BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008604
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/560 (80%), Positives = 506/560 (90%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+ R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
EAREI FA+AQ K+APN+ HP++C+D +E G+VSGPRAGL+KEAE ++++ +T K
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
I+KFGMPMGPFRL DLVGFGVAIAT QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEKDI+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLA 540
GIAVKAADLDIA +MGMGFPPYRGGIMFWADS+GSKYIYSRL+EWS YGEFFKPCAFLA
Sbjct: 646 GIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLA 705
Query: 541 ERAGKGATLSAPVEEAKSKL 560
ER KG LSAPV++A S+L
Sbjct: 706 ERGSKGVLLSAPVKQASSRL 725
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 179/555 (32%), Positives = 277/555 (49%), Gaps = 20/555 (3%)
Query: 4 TSKPVKGEEAHSLGLVDAVVAPNQL-------VSTARQWALDILEHRRPWVATLYKTDKI 56
+ K + E+A + VDAVV ++L + A LD R+P + L K + I
Sbjct: 170 SGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL-KLNAI 228
Query: 57 EPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
E + F QA PN P+ I ++ G L+ EA F KL ++
Sbjct: 229 EQMMAFETAKGFVAGQA---GPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTS 285
Query: 117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILK 176
L+ +F + K V D + VK+ A+LG G+MG GIA P+++K
Sbjct: 286 ASNCLIGLFLNDQELKKKAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMK 343
Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236
++NE +E G+ L RV KG+MT K + ++ + L Y F +VD+V+EA++E
Sbjct: 344 DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVE 403
Query: 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE 296
N +KQ + A++E + ILASNTSTI ++L+ + + VG HFF+P H+MPL+E
Sbjct: 404 NPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVE 463
Query: 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYL 356
++R ++S + + KK+ K PIVV +C GF VNR+ FPY LV G D
Sbjct: 464 VIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVR 523
Query: 357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGE 414
ID+ + KFG PMGP L D+VG E FP+R + I + E KR G+
Sbjct: 524 IDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQ 583
Query: 415 TTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEA 474
KGFY Y+ +K KK ++ + I + ++++DI+ + P+ E
Sbjct: 584 KNGKGFYAYEADKKGKQ----KKLVDSSVLEVLKPIVYEQRDVTDEDIINWMMIPLCLET 639
Query: 475 CRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFK 534
R +GI AA+ D+ V G+GFP +RGG + + DS+G + ++++ L G +
Sbjct: 640 VRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAEL-GALYH 698
Query: 535 PCAFLAERAGKGATL 549
P A L E A G +
Sbjct: 699 PTAKLREMAKNGQSF 713
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 171/576 (29%), Positives = 290/576 (50%), Gaps = 30/576 (5%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
++ + K + +EA LG++DAVV + V A ++A I++ +P + L
Sbjct: 155 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIID--KPIEPRRIFNKPVPSLP 211
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
+F A A+ RKQ P + P C+ ++A V G+++E + F L S K+
Sbjct: 212 NMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKA 271
Query: 121 LVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKE 177
L + FFA++ +K G + + + V V +LG G MG GIA + V+ E
Sbjct: 272 LQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 331
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
+ K L+A + L+ + + K + + VD+V+EA+ E+
Sbjct: 332 SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS--STKELSTVDLVVEAVFED 389
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
++LK+++FA+L C P L +NTS ++++ I T ++G HFFSPAHVM LLE+
Sbjct: 390 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEV 449
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
+ + +SP I ++ + KKI K +VVGNC GF NRM PY F L+E G+ +
Sbjct: 450 IPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDV 509
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----TYKSMIIPIM 406
D + +FG MGPFR++DL G V TG P R + S + ++
Sbjct: 510 DGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDML 569
Query: 407 QEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVE 464
E R G+ T KG+Y YD+ R PDP + F+ + R + + + +S+++I+E
Sbjct: 570 CEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEEILE 625
Query: 465 MIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEE 524
+ ++NEA R+ EG+A + +D+ + G G+P ++GG MF+A S+G + +L++
Sbjct: 626 RCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQK 685
Query: 525 WSSLYGEF--FKPCAFLAERAGKGATLSAPVEEAKS 558
+ + +P +L +G S P++E +S
Sbjct: 686 YYRQNPDIPQLEPSDYLRRLVAQG---SPPLKEWQS 718
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 176/579 (30%), Positives = 294/579 (50%), Gaps = 36/579 (6%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
