 1347899999999977765543 23688999999999965 44777
Q ss_pred HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCC---eEEeeccccccCCCCCCCCCCC
Q 008602 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP---LLVQAKNVIPLESMPATGPGNL 362 (560)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 362 (560)
..++.++.++.+. .....+..|+|++|||++ +...++.+...++ ..+......|.
T Consensus 225 ~~lE~~l~rl~~~----------~~~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~~~~RPv----------- 282 (1724)
T 4f92_B 225 PVLEALVARAIRN----------IEMTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFDNSFRPV----------- 282 (1724)
T ss_dssp HHHHHHHHHHHHH----------HHHHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECCGGGCSS-----------
T ss_pred HHHHHHHHHHHHH----------HHhCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEECCCCccC-----------
Confidence 7777777654321 112236789999999996 4556666543332 11111111111
Q ss_pred CCCCCCCCCCcchhhhcccccCCcccceEEE-Ee--chhhHH----HHHHHHHHh-cCCCeEEEEEcChhhHHHHHHHHH
Q 008602 363 SGPMSGSSSNSNLQAKQADQSLPPALKHYYC-VT--KLQHKV----DTLRRCVHA-LDAQTVIAFMNNTRQLKDAVFKLE 434 (560)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~k~----~~l~~~~~~-~~~~~~iif~~~~~~~~~~~~~L~ 434 (560)
.+...+. .. ...... ..+...+.. ..++++||||++++.++.++..|.
T Consensus 283 ------------------------pL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~ 338 (1724)
T 4f92_B 283 ------------------------PLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIR 338 (1724)
T ss_dssp ------------------------CEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHH
T ss_pred ------------------------ccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHH
Confidence 0111111 00 011111 122222222 456899999999999999888775
Q ss_pred HC-------------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCC
Q 008602 435 AR-------------------------------------GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGL 477 (560)
Q Consensus 435 ~~-------------------------------------~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gi 477 (560)
+. ...++.+||+|++.+|..+++.|++|.++|||||++++.||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GV 418 (1724)
T 4f92_B 339 DMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGV 418 (1724)
T ss_dssp HHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHS
T ss_pred HHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhC
Confidence 31 13478899999999999999999999999999999999999
Q ss_pred CCCCCCEEEE----ccC------CCChhhhHhhhccccCCC--CcceEEEEecCccHHHHHHHHH
Q 008602 478 DVAECDLVVN----LDL------PTDSIHYAHRAGRTGRLG--RRGTVVSICEEPEVFVVKKMQK 530 (560)
Q Consensus 478 dip~v~~VI~----~~~------p~s~~~y~Qr~GR~gR~g--~~g~~~~l~~~~e~~~~~~l~~ 530 (560)
|+|+.++||. ||+ |.+..+|.||+|||||.| ..|.+++++++.+...+..+..
T Consensus 419 NlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 419 NLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLN 483 (1724)
T ss_dssp CCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTT
T ss_pred CCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHc
Confidence 9999999984 554 458999999999999986 4799999999887666655543
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=7.4e-40 Score=342.22 Aligned_cols=321 Identities=17% Similarity=0.176 Sum_probs=222.2
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.|+|+|.++++.+++++++++++|||+|||++|+.++... +.++||+||+++|+.||++++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-------------------~~~~Lvl~P~~~L~~Q~~~~~ 153 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------------STPTLIVVPTLALAEQWKERL 153 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-------------------CSCEEEEESSHHHHHHHHHHG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-------------------CCCEEEEECCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999988764 245999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i 291 (560)
.+ ++ ...+..+.|+... ..+|+|+||+.+...... ...++++|||||||++.+..+.. +
T Consensus 154 ~~-~~---~~~v~~~~g~~~~----------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~ 212 (472)
T 2fwr_A 154 GI-FG---EEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----I 212 (472)
T ss_dssp GG-GC---GGGEEEBSSSCBC----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----H
T ss_pred Hh-CC---CcceEEECCCcCC----------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----H
Confidence 88 42 2225566665432 357999999999774431 12458999999999988777654 3
Q ss_pred HHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh-------------------HHHHHHHHcCCCCeEEeecccc-cc
Q 008602 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF-------------------SVIRAARSWGHDPLLVQAKNVI-PL 351 (560)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~-------------------~~~~~~~~~~~~~~~~~~~~~~-~~ 351 (560)
+..+ +..+++++|||+.. ....+...++..+......... +.
T Consensus 213 ~~~~------------------~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 274 (472)
T 2fwr_A 213 AQMS------------------IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAED 274 (472)
T ss_dssp HHTC------------------CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHH
T ss_pred HHhc------------------CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHH
Confidence 3332 45689999999972 1222222222222211110000 00
Q ss_pred -----C-------------CCCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCC
Q 008602 352 -----E-------------SMPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDA 413 (560)
Q Consensus 352 -----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 413 (560)
. .........+.......... ......+...............|...+.+++....+
T Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 349 (472)
T 2fwr_A 275 ERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYD-----ERAYEALRAWEEARRIAFNSKNKIRKLREILERHRK 349 (472)
T ss_dssp HHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCS-----SSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccC-----HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCC
Confidence 0 00000000000000000000 000000000000000112344577788888888788
Q ss_pred CeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccCCCC
Q 008602 414 QTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTD 493 (560)
Q Consensus 414 ~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~p~s 493 (560)
+++||||++...++.++..| .+..+||+++..+|.++++.|++|+++|||||+++++|+|+|++++||++++|+|
T Consensus 350 ~k~lvF~~~~~~~~~l~~~l-----~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s 424 (472)
T 2fwr_A 350 DKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGS 424 (472)
T ss_dssp SCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSC
T ss_pred CcEEEEECCHHHHHHHHHHh-----CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCC
Confidence 99999999999999999887 3678999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhccccCCCCc---ceEEEEecCc
Q 008602 494 SIHYAHRAGRTGRLGRR---GTVVSICEEP 520 (560)
Q Consensus 494 ~~~y~Qr~GR~gR~g~~---g~~~~l~~~~ 520 (560)
+..|.||+||+||.|+. ..+|.+++..
T Consensus 425 ~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 425 AREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999999853 3456666644
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.2e-41 Score=346.57 Aligned_cols=280 Identities=18% Similarity=0.216 Sum_probs=193.4
Q ss_pred hhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCce
Q 008602 143 SILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKA 222 (560)
Q Consensus 143 ~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~ 222 (560)
.++++++++++||||||||++|++|++..+. ..+.+++|++||++||.|+++.+..+ .
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~---------------~~~~~~lil~Ptr~La~Q~~~~l~~~----~--- 61 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA---------------RRRLRTLVLAPTRVVLSEMKEAFHGL----D--- 61 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH---------------HTTCCEEEEESSHHHHHHHHHHTTTS----C---
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH---------------hcCCeEEEEcchHHHHHHHHHHHhcC----C---
Confidence 5678999999999999999999999998662 34578999999999999999888632 1
Q ss_pred EEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHH--------HcCCccCCCeeEEEEechhhhhccchHHHHHHHHHH
Q 008602 223 VQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEIS--------AAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEH 294 (560)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l--------~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~ 294 (560)
+....+.. -.++||+.+.+++ ......++++++|||||+|++ +.++...+..+...
T Consensus 62 v~~~~~~~---------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~ 125 (440)
T 1yks_A 62 VKFHTQAF---------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHR 125 (440)
T ss_dssp EEEESSCC---------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHH
T ss_pred eEEecccc---------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHH
Confidence 22111110 0366665543211 122345789999999999996 44444333333332
Q ss_pred hccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcc
Q 008602 295 VGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSN 374 (560)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (560)
.. +...|+++||||+++.+..+... ..+.....
T Consensus 126 ~~----------------~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~----------------------------- 158 (440)
T 1yks_A 126 AR----------------ANESATILMTATPPGTSDEFPHS--NGEIEDVQ----------------------------- 158 (440)
T ss_dssp HH----------------TTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE-----------------------------
T ss_pred hc----------------cCCceEEEEeCCCCchhhhhhhc--CCCeeEee-----------------------------
Confidence 21 25689999999997654322111 00100000
Q ss_pred hhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHH
Q 008602 375 LQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 454 (560)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~ 454 (560)
...+. ........ .+.. .++++||||++++.++.++..|++.++++..+|| ++|..
T Consensus 159 -------~~~~~--------~~~~~~~~---~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~ 214 (440)
T 1yks_A 159 -------TDIPS--------EPWNTGHD---WILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFER 214 (440)
T ss_dssp -------CCCCS--------SCCSSSCH---HHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC-
T ss_pred -------eccCh--------HHHHHHHH---HHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHH
Confidence 00000 00000111 1111 2689999999999999999999999999999999 46889
Q ss_pred HHHHhhcCCceEEEEecCcccCCCCCCCCEEEE-------------------ccCCCChhhhHhhhccccCC-CCcceEE
Q 008602 455 TLKKFKNGEVRVLVTNELSARGLDVAECDLVVN-------------------LDLPTDSIHYAHRAGRTGRL-GRRGTVV 514 (560)
Q Consensus 455 v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~-------------------~~~p~s~~~y~Qr~GR~gR~-g~~g~~~ 514 (560)
+++.|++|+++|||||+++++|+|+| +++||+ |+.|.+.++|+||+||+||. |.+|.||
T Consensus 215 ~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~ 293 (440)
T 1yks_A 215 EYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSY 293 (440)
T ss_dssp -------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred HHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEE
Confidence 99999999999999999999999999 999996 89999999999999999997 6899999
Q ss_pred EEe---cCccHHHHHHHHHHh
Q 008602 515 SIC---EEPEVFVVKKMQKQL 532 (560)
Q Consensus 515 ~l~---~~~e~~~~~~l~~~l 532 (560)
+|+ ++.+...+..+++.+
T Consensus 294 ~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 294 YYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EECSCCCCCCTTBHHHHHHHH
T ss_pred EEeccCChhhhhhhhhhhHHh
Confidence 996 677777777777664
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.2e-39 Score=342.34 Aligned_cols=298 Identities=17% Similarity=0.188 Sum_probs=221.4
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+++++|..+++.+.++++++++|+||||||++|.++++.. +.+++|++|||+||.|+++.+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-------------------g~~vLVl~PTReLA~Qia~~l 277 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-------------------GYKVLVLNPSVAATLGFGAYM 277 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-------------------TCCEEEEESCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-------------------CCeEEEEcchHHHHHHHHHHH
Confidence 5667787788888889999999999999999999988752 346999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i 291 (560)
.+.++.. +...+|+.. ..+.++|+|+||++| +....+.++++++||||||| +++.++...+..+
T Consensus 278 ~~~~g~~----vg~~vG~~~--------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~I 341 (666)
T 3o8b_A 278 SKAHGID----PNIRTGVRT--------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTV 341 (666)
T ss_dssp HHHHSCC----CEEECSSCE--------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHH
T ss_pred HHHhCCC----eeEEECcEe--------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHH
Confidence 8877543 344555533 245678999999998 45667778899999999997 5888888888888
Q ss_pred HHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCC
Q 008602 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSS 371 (560)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (560)
++.++.. ....++++|||++..+. ...+.....
T Consensus 342 l~~l~~~---------------~~~llil~SAT~~~~i~------~~~p~i~~v-------------------------- 374 (666)
T 3o8b_A 342 LDQAETA---------------GARLVVLATATPPGSVT------VPHPNIEEV-------------------------- 374 (666)
T ss_dssp HHHTTTT---------------TCSEEEEEESSCTTCCC------CCCTTEEEE--------------------------
T ss_pred HHhhhhc---------------CCceEEEECCCCCcccc------cCCcceEEE--------------------------
Confidence 8877421 12237888999975210 001100000
Q ss_pred CcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHH
Q 008602 372 NSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLA 451 (560)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~ 451 (560)
..........+..... +....++++||||+++++++.+++.|++.++.+..+||+|++++
T Consensus 375 ---------~~~~~~~i~~~~~~~~-----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e 434 (666)
T 3o8b_A 375 ---------ALSNTGEIPFYGKAIP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV 434 (666)
T ss_dssp ---------ECBSCSSEEETTEEEC-----------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG
T ss_pred ---------eecccchhHHHHhhhh-----------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH
Confidence 0000000000000000 11235789999999999999999999999999999999999875
Q ss_pred HHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEE----------Ecc-----------CCCChhhhHhhhccccCCCCc
Q 008602 452 RSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVV----------NLD-----------LPTDSIHYAHRAGRTGRLGRR 510 (560)
Q Consensus 452 r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI----------~~~-----------~p~s~~~y~Qr~GR~gR~g~~ 510 (560)
|.++..+|||||+++++|||+| +++|| ||| .|.+.++|+||+||+|| |++
T Consensus 435 -------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~ 505 (666)
T 3o8b_A 435 -------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRR 505 (666)
T ss_dssp -------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSC
T ss_pred -------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCC
Confidence 4567779999999999999997 99998 677 89999999999999999 899
Q ss_pred ceEEEEecCccHHH--H--HHHHHHhCCCcccccc
Q 008602 511 GTVVSICEEPEVFV--V--KKMQKQLAVPIQACEF 541 (560)
Q Consensus 511 g~~~~l~~~~e~~~--~--~~l~~~l~~~~~~~~~ 541 (560)
|. |.|+++.|... + ..+++..+.+++...+
T Consensus 506 G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l 539 (666)
T 3o8b_A 506 GI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYEL 539 (666)
T ss_dssp EE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCC
T ss_pred CE-EEEEecchhhcccccHHHHHHHhcCCcccccC
Confidence 99 99998877554 3 5555555544444444
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.9e-40 Score=354.18 Aligned_cols=299 Identities=18% Similarity=0.247 Sum_probs=209.9
Q ss_pred CChHHHH-----HHHhhhh------cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccC
Q 008602 132 VPTEVQS-----AAIPSIL------KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPS 200 (560)
Q Consensus 132 ~~~~~Q~-----~ai~~i~------~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt 200 (560)
.|+++|+ .+|+.++ ++++++++||||||||++|++|++..+. ..+.++||++||
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~---------------~~~~~~lilaPT 279 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAI---------------QKRLRTAVLAPT 279 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHH---------------HTTCCEEEEESS
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH---------------hCCCcEEEEccH
Confidence 7999999 9999988 8999999999999999999999998752 345789999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhh
Q 008602 201 RELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELL 280 (560)
Q Consensus 201 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~ 280 (560)
++||.|+++.+..+ . +....+... .......-+-+.+.+.+.+.+... ..++++++|||||+|++
T Consensus 280 r~La~Q~~~~l~~~----~---i~~~~~~l~------~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~- 344 (673)
T 2wv9_A 280 RVVAAEMAEALRGL----P---VRYLTPAVQ------REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT- 344 (673)
T ss_dssp HHHHHHHHHHTTTS----C---CEECCC---------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-
T ss_pred HHHHHHHHHHHhcC----C---eeeeccccc------ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-
Confidence 99999999888643 1 111111000 000111124455556565544443 56889999999999996
Q ss_pred ccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCC
Q 008602 281 SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPG 360 (560)
Q Consensus 281 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (560)
+..+...+..+...+. +...|+++||||+++.+..+... ..|.....
T Consensus 345 ~~~~~~~~~~l~~~~~----------------~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~--------------- 391 (673)
T 2wv9_A 345 DPASIAARGYIATRVE----------------AGEAAAIFMTATPPGTSDPFPDT--NSPVHDVS--------------- 391 (673)
T ss_dssp CHHHHHHHHHHHHHHH----------------TTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE---------------
T ss_pred CccHHHHHHHHHHhcc----------------ccCCcEEEEcCCCChhhhhhccc--CCceEEEe---------------
Confidence 4333333333333221 25679999999997542211100 00100000
Q ss_pred CCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCce
Q 008602 361 NLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKA 440 (560)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~ 440 (560)
...+. ...... +..+.. .++++||||+++++++.++..|++.++++
T Consensus 392 ---------------------~~~~~--------~~~~~~---l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v 437 (673)
T 2wv9_A 392 ---------------------SEIPD--------RAWSSG---FEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRV 437 (673)
T ss_dssp ---------------------CCCCS--------SCCSSC---CHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCE
T ss_pred ---------------------eecCH--------HHHHHH---HHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeE
Confidence 00000 000001 111111 47899999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEE--------------------ccCCCChhhhHhh
Q 008602 441 AELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVN--------------------LDLPTDSIHYAHR 500 (560)
Q Consensus 441 ~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~--------------------~~~p~s~~~y~Qr 500 (560)
..+||. +|.++++.|++|+++|||||+++++|||+| +++||+ |+.|.+.++|+||
T Consensus 438 ~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr 512 (673)
T 2wv9_A 438 IQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQR 512 (673)
T ss_dssp EEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHH
T ss_pred EEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHH
Confidence 999994 799999999999999999999999999999 999998 6789999999999
Q ss_pred hccccCC-CCcceEEEEe---cCccHHHHHHHHHHh
Q 008602 501 AGRTGRL-GRRGTVVSIC---EEPEVFVVKKMQKQL 532 (560)
Q Consensus 501 ~GR~gR~-g~~g~~~~l~---~~~e~~~~~~l~~~l 532 (560)
+||+||. |++|.||+|+ ++.|...+..++..+
T Consensus 513 ~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 513 RGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp HTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred hhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 9999999 7899999996 567766666666554
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.8e-39 Score=332.46 Aligned_cols=280 Identities=19% Similarity=0.224 Sum_probs=192.9
Q ss_pred HHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCC
Q 008602 139 AAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPS 218 (560)
Q Consensus 139 ~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~ 218 (560)
.....+.++++++++||||||||++|++|++..+. ..+.++||++||++||.|+++.+.. .
T Consensus 13 ~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~---------------~~~~~~lvl~Ptr~La~Q~~~~l~g----~ 73 (459)
T 2z83_A 13 GSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAI---------------QQRLRTAVLAPTRVVAAEMAEALRG----L 73 (459)
T ss_dssp --CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHH---------------HTTCCEEEEECSHHHHHHHHHHTTT----S
T ss_pred HHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHH---------------hCCCcEEEECchHHHHHHHHHHhcC----c
Confidence 33455677899999999999999999999998762 2457899999999999999988862 1
Q ss_pred CCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccC
Q 008602 219 DKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRR 298 (560)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~ 298 (560)
.+....+.... -......+.++|.+.+.+.+... ..++++++|||||||++ +......+..+.....
T Consensus 74 ---~v~~~~~~~~~------~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~-~~~~~~~~~~~~~~~~-- 140 (459)
T 2z83_A 74 ---PVRYQTSAVQR------EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFT-DPASIAARGYIATKVE-- 140 (459)
T ss_dssp ---CEEECC--------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCC-SHHHHHHHHHHHHHHH--
T ss_pred ---eEeEEeccccc------CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccC-CchhhHHHHHHHHHhc--
Confidence 12221111100 01122347889999887765543 55789999999999982 2111111111111111
Q ss_pred CCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhh
Q 008602 299 SGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAK 378 (560)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (560)
.+..|+++||||++..+..+.. ...|......
T Consensus 141 --------------~~~~~~il~SAT~~~~~~~~~~--~~~pi~~~~~-------------------------------- 172 (459)
T 2z83_A 141 --------------LGEAAAIFMTATPPGTTDPFPD--SNAPIHDLQD-------------------------------- 172 (459)
T ss_dssp --------------TTSCEEEEECSSCTTCCCSSCC--CSSCEEEEEC--------------------------------
T ss_pred --------------cCCccEEEEEcCCCcchhhhcc--CCCCeEEecc--------------------------------
Confidence 2578999999999754321111 0112111100
Q ss_pred cccccCCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHH
Q 008602 379 QADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKK 458 (560)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~ 458 (560)
..+.. ...... ..+.. .++++||||+++..++.++..|++.++.+..+||. +|..+++.
T Consensus 173 ----~~~~~--------~~~~~~----~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~ 231 (459)
T 2z83_A 173 ----EIPDR--------AWSSGY----EWITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPK 231 (459)
T ss_dssp ----CCCSS--------CCSSCC----HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGG
T ss_pred ----cCCcc--------hhHHHH----HHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhh
Confidence 00000 000011 11222 26899999999999999999999999999999995 68889999
Q ss_pred hhcCCceEEEEecCcccCCCCCCCCEEEE--------------------ccCCCChhhhHhhhccccCCCC-cceEEEEe
Q 008602 459 FKNGEVRVLVTNELSARGLDVAECDLVVN--------------------LDLPTDSIHYAHRAGRTGRLGR-RGTVVSIC 517 (560)
Q Consensus 459 F~~g~~~iLvaT~~~~~Gidip~v~~VI~--------------------~~~p~s~~~y~Qr~GR~gR~g~-~g~~~~l~ 517 (560)
|++|+.+|||||+++++|+|+|+ ++||+ |+.|.|.++|+||+||+||.|. +|.||+|+
T Consensus 232 f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~ 310 (459)
T 2z83_A 232 CKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYG 310 (459)
T ss_dssp SSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEE
Confidence 99999999999999999999999 99999 7799999999999999999997 89999999
Q ss_pred cCc
Q 008602 518 EEP 520 (560)
Q Consensus 518 ~~~ 520 (560)
.+.
T Consensus 311 ~~~ 313 (459)
T 2z83_A 311 GAT 313 (459)
T ss_dssp SCC
T ss_pred ccc
Confidence 765
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=6.2e-37 Score=314.07 Aligned_cols=270 Identities=17% Similarity=0.222 Sum_probs=188.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEE
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~ 225 (560)
++++++++||||||||++|++|++..+. ..+.+++|++||++||.|+++.+. + ..+..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~---------------~~g~~~lvl~Pt~~La~Q~~~~~~----~---~~v~~ 58 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV---------------KKRLRTVILAPTRVVASEMYEALR----G---EPIRY 58 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH---------------HTTCCEEEEESSHHHHHHHHHHTT----T---SCEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---------------hCCCCEEEECcHHHHHHHHHHHhC----C---CeEEE
Confidence 3689999999999999999999985541 346789999999999999998775 1 12433
Q ss_pred EecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCC
Q 008602 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPRE 305 (560)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~ 305 (560)
..++.. ........+.++|.+.+.+.+.. ...++++++|||||+|++ +..+......+.....
T Consensus 59 ~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~--------- 121 (431)
T 2v6i_A 59 MTPAVQ------SERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS--------- 121 (431)
T ss_dssp C---------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH---------
T ss_pred EecCcc------ccCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh---------
Confidence 333211 12222234788899988776555 566889999999999995 5444444433333321
Q ss_pred chhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhcccccCC
Q 008602 306 PKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQSLP 385 (560)
Q Consensus 306 ~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (560)
++..++++||||+++.+..+... ..|..... ...+
T Consensus 122 -------~~~~~~l~~SAT~~~~~~~~~~~--~~~i~~~~------------------------------------~~~~ 156 (431)
T 2v6i_A 122 -------MGDAGAIFMTATPPGTTEAFPPS--NSPIIDEE------------------------------------TRIP 156 (431)
T ss_dssp -------TTSCEEEEEESSCTTCCCSSCCC--SSCCEEEE------------------------------------CCCC
T ss_pred -------CCCCcEEEEeCCCCcchhhhcCC--CCceeecc------------------------------------ccCC
Confidence 25789999999997632110000 00000000 0000
Q ss_pred cccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCce
Q 008602 386 PALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465 (560)
Q Consensus 386 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~ 465 (560)
. ... ..+...+.. .+++++|||+++++++.++..|++.++++..+||+ +|.++++.|++|+++
T Consensus 157 ~--------~~~----~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~ 219 (431)
T 2v6i_A 157 D--------KAW----NSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD 219 (431)
T ss_dssp S--------SCC----SSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS
T ss_pred H--------HHH----HHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe
Confidence 0 000 001122222 26799999999999999999999999999999997 578899999999999
Q ss_pred EEEEecCcccCCCCCCCCE-----------------EEEccCCCChhhhHhhhccccCCCCc-ceEEEEe
Q 008602 466 VLVTNELSARGLDVAECDL-----------------VVNLDLPTDSIHYAHRAGRTGRLGRR-GTVVSIC 517 (560)
Q Consensus 466 iLvaT~~~~~Gidip~v~~-----------------VI~~~~p~s~~~y~Qr~GR~gR~g~~-g~~~~l~ 517 (560)
|||||+++++|+|+| +.+ ||+++.|.+.++|+||+||+||.|.. |.++++.
T Consensus 220 vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 220 FVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999999999999 555 57889999999999999999999854 4455554
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=6.9e-36 Score=320.39 Aligned_cols=336 Identities=16% Similarity=0.163 Sum_probs=188.1
Q ss_pred CChHHHHHHHhhhhc----C-CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 132 VPTEVQSAAIPSILK----N-HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~----~-~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
.|+|+|.++++.+++ + ++++++++||+|||++++..+...+... +.. .....++++||++||++|+.|
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~-~~~------~~~~~~~~vlil~P~~~L~~Q 250 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSAR-WNR------TGDYRKPRILFLADRNVLVDD 250 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTT-CCS------SCSSSCCCEEEEEC-------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcc-ccc------ccccCCCeEEEEeCCHHHHHH
Confidence 799999999999876 4 6689999999999999877666554211 000 001256789999999999999
Q ss_pred HH-HHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHH----cCCccCCCeeEEEEechhhhhc
Q 008602 207 IV-REIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA----AGKLHTHGCRFLVLDEIDELLS 281 (560)
Q Consensus 207 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~----~~~~~~~~l~llIiDE~h~l~~ 281 (560)
++ +.++.+ + .. +..+.++. .....+|+|+||++|..... ...+...++++|||||||++..
T Consensus 251 ~~~~~~~~~-~---~~-~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 251 PKDKTFTPF-G---DA-RHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp ----CCTTT-C---SS-EEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred HHHHHHHhc-c---hh-hhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 99 666543 1 11 33333221 22356899999999988654 2234456789999999999765
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEee-cc------ccccCCC
Q 008602 282 FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA-KN------VIPLESM 354 (560)
Q Consensus 282 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~ 354 (560)
.. ...+..++..+ +..++++|||||..........+...+..... .. ..+....
T Consensus 317 ~~-~~~~~~il~~~------------------~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~ 377 (590)
T 3h1t_A 317 RD-NSNWREILEYF------------------EPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVH 377 (590)
T ss_dssp ------CHHHHHHS------------------TTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEE
T ss_pred cc-hHHHHHHHHhC------------------CcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEE
Confidence 32 24456666655 34689999999974433222222222222110 00 0000000
Q ss_pred CCCCCCCCCCC--CCCCCCCcchhhhcccccCCcccceEE-EEechhhHHHHHHHHHHh-cCCCeEEEEEcChhhHHHHH
Q 008602 355 PATGPGNLSGP--MSGSSSNSNLQAKQADQSLPPALKHYY-CVTKLQHKVDTLRRCVHA-LDAQTVIAFMNNTRQLKDAV 430 (560)
Q Consensus 355 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~~~~-~~~~~~iif~~~~~~~~~~~ 430 (560)
........... ................ .....+.... ...........+...+.. ..++++||||+++.+++.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~ 456 (590)
T 3h1t_A 378 RVISEVDAAGWRPSKGDVDRFGREIPDGE-YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMR 456 (590)
T ss_dssp EEEETTCC------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHH
T ss_pred Eeeeeeecccccccccccccccccccccc-CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHH
Confidence 00000000000 0000000000000000 0000000000 000001111223333333 34589999999999999999
Q ss_pred HHHHHCCC--------ceeeccCCCCHHHHHHHHHHhhcCCce---EEEEecCcccCCCCCCCCEEEEccCCCChhhhHh
Q 008602 431 FKLEARGM--------KAAELHGDLGKLARSTTLKKFKNGEVR---VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAH 499 (560)
Q Consensus 431 ~~L~~~~~--------~~~~lhg~~~~~~r~~v~~~F~~g~~~---iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Q 499 (560)
..|.+.+. .+..+||+++. +|..++++|++|+.+ |||||+++++|+|+|+|++||++++|+|...|+|
T Consensus 457 ~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q 535 (590)
T 3h1t_A 457 RALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQ 535 (590)
T ss_dssp HHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHH
T ss_pred HHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHH
Confidence 99987543 26788999754 799999999998866 8899999999999999999999999999999999
Q ss_pred hhccccCCCC
Q 008602 500 RAGRTGRLGR 509 (560)
Q Consensus 500 r~GR~gR~g~ 509 (560)
|+||+||.+.
T Consensus 536 ~iGR~~R~~~ 545 (590)
T 3h1t_A 536 IVGRGTRLRE 545 (590)
T ss_dssp HHTTSCCCBG
T ss_pred HHhhhcccCc
Confidence 9999999864
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.4e-36 Score=336.36 Aligned_cols=349 Identities=15% Similarity=0.185 Sum_probs=222.8
Q ss_pred CChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR 209 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~ 209 (560)
.|+|+|.+++..++.. .++|++++||+|||++++..+...+.. +...++||+||+ .|+.||..
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------------g~~~rvLIVvP~-sLl~Qw~~ 217 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS--------------GAAERVLIIVPE-TLQHQWLV 217 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT--------------SSCCCEEEECCT-TTHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh--------------CCCCeEEEEeCH-HHHHHHHH
Confidence 7999999999988874 589999999999999998888776621 223469999999 99999999
Q ss_pred HHHHHhCCCCCceEEEEecCCChhHHHHH--HHcCCCcEEEeCchHHHHHHHc-CCccCCCeeEEEEechhhhhccchH-
Q 008602 210 EIKKLLGPSDKKAVQQLVGGANRSRQEEA--LRKNKPAIVVGTPGRIAEISAA-GKLHTHGCRFLVLDEIDELLSFNFR- 285 (560)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~IlI~Tp~~l~~~l~~-~~~~~~~l~llIiDE~h~l~~~~~~- 285 (560)
++.++++.. +..+ ++......... ..-...+|+|+|++.+...... ..+...++++|||||||++...+..
