Query 008603
Match_columns 560
No_of_seqs 405 out of 3325
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.1E-27 3.7E-32 257.4 20.0 213 4-217 10-252 (491)
2 3o7q_A L-fucose-proton symport 99.9 6.2E-21 2.1E-25 201.1 24.5 186 3-190 23-236 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.8 3.2E-20 1.1E-24 196.2 15.5 184 4-192 26-214 (451)
4 2gfp_A EMRD, multidrug resista 99.8 6.2E-18 2.1E-22 175.2 18.1 179 9-191 3-181 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.7 2.5E-16 8.5E-21 169.0 24.8 169 12-184 19-196 (491)
6 2xut_A Proton/peptide symporte 99.6 1.6E-14 5.5E-19 156.4 18.8 168 12-183 18-197 (524)
7 4gc0_A D-xylose-proton symport 99.4 1.3E-11 4.5E-16 132.0 19.9 180 14-202 285-474 (491)
8 1pw4_A Glycerol-3-phosphate tr 99.3 8.7E-11 3E-15 123.6 20.7 169 11-183 257-432 (451)
9 2cfq_A Lactose permease; trans 99.2 1.9E-10 6.4E-15 121.6 16.4 145 43-189 259-404 (417)
10 3o7q_A L-fucose-proton symport 99.1 2.3E-09 7.9E-14 112.4 20.4 151 22-179 274-427 (438)
11 2cfq_A Lactose permease; trans 99.0 5.1E-11 1.8E-15 126.0 1.7 167 15-188 16-191 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.0 7.7E-10 2.6E-14 118.3 10.8 159 25-188 302-475 (491)
13 2xut_A Proton/peptide symporte 98.4 1.1E-07 3.6E-12 102.6 4.3 144 45-188 337-506 (524)
14 2gfp_A EMRD, multidrug resista 98.4 8.2E-08 2.8E-12 98.7 2.3 150 14-170 207-362 (375)
15 1kdl_A YOPD protein; yersinia, 24.9 34 0.0012 21.1 1.5 13 516-528 7-19 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=1.1e-27 Score=257.42 Aligned_cols=213 Identities=32% Similarity=0.609 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLET------EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI 77 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~------s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ll 77 (560)
.+.++++++++.++.|||.+.+++.+|.+.++++.+. +....|++++++.+|.+++++++|+++||+|||++++
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3455667789999999999999999999999885421 2467789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHH
Q 008603 78 VSSVLYFIGGLVML------------------WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQF 139 (560)
Q Consensus 78 i~~ll~ai~~il~~------------------~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~ 139 (560)
++.+++.++.++++ +++|++.++++|+++|++.|...+.++.|++|++|+++|++..++.+.
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 99999999999998 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHHHHHHHHhcCcC
Q 008603 140 TGCVGMFLAYCMVFGMSLM------TAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGRED 213 (560)
Q Consensus 140 ~~~lG~~lg~li~~~l~~~------~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~~~l~~l~~~~~ 213 (560)
+..+|.+++++........ ....||+.+.+..++.++..+ ..+++||||+|+..+++.+++.+.+++....+.
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence 9999999987776655432 234789888888888777554 467899999999999999999999988876554
Q ss_pred hHHH
Q 008603 214 VAGE 217 (560)
Q Consensus 214 ~~~~ 217 (560)
...+
T Consensus 249 ~~~~ 252 (491)
T 4gc0_A 249 ATQA 252 (491)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.87 E-value=6.2e-21 Score=201.14 Aligned_cols=186 Identities=16% Similarity=0.142 Sum_probs=161.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 008603 3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL 82 (560)
Q Consensus 3 ~~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll 82 (560)
+.....+.+++..++.+++.....+.+|.+.+++|+ +..+.+++.+++.++.+++.++.|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 445566777888889999999999999999999999 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008603 83 YFIGGLVM---LWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 83 ~ai~~il~---~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
.+++.+++ .++++++.++++|++.|++.+...+....+++|++|+++|++++++.+....+|..+++.+...+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999977665443222
Q ss_pred ccc------------------------hhHHHHHHHHHHHHHHHhhh-eeccCChh
Q 008603 160 APS------------------------WRLMLGVLFIPSLIYFVLTI-FYLPESPR 190 (560)
Q Consensus 160 ~~~------------------------Wr~~f~i~ai~~ll~~il~~-~~lpEsP~ 190 (560)
... ||+.|++.+++.++..++.. +..||+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 222 99999888777766555433 33577654
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.83 E-value=3.2e-20 Score=196.19 Aligned_cols=184 Identities=14% Similarity=0.072 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 008603 4 AALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLY 83 (560)
Q Consensus 4 ~~li~i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ 83 (560)
.+...+.++++.++.+++.....+.+|.+.+++ . ++.+.+++.+++.++.+++.++.|+++||+|||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 355667788888888998888999999999999 8 7789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 008603 84 FIGGLVMLW----SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 84 ai~~il~~~----a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
+++.+++++ +++++.++++|++.|++.+...+....+++|++|+++|++++++.+....+|..+++.+...+ .+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--~~ 180 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG--MA 180 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH--HH
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 999999999 999999999999999999999999999999999999999999999999999999996665332 24
Q ss_pred ccc-hhHHHHHHHHHHHHHHHhhheeccCChhhh
Q 008603 160 APS-WRLMLGVLFIPSLIYFVLTIFYLPESPRWL 192 (560)
Q Consensus 160 ~~~-Wr~~f~i~ai~~ll~~il~~~~lpEsP~~L 192 (560)
..+ ||+.|++.+++.++..++.++++||+|+..