++ + K + +EA LG++DAVV + V A ++A I++ +P + L
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIID--KPIEPRRIFNKPVPSLP 226
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
+F A A+ RKQ P + P C+ ++A V G+++E + F L S K+
Sbjct: 227 NMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKA 286
Query: 121 LVHIFFAQRGTSK--VP-GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKE 177
L + FFA++ +K P G + + + V V +LG G MG GIA + V+ E
Sbjct: 287 LQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 346
Query: 178 VNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
+ K L+A + L+ SR + K + S T + VD+V+EA+
Sbjct: 347 SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-----KELSTVDLVVEAV 401
Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
E+++LK+++FA+L C P L +NTS ++++ I T ++G HFFSPAHVM L
Sbjct: 402 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 461
Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
LE++ + +SP I ++ + KKI K +VVGNC GF NRM PY F L+E G+
Sbjct: 462 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 521
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----TYKSMII 403
+D + +FG MGPFR++DL G V TG P R + S +
Sbjct: 522 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 581
Query: 404 PIMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKD 461
++ E R G+ T KG+Y YD+ R PDP + F+ + R + + + +S+++
Sbjct: 582 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEE 637
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSR 521
I+E + ++NEA R+ EG+A + +D+ + G G+P ++GG MF+A S+G + +
Sbjct: 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 697
Query: 522 LEEWSSLYGEF--FKPCAFLAERAGKGATLSAPVEEAKS 558
L+++ + +P +L +G S P++E +S
Sbjct: 698 LQKYYRQNPDIPQLEPSDYLRRLVAQG---SPPLKEWQS 733
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 176/579 (30%), Positives = 294/579 (50%), Gaps = 36/579 (6%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
++ + K + +EA LG++DAVV + V A ++A I++ +P + L
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIID--KPIEPRRIFNKPVPSLP 226
Query: 61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
+F A A+ RKQ P + P C+ ++A V G+++E + F L S K+
Sbjct: 227 NMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKA 286
Query: 121 LVHIFFAQRGTSK--VP-GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKE 177
L + FFA++ +K P G + + + V V +LG G MG GIA + V+ E
Sbjct: 287 LQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 346
Query: 178 VNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
+ K L+A + L+ SR + K + S T + VD+V+EA+
Sbjct: 347 SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-----KELSTVDLVVEAV 401
Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
E+++LK+++FA+L C P L +NTS ++++ I T ++G HFFSPAHVM L
Sbjct: 402 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 461
Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
LE++ + +SP I ++ + KKI K +VVGNC GF NRM PY F L+E G+
Sbjct: 462 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 521
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----TYKSMII 403
+D + +FG MGPFR++DL G V TG P R + S +
Sbjct: 522 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 581
Query: 404 PIMQEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKD 461
++ E R G+ T KG+Y YD+ R PDP + F+ + R + + + +S+++
Sbjct: 582 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEE 637
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSR 521
I+E + ++NEA R+ EG+A + +D+ + G G+P ++GG MF+A S+G + +
Sbjct: 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 697
Query: 522 LEEWSSLYGEF--FKPCAFLAERAGKGATLSAPVEEAKS 558
L+++ + +P +L +G S P++E +S
Sbjct: 698 LQKYYRQNPDIPQLEPSDYLRRLVAQG---SPPLKEWQS 733
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/465 (31%), Positives = 239/465 (51%), Gaps = 33/465 (7%)
Query: 115 SETCKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY 171
S K+L + FFA++ +K G + + + V V +LG G MG GIA +
Sbjct: 2 SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGI 61
Query: 172 PVILKEVNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228
V+ E + K L+A + L+ SR + K + S T + VD
Sbjct: 62 SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-----KELSTVD 116
Query: 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP 288
+V+EA+ E+++LK+++FA+L C P L +NTS ++++ I T ++G HFFSP
Sbjct: 117 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSP 176
Query: 289 AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLV 348
AHVM LLE++ + +SP I ++ + KKI K +VVGNC GF NRM PY F L+
Sbjct: 177 AHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLL 236
Query: 349 ERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----T 397
E G+ +D + +FG MGPFR++DL G V TG P R +
Sbjct: 237 EEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNS 296