T Consensus 218 E~~~~f~l~----v~v~-~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~ 292 (968)
T 3dmq_A 218 EMLRRFNLR----FALF-DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAP 292 (968)
T ss_dssp HHHHHSCCC----CEEC-CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBC
T ss_pred HHHHHhCCC----EEEE-ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcc
Confidence 998887421 2233 22221111111 0012457999999998642111 1133457899999999997544321
Q ss_pred HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCCh----HHHHHHHHcCCCCe--------------------
Q 008602 286 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPF----SVIRAARSWGHDPL-------------------- 341 (560)
Q Consensus 286 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~----~~~~~~~~~~~~~~-------------------- 341 (560)
......+..+. ....+++++||||.. +...+.........
T Consensus 293 s~~~~~l~~L~----------------~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~ 356 (968)
T 3dmq_A 293 SREYQAIEQLA----------------EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAV 356 (968)
T ss_dssp CHHHHHHHHHH----------------TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh----------------hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHH
Confidence 11112222221 123469999999953 11111111100000
Q ss_pred -------EEeeccccccCCCCCCCCCCCCCCCCCCCCCcc---------h---------------hhhcccccCCcccce
Q 008602 342 -------LVQAKNVIPLESMPATGPGNLSGPMSGSSSNSN---------L---------------QAKQADQSLPPALKH 390 (560)
Q Consensus 342 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---------------~~~~~~~~~~~~~~~ 390 (560)
.........+...... ............... . ........++.....
T Consensus 357 ~~l~~~~~~~~~~~~~L~~~l~~--~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~ 434 (968)
T 3dmq_A 357 AMLLAGNKLSNDELNMLGEMIGE--QDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELH 434 (968)
T ss_dssp HTTTTSCCCCGGGTTSSTTTTCT--TCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCC
T ss_pred HHHhccCCCCHHHHHHHHHHhcc--hhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheE
Confidence 0000000000000000 000000000000000 0 000000000000000
Q ss_pred ----------------------------------------------EEEEechhhHHHHHHHHHHhcCCCeEEEEEcChh
Q 008602 391 ----------------------------------------------YYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTR 424 (560)
Q Consensus 391 ----------------------------------------------~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~ 424 (560)
.........|...+.+++....++++||||+++.
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~ 514 (968)
T 3dmq_A 435 TIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAA 514 (968)
T ss_dssp EEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTH
T ss_pred eeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHH
Confidence 0012234467888888888878899999999999
Q ss_pred hHHHHHHHHHH-CCCceeeccCCCCHHHHHHHHHHhhcCC--ceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhh
Q 008602 425 QLKDAVFKLEA-RGMKAAELHGDLGKLARSTTLKKFKNGE--VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRA 501 (560)
Q Consensus 425 ~~~~~~~~L~~-~~~~~~~lhg~~~~~~r~~v~~~F~~g~--~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~ 501 (560)
.++.++..|.. .|+++..+||+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|.||+
T Consensus 515 ~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~ 594 (968)
T 3dmq_A 515 TALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRI 594 (968)
T ss_dssp HHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHh
Confidence 99999999995 5999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEEec
Q 008602 502 GRTGRLGRRGTVVSICE 518 (560)
Q Consensus 502 GR~gR~g~~g~~~~l~~ 518 (560)
||+||.|+.|.|++++.
T Consensus 595 GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 595 GRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp HTTSCSSSCSCCEEEEE
T ss_pred hccccCCCCceEEEEEe
Confidence 99999999987666543
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.6e-35 Score=310.96 Aligned_cols=293 Identities=19% Similarity=0.230 Sum_probs=210.5
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceE
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAV 223 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 223 (560)
.+++++++++||||||||+.++..+... ...+|++|||+||.|+++++++. +..+
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~l~~~--------------------~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v 206 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSA--------------------KSGVYCGPLKLLAHEIFEKSNAA-----GVPC 206 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHS--------------------SSEEEEESSHHHHHHHHHHHHHT-----TCCE
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc--------------------CCeEEEeCHHHHHHHHHHHHHhc-----CCcE
Confidence 3567899999999999999555444332 12599999999999999999885 2236
Q ss_pred EEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCC
Q 008602 224 QQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANP 303 (560)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~ 303 (560)
..++|+..... .-.....+++++|++.+. ....+++|||||+|++.+.++...+..++..+.
T Consensus 207 ~lltG~~~~iv---~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------- 268 (677)
T 3rc3_A 207 DLVTGEERVTV---QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------- 268 (677)
T ss_dssp EEECSSCEECC---STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC-------
T ss_pred EEEECCeeEEe---cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccC-------
Confidence 66777644310 000012457788875542 246789999999999999899999988887764
Q ss_pred CCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCCCCCCCCCCCCCCCCCCCCCcchhhhccccc
Q 008602 304 REPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATGPGNLSGPMSGSSSNSNLQAKQADQS 383 (560)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (560)
....+++++|||. +.+..+.........+.......+..
T Consensus 269 ---------~~~i~il~~SAT~-~~i~~l~~~~~~~~~v~~~~r~~~l~------------------------------- 307 (677)
T 3rc3_A 269 ---------AEEVHLCGEPAAI-DLVMELMYTTGEEVEVRDYKRLTPIS------------------------------- 307 (677)
T ss_dssp ---------EEEEEEEECGGGH-HHHHHHHHHHTCCEEEEECCCSSCEE-------------------------------
T ss_pred ---------ccceEEEeccchH-HHHHHHHHhcCCceEEEEeeecchHH-------------------------------
Confidence 2567999999995 34444444433322221111100000
Q ss_pred CCcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhc--
Q 008602 384 LPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKN-- 461 (560)
Q Consensus 384 ~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~-- 461 (560)
.....- ..+... ....+|||+++++++.++..|.+.++.+..+||+|++.+|..+++.|++
T Consensus 308 ---------~~~~~l-------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~ 370 (677)
T 3rc3_A 308 ---------VLDHAL-------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPN 370 (677)
T ss_dssp ---------ECSSCC-------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTT
T ss_pred ---------HHHHHH-------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccC
Confidence 000000 000111 2334788999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCcccCCCCCCCCEEEEccC--------------CCChhhhHhhhccccCCCCc---ceEEEEecCccHHH
Q 008602 462 GEVRVLVTNELSARGLDVAECDLVVNLDL--------------PTDSIHYAHRAGRTGRLGRR---GTVVSICEEPEVFV 524 (560)
Q Consensus 462 g~~~iLvaT~~~~~Gidip~v~~VI~~~~--------------p~s~~~y~Qr~GR~gR~g~~---g~~~~l~~~~e~~~ 524 (560)
|+++|||||+++++|||+ ++++||+++. |.+.++|+||+|||||.|.. |.|+.+++. +...
T Consensus 371 g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~ 448 (677)
T 3rc3_A 371 DPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSL 448 (677)
T ss_dssp SSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHH
T ss_pred CCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHH
Confidence 899999999999999999 8999999999 77999999999999999864 777777654 5556
Q ss_pred HHHHHHHhCCCcccc
Q 008602 525 VKKMQKQLAVPIQAC 539 (560)
Q Consensus 525 ~~~l~~~l~~~~~~~ 539 (560)
+..+......+++..
T Consensus 449 ~~~~~~~~~~~i~~~ 463 (677)
T 3rc3_A 449 LKEILKRPVDPIRAA 463 (677)
T ss_dssp HHHHHHSCCCCCCCE
T ss_pred HHHHHhcCcchhhhc
Confidence 666666655555543
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.3e-34 Score=274.47 Aligned_cols=219 Identities=29% Similarity=0.454 Sum_probs=192.0
Q ss_pred ccccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCC
Q 008602 101 EIESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180 (560)
Q Consensus 101 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~ 180 (560)
.+...|.+..+|.++++++.+.+.+.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++..+.....
T Consensus 20 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~--- 96 (242)
T 3fe2_A 20 RGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF--- 96 (242)
T ss_dssp ESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC---
T ss_pred eCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc---
Confidence 45567888899999999999999999999999999999999999999999999999999999999999988743211
Q ss_pred CCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc
Q 008602 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA 260 (560)
Q Consensus 181 ~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~ 260 (560)
.....++++||++||++|+.|+++.++++....+. .+..++||.....+...+..+ ++|+|+||++|.+++..
T Consensus 97 -----~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~ 169 (242)
T 3fe2_A 97 -----LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRL-KSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLEC 169 (242)
T ss_dssp -----CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHH
T ss_pred -----cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCc-eEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHc
Confidence 11245778999999999999999999988655443 367788998888887777764 68999999999999988
Q ss_pred CCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCC
Q 008602 261 GKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340 (560)
Q Consensus 261 ~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~ 340 (560)
....++++++||+||||++.+++|...+..++..++ +..|+++||||+++.+..++..++.+|
T Consensus 170 ~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-----------------~~~q~~~~SAT~~~~~~~~~~~~l~~~ 232 (242)
T 3fe2_A 170 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----------------PDRQTLMWSATWPKEVRQLAEDFLKDY 232 (242)
T ss_dssp TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC-----------------SSCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred CCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC-----------------ccceEEEEEeecCHHHHHHHHHHCCCC
Confidence 888899999999999999999999999999987763 578999999999999999999999999
Q ss_pred eEEeec
Q 008602 341 LLVQAK 346 (560)
Q Consensus 341 ~~~~~~ 346 (560)
..+..+
T Consensus 233 ~~i~~~ 238 (242)
T 3fe2_A 233 IHINIG 238 (242)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 988754
No 55
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.8e-34 Score=270.12 Aligned_cols=211 Identities=29% Similarity=0.483 Sum_probs=173.8
Q ss_pred cCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCC
Q 008602 104 SAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGN 183 (560)
Q Consensus 104 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~ 183 (560)
..|.+..+|+++++++.+.+.+..+||..|+++|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~--------- 94 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI--------- 94 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT---------
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh---------
Confidence 34556678999999999999999999999999999999999999999999999999999999999998732
Q ss_pred CCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCc
Q 008602 184 GESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKL 263 (560)
Q Consensus 184 ~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~ 263 (560)
...+.++||++||++|+.|+++.++++...... .+....|+.....+...+..+.++|+|+||++|.+.+.....
T Consensus 95 ----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~ 169 (237)
T 3bor_A 95 ----EFKETQALVLAPTRELAQQIQKVILALGDYMGA-TCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYL 169 (237)
T ss_dssp ----TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC-CEEEECC-------------CCCSEEEECHHHHHHHHHTTSS
T ss_pred ----cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc-eEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCc
Confidence 134678999999999999999999998655443 366788888877777777777789999999999999988888
Q ss_pred cCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEE
Q 008602 264 HTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343 (560)
Q Consensus 264 ~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 343 (560)
.+.++++||+||||++.+.++...+..++..++ ...|++++|||+++++..++..++.+|..+
T Consensus 170 ~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i 232 (237)
T 3bor_A 170 SPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN-----------------TSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232 (237)
T ss_dssp CSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC-----------------TTCEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred CcccCcEEEECCchHhhccCcHHHHHHHHHhCC-----------------CCCeEEEEEEecCHHHHHHHHHHCCCCEEE
Confidence 889999999999999999999999999988763 567999999999999999999999999877
Q ss_pred ee
Q 008602 344 QA 345 (560)
Q Consensus 344 ~~ 345 (560)
..
T Consensus 233 ~v 234 (237)
T 3bor_A 233 LV 234 (237)
T ss_dssp C-
T ss_pred Ee
Confidence 53
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=266.36 Aligned_cols=216 Identities=31% Similarity=0.481 Sum_probs=179.3
Q ss_pred cccCCcccCCccc-CCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCC
Q 008602 102 IESAPFAANSFLE-LGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSS 180 (560)
Q Consensus 102 ~~~~~~~~~~f~~-~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~ 180 (560)
....|.+...|.+ +++++.+.+.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~-- 88 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS-- 88 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch--
Confidence 3456778888999 8999999999999999999999999999999999999999999999999999999887432111
Q ss_pred CCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc
Q 008602 181 NGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA 260 (560)
Q Consensus 181 ~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~ 260 (560)
.....++++||++||++|+.|++++++++.. . ...+..++|+.....+...+..+ ++|+|+||++|.+++..
T Consensus 89 -----~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~ 160 (228)
T 3iuy_A 89 -----REQRNGPGMLVLTPTRELALHVEAECSKYSY-K-GLKSICIYGGRNRNGQIEDISKG-VDIIIATPGRLNDLQMN 160 (228)
T ss_dssp ---------CCCSEEEECSSHHHHHHHHHHHHHHCC-T-TCCEEEECC------CHHHHHSC-CSEEEECHHHHHHHHHT
T ss_pred -----hhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-c-CceEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHc
Confidence 1123578899999999999999999998752 2 33466778887777666666654 68999999999999988
Q ss_pred CCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCC
Q 008602 261 GKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340 (560)
Q Consensus 261 ~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~ 340 (560)
....++++++||+||||++.+.+|...+..++..++ ++.|++++|||+++.+..++..++.+|
T Consensus 161 ~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~-----------------~~~~~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 161 NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR-----------------PDRQTVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC-----------------SSCEEEEEESCCCHHHHHHHHTTCSSC
T ss_pred CCcCcccceEEEEECHHHHhccchHHHHHHHHHhCC-----------------cCCeEEEEEeeCCHHHHHHHHHHCCCC
Confidence 888899999999999999999999999999988773 678999999999999999999999999
Q ss_pred eEEe
Q 008602 341 LLVQ 344 (560)
Q Consensus 341 ~~~~ 344 (560)
..+.
T Consensus 224 ~~i~ 227 (228)
T 3iuy_A 224 MIVY 227 (228)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8764
No 57
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8e-34 Score=276.55 Aligned_cols=205 Identities=29% Similarity=0.436 Sum_probs=177.0
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~ 184 (560)
.+..+|+++++++.+++.+..+||..||++|.++|+.++.+ +|+++++|||||||++|++|++..+..
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~---------- 158 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---------- 158 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT----------
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc----------
Confidence 45678999999999999999999999999999999999997 999999999999999999999998732
Q ss_pred CCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc-CCc
Q 008602 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA-GKL 263 (560)
Q Consensus 185 ~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~-~~~ 263 (560)
...++++||++||++||.|+++.+..+........+....++....... ...++|+|+||++|.+++.. +.+
T Consensus 159 ---~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~ 231 (300)
T 3fmo_B 159 ---ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFI 231 (300)
T ss_dssp ---TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCC
T ss_pred ---cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCC
Confidence 2446789999999999999999999987665555577777776543322 34678999999999998865 567
Q ss_pred cCCCeeEEEEechhhhhc-cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeE
Q 008602 264 HTHGCRFLVLDEIDELLS-FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342 (560)
Q Consensus 264 ~~~~l~llIiDE~h~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~ 342 (560)
.++++++|||||||+|++ .+|...+..++..++ ..+|+++||||++..+..++..++.+|..
T Consensus 232 ~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~-----------------~~~q~i~~SAT~~~~v~~~a~~~l~~p~~ 294 (300)
T 3fmo_B 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-----------------RNCQMLLFSATFEDSVWKFAQKVVPDPNV 294 (300)
T ss_dssp CGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC-----------------TTCEEEEEESCCCHHHHHHHHHHSSSCEE
T ss_pred ChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC-----------------CCCEEEEEeccCCHHHHHHHHHHCCCCeE
Confidence 789999999999999998 688888888877663 56899999999999999999999999998
Q ss_pred Eee
Q 008602 343 VQA 345 (560)
Q Consensus 343 ~~~ 345 (560)
+..
T Consensus 295 i~~ 297 (300)
T 3fmo_B 295 IKL 297 (300)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 58
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-33 Score=261.94 Aligned_cols=209 Identities=31% Similarity=0.519 Sum_probs=181.1
Q ss_pred CcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCC
Q 008602 106 PFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGE 185 (560)
Q Consensus 106 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~ 185 (560)
+.....|+++++++.+.+.+...||..|+|+|.++++.+++++++++++|||+|||++|+++++..+..
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~----------- 78 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP----------- 78 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-----------
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc-----------
Confidence 344456999999999999999999999999999999999999999999999999999999999988732
Q ss_pred CCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccC
Q 008602 186 SGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHT 265 (560)
Q Consensus 186 ~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~ 265 (560)
...+.++||++||++|+.|++++++++....+...+..+.|+.........+..+.++|+|+||++|..++......+
T Consensus 79 --~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~ 156 (220)
T 1t6n_A 79 --VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNL 156 (220)
T ss_dssp --CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCC
T ss_pred --cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCc
Confidence 123568999999999999999999998766545557788898888888888888888999999999999988888889
Q ss_pred CCeeEEEEechhhhhc-cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEe
Q 008602 266 HGCRFLVLDEIDELLS-FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 344 (560)
.+++++|+||||++.+ .++...+..++..++ ...|++++|||++.++..+++.++.+|..+.
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTP-----------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC-----------------SSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC-----------------CcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9999999999999887 478888888876653 5679999999999999999999999998664
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2e-33 Score=263.96 Aligned_cols=211 Identities=30% Similarity=0.412 Sum_probs=178.5
Q ss_pred cccCCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCC
Q 008602 102 IESAPFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSN 181 (560)
Q Consensus 102 ~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~ 181 (560)
.+..|.+...|+++++++.+.+.+...||..|+++|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------- 88 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------- 88 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-------
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-------
Confidence 3455666678999999999999999999999999999999999999999999999999999999999988732
Q ss_pred CCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC
Q 008602 182 GNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG 261 (560)
Q Consensus 182 ~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~ 261 (560)
...+.++||++||++|+.|++++++++........+..+.|+.........+. .++|+|+||++|.+++...
T Consensus 89 ------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~Iiv~Tp~~l~~~~~~~ 160 (230)
T 2oxc_A 89 ------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK--KCHIAVGSPGRIKQLIELD 160 (230)
T ss_dssp ------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT--SCSEEEECHHHHHHHHHTT
T ss_pred ------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc--CCCEEEECHHHHHHHHhcC
Confidence 13467899999999999999999999876554455777888887766655543 4689999999999998888
Q ss_pred CccCCCeeEEEEechhhhhccc-hHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCC
Q 008602 262 KLHTHGCRFLVLDEIDELLSFN-FREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDP 340 (560)
Q Consensus 262 ~~~~~~l~llIiDE~h~l~~~~-~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~ 340 (560)
.+.+.++++||+||||++.+.+ |...+..++..++ ...|++++|||++.++..+...++.+|
T Consensus 161 ~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-----------------~~~~~l~lSAT~~~~~~~~~~~~~~~p 223 (230)
T 2oxc_A 161 YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP-----------------ASKQMLAVSATYPEFLANALTKYMRDP 223 (230)
T ss_dssp SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC-----------------SSCEEEEEESCCCHHHHHHHTTTCSSC
T ss_pred CcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC-----------------CCCeEEEEEeccCHHHHHHHHHHcCCC
Confidence 8888999999999999999887 9999999988773 467999999999999999999999999
Q ss_pred eEEe
Q 008602 341 LLVQ 344 (560)
Q Consensus 341 ~~~~ 344 (560)
..+.
T Consensus 224 ~~i~ 227 (230)
T 2oxc_A 224 TFVR 227 (230)
T ss_dssp EEEC
T ss_pred eEEE
Confidence 8775
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.2e-33 Score=257.52 Aligned_cols=203 Identities=31% Similarity=0.491 Sum_probs=179.3
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
.+|+++++++.+++.+..+||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.. ..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------~~ 69 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-------------KK 69 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-------------TS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-------------cC
Confidence 35999999999999999999999999999999999999999999999999999999999988732 23
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.+++++|++||++|+.|+++.+.++....+...+..+.|+.........+. ..++|+|+||++|.+.+..+...+++++
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 148 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQ 148 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT-SCCSEEEECHHHHHHHHHTTCSCCTTCC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC-CCCCEEEeCHHHHHHHHHcCCcCcccCC
Confidence 467899999999999999999999877664555777888888776665554 4578999999999999988888889999
Q ss_pred EEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEE
Q 008602 270 FLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLV 343 (560)
Q Consensus 270 llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~ 343 (560)
+||+||||++.+.++...+..++..++ ...|++++|||+++++..++..++.+|..+
T Consensus 149 ~lViDEah~~~~~~~~~~l~~i~~~~~-----------------~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 149 MIVLDEADKLLSQDFVQIMEDIILTLP-----------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHHSC-----------------TTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEEEEChHHhHhhCcHHHHHHHHHhCC-----------------ccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999999988773 467999999999999999999999988765
No 61
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=7e-33 Score=291.56 Aligned_cols=345 Identities=14% Similarity=0.153 Sum_probs=215.4
Q ss_pred CChHHHHHHHhhhh----cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSIL----KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~----~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.++|+|.++++.+. .+.+++++++||+|||++++..+...... ....++||+||+ .|+.||
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~--------------~~~~~~LIv~P~-~l~~qw 101 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE--------------NELTPSLVICPL-SVLKNW 101 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT--------------TCCSSEEEEECS-TTHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------------CCCCCEEEEccH-HHHHHH
Confidence 78999999998773 47899999999999999987666554311 224569999995 688999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHH
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREA 287 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~ 287 (560)
.+++.+++... .+..+.++... .....++|+|+||+.+.+... +....+++||+||||++.+... .
T Consensus 102 ~~e~~~~~~~~---~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~ 167 (500)
T 1z63_A 102 EEELSKFAPHL---RFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--K 167 (500)
T ss_dssp HHHHHHHCTTS---CEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--H
T ss_pred HHHHHHHCCCc---eEEEEecCchh------ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--H
Confidence 99999986432 24444444321 112346799999999976332 2334689999999999765431 1
Q ss_pred HHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChH----HHHHHHHcCC-------------------------
Q 008602 288 MHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS----VIRAARSWGH------------------------- 338 (560)
Q Consensus 288 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~----~~~~~~~~~~------------------------- 338 (560)
..+.+..+ ...+.+++||||..+ +..+......
T Consensus 168 ~~~~l~~l------------------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (500)
T 1z63_A 168 IFKAVKEL------------------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAK 229 (500)
T ss_dssp HHHHHHTS------------------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHH
T ss_pred HHHHHHhh------------------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHH
Confidence 22222222 234689999999542 1111111100
Q ss_pred -------CCeEEeecccc--ccCCCCCCCCCCCCCCCCCCCCCcchhhhcc-------cccC------------------
Q 008602 339 -------DPLLVQAKNVI--PLESMPATGPGNLSGPMSGSSSNSNLQAKQA-------DQSL------------------ 384 (560)
Q Consensus 339 -------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------------------ 384 (560)
.|..+...... ....++........ ........... ...+
T Consensus 230 ~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~------~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (500)
T 1z63_A 230 EELKAIISPFILRRTKYDKAIINDLPDKIETNVY------CNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLK 303 (500)
T ss_dssp HHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE------ECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHeeeecccccchhhcCCCCeEEEEE------cCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 01111000000 00000000000000 00000000000 0000
Q ss_pred -------CcccceEEEEechhhHHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHC-CCceeeccCCCCHHHHHH
Q 008602 385 -------PPALKHYYCVTKLQHKVDTLRRCVHAL--DAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARST 454 (560)
Q Consensus 385 -------~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~iif~~~~~~~~~~~~~L~~~-~~~~~~lhg~~~~~~r~~ 454 (560)
+..............|...+.+++... .+.+++|||++...++.+...|... ++.+..+||+++..+|.+
T Consensus 304 lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~ 383 (500)
T 1z63_A 304 LKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDD 383 (500)
T ss_dssp HHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHH
T ss_pred HHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHH
Confidence 000000000112235666666666653 6789999999999999999999885 999999999999999999
Q ss_pred HHHHhhcC-Cce-EEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceE--EEEecCc--cHHHHHHH
Q 008602 455 TLKKFKNG-EVR-VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTV--VSICEEP--EVFVVKKM 528 (560)
Q Consensus 455 v~~~F~~g-~~~-iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~--~~l~~~~--e~~~~~~l 528 (560)
+++.|++| ..+ +|++|+++++|+|+|.+++||+||+|+|+..|.||+||++|.|+.+.+ |.++... |...+..+
T Consensus 384 ~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~ 463 (500)
T 1z63_A 384 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLL 463 (500)
T ss_dssp HHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHH
T ss_pred HHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHH
Confidence 99999998 555 789999999999999999999999999999999999999999987654 5556554 44444443
Q ss_pred H
Q 008602 529 Q 529 (560)
Q Consensus 529 ~ 529 (560)
.
T Consensus 464 ~ 464 (500)
T 1z63_A 464 A 464 (500)
T ss_dssp T
T ss_pred H
Confidence 3
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-33 Score=261.41 Aligned_cols=206 Identities=34% Similarity=0.571 Sum_probs=177.2
Q ss_pred CCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCC
Q 008602 110 NSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKK 189 (560)
Q Consensus 110 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 189 (560)
.+|+++++++.+.+.+.++||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.. ..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------~~ 70 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------ER 70 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-------------TS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh-------------Cc
Confidence 46999999999999999999999999999999999999999999999999999999999998732 23
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCC---CceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSD---KKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||++||++|+.|++++++++....+ ...+..+.|+.+.......+. ..++|+|+||++|.+.+......+.
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~ 149 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN-VQPHIVIGTPGRINDFIREQALDVH 149 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCS-SCCSEEEECHHHHHHHHHTTCCCGG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcC-CCCCEEEeCHHHHHHHHHcCCCCcC
Confidence 467899999999999999999999876542 234666777766544433332 3578999999999999988888889
Q ss_pred CeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEeec
Q 008602 267 GCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAK 346 (560)
Q Consensus 267 ~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~ 346 (560)
++++||+||||++.+.++...+..++..++ +..|++++|||++.++..+++.++.+|..+...
T Consensus 150 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~-----------------~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 150 TAHILVVDEADLMLDMGFITDVDQIAARMP-----------------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSC-----------------TTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred cceEEEEcCchHHhhhChHHHHHHHHHhCC-----------------cccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 999999999999999999999999988763 567999999999999999999999999887643
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=7.2e-33 Score=259.44 Aligned_cols=208 Identities=30% Similarity=0.486 Sum_probs=173.9
Q ss_pred CCcccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCC
Q 008602 105 APFAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNG 184 (560)
Q Consensus 105 ~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~ 184 (560)
.+.....|+++++++.+.+.+..+||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~---------- 78 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---------- 78 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT----------
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc----------
Confidence 4455677999999999999999999999999999999999999999999999999999999999988732
Q ss_pred CCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCcc
Q 008602 185 ESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLH 264 (560)
Q Consensus 185 ~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~ 264 (560)
...++++||++||++|+.|+++.+.++....... +..+.|+.........+.. ++|+|+||++|.+.+......
T Consensus 79 ---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~~~~ 152 (224)
T 1qde_A 79 ---SVKAPQALMLAPTRELALQIQKVVMALAFHMDIK-VHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFR 152 (224)
T ss_dssp ---TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC-EEEECC----------CTT--CSEEEECHHHHHHHHHTTSSC
T ss_pred ---cCCCceEEEEECCHHHHHHHHHHHHHHhcccCce-EEEEeCCcchHHHHhcCCC--CCEEEECHHHHHHHHHhCCcc
Confidence 2346789999999999999999999886654433 6677777766555544433 689999999999998888888
Q ss_pred CCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEe
Q 008602 265 THGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344 (560)
Q Consensus 265 ~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 344 (560)
++++++||+||||++.+.++...+..++..++ +..|++++|||+++++..+...++.+|..+.
T Consensus 153 ~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~-----------------~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~ 215 (224)
T 1qde_A 153 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-----------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 215 (224)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC-----------------TTCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred hhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC-----------------ccCeEEEEEeecCHHHHHHHHHHCCCCEEEE
Confidence 89999999999999999999999999988763 5679999999999999999999999998875
Q ss_pred e
Q 008602 345 A 345 (560)
Q Consensus 345 ~ 345 (560)
.
T Consensus 216 ~ 216 (224)
T 1qde_A 216 V 216 (224)
T ss_dssp -
T ss_pred e
Confidence 3
No 64
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=7.5e-33 Score=262.79 Aligned_cols=205 Identities=31% Similarity=0.513 Sum_probs=178.1
Q ss_pred cCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCC
Q 008602 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGK 188 (560)
Q Consensus 109 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~ 188 (560)
..+|+++++++.+.+.+..+||..|+++|.++++.+++++++++++|||+|||++|++|++..+.. .
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~-------------~ 108 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE-------------T 108 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH-------------S
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc-------------C
Confidence 456999999999999999999999999999999999999999999999999999999999987632 1
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHc-CCccCCC
Q 008602 189 KTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAA-GKLHTHG 267 (560)
Q Consensus 189 ~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~-~~~~~~~ 267 (560)
..+.++||++||++|+.|++++++++....+.. +..+.||.....+...+.. .++|+|+||++|.+.+.. ..+.+.+
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQ-SAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCC-EEEECTTSCHHHHHHHHHT-CCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCee-EEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCCcCccc
Confidence 335679999999999999999999886654433 6678888877776666554 568999999999998775 4567889
Q ss_pred eeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEee
Q 008602 268 CRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345 (560)
Q Consensus 268 l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 345 (560)
+++||+||||++.+.+|...+..++..++ ...|+++||||++..+..+++.++.+|..+..
T Consensus 187 ~~~lViDEah~l~~~~~~~~l~~i~~~~~-----------------~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 187 LKYLVMDEADRILNMDFETEVDKILKVIP-----------------RDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHSSC-----------------SSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cCEEEEcChhhhhccChHHHHHHHHHhCC-----------------CCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999987763 56799999999999999999999999987753
No 65
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=6.9e-33 Score=264.50 Aligned_cols=226 Identities=29% Similarity=0.449 Sum_probs=185.9
Q ss_pred cccCCc--ccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCC
Q 008602 102 IESAPF--AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKS 179 (560)
Q Consensus 102 ~~~~~~--~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~ 179 (560)
+...|. +..+|+++++++.+.+.+...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.......
T Consensus 13 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~ 92 (253)
T 1wrb_A 13 GPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQ 92 (253)
T ss_dssp CCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC--
T ss_pred CCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccc
Confidence 344444 667899999999999999999999999999999999999999999999999999999999998874321110
Q ss_pred CCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHH
Q 008602 180 SNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISA 259 (560)
Q Consensus 180 ~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~ 259 (560)
. ......++++||++||++|+.|+++++.++....+.. +..+.||.....+...+.. .++|+|+||++|.+.+.