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 556 999999999998887777778889988653
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.77 E-value=6.2e-18 Score=175.15 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 008603 9 IAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGL 88 (560)
Q Consensus 9 i~~~l~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~i 88 (560)
+.++++.++.+++.....+.+|.+.+++|. ++.+.+++.+...++..++.++.|+++||+|||+.++++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 456777788888889999999999999999 779999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Q 008603 89 VMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLG 168 (560)
Q Consensus 89 l~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~ 168 (560)
++.++++++.+++.|++.|++.+...+....+++|++|+++|++.+++.+....+|..+++.+. ....+..+||+.|+
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~~~ 158 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG--GLLDTMWNWRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH--HHSSCHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996554 44455668999999
Q ss_pred HHHHHHHHHHHhhheeccCChhh
Q 008603 169 VLFIPSLIYFVLTIFYLPESPRW 191 (560)
Q Consensus 169 i~ai~~ll~~il~~~~lpEsP~~ 191 (560)
+.+++.++..++..+++||+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHCcccCCC
Confidence 99999888777667788998754
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.73 E-value=2.5e-16 Score=169.05 Aligned_cols=169 Identities=18% Similarity=0.195 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH-----cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATI-AGAVLYIKRE-----FHLETEPTIEGLIVAMSLIGATCITTCSGAIADW-LGRRPMLIVSSVLYF 84 (560)
Q Consensus 12 ~l~~fl~g~~~~~~-~~~lp~i~~~-----~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr-~GRR~~lli~~ll~a 84 (560)
.+..+...+..... ....+++.++ +|. +..+.+++.+++.++.+++.++.|+++|| +|||++++++.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 33444444444434 3345566666 999 88999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--hhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 008603 85 IGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEI--RGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS 162 (560)
Q Consensus 85 i~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~--RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~ 162 (560)
++.++++++++++.++++|++.|++.+...+....+++|++|+++ |+.+.++.+...++|..+++.+.. ...+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~g 174 (491)
T 4aps_A 97 LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG--AAQEAAG 174 (491)
T ss_dssp HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH--HHHhhhh
Confidence 999999999999999999999999999999999999999999988 777888888999999999966553 3445568
Q ss_pred hhHHHHHHHHHHHHHHHhhhee
Q 008603 163 WRLMLGVLFIPSLIYFVLTIFY 184 (560)
Q Consensus 163 Wr~~f~i~ai~~ll~~il~~~~ 184 (560)
||+.|++.++..++..++..+.