Query: 398 YKSMIIPIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKFA 455
S + ++ E R G+ T KG+Y YD+ R PDP + F+ + R + + +
Sbjct: 297 RYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQR 352
Query: 456 KLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGS 515
+S+++I+E + ++NEA R+ EG+A + +D+ + G G+P ++GG MF+A S+G
Sbjct: 353 TISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGL 412
Query: 516 KYIYSRLEEWSSLYGEF--FKPCAFLAERAGKGATLSAPVEEAKS 558
+ +L+++ + +P +L +G S P++E +S
Sbjct: 413 PTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG---SPPLKEWQS 454
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/416 (32%), Positives = 213/416 (51%), Gaps = 36/416 (8%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---- 202
V VAI+GGG MG +A L+ L NE+ R + L+ + K
Sbjct: 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ-------RCKQELEVMYAREKSFKR 106
Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262
+ ++ EK + L D+ + D+++E++IE++ LK+++FA+LE C CI +NT
Sbjct: 107 LNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNT 166
Query: 263 STIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
S++DLN I +VG HFF+PA+V+ L+EI+ + TS Q I + IKK P
Sbjct: 167 SSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLP 226
Query: 323 IVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381
++VGNC F NR+ Y Q+ L+ E G + ID+ IT FG MGP +AD+ GF V
Sbjct: 227 VLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDV 286
Query: 382 AIATGMQFI--ENFPERTYKSMIIPIMQED---KRAGETTRKGFYLYDER-RKASPDPEV 435
M+ + EN E PI +E KR G T KGFY YD++ ++ D E+
Sbjct: 287 -----MEKLKKENGLEPN------PIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEM 335
Query: 436 KKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVM 495
++ I + + I ++++D++ + +P VNE R EG+ + +DI ++
Sbjct: 336 EQIIRRVSQNAKSNIQI----INDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFIL 391
Query: 496 GMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLSA 551
G G+P + GG M + + G I + L WSSL K A++ A K A +S
Sbjct: 392 GFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEP---KESAYIVADALKTANVST 444
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 132/467 (28%), Positives = 210/467 (44%), Gaps = 74/467 (15%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
V+ VA++G G MG+GIA + V+L +++ + L I + A L SRV +GK+T E
Sbjct: 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
E+T+ L V D + D+VIEA E + +K+ +FA L + CPP +L +NTS+I
Sbjct: 65 TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
+ I + +R+ G HFF+PA VM L+E+V T+ +V+ L ++ K P+
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 327 NCTGFAVNRMFFPYTQAAF-LLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFGVAIA 384
+ GF VNR+ PY A+ L E+ +ID A+ G PMGP L DL+G V A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244
Query: 385 TGMQFIENF-------PERTYKSMII---------------------------------P 404
F P + ++I P
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSP 304
Query: 405 IMQEDKRAGETTRKGFYLYDER---------RKASPDPEVKKFIEKARSMSGVAIDPKFA 455
+ E K G T L + + R A P + K K +++ A++P A
Sbjct: 305 MKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSA 364
Query: 456 --------KLSEKDIVEMIFFP----------VVNEACRVFAEGIAVKAADLDIASVMGM 497
+ K ++++ +P ++NEA +G+A + D+D A +G+
Sbjct: 365 TRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEALDALQKGVASE-QDIDTAMRLGV 423
Query: 498 GFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYG-EFFKPCAFLAERA 543
+P G + W LG + I LE YG E ++PC+ L +RA
Sbjct: 424 NYPY---GPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRA 467
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
K E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H I AS
Sbjct: 75 KAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NTS++ + I T +DR G HFF+P VM L+E+++T TS + L+D K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
P+ + GF VNR+ PY A L ERG ID A+ G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
I G ++ S + + + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
K E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H I AS
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NTS++ + I T +DR G HFF+P VM L+E+++T TS + L+D K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
P+ + GF VNR+ PY A L ERG ID A+ G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
I G ++ S + + + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
K E EKT+S + D S D+V+EAI++N+ +K ++F L+K+ H I AS
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NTS++ + I T +DR G HFF+P VM L+E+++T TS + L+D K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
P+ + GF VNR+ PY A L ERG ID A+ G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
I G ++ S + + + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