T Consensus 93 ~----~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 93 Q----RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLR-SCVVYGGADTHSQIREVQM-GCHLLVATPGRLVDFIE 166 (253)
T ss_dssp --------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCC-EEEECSSSCSHHHHHHHSS-CCSEEEECHHHHHHHHH
T ss_pred c----cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCce-EEEEECCCCHHHHHHHhCC-CCCEEEECHHHHHHHHH
Confidence 0 0012345789999999999999999999987655433 6678888887777666654 56899999999999998
Q ss_pred cCCccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCC
Q 008602 260 AGKLHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHD 339 (560)
Q Consensus 260 ~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~ 339 (560)
.....++++++||+||||++.+.+|...+..++..+.... ....|++++|||+++++..++..++.+
T Consensus 167 ~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~-------------~~~~q~l~~SAT~~~~~~~~~~~~l~~ 233 (253)
T 1wrb_A 167 KNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS-------------GINRQTLMFSATFPKEIQKLAADFLYN 233 (253)
T ss_dssp TTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC-------------GGGCEEEEEESSCCHHHHHHHHHHCSS
T ss_pred cCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC-------------CCCcEEEEEEEeCCHHHHHHHHHHcCC
Confidence 8888899999999999999999999999999987542100 136799999999999999999999999
Q ss_pred CeEEeec
Q 008602 340 PLLVQAK 346 (560)
Q Consensus 340 ~~~~~~~ 346 (560)
|..+..+
T Consensus 234 ~~~i~~~ 240 (253)
T 1wrb_A 234 YIFMTVG 240 (253)
T ss_dssp CEEEEEC
T ss_pred CEEEEEC
Confidence 9887654
No 66
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=264.38 Aligned_cols=217 Identities=27% Similarity=0.397 Sum_probs=177.9
Q ss_pred ccccCCcccCCcccC----CCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCC
Q 008602 101 EIESAPFAANSFLEL----GLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLK 176 (560)
Q Consensus 101 ~~~~~~~~~~~f~~~----~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~ 176 (560)
+....|.+..+|+++ ++++.+.+.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..
T Consensus 16 ~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-- 93 (245)
T 3dkp_A 16 QGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ-- 93 (245)
T ss_dssp ESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--
T ss_pred cCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--
Confidence 345677888889887 89999999999999999999999999999999999999999999999999999998832
Q ss_pred cCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHH
Q 008602 177 DKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAE 256 (560)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~ 256 (560)
....++++||++||++|+.|+++++.+++...+.. +..+.++..............++|+|+||++|.+
T Consensus 94 ----------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 162 (245)
T 3dkp_A 94 ----------PANKGFRALIISPTRELASQIHRELIKISEGTGFR-IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY 162 (245)
T ss_dssp ----------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCC-EECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHH
T ss_pred ----------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCce-EEEEecCccHHHHhhhhhcCCCCEEEECHHHHHH
Confidence 12456789999999999999999999987655443 4444444322222222234567899999999999
Q ss_pred HHHcC--CccCCCeeEEEEechhhhhc---cchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHH
Q 008602 257 ISAAG--KLHTHGCRFLVLDEIDELLS---FNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIR 331 (560)
Q Consensus 257 ~l~~~--~~~~~~l~llIiDE~h~l~~---~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~ 331 (560)
++... ...+.++++||+||||++.+ .++...+..++..+. .+..|+++||||+++++..
T Consensus 163 ~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~----------------~~~~~~~~~SAT~~~~v~~ 226 (245)
T 3dkp_A 163 LLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT----------------SHKVRRAMFSATFAYDVEQ 226 (245)
T ss_dssp HHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC----------------CTTCEEEEEESSCCHHHHH
T ss_pred HHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC----------------CCCcEEEEEeccCCHHHHH
Confidence 88876 46788999999999999888 468888888876653 2567999999999999999
Q ss_pred HHHHcCCCCeEEeec
Q 008602 332 AARSWGHDPLLVQAK 346 (560)
Q Consensus 332 ~~~~~~~~~~~~~~~ 346 (560)
+++.++.+|..+..+
T Consensus 227 ~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 227 WCKLNLDNVISVSIG 241 (245)
T ss_dssp HHHHHSSSCEEEEEC
T ss_pred HHHHhCCCCEEEEeC
Confidence 999999999888754
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=258.65 Aligned_cols=210 Identities=30% Similarity=0.451 Sum_probs=177.3
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
.+...|+++++++.+.+.+...||..|+|+|.++++.+++++++++++|||+|||++|++|++..+.....
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--------- 92 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--------- 92 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC---------
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc---------
Confidence 44567999999999999999999999999999999999999999999999999999999999987632110
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC-CccC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG-KLHT 265 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~-~~~~ 265 (560)
....++++||++||++|+.|++++++++....+. .+..+.|+.........+ ..++|+|+||++|.+.+... ...+
T Consensus 93 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~~~~~~~ 169 (236)
T 2pl3_A 93 TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF-SAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDETVSFHA 169 (236)
T ss_dssp CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC-CEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHHCSSCCC
T ss_pred cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe-eEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHhcCCccc
Confidence 1134678999999999999999999998655433 367788887776666555 35689999999999877654 4677
Q ss_pred CCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEee
Q 008602 266 HGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQA 345 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~ 345 (560)
.++++||+||||++.++++...+..++..++ ...|++++|||+++.+..+++.++.+|..+..
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~-----------------~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLP-----------------KKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSC-----------------TTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCC-----------------CCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 8999999999999999999999999988763 56799999999999999999999999988763
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.5e-32 Score=251.53 Aligned_cols=203 Identities=34% Similarity=0.565 Sum_probs=177.6
Q ss_pred CcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCC
Q 008602 111 SFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKT 190 (560)
Q Consensus 111 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 190 (560)
+|+++++++.+.+.+...||..|+|+|.++++.+++++++++++|||+|||++|+++++..+.... ....
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~----------~~~~ 71 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ----------ERGR 71 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC----------CTTC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc----------ccCC
Confidence 489999999999999999999999999999999999999999999999999999999999874311 1234
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeE
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~l 270 (560)
+++++|++||++|+.|+++++.+++.. ..+..+.|+.........+.. .++|+|+||+++.+.+......+.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLR-GADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHH-CCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhC-CCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 678999999999999999999998654 336678888877666666655 4689999999999998888888999999
Q ss_pred EEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeEEe
Q 008602 271 LVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQ 344 (560)
Q Consensus 271 lIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~ 344 (560)
||+||||++.+.++...+..++..++ +..|++++|||+++++..+++.++.+|..+.
T Consensus 148 iViDEah~~~~~~~~~~~~~i~~~~~-----------------~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 148 AVLDEADEMLSMGFEEEVEALLSATP-----------------PSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHTSC-----------------TTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEEEChhHhhccchHHHHHHHHHhCC-----------------ccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 99999999999999999998887653 5679999999999999999999999998775
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=5.8e-32 Score=279.15 Aligned_cols=337 Identities=15% Similarity=0.166 Sum_probs=234.6
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
..|. .|++.|.-..-.+.+|+ |..+.||+|||+++.+|++-.. -.|..|.|++||+.||.|
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnA----------------L~G~~vhVvT~ndyLA~r 131 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNA----------------LIGKGVHLVTVNDYLARR 131 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHH----------------TTSSCEEEEESSHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHH----------------hcCCceEEEeccHHHHHh
Confidence 3477 89999998888888775 9999999999999999998555 346679999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecC--------------------------------------------------CChhHHH
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGG--------------------------------------------------ANRSRQE 236 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~ 236 (560)
-++++..++...+.. ++++... .+.....
T Consensus 132 dae~m~~l~~~Lgls-vg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err 210 (822)
T 3jux_A 132 DALWMGPVYLFLGLR-VGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRK 210 (822)
T ss_dssp HHHHHHHHHHHTTCC-EEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHH
T ss_pred HHHHHHHHHHHhCCE-EEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHH
Confidence 999998887766554 5666651 1111111
Q ss_pred HHHHcCCCcEEEeCchHHH-HHHHcCC------ccCCCeeEEEEechhhhh-cc---------------chHHHHHHHHH
Q 008602 237 EALRKNKPAIVVGTPGRIA-EISAAGK------LHTHGCRFLVLDEIDELL-SF---------------NFREAMHRIVE 293 (560)
Q Consensus 237 ~~l~~~~~~IlI~Tp~~l~-~~l~~~~------~~~~~l~llIiDE~h~l~-~~---------------~~~~~l~~i~~ 293 (560)
.. ..+||++||..-|. +.|+.+. .....+.+.||||+|.++ |. .....+..+..
T Consensus 211 ~a---Y~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~ 287 (822)
T 3jux_A 211 EA---YLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAK 287 (822)
T ss_dssp HH---HHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTT
T ss_pred HH---hcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHH
Confidence 22 23589999998874 3454432 223568899999999743 21 11222222222
Q ss_pred HhccCCC-----------------------------CCC-----------------------------------------
Q 008602 294 HVGRRSG-----------------------------ANP----------------------------------------- 303 (560)
Q Consensus 294 ~~~~~~~-----------------------------~~~----------------------------------------- 303 (560)
.+..... ..+
T Consensus 288 ~l~~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR 367 (822)
T 3jux_A 288 KFVKDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGR 367 (822)
T ss_dssp SSCBTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCS
T ss_pred hcCcCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCc
Confidence 2211000 000
Q ss_pred ----CCchhhhh--------------------------hccCceEEEEEeeCChHHHHHHHHcCCCCeEEeeccccccCC
Q 008602 304 ----REPKSALA--------------------------MRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLES 353 (560)
Q Consensus 304 ----~~~~~~~~--------------------------~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (560)
+.+..++. .+--.++.+||+|...+..++...|.-+...+.+. .|..
T Consensus 368 ~m~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn--kp~~- 444 (822)
T 3jux_A 368 LLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTH--KPMI- 444 (822)
T ss_dssp CCCSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEECCCS--SCCC-
T ss_pred CCCCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEECCC--CCcc-
Confidence 00000000 00014799999999888888888776543333211 1100
Q ss_pred CCCCCCCCCCCCCCCCCCCcchhhhcccccCCcccceEEEEechhhHHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHH
Q 008602 354 MPATGPGNLSGPMSGSSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHAL--DAQTVIAFMNNTRQLKDAVF 431 (560)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~iif~~~~~~~~~~~~ 431 (560)
..............|...+...+... .+.++||||+++..++.++.
T Consensus 445 --------------------------------R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~ 492 (822)
T 3jux_A 445 --------------------------------RKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSS 492 (822)
T ss_dssp --------------------------------CEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHH
T ss_pred --------------------------------eeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHH
Confidence 00111123345566777777777652 57899999999999999999
Q ss_pred HHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCC--------CCCEEEEccCCCChhhhHhhhcc
Q 008602 432 KLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVA--------ECDLVVNLDLPTDSIHYAHRAGR 503 (560)
Q Consensus 432 ~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip--------~v~~VI~~~~p~s~~~y~Qr~GR 503 (560)
.|.+.|+++..+||+..+.++..+...|+.| .|+|||++++||+||+ +..+||+++.|.|...|.||+||
T Consensus 493 ~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGR 570 (822)
T 3jux_A 493 MLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGR 570 (822)
T ss_dssp HHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCc
Confidence 9999999999999996666665566666655 6999999999999998 56799999999999999999999
Q ss_pred ccCCCCcceEEEEecCccHH
Q 008602 504 TGRLGRRGTVVSICEEPEVF 523 (560)
Q Consensus 504 ~gR~g~~g~~~~l~~~~e~~ 523 (560)
+||.|.+|.+++|++.+|..
T Consensus 571 TGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 571 AGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp SSCSSCCCEEEEEEETTSHH
T ss_pred cccCCCCeeEEEEechhHHH
Confidence 99999999999999988743
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=263.05 Aligned_cols=206 Identities=31% Similarity=0.448 Sum_probs=174.0
Q ss_pred cCCcccCC--CCHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCC
Q 008602 109 ANSFLELG--LPPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGES 186 (560)
Q Consensus 109 ~~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~ 186 (560)
...|++++ +++.+++.+..+||..|+|+|.++++.++.+++++++||||||||++|++|++..+.....
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~--------- 121 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF--------- 121 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC---------
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc---------
Confidence 34577776 9999999999999999999999999999999999999999999999999999987732211
Q ss_pred CCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcC-CccC
Q 008602 187 GKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAG-KLHT 265 (560)
Q Consensus 187 ~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~-~~~~ 265 (560)
....+.++||++||++||.|+++.+++++..... .+..++|+.....+...+..+ ++|+|+||++|.+.+... ...+
T Consensus 122 ~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~ 199 (262)
T 3ly5_A 122 MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVH-TYGLIMGGSNRSAEAQKLGNG-INIIVATPGRLLDHMQNTPGFMY 199 (262)
T ss_dssp CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCS-CEEEECSSSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHCTTCCC
T ss_pred cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCc-eEEEEECCCCHHHHHHHhcCC-CCEEEEcHHHHHHHHHccCCccc
Confidence 1134678999999999999999999998776544 477888998888888777766 689999999999877655 4678
Q ss_pred CCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeE
Q 008602 266 HGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~ 342 (560)
+++++|||||||++.+++|...+..++..++ ..+|+++||||+++++..+++.++..+.+
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~-----------------~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLLP-----------------TRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHSC-----------------SSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhCC-----------------CCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 8999999999999999999999999998874 56799999999999999999988775543
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=4.5e-31 Score=292.43 Aligned_cols=344 Identities=15% Similarity=0.142 Sum_probs=218.6
Q ss_pred HHHHHHHHhCC-------CCCChHHHHHHHhhhhc--------------CCcEEEEcCCCchHHHHHHHHHHhhhCCCCc
Q 008602 119 PLLLERLEREG-------FNVPTEVQSAAIPSILK--------------NHDVVIQSYTGSGKTLAYLLPILSKVGPLKD 177 (560)
Q Consensus 119 ~~l~~~l~~~~-------~~~~~~~Q~~ai~~i~~--------------~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~ 177 (560)
+.+++.+..+. ...|+|+|..|++.+++ +++++++++||||||+++ ++++..+..
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--- 326 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--- 326 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT---
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh---
Confidence 44556666552 22599999999999876 368999999999999997 555555521
Q ss_pred CCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHH
Q 008602 178 KSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEI 257 (560)
Q Consensus 178 ~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~ 257 (560)
.....++||||||++|+.|+.++|..+... .+.++.+.......+....++|+|+||++|...
T Consensus 327 ----------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~ 389 (1038)
T 2w00_A 327 ----------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNL 389 (1038)
T ss_dssp ----------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHH
T ss_pred ----------cCCCceEEEEeCcHHHHHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHH
Confidence 122468999999999999999999886432 123455566666667666678999999999987
Q ss_pred HHcCC--ccCCCeeEEEEechhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHH-----
Q 008602 258 SAAGK--LHTHGCRFLVLDEIDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVI----- 330 (560)
Q Consensus 258 l~~~~--~~~~~l~llIiDE~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~----- 330 (560)
+.... ..+....+||+|||||+... .....+...+ +..++++|||||.....
T Consensus 390 l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~------------------p~a~~lgfTATP~~~~~~~~~~ 448 (1038)
T 2w00_A 390 MKAESDLPVYNQQVVFIFDECHRSQFG---EAQKNLKKKF------------------KRYYQFGFTGTPIFPENALGSE 448 (1038)
T ss_dssp HHHCCCCGGGGSCEEEEEESCCTTHHH---HHHHHHHHHC------------------SSEEEEEEESSCCCSTTCTTSC
T ss_pred HhcccchhccccccEEEEEccchhcch---HHHHHHHHhC------------------CcccEEEEeCCccccccchhhh
Confidence 66432 24567899999999996543 3345555554 45799999999974321
Q ss_pred HHHHHcCCCCeEEe-------eccccccCCCCCCCCCCCCCCCCC-CCCCcchhhhcccccCCcccceEEEEechhhHHH
Q 008602 331 RAARSWGHDPLLVQ-------AKNVIPLESMPATGPGNLSGPMSG-SSSNSNLQAKQADQSLPPALKHYYCVTKLQHKVD 402 (560)
Q Consensus 331 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 402 (560)
.....|+. +.... .+...|.... .......... ............. .... .. ...++.
T Consensus 449 ~t~~~FG~-~i~~Y~l~~AI~dg~l~p~~v~----y~~v~~~~~~~~~e~d~~~~~~i~--~~~~------l~-~~~ri~ 514 (1038)
T 2w00_A 449 TTASVFGR-ELHSYVITDAIRDEKVLKFKVD----YNDVRPQFKSLETETDEKKLSAAE--NQQA------FL-HPMRIQ 514 (1038)
T ss_dssp CHHHHHCS-EEEEECHHHHHHHTSSCCEEEE----ECCCCGGGHHHHTCCCHHHHHHTC--STTT------TT-CHHHHH
T ss_pred HHHHHhCC-eeEeecHHHHHhCCCcCCeEEE----EEeccchhhhccccccHHHHHHHH--HHHH------hc-CHHHHH
Confidence 11122221 11100 0000110000 0000000000 0000000000000 0000 01 112222
Q ss_pred HHHH-HHH---hc--------CCCeEEEEEcChhhHHHHHHHHHHCC------------Cce-eeccCC----------C
Q 008602 403 TLRR-CVH---AL--------DAQTVIAFMNNTRQLKDAVFKLEARG------------MKA-AELHGD----------L 447 (560)
Q Consensus 403 ~l~~-~~~---~~--------~~~~~iif~~~~~~~~~~~~~L~~~~------------~~~-~~lhg~----------~ 447 (560)
.+.. ++. .. .+.+++|||+++..+..++..|.+.+ +++ ..+||+ +
T Consensus 515 ~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~ 594 (1038)
T 2w00_A 515 EITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEI 594 (1038)
T ss_dssp HHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCC
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCcccccccccc
Confidence 2222 222 11 34689999999999999999997753 454 445542 2
Q ss_pred ----------CHH-----------------------------HHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEc
Q 008602 448 ----------GKL-----------------------------ARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNL 488 (560)
Q Consensus 448 ----------~~~-----------------------------~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~ 488 (560)
++. .|..++++|++|+++|||+|+++.+|+|+|.+ .++++
T Consensus 595 ~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlyl 673 (1038)
T 2w00_A 595 SDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFV 673 (1038)
T ss_dssp CCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEE
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEE
Confidence 221 37889999999999999999999999999999 67889
Q ss_pred cCCCChhhhHhhhccccCCCCc----ceEEEEecC
Q 008602 489 DLPTDSIHYAHRAGRTGRLGRR----GTVVSICEE 519 (560)
Q Consensus 489 ~~p~s~~~y~Qr~GR~gR~g~~----g~~~~l~~~ 519 (560)
|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 674 Dkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 674 DKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp ESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred ccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999999999998753 777777753
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-30 Score=287.79 Aligned_cols=367 Identities=16% Similarity=0.180 Sum_probs=231.0
Q ss_pred CChHHHHHHHhhhh----cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSIL----KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~----~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.++|+|.++++.+. .+.++|++.+||+|||++++..+...+.. ......+||+|| ..|+.||
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~-------------~~~~~~~LIV~P-~sll~qW 301 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA-------------RRQNGPHIIVVP-LSTMPAW 301 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHH-------------HSCCSCEEEECC-TTTHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHh-------------cCCCCCEEEEEC-chHHHHH
Confidence 68999999998776 67899999999999999987777554311 122345899999 6788999
Q ss_pred HHHHHHHhCCCCCceEEEEecCCChhHHHHHH-----------HcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEech
Q 008602 208 VREIKKLLGPSDKKAVQQLVGGANRSRQEEAL-----------RKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEI 276 (560)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~ 276 (560)
.+++.+++.. ..+..+.|+.......... ....++|+|+|++.+...... +....+++||||||
T Consensus 302 ~~E~~~~~p~---~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEa 376 (800)
T 3mwy_W 302 LDTFEKWAPD---LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEA 376 (800)
T ss_dssp HHHHHHHSTT---CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTG
T ss_pred HHHHHHHCCC---ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhh
Confidence 9999998643 2244455544433332222 234678999999999763221 22235789999999
Q ss_pred hhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCC----hHHHHHHHHcCCCC------------
Q 008602 277 DELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVP----FSVIRAARSWGHDP------------ 340 (560)
Q Consensus 277 h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~----~~~~~~~~~~~~~~------------ 340 (560)
|++-+... .....+..+ .....+++||||. .++..+........
T Consensus 377 H~lkn~~s--~~~~~l~~l------------------~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~ 436 (800)
T 3mwy_W 377 HRLKNAES--SLYESLNSF------------------KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ 436 (800)
T ss_dssp GGGCCSSS--HHHHHHTTS------------------EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC
T ss_pred hhhcCchh--HHHHHHHHh------------------hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccccc
Confidence 99754321 222222222 2345789999994 22222222221111
Q ss_pred -----------------eEEeeccccccCCCCCCCCC----CCCC----------------CCCCC-CCC-cchh----h
Q 008602 341 -----------------LLVQAKNVIPLESMPATGPG----NLSG----------------PMSGS-SSN-SNLQ----A 377 (560)
Q Consensus 341 -----------------~~~~~~~~~~~~~~~~~~~~----~~~~----------------~~~~~-~~~-~~~~----~ 377 (560)
.++......-...++..... .++. ..... ... .... .
T Consensus 437 ~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~L 516 (800)
T 3mwy_W 437 DEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNEL 516 (800)
T ss_dssp TTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 00000000000000000000 0000 00000 000 0000 0
Q ss_pred hc--cc-ccCCcc----cce---E--------EEEechhhHHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHCC
Q 008602 378 KQ--AD-QSLPPA----LKH---Y--------YCVTKLQHKVDTLRRCVHAL--DAQTVIAFMNNTRQLKDAVFKLEARG 437 (560)
Q Consensus 378 ~~--~~-~~~~~~----~~~---~--------~~~~~~~~k~~~l~~~~~~~--~~~~~iif~~~~~~~~~~~~~L~~~~ 437 (560)
.. .. ..+... ... . ........|...|.+++... .+.++|||+.....++.+...|...+
T Consensus 517 rk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g 596 (800)
T 3mwy_W 517 KKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKG 596 (800)
T ss_dssp HHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCC
Confidence 00 00 000000 000 0 00011245666777777663 56899999999999999999999999
Q ss_pred CceeeccCCCCHHHHHHHHHHhhcCCc---eEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcce--
Q 008602 438 MKAAELHGDLGKLARSTTLKKFKNGEV---RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGT-- 512 (560)
Q Consensus 438 ~~~~~lhg~~~~~~r~~v~~~F~~g~~---~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~-- 512 (560)
+.+..+||+++..+|..+++.|+++.. .+|++|.+++.|||++.+++||+||+|+|+..+.||+||++|.|+...
T Consensus 597 ~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 676 (800)
T 3mwy_W 597 INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVM 676 (800)
T ss_dssp CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEE
Confidence 999999999999999999999998654 499999999999999999999999999999999999999999998654
Q ss_pred EEEEecCc--cHHHHHHHHHHhCCCcc
Q 008602 513 VVSICEEP--EVFVVKKMQKQLAVPIQ 537 (560)
Q Consensus 513 ~~~l~~~~--e~~~~~~l~~~l~~~~~ 537 (560)
+|.|+... |...++...+++...-.
T Consensus 677 Vyrlv~~~TiEe~i~~~~~~K~~l~~~ 703 (800)
T 3mwy_W 677 VYRLVSKDTVEEEVLERARKKMILEYA 703 (800)
T ss_dssp EEEEEETTSHHHHHHHHHHHHTTSCC-
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 56666655 77788877777655433
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5e-30 Score=275.70 Aligned_cols=367 Identities=17% Similarity=0.187 Sum_probs=226.7
Q ss_pred CChHHHHHHHhhhh---------cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 132 VPTEVQSAAIPSIL---------KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~---------~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
.++|+|.+++..+. .+..+|++.+||+|||++++..+...+..... ......++||+||+ .
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~---------~~p~~~~~LiV~P~-s 124 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD---------CKPEIDKVIVVSPS-S 124 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT---------SSCSCSCEEEEECH-H
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc---------ccCCCCcEEEEecH-H
Confidence 68999999999874 34678999999999999988887765522110 01123469999997 7
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCCChh--HHHHHHHc-----CCCcEEEeCchHHHHHHHcCCccCCCeeEEEEec
Q 008602 203 LGMQIVREIKKLLGPSDKKAVQQLVGGANRS--RQEEALRK-----NKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDE 275 (560)
Q Consensus 203 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-----~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE 275 (560)
|+.||.+++.+++.. ... +..+.+|.... ........ ...+|+|+|++.+.... ..+....+++||+||
T Consensus 125 ll~qW~~E~~~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DE 200 (644)
T 1z3i_X 125 LVRNWYNEVGKWLGG-RVQ-PVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDE 200 (644)
T ss_dssp HHHHHHHHHHHHHGG-GCC-EEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETT
T ss_pred HHHHHHHHHHHHcCC-Cee-EEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEEC
Confidence 889999999999764 222 33344443321 11122211 13679999999997632 233345688999999
Q ss_pred hhhhhccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHH-------HH------------HHHHc
Q 008602 276 IDELLSFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSV-------IR------------AARSW 336 (560)
Q Consensus 276 ~h~l~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~-------~~------------~~~~~ 336 (560)
+|++.+... .....+..+ .....+++||||..+. .. |...|
T Consensus 201 aH~ikn~~~--~~~~al~~l------------------~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f 260 (644)
T 1z3i_X 201 GHRLKNSDN--QTYLALNSM------------------NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRF 260 (644)
T ss_dssp GGGCCTTCH--HHHHHHHHH------------------CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHT
T ss_pred ceecCChhh--HHHHHHHhc------------------ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhh
Confidence 999754331 122222233 2346899999985321 11 11111
Q ss_pred CC-----------------------------CCeEEe-eccccccCCCCCCCC----CCCC------------------C
Q 008602 337 GH-----------------------------DPLLVQ-AKNVIPLESMPATGP----GNLS------------------G 364 (560)
Q Consensus 337 ~~-----------------------------~~~~~~-~~~~~~~~~~~~~~~----~~~~------------------~ 364 (560)
.. .|.++. ..... ...++.... ..++ .
T Consensus 261 ~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v-~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~ 339 (644)
T 1z3i_X 261 EIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDIL-SKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVES 339 (644)
T ss_dssp HHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGG-GGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGS
T ss_pred cchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH-hhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 000000 00000 000000000 0000 0
Q ss_pred CCCCCCCCcchhh-------------------------hcccccCCcccceEEEEechhhHHHHHHHHHHh---cCCCeE
Q 008602 365 PMSGSSSNSNLQA-------------------------KQADQSLPPALKHYYCVTKLQHKVDTLRRCVHA---LDAQTV 416 (560)
Q Consensus 365 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~---~~~~~~ 416 (560)
...+......... ......++..............|...+..++.. ..+.++
T Consensus 340 ~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~ 419 (644)
T 1z3i_X 340 LQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKV 419 (644)
T ss_dssp SCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEE
T ss_pred HhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEE
Confidence 0000000000000 000000000000001112234555566555544 357899
Q ss_pred EEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCc---eEEEEecCcccCCCCCCCCEEEEccCCCC
Q 008602 417 IAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV---RVLVTNELSARGLDVAECDLVVNLDLPTD 493 (560)
Q Consensus 417 iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~---~iLvaT~~~~~Gidip~v~~VI~~~~p~s 493 (560)
|||++....++.+...|...++.+..+||+|+..+|..+++.|++|+. .+|++|+++++|||++++++||+||+|+|
T Consensus 420 lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wn 499 (644)
T 1z3i_X 420 VLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWN 499 (644)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSS
T ss_pred EEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999875 48999999999999999999999999999
Q ss_pred hhhhHhhhccccCCCCcce--EEEEecCc--cHHHHHHHHHHhC
Q 008602 494 SIHYAHRAGRTGRLGRRGT--VVSICEEP--EVFVVKKMQKQLA 533 (560)
Q Consensus 494 ~~~y~Qr~GR~gR~g~~g~--~~~l~~~~--e~~~~~~l~~~l~ 533 (560)
+..|.|++||++|.|+... +|.++... |...+.....+.+
T Consensus 500 p~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~ 543 (644)
T 1z3i_X 500 PANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKA 543 (644)
T ss_dssp HHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHH
Confidence 9999999999999998654 55566554 5555555554433
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.2e-28 Score=264.49 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=108.4
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC-
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL- 490 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~- 490 (560)
.+.++||||++...++.++..|.+.++.+..+||+|++.+|..++++|+.|+++|||||+++++|+|+|++++||++|.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHH
Q 008602 491 ----PTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKM 528 (560)
Q Consensus 491 ----p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l 528 (560)
|.|..+|+||+||+||.+ .|.|++++++.+..+...+
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 899999999999999995 7999999988766554444
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=3.7e-28 Score=214.72 Aligned_cols=155 Identities=26% Similarity=0.484 Sum_probs=147.5
Q ss_pred CcccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCc
Q 008602 385 PPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464 (560)
Q Consensus 385 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~ 464 (560)
+..+.+++.......|...|.+++....++++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 34577888888889999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCcccc
Q 008602 465 RVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQAC 539 (560)
Q Consensus 465 ~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~ 539 (560)
+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.|...+..+++.++.+++..