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888777765554433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.60 E-value=1.6e-14 Score=156.36 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHcC------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHH
Q 008603 12 AIGNLLQGWDNATIAGAV-LYIKREFH------LETEPTIEGLIVAMSLIGATCITTCSGAIADWL-GRRPMLIVSSVLY 83 (560)
Q Consensus 12 ~l~~fl~g~~~~~~~~~l-p~i~~~~g------ls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~-GRR~~lli~~ll~ 83 (560)
.+..++..+......+.+ +++.+++| . ++.+.+++.+++.++.+++.++.|+++||+ |||++++++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344444444444444444 46778899 8 779999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhH---HHHHHHHHHHHHHHHHHHHHhcc
Q 008603 84 FIGGLVMLWSP-NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTL---PQFTGCVGMFLAYCMVFGMSLMT 159 (560)
Q Consensus 84 ai~~il~~~a~-s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l---~~~~~~lG~~lg~li~~~l~~~~ 159 (560)
+++.+++++++ +++.++++|++.|++.+...+..+.+++|.+|+++|++..+. .+...++|..+++.+.. ...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~--~l~~ 173 (524)
T 2xut_A 96 CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP--LLLK 173 (524)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST--HHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc
Confidence 99999999998 999999999999999999999999999999999999877666 78888888888865543 3344
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhe
Q 008603 160 APSWRLMLGVLFIPSLIYFVLTIF 183 (560)
Q Consensus 160 ~~~Wr~~f~i~ai~~ll~~il~~~ 183 (560)
..+||+.|++.+++.++..++..+
T Consensus 174 ~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 174 NFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998887776554433
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.38 E-value=1.3e-11 Score=131.99 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhh
Q 008603 14 GNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWS 93 (560)
Q Consensus 14 ~~fl~g~~~~~~~~~lp~i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a 93 (560)
..+........+....|++.+..+. +............+..+++.++.+.+.||+|||+.++.+....+++.+..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 285 SIFQQFVGINVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 3333444445555667788888887 66777777778888899999999999999999999999988888777665542
Q ss_pred -----hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHH----hccccch
Q 008603 94 -----PNVYVL-LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMS----LMTAPSW 163 (560)
Q Consensus 94 -----~s~~~l-ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~----~~~~~~W 163 (560)
++...+ .+.-+..+++.+ ..+..+.+.+|++|++.|++++++......+|.++++...+.+. .....++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~ 441 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN 441 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred HhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 122222 222223333333 33677899999999999999999999999998888755443321 1122355
Q ss_pred hHHHHHHHHHHHHHHHhhheeccCChhhhhhhcchHHHH
Q 008603 164 RLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAK 202 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~~lpEsP~~L~~~gr~~ea~ 202 (560)
...|++.++++++.++++++++||| |||..|+.
T Consensus 442 ~~~~~i~~~~~~~~~i~~~~~~PET------kg~tLeei 474 (491)
T 4gc0_A 442 GFSYWIYGCMGVLAALFMWKFVPET------KGKTLEEL 474 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCC------TTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHheecCC------CCCCHHHH
Confidence 6678888999999888888999999 77765543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.31 E-value=8.7e-11 Score=123.62 Aligned_cols=169 Identities=20% Similarity=0.126 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHHHHHHHH-HH
Q 008603 11 AAIGNLLQGWDNATIAGAVLYIKRE-FHLETEPTIEGLIVAMSLIGATCITTCSGAIADWL--GRRPMLIVSSVLYF-IG 86 (560)
Q Consensus 11 ~~l~~fl~g~~~~~~~~~lp~i~~~-~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~--GRR~~lli~~ll~a-i~ 86 (560)
..+..++...........+|.+.++ +|. ++.+.+++.+...++.+++.++.|+++||+ |||+.+.++.++.. ++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 3444444445455556666665555 888 789999999999999999999999999999 99999888877766 66
Q ss_pred HHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHH-HHHHHHHHHHHHHhccccch
Q 008603 87 GLVMLWS--PNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCV-GMFLAYCMVFGMSLMTAPSW 163 (560)
Q Consensus 87 ~il~~~a--~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~l-G~~lg~li~~~l~~~~~~~W 163 (560)
.+++.+. .+.+.+++..++.|++.+...+....++.|.+|++.|++++++.+....+ |..+++.+. ....+..+|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~--g~l~~~~g~ 412 (451)
T 1pw4_A 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV--GYTVDFFGW 412 (451)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSSCS
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCc
Confidence 6666555 36778888889999999998888899999999999999999999999999 999986554 344456689
Q ss_pred hHHHHHHHHHHHHHHHhhhe
Q 008603 164 RLMLGVLFIPSLIYFVLTIF 183 (560)
Q Consensus 164 r~~f~i~ai~~ll~~il~~~ 183 (560)
+..|++.+++.++..++.++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877665443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.20 E-value=1.9e-10 Score=121.61 Aligned_cols=145 Identities=12% Similarity=0.161 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008603 43 TIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYIS 122 (560)
Q Consensus 43 ~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~lii~R~l~G~g~G~~~~~~~~~is 122 (560)
...++..+...++.+++.++.|+++||+|||+.+.++.++.+++.++.++.++.+.+++..++.+++.+...+....+++
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888899999999999999999999988888887777777778888888888888888877777889999
Q ss_pred hhcCCcchhhHhhH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhhheeccCCh
Q 008603 123 ETAPPEIRGLLNTL-PQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESP 189 (560)
Q Consensus 123 E~~p~~~RG~~~~l-~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i~ai~~ll~~il~~~~lpEsP 189 (560)
|.+|++.|++..++ .+....+|..+++.+.. ...+..++...|.+.+++.++..++.+++.||.+
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G--~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG--NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH--THHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH--HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999888 47778888888865543 3334557888999888888887777667777754
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.13 E-value=2.3e-09 Score=112.39 Aligned_cols=151 Identities=5% Similarity=-0.053 Sum_probs=118.3
Q ss_pred HHHHHHHHH-H-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008603 22 NATIAGAVL-Y-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVL 99 (560)
Q Consensus 22 ~~~~~~~lp-~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il~~~a~s~~~l 99 (560)
.......+| + +++.+|. ++.+.+++.+...++.+++.++.|+++||+|||+.+.++.++.+++.+++.+.++...+
T Consensus 274 ~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGL 351 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 334444444 4 4555698 78999999999999999999999999999999999999999999998888888877655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHH
Q 008603 100 LLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS-WRLMLGVLFIPSLIYF 178 (560)
Q Consensus 100 ii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~-Wr~~f~i~ai~~ll~~ 178 (560)
+.. ++.|++.+...+....++.|.+|++ |+.+.++.. ...+|..+++.+. ....+..+ ++..|.+.++..++..