K E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H I AS
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NTS++ + I T +DR G HFF+P VM L+++++T TS + L+D K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
P+ + GF VNR+ PY A L ERG ID A+ G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
I G ++ S + + + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
K E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H I AS
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NT+++ + I T +DR G HFF+P VM L+E+++T TS + L+D K + K
Sbjct: 135 NTASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
P+ + GF VNR+ PY A L ERG ID A+ G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
I G ++ S + + + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 144/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
K E EKT+S + D S D+V+EAI+EN+ +K ++F L+K H I AS
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NTS++ + I T +DR G HFF+P VM L+E+++T TS + L+D K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
P+ + GF VNR+ PY A L ERG ID A+ G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
I G ++ S + + + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 18/291 (6%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
K E EKT+S ++ D S D+V+EAI+EN+ +K ++F L+K+ H I AS
Sbjct: 75 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NTS++ + + T +DR G HFF+P +M L+E+V+T TS + + L+D K + K
Sbjct: 135 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
P+ + GF VNR+ PY A L ERG ID A+ G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVAIATGMQFIENFPERTYKSMII---PIMQE---DKRAGETTRKGFYLY 423
+ T I+ + E ++ + P M + + + G+ T +GFY Y
Sbjct: 255 ----LDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKY 301
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
K E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H I AS
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NTS++ + I T +DR G HFF+P VM L+E+++T TS + L+D K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
P+ + GF V+R+ PY A L ERG ID A+ G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVSRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
I G ++ S + + + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 144/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
VK V ++GGGLMG+GIA + + V+L + E L + +L+ KK
Sbjct: 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
K E EKT+S + D S D+V+EAI+EN+ +K ++F L+K+ H I AS
Sbjct: 75 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
NT ++ + I T +DR G HFF+P VM L+E+++T TS + L+D K + K
Sbjct: 135 NTCSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
P+ + GF VNR+ PY A L ERG ID A+ G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
I G ++ S + + + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 126/265 (47%), Gaps = 10/265 (3%)
Query: 169 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTISLLTGVLDYES 223
+ + V+L + E L + +L+ KK K E EKT+S + D S
Sbjct: 59 TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 118
Query: 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVG 282
D+V+EAI+EN+ +K ++F L+K+ H I ASNTS++ + I T +DR G
Sbjct: 119 VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAG 178
Query: 283 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQ 342
HFF+P V L+E+++T TS + L+D K + K P+ + GF VNR+ PY
Sbjct: 179 LHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLX 238
Query: 343 AAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGMQFIENFPERTY 398
A L ERG ID A G P GPF L D VG I G +
Sbjct: 239 EAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQ 298
Query: 399 KSMIIPIMQEDKRAGETTRKGFYLY 423
S + + + + G+ T +GFY Y
Sbjct: 299 PSPSLNKLVAENKFGKKTGEGFYKY 323
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 124/265 (46%), Gaps = 10/265 (3%)
Query: 169 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTISLLTGVLDYES 223
+ + V+L + E L + +L+ KK K E KT+S + D S
Sbjct: 26 TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIATSTDAAS 85
Query: 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVG 282
D+V+EAI+EN+ +K ++F L+K H I ASNTS++ + I T +DR G
Sbjct: 86 VVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDRFAG 145
Query: 283 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQ 342
HFF+P V L+E+++T TS + L+D K + K P+ + GF VNR+ PY
Sbjct: 146 LHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLX 205
Query: 343 AAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGMQFIENFPERTY 398
A L ERG ID A G P GPF L D VG I G +
Sbjct: 206 EAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQ 265
Query: 399 KSMIIPIMQEDKRAGETTRKGFYLY 423
S + + + + G+ T +GFY Y
Sbjct: 266 PSPSLNKLVAENKFGKKTGEGFYKY 290
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 136/284 (47%), Gaps = 35/284 (12%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