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEEC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988764
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=3.9e-27 Score=247.71 Aligned_cols=131 Identities=16% Similarity=0.151 Sum_probs=109.4
Q ss_pred hCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH
Q 008602 127 REGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ 206 (560)
Q Consensus 127 ~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q 206 (560)
..|+ .|+++|..+++.+++|+ +..+.||+|||++|.+|++... ..|.+|+|++||++||.|
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~a----------------L~G~qv~VvTPTreLA~Q 135 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNA----------------LTGKGVHVVTVNDYLARR 135 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHH----------------TTCSCCEEEESSHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHH----------------HhCCCEEEEeCCHHHHHH
Confidence 3599 99999999999999997 9999999999999999997554 235579999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHH-HHHHHcCC------ccCC---CeeEEEEech
Q 008602 207 IVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRI-AEISAAGK------LHTH---GCRFLVLDEI 276 (560)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l-~~~l~~~~------~~~~---~l~llIiDE~ 276 (560)
+++++..++...+.. ++.++||.+....... ..++|+||||+.| .+++..+. ..++ ++.++||||+
T Consensus 136 dae~m~~l~~~lGLs-v~~i~Gg~~~~~r~~a---y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEa 211 (997)
T 2ipc_A 136 DAEWMGPVYRGLGLS-VGVIQHASTPAERRKA---YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEV 211 (997)
T ss_dssp HHHHHHHHHHTTTCC-EEECCTTCCHHHHHHH---HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTH
T ss_pred HHHHHHHHHHhcCCe-EEEEeCCCCHHHHHHH---cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEech
Confidence 999999998776554 7888998875433332 2468999999999 77777653 4577 8999999999
Q ss_pred hhhh
Q 008602 277 DELL 280 (560)
Q Consensus 277 h~l~ 280 (560)
|+|+
T Consensus 212 DsmL 215 (997)
T 2ipc_A 212 DSIL 215 (997)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9987
No 77
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=3.6e-28 Score=224.23 Aligned_cols=166 Identities=28% Similarity=0.438 Sum_probs=150.5
Q ss_pred cceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEE
Q 008602 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467 (560)
Q Consensus 388 ~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iL 467 (560)
..+.........|.+.|.+++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 34556667778899999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCcee
Q 008602 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLV 547 (560)
Q Consensus 468 vaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~ 547 (560)
|||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.|++|+++.+...+..+++.++.+++....+....+
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei 165 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEV 165 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHH
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887665554
Q ss_pred ecccch
Q 008602 548 IGKEEE 553 (560)
Q Consensus 548 ~~~~~~ 553 (560)
.....+
T Consensus 166 ~~~~~~ 171 (212)
T 3eaq_A 166 LEAKWR 171 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.2e-28 Score=216.09 Aligned_cols=161 Identities=28% Similarity=0.497 Sum_probs=145.0
Q ss_pred cccceEEEEechhh-HHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCc
Q 008602 386 PALKHYYCVTKLQH-KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEV 464 (560)
Q Consensus 386 ~~~~~~~~~~~~~~-k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~ 464 (560)
..+.+++....... |...|..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~ 85 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 85 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSC
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 45667777666544 99999999988888999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCcccCCCCCCCCEEEEccCC------CChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccc
Q 008602 465 RVLVTNELSARGLDVAECDLVVNLDLP------TDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQA 538 (560)
Q Consensus 465 ~iLvaT~~~~~Gidip~v~~VI~~~~p------~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~ 538 (560)
+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.|++|+++.+...+..+.+.++.+++.
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 165 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQ 165 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCEE
T ss_pred eEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcccc
Confidence 999999999999999999999999999 89999999999999999999999999999999999999999999998
Q ss_pred cccCCCce
Q 008602 539 CEFTEGRL 546 (560)
Q Consensus 539 ~~~~~~~~ 546 (560)
.+....+.
T Consensus 166 ~~~~~~~~ 173 (175)
T 2rb4_A 166 LNAEDMDE 173 (175)
T ss_dssp ECSSCCC-
T ss_pred cCCchhcc
Confidence 88766543
No 79
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=2.5e-27 Score=254.21 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=108.0
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCCCCEEEEccC-
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDL- 490 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~v~~VI~~~~- 490 (560)
.+.++||||++...++.++..|.+.++++..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCChhhhHhhhccccCCCCcceEEEEecCccHHHHHH
Q 008602 491 ----PTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKK 527 (560)
Q Consensus 491 ----p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~ 527 (560)
|.|..+|+||+||+||. ..|.|++++++.+..+...
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~ 563 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIA 563 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHH
Confidence 99999999999999998 7899999998876554433
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=2e-27 Score=210.59 Aligned_cols=157 Identities=27% Similarity=0.542 Sum_probs=140.9
Q ss_pred ccceEEEEechhh-HHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCce
Q 008602 387 ALKHYYCVTKLQH-KVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465 (560)
Q Consensus 387 ~~~~~~~~~~~~~-k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~ 465 (560)
.+.+++....... |...|.+++....++++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 3556666666555 999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCC
Q 008602 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTE 543 (560)
Q Consensus 466 iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~ 543 (560)
|||||+++++|+|+|++++||+||+|++..+|.||+||+||.|+.|.|++++++.+...+..+++.++.+++..+..-
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988876553
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.4e-27 Score=212.65 Aligned_cols=157 Identities=24% Similarity=0.436 Sum_probs=146.2
Q ss_pred cccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCce
Q 008602 386 PALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465 (560)
Q Consensus 386 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~ 465 (560)
..+.+++.......|...|.+++....++++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 35677888888899999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCc-cHHHHHHHHHHhCCCccccccC
Q 008602 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP-EVFVVKKMQKQLAVPIQACEFT 542 (560)
Q Consensus 466 iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~-e~~~~~~l~~~l~~~~~~~~~~ 542 (560)
|||||+++++|+|+|++++||+||+|+|+..|+||+||+||.|+.|.+++|+++. +...+..+++.++.+++.++..
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 9999999999999999999999999999999999999999999999999999876 6788999999999999877654
No 82
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=2.6e-27 Score=228.46 Aligned_cols=166 Identities=27% Similarity=0.431 Sum_probs=148.7
Q ss_pred cceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEE
Q 008602 388 LKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVL 467 (560)
Q Consensus 388 ~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iL 467 (560)
+.+++..+....|.+.|.+++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 45677778888999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCCCcee
Q 008602 468 VTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLV 547 (560)
Q Consensus 468 vaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~ 547 (560)
|||+++++|+|+|++++||+||.|++...|+||+||+||.|+.|.|++|+++.+...+..+++.++.+++....+....+
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei 162 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEV 162 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHH
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877765544
Q ss_pred ecccch
Q 008602 548 IGKEEE 553 (560)
Q Consensus 548 ~~~~~~ 553 (560)
.....+
T Consensus 163 ~~~~~~ 168 (300)
T 3i32_A 163 LEAKWR 168 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=209.25 Aligned_cols=154 Identities=27% Similarity=0.433 Sum_probs=128.6
Q ss_pred CcccceEEEEechhhHHHHHHHHHHhc-CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCC
Q 008602 385 PPALKHYYCVTKLQHKVDTLRRCVHAL-DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGE 463 (560)
Q Consensus 385 ~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~ 463 (560)
...+.+.+.......|...|.+++... .++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 446777888888889999999999886 5789999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccc
Q 008602 464 VRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQA 538 (560)
Q Consensus 464 ~~iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~ 538 (560)
.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...+..+.+.++...+.
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp SSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred CeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999998888887554443
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=6.6e-26 Score=204.99 Aligned_cols=149 Identities=23% Similarity=0.412 Sum_probs=132.6
Q ss_pred cccceEEEEechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCce
Q 008602 386 PALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVR 465 (560)
Q Consensus 386 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~ 465 (560)
..+.+.+.......|...|.+++... ++++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 28 ~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 106 (191)
T 2p6n_A 28 LDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD 106 (191)
T ss_dssp CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS
T ss_pred cCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE
Confidence 35667777777888999999888764 56899999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCc-cHHHHHHHHHHhCCC
Q 008602 466 VLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEP-EVFVVKKMQKQLAVP 535 (560)
Q Consensus 466 iLvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~-e~~~~~~l~~~l~~~ 535 (560)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.|++|+++. +...+..+.+.++..
T Consensus 107 vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 107 VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEA 177 (191)
T ss_dssp EEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999876 777777777765433
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=1.9e-27 Score=211.70 Aligned_cols=156 Identities=28% Similarity=0.529 Sum_probs=142.6
Q ss_pred cceEEEEech-hhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceE
Q 008602 388 LKHYYCVTKL-QHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466 (560)
Q Consensus 388 ~~~~~~~~~~-~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~i 466 (560)
+.+++..... ..|...|..++....++++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 3344444444 778888888888777889999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceEEEEecCccHHHHHHHHHHhCCCccccccCC
Q 008602 467 LVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTVVSICEEPEVFVVKKMQKQLAVPIQACEFTE 543 (560)
Q Consensus 467 LvaT~~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~~~l~~~~e~~~~~~l~~~l~~~~~~~~~~~ 543 (560)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++++++.+...+..+.+.++.+++...+..
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDE 160 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888776643
No 86
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=8.4e-23 Score=191.91 Aligned_cols=185 Identities=21% Similarity=0.242 Sum_probs=137.6
Q ss_pred CHHHHHHHHhCCCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEE
Q 008602 118 PPLLLERLEREGFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIV 197 (560)
Q Consensus 118 ~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil 197 (560)
++.+.+.........++++|.++++.+.+|++++++|+||||||+++..+++...... ....+.+++++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~-----------~~~~~~~~l~~ 115 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQN-----------DRAAECNIVVT 115 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHT-----------TCGGGCEEEEE
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhc-----------CCCCceEEEEe
Confidence 4445555555545578999999999999999999999999999999888888765211 01234589999
Q ss_pred ccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechh
Q 008602 198 APSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEID 277 (560)
Q Consensus 198 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h 277 (560)
+|+++|+.|+++.+...++......++........ .....++|+|+||++|.+.+.. .++++++||+||||
T Consensus 116 ~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah 186 (235)
T 3llm_A 116 QPRRISAVSVAERVAFERGEEPGKSCGYSVRFESI------LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIH 186 (235)
T ss_dssp ESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEE------CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTT
T ss_pred ccchHHHHHHHHHHHHHhccccCceEEEeechhhc------cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCc
Confidence 99999999999999888765544444433322111 1113467999999999998776 47889999999999
Q ss_pred hh-hccchH-HHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHcCCCCeE
Q 008602 278 EL-LSFNFR-EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLL 342 (560)
Q Consensus 278 ~l-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~ 342 (560)
++ ++.++. ..++.++... ++.|+++||||++.+. +.+.+..+|.+
T Consensus 187 ~~~~~~~~~~~~l~~i~~~~------------------~~~~~il~SAT~~~~~--~~~~~~~~pvi 233 (235)
T 3llm_A 187 ERDINTDFLLVVLRDVVQAY------------------PEVRIVLMSATIDTSM--FCEYFFNCPII 233 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHHC------------------TTSEEEEEECSSCCHH--HHHHTTSCCCE
T ss_pred cCCcchHHHHHHHHHHHhhC------------------CCCeEEEEecCCCHHH--HHHHcCCCCEE
Confidence 85 666766 4556665543 5689999999998776 77777776654
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.88 E-value=8.9e-23 Score=189.53 Aligned_cols=177 Identities=14% Similarity=0.095 Sum_probs=114.3
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHH-HHH
Q 008602 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQ-IVR 209 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q-~~~ 209 (560)
..|+|+|.++++.+++++++++++|||+|||++|+.++...+..... ...+.++||++|+++|+.| +.+
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~----------~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK----------ASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH----------TTCCCCEEEEESSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc----------ccCCCcEEEEECHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999876521100 0235679999999999999 778
Q ss_pred HHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCC------ccCCCeeEEEEechhhhhccc
Q 008602 210 EIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGK------LHTHGCRFLVLDEIDELLSFN 283 (560)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~------~~~~~l~llIiDE~h~l~~~~ 283 (560)
.+.++... ...+..+.|+.........+.. .++|+|+||+.|...+.... ..+.++++|||||||++.+.+
T Consensus 102 ~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 178 (216)
T 3b6e_A 102 EFQPFLKK--WYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA 178 (216)
T ss_dssp THHHHHTT--TSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------
T ss_pred HHHHHhcc--CceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC
Confidence 88887654 2335556665544333333322 36799999999999877643 567889999999999987765
Q ss_pred hHHHH-HHHHHHhccCCCCCCCCchhhhhhccCceEEEEEee
Q 008602 284 FREAM-HRIVEHVGRRSGANPREPKSALAMRAERQTIMVSAT 324 (560)
Q Consensus 284 ~~~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT 324 (560)
+...+ ..++......... ........+..++++||||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 179 VYNNIMRHYLMQKLKNNRL----KKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HHTTCCCCCCCEEEEEECC
T ss_pred cHHHHHHHHHHHhcccccc----cccccCCCCcceEEEeecC
Confidence 54444 3333222100000 0000000146799999998
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.85 E-value=1.8e-21 Score=204.82 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=67.9
Q ss_pred HHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEE--EecCcccCCCCC
Q 008602 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLV--TNELSARGLDVA 480 (560)
Q Consensus 403 ~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLv--aT~~~~~Gidip 480 (560)
.+.+++. ..++.++||+++...++.++..|.. .. ...+|.. .++.++++.|+.+. .||+ ||..+.+|||+|
T Consensus 375 ~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 375 LLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 3444443 3568999999999999999988764 22 3445553 46889999998865 6777 789999999999
Q ss_pred C----CCEEEEccCCCCh------------------------------hhhHhhhccccCCCCcceEEEEec
Q 008602 481 E----CDLVVNLDLPTDS------------------------------IHYAHRAGRTGRLGRRGTVVSICE 518 (560)
Q Consensus 481 ~----v~~VI~~~~p~s~------------------------------~~y~Qr~GR~gR~g~~g~~~~l~~ 518 (560)
+ +++||++++|... ..+.|.+||+-|....--++++++
T Consensus 448 ~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 448 EKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp ----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred CCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 7 8999999988522 224688899999744323444454
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=1.6e-21 Score=188.71 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=116.5
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.|+|+|.++++.++++.+.+++++||+|||++++.++...+. ..+.++||++||++|+.||++++
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~---------------~~~~~~lil~Pt~~L~~q~~~~l 177 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE---------------NYEGKILIIVPTTALTTQMADDF 177 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH---------------HCSSEEEEECSSHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHH---------------cCCCeEEEEECCHHHHHHHHHHH
Confidence 899999999999998888999999999999999888877651 12337999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i 291 (560)
.++.... ...+..+.+|..... ......+|+|+||+.+.+. ....+.++++||+||||++.+ ..+..+
T Consensus 178 ~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~i 245 (282)
T 1rif_A 178 VDYRLFS-HAMIKKIGGGASKDD----KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSI 245 (282)
T ss_dssp HHHTSCC-GGGEEECSTTCSSTT----CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHH
T ss_pred HHhcccc-cceEEEEeCCCcchh----hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHH
Confidence 9875433 333566667655432 1113467999999987542 224567899999999999764 244555
Q ss_pred HHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHH
Q 008602 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSV 329 (560)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~ 329 (560)
+..+. ...+++++|||++...
T Consensus 246 l~~~~-----------------~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 246 ISGLN-----------------NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TTTCT-----------------TCCEEEEECSSCCTTS
T ss_pred HHHhh-----------------cCCeEEEEeCCCCCcc
Confidence 44432 4679999999997554
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.84 E-value=8e-19 Score=185.39 Aligned_cols=132 Identities=20% Similarity=0.129 Sum_probs=94.9
Q ss_pred CCCCChHHHHHHHhhh----hcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHH
Q 008602 129 GFNVPTEVQSAAIPSI----LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELG 204 (560)
Q Consensus 129 ~~~~~~~~Q~~ai~~i----~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La 204 (560)
|| +++|.|.+++..+ ..++++++.+|||+|||++|++|++.. +.+++|++||++|+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-------------------~~~v~i~~pt~~l~ 60 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-------------------KPKVLFVVRTHNEF 60 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-------------------CSEEEEEESSGGGH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-------------------CCeEEEEcCCHHHH
Confidence 45 7999999987754 468999999999999999999999872 35699999999999
Q ss_pred HHHHHHHHHHhCCCCCceEEEEecCCCh---------------------------------hHHHHHH------------
Q 008602 205 MQIVREIKKLLGPSDKKAVQQLVGGANR---------------------------------SRQEEAL------------ 239 (560)
Q Consensus 205 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~l------------ 239 (560)
.|+.+++..+....+.. +..+.|+.+. ......+
T Consensus 61 ~q~~~~~~~l~~~~~~~-~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy 139 (551)
T 3crv_A 61 YPIYRDLTKIREKRNIT-FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPY 139 (551)
T ss_dssp HHHHHHHTTCCCSSCCC-EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHhhhcCcc-EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCcc
Confidence 99999887764433332 3344442211 1111111
Q ss_pred -----HcCCCcEEEeCchHHHHHHHcCCccC-CCeeEEEEechhhhhc
Q 008602 240 -----RKNKPAIVVGTPGRIAEISAAGKLHT-HGCRFLVLDEIDELLS 281 (560)
Q Consensus 240 -----~~~~~~IlI~Tp~~l~~~l~~~~~~~-~~l~llIiDE~h~l~~ 281 (560)
....++|||+||+.|.+......+.+ ....++||||||+|.+
T Consensus 140 ~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 140 YSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 12346899999999988544333322 4668999999999776
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=3.7e-19 Score=166.71 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=106.1
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.++++|.++++.++++.++++++|||+|||.+++.++... +.+++|++|+++|+.||++++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-------------------~~~~liv~P~~~L~~q~~~~~ 153 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------------STPTLIVVPTLALAEQWKERL 153 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-------------------CSCEEEEESSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-------------------CCCEEEEeCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999998887653 235999999999999999999
Q ss_pred HHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHH
Q 008602 212 KKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291 (560)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i 291 (560)
.+ + +...+..+.++... ..+|+|+|++.+...... ...++++|||||+|++.+..+.. +
T Consensus 154 ~~-~---~~~~v~~~~g~~~~----------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~~----i 212 (237)
T 2fz4_A 154 GI-F---GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----I 212 (237)
T ss_dssp GG-G---CGGGEEEESSSCBC----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHHH----H
T ss_pred Hh-C---CCCeEEEEeCCCCC----------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHHH----H
Confidence 88 4 22225555555432 457999999998774432 12458999999999977655433 3
Q ss_pred HHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChH
Q 008602 292 VEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFS 328 (560)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 328 (560)
+..+ ...+++++|||+...
T Consensus 213 ~~~~------------------~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 213 AQMS------------------IAPFRLGLTATFERE 231 (237)
T ss_dssp HHTC------------------CCSEEEEEEESCC--
T ss_pred HHhc------------------cCCEEEEEecCCCCC
Confidence 3333 356899999999643
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=1.5e-18 Score=165.33 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHC-CCceeeccCCCCHHHHHHHHHHhhcC-Cce-EEEEec
Q 008602 397 LQHKVDTLRRCVHAL--DAQTVIAFMNNTRQLKDAVFKLEAR-GMKAAELHGDLGKLARSTTLKKFKNG-EVR-VLVTNE 471 (560)
Q Consensus 397 ~~~k~~~l~~~~~~~--~~~~~iif~~~~~~~~~~~~~L~~~-~~~~~~lhg~~~~~~r~~v~~~F~~g-~~~-iLvaT~ 471 (560)
...|...|.+++... .+.++||||+....++.+...|... ++.+..+||++++.+|..+++.|++| +.+ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 456788888888764 6889999999999999999999885 99999999999999999999999998 677 789999
Q ss_pred CcccCCCCCCCCEEEEccCCCChhhhHhhhccccCCCCcceE--EEEecCc--cHHHHHHHHHH
Q 008602 472 LSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGTV--VSICEEP--EVFVVKKMQKQ 531 (560)
Q Consensus 472 ~~~~Gidip~v~~VI~~~~p~s~~~y~Qr~GR~gR~g~~g~~--~~l~~~~--e~~~~~~l~~~ 531 (560)
++++|+|++.+++||+||+|+|+..|.||+||++|.|+.+.+ |.++... |...++.+.++
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K 237 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFK 237 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHC
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987754 6666554 55555544433
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.72 E-value=2.3e-16 Score=167.79 Aligned_cols=111 Identities=12% Similarity=0.176 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec--CcccCCCCC
Q 008602 403 TLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE--LSARGLDVA 480 (560)
Q Consensus 403 ~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~--~~~~Gidip 480 (560)
.+..++.. .++.++||+++...++.++..|+. .... ...+++..++..+++.|+ ++-.||+++. .+.+|||+|
T Consensus 439 ~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~ 513 (620)
T 4a15_A 439 VIEDIILK-VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFP 513 (620)
T ss_dssp HHHHHHHH-HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC-------
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCC
Confidence 34444443 367799999999999999888762 2222 455566778999999999 8889999985 899999999
Q ss_pred C--CCEEEEccCCCCh-----------------------------hhhHhhhccccCCCCcceEEEEec
Q 008602 481 E--CDLVVNLDLPTDS-----------------------------IHYAHRAGRTGRLGRRGTVVSICE 518 (560)
Q Consensus 481 ~--v~~VI~~~~p~s~-----------------------------~~y~Qr~GR~gR~g~~g~~~~l~~ 518 (560)
+ +..||....|... ....|.+||+-|....--++++++
T Consensus 514 g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 514 GNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp -CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred CCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 5 7899988877421 113688999999755434455554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.68 E-value=3.4e-08 Score=104.96 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=54.7
Q ss_pred hHHHHHHHhhhhcCCcEEEEcCCCchHH--HHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 134 TEVQSAAIPSILKNHDVVIQSYTGSGKT--LAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 134 ~~~Q~~ai~~i~~~~~~li~~~TGsGKT--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
++.|..|++.++.++.+++.|++|+||| +.++++.+..+. ...+.++++++||..+|.++.+.+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--------------~~~~~~vll~APTg~AA~~L~e~~ 216 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--------------DGERCRIRLAAPTGKAAARLTESL 216 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--------------SSCCCCEEEEBSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--------------hcCCCeEEEEeCChhHHHHHHHHH
Confidence 7899999999999999999999999999 556666665441 123567999999999999998877
Q ss_pred HHH
Q 008602 212 KKL 214 (560)
Q Consensus 212 ~~~ 214 (560)
...
T Consensus 217 ~~~ 219 (608)
T 1w36_D 217 GKA 219 (608)
T ss_dssp THH
T ss_pred HHH
Confidence 654
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.13 E-value=5.5e-06 Score=88.93 Aligned_cols=67 Identities=24% Similarity=0.247 Sum_probs=56.3
Q ss_pred CChHHHHHHHhhhhcCC-cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNH-DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~-~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
.+.+.|.+|+..++..+ -.||.||+|||||.+....+...+ ..+.++|+++||..-++++.++
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~----------------~~~~~ILv~a~TN~AvD~i~er 252 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV----------------KQGLKVLCCAPSNIAVDNLVER 252 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH----------------HTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH----------------hCCCeEEEEcCchHHHHHHHHH
Confidence 47899999999988765 578999999999999777777666 4466899999999999999988
Q ss_pred HHHH
Q 008602 211 IKKL 214 (560)
Q Consensus 211 ~~~~ 214 (560)
+...
T Consensus 253 L~~~ 256 (646)
T 4b3f_X 253 LALC 256 (646)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8653
No 96
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.06 E-value=0.0003 Score=75.73 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=57.0
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.+++.|.+|+.. .+..++|.|+.|||||.+.+.-+...+... .....+++++++|+..+.++.+++
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~------------~~~~~~iL~ltft~~aa~e~~~rl 74 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE------------NCSPYSIMAVTFTNKAAAEMRHRI 74 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTS------------CCCGGGEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhC------------CCChhhEEEEeccHHHHHHHHHHH
Confidence 678999999984 356799999999999999777666655210 122357999999999999999999
Q ss_pred HHHhCC
Q 008602 212 KKLLGP 217 (560)
Q Consensus 212 ~~~~~~ 217 (560)
.+.++.
T Consensus 75 ~~~~~~ 80 (647)
T 3lfu_A 75 GQLMGT 80 (647)
T ss_dssp HHHHCS
T ss_pred HHHhcc
Confidence 988654
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.03 E-value=1.2e-05 Score=84.45 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=50.5
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.+++.|..|+..++.+..++|.|+.|+|||.+... ++..+. ..+.++++++||...+..+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~-l~~~l~---------------~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKA-VADLAE---------------SLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHH-HHHHHH---------------HTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH-HHHHHH---------------hcCCeEEEecCcHHHHHHhHhhh
Confidence 68999999999999999999999999999987433 333331 34567999999998887765543
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.99 E-value=1.1e-05 Score=82.76 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=49.8
Q ss_pred HhCCCCCChHHHHHHHhhhhcC-----CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCC-eeEEEEcc
Q 008602 126 EREGFNVPTEVQSAAIPSILKN-----HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTD-IEAVIVAP 199 (560)
Q Consensus 126 ~~~~~~~~~~~Q~~ai~~i~~~-----~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~vlil~P 199 (560)
.-..|..+++.|.+|+..++.. ..++|.|+.|||||.+....+.... ..+ ..+++++|
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~----------------~~~~~~il~~a~ 82 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALI----------------STGETGIILAAP 82 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHH----------------HTTCCCEEEEES
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHH----------------hcCCceEEEecC
Confidence 3346778999999999976542 3899999999999987544443333 122 36999999
Q ss_pred CHHHHHHHHHHH
Q 008602 200 SRELGMQIVREI 211 (560)
Q Consensus 200 t~~La~Q~~~~~ 211 (560)
|...|..+.+.+
T Consensus 83 T~~Aa~~l~~~~ 94 (459)
T 3upu_A 83 THAAKKILSKLS 94 (459)
T ss_dssp SHHHHHHHHHHH
T ss_pred cHHHHHHHHhhh
Confidence 988877665544
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.98 E-value=3.6e-05 Score=82.06 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=55.6
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
..+++.|..|+..++.+...+|.||+|+|||.+....+...+. ..+.++++++||...+.++.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~---------------~~~~~ilv~a~tn~A~~~l~~~ 243 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR---------------QGNGPVLVCAPSNIAVDQLTEK 243 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHT---------------SSSCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHH---------------cCCCeEEEEeCcHHHHHHHHHH
Confidence 4678999999999888888999999999999986655544431 1356799999999999999888
Q ss_pred HHH
Q 008602 211 IKK 213 (560)
Q Consensus 211 ~~~ 213 (560)
+.+
T Consensus 244 l~~ 246 (624)
T 2gk6_A 244 IHQ 246 (624)
T ss_dssp HHT
T ss_pred HHh
Confidence 865
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=3.9e-05 Score=83.72 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=56.5
Q ss_pred CCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHH
Q 008602 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVR 209 (560)
Q Consensus 130 ~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~ 209 (560)
+..+++.|.+|+..++.+...+|.||.|+|||.+....+...+. ..+.++++++||...+.++.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~---------------~~~~~ILv~a~tn~A~d~l~~ 422 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSK---------------IHKDRILVCAPSNVAVDHLAA 422 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHH---------------HHCCCEEEEESSHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh---------------CCCCeEEEEcCcHHHHHHHHH
Confidence 34678999999999988878899999999999886555544331 134579999999999999999
Q ss_pred HHHHH
Q 008602 210 EIKKL 214 (560)
Q Consensus 210 ~~~~~ 214 (560)
++.+.
T Consensus 423 rL~~~ 427 (802)
T 2xzl_A 423 KLRDL 427 (802)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 98764
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.85 E-value=8.5e-05 Score=80.95 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=55.1
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHH
Q 008602 131 NVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVRE 210 (560)
Q Consensus 131 ~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~ 210 (560)
..+++.|.+|+..++.+...+|.||+|+|||.+....+...+. ..+.++++++||...|.++.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~---------------~~~~~ilv~a~tn~A~~~l~~~ 419 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR---------------QGNGPVLVCAPSNIAVDQLTEK 419 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHT---------------TCSSCEEEEESSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHH---------------cCCCcEEEEcCcHHHHHHHHHH
Confidence 3678999999999988888999999999999986555444331 1356799999999999999888
Q ss_pred HHH
Q 008602 211 IKK 213 (560)
Q Consensus 211 ~~~ 213 (560)
+.+
T Consensus 420 l~~ 422 (800)
T 2wjy_A 420 IHQ 422 (800)
T ss_dssp HHT
T ss_pred HHH
Confidence 765
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.75 E-value=0.00034 Score=66.59 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=87.7
Q ss_pred hhhHHHHHHHHHHh--cCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcc
Q 008602 397 LQHKVDTLRRCVHA--LDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA 474 (560)
Q Consensus 397 ~~~k~~~l~~~~~~--~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~ 474 (560)
.+.|...|.+++.. ..+.+++||++..+.++-+..++...++....+.|.....++ +. .++...+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCC
Confidence 56788888887765 357899999999999999999999999999999998544322 11 245666666677666
Q ss_pred cCCC-----CCCCCEEEEccCCCChhhh-HhhhccccCCC----CcceEEEEecCcc
Q 008602 475 RGLD-----VAECDLVVNLDLPTDSIHY-AHRAGRTGRLG----RRGTVVSICEEPE 521 (560)
Q Consensus 475 ~Gid-----ip~v~~VI~~~~p~s~~~y-~Qr~GR~gR~g----~~g~~~~l~~~~e 521 (560)
-|++ ...+++||.||..+++..= +|.+-|+.|.| +.-.+|-+++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6775 6789999999999999874 89888888863 3445777776553
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.32 E-value=0.00063 Score=60.05 Aligned_cols=39 Identities=21% Similarity=0.069 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSR 201 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~ 201 (560)
++-.+++|++|+|||+.++..+.... ..+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~----------------~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK----------------LGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH----------------HTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH----------------HCCCeEEEEeecc
Confidence 55678999999999999877776665 3456789998873
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.18 E-value=0.0055 Score=60.39 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=56.4
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.++|+|...+..+...+.+++..+-+.|||.+....++..+.. ..+..+++++|++..|..+.+.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~--------------~~g~~v~~vA~t~~qA~~vf~~i 228 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------------NKDKAVGILAHKGSMSAEVLDRT 228 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS--------------SSSCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh--------------CCCCeEEEEeCCHHHHHHHHHHH
Confidence 7899999999877655678999999999999876666553311 34567999999999999888888
Q ss_pred HHHhC
Q 008602 212 KKLLG 216 (560)
Q Consensus 212 ~~~~~ 216 (560)
..++.
T Consensus 229 ~~mi~ 233 (385)
T 2o0j_A 229 KQAIE 233 (385)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.13 E-value=0.00067 Score=61.61 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=58.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEE
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL 226 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~ 226 (560)
|.-.+++|++|+|||+.++..+.... ..|.+++++.|...-- . .......