T Consensus 352 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~--g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 352 IAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVM--GFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHH--HHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHH--HHHHHHhcchHHHHHHHHHHHHHHH
Confidence 544 8889999999999999999999977 888888766 5567877775544 33445556 8888887766655544
Q ss_pred H
Q 008603 179 V 179 (560)
Q Consensus 179 i 179 (560)
+
T Consensus 427 ~ 427 (438)
T 3o7q_A 427 I 427 (438)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.01 E-value=5.1e-11 Score=125.95 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH---H
Q 008603 15 NLLQGWDNATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLV---M 90 (560)
Q Consensus 15 ~fl~g~~~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll~ai~~il---~ 90 (560)
.++.........+.+|. +++++|+ ++.+.|++.++..++.++++++.|+++||+|||++++++.++.+++... .
T Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~ 93 (417)
T 2cfq_A 16 FFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93 (417)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555664 5667899 7789999999999999999999999999999999999888776543211 1
Q ss_pred HhhhhHH-HHHHHHHHHHHHHHHH----HHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhH
Q 008603 91 LWSPNVY-VLLLARLLDGFGIGLA----VTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRL 165 (560)
Q Consensus 91 ~~a~s~~-~lii~R~l~G~g~G~~----~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~ 165 (560)
.+++... .++..+++.+++.+.. .+....+..+. ++.|+...+....+..+|..+++.+...+. + .+||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~--~-~~~~~ 168 (417)
T 2cfq_A 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWALGASIVGIMF--T-INNQF 168 (417)
T ss_dssp THHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHHHHHHHHHHH--H-HCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHHHHHHHHHHH--H-hchhH
Confidence 2222111 1233444444433333 33333444333 145566667776677778777765543332 2 37999
Q ss_pred HHHHHHHHHHHHHHhhheeccCC
Q 008603 166 MLGVLFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 166 ~f~i~ai~~ll~~il~~~~lpEs 188 (560)
.|++.+++.++..++..+..||+
T Consensus 169 ~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 169 VFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCccc
Confidence 99888777655444433334454
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.01 E-value=7.7e-10 Score=118.34 Aligned_cols=159 Identities=11% Similarity=-0.037 Sum_probs=116.7
Q ss_pred HHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-----HHHHHHHHHHHHHHhhh----
Q 008603 25 IAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI-----VSSVLYFIGGLVMLWSP---- 94 (560)
Q Consensus 25 ~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~ll-----i~~ll~ai~~il~~~a~---- 94 (560)
....+|. ..+.++. +....+++.+...++.+++.++.++++||+|||+... ++.++.+++.+++.+..