KV ++G GL G GIA A I S + V+L++V+EK LEA ++ L S+++ F
Sbjct: 14 KVFVIGAGLXGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEELLSKIE--------F 64
Query: 209 EKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268
T+ E KD D+V EA+ E+++ K ++ ++E+ + L SNTS I ++
Sbjct: 65 TTTL---------EKVKDCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVD 113
Query: 269 LIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328
I ER S R +G H+ +P HV PL+EIV + T + + + +++ K +V C
Sbjct: 114 DIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVV---C 170
Query: 329 TGFA-VNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPM-----GPFRLADLVGFGVA 382
G + VNR A +E G +DR + K + + GP D +G VA
Sbjct: 171 KGQSLVNRFNAAVLSEASRXIEEGVRAEDVDR-VWKHHLGLLYTLFGPLGNLDYIGLDVA 229
Query: 383 IATGMQFIENFPERTYKSMIIPIMQEDKRAGET---TRKGFYLY 423
+ + F + +K +QE + GE KG Y Y
Sbjct: 230 YYASLYLYKRFGDEKFKPP--EWLQEKIKKGEVGVKAGKGIYEY 271
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 132/284 (46%), Gaps = 11/284 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK--GKMT 204
+ V +LG G++GS IA + V ++N L+A R L + +K
Sbjct: 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEG-LAAVYEKEVAGAA 62
Query: 205 QEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
+K + + D ++ KD D+VIEA+ E++ LK+ I+ L + P I A+N+S
Sbjct: 63 DGAAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSS 122
Query: 264 T-IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
T + +L+G T D+ + HF + V E++ T +T P+V +++ I P
Sbjct: 123 TLLPSDLVG-YTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVP 181
Query: 323 I-VVGNCTGFAVNRMFFPYTQAAF-LLVERGTDLYLIDRAI-TKFGMPMGPFRLADLVGF 379
I + G+ +N + P AA LLV+ D ID+ G P GPF + D+V
Sbjct: 182 IELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIV-- 239
Query: 380 GVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
G+ A + + +R + + + + + G T +GFY Y
Sbjct: 240 GLTTAYNISSVSGPKQREFAAYLKENYIDKGKLGLATGEGFYRY 283
>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
pdb|3F3S|B Chain B, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
Length = 313
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 9/216 (4%)
Query: 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KF 208
V I+G G++G A + V L ++ ++ + + +R ++ + G +
Sbjct: 6 VVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSV 65
Query: 209 EKTISLLTGVLDYESFKDVDMVI-EAIIENVSLKQQIFADLEKYCPPHCILASNTSTI-D 266
E+ +SL++G + + + M I E + E++ LK++IFA L+ IL+S+TS +
Sbjct: 66 EEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMP 125
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI-VV 325
L + K IV AH +P + +PL+E+V +T+P + + KKI + P+ V
Sbjct: 126 SKLFAGLVHVKQCIV-AHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQ 184
Query: 326 GNCTGFAVNRMFFPYTQAAFLLVERG----TDLYLI 357
GF +NR+ + A+ LVE G +DL L+
Sbjct: 185 KEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLV 220
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 109/215 (50%), Gaps = 7/215 (3%)
Query: 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KF 208
V I+G GL+G A + V L ++ + + + +R ++S + G +
Sbjct: 9 VLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSA 68
Query: 209 EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
E+ +SL++ + E+ + V + E + EN+ LK++IFA L+ +L+S++S +
Sbjct: 69 EEQLSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLP 128
Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI-VVG 326
+ + + + AH +P + +PL+E+V +TSP + + +KI ++P+ V+
Sbjct: 129 SKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLK 188
Query: 327 NCTGFAVNRMFFPYTQAAFLLVERG----TDLYLI 357
GF +NR+ + A+ LVE G +DL L+
Sbjct: 189 EIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLV 223
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 159 GSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215
G+G+ +A ++ YP L +++EK LE R R NL+ + + ++ FE+ ++
Sbjct: 54 GTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMV 113
Query: 216 TGVLDYESFKDVD 228
L +D D
Sbjct: 114 VSALSIHHLEDED 126
>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From
Mycobacterium Marinum
Length = 298
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
++L+ + EEA LGLV VV P QL+ A ++A DI + P
Sbjct: 194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSP 238
>pdb|3R9P|A Chain A, Crystal Structure Of Acka From Mycobacterium
Paratuberculosis Atcc Baa-968 K-10
pdb|3R9P|B Chain B, Crystal Structure Of Acka From Mycobacterium
Paratuberculosis Atcc Baa-968 K-10
Length = 391
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 450 IDPKFAKLSEKDIVEMIF-----FPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRG 504
+DP+F + IVE I P + A R + +A DL+ A ++ +G G
Sbjct: 29 VDPEFGVAASTGIVERIGEESSPVPDHDAALRRAFDMLAGDGVDLNTAGLVAVGHRVVHG 88