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~----------------~~g~kVli~~~~~d~r---~--~~~i~sr--------- 61 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE----------------YADVKYLVFKPKIDTR---S--IRNIQSR--------- 61 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH----------------HTTCCEEEEEECCCGG---G--CSSCCCC---------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH----------------hcCCEEEEEEeccCch---H--HHHHHHh---------
Confidence 55688999999999999888887776 4566799998764210 0 0000000
Q ss_pred ecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHH
Q 008602 227 VGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRI 291 (560)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i 291 (560)
.| .. ...+.+.+...++..+... ..-.+.++|||||++. ++....+.+..+
T Consensus 62 lG-~~-----------~~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~-l~~~~ve~l~~L 112 (223)
T 2b8t_A 62 TG-TS-----------LPSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQF-FDDRICEVANIL 112 (223)
T ss_dssp CC-CS-----------SCCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGG-SCTHHHHHHHHH
T ss_pred cC-CC-----------ccccccCCHHHHHHHHHHH-hhCCCCCEEEEecCcc-CcHHHHHHHHHH
Confidence 01 00 0124456666666655432 2224578999999997 443343444333
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.11 E-value=0.0014 Score=57.99 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSR 201 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~ 201 (560)
++-.+++|++|+|||+.++..+.... ..|.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~----------------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK----------------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH----------------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----------------HCCCEEEEEEecc
Confidence 45678999999999999888777765 4567899999973
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.08 E-value=0.0013 Score=58.82 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
|+-.+++|++|+|||+.++..+..+. ..|.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~----------------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ----------------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH----------------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----------------HCCCEEEEEEeccC
Confidence 44567899999999999888888876 55778999999753
No 108
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.93 E-value=0.015 Score=61.35 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=58.6
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.++|+|...+..+-..+.+++.++-|+|||......++..+.. ..+..+++++|+...|..+.+.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~--------------~~~~~i~~va~t~~qA~~~~~~i 228 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------------NKDKAVGILAHKGSMSAEVLDRT 228 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT--------------SSSCEEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh--------------CCCCeEEEEECCHHHHHHHHHHH
Confidence 6899999999887556779999999999999866555444321 23567999999999999999988
Q ss_pred HHHhCCCC
Q 008602 212 KKLLGPSD 219 (560)
Q Consensus 212 ~~~~~~~~ 219 (560)
+..+...+
T Consensus 229 ~~~i~~~p 236 (592)
T 3cpe_A 229 KQAIELLP 236 (592)
T ss_dssp HHHHTTSC
T ss_pred HHHHHhCh
Confidence 88876554
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.0043 Score=54.36 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=24.5
Q ss_pred hHHHHHHHhhhh---------cCCcEEEEcCCCchHHHHHHHH
Q 008602 134 TEVQSAAIPSIL---------KNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 134 ~~~Q~~ai~~i~---------~~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+.|..++..+. .++.++++||+|+|||..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHH
Confidence 455666665543 3678999999999999875433
No 110
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.83 E-value=0.0023 Score=63.94 Aligned_cols=93 Identities=23% Similarity=0.183 Sum_probs=55.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEe
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLV 227 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~ 227 (560)
+-.++.|+.|+|||......+ .. ...+|++||++++..|.+.+.+. + ..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~-~~--------------------~~~lVlTpT~~aa~~l~~kl~~~-~---~~------ 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRV-NF--------------------EEDLILVPGRQAAEMIRRRANAS-G---II------ 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHC-CT--------------------TTCEEEESCHHHHHHHHHHHTTT-S---CC------
T ss_pred cEEEEEcCCCCCHHHHHHHHh-cc--------------------CCeEEEeCCHHHHHHHHHHhhhc-C---cc------
Confidence 456899999999998743221 10 12699999999999888777432 0 00
Q ss_pred cCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHH
Q 008602 228 GGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAM 288 (560)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l 288 (560)
.....-|.|.+.++- .......-..++|||||+- |++.+....+
T Consensus 211 --------------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~~~l~~l 254 (446)
T 3vkw_A 211 --------------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHTGCVNFL 254 (446)
T ss_dssp --------------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCHHHHHHH
T ss_pred --------------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCHHHHHHH
Confidence 001134566555432 1111111237899999998 5665544433
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.69 E-value=0.0023 Score=54.18 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~ 166 (560)
.+..+++.|++|+|||..+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 678899999999999986433
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.68 E-value=0.0045 Score=55.82 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=33.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
|+-.+++|++|+|||+.++..+..+. ..|.+++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~----------------~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ----------------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH----------------TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH----------------HCCCeEEEEeecCC
Confidence 55678999999999999888888877 56778999998753
No 113
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.59 E-value=0.0038 Score=54.83 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccC
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPS 200 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt 200 (560)
++-.+++|++|+|||+-.+..+-... ..+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~----------------~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQ----------------IAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH----------------HTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH----------------HcCCeEEEEccc
Confidence 45678999999999988788877765 345679999886
No 114
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.58 E-value=0.0018 Score=57.78 Aligned_cols=99 Identities=11% Similarity=0.105 Sum_probs=57.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEE
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQ 225 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~ 225 (560)
.|.-.+++|++|+|||+..+..+.... ..+.+++++.|...--.. ...+... .+..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~----------------~~g~kvli~kp~~D~R~~-~~~I~Sr---~G~~---- 82 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGI----------------YAKQKVVVFKPAIDDRYH-KEKVVSH---NGNA---- 82 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH----------------HTTCCEEEEEEC------------CB---TTBC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH----------------HcCCceEEEEeccCCcch-hhhHHHh---cCCc----
Confidence 355678999999999998777776655 446779999996531100 0111111 1111
Q ss_pred EecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEEechhhhhccchHHHHHHHH
Q 008602 226 LVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVLDEIDELLSFNFREAMHRIV 292 (560)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIiDE~h~l~~~~~~~~l~~i~ 292 (560)
.+.+.|..+..+... + ..+.++|+|||||- ++....+.+..+.
T Consensus 83 -----------------~~a~~v~~~~di~~~-----i-~~~~dvV~IDEaQF-f~~~~v~~l~~la 125 (219)
T 3e2i_A 83 -----------------IEAINISKASEIMTH-----D-LTNVDVIGIDEVQF-FDDEIVSIVEKLS 125 (219)
T ss_dssp -----------------CEEEEESSGGGGGGS-----C-CTTCSEEEECCGGG-SCTHHHHHHHHHH
T ss_pred -----------------eeeEEeCCHHHHHHH-----H-hcCCCEEEEechhc-CCHHHHHHHHHHH
Confidence 112445554444321 1 24678999999996 6666667776665
No 115
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.30 E-value=0.0099 Score=62.49 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=43.5
Q ss_pred CChHHHHHHHhhhhc--CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 132 VPTEVQSAAIPSILK--NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~--~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
.+|..|.+++..+.. ....++.|+-|.|||.+..+.+.... ..++|.+|+..-+..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-------------------~~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-------------------GRAIVTAPAKASTDVL 233 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-------------------SCEEEECSSCCSCHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-------------------hCcEEECCCHHHHHHH
Confidence 679999999988876 34579999999999977666655443 1269999998866543
No 116
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.13 E-value=0.034 Score=55.64 Aligned_cols=54 Identities=9% Similarity=0.193 Sum_probs=35.7
Q ss_pred CCeeEEEEechhhhh---ccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc
Q 008602 266 HGCRFLVLDEIDELL---SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336 (560)
Q Consensus 266 ~~l~llIiDE~h~l~---~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 336 (560)
.+.+++|||++-++. +..+...+..+...+. +..-++.++|+...+....+..|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~-----------------pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK-----------------PDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC-----------------CSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC-----------------CcceEEEEeCccchHHHHHHHHH
Confidence 467899999998643 3345666666665552 45567888888766655555544
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.09 E-value=0.04 Score=53.23 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
+..++++||+|+|||..+-..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i 57 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAA 57 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 367999999999999875433
No 118
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.98 E-value=0.0069 Score=65.25 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=56.3
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.+++.|.+|+... +..++|.|..|||||.+.+.-+...+... .....++++++.|+..|.++.+++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~------------~~~~~~IL~lTfT~~Aa~em~~Rl 67 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC------------GYQARHIAAVTFTNKAAREMKERV 67 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHH------------CCCGGGEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhc------------CCCHHHeEEEeccHHHHHHHHHHH
Confidence 4689999999863 56899999999999998776665554110 012356999999999999999999
Q ss_pred HHHhCC
Q 008602 212 KKLLGP 217 (560)
Q Consensus 212 ~~~~~~ 217 (560)
.+.++.
T Consensus 68 ~~~l~~ 73 (673)
T 1uaa_A 68 GQTLGR 73 (673)
T ss_dssp HHHSCT
T ss_pred HHHcCc
Confidence 988764
No 119
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.94 E-value=0.012 Score=63.75 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=56.1
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.+++.|.+|+... +..++|.|..|||||.+...-+...+... .....++|+++.|+..|.++.+++
T Consensus 11 ~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~------------~~~p~~IL~vTFTnkAA~Em~~Rl 76 (724)
T 1pjr_A 11 HLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEK------------HVAPWNILAITFTNKAAREMRERV 76 (724)
T ss_dssp TSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTT------------CCCGGGEEEEESSHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhc------------CCCHHHeEEEeccHHHHHHHHHHH
Confidence 6789999999863 46899999999999998776666655210 122356999999999999999999
Q ss_pred HHHhC
Q 008602 212 KKLLG 216 (560)
Q Consensus 212 ~~~~~ 216 (560)
...++
T Consensus 77 ~~~l~ 81 (724)
T 1pjr_A 77 QSLLG 81 (724)
T ss_dssp HHHHG
T ss_pred HHHhc
Confidence 88764
No 120
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.12 Score=49.32 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+.++++.||+|+|||.++-. ++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 36799999999999988544 44444
No 121
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.80 E-value=0.016 Score=66.74 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=57.7
Q ss_pred CChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 132 VPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 132 ~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
.+|+-|.++|..- +.+++|.|..|||||.+.+.-++..+.... ......+++++++|+..|..+.+++
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~----------~~~~~~~il~~Tft~~aa~e~~~ri 77 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE----------NPIDVDRLLVVTFTNASAAEMKHRI 77 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS----------SCCCGGGEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC----------CCCCccceEEEeccHHHHHHHHHHH
Confidence 6799999999864 779999999999999998777777663211 0123457999999999999999998
Q ss_pred HHHh
Q 008602 212 KKLL 215 (560)
Q Consensus 212 ~~~~ 215 (560)
...+
T Consensus 78 ~~~l 81 (1232)
T 3u4q_A 78 AEAL 81 (1232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.73 E-value=0.077 Score=49.73 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=16.6
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
..++++||+|+|||..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 57999999999999885443
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.69 E-value=0.038 Score=52.27 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=32.0
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHH-HHHHhh--hhcCCcEEEEcCCCchHHHHHHH
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQ-SAAIPS--ILKNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q-~~ai~~--i~~~~~~li~~~TGsGKT~~~~~ 166 (560)
+...|+++.-.+...+.+...-. .+.+ ...+.. +.....+++.||+|+|||..+-.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 34557887666666655543311 1111 111111 23457899999999999987543
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.50 E-value=0.14 Score=45.73 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.2
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
..++++||+|+|||..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 35999999999999875443
No 125
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.47 E-value=0.049 Score=54.19 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+.+|+.||+|+|||..+-..
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 478999999999999875443
No 126
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.41 E-value=0.051 Score=52.78 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=26.6
Q ss_pred hHHHHHHHhhhh----cC---CcEEEEcCCCchHHHHHHHHHHh
Q 008602 134 TEVQSAAIPSIL----KN---HDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 134 ~~~Q~~ai~~i~----~~---~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
.|+|..++..+. ++ +..++.||.|+|||..+...+-.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 577777766554 33 34899999999999886655543
No 127
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.36 E-value=0.31 Score=42.27 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=17.0
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
..++++|++|+|||..+...+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 679999999999998754433
No 128
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.25 E-value=0.17 Score=51.21 Aligned_cols=53 Identities=15% Similarity=-0.019 Sum_probs=35.4
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
..|.-++|+|++|+|||..++..+..... ..|..|+++... .-..|+..++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~---------------~~g~~vl~~slE-~~~~~l~~R~~~ 250 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAAL---------------KEGVGVGIYSLE-MPAAQLTLRMMC 250 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH---------------TTCCCEEEEESS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------------hCCCeEEEEECC-CCHHHHHHHHHH
Confidence 34567899999999999988777776651 124457777653 334566666543
No 129
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.22 E-value=0.15 Score=51.60 Aligned_cols=58 Identities=9% Similarity=-0.033 Sum_probs=33.2
Q ss_pred cccCCcccCCCCHHHHHHHHhCCCCCChHHHHH-HH-hhhhcCCcEEEEcCCCchHHHHHHHH
Q 008602 107 FAANSFLELGLPPLLLERLEREGFNVPTEVQSA-AI-PSILKNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~-ai-~~i~~~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+...|+++.-.+...+.+...- .+|.+.. .+ ......+.+|+.||+|+|||..+-..
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v---~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ai 187 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAV---ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV 187 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---THHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH---HHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 45567888876666666555321 0111100 00 01122467999999999999875433
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.18 E-value=0.092 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
+..++++||+|+|||..+-..+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4679999999999998754433
No 131
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.18 E-value=0.079 Score=51.10 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=33.7
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhh-----cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-----KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~-----~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+...|.++.-.+...+.+...-. +|.. .+.+. ..+.++++||+|+|||..+- .+...+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la~-aia~~~ 75 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLAK-AVATEA 75 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHHH-HHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHHH-HHHHHH
Confidence 34558888766666666654311 1211 11111 23579999999999998754 333333
No 132
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.16 E-value=0.041 Score=50.27 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.+..++++||+|+|||..+...+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35789999999999998754433
No 133
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.12 E-value=0.22 Score=43.04 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~ 169 (560)
...++++||+|+|||..+...+-
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 46799999999999987654443
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.11 E-value=0.063 Score=53.20 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=17.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++++||+|+|||..+- .+...+
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 69999999999998754 344444
No 135
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.99 E-value=0.13 Score=51.42 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=31.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEc--cCHHHHHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA--PSRELGMQIVREIKK 213 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~--Pt~~La~Q~~~~~~~ 213 (560)
..++++|++|+|||+.+.-.+.... ..|.+++++. |.|.-+.++...+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~----------------~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ----------------KRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH----------------TTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH----------------HCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 3578999999999998766655443 3355566655 455555444444433
No 136
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.87 E-value=0.081 Score=51.01 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=19.1
Q ss_pred CCeeEEEEechhhhhccchHHHHHHHHHH
Q 008602 266 HGCRFLVLDEIDELLSFNFREAMHRIVEH 294 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~~~~~~l~~i~~~ 294 (560)
...++|||||+|.+.+......+..+++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 35789999999986523444455555544
No 137
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.73 E-value=0.26 Score=47.25 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=39.1
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhC
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 216 (560)
+..|.-++|+|++|+|||..++..+.... ..+..+++++.. .-..|+..++.....
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a----------------~~g~~vl~~slE-~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMS----------------DNDDVVNLHSLE-MGKKENIKRLIVTAG 120 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHH----------------TTTCEEEEEESS-SCHHHHHHHHHHHHT
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH----------------HcCCeEEEEECC-CCHHHHHHHHHHHHc
Confidence 44567899999999999988887777665 223457777654 445666666665433
No 138
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.70 E-value=0.17 Score=51.07 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~ 165 (560)
...++++||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999998754
No 139
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.53 E-value=0.21 Score=50.68 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=34.1
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREI 211 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~ 211 (560)
+..|.-++|.|++|+|||..++..+..... ..|..|+++...- -..|+..++
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~---------------~~g~~Vl~~s~E~-s~~~l~~r~ 251 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVAT---------------KTNENVAIFSLEM-SAQQLVMRM 251 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHH---------------HSSCCEEEEESSS-CHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------hCCCcEEEEECCC-CHHHHHHHH
Confidence 334577899999999999987777766541 1244577776432 235555554
No 140
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.53 E-value=0.041 Score=53.18 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=37.7
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
+..|.-++|.|++|+|||..++..+.... ..+..|++++.- .-..|+..++...
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a----------------~~g~~Vl~fSlE-ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSAL----------------NDDRGVAVFSLE-MSAEQLALRALSD 96 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHH----------------HTTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH----------------HcCCeEEEEeCC-CCHHHHHHHHHHH
Confidence 44567789999999999998877777665 235567877653 3356666665443
No 141
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.22 E-value=0.12 Score=45.46 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=31.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccC
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPS 200 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt 200 (560)
-.+++..+.|.|||.+++-.++.++ ..|.+|+|+.-.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~----------------g~G~rV~~vQF~ 65 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV----------------GHGKNVGVVQFI 65 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH----------------HTTCCEEEEESS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH----------------HCCCeEEEEEee
Confidence 4788999999999999999999998 668889999533
No 142
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.04 E-value=0.3 Score=47.00 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=22.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.|.-+++.|++|+|||..++..+....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 357789999999999998877776644
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.94 E-value=0.081 Score=52.32 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.8
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
..++++||+|+|||..+...+
T Consensus 46 ~~vll~G~~G~GKT~la~~l~ 66 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIF 66 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 569999999999998754433
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.65 E-value=0.48 Score=42.82 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.+++.||+|+|||..+...+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998754443
No 145
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.60 E-value=0.23 Score=46.15 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~ 165 (560)
.+..++++|++|+|||..+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 46789999999999998743
No 146
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.47 E-value=0.18 Score=54.75 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=65.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-cccCCCCCCCCEEE
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-SARGLDVAECDLVV 486 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-~~~Gidip~v~~VI 486 (560)
.+.+++|.+|++.-+.+.+..+.+. ++++..+||+++..++...++.+.+|+.+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 3679999999999888887777653 789999999999999999999999999999999963 45677888898888
Q ss_pred E
Q 008602 487 N 487 (560)
Q Consensus 487 ~ 487 (560)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 3
No 147
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.31 E-value=0.27 Score=48.03 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+.+|++||+|+|||+.+- .+...+
T Consensus 84 ~~~iLL~GppGtGKT~la~-ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK-AVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCcHHHHHH-HHHHHh
Confidence 3679999999999998854 333433
No 148
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.28 E-value=0.33 Score=49.41 Aligned_cols=73 Identities=10% Similarity=0.027 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcccCCCCCC
Q 008602 402 DTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAE 481 (560)
Q Consensus 402 ~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~~Gidip~ 481 (560)
..|.+.+.. .++++++.+.+....+++.+.|.+.++.+....+. . .+..| .|.++..-++.|.-+|+
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EASDR--GRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCCTT--CEEEEESCCCSCEEETT
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcCCC--cEEEEEcccccCcccCC
Confidence 445555532 25789999999999999999999888765443321 0 12334 45666677899999998
Q ss_pred CCEEEE
Q 008602 482 CDLVVN 487 (560)
Q Consensus 482 v~~VI~ 487 (560)
..++|.
T Consensus 439 ~klaVI 444 (483)
T 3hjh_A 439 RNLALI 444 (483)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 888874
No 149
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.03 E-value=0.33 Score=49.61 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~ 165 (560)
...+|+.||+|+|||+.+-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 4679999999999999754
No 150
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.88 E-value=0.48 Score=48.92 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=16.6
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
+.++++||+|+|||..+...
T Consensus 78 ~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999875433
No 151
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.87 E-value=0.16 Score=49.54 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.|.-++|.|+.|+|||..++..+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457799999999999998887776655
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.86 E-value=0.24 Score=47.90 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
..+++.||+|+|||..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 57999999999999875443
No 153
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.83 E-value=0.33 Score=46.02 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=21.4
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+..|.-++|.|++|+|||..+...+...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4457789999999999998765555443
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.79 E-value=0.43 Score=45.71 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=15.9
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
.+++.||+|+|||..+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 6999999999999875443
No 155
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.78 E-value=0.59 Score=47.08 Aligned_cols=54 Identities=13% Similarity=0.001 Sum_probs=37.9
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
+..|.-++|.|++|+|||..++..+.... ..|..+++++.- .-..|+..++...
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a----------------~~g~~vl~fSlE-ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMS----------------DNDDVVNLHSLE-MGKKENIKRLIVT 247 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHH----------------HTTCEEEEECSS-SCTTHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHH----------------HcCCEEEEEECC-CCHHHHHHHHHHH
Confidence 33457789999999999999888887766 225568887754 3345666665443
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.77 E-value=0.44 Score=46.82 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
+..+++.|++|+|||..+-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999987544
No 157
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.53 E-value=0.13 Score=51.98 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~ 166 (560)
..++++||+|+|||..+-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 4699999999999987543
No 158
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.24 E-value=0.43 Score=43.42 Aligned_cols=29 Identities=14% Similarity=-0.068 Sum_probs=22.2
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..|.-+++.||+|+|||..+...+...+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 49 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQ 49 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHh
Confidence 33467889999999999998776665433
No 159
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.94 E-value=0.71 Score=47.45 Aligned_cols=54 Identities=7% Similarity=-0.088 Sum_probs=36.7
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
+..|.-++|.|++|+|||..++..+..... ..|..++++.-- .-..|+..++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~---------------~~g~~vl~~s~E-~s~~~l~~r~~~ 292 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGT---------------AMGKKVGLAMLE-ESVEETAEDLIG 292 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTT---------------TSCCCEEEEESS-SCHHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHH---------------hcCCcEEEEecc-CCHHHHHHHHHH
Confidence 334577899999999999988888777651 124557777643 334566666543
No 160
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.77 E-value=0.77 Score=44.38 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.7
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 008602 150 VVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i 168 (560)
+++.||.|+|||..+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999998754443
No 161
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.56 E-value=0.44 Score=47.57 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=64.0
Q ss_pred cCCCeEEEEEcChhhHHHHHHHHHH---CCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCcc----cCCCCCCCC
Q 008602 411 LDAQTVIAFMNNTRQLKDAVFKLEA---RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSA----RGLDVAECD 483 (560)
Q Consensus 411 ~~~~~~iif~~~~~~~~~~~~~L~~---~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~~----~Gidip~v~ 483 (560)
..+.+++|.+|++.-+.+.+..+++ .++++..+||+.+..++...++.+..|+.+|+|+|.-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3578999999999999999999988 578999999999999988888999999999999996321 125556788
Q ss_pred EEEE
Q 008602 484 LVVN 487 (560)
Q Consensus 484 ~VI~ 487 (560)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8873
No 162
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.48 E-value=0.63 Score=45.22 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=19.2
Q ss_pred CCeeEEEEechhhhhccchHHHHHHHHHH
Q 008602 266 HGCRFLVLDEIDELLSFNFREAMHRIVEH 294 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~~~~~~l~~i~~~ 294 (560)
.+.+++|+||+|. ++......+.++++.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEK 160 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence 3568999999998 565555555555554
No 163
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.24 E-value=0.96 Score=43.35 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
|.-++|.|++|+|||..++..+...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999888777654
No 164
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.94 E-value=0.68 Score=39.29 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=53.1
Q ss_pred eeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 192 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
.++||.++++..+..+++.+... ...+..+.|+..... ....+.++...|+|+| ..+.. .+++.++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~-----Gld~~~~ 104 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-DVAAR-----GIDIENI 104 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GGGTT-----TCCCSCC
T ss_pred CcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-Chhhc-----CCchhcC
Confidence 46999999999999999988774 223566777655433 3456667888999999 33332 5778888
Q ss_pred eEEEEech
Q 008602 269 RFLVLDEI 276 (560)
Q Consensus 269 ~llIiDE~ 276 (560)
+++|.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88886443
No 165
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.77 E-value=0.99 Score=42.84 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
++-++++|++|+|||+.....+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 345789999999999876555543
No 166
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.55 E-value=0.88 Score=45.00 Aligned_cols=26 Identities=8% Similarity=-0.107 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
|.-+.|+|+.|+|||..+...++...
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 36689999999999998765555443
No 167
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.44 E-value=1 Score=43.56 Aligned_cols=26 Identities=12% Similarity=-0.172 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
|.-++|.|++|+|||..++..+....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999998877776644
No 168
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.40 E-value=1.8 Score=37.82 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=52.2
Q ss_pred eeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 192 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
.++||.|+++.-+..+++.+... ...+..+.|+..... ....+.++..+|+|+| ..+.. .+++.++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-~~~~~-----Gldi~~v 123 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVASK-----GLDFPAI 123 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHHHT-----TCCCCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-Cchhc-----CCCcccC
Confidence 46999999999999999998775 223556777665443 3455667888999999 33333 6778888
Q ss_pred eEEEEe
Q 008602 269 RFLVLD 274 (560)
Q Consensus 269 ~llIiD 274 (560)
+++|.=
T Consensus 124 ~~VI~~ 129 (191)
T 2p6n_A 124 QHVINY 129 (191)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 888763
No 169
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.33 E-value=0.22 Score=41.44 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=17.9
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~ 165 (560)
..+..+++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456789999999999998754
No 170
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.23 E-value=0.95 Score=39.37 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=47.2
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCC---ChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA---NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||.|+++.-+..+++.+... ...+..+.|+. ........+.++...|+|+| ..+.. .+++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~-----Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-AVAAR-----GLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEE-C-----------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-Chhhc-----CCCcc
Confidence 3456999999999999999888764 22355555544 34455667778888999999 33433 56777
Q ss_pred CeeEEEE
Q 008602 267 GCRFLVL 273 (560)
Q Consensus 267 ~l~llIi 273 (560)
++++||.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 8888876
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.23 E-value=2.1 Score=42.29 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=16.2
Q ss_pred CcEEE--EcCCCchHHHHHHHHH
Q 008602 148 HDVVI--QSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li--~~~TGsGKT~~~~~~i 168 (560)
..++| +|+.|+|||..+...+
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHH
Confidence 46788 8999999998754443
No 172
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.17 E-value=0.19 Score=41.74 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=17.0
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
...+..+++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34567899999999999986
No 173
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.11 E-value=1.1 Score=38.07 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=53.0
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
+.++||.++++..+..++..+... ...+..+.++..... ....+.++...|+|+| ..+.. .+++.+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~-----G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-DLLAR-----GIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-GGGTT-----TCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-Chhhc-----CCCccc
Confidence 346999999999999999988774 223566777665433 3456667888999999 33322 567788
Q ss_pred eeEEEEech
Q 008602 268 CRFLVLDEI 276 (560)
Q Consensus 268 l~llIiDE~ 276 (560)
++++|.-+.
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888876443
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.04 E-value=0.35 Score=46.37 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
...++++||+|+|||..+-.
T Consensus 38 ~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 36899999999999987543
No 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.54 E-value=0.63 Score=44.41 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++++||.|+|||..+...+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 49999999999998754443
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.38 E-value=0.42 Score=42.17 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.1
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
..++++|++|+|||..+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 689999999999998754433
No 177
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.32 E-value=3 Score=37.21 Aligned_cols=25 Identities=24% Similarity=0.020 Sum_probs=19.2
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i 168 (560)
+..|.-+.++||+|+|||+.+...+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456778999999999998755444
No 178
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.05 E-value=1.6 Score=41.41 Aligned_cols=21 Identities=14% Similarity=-0.151 Sum_probs=16.6
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
...|+.||.|+|||..+...+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998755443
No 179
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=88.66 E-value=0.43 Score=41.00 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=45.7
Q ss_pred ChHHHHHHHhhhhcC--CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 133 PTEVQSAAIPSILKN--HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 133 ~~~~Q~~ai~~i~~~--~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
..+-|..++..++.. .-.+|.+.-|++||...+..++... +..|.+|.+|+|+..-+....
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a---------------~~~Gr~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA---------------REQGREVQIIAADRRSQMNMK 97 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH---------------HHTTCCEEEECSTTHHHHHHS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH---------------HhcCeEEEEEcCchHHHHHHH
Confidence 456799999988764 4577899999999998555554443 256888999999977655543
No 180
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.65 E-value=1.4 Score=37.83 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=52.1
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
+.++||.|+++..+..++..+... ...+..+.|+..... ....+.++..+|+|+|. .+ ...+++.+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-~~-----~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-VC-----ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-SC-----CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-ch-----hcCCCccc
Confidence 457999999999999998888763 223566777665443 34566778889999993 22 22567888
Q ss_pred eeEEEEe
Q 008602 268 CRFLVLD 274 (560)
Q Consensus 268 l~llIiD 274 (560)
+++||.-
T Consensus 103 ~~~Vi~~ 109 (175)
T 2rb4_A 103 VTIVVNF 109 (175)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 8888853
No 181
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.58 E-value=8.9 Score=36.64 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=21.0
Q ss_pred HHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHH
Q 008602 135 EVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 135 ~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~ 167 (560)
..+...+.. +....++|.|+.|+|||......
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~ 50 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIG 50 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHH
Confidence 333334433 33357899999999999875443
No 182
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.57 E-value=1.9 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=17.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++++||.|+|||..+... ...+
T Consensus 40 ~~ll~G~~G~GKT~la~~l-a~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLL-AKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHHh
Confidence 4799999999999875443 3434
No 183
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.28 E-value=0.37 Score=44.00 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=34.0
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIK 212 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~ 212 (560)
..|.-+++.|++|+|||..++..+...+ ..+..++++.-. ....++.+++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~----------------~~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGL----------------KMGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHH----------------HTTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH----------------hcCCeEEEEEcc-CCHHHHHHHHH
Confidence 3467889999999999998777666655 223457776643 33455555554
No 184
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.15 E-value=0.46 Score=56.36 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=32.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRE 202 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~ 202 (560)
++.++++||+|+|||..+...+.... ..|.+++++...-.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~----------------~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ----------------REGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH----------------TTTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH----------------HcCCcEEEEEcccc
Confidence 68899999999999999888887776 45677888886643
No 185
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.67 E-value=1.1 Score=45.89 Aligned_cols=46 Identities=24% Similarity=0.171 Sum_probs=29.2
Q ss_pred HHHhCCCCCChHHHHHHHhh-hhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 124 RLEREGFNVPTEVQSAAIPS-ILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 124 ~l~~~~~~~~~~~Q~~ai~~-i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+...|. +++.+...+.. +..+..++++||||||||+. +..++..+
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl-L~aL~~~i 284 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT-LNAIMMFI 284 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH-HHHHGGGS
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 3445553 23444444443 45678899999999999986 44455444
No 186
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.18 E-value=0.38 Score=48.02 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=39.6
Q ss_pred CcccCCcccCCCCHHHHHHHHhC---CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 106 PFAANSFLELGLPPLLLERLERE---GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 106 ~~~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..|...|++.+--+...+.+... ++..|--++...++ .-+.+|+.||+|+|||+.+ .++...+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA-kAiA~e~ 239 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA-RACAAQT 239 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH-HHHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH-HHHHHHh
Confidence 45677899998777777666543 22233333332222 2368999999999999874 3444444
No 187
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.01 E-value=5.5 Score=37.42 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
.++.+.++|+.|+|||+.+...+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556778899999999875555443
No 188
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.62 E-value=2.2 Score=37.90 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=51.9
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHH---HHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQ---EEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
+.++||.|+++.-+..+++.+... ...+..+.|+...... ...+.++..+|+|+|. .+. ..+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~-----~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-VAA-----RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-TTT-----CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-hhh-----cCCCCcc
Confidence 346999999999999999998875 2235667777665443 4556778889999992 222 2567788
Q ss_pred eeEEEE
Q 008602 268 CRFLVL 273 (560)
Q Consensus 268 l~llIi 273 (560)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 189
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.49 E-value=1.7 Score=37.15 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=52.1
Q ss_pred eeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 192 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
.++||.|+++..+..+++.+... ...+..+.|+..... ....+.++...|+|+|. .+.. .+++.++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~-----Gldi~~~ 100 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-LFGR-----GMDIERV 100 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-CCST-----TCCGGGC
T ss_pred CcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-chhc-----CcchhhC
Confidence 46999999999999999998774 223556677665443 34556678889999993 2222 5677788
Q ss_pred eEEEEec
Q 008602 269 RFLVLDE 275 (560)
Q Consensus 269 ~llIiDE 275 (560)
++||.-+
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 8887643
No 190
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.99 E-value=2.2 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+.+|+.||.|+|||+.+ ..+...
T Consensus 239 ~GILL~GPPGTGKT~LA-raiA~e 261 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA-RAVANE 261 (806)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHTT
T ss_pred CeEEEECCCCCCHHHHH-HHHHHH
Confidence 67999999999999874 344333
No 191
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=85.75 E-value=1.2 Score=50.32 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=63.9
Q ss_pred cCCCeEEEEEcChhhHHHHHHHHHH---CCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-c----ccCCCCCCC
Q 008602 411 LDAQTVIAFMNNTRQLKDAVFKLEA---RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-S----ARGLDVAEC 482 (560)
Q Consensus 411 ~~~~~~iif~~~~~~~~~~~~~L~~---~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-~----~~Gidip~v 482 (560)
..+.+++|.+|++.-+.+++..+++ .++.+..+||+++..++...++.+.+|..+|+|+|.- + .. ++..++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 3578899999999999999999998 4678999999999988888999999999999999952 2 22 456678
Q ss_pred CEEEE
Q 008602 483 DLVVN 487 (560)
Q Consensus 483 ~~VI~ 487 (560)
++||.
T Consensus 198 ~~lVi 202 (1104)
T 4ddu_A 198 DFVFV 202 (1104)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88884
No 192
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=85.54 E-value=1.4 Score=50.20 Aligned_cols=76 Identities=11% Similarity=0.181 Sum_probs=64.6
Q ss_pred cCCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec-CcccCCCCCCCCEE
Q 008602 411 LDAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE-LSARGLDVAECDLV 485 (560)
Q Consensus 411 ~~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~-~~~~Gidip~v~~V 485 (560)
..+.+++|.+|+..-+.+....+.+. ++++..+++..+..++...++....|+.+|+|+|. .+...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 34679999999999888888887753 57889999999999999999999999999999994 55666888888887
Q ss_pred E
Q 008602 486 V 486 (560)
Q Consensus 486 I 486 (560)
|
T Consensus 730 I 730 (1151)
T 2eyq_A 730 I 730 (1151)
T ss_dssp E
T ss_pred E
Confidence 7
No 193
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.28 E-value=1.1 Score=39.59 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCCChHHHHHHHhhhhcC----CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 120 LLLERLEREGFNVPTEVQSAAIPSILKN----HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 120 ~l~~~l~~~~~~~~~~~Q~~ai~~i~~~----~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+.+.|.-.++ .+... ..++..++++ +.+++.||.|+|||..+ ..++..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 45666665555 45555 4455555554 35899999999999875 3344433
No 194
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.52 E-value=1.8 Score=44.60 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=55.4
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~ 471 (560)
.+.++|.+|.+.-+.+....|...++.+..+||+.+..++..++..+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 57899999999999999999999999999999999999999999999999999999995
No 195
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.25 E-value=0.79 Score=43.47 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=30.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
-++|.||.|+|||..++..+..... ...+..++++...-.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~--------------~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR--------------QYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH--------------HCTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh--------------cCCCceEEEEeccchh
Confidence 5789999999999998888777651 0125678888765554
No 196
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.10 E-value=0.44 Score=43.57 Aligned_cols=51 Identities=24% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKK 213 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~ 213 (560)
|.-++++|++|+|||..++..+...+. ..+..++++.-. .-..++.+++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~---------------~~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE---------------EYGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH---------------HHCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH---------------hcCCCceeeccc-CCHHHHHHHHHH
Confidence 467899999999999988877766431 223446666543 334566555543
No 197
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.06 E-value=1.9 Score=45.24 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=54.5
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHh--hcCCceEEEEec
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKF--KNGEVRVLVTNE 471 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F--~~g~~~iLvaT~ 471 (560)
.+.+||.+|.+.-+.+....|.+.++.+..++|+++..++..++..+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 67999999999999999999999999999999999999999888888 578999999997
No 198
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.89 E-value=4.3 Score=38.84 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=33.0
Q ss_pred eeEEEEechhhhh-ccchHHHHHHHHHHhccCCCCCCCCchhhhhhccCceEEEEEeeCChHHHHHHHHc
Q 008602 268 CRFLVLDEIDELL-SFNFREAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSW 336 (560)
Q Consensus 268 l~llIiDE~h~l~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 336 (560)
.+++++|.+-++- .......+..+...+ .++..++.+.++...+....++.+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral-----------------~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVT-----------------KPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHH-----------------CCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHh-----------------cCCCCEEEEecHHHHHHHHHHHHH
Confidence 4677888887532 234555565554444 255678888888877777766654
No 199
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.73 E-value=0.72 Score=46.41 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=31.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGM 205 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~ 205 (560)
...+++|.|+||||||......+...+ ..|..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~----------------~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGL----------------LRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHH----------------HTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHH----------------HCCCcEEEEeCCCchhH
Confidence 356899999999999997533333333 23556888888877754
No 200
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.54 E-value=1.3 Score=44.16 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=23.5
Q ss_pred HHHHHHhhhhc--CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 136 VQSAAIPSILK--NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 136 ~Q~~ai~~i~~--~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+..++..++. +.-++|+||||||||+. +..++..+
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 34445544433 44678999999999986 44455554
No 201
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.53 E-value=0.98 Score=40.16 Aligned_cols=35 Identities=29% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHH
Q 008602 130 FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 130 ~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~ 164 (560)
+..-+.-|..++..+..|.-+.+.||.|+|||+..
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33445567788998989999999999999999863
No 202
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=82.39 E-value=5 Score=35.57 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=54.6
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHC-----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-c-----ccCCCCCC
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEAR-----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-S-----ARGLDVAE 481 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~-----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-~-----~~Gidip~ 481 (560)
+.+++|.++++.-+.+..+.+++. +..+..++|+.+..++... +..+..+|+|+|.- + ...++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999888887764 6789999999887665544 34577899999952 1 23467778
Q ss_pred CCEEEE
Q 008602 482 CDLVVN 487 (560)
Q Consensus 482 v~~VI~ 487 (560)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888884
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.28 E-value=0.61 Score=44.27 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=30.7
Q ss_pred cCCcccCCCCHHHHHHHHhCCCCCChHHH--HHHHh-hhhcCCcEEEEcCCCchHHHHHH
Q 008602 109 ANSFLELGLPPLLLERLEREGFNVPTEVQ--SAAIP-SILKNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 109 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q--~~ai~-~i~~~~~~li~~~TGsGKT~~~~ 165 (560)
...|+++.-.+...+.+...- .+|.. ..... .+..++.++++||+|+|||+.+-
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v---~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELV---QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 455888766666555554320 01110 00111 12345789999999999998754
No 204
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.17 E-value=0.63 Score=40.83 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
++-++++||||+|||..++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999998755443
No 205
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=82.13 E-value=6.6 Score=35.74 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=54.1
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-----cc--cCCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-----SA--RGLDVA 480 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-----~~--~Gidip 480 (560)
.+.+++|.++++.-+.+..+.+++. ++.+..++|+.+...+...+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4567999999999888888777664 78889999998876654443 256899999952 22 457788
Q ss_pred CCCEEEE
Q 008602 481 ECDLVVN 487 (560)
Q Consensus 481 ~v~~VI~ 487 (560)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 8888873
No 206
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.93 E-value=0.97 Score=43.33 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=31.8
Q ss_pred cCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhh-----cCCcEEEEcCCCchHHHHHHHHH
Q 008602 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL-----KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 109 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~-----~~~~~li~~~TGsGKT~~~~~~i 168 (560)
...|++++-.+...+.+...- .+|.+ .+.+. ..+.+++.||+|+|||..+-..+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHHHHH
Confidence 456888876666665554320 01111 11121 23679999999999998754433
No 207
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.86 E-value=2.2 Score=39.28 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCCCChHHHHH-HHhhhhcCC-----cEEEEcCCCchHHHHHHHHH
Q 008602 119 PLLLERLEREGFNVPTEVQSA-AIPSILKNH-----DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 119 ~~l~~~l~~~~~~~~~~~Q~~-ai~~i~~~~-----~~li~~~TGsGKT~~~~~~i 168 (560)
..+.+.|+-.|+. |.+.. ++..+++++ .+++.||.|+|||+.+...+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala 125 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3677888888884 44422 244555542 48999999999999866333
No 208
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=81.83 E-value=9.7 Score=37.42 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChh---HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS---RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||.++++..+..+++.+.+. ...+..+.++.... .....+.++..+|+|+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~-----~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAA-----RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-HHH-----TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hhh-----cCCCcc
Confidence 4667999999999999999998774 22355666666543 345556678889999993 222 267788
Q ss_pred CeeEEEE
Q 008602 267 GCRFLVL 273 (560)
Q Consensus 267 ~l~llIi 273 (560)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8898875
No 209
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.59 E-value=1 Score=44.59 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=36.0
Q ss_pred cccCCcccCCCCHHHHHHHHhC---CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 107 FAANSFLELGLPPLLLERLERE---GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+...|++.+=-+...+.+... .+..|--++...++ .-+.+|+.||+|+|||+.+- ++...+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLAk-AiA~e~ 240 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLAK-AVANQT 240 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHHH-HHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHHH-HHHHHh
Confidence 4567799987555555555432 22233333322222 23679999999999999743 333333
No 210
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.49 E-value=0.93 Score=44.61 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=36.6
Q ss_pred cccCCcccCCCCHHHHHHHHhC---CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 107 FAANSFLELGLPPLLLERLERE---GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.|...|++.+=-+...+.+... ++..|--++... +..-+.+|+.||+|+|||+.+ .++...+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA-kAiA~e~ 206 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA-RAVAHHT 206 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH-HHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH-HHHHHhh
Confidence 3567899987666666656543 122222222222 122368999999999999974 3444433
No 211
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=81.47 E-value=17 Score=35.95 Aligned_cols=26 Identities=23% Similarity=0.089 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+..++++|+.|+|||+.....+....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34577889999999988665554443
No 212
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=81.43 E-value=0.86 Score=39.39 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~ 166 (560)
.|+-++++||+|+|||+..-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 466789999999999987443
No 213
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=81.35 E-value=0.85 Score=40.14 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.++.++++|++|||||+++-..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999854443
No 214
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.33 E-value=1.4 Score=43.57 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=30.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
.+.+++|+|+||+|||...-..+.... ..+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~----------------~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY----------------MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH----------------TTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH----------------HCCCEEEEEeCCcCH
Confidence 567899999999999987655554444 345668888887653
No 215
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.23 E-value=0.93 Score=39.03 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=18.6
Q ss_pred hcCCcEEEEcCCCchHHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~ 167 (560)
..++.++++|++|||||.++-..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHH
Confidence 45678999999999999985543
No 216
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.06 E-value=0.79 Score=43.94 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.2
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
+-++|+||||+|||..+...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458899999999999865554
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=80.36 E-value=13 Score=37.72 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=18.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.++++|.+|+|||+.+...+....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999998666655443
No 218
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=80.32 E-value=2.3 Score=41.36 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~ 167 (560)
....+++.||+|+|||..+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3468999999999999975433
No 219
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=80.19 E-value=0.72 Score=39.30 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=16.2
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
+-++++|++|||||+++-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35789999999999986544
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=80.09 E-value=0.97 Score=40.62 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=20.6
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+..|.-+++.|++|+|||..+...+...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3346788999999999998765555343
No 221
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=80.01 E-value=1 Score=38.98 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
.+.++++|++|||||+++-..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999865544
No 222
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=79.64 E-value=1.3 Score=42.57 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.5
Q ss_pred hhhhcCCcEEEEcCCCchHHHHHH
Q 008602 142 PSILKNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 142 ~~i~~~~~~li~~~TGsGKT~~~~ 165 (560)
..+..+..+++.||+|+|||..+-
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 345567899999999999998754
No 223
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.56 E-value=0.95 Score=41.68 Aligned_cols=20 Identities=30% Similarity=0.024 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
-++|+|++|||||..+...+
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 36899999999999865443
No 224
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.47 E-value=1.6 Score=41.48 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
+..+++.||+|+|||..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 578999999999999875433
No 225
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=79.45 E-value=0.95 Score=42.76 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=16.2
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
-++|+||||+|||..+...+
T Consensus 12 ~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 47889999999998865554
No 226
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=79.44 E-value=11 Score=40.03 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=56.4
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||.|+|+..+..+++.+.+. + ..+..+.++..... ....+..|..+|+|||. .+ ...+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----g-i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-~l-----~~GlDip 506 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----G-IRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-LL-----REGLDIP 506 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----T-CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-CC-----CTTCCCT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----C-CCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-hh-----hcCccCC
Confidence 4568999999999999999888774 2 23455666654433 34446778899999992 22 2257788
Q ss_pred CeeEEEEechhh
Q 008602 267 GCRFLVLDEIDE 278 (560)
Q Consensus 267 ~l~llIiDE~h~ 278 (560)
+++++|+=+++.
T Consensus 507 ~v~lVI~~d~d~ 518 (664)
T 1c4o_A 507 EVSLVAILDADK 518 (664)
T ss_dssp TEEEEEETTTTS
T ss_pred CCCEEEEeCCcc
Confidence 899999988874
No 227
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.36 E-value=0.96 Score=42.82 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=16.2
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
-++|+||||+|||..+...+
T Consensus 5 ~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 47889999999998865554
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=79.35 E-value=1.3 Score=43.14 Aligned_cols=27 Identities=30% Similarity=0.124 Sum_probs=22.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+.-++|.|++|+|||..++..+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457789999999999999888777665
No 229
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.35 E-value=0.92 Score=42.00 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.7
Q ss_pred hhcCCcEEEEcCCCchHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~ 164 (560)
+..|.-++++||||||||+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 556778999999999999863
No 230
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=79.08 E-value=5.6 Score=38.24 Aligned_cols=75 Identities=7% Similarity=0.178 Sum_probs=53.1
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChh---HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS---RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||.++++.-+..+++.+.+. ...+..+.++.... .....+.++..+|+|+|. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~-----Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSR-----GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHH-----HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhc-----CCCcc
Confidence 3456999999999999999998874 22355666665543 344566778889999993 3333 56777
Q ss_pred CeeEEEEec
Q 008602 267 GCRFLVLDE 275 (560)
Q Consensus 267 ~l~llIiDE 275 (560)
+++++|.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 888888643
No 231
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.05 E-value=0.97 Score=45.23 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=37.3
Q ss_pred cccCCcccCCCCHHHHHHHHhC---CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 107 FAANSFLELGLPPLLLERLERE---GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.|...|++.+--+...+.+... .+..|--++... +..-+.+|+.||+|+|||+.+ .++...+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA-kAiA~e~ 267 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA-RAVANRT 267 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH-HHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH-HHHHhcc
Confidence 4567799987777777666543 111121222111 122478999999999999874 4444444
No 232
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=78.89 E-value=1.2 Score=38.24 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
++-++++|++|||||+++-..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 356889999999999985443
No 233
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.89 E-value=6.3 Score=35.59 Aligned_cols=72 Identities=10% Similarity=0.113 Sum_probs=54.0
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHH----CCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec-----Ccc-cCCCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEA----RGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE-----LSA-RGLDVAE 481 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~----~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~-----~~~-~Gidip~ 481 (560)
.+..++|.++++.-+.++.+.+++ .++.+..++|+.+...+...+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999988888776665 37889999999987776655543 478999995 222 3467888
Q ss_pred CCEEEE
Q 008602 482 CDLVVN 487 (560)
Q Consensus 482 v~~VI~ 487 (560)
+.++|.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888883
No 234
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=78.88 E-value=1.1 Score=39.41 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=17.9
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~ 166 (560)
..|+-+.++|++|||||+.+-.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4577789999999999987544
No 235
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=78.85 E-value=1.1 Score=39.66 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~ 167 (560)
.|.-++++||+|+|||...-..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 4567889999999999975443
No 236
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.73 E-value=0.91 Score=45.35 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=35.9
Q ss_pred cccCCcccCCCCHHHHHHHHhC---CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 107 FAANSFLELGLPPLLLERLERE---GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.|...|++.+--+...+.+... ++..|--++... +..-+.+|+.||+|+|||+.+- ++...+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk-AiA~e~ 239 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK-AVAATI 239 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH-HHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH-HHHHHh
Confidence 4567799987555555555432 121222222211 1223689999999999999843 444444
No 237
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.97 E-value=0.41 Score=41.00 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=48.2
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCC---hhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGAN---RSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
+.++||.|+++..+..+++.+... ...+..+.|+.. .......+.++..+|+|+| ..+.. .+++.+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~-----Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DVAAR-----GIDIPD 98 (170)
Confidence 456999999999999888888664 112334444433 3344556667788899999 33333 456666
Q ss_pred eeEEEEec
Q 008602 268 CRFLVLDE 275 (560)
Q Consensus 268 l~llIiDE 275 (560)
++++|.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 77776533
No 238
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=78.56 E-value=2.1 Score=41.56 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+..++|+||||||||+. +..++..+
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 445789999999999986 34444444
No 239
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.46 E-value=1.2 Score=39.29 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=19.0
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~ 167 (560)
+..++-++++|++|+|||+.+-..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHH
Confidence 445678999999999999975443
No 240
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=78.43 E-value=1 Score=43.64 Aligned_cols=41 Identities=27% Similarity=0.165 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSREL 203 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~L 203 (560)
|.-++|.||+|+|||..++..+.... ..+..++++.....+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~----------------~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ----------------KMGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH----------------HTTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH----------------hcCCeEEEEeccccc
Confidence 56789999999999988766665544 234457777655433
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=78.23 E-value=2.3 Score=43.35 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=22.2
Q ss_pred HHHHHhhhhcCCcEEEEcCCCchHHHHH
Q 008602 137 QSAAIPSILKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 137 Q~~ai~~i~~~~~~li~~~TGsGKT~~~ 164 (560)
-..++-.+..+.+++++||+|+|||..+
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3445555667889999999999999874
No 242
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.18 E-value=1 Score=44.93 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=35.7
Q ss_pred cccCCcccCCCCHHHHHHHHhC---CCCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 107 FAANSFLELGLPPLLLERLERE---GFNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.|...|++.+=-+...+.+... .+..|--++... +..-+.+|+.||+|+|||+.+ .++...+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la-kAiA~~~ 230 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV-KAVANST 230 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH-HHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH-HHHHHHh
Confidence 4567799987656655555432 111222222211 122367999999999999874 3444444
No 243
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=78.16 E-value=1.2 Score=43.35 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=20.3
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+..|..++++|+||||||+. +..++..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl-l~~l~~~ 198 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL-MKALMQE 198 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH-HHHHHTT
T ss_pred HhcCCEEEEECCCCCCHHHH-HHHHHhc
Confidence 45688999999999999986 3334333
No 244
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.12 E-value=1.6 Score=39.11 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+++.++.|+|||..++..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 588999999999999877776665
No 245
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=77.79 E-value=23 Score=37.45 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=56.7
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHH---HHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQ---EEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||.|+|+..+..+++.+.+. + ..+..+.++...... ...+..|..+|+|+|. .+ ...+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----g-i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-~l-----~~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----G-IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-LL-----REGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----T-CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-CC-----STTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----C-CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-hh-----hCCcccC
Confidence 4678999999999999999888774 2 224556666544333 3446678889999994 11 2357788
Q ss_pred CeeEEEEechhh
Q 008602 267 GCRFLVLDEIDE 278 (560)
Q Consensus 267 ~l~llIiDE~h~ 278 (560)
+++++|+-+++.
T Consensus 513 ~v~lVi~~d~d~ 524 (661)
T 2d7d_A 513 EVSLVAILDADK 524 (661)
T ss_dssp TEEEEEETTTTC
T ss_pred CCCEEEEeCccc
Confidence 999999999875
No 246
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=77.77 E-value=1.3 Score=38.31 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.++.++++|++|||||.++-..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999865443
No 247
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=77.76 E-value=1.3 Score=38.46 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
++.++++|+.|||||+++-..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999854433
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.70 E-value=1.6 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
.++.++++|++|+|||+.+...+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999976555544
No 249
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=77.34 E-value=5.2 Score=41.46 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=56.9
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||.|+|+.-+..+++.+.+.+.. ...+..+.++..... ....+.++..+|+|+|. . -...+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-~-----~~~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-V-----GARGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-G-----GTSSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-h-----hhcCCCcc
Confidence 4567999999999999999999887542 223556667655443 35566778899999994 1 22367888
Q ss_pred CeeEEEEech
Q 008602 267 GCRFLVLDEI 276 (560)
Q Consensus 267 ~l~llIiDE~ 276 (560)
++++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8998886553
No 250
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=77.30 E-value=1.6 Score=41.46 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~ 165 (560)
.+..++++|++|+|||..+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 45789999999999998743
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=77.29 E-value=1 Score=39.16 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=17.7
Q ss_pred hhcCCcEEEEcCCCchHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~ 165 (560)
+..|.-++++|++|||||+.+-
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 4456778999999999998743
No 252
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=77.18 E-value=11 Score=28.55 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=42.7
Q ss_pred EEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceE
Q 008602 416 VIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRV 466 (560)
Q Consensus 416 ~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~i 466 (560)
.++|...-.-+.++.+.++..|+++..++++...+.|.+.++.|.....++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 456777777888899999999999999999999999999999998765554
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=77.09 E-value=1.4 Score=38.72 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~ 165 (560)
.++-+.++||+|+|||+..-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778999999999998743
No 254
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.97 E-value=1.2 Score=42.13 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
+..++++||+|+|||..+-..
T Consensus 67 ~~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357999999999999886433
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.82 E-value=1.5 Score=37.25 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
++.++++|+.|||||+.+-.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45789999999999987433
No 256
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.76 E-value=1.3 Score=42.32 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++|+||||+|||..+...+
T Consensus 7 ~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999865544
No 257
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.71 E-value=1.4 Score=39.14 Aligned_cols=22 Identities=18% Similarity=0.004 Sum_probs=17.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~ 169 (560)
|.+++.||+||||++++-..+-
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999998766543
No 258
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.71 E-value=5 Score=37.65 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
...++++||+|+|||..+-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999987543
No 259
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=76.50 E-value=1.4 Score=38.65 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~ 166 (560)
.|.-+.+.||+|||||+..-.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 567788999999999987433
No 260
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=75.97 E-value=1.4 Score=42.35 Aligned_cols=20 Identities=35% Similarity=0.190 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
-++|+||||||||..+...+
T Consensus 9 lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHH
Confidence 47899999999999865544
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=75.94 E-value=1.5 Score=37.19 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=15.6
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
.++++|+.|||||+++-..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999985543
No 262
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.87 E-value=1.4 Score=40.50 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
...+++.||+|+|||..+-.
T Consensus 39 ~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999987543
No 263
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=75.78 E-value=1.5 Score=39.06 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.4
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++++|+.|||||+++-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999865543
No 264
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=75.71 E-value=6.7 Score=38.20 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=53.9
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCCh---hHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANR---SRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
+.++||.++++..+..+++.+.+. ...+..+.++... ......+.++...|+|+|. .+ ...+++.+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~-----~~Gidi~~ 318 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-LF-----GRGMDIER 318 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-CC-----SSCBCCTT
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-hh-----hcCCCccc
Confidence 467999999999999999998874 2225556666543 3345566778889999993 22 22567888
Q ss_pred eeEEEEechh
Q 008602 268 CRFLVLDEID 277 (560)
Q Consensus 268 l~llIiDE~h 277 (560)
++++|.-+.-
T Consensus 319 ~~~Vi~~~~p 328 (391)
T 1xti_A 319 VNIAFNYDMP 328 (391)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9998875543
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=75.62 E-value=1.5 Score=37.51 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=15.9
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
-++++|++|||||+.+-...
T Consensus 4 ~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 47899999999999865443
No 266
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=75.59 E-value=1.7 Score=38.22 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~ 166 (560)
..++-++++||+|+|||...-.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHH
Confidence 3567789999999999987443
No 267
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=75.46 E-value=1.8 Score=42.19 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=22.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+.-++|.|++|+|||..++..+....
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 356789999999999998877776655
No 268
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=75.38 E-value=1.2 Score=38.58 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.++.++++|+.|||||+++-..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999865443
No 269
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=75.33 E-value=1.5 Score=38.95 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=16.8
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
+.++++|+.|||||+++-..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999865543
No 270
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=74.90 E-value=1.7 Score=38.19 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=18.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+-.+++|+.|||||..+...+...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 357899999999999876655443
No 271
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=74.86 E-value=1.5 Score=41.18 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=30.6
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHHH-HHHhhh-hcCCcEEEEcCCCchHHHHHHH
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQS-AAIPSI-LKNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~-~ai~~i-~~~~~~li~~~TGsGKT~~~~~ 166 (560)
+...|+++.-.+...+.+...-. .|... +.+..+ ...+.+++.||+|+|||..+-.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHH
Confidence 34457777656665555543210 11110 000111 1357899999999999987543
No 272
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=74.77 E-value=1.3 Score=42.62 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=20.1
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+..|..++++|+||||||+. +..+...
T Consensus 168 i~~g~~v~i~G~~GsGKTTl-l~~l~g~ 194 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY-IKSIMEF 194 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH-HHHGGGG
T ss_pred ccCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 44688999999999999984 3344433
No 273
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.68 E-value=3.8 Score=38.13 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.0
Q ss_pred hhhhcCCcEEEEcCCCchHHHHHHHHHHh
Q 008602 142 PSILKNHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 142 ~~i~~~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
.-+..|.-++|.|+.|+|||+.+...+..
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34556788999999999999987666653
No 274
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.35 E-value=1.6 Score=40.09 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~ 165 (560)
+.+++.||+|+|||..+-
T Consensus 46 ~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 569999999999998753
No 275
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=74.19 E-value=28 Score=29.99 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=51.5
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC-----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-----cc-cCCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR-----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-----SA-RGLDVA 480 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~-----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-----~~-~Gidip 480 (560)
.+.+++|.++++.-+.+..+.+.+. +..+..++|+.+..+....+ .+..+|+|+|.- +. ..++..
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3468999999999988888887664 56788899998765543322 356799999961 22 334677
Q ss_pred CCCEEEE
Q 008602 481 ECDLVVN 487 (560)
Q Consensus 481 ~v~~VI~ 487 (560)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888873
No 276
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.09 E-value=1.6 Score=40.02 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=29.2
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhhc--CCcEEEEcCCCchHHHHH
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSILK--NHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~~--~~~~li~~~TGsGKT~~~ 164 (560)
+...|+++.-.+.....+...-. .-....++..+-- .+.+++.||+|+|||..+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVE---FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHH---HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH---HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 34567777666655555543211 0001122222211 234999999999999864
No 277
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=73.99 E-value=20 Score=36.46 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=52.6
Q ss_pred eeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 192 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
.+.++++.+..-+..+++.+.+. .. .+..+.|+..... ....+.++..+|+|+|+..+.. .+++.++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~----~~-~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v 417 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNE----YD-KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNL 417 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT----CS-SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSE
T ss_pred CCeEEEEecHHHHHHHHHHHHHc----CC-CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccC
Confidence 33445555566666666666553 22 3566666665433 3556677888999999988887 8899999
Q ss_pred eEEEEechh
Q 008602 269 RFLVLDEID 277 (560)
Q Consensus 269 ~llIiDE~h 277 (560)
++||+....
T Consensus 418 ~~vi~~~~~ 426 (510)
T 2oca_A 418 HHVVLAHGV 426 (510)
T ss_dssp EEEEESSCC
T ss_pred cEEEEeCCC
Confidence 999998777
No 278
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.76 E-value=9.2 Score=33.26 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=53.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC--CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec-----Cc-ccCCCCCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR--GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE-----LS-ARGLDVAECD 483 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~--~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~-----~~-~~Gidip~v~ 483 (560)
.+.+++|.+|++.-+.+..+.+.+. ++++..++|+.+...+...+. ...+|+|+|. .+ ...++..+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999998876 467888999887655544432 2578999995 12 2346677888
Q ss_pred EEEE
Q 008602 484 LVVN 487 (560)
Q Consensus 484 ~VI~ 487 (560)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8873
No 279
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=73.62 E-value=1 Score=42.09 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=27.1
Q ss_pred ccCCcccCCCCHHHHHHHHhCCCCCChHHHH-HHHhhh--hcCCcEEEEcCCCchHHHHH
Q 008602 108 AANSFLELGLPPLLLERLEREGFNVPTEVQS-AAIPSI--LKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 108 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~-~ai~~i--~~~~~~li~~~TGsGKT~~~ 164 (560)
+...|++.+-.+.+.+.+...- .+|+.. .++..+ .-.+.+++.||.|+|||+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3456888876666666665431 122221 122221 11244999999999999874
No 280
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=73.48 E-value=1.2 Score=38.18 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~ 165 (560)
.|.-+.++|+.|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46678899999999998754
No 281
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=73.41 E-value=3.9 Score=42.73 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=57.5
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||.|+|+.-+..+++.+.+.+.. ...+..+.|+..... ....+.++..+|+|+|. . -...+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-~-----~~~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-V-----GARGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-G-----GTSSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-h-----hhcCCCcc
Confidence 3567999999999999999999887542 223556677655443 35566778899999994 1 22357788
Q ss_pred CeeEEEEechh
Q 008602 267 GCRFLVLDEID 277 (560)
Q Consensus 267 ~l~llIiDE~h 277 (560)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 89998876544
No 282
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=73.40 E-value=1.6 Score=37.93 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~ 166 (560)
+-++|+||.|+|||...-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~ 20 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4589999999999987433
No 283
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.36 E-value=1.7 Score=42.35 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
++.+++.||+|+|||..+.. +...+
T Consensus 70 ~~~vLl~GppGtGKT~la~~-la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG-MAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH-HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH-HHHHh
Confidence 35799999999999987544 44444
No 284
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=73.27 E-value=4.2 Score=40.78 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=44.8
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeE
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~l 270 (560)
+.+++|.||++.-+..+++.+++. ...+..+.| .........+.++..+|+|+|. .+ ...+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg-~~R~~~~~~F~~g~~~vLVaT~-v~-----e~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNR-KTFEREYPTIKQKKPDFILATD-IA-----EMGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCS-SSCC--------CCCSEEEESS-ST-----TCCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecc-hhHHHHHhhhcCCCceEEEECC-hh-----heeeccC-ceE
Confidence 568999999999999999999875 222444544 6777778888899999999993 11 1245677 788
Q ss_pred EE
Q 008602 271 LV 272 (560)
Q Consensus 271 lI 272 (560)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 285
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=73.24 E-value=2.8 Score=39.60 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=50.9
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
+.++||.|+++.-+..+++.+... ...+..++|+..... ....+.++..+|+|+|. .+ ...+++.+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-va-----~~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-VA-----ARGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-TT-----TCSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-hh-----hcCccccc
Confidence 456999999999999888888653 233566777655443 34566778889999992 22 22567788
Q ss_pred eeEEEE
Q 008602 268 CRFLVL 273 (560)
Q Consensus 268 l~llIi 273 (560)
+++||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888874
No 286
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=73.15 E-value=4 Score=40.14 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=52.9
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhH---HHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSR---QEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
+.++||.|+++.-+..+++.+.+. ...+..+.|+..... ....+.++..+|+|+|. .+ ...+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-VC-----ARGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GG-----TSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-cc-----ccCCCccC
Confidence 457999999999999999999875 223556666655443 35566778889999993 22 23678888
Q ss_pred eeEEEEe
Q 008602 268 CRFLVLD 274 (560)
Q Consensus 268 l~llIiD 274 (560)
+++||.-
T Consensus 335 ~~~Vi~~ 341 (412)
T 3fht_A 335 VSVVINF 341 (412)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998853
No 287
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=73.06 E-value=2.5 Score=36.50 Aligned_cols=23 Identities=30% Similarity=0.187 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.++.++++|+.|||||+.+-..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 35668899999999999855443
No 288
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=73.01 E-value=1.9 Score=37.74 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.++.++++|+.|||||+++-..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999855443
No 289
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=72.92 E-value=1.7 Score=40.97 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=17.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..+++.||+|+|||..+- .+...+
T Consensus 37 ~~lLl~GppGtGKT~la~-aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE-LVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHh
Confidence 468899999999998744 444444
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=72.90 E-value=2 Score=37.26 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=18.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i 168 (560)
..++.++++|+.|||||+++-..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999865443
No 291
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=72.83 E-value=1.9 Score=36.34 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=16.5
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
+.++++|+.|||||+++-...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357899999999999854443
No 292
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=72.81 E-value=2.3 Score=38.03 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.6
Q ss_pred hhcCCcEEEEcCCCchHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~ 164 (560)
+..|+-+.++||+|+|||+..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345788999999999999863
No 293
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=72.76 E-value=1.6 Score=42.69 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.3
Q ss_pred hhcCCcEEEEcCCCchHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~ 164 (560)
+..+..++++||||||||+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345677899999999999863
No 294
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=72.66 E-value=5.5 Score=39.76 Aligned_cols=55 Identities=22% Similarity=0.115 Sum_probs=43.1
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCc
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTP 251 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp 251 (560)
+.+++|.||++.-+..+++.+++. ...+..+.| .........+.+|..+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg-~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNR-KTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEEST-TTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCC-ccHHHHHHhhcCCCCeEEEECc
Confidence 457999999999999999999875 222444544 4666777888899999999993
No 295
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.55 E-value=9.6 Score=37.25 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=52.1
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChh---HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS---RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
+.++||.++++.-+..+++.+.+. ...+..+.++.... .....+.++..+|+|+|. .+ ...+++.+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-LL-----TRGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-CS-----SSSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-cc-----ccCCCccC
Confidence 457999999999999999999875 12255566665543 345566778889999993 22 22567888
Q ss_pred eeEEEEe
Q 008602 268 CRFLVLD 274 (560)
Q Consensus 268 l~llIiD 274 (560)
+++||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 8888753
No 296
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.53 E-value=6.1 Score=39.63 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=53.7
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEec--------C---CChhHHHHHHHcCCCcEEEeCchHHHHHH
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVG--------G---ANRSRQEEALRKNKPAIVVGTPGRIAEIS 258 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l 258 (560)
.+.++||.++++..+..+++.+.+. ...+..+.| + .+.......+.++...|+|+| ..+..
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-~~~~~-- 431 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-SVGEE-- 431 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-GGGGG--
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-Ccccc--
Confidence 3567999999999999999988875 122444555 2 234455667778888999999 33433
Q ss_pred HcCCccCCCeeEEEEechh
Q 008602 259 AAGKLHTHGCRFLVLDEID 277 (560)
Q Consensus 259 ~~~~~~~~~l~llIiDE~h 277 (560)
.+++..+++||+-+..
T Consensus 432 ---Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 ---GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp ---GGGSTTCCEEEESSCC
T ss_pred ---CCCchhCCEEEEeCCC
Confidence 5778888888865443
No 297
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=72.50 E-value=2 Score=36.30 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.2
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
+.+++.|..|||||+++-..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999865544
No 298
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=72.33 E-value=2.3 Score=36.75 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~ 165 (560)
+-+.+.||+|+|||+..-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457899999999998743
No 299
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=72.32 E-value=2.1 Score=37.53 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.5
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
+.++++|+.|||||+.+-..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999985443
No 300
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=72.21 E-value=1.4 Score=38.96 Aligned_cols=25 Identities=32% Similarity=0.155 Sum_probs=18.9
Q ss_pred hhhhcCCcEEEEcCCCchHHHHHHH
Q 008602 142 PSILKNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 142 ~~i~~~~~~li~~~TGsGKT~~~~~ 166 (560)
+.+..+.-+.|+|++|||||+.+-.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHH
Confidence 4445566788999999999987543
No 301
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=72.21 E-value=2.2 Score=36.38 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++++|+.|||||+++-..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58899999999999865443
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=72.03 E-value=2.2 Score=37.40 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~ 166 (560)
.+..++++|+.|||||+.+-.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356789999999999987443
No 303
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=71.84 E-value=2.4 Score=36.41 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=16.8
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
+.++++|+.|||||+++-..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 458899999999999865443
No 304
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=71.83 E-value=3.6 Score=50.70 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=34.6
Q ss_pred CHHHHHHHHhCCCCCChHHHHHHH----hhhhcCCcEEEEcCCCchHHHHHHHHH
Q 008602 118 PPLLLERLEREGFNVPTEVQSAAI----PSILKNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 118 ~~~l~~~l~~~~~~~~~~~Q~~ai----~~i~~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.+.+.+.+.+.++ .+++.+..-+ ..+..++.++++||||||||.++-..+
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 4456677777788 6666653322 334456889999999999999865443
No 305
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=71.78 E-value=6.4 Score=35.21 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=52.8
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC-----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-c-----ccCCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR-----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-S-----ARGLDVA 480 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~-----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-~-----~~Gidip 480 (560)
.+.+++|.++++.-+.+..+.+++. ++++..++|+.+..++...+ ...+|+|+|.- + ...++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4578999999999999988888764 57788999998876655443 35799999962 1 2345667
Q ss_pred CCCEEE
Q 008602 481 ECDLVV 486 (560)
Q Consensus 481 ~v~~VI 486 (560)
++++||
T Consensus 166 ~~~~lV 171 (230)
T 2oxc_A 166 SIRLFI 171 (230)
T ss_dssp GCCEEE
T ss_pred cCCEEE
Confidence 788777
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.70 E-value=1.9 Score=36.70 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
++.++++|+.|||||+.+-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999987543
No 307
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=71.62 E-value=2.2 Score=41.78 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
...++++||+|+|||..+-..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH
Confidence 467999999999999875433
No 308
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=71.61 E-value=1.9 Score=37.40 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=16.3
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
+.++++|++|||||+++-..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45789999999999986543
No 309
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=71.61 E-value=2.1 Score=37.93 Aligned_cols=25 Identities=24% Similarity=0.005 Sum_probs=20.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~ 169 (560)
..|.-+++.|++|+|||..+...+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457789999999999988766655
No 310
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=71.60 E-value=5.1 Score=42.56 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=50.4
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCee
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCR 269 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~ 269 (560)
.+.++||.||++.-+..+++.+++. ...+..+.+ .........+.++..+|+|+|. .+. ..+++. ++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg-~eR~~v~~~F~~g~~~VLVaTd-v~e-----~GIDip-v~ 475 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNR-KSYDTEYPKCKNGDWDFVITTD-ISE-----MGANFG-AS 475 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECS-SSHHHHGGGGGTCCCSEEEECG-GGG-----TTCCCC-CS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeCh-HHHHHHHHHHHCCCceEEEECc-hhh-----cceeeC-Cc
Confidence 3578999999999999998888764 222444444 6777777788889999999993 222 245666 77
Q ss_pred EEE
Q 008602 270 FLV 272 (560)
Q Consensus 270 llI 272 (560)
+||
T Consensus 476 ~VI 478 (673)
T 2wv9_A 476 RVI 478 (673)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 311
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=71.56 E-value=1.9 Score=42.33 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
-++|+||||+|||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 36899999999998865544
No 312
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=71.54 E-value=2.4 Score=35.96 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
+.++++|+.|||||.++-...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358899999999999865443
No 313
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=71.23 E-value=2.1 Score=38.01 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.+++.|+.|||||+++-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999865443
No 314
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=71.03 E-value=2.4 Score=37.80 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
++.+++.|+.|||||+++-..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999865443
No 315
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=70.91 E-value=8.7 Score=34.18 Aligned_cols=72 Identities=7% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC---CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec------CcccCCCCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR---GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE------LSARGLDVAEC 482 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~---~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~------~~~~Gidip~v 482 (560)
.+.+++|.++++.-+.++.+.++.. +..+..++|+.+..++...+ . ...+|+|+|. .....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4678999999999999999888874 67888889887655544333 2 3579999995 12345677888
Q ss_pred CEEEE
Q 008602 483 DLVVN 487 (560)
Q Consensus 483 ~~VI~ 487 (560)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88873
No 316
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=70.76 E-value=6.5 Score=35.39 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=46.1
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec-----Ccc-cCCCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE-----LSA-RGLDVAE 481 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~-----~~~-~Gidip~ 481 (560)
.+.+++|.++++.-+.+..+.+++. +..+..++|+.+.... ...+..+..+|+|+|. .+. ..++...
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999998888764 4667778887654332 3344567789999993 333 3466777
Q ss_pred CCEEEE
Q 008602 482 CDLVVN 487 (560)
Q Consensus 482 v~~VI~ 487 (560)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888873
No 317
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.70 E-value=2.8 Score=39.99 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
++-++++|++|+|||+.+...+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999876555443
No 318
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=70.49 E-value=2.3 Score=38.15 Aligned_cols=22 Identities=27% Similarity=0.101 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
.+.++++|++|||||+++-..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999864443
No 319
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=70.41 E-value=3.3 Score=39.06 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=16.8
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
..+++.||+|+|||..+-..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 368999999999998854443
No 320
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=70.30 E-value=5.5 Score=38.81 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=54.9
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChh---HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCC
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS---RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHG 267 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~ 267 (560)
+.++||.++++.-+..+++.+++. ...+..+.++.... .....+.++..+|+|+|. . -...+++.+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~-----~~~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-V-----LARGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-G-----GSSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-h-----hhcCCCccc
Confidence 467999999999999999998874 22355666665543 345666778889999993 1 223578888
Q ss_pred eeEEEEechh
Q 008602 268 CRFLVLDEID 277 (560)
Q Consensus 268 l~llIiDE~h 277 (560)
+++||.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9999875544
No 321
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=70.23 E-value=2.3 Score=36.82 Aligned_cols=21 Identities=14% Similarity=0.108 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
++-++++|+.|||||+++-..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 346889999999999985444
No 322
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.16 E-value=2.6 Score=36.89 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
++.++++|+.|||||+++-..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999855443
No 323
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=69.96 E-value=2.2 Score=39.78 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=28.7
Q ss_pred cCCcccCCCCHHHHHHHHhCCCCCChHHHHHHHhhhh--cCCcEEEEcCCCchHHHHH
Q 008602 109 ANSFLELGLPPLLLERLEREGFNVPTEVQSAAIPSIL--KNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 109 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~ai~~i~--~~~~~li~~~TGsGKT~~~ 164 (560)
...|+++.-.+.....+...-.. .. ...++..+- -.+.+++.||+|+|||+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 34577776666665555433110 00 011222211 1234999999999999874
No 324
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=69.73 E-value=2.9 Score=38.24 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+..++++|++|+|||+++-..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4889999999999999985443
No 325
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.68 E-value=13 Score=36.52 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=51.9
Q ss_pred eeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChh---HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCe
Q 008602 192 IEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS---RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGC 268 (560)
Q Consensus 192 ~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l 268 (560)
.++||.|+++.-+..+++.+.+. ...+..+.|+.... .....+.++..+|+|+|. .+ ...+++.++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~v 345 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-VW-----ARGLDVPQV 345 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-GG-----SSSCCCTTE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-hh-----hCcCCcccC
Confidence 47999999999999999888774 22355666665543 345566778889999994 22 235778888
Q ss_pred eEEEEe
Q 008602 269 RFLVLD 274 (560)
Q Consensus 269 ~llIiD 274 (560)
++||.-
T Consensus 346 ~~Vi~~ 351 (410)
T 2j0s_A 346 SLIINY 351 (410)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 988863
No 326
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.55 E-value=9.7 Score=47.64 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhCCCCCChHHHHHHHh----hhhcCCcEEEEcCCCchHHHHHHHH
Q 008602 117 LPPLLLERLEREGFNVPTEVQSAAIP----SILKNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 117 l~~~l~~~l~~~~~~~~~~~Q~~ai~----~i~~~~~~li~~~TGsGKT~~~~~~ 167 (560)
+...+.+.+.+.|+ .+++.+..=+- .+...+.++++||||+|||.++-..
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L 926 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY 926 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH
Confidence 34567777788888 67776644332 2334678999999999999986543
No 327
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.38 E-value=2.3 Score=41.28 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+.++++||+|+|||..+-..
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 468999999999999875443
No 328
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=69.33 E-value=2.4 Score=37.22 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~ 166 (560)
..+.-+.+.|+.|||||+.+-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3466788999999999987543
No 329
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.19 E-value=3.6 Score=39.57 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~ 166 (560)
.++++.||+|+|||..+-.
T Consensus 59 ~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4599999999999987543
No 330
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=69.11 E-value=1.4 Score=40.75 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+.+++.||+|+|||..+-..
T Consensus 44 ~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 356999999999999885443
No 331
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=69.03 E-value=3.1 Score=36.75 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=22.6
Q ss_pred hHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHH
Q 008602 134 TEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 134 ~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~ 166 (560)
++.+... ..+..++.++++|+.|||||+.+-.
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHH
Confidence 4444444 3345577889999999999987543
No 332
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=69.01 E-value=2.6 Score=36.84 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.5
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
.+++.|+.|||||+.+-..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 4789999999999975443
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.00 E-value=4.5 Score=38.22 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
+.-+.++|++|+|||+..-..
T Consensus 102 g~vi~lvG~nGsGKTTll~~L 122 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKL 122 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 567889999999999874433
No 334
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=69.00 E-value=2.5 Score=36.49 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++++|+.|||||+++-..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999865443
No 335
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=68.96 E-value=2.9 Score=36.89 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=17.0
Q ss_pred hhhcCCcEEEEcCCCchHHHHH
Q 008602 143 SILKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 143 ~i~~~~~~li~~~TGsGKT~~~ 164 (560)
.+..|.-+.+.||.|+|||+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5677888999999999999863
No 336
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=68.81 E-value=2.9 Score=37.33 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
.+.+++.|+.|||||+++-..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999865543
No 337
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=68.44 E-value=1.9 Score=38.83 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=13.7
Q ss_pred hhcCCcEEEEcCCCchHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~ 165 (560)
+..|.-+.++||+|+|||+..-
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp EECCCEEEEECSCC----CHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3456778899999999998743
No 338
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=68.38 E-value=2.6 Score=36.42 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=15.9
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++++|+.|||||+.+-...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999855443
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=68.18 E-value=4.3 Score=34.56 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~ 166 (560)
-+.++|+.|||||.....
T Consensus 6 ~i~i~G~sGsGKTTl~~~ 23 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEK 23 (169)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999986433
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=68.14 E-value=2.7 Score=36.61 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
++-++++|++|||||+++-..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999854443
No 341
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=68.02 E-value=2.9 Score=37.23 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
++.+++.|+.|||||+++-..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999865443
No 342
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.87 E-value=2.7 Score=42.45 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
++.+|+.||+|+|||..+. .+...+
T Consensus 63 ~~~iLl~GppGtGKT~la~-ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL-AIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH-HHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH-HHHHHh
Confidence 4679999999999998854 333444
No 343
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=67.86 E-value=16 Score=33.39 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=52.8
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec------Ccc-cCCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE------LSA-RGLDVA 480 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~------~~~-~Gidip 480 (560)
.+.+++|.+|++.-+.+..+.+++. +..+..++|+.........+ ..+ .+|+|+|. +.. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999998888774 56778888988766554433 334 89999994 222 357788
Q ss_pred CCCEEEE
Q 008602 481 ECDLVVN 487 (560)
Q Consensus 481 ~v~~VI~ 487 (560)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888873
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=67.85 E-value=2.5 Score=37.77 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
+.+-+++.||+||||++++-..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34567889999999999876554
No 345
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=67.79 E-value=3.4 Score=47.25 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=35.8
Q ss_pred EEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhC
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 216 (560)
.+|.|..|||||.+.+.-+...+.. ...+.+++++||... ..+..+++...++
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~-------------~~~~~~il~lVP~q~-TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRR-------------APFGKPIIFLVPDQM-TFLMEYELAKTPD 56 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHH-------------CTTSSCEEEECCGGG-HHHHHHHHTCCSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-------------CCCCCcEEEEecCcc-cHHHHHHHHHhhh
Confidence 4789999999999987777666521 123467999999764 3444555544443
No 346
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=67.56 E-value=2.6 Score=37.09 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.++-++++|+.|||||+++-..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 34568899999999999865443
No 347
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=67.53 E-value=14 Score=33.45 Aligned_cols=71 Identities=7% Similarity=0.083 Sum_probs=51.3
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-c-----ccCCCCCCC
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-S-----ARGLDVAEC 482 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-~-----~~Gidip~v 482 (560)
+.+++|.++++.-+.+..+.++.. ++.+..++|+.+...+...+ ....+|+|+|.- + ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999988888877664 46788889988765544333 346799999962 1 234577788
Q ss_pred CEEEE
Q 008602 483 DLVVN 487 (560)
Q Consensus 483 ~~VI~ 487 (560)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88873
No 348
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=67.39 E-value=2.8 Score=38.05 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=19.7
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i 168 (560)
+..|.-+.+.||+|+|||+.+...+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4457889999999999998755444
No 349
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=67.29 E-value=3 Score=36.02 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.1
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
-++++|++|+|||+.+-..
T Consensus 4 ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4678999999999975443
No 350
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=67.15 E-value=2.5 Score=36.17 Aligned_cols=21 Identities=24% Similarity=0.085 Sum_probs=13.2
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
++.++++|+.|||||+++-..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CCEEEEECCC----CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999986554
No 351
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=67.15 E-value=2.6 Score=39.48 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=16.2
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
.-++++|++|||||+.+-..
T Consensus 34 ~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45889999999999975544
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=67.13 E-value=3 Score=36.03 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++++|+.|||||+++-...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999865443
No 353
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=66.99 E-value=3.2 Score=37.35 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i 168 (560)
.+.+++.|++|||||+++-..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999865444
No 354
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=66.90 E-value=7.8 Score=39.46 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~ 169 (560)
.+.+++|.|.||||||...-..+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999987444443
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=66.89 E-value=2.9 Score=35.82 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~ 167 (560)
.++.++++|+.|||||+++-..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3566889999999999875433
No 356
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=66.85 E-value=3.2 Score=35.70 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q 008602 149 DVVIQSYTGSGKTLAY 164 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~ 164 (560)
.+.+.||.|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999863
No 357
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=66.75 E-value=2.5 Score=35.08 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHH
Q 008602 149 DVVIQSYTGSGKTLA 163 (560)
Q Consensus 149 ~~li~~~TGsGKT~~ 163 (560)
-.+|+||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999987
No 358
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=66.53 E-value=3.1 Score=37.25 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=16.2
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.+++.|+.|||||+++-..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999865443
No 359
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=66.50 E-value=3.1 Score=37.16 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.6
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
..+.+.|++|||||+++-..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999755443
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=66.41 E-value=3.2 Score=36.50 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.++-++++|+.|||||+++-...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999865444
No 361
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=66.40 E-value=4.2 Score=38.69 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHH
Q 008602 149 DVVIQSYTGSGKTLAY 164 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~ 164 (560)
-++|.|+.|+|||+..
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 4689999999999863
No 362
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=66.32 E-value=4.1 Score=40.71 Aligned_cols=25 Identities=20% Similarity=0.010 Sum_probs=19.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+.++++|+.|+|||+.+.-.+....
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577889999999998776665544
No 363
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=66.32 E-value=3.2 Score=36.32 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=15.5
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
.++++|+.|||||+++-..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999985433
No 364
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=66.01 E-value=3.8 Score=37.27 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
..+.++++|+.|||||+++-..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999865554
No 365
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=65.38 E-value=3.7 Score=39.73 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=18.7
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4556667765 57799999999987
No 366
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.38 E-value=3.5 Score=39.61 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~ 166 (560)
..+++.||+|+|||..+-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5799999999999987433
No 367
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=65.27 E-value=3.3 Score=36.27 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
.+.|+|+.|||||+.+-..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 4789999999999975443
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=65.18 E-value=3.6 Score=36.27 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i 168 (560)
.++-++++|+.|||||+++-..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999865544
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=65.14 E-value=4 Score=38.51 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~ 166 (560)
.+.-+.++|++|+|||+..-.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 355678999999999987443
No 370
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=64.85 E-value=5.9 Score=35.78 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHHhhh
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+.+++.-|.|||+++...+....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la 25 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA 25 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHH
Confidence 55689999999999887776655
No 371
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=64.83 E-value=10 Score=33.96 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=50.7
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-c----cc--CCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-S----AR--GLDVA 480 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-~----~~--Gidip 480 (560)
.+.+++|.+|++.-+.+..+.+++. ++.+..++|+.+.......+ +..+|+|+|.- + .. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4678999999999999988888775 37788899987665544333 46799999952 1 22 46677
Q ss_pred CCCEEEE
Q 008602 481 ECDLVVN 487 (560)
Q Consensus 481 ~v~~VI~ 487 (560)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 8888873
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=64.45 E-value=3.9 Score=36.51 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=16.4
Q ss_pred hhcCCcEEEEcCCCchHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~ 164 (560)
+..|.-++++||.|+|||+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 345677899999999999863
No 373
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=64.34 E-value=3.6 Score=36.09 Aligned_cols=19 Identities=37% Similarity=0.158 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
.+.+.|+.|||||+++-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999975444
No 374
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=64.32 E-value=2.6 Score=40.55 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
...+++.||+|+|||..+-.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 35699999999999987543
No 375
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=63.73 E-value=3 Score=41.63 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=19.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..++++|++|+|||+.+...+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999998666555443
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=63.68 E-value=3.9 Score=35.45 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
-+++.|+.|||||+++-...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999865543
No 377
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=63.55 E-value=4.5 Score=38.59 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=18.4
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 3445667765 57799999999987
No 378
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=63.41 E-value=8 Score=34.22 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=45.9
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecCc------ccCCCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELS------ARGLDVAE 481 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~~------~~Gidip~ 481 (560)
.+.+++|.++++.-+.+..+.+... +..+..++|+.+..++...+ . ..+|+|+|.-. ...++...
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999998888887764 67788899987655443322 2 37899999521 34566778
Q ss_pred CCEEEE
Q 008602 482 CDLVVN 487 (560)
Q Consensus 482 v~~VI~ 487 (560)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888873
No 379
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=63.40 E-value=3.8 Score=37.70 Aligned_cols=21 Identities=14% Similarity=0.119 Sum_probs=16.8
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i 168 (560)
+-++++|+.|||||+.+-...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 457899999999999865543
No 380
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=63.36 E-value=3.7 Score=35.81 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.+.|+|++|||||+++-..+
T Consensus 10 ~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999865443
No 381
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=63.35 E-value=3.6 Score=35.13 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~ 169 (560)
.|+-++++|+.|+|||+.++..+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999987665543
No 382
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=62.74 E-value=3.6 Score=36.26 Aligned_cols=18 Identities=33% Similarity=0.167 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~ 164 (560)
+.-+.|.|++|||||+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445779999999999874
No 383
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=62.71 E-value=3.1 Score=40.61 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
-.+|+||+|+|||..+-..
T Consensus 25 ~~~i~G~NGaGKTTll~ai 43 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAI 43 (365)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5789999999999875333
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=62.67 E-value=4.2 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.191 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHH
Q 008602 149 DVVIQSYTGSGKTLAY 164 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~ 164 (560)
-.+|+|++|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5789999999999873
No 385
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=62.67 E-value=3.4 Score=35.27 Aligned_cols=18 Identities=28% Similarity=0.139 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~ 166 (560)
-+.|+|++|||||+....
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999987433
No 386
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=62.65 E-value=4.2 Score=35.43 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.+.++|.+|||||+++-...
T Consensus 14 iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999999865544
No 387
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=62.58 E-value=5.6 Score=38.30 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLAY 164 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~~ 164 (560)
.+..+++|.+ ++..|.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 6677778866 567999999999874
No 388
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=62.40 E-value=4.2 Score=38.37 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~ 164 (560)
-.|.-+.|+||+|+|||+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35788899999999999863
No 389
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=62.36 E-value=3.5 Score=36.35 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAY 164 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~ 164 (560)
.+.-+.|.|++|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556789999999999863
No 390
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=62.24 E-value=7 Score=35.87 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=35.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKL 214 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~ 214 (560)
|..+++.|++|+|||+.++..+...+ ..|-+++++.-. +-..++.+.++.+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~----------------~~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKL----------------KSDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHH----------------HTTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHH----------------HCCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 46678888888888877777777777 446667776653 4446666666553
No 391
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=62.15 E-value=12 Score=40.57 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=52.9
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhC------CCCCceEEEEecCCChhHHHHHHH--------cCCCcEEEeCchHHHH
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLG------PSDKKAVQQLVGGANRSRQEEALR--------KNKPAIVVGTPGRIAE 256 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~IlI~Tp~~l~~ 256 (560)
+.++||.+|++.-+..+++.+.+.+. ......+..++++.....+...+. .|...|+|+|. .+..
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-iae~ 381 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-IAET 381 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-HHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-HHHh
Confidence 56799999999999999998876321 113344667788777665544433 45668999993 3333
Q ss_pred HHHcCCccCCCeeEEEE
Q 008602 257 ISAAGKLHTHGCRFLVL 273 (560)
Q Consensus 257 ~l~~~~~~~~~l~llIi 273 (560)
.+++.++.+||-
T Consensus 382 -----GidIp~v~~VId 393 (773)
T 2xau_A 382 -----SLTIDGIVYVVD 393 (773)
T ss_dssp -----TCCCTTEEEEEE
T ss_pred -----CcCcCCeEEEEe
Confidence 567788887764
No 392
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=62.07 E-value=4.4 Score=38.94 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=17.9
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 3444556755 57799999999997
No 393
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=62.07 E-value=3.5 Score=39.12 Aligned_cols=26 Identities=19% Similarity=0.023 Sum_probs=20.4
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHh
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
..+..+++.||+|+|||..++..+..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34566799999999999987776654
No 394
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=62.05 E-value=7 Score=36.80 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++++||+|+|||..+...+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~ 59 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALA 59 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHH
Confidence 59999999999998754443
No 395
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=61.86 E-value=54 Score=35.87 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=17.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~ 169 (560)
.+++++||+|+|||..+-..+-
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999987554443
No 396
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=61.69 E-value=5 Score=38.76 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.7
Q ss_pred HhhhhcCCc--EEEEcCCCchHHHH
Q 008602 141 IPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 141 i~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
+..+++|.+ ++..|.||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 445666755 56799999999987
No 397
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=61.54 E-value=13 Score=42.42 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=44.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHHHHHHHHhC
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIVREIKKLLG 216 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~~~~~~~~~ 216 (560)
..+|.|.-|||||.+-..-++..+...... .+....-.-.++|+|+=|+.-|..+.+++.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~----~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGS----AAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSS----SSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcc----cccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 459999999999999777777776421100 0000012235799999999999999999888753
No 398
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=61.49 E-value=5 Score=38.89 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=18.2
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 3445666755 56799999999987
No 399
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=61.45 E-value=4.5 Score=40.41 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
.+++++.||+|+|||+.+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 36799999999999987543
No 400
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=61.41 E-value=5.6 Score=38.34 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=20.3
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLAY 164 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~~ 164 (560)
.+..+++|.+ ++..|.||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6777788866 467999999999884
No 401
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=61.40 E-value=5.1 Score=38.60 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=18.0
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 3445566755 56799999999987
No 402
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=61.24 E-value=5 Score=37.73 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
+..++++|++|+|||+.+...+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457789999999998766555443
No 403
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=61.22 E-value=4.7 Score=36.85 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+..+.|.|++|||||+++-+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3567889999999999874433
No 404
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=61.11 E-value=5.2 Score=38.20 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=19.2
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.+..+++|.+ ++..|.||||||..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 5666777765 56799999999987
No 405
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=61.11 E-value=4.8 Score=42.14 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHH
Q 008602 149 DVVIQSYTGSGKTLA 163 (560)
Q Consensus 149 ~~li~~~TGsGKT~~ 163 (560)
++|+.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999986
No 406
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=61.06 E-value=12 Score=38.65 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=19.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+++|.|.||||||...-..++..+
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999987554454444
No 407
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=60.87 E-value=5 Score=38.97 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=18.1
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.+..+++|.+ ++..|.||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 3445667755 56799999999987
No 408
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=60.84 E-value=23 Score=35.18 Aligned_cols=69 Identities=7% Similarity=0.148 Sum_probs=50.6
Q ss_pred EEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChh---HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeE
Q 008602 194 AVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS---RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270 (560)
Q Consensus 194 vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~l 270 (560)
+||.|+++.-|..+++.+.+. ...+..+.|+.... .....++++...|+|+|. .-...+++.++++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 999999999999999988774 22355666665544 334566778889999994 2223678888898
Q ss_pred EEE
Q 008602 271 LVL 273 (560)
Q Consensus 271 lIi 273 (560)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 409
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=60.73 E-value=6 Score=47.16 Aligned_cols=48 Identities=19% Similarity=0.074 Sum_probs=36.8
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQIV 208 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~~ 208 (560)
+-.+..++++|++|+|||..+...+.+.+ ..|..++++.-. ++..+++
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~----------------k~Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ----------------REGKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH----------------TTTCCEEEECTT-SCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH----------------HcCCeEEEEEcc-ccHHHHH
Confidence 33568999999999999999999988887 456778887643 4445554
No 410
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=60.70 E-value=5.3 Score=38.43 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=18.5
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLAY 164 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~~ 164 (560)
.++.+++|.+ ++..|.||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445566765 567999999999873
No 411
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=60.69 E-value=5.7 Score=40.17 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~ 169 (560)
..++++.||+|+|||..+-..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998654443
No 412
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=60.68 E-value=7.3 Score=37.24 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=25.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEc
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVA 198 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~ 198 (560)
-+++.+..|.|||+++...+.... ..|.+++++-
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA----------------~~G~rVllvD 54 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMS----------------KVRSSVLLIS 54 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH----------------TSSSCEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHH----------------HCCCeEEEEE
Confidence 456789999999999887777765 4466777764
No 413
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=60.59 E-value=3.3 Score=40.42 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~ 165 (560)
-.+|+|+||+|||...-
T Consensus 27 l~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFE 43 (371)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999999733
No 414
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=60.57 E-value=7.1 Score=45.83 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=31.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSR 201 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~ 201 (560)
.+..++++|++|+|||..++..+...+ ..|..++++.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~----------------~~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQ----------------REGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH----------------HTTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh----------------hCCCceEEEEecC
Confidence 357899999999999999888888776 3355688877543
No 415
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=60.56 E-value=5.3 Score=38.58 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=18.2
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.+..+++|.+ ++..|.||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 3445666755 57799999999987
No 416
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=60.48 E-value=3.7 Score=37.12 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~ 163 (560)
..|.-+.+.||.|||||+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3567889999999999974
No 417
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=60.28 E-value=5.7 Score=34.49 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=20.6
Q ss_pred CCCeeEEEEechhhh--hccchHHHHHHHHH
Q 008602 265 THGCRFLVLDEIDEL--LSFNFREAMHRIVE 293 (560)
Q Consensus 265 ~~~l~llIiDE~h~l--~~~~~~~~l~~i~~ 293 (560)
..+.+++|+||+..+ .+..+.+.+.+++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 456789999998765 44456666666654
No 418
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=60.26 E-value=3.9 Score=37.44 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.3
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
..++++|++|||||+.+-..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999975443
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=60.25 E-value=5.4 Score=38.63 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
+.-+.++|++|+|||+..-.
T Consensus 157 g~vi~lvG~nGsGKTTll~~ 176 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGK 176 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 45678999999999997443
No 420
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=60.19 E-value=5.5 Score=38.69 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=18.3
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.+..+++|.+ ++..|.||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 4455667765 56799999999986
No 421
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=60.12 E-value=5.4 Score=39.25 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=18.3
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLAY 164 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~~ 164 (560)
.+..+++|.+ ++..|.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3445566754 567999999999873
No 422
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=60.08 E-value=5.3 Score=38.48 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=18.1
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 3455666755 56799999999987
No 423
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.77 E-value=5.5 Score=39.26 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLAY 164 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~~ 164 (560)
.+..+++|.+ ++..|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667778866 467999999999984
No 424
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=59.69 E-value=14 Score=41.68 Aligned_cols=73 Identities=11% Similarity=0.284 Sum_probs=56.7
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CC----ceeeccCCCCHHHHHHHHHHhhcCCceEEEEec-CcccCCC-CCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GM----KAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE-LSARGLD-VAE 481 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~----~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~-~~~~Gid-ip~ 481 (560)
.+.+++|.+|++.-+.++.+.+++. ++ .+..+||+++..++....+.+.+ .+|+|+|. .+..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4678999999999999888888753 45 78999999999888888877776 89999996 2222121 557
Q ss_pred CCEEE
Q 008602 482 CDLVV 486 (560)
Q Consensus 482 v~~VI 486 (560)
+++||
T Consensus 176 l~~lV 180 (1054)
T 1gku_B 176 FDFIF 180 (1054)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77877
No 425
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=59.58 E-value=5.5 Score=38.52 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=18.5
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4555667765 56789999999987
No 426
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=59.38 E-value=5.5 Score=38.48 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 4556667765 56799999999987
No 427
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=58.89 E-value=5.1 Score=36.37 Aligned_cols=20 Identities=30% Similarity=0.170 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
...++++|+.|||||+.+-.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45789999999999987433
No 428
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=58.70 E-value=5.3 Score=38.66 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=18.4
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 4455667765 56799999999987
No 429
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=58.64 E-value=7.5 Score=37.53 Aligned_cols=24 Identities=21% Similarity=0.008 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHh
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
|.-+.|+|+.|+|||..+...+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999987666554
No 430
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=58.52 E-value=4.1 Score=38.49 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
+..|.-+.|+||+|+|||+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 34578899999999999986
No 431
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=58.47 E-value=19 Score=39.95 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=40.9
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEE--------ecC---CChhHHHHHHHc-CCCcEEEeCchHHHHH
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQL--------VGG---ANRSRQEEALRK-NKPAIVVGTPGRIAEI 257 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~l~~-~~~~IlI~Tp~~l~~~ 257 (560)
.+.++||.++++..+..+++.+.+...... ..+..+ .|+ .++......+.+ |..+|+|+|- .+..
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~-ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-~~~e- 706 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNY-IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-VADE- 706 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSS-CCCEEC----------------------------CCSEEEEEC-C----
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccc-cceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-chhc-
Confidence 457899999999999999999987521111 111222 222 234455566677 8889999993 2222
Q ss_pred HHcCCccCCCeeEEEEech
Q 008602 258 SAAGKLHTHGCRFLVLDEI 276 (560)
Q Consensus 258 l~~~~~~~~~l~llIiDE~ 276 (560)
.+++.++++||.=+.
T Consensus 707 ----GIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 707 ----GIDIVQCNLVVLYEY 721 (936)
T ss_dssp -------CCCCSEEEEESC
T ss_pred ----CCcchhCCEEEEeCC
Confidence 567888898886443
No 432
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=58.45 E-value=8.7 Score=34.03 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i 168 (560)
+.|+-+++.|+.|+|||++.-...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 456778999999999999865443
No 433
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=58.44 E-value=7.3 Score=40.02 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=21.1
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHHHHh
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLPILS 170 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~i~~ 170 (560)
+..|.-++|.|++|+|||+.....+-.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455778999999999999876655544
No 434
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=58.42 E-value=7.2 Score=40.92 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=19.6
Q ss_pred hhhhcCCcEEEEcCCCchHHHHHH
Q 008602 142 PSILKNHDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 142 ~~i~~~~~~li~~~TGsGKT~~~~ 165 (560)
..+..+..+++.||+|+|||+.+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 345567899999999999998743
No 435
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=58.28 E-value=5.6 Score=38.74 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=17.9
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.++.+++|.+ ++..|.||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3444566755 56799999999987
No 436
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=58.17 E-value=5.5 Score=39.31 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=19.8
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLAY 164 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~~ 164 (560)
.+..+++|.+ ++..|.||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5667778865 567999999999873
No 437
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=58.11 E-value=5.3 Score=39.00 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=16.8
Q ss_pred hhhhcCCc--EEEEcCCCchHHHH
Q 008602 142 PSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 142 ~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
+.+++|.+ ++..|.||||||..
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeE
Confidence 34556655 56799999999987
No 438
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=58.07 E-value=4.3 Score=36.73 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.7
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
+..|.-+.+.||.|+|||+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34577889999999999985
No 439
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=58.07 E-value=5.4 Score=35.34 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~ 167 (560)
..+.|+|+.|||||+++-..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999975544
No 440
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=58.01 E-value=5 Score=38.97 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.9
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.+..+++|.+ ++..|.||||||.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 5566677765 56799999999987
No 441
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=57.98 E-value=7 Score=37.27 Aligned_cols=24 Identities=29% Similarity=0.133 Sum_probs=19.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
-++..+..|.|||+++...+....
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA 39 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMA 39 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH
Confidence 356789999999999887777665
No 442
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=57.74 E-value=5.9 Score=38.68 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=18.5
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLAY 164 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~~ 164 (560)
.++.+++|.+ ++..|.||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445666754 577999999999873
No 443
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=57.12 E-value=5.3 Score=40.38 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~ 165 (560)
+.++++||+|+|||+.+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999998753
No 444
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=57.01 E-value=9.1 Score=36.99 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=18.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
..+.++|.+|+|||..+...+....
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999998665554433
No 445
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=56.96 E-value=6.4 Score=38.32 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=19.2
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.+..+++|.+ ++..|.||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5666777765 56799999999987
No 446
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=56.68 E-value=7.3 Score=36.93 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=48.0
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChh---HHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRS---RQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||.++++.-+..+++.+. .+..+.++.... .....+.++..+|+|+|. .+ . ..+++.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~----~-~Gid~~ 283 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-VA----S-RGLDIP 283 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-HH----H-TTCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-cc----c-cCCCcc
Confidence 35669999999988877665553 144555655433 345566778889999993 22 2 267788
Q ss_pred CeeEEEEec
Q 008602 267 GCRFLVLDE 275 (560)
Q Consensus 267 ~l~llIiDE 275 (560)
+++++|.-.
T Consensus 284 ~~~~Vi~~~ 292 (337)
T 2z0m_A 284 LVEKVINFD 292 (337)
T ss_dssp CBSEEEESS
T ss_pred CCCEEEEec
Confidence 888888643
No 447
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=56.59 E-value=5.1 Score=35.63 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=20.7
Q ss_pred CCeeEEEEechhhhhccchHHHHHHHHHHh
Q 008602 266 HGCRFLVLDEIDELLSFNFREAMHRIVEHV 295 (560)
Q Consensus 266 ~~l~llIiDE~h~l~~~~~~~~l~~i~~~~ 295 (560)
.+.+++++||--.-+|......+.+++..+
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 456788888887767777666666666554
No 448
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=56.27 E-value=8.3 Score=37.20 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHHhhh
Q 008602 150 VVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+++.+..|.|||+++...+....
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA 51 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLA 51 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCccHHHHHHHHHHHHH
Confidence 56788999999999877776655
No 449
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=56.27 E-value=6 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.066 Sum_probs=15.6
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
.+.|+|+.|||||+++-..
T Consensus 24 iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999986543
No 450
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=56.18 E-value=6.9 Score=39.05 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.1
Q ss_pred HHhhhhcCCc--EEEEcCCCchHHHH
Q 008602 140 AIPSILKNHD--VVIQSYTGSGKTLA 163 (560)
Q Consensus 140 ai~~i~~~~~--~li~~~TGsGKT~~ 163 (560)
.+..+++|.+ ++..|.||||||..
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 3445567765 57799999999987
No 451
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=56.12 E-value=5.9 Score=34.61 Aligned_cols=20 Identities=25% Similarity=0.086 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~ 166 (560)
+.-+.++|+.|||||+.+-.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~ 41 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578999999999987543
No 452
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=55.91 E-value=57 Score=23.84 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=56.5
Q ss_pred EechhhHHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCCHHHHHHHHHHhhcCCceEEEEec
Q 008602 394 VTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNE 471 (560)
Q Consensus 394 ~~~~~~k~~~l~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~ 471 (560)
+.........+..+....+..+++|..+...-+.++...+.+.|+++..+-.+.+..+.++.-+...+..+.|--.|+
T Consensus 32 vndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 32 VNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp ECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred cCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 333344444555666667789999999999999999999999999999988887777766665555555555544443
No 453
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=55.90 E-value=7 Score=39.50 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~ 166 (560)
.-+.++|++|+|||+..-.
T Consensus 294 eVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHH
Confidence 4578999999999987443
No 454
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=55.61 E-value=3.8 Score=36.12 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
-++++|+.|||||+.+-..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 3689999999999875443
No 455
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=55.54 E-value=10 Score=36.26 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHhhh
Q 008602 149 DVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
-+++.+.-|.|||+++...+....
T Consensus 18 i~~~sgkGGvGKTt~a~~lA~~la 41 (334)
T 3iqw_A 18 WIFVGGKGGVGKTTTSCSLAIQLA 41 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHH
Confidence 467789999999999887776655
No 456
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=55.51 E-value=8.2 Score=29.77 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=32.5
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLG 448 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~ 448 (560)
.+.+++++|.+-......+..|.+.|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4578999999988899999999999999999999863
No 457
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=55.50 E-value=4.8 Score=37.40 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=16.6
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
+..|.-+.|.||.|+|||+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577889999999999985
No 458
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=55.36 E-value=7 Score=39.37 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=46.8
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCCChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeE
Q 008602 191 DIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRF 270 (560)
Q Consensus 191 ~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~l 270 (560)
+.++||.+|++.-+..+++.+.+. ...+..+. +.........+.++..+|+|+|. .+.. .+++.+ ++
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh-~~~R~~~~~~f~~g~~~iLVaT~-v~~~-----GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLN-RKSYDTEYPKCKNGDWDFVITTD-ISEM-----GANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEES-TTCCCCCGGGSSSCCCSEEEESS-CC--------CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecC-HHHHHHHHhhccCCCceEEEECC-hHHh-----CeecCC-CE
Confidence 467999999999999999999875 22243444 44555556667788889999993 2222 456666 66
Q ss_pred EE
Q 008602 271 LV 272 (560)
Q Consensus 271 lI 272 (560)
||
T Consensus 257 VI 258 (459)
T 2z83_A 257 VI 258 (459)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 459
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=55.14 E-value=6.3 Score=36.89 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYL 165 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~ 165 (560)
.-+.|+|++|||||+.+-
T Consensus 32 ~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346789999999998753
No 460
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.00 E-value=6.5 Score=46.15 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=35.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEccCHHHHHHH
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAPSRELGMQI 207 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~Pt~~La~Q~ 207 (560)
+-+.|.||.|||||+.++..+.+.. ..|..++++.+--+|....
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~----------------~~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQ----------------REGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH----------------HTTCCEEEECTTSCCCHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH----------------hcCCeEEEEecCCCCCHHH
Confidence 5689999999999999888887765 5577799999977775544
No 461
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=54.99 E-value=13 Score=40.10 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
.++++||+|+|||..+-..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 49999999999999865444
No 462
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=54.94 E-value=4.3 Score=36.38 Aligned_cols=19 Identities=37% Similarity=0.338 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~ 163 (560)
..|.-+.+.||.|+|||+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567788999999999975
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=54.93 E-value=6.3 Score=36.95 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
-++++|++|||||+.+-..+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999865443
No 464
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=54.80 E-value=6.1 Score=36.79 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=16.6
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~i 168 (560)
-+.|+|+.|||||+++-...
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999865554
No 465
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=54.79 E-value=5.1 Score=36.00 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=16.8
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
+..|.-+.+.||.|+|||+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577889999999999985
No 466
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=54.63 E-value=6.3 Score=33.05 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=18.6
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHhh
Q 008602 145 LKNHDVVIQSYTGSGKTLAYLLPILSK 171 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~~~~~i~~~ 171 (560)
..|.-+.+.||.|+|||+. +..+...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL-lr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL-TRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHh
Confidence 4566788999999999975 3344333
No 467
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=54.60 E-value=5.2 Score=36.46 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.8
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
+..|.-+.+.||.|+|||+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577889999999999985
No 468
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=54.53 E-value=6.8 Score=34.16 Aligned_cols=19 Identities=26% Similarity=0.123 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 008602 149 DVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~~~~ 167 (560)
.+.|.|+.|||||+++-..
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999985543
No 469
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=54.53 E-value=10 Score=33.59 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=22.6
Q ss_pred EEcCCCchHHHHHHHHHHhhhCCCCcCCCCCCCCCCCCCCeeEEEEcc
Q 008602 152 IQSYTGSGKTLAYLLPILSKVGPLKDKSSNGNGESGKKTDIEAVIVAP 199 (560)
Q Consensus 152 i~~~TGsGKT~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vlil~P 199 (560)
....+|.|||.+++..+.... ..|.+|+++=|
T Consensus 7 ~s~kgGvGKTt~a~nLa~~la----------------~~G~rVll~dp 38 (224)
T 1byi_A 7 TGTDTEVGKTVASCALLQAAK----------------AAGYRTAGYKP 38 (224)
T ss_dssp EESSTTSCHHHHHHHHHHHHH----------------HTTCCEEEECS
T ss_pred EECCCCCCHHHHHHHHHHHHH----------------HCCCCEEEEcc
Confidence 344689999999877776654 44667887654
No 470
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=54.47 E-value=41 Score=37.63 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHh
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLL 215 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~ 215 (560)
.+.+++|+|+++.-|...++.|.+..
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 45689999999999999999998875
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=54.42 E-value=5.4 Score=36.70 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
+..|.-+.|.||.|+|||+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34577889999999999985
No 472
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=54.34 E-value=8.2 Score=41.74 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=33.8
Q ss_pred cccCCcccCCCCHHHHHHHHhCC---CCCChHHHHHHHhhhhcCCcEEEEcCCCchHHHHHHHH
Q 008602 107 FAANSFLELGLPPLLLERLEREG---FNVPTEVQSAAIPSILKNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 107 ~~~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~ai~~i~~~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+...|.+.+.-+...+.+...= ...|..++. + -+...+.+|+.||.|+|||+.+-..
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~--~-g~~~~~gvLl~GPPGtGKT~lAkai 531 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK--F-GMTPSKGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSS--S-CCCCCSCCEEESSTTSSHHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHh--c-CCCCCceEEEecCCCCCchHHHHHH
Confidence 34566888877777777766441 111111110 0 0112367999999999999875433
No 473
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=54.18 E-value=6.7 Score=40.52 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
.+..+++.||+|+|||+.+- .+...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar-~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK-SIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHHhc
Confidence 46789999999999998743 333333
No 474
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=53.94 E-value=23 Score=36.86 Aligned_cols=82 Identities=10% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCC---CCCceEEEEecCCC--hhHHHHHHHcCCCc---EEEeCchHHHHHHHcC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGP---SDKKAVQQLVGGAN--RSRQEEALRKNKPA---IVVGTPGRIAEISAAG 261 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~l~~~~~~---IlI~Tp~~l~~~l~~~ 261 (560)
.+.++||.|+++.-|..+++.+.+.... .....+..+.|... .......+.++..+ |+|+| ..+..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-~~l~~----- 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-QLLTT----- 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-STTTT-----
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-Chhhc-----
Confidence 3567999999999999999999876321 11222444444433 23445666665433 55555 34433
Q ss_pred CccCCCeeEEEEechh
Q 008602 262 KLHTHGCRFLVLDEID 277 (560)
Q Consensus 262 ~~~~~~l~llIiDE~h 277 (560)
.+++.++++||++..-
T Consensus 512 GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVV 527 (590)
T ss_dssp TCCCTTEEEEEEESCC
T ss_pred CccchheeEEEEEecC
Confidence 6788899999987654
No 475
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=53.92 E-value=9.1 Score=28.92 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=32.3
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLG 448 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~~ 448 (560)
.+.+++++|.+-......+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3578999999988899999999999999999999853
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=53.91 E-value=7.5 Score=34.11 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHH
Q 008602 149 DVVIQSYTGSGKTLAY 164 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~ 164 (560)
-.+|+|++|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5789999999999874
No 477
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=53.85 E-value=13 Score=39.94 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=52.5
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCC--CC-----------------------------CceEEEEecCCChhHH---
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGP--SD-----------------------------KKAVQQLVGGANRSRQ--- 235 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~--- 235 (560)
.+.++||.+|++.-+..++..+.+.+.. .. ...+..++++.....+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3567999999999999999998876432 00 0125667777665443
Q ss_pred HHHHHcCCCcEEEeCchHHHHHHHcCCccCCCeeEEEE
Q 008602 236 EEALRKNKPAIVVGTPGRIAEISAAGKLHTHGCRFLVL 273 (560)
Q Consensus 236 ~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~~l~llIi 273 (560)
...+.+|...|+|+|. .+.. .+++..+.+||-
T Consensus 331 ~~~f~~g~~~vlvaT~-~l~~-----Gidip~~~~VI~ 362 (715)
T 2va8_A 331 EEGFRQRKIKVIVATP-TLAA-----GVNLPARTVIIG 362 (715)
T ss_dssp HHHHHTTCSCEEEECG-GGGG-----SSCCCBSEEEEC
T ss_pred HHHHHcCCCeEEEECh-HHhc-----ccCCCceEEEEe
Confidence 3445678889999993 2222 567777777553
No 478
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=53.79 E-value=4.9 Score=36.91 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=16.7
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
+..|.-+.+.||.|+|||+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EeCCCEEEEECCCCCCHHHH
Confidence 34577888999999999985
No 479
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=53.61 E-value=6.3 Score=35.72 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLL 166 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~ 166 (560)
.+.-+-|.||.|||||+.+-.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 344577999999999987543
No 480
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=53.31 E-value=8.8 Score=40.09 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=20.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHhhh
Q 008602 148 HDVVIQSYTGSGKTLAYLLPILSKV 172 (560)
Q Consensus 148 ~~~li~~~TGsGKT~~~~~~i~~~~ 172 (560)
+-+++.|..|.|||+++...+....
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA 33 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLA 33 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHH
Confidence 4577899999999999888777665
No 481
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=53.24 E-value=7.8 Score=37.45 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=15.3
Q ss_pred cCCc--EEEEcCCCchHHHHH
Q 008602 146 KNHD--VVIQSYTGSGKTLAY 164 (560)
Q Consensus 146 ~~~~--~li~~~TGsGKT~~~ 164 (560)
.|.+ ++..|.||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3665 588999999999873
No 482
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=53.09 E-value=3 Score=29.58 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=6.2
Q ss_pred ccccccccccCCCceecceeeeecccCCCCceeEeec
Q 008602 17 LPLHKFSCVSRMPWCHNGVRFLSQVGRHHGPLTLASL 53 (560)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (560)
+|+++++.++| |++.++..+.|++|
T Consensus 47 VPv~~~~~i~r------------y~g~~~~~p~L~kL 71 (71)
T 3mlq_E 47 LPVEQLPLLKR------------HPGTTDDPPELSSL 71 (71)
T ss_dssp EESSSCC------------------------------
T ss_pred EEhhhhcceee------------ecCCCCCCCcCCcC
Confidence 59999999999 98877777787765
No 483
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=52.91 E-value=5.6 Score=36.72 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=16.6
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
+..|.-+.+.||.|+|||+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp EETTCEEEEECCTTSCHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34577888999999999985
No 484
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=52.80 E-value=7.6 Score=34.98 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
...+.|.|++|||||+++-..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 346889999999999875543
No 485
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=52.71 E-value=8.6 Score=33.93 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~ 167 (560)
...+.++|++|||||.++-..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l 23 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRV 23 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 346889999999999985443
No 486
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=52.53 E-value=8.1 Score=34.85 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=49.8
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-----ccc---CCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-----SAR---GLDV 479 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-----~~~---Gidi 479 (560)
.+.+++|.+|++.-+.+..+.+.+. ++.+..++|+.....+ ......+..+|+|+|.- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999998888775 5677777765322111 11223567899999941 112 5788
Q ss_pred CCCCEEEE
Q 008602 480 AECDLVVN 487 (560)
Q Consensus 480 p~v~~VI~ 487 (560)
.++.+||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 88998883
No 487
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=52.35 E-value=12 Score=32.00 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 008602 149 DVVIQSYTGSGKTLAY 164 (560)
Q Consensus 149 ~~li~~~TGsGKT~~~ 164 (560)
-++++|+.|+|||...
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4779999999999863
No 488
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=52.32 E-value=8.2 Score=34.69 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~ 167 (560)
.+..+.++|+.|||||+++-..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3456889999999999975443
No 489
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=52.10 E-value=9 Score=29.14 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=31.7
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~ 447 (560)
.+.+++++|.+-......+..|...|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 357899999998888999999999999999999885
No 490
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=52.02 E-value=7.1 Score=35.04 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q 008602 146 KNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 146 ~~~~~li~~~TGsGKT~~~~~~ 167 (560)
.++-+++.|+.|+|||++.-..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4667899999999999985443
No 491
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=51.89 E-value=5.2 Score=36.33 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~ 163 (560)
..|.-+.+.||.|+|||+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567789999999999985
No 492
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.87 E-value=6.1 Score=35.78 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~ 163 (560)
..|.-+.+.||.|+|||+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567788999999999985
No 493
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=51.64 E-value=19 Score=36.78 Aligned_cols=71 Identities=11% Similarity=0.201 Sum_probs=50.9
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHC----CCceeeccCCCCHHHHHHHHHHhhcCCceEEEEecC-c----ccC-C-CCCC
Q 008602 413 AQTVIAFMNNTRQLKDAVFKLEAR----GMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNEL-S----ARG-L-DVAE 481 (560)
Q Consensus 413 ~~~~iif~~~~~~~~~~~~~L~~~----~~~~~~lhg~~~~~~r~~v~~~F~~g~~~iLvaT~~-~----~~G-i-dip~ 481 (560)
+.+++|++|++.-+.+....+.+. ++.+..+||+.+...+...+. +..+|+|+|.- + ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 788999999998888877777664 889999999987665533332 24689999952 2 222 3 5667
Q ss_pred CCEEEE
Q 008602 482 CDLVVN 487 (560)
Q Consensus 482 v~~VI~ 487 (560)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788873
No 494
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=51.56 E-value=3.1 Score=42.20 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHHhCCCCCceEEEEecCC---ChhHHHHHHHcCCCcEEEeCchHHHHHHHcCCccCC
Q 008602 190 TDIEAVIVAPSRELGMQIVREIKKLLGPSDKKAVQQLVGGA---NRSRQEEALRKNKPAIVVGTPGRIAEISAAGKLHTH 266 (560)
Q Consensus 190 ~~~~vlil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~IlI~Tp~~l~~~l~~~~~~~~ 266 (560)
.+.++||.||++.-+..+++.+.... ..+..+.|+. ........+.+|..+|+|+|. .+.. .+++.
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~-----~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-~~~~-----GlDip 400 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEG-----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-VCAR-----GIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCC-----ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-cccc-----CCccc
Confidence 34679999999999998888887641 1233444443 334445666778888999993 2222 56777
Q ss_pred CeeEEE
Q 008602 267 GCRFLV 272 (560)
Q Consensus 267 ~l~llI 272 (560)
++++||
T Consensus 401 ~v~~VI 406 (479)
T 3fmp_B 401 QVSVVI 406 (479)
T ss_dssp ------
T ss_pred cCCEEE
Confidence 788876
No 495
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=51.47 E-value=8.2 Score=33.13 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 008602 150 VVIQSYTGSGKTLAYLLPI 168 (560)
Q Consensus 150 ~li~~~TGsGKT~~~~~~i 168 (560)
++|.|++|||||.-+...+
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999998766544
No 496
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.27 E-value=7 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=19.3
Q ss_pred hhcCCcEEEEcCCCchHHHHHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLAYLLP 167 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~~~~~ 167 (560)
+..++.+|++||||+|||..+...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~~~ 1287 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMNNA 1287 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHHHHH
Confidence 445799999999999999876333
No 497
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=51.08 E-value=9.5 Score=41.23 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHH
Q 008602 147 NHDVVIQSYTGSGKTLAYLLPIL 169 (560)
Q Consensus 147 ~~~~li~~~TGsGKT~~~~~~i~ 169 (560)
..++|+.||+|+|||.++-..+-
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 36899999999999998654443
No 498
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=51.00 E-value=6.5 Score=36.17 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 008602 145 LKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 145 ~~~~~~li~~~TGsGKT~~ 163 (560)
..|.-+.+.||.|+|||+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567788999999999985
No 499
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=50.88 E-value=9.8 Score=29.13 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=31.2
Q ss_pred CCCeEEEEEcChhhHHHHHHHHHHCCCceeeccCCC
Q 008602 412 DAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDL 447 (560)
Q Consensus 412 ~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lhg~~ 447 (560)
.+.+++++|.+-......+..|.+.|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 357899999988888899999999999888888875
No 500
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=50.78 E-value=6.6 Score=36.33 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.7
Q ss_pred hhcCCcEEEEcCCCchHHHH
Q 008602 144 ILKNHDVVIQSYTGSGKTLA 163 (560)
Q Consensus 144 i~~~~~~li~~~TGsGKT~~ 163 (560)
+..|.-+.|.||.|+|||+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34577889999999999985
Done!