T Consensus 302 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
T 4aps_A 302 GSVVLATFAAERVDS--SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG 379 (491)
T ss_dssp GGTHHHHHHHHSCCC--SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred ccHHHHHHHHHHhcc--CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334454 4444666 3355677778888888999999999999999986554 66777777666665543
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Q 008603 95 -----NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGV 169 (560)
Q Consensus 95 -----s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f~i 169 (560)
+.+.+++.-++.|++.+...+..+.++.|.+|++.|++++++.+....+|..+++.+. ... ...++...|.+
T Consensus 380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~--~~~-~~~~~~~~~~~ 456 (491)
T 4aps_A 380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV--TLY-NAKSEVAYFSY 456 (491)
T ss_dssp CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG--GGG-GGSSTTHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-hcccHHHHHHH
Confidence 6677788889999999998899999999999999999999999999999999986553 222 23466778888
Q ss_pred HHHHHHHHHHhhheeccCC
Q 008603 170 LFIPSLIYFVLTIFYLPES 188 (560)
Q Consensus 170 ~ai~~ll~~il~~~~lpEs 188 (560)
.+++.++..++.+++.++.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 457 FGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp THHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888877777666666654
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.41 E-value=1.1e-07 Score=102.62 Aligned_cols=144 Identities=10% Similarity=0.075 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhhCC----hHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHH
Q 008603 45 EGLIVAMSLIGATCITTCSGAIA----DWLGR----RPMLIVSSVLYFIGGLVMLWS---------PNVYVLLLARLLDG 107 (560)
Q Consensus 45 ~gli~s~~~lG~iig~~~~G~Ls----Dr~GR----R~~lli~~ll~ai~~il~~~a---------~s~~~lii~R~l~G 107 (560)
.+.+.....++.++..++.+.+. +|.|| ++.+.++.++.+++.+++.+. .+.+.+++.-++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 44454444455555555555543 44443 346667777777777766653 36677788889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccch---------hHHHHHHHHHHHHHH
Q 008603 108 FGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSW---------RLMLGVLFIPSLIYF 178 (560)
Q Consensus 108 ~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~W---------r~~f~i~ai~~ll~~ 178 (560)
++.+...+..+.++.|.+|++.||+++++.+....+|..+++.+..........+| +..|++.+++.++..
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA 496 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999665543321111123 344777777777766
Q ss_pred HhhheeccCC
Q 008603 179 VLTIFYLPES 188 (560)
Q Consensus 179 il~~~~lpEs 188 (560)
++.+++.++.
T Consensus 497 ~~~~~~~~~~ 506 (524)
T 2xut_A 497 IVFALYARSY 506 (524)
T ss_dssp HHHC------
T ss_pred HHHHHHHHHh
Confidence 6655665554
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.38 E-value=8.2e-08 Score=98.75 Aligned_cols=150 Identities=17% Similarity=0.059 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH-HHHHHH--H
Q 008603 14 GNLLQGWDNATIAGAVLY-IKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL-YFIGGL--V 89 (560)
Q Consensus 14 ~~fl~g~~~~~~~~~lp~-i~~~~gls~s~~~~gli~s~~~lG~iig~~~~G~LsDr~GRR~~lli~~ll-~ai~~i--l 89 (560)
..++............|. +++.+|. ++.+.+++.+...++.+++.++.+++.||+||+. ..+..+ ...+.. .
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~ 282 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLGL--SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWI 282 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHHH--HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 333444444444555554 4555888 7789999999999999999999999999998732 222222 222222 2
Q ss_pred HHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhHHHHHHHHHHHHHHHHHHHHHhccccchhHHH
Q 008603 90 MLW--SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLML 167 (560)
Q Consensus 90 ~~~--a~s~~~lii~R~l~G~g~G~~~~~~~~~isE~~p~~~RG~~~~l~~~~~~lG~~lg~li~~~l~~~~~~~Wr~~f 167 (560)
... .++.+.+++.-++.|++.+...+....++.|.+| ++|++++++.+....+|..+++.+... ..+..+|+..+
T Consensus 283 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~--l~~~~~~~~~~ 359 (375)
T 2gfp_A 283 PDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM--LPQTGQGSLGL 359 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH--HHHHHHHHHHH
T ss_pred HhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH--HhcCCcccHHH
Confidence 222 2467777788899999999999999999999998 899999999999999998887544322 22344566666
Q ss_pred HHH
Q 008603 168 GVL 170 (560)
Q Consensus 168 ~i~ 170 (560)
.+.
T Consensus 360 ~~~ 362 (375)
T 2gfp_A 360 LMT 362 (375)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 15
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.92 E-value=34 Score=21.10 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.3
Q ss_pred HHHHHHHhhcCCC
Q 008603 516 GIQILQQVTYGIT 528 (560)
Q Consensus 516 ~~q~lqq~~~~~~ 528 (560)
.+|++||.++.-+
T Consensus 7 vlql~qQy~qsh~ 19 (26)
T 1kdl_A 7 VLRLIEQYVSSHT 19 (26)
T ss_dssp HHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHH
Confidence 5899999988643
Done!