Query: 505 GIMFWADSLGSKYIYSRLEEWSSL 528
G F+ ++ + +RL E S L
Sbjct: 89 GNTFYRPTVLDDAVIARLHELSEL 112
>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
Length = 277
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE 41
++ + + EEA +LGL+D +VAP+ + +A WA LE
Sbjct: 179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLE 219
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG 201
L + +K+VA++G G +G +A A V+L +V + L R +L ++ +
Sbjct: 189 LENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEE 248
Query: 202 KMTQEKFEKTISLLTG------VLDYESFKDVDMVIEAI 234
Q F +T+ + G ++ ++ DVDMVI A+
Sbjct: 249 HGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAV 287
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG 201
L + +K+VA++G G +G +A A V+L +V + L R +L ++ +
Sbjct: 189 LENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEE 248
Query: 202 KMTQEKFEKTISLLTG------VLDYESFKDVDMVIEAI 234
Q F +T+ + G ++ ++ DVDMVI A+
Sbjct: 249 HGIQLAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAV 287
>pdb|3BHS|A Chain A, Nitrosomonas Europaea Rh50 And Mechanism Of Conduction By
Rhesus Protein Family Of Channels
Length = 406
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 333 VNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGM 387
V R F T +L+V G LY++ RA FG + P + ++ A+ATG+
Sbjct: 37 VRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGL 91
>pdb|3B9W|A Chain A, The 1.3 A Resolution Structure Of Nitrosomonas Europaea
Rh50 And Mechanistic Implications For Nh3 Transport By
Rhesus Family Proteins
Length = 407
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 333 VNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGM 387
V R F T +L+V G LY++ RA FG + P + ++ A+ATG+
Sbjct: 38 VRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGL 92
>pdb|3B9Y|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
pdb|3B9Z|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
Complexed With Carbon Dioxide
Length = 388
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 333 VNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGM 387
V R F T +L+V G LY++ RA FG + P + ++ A+ATG+
Sbjct: 32 VRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGL 86
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 164 TALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL---TGVLD 220
+ +++N P LK++ + F+++G+G+ ++ S+ K ++ K E S+ GVL
Sbjct: 110 SEFLINNQPCRLKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFEEAAGVLK 169
Query: 221 YESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
Y++ K + + +N++ + I +LE P I AS
Sbjct: 170 YKTRKKKAENKLFETQDNLNRVEDILHELEGQVEPLKIQAS 210
>pdb|1YSY|A Chain A, Nmr Structure Of The Nonstructural Protein 7 (Nsp7) From
The Sars Coronavirus
pdb|2KYS|A Chain A, Nmr Structure Of The Sars Coronavirus Nonstructural
Protein Nsp7 In Solution At Ph 6.5
Length = 85
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 194 LQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQ 242
L + + K T E FEK +SLL+ +L + D++ + E +++N + Q
Sbjct: 37 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQ 85
>pdb|2AHM|A Chain A, Crystal Structure Of Sars-Cov Super Complex Of
Non-Structural Proteins: The Hexadecamer
pdb|2AHM|B Chain B, Crystal Structure Of Sars-Cov Super Complex Of
Non-Structural Proteins: The Hexadecamer
pdb|2AHM|C Chain C, Crystal Structure Of Sars-Cov Super Complex Of
Non-Structural Proteins: The Hexadecamer
pdb|2AHM|D Chain D, Crystal Structure Of Sars-Cov Super Complex Of
Non-Structural Proteins: The Hexadecamer
Length = 88
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 194 LQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQ 242
L + + K T E FEK +SLL+ +L + D++ + E +++N + Q
Sbjct: 40 LHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINRLCEEMLDNRATLQ 88
>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R9Q|B Chain B, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R9Q|C Chain C, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 262
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
++LT +PV EA +GLV+ VVA Q A A +I
Sbjct: 165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEI 203
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 145 RRVKKVAILGGGLMGSGIATAL 166
R VK + I+GGG +GS +A AL
Sbjct: 178 REVKSITIIGGGFLGSELACAL 199
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 145 RRVKKVAILGGGLMGSGIATAL 166
R VK + I+GGG +GS +A AL
Sbjct: 196 REVKSITIIGGGFLGSELACAL 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,810,080
Number of Sequences: 62578
Number of extensions: 656085
Number of successful extensions: 1998
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1898
Number of HSP's gapped (non-prelim): 51
